Citrus Sinensis ID: 013230

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------
Protein Sequence
MGNQNDTVPIPHLCSRLEKWLLSKKFNYSCGPSSTLSKILETPYRNLESLQGEVNFSILSTPKKSSFKDTSDVHERDINSQKSNAVSESVKNESCEDIEVAVKKLSLASTSASLVVDHSAPTKLLDLFSKYSDPENIVKVGEGTFGEAFLAGNTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYNSAKEAIFDPFFSDLIVDRPL
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHccccccccccccccccccccccEEcccEEEEEEEEcccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHcEEEEEEccccHHHHHHHHHHHHHcccccccccccccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEccccccccccccccccEEEEEcccEEEEEEcccccccccccEEEEccccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccHHHHHHcccHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccEccccHHHHHHHHHHHHHHcccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHccccccEEEEEEccccEEEEcccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEEEEccccHHHHHHHHHHHHHcccccccccccccccEEEEEEEccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcHHccccccEEEEccccccEEEEccccEEEEccccEEEEEEEEEccEccccccEEEEcccccHHHHccccccHHHHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHcccc
Coil and Loop (DISEMBL)
mgnqndtvpiphLCSRLEKWLLskkfnyscgpsstlskILETPYRnleslqgevnfsilstpkkssfkdtsdvherdinsqksnavsesvknescEDIEVAVKKLSLASTsaslvvdhsaptkLLDLFskysdpenivkvgegtfgeaflagntvckvvpidgdlkvngeAQKKSEELLEEVVLSWTLNHlrrnegdtlnACTTFVEMFEIKVCQGPYDAALIQAWEdwddkhcsendnpkefpenqRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDftlsrintgediffldlsqdpelfsgpkgdkqFDTYRKMKKVTedqwegsfpktnVLWLVYLVDMLLLKktfdrsskdeRDLRSLKKRLDKYnsakeaifdpffsdlivdrpl
Flexible Loop (DISEMBL)
mgnqndtvpiphLCSRLEKWLLSKKFNYSCGPSSTLSKILETPYRNLESLQGEVNfsilstpkkssfkdtsdvherdinsqksnavsesvkneSCEDIEVAVKKLSLASTSASLVVDHSAPTKLLDLFSKYSDPENIVKVGEGTFGEAFLAGNTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTlnhlrrnegDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLsqdpelfsgpkgdkqfdTYRKMKKvtedqwegsfpktNVLWLVYLVDMLLLKktfdrsskderdlrslkkrldkynsakeaifdpffsdlivdrpl
Low Complexity Region (SEG)
MGNQNDTVPIPHLCSRLEKWLLSKKFNYSCGPSSTLSKILETPYRNLESLQGEVNFSILSTPKKSSFKDTSDVHERDINSQKSNAVSESVKNESCEDIEVavkklslastsaslvvDHSAPTKLLDLFSKYSDPENIVKVGEGTFGEAFLAGNTVCKVVPIDGDLKVNGEAQKKSeelleevvlSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNvlwlvylvdmlllKKTFDRSSKDERDLRSLKKRLDKYNSAKEAIFDPFFSDLIVDRPL
Disordered region (IsUnstruct)
********PIPHLCSRLEKWLLSKKFNYSCGPSSTLSKILETPYRNLESLQGEVNF******************************************EVAVKKLSLASTSASLVVDHSAPTKLLDLFSKYSDPENIVKVGEGTFGEAFLAGNTVCKVVPIDGDLKVNG*******ELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHC***********NQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQ****************Y****KVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTF************************EAIFDPFFSDLIV****
Disordered Region (DISOPRED)
******T*PIPHLCSRLEK*******************************************************************************************************KLLDLFSKYSDPENIVKVGEGTFGEAFLAGNTVCKVVPIDGDLK*********EELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDK********KEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSV*********QMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDML*****************SLKKRLDKYNSAKEAIFDPFFSDLIVDRP*
Disordered Region (DISEMBL)
MGNQNDTVPIPHLCSRLEKWLLSKKFNYSCGPSSTLSKILETPYRNLESLQGEVNFSILSTP*********************************EDIEVAVKKLSLASTSASLVVDHSAPTKLLDLFSKYSDPENIVKVGEGTFGEAFLAGNTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFD********LRSLKKRLDKYNSAKEAIFDPFFSDLIVDRPL
Disordered Region (DISPRO)
***QNDTVPIPHLCSRLEKWLLSKKFNYSC*****************************************************************EDIEVAVKKLSLASTSASLVVDHSAPTKLLDLFSKYSDPENIVKVGEGTFGEAFLAGNTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYNSAKEAIFDPFFSDLIVDR**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNQNDTVPIPHLCSRLEKWLLSKKFNYSCGPSSTLSKILETPYRNLESLQGEVNFSILSTPKKSSFKDTSDVHERDINSQKSNAVSESVKNESCEDIEVAVKKLSLASTSASLVVDHSAPTKLLDLFSKYSDPENIVKVGEGTFGEAFLAGNTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYNSAKEAIFDPFFSDLIVDRPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	447	2.2.26 [Sep-21-2011]
Q2KIP2	781	Serine/threonine-protein	yes	no	0.642	0.367	0.406	4e-53
Q8TF76	798	Serine/threonine-protein	yes	no	0.720	0.403	0.368	8e-53
Q9Z0R0	754	Serine/threonine-protein	yes	no	0.644	0.381	0.384	3e-51
P83103	566	Putative serine/threonine	yes	no	0.586	0.462	0.346	9e-48
O13924	488	Serine/threonine-protein	yes	no	0.722	0.661	0.321	2e-38
P32789	676	Serine/threonine-protein	yes	no	0.369	0.244	0.261	0.0001
Q54LU8	1221	Probable serine/threonine	yes	no	0.208	0.076	0.330	0.0002
Q04770	291	Cell division protein kin	N/A	no	0.402	0.618	0.242	0.0007

>sp|Q2KIP2|HASP_BOVIN Serine/threonine-protein kinase haspin OS=Bos taurus GN=GSG2 PE=2 SV=1

 Score =  209 bits (532), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 121/298 (40%), Positives = 173/298 (58%), Gaps = 11/298 (3%)

Query: 135 ENIVKVGEGTFGEAF--LAGNT--VCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNH 190
           E   K+GEG FGE F  +  +T    K++ I+G   VNG  QK  EE+L E+++S  L+ 
Sbjct: 468 ECCEKIGEGVFGEVFQTVTNHTPVALKIIAIEGQNLVNGAHQKTFEEILPEIIISKELSL 527

Query: 191 LRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYI 250
           L     +  N    F+ +  +   QG Y   L+QAW+ +     S ND P  F E+Q +I
Sbjct: 528 L---SDEACNRTEGFIGLNSVHCVQGSYPPLLLQAWDHYHSTKGSANDRPDFFREDQLFI 584

Query: 251 VFVLQHGGKDLESFV--LLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRND 308
           V   + GG DLE     L +I  A+S+L Q+TA LAVAEA+  FEHRDLHWGNVLL +  
Sbjct: 585 VLEFEFGGIDLEQMRKKLSSIATAKSILHQITASLAVAEASLHFEHRDLHWGNVLLKKTS 644

Query: 309 SVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQFD 368
              +++ L+GK+  + T GL V IID+TLSR+     + F D+S+D +LF G +GD QF+
Sbjct: 645 LKELHYTLNGKKSSIPTRGLQVNIIDYTLSRLERDGIVVFCDISRDEDLFMG-QGDYQFE 703

Query: 369 TYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKY 426
            YR M+K   + W    P  NVLWL YL D +L + TF +S  +   L+ +KK++  +
Sbjct: 704 IYRLMRKENNNCWGEYHPYNNVLWLHYLTDKILNQMTF-KSKHNTPALKRMKKQIQHF 760

Serine/threonine-protein kinase that phosphorylates histone H3 at 'Ser-3' (H3T3ph) during mitosis. This positions and activates AURKB and other components of the chromosomal passenger complex (CPC) at centromeres to ensure proper chromatid cohesion, metaphase alignment and normal progression through the cell cycle.
Bos taurus (taxid: 9913)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q8TF76|HASP_HUMAN Serine/threonine-protein kinase haspin OS=Homo sapiens GN=GSG2 PE=1 SV=3

 Score =  208 bits (529), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 127/345 (36%), Positives = 193/345 (55%), Gaps = 23/345 (6%)

Query: 89  SVKNESCEDIEVAVKKLSLASTSASLVVDHSAPTKLLDLFSKYSDPENIVKVGEGTFGEA 148
           S+ N+   D E   K     S    +   H  PT+ L         +   K+GEG FGE 
Sbjct: 451 SISNKKASDAE---KVYGECSQKGPVPFSHCLPTEKL---------QRCEKIGEGVFGEV 498

Query: 149 F--LAGNT--VCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT 204
           F  +A +T    K++ I+G   VNG  QK  EE+L E+++S  L+ L    G+  N    
Sbjct: 499 FQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLL---SGEVCNRTEG 555

Query: 205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESF 264
           F+ +  +   QG Y   L++AW+ ++    S ND P  F ++Q +IV   + GG DLE  
Sbjct: 556 FIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQM 615

Query: 265 V--LLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMF 322
              L ++  A+S+L Q+TA LAVAEA+  FEHRDLHWGNVLL +     +++ L+GK   
Sbjct: 616 RTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSST 675

Query: 323 VRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE 382
           + + GL V+IID+TLSR+     + F D+S D +LF+G  GD QFD YR MKK   ++W 
Sbjct: 676 IPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTG-DGDYQFDIYRLMKKENNNRWG 734

Query: 383 GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN 427
              P +NVLWL YL D +L + TF ++  +   ++ +K+++ +++
Sbjct: 735 EYHPYSNVLWLHYLTDKMLKQMTF-KTKCNTPAMKQIKRKIQEFH 778

Serine/threonine-protein kinase that phosphorylates histone H3 at 'Ser-3' (H3T3ph) during mitosis. This positions and activates AURKB and other components of the chromosomal passenger complex (CPC) at centromeres to ensure proper chromatid cohesion, metaphase alignment and normal progression through the cell cycle.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9Z0R0|HASP_MOUSE Serine/threonine-protein kinase haspin OS=Mus musculus GN=Gsg2 PE=1 SV=3

 Score =  202 bits (515), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 115/299 (38%), Positives = 170/299 (56%), Gaps = 11/299 (3%)

Query: 135 ENIVKVGEGTFGEAFLAGN----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNH 190
           E   K+GEG FGE F   N       K++ I+G   VNG  QK  EE+L E+++S  L+ 
Sbjct: 441 ERCEKIGEGVFGEVFQIINDQAPVALKIIAIEGLDLVNGSHQKTFEEILPEIIISKELSL 500

Query: 191 LRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYI 250
           L     +  N    F+ +  +   QG Y   L++AW+ ++    S ND P  F E+Q +I
Sbjct: 501 L---SSEAYNRTEGFIGLNSVHCVQGLYPPLLLKAWDHYNTTKRSANDRPDFFQEDQLFI 557

Query: 251 VFVLQHGGKDLESFV--LLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRND 308
           +   + GG DLE     L ++  A+S+L Q+TA LAVAEA+  FEHRDLHWGNVLL + +
Sbjct: 558 ILEFEFGGVDLERMKTKLSSVATAKSILHQITASLAVAEASLHFEHRDLHWGNVLLKKTN 617

Query: 309 SVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQFD 368
              + + L+GK   + T GL V IID+TLSR+     + F D+S + +LF+G +GD QF+
Sbjct: 618 LKELRYTLNGKTSTIPTHGLQVNIIDYTLSRLERDGIVVFCDISAEEDLFTG-EGDYQFE 676

Query: 369 TYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN 427
            YR M+K  ++ W    P  NVLWL YL D +L K  F ++      ++ ++K L  ++
Sbjct: 677 IYRLMRKENKNCWGEYHPYNNVLWLHYLTDKILNKMKF-KTKCQSAAMKQIRKNLQHFH 734

Serine/threonine-protein kinase that phosphorylates histone H3 at 'Ser-3' (H3T3ph) during mitosis. This positions and activates AURKB and other components of the chromosomal passenger complex (CPC) at centromeres to ensure proper chromatid cohesion, metaphase alignment and normal progression through the cell cycle.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P83103|HASP_DROME Putative serine/threonine-protein kinase haspin homolog OS=Drosophila melanogaster GN=Haspin PE=2 SV=1

 Score =  191 bits (485), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 96/277 (34%), Positives = 158/277 (57%), Gaps = 15/277 (5%)

Query: 136 NIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVL 184
           N  K+GEG +GE F              + V K++P++G   +NGE QK   ++L E+++
Sbjct: 250 NTKKIGEGAYGEVFRCSRNQEVLKDHISDIVLKIIPLEGSTVINGEKQKTFSQILPEIII 309

Query: 185 SWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFP 244
           +  +  LR ++ ++ N    FV + ++ + +G Y    I+ WE +D++  SEND+P+ F 
Sbjct: 310 TKKMCSLRTSKTNSTNG---FVSIQKVSLVKGRYPPHFIKLWEKYDNEKGSENDHPELFG 366

Query: 245 ENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLL 304
           +NQ + V  L+  G D+ +F  LN  ++   L Q+   LAV E  Y+FEHRDLH GN+L+
Sbjct: 367 DNQLFAVLELKFAGSDMANFKFLNSEQSYYALQQIILALAVGEEEYQFEHRDLHLGNILI 426

Query: 305 SRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGD 364
              +   +        + + + G++VTIID+TLSR+   +  +F DLS+D ELF    GD
Sbjct: 427 EYTNKKHIVCTFKSSNLTLLSKGVNVTIIDYTLSRVTINDCCYFNDLSRDEELFQAT-GD 485

Query: 365 KQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL 401
            Q+D YR M+   ++ W    PKTN++WL Y++  +L
Sbjct: 486 YQYDVYRMMRNELKNNWSSFSPKTNIIWLSYVIVKVL 522

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O13924|HASP_SCHPO Serine/threonine-protein kinase haspin homolog hrk1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hrk1 PE=1 SV=1

 Score =  160 bits (406), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/383 (32%), Positives = 187/383 (48%), Gaps = 60/383 (15%)

Query: 63  KKSSFKDTSDVHERDINSQKSNAVSESVKNESCEDIEVAVKKLSLASTSASLVVDHSAPT 122
           KK S+K+   + +R+ N   +  +  S ++ + + + V+ K++   S+S +L    +  +
Sbjct: 70  KKGSYKENELLAKRNQNLVPTVIIPASPRDNASKSV-VSKKEVVNLSSSVALSGKPANNS 128

Query: 123 KLLDL--------------FSKY--SDPENIVKVGEGTFGEAFLAGNT-----VCKVVPI 161
           KL  L              FS++  S    I K+GE ++ E + A N      V KV+P 
Sbjct: 129 KLDPLHRLLQIVAQEDALPFSQFVKSQTFEIQKIGEASYSEVYQASNADDVPVVWKVIPF 188

Query: 162 DGDLKVNGEAQKKSEELLEEVVLS-WTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDA 220
             D    G+AQ    ++L EV +S W                  F  + ++ V +G Y +
Sbjct: 189 GED----GQAQYA--DVLNEVQISQWI-------------KVDGFANLHQVVVVKGTYPS 229

Query: 221 ALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVT 280
            L++ W+ +  ++ SEND P  +   Q Y V  L H G DLE F L +  E  S+  +  
Sbjct: 230 LLLEEWDRYLMQNGSENDRPDSYSSTQLYCVLCLDHSGTDLEHFELRSWRECWSVFYETL 289

Query: 281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSV--TMNFLLD-------------GKQMFVRT 325
             L++ E  YEFEHRDLHWGN+L+ + D     ++FLL+             G Q     
Sbjct: 290 KILSLVETRYEFEHRDLHWGNILIRKADRSEEEVSFLLNEISLDDIESVDFPGSQDKADD 349

Query: 326 FG--LSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEG 383
           F   L VT+IDFTL+R +  + I   +   DP+LF+G   D QFD YR M +VT+ +W  
Sbjct: 350 FDNILQVTLIDFTLARASYSQGIISYNEFNDPDLFNGV-DDYQFDIYRLMSRVTKGRWAQ 408

Query: 384 SFPKTNVLWLVYLVDMLLLKKTF 406
            FP TNVLWL YL+  LL KK  
Sbjct: 409 FFPITNVLWLHYLIHQLLHKKNL 431

Serine/threonine haspin-like protein kinase involved in cell cycle regulation.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P32789|ALK2_YEAST Serine/threonine-protein kinase Haspin homolog ALK2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ALK2 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 34/199 (17%)

Query: 207 EMFEIKVCQGPYDAA-LIQAWEDWDDKHCSENDNPKEFPENQRYIVFVL-QHGGKDLESF 264
           E+  +++ QG    A L+QA+    ++ C END        Q  I+++  ++ G  L   
Sbjct: 450 ELKSLRLIQGTSGVANLLQAYVVPSNQ-C-END--------QNLILYLFFKYQGTPLSRC 499

Query: 265 VLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVR 324
             ++ ++A S+  Q ++ L VAE+ ++ EHR+L   ++L+    +VT   L+D K    R
Sbjct: 500 SNIDYSQALSIFWQCSSILYVAESKFQLEHRNLTLDHILIDSKGNVT---LIDMK--CCR 554

Query: 325 TFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTED--QWE 382
              +      +T  R+             D   F   +G  QF+ Y  M+ +      W 
Sbjct: 555 FLNIDNNKASYT--RL-------------DHHYFFQGRGTLQFEIYELMRSMLPQPISWA 599

Query: 383 GSFPKTNVLWLVYLVDMLL 401
              P+TN+LWL +L   LL
Sbjct: 600 TFEPRTNLLWLYHLSSSLL 618

Serine/threonine haspin-like protein kinase involved in cell cycle regulation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q54LU8|Y8646_DICDI Probable serine/threonine-protein kinase DDB_G0286465 OS=Dictyostelium discoideum GN=DDB_G0286465 PE=3 SV=1

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 16/109 (14%)

Query: 246 NQRYIVFVLQHG--------GKDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDL 297
           N +Y+  +L++         GKD  +     I++ +SLL QV   LA+++  +EF H DL
Sbjct: 392 NIQYMHLILEYANMGTLKEYGKD--NNFEFTISQMKSLLFQVIYSLAISQKEFEFVHNDL 449

Query: 298 HWGNVLLS-----RNDSVTMNFLLDGK-QMFVRTFGLSVTIIDFTLSRI 340
           H+GNVLL+     +   V  + L +G+   ++      V I DF LSRI
Sbjct: 450 HFGNVLLTSFPVDKKYIVYQDKLDNGEFNNWIVGGDFIVKISDFGLSRI 498

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q04770|CDK2_ENTHI Cell division protein kinase 2 homolog OS=Entamoeba histolytica GN=CDC2 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 43/223 (19%)

Query: 248 RYIVFVLQHGGKDLESFV----LLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVL 303
           +++  V +   +DL  F+     + INE RS++ Q+  GLA     ++  HRD+   N+L
Sbjct: 74  KFLYLVFEFCDEDLYQFMSRSSKIPINETRSIVYQILQGLAFCH-YHQILHRDMKPQNIL 132

Query: 304 LSRNDSVTMNFLLDGKQMFV--RTFGLSVTIIDFTLSRINTGE-------DIF-----FL 349
           +++N ++ +      +   +  R +   V  + +    I  G        DI+     F 
Sbjct: 133 INKNGTIKLGEFGLARLTTINDRKYTSEVVTLWYRAPEILLGATQYGGAIDIWSTAAIFG 192

Query: 350 DLSQDPELFSGP-KGDKQFDTYRKMKKVTEDQWEG---------SFPKTNV--LWLVYLV 397
           +L    ELF G  K D+ F  + ++   TED W G         +FPK     L  ++  
Sbjct: 193 ELINKEELFKGRCKIDQLFKIFSQLGTPTEDIWNGVTKLPFYLSTFPKWKAKDLHTIFHT 252

Query: 398 D---MLLLKKTFDRSSKDERDLRSLKKRLDKYNSAKEAIFDPF 437
           D   + LL+K F         + + +KR+   ++ K   FDP 
Sbjct: 253 DERAVDLLQKMF---------IYTPEKRISAADALKHPFFDPL 286

Probably involved in the control of the cell cycle.

Entamoeba histolytica (taxid: 5759)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	447
296089840	617	unnamed protein product [Vitis vinifera]	0.993	0.719	0.670	1e-176
225450462	639	PREDICTED: serine/threonine-protein kina	0.997	0.697	0.652	1e-175
255543018	649	Serine/threonine-protein kinase Haspin,	0.984	0.677	0.622	1e-174
147780243	647	hypothetical protein VITISV_037752 [Viti	0.919	0.635	0.650	1e-162
356571048	638	PREDICTED: serine/threonine-protein kina	0.991	0.694	0.603	1e-155
30681147	599	protein kinase family protein [Arabidops	0.975	0.727	0.607	1e-154
357511731	649	Serine/threonine protein kinase haspin [	0.991	0.682	0.607	1e-154
28393072	599	unknown protein [Arabidopsis thaliana]	0.975	0.727	0.605	1e-154
297843738	585	hypothetical protein ARALYDRAFT_311988 [	0.955	0.729	0.590	1e-151
449435954	627	PREDICTED: serine/threonine-protein kina	0.982	0.700	0.635	1e-151

>gi|296089840|emb|CBI39659.3| unnamed protein product [Vitis vinifera]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 310/462 (67%), Positives = 366/462 (79%), Gaps = 18/462 (3%)

Query: 1   MGNQNDTVPIPHLCSRLEKWLLSKKFNYSCGPSSTLSKILETPYRNLESLQGEVNFSILS 60
           MG Q+D + +PHL S L KWL++KK NYS GPS +LSKILETP   +E + G+  F  L+
Sbjct: 159 MGVQSDDIVLPHLSSVLNKWLIAKKLNYSYGPSGSLSKILETPAMPMEPICGD-GFDALT 217

Query: 61  --TPKKSSFKDTSDVHERDINSQKSNAVSESVKNESCEDIEVAVKKLSLASTSASLVVDH 118
             TP+K+S +    V  R   SQKSN VS +  +E CEDI+VA+KKLSL S SASL  DH
Sbjct: 218 VKTPEKASPQVY--VVGRQTGSQKSNEVSLTTGDEGCEDIDVAIKKLSLTSRSASLGGDH 275

Query: 119 -------------SAPTKLLDLFSKYSDPENIVKVGEGTFGEAFLAGNTVCKVVPIDGDL 165
                        SAP+ LLD+FSKY DPE+IVK+GEGT+GEAF AG TVCK+VPIDGDL
Sbjct: 276 WDSFSALLTVCEQSAPSTLLDVFSKYCDPESIVKIGEGTYGEAFRAGKTVCKIVPIDGDL 335

Query: 166 KVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQA 225
            VNGE QK+S ELLEE +LS TLNHLR + G   N+CT+F+E  +++VCQGPYDAALI+A
Sbjct: 336 LVNGEVQKRSGELLEEAILSRTLNHLRGDGGRVNNSCTSFIETLDLRVCQGPYDAALIRA 395

Query: 226 WEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAV 285
           WEDWD+KH SEND+P+EFPE Q Y+VFVL+HGGKDLESFVLLN +E RSLLVQVT  LAV
Sbjct: 396 WEDWDEKHGSENDHPREFPEKQCYVVFVLEHGGKDLESFVLLNFDEVRSLLVQVTVALAV 455

Query: 286 AEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED 345
           AEAAYEFEHRDLHWGN+LLSR DS  + F L+GK MFV+TFGLS++IIDFTLSRINTGE 
Sbjct: 456 AEAAYEFEHRDLHWGNILLSRKDSEMLQFTLEGKNMFVKTFGLSISIIDFTLSRINTGEA 515

Query: 346 IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKT 405
           I FLDLS DPELF GPKGDKQ +TYRKMK++TED WEGSFPKTNVLWL YLVD+LLLKK+
Sbjct: 516 ILFLDLSSDPELFKGPKGDKQSNTYRKMKEITEDFWEGSFPKTNVLWLQYLVDILLLKKS 575

Query: 406 FDRSSKDERDLRSLKKRLDKYNSAKEAIFDPFFSDLIVDRPL 447
           F R+SKDER+LRSLKKR+D Y SAKEA  DPFF+D+ VD  +
Sbjct: 576 FKRTSKDERELRSLKKRMDNYGSAKEATSDPFFTDMFVDHAI 617

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450462|ref|XP_002276683.1| PREDICTED: serine/threonine-protein kinase haspin-like [Vitis vinifera]

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 312/478 (65%), Positives = 368/478 (76%), Gaps = 32/478 (6%)

Query: 1   MGNQNDTVPIPHLCSRLEKWLLSKKFNYSCGPSSTLSKILETPYRNLESLQGEVNFSILS 60
           MG Q+D + +PHL S L KWL++KK NYS GPS +LSKILETP   +E + G+  F  L+
Sbjct: 163 MGVQSDDIVLPHLSSVLNKWLIAKKLNYSYGPSGSLSKILETPAMPMEPICGD-GFDALT 221

Query: 61  --TPKKSS---------FKD-------TSDVHERDINSQKSNAVSESVKNESCEDIEVAV 102
             TP+K+S          +D         DV  R   SQKSN VS +  +E CEDI+VA+
Sbjct: 222 VKTPEKASPQVCLGLHSVQDRFNSNFMNKDVVGRQTGSQKSNEVSLTTGDEGCEDIDVAI 281

Query: 103 KKLSLASTSASLVVDH-------------SAPTKLLDLFSKYSDPENIVKVGEGTFGEAF 149
           KKLSL S SASL  DH             SAP+ LLD+FSKY DPE+IVK+GEGT+GEAF
Sbjct: 282 KKLSLTSRSASLGGDHWDSFSALLTVCEQSAPSTLLDVFSKYCDPESIVKIGEGTYGEAF 341

Query: 150 LAGNTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMF 209
            AG TVCK+VPIDGDL VNGE QK+S ELLEE +LS TLNHLR + G   N+CT+F+E  
Sbjct: 342 RAGKTVCKIVPIDGDLLVNGEVQKRSGELLEEAILSRTLNHLRGDGGRVNNSCTSFIETL 401

Query: 210 EIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNI 269
           +++VCQGPYDAALI+AWEDWD+KH SEND+P+EFPE Q Y+VFVL+HGGKDLESFVLLN 
Sbjct: 402 DLRVCQGPYDAALIRAWEDWDEKHGSENDHPREFPEKQCYVVFVLEHGGKDLESFVLLNF 461

Query: 270 NEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLS 329
           +E RSLLVQVT  LAVAEAAYEFEHRDLHWGN+LLSR DS  + F L+GK MFV+TFGLS
Sbjct: 462 DEVRSLLVQVTVALAVAEAAYEFEHRDLHWGNILLSRKDSEMLQFTLEGKNMFVKTFGLS 521

Query: 330 VTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTN 389
           ++IIDFTLSRINTGE I FLDLS DPELF GPKGDKQ +TYRKMK++TED WEGSFPKTN
Sbjct: 522 ISIIDFTLSRINTGEAILFLDLSSDPELFKGPKGDKQSNTYRKMKEITEDFWEGSFPKTN 581

Query: 390 VLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYNSAKEAIFDPFFSDLIVDRPL 447
           VLWL YLVD+LLLKK+F R+SKDER+LRSLKKR+D Y SAKEA  DPFF+D+ VD  +
Sbjct: 582 VLWLQYLVDILLLKKSFKRTSKDERELRSLKKRMDNYGSAKEATSDPFFTDMFVDHAI 639

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543018|ref|XP_002512572.1| Serine/threonine-protein kinase Haspin, putative [Ricinus communis] gi|223548533|gb|EEF50024.1| Serine/threonine-protein kinase Haspin, putative [Ricinus communis]

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 308/495 (62%), Positives = 375/495 (75%), Gaps = 55/495 (11%)

Query: 2   GNQNDTVPIPHLCSRLEKWLLSK--KFNYSCGPSSTLSKILETPY--------------- 44
           GNQ+D V IPHL SRLE WL++K  K N S  PS+ LSK+LE+P                
Sbjct: 153 GNQSDNVAIPHLSSRLESWLITKQLKLNESSAPSTALSKLLESPRMPLEPICADDFNTIN 212

Query: 45  ------------RNLESLQGEVNFSILSTPKKSSFKDTSDVHE----------RDINSQK 82
                        NL S+Q  +N   L TP++SS K  S++H           +  NS+ 
Sbjct: 213 LITPVKSSLKTNSNLHSMQNIIN---LITPEESSLKTNSNLHSMQKRINAYLLKKSNSRN 269

Query: 83  SNAVSESVKNESCEDIEVAVKKLSLASTSASLVVD-------------HSAPTKLLDLFS 129
           SN+V   +++E C+DIE+AVKKLSLASTS S   D              S P+ LLD+ S
Sbjct: 270 SNSVLSRLRDEGCKDIELAVKKLSLASTSTSADNDNVDPFSSLLAYCGQSVPSTLLDVIS 329

Query: 130 KYSDPENIVKVGEGTFGEAFLAGNTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN 189
           KY +P +I+KVGEGT+GEA+  G TVCK+VPIDG+L+VNGE QK+SEELLEEVVLS TLN
Sbjct: 330 KYCNPNDIIKVGEGTYGEAYRVGTTVCKIVPIDGELRVNGEVQKRSEELLEEVVLSRTLN 389

Query: 190 HLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRY 249
           HLR N+GD  NACTTF+E  +++VCQGPYD ALI+AW+ WDD H SEND+P+ FPE QRY
Sbjct: 390 HLRGNDGDACNACTTFIETLDLRVCQGPYDNALIRAWDRWDDAHGSENDHPRGFPEKQRY 449

Query: 250 IVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDS 309
           +VFVLQHGGKDLE+FVL N +EARSLLVQVT+ LAVAEAA+EFEHRDLHWGN+LLSRNDS
Sbjct: 450 VVFVLQHGGKDLENFVLSNFDEARSLLVQVTSALAVAEAAFEFEHRDLHWGNILLSRNDS 509

Query: 310 VTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQFDT 369
            T+ F+L+GK+MFVRT+GL+++IIDFTLSRINTGE+I FLDLS DP LF GPKGD+Q +T
Sbjct: 510 ATVKFILEGKEMFVRTYGLAISIIDFTLSRINTGENILFLDLSSDPYLFKGPKGDRQAET 569

Query: 370 YRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYNSA 429
           YRKMK+VTED WEGSFP+TNVLWL+YLVD+L+ KK+F+RSSK+ER+LRSLKKRLDKYNSA
Sbjct: 570 YRKMKEVTEDCWEGSFPRTNVLWLLYLVDILIQKKSFERSSKNERELRSLKKRLDKYNSA 629

Query: 430 KEAIFDPFFSDLIVD 444
           KEAIFD FFSDL+VD
Sbjct: 630 KEAIFDTFFSDLLVD 644

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780243|emb|CAN65736.1| hypothetical protein VITISV_037752 [Vitis vinifera]

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 287/441 (65%), Positives = 340/441 (77%), Gaps = 30/441 (6%)

Query: 37  SKILETPYRNLESLQGE-VNFSILSTPKKSSFKDTSDVHE----------------RDIN 79
           SKILETP   +E + G+  + S + TP+K+S +    +H                 R   
Sbjct: 207 SKILETPAMPMEPICGDGFDASTVKTPEKASPQVCLGLHSVQDRFNSDFMNKDVVGRQTG 266

Query: 80  SQKSNAVSESVKNESCEDIEVAVKKLSLASTSASLVVDH-------------SAPTKLLD 126
           SQKSN VS +  +E CEDI+VA+KKLSL S SASL  DH             SAP+ LLD
Sbjct: 267 SQKSNEVSLTTGDEGCEDIDVAIKKLSLTSRSASLGGDHWDSFSALLTVCEQSAPSTLLD 326

Query: 127 LFSKYSDPENIVKVGEGTFGEAFLAGNTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSW 186
           +FSKY DPE+IVK+GEGT+GEAF AG TVCK+VPIDGDL VNGE QK+S ELLEE +LS 
Sbjct: 327 VFSKYCDPESIVKIGEGTYGEAFRAGKTVCKIVPIDGDLLVNGEVQKRSGELLEEAILSR 386

Query: 187 TLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPEN 246
           TLNHLR + G   N+CT+F+E  +++VCQGPYDAALI+AWEDWD++H SEND+P+EFPE 
Sbjct: 387 TLNHLREDGGRVNNSCTSFIETLDLRVCQGPYDAALIRAWEDWDEQHGSENDHPREFPEK 446

Query: 247 QRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSR 306
           Q Y+VFVL+HGGKDLESFVLLN +E RSLLVQVT  LAVAEAAYEFEHRDLHWGN+LLSR
Sbjct: 447 QCYVVFVLEHGGKDLESFVLLNFDEVRSLLVQVTVALAVAEAAYEFEHRDLHWGNILLSR 506

Query: 307 NDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQ 366
            DS  + F L+GK MFV+TFGLS++IIDFTLSRINTGE I FLDLS DPELF GPKGDKQ
Sbjct: 507 KDSEMLQFTLEGKNMFVKTFGLSISIIDFTLSRINTGEAILFLDLSSDPELFKGPKGDKQ 566

Query: 367 FDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKY 426
            +TYRKMK++TED WEGSFPKTNVLWL YLVD+LLLKK+F R+SKDER+LRSLKKR+D Y
Sbjct: 567 SNTYRKMKEITEDFWEGSFPKTNVLWLQYLVDILLLKKSFKRTSKDERELRSLKKRMDNY 626

Query: 427 NSAKEAIFDPFFSDLIVDRPL 447
            SAKEA  DPFF+D+ VD  +
Sbjct: 627 GSAKEATSDPFFTDMFVDHAI 647

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571048|ref|XP_003553693.1| PREDICTED: serine/threonine-protein kinase haspin homolog C23C4.03-like [Glycine max]

 Score =  556 bits (1432), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 283/469 (60%), Positives = 355/469 (75%), Gaps = 26/469 (5%)

Query: 1   MGNQNDTVPIPHLCSRLEKWLLSKKFNYSCGPSSTLSKILETPYRNLESLQGEVNF---- 56
           +GN     PIP +CSRLEKWL S++ N  CGPSSTLSKIL+TP   LE+++ +++F    
Sbjct: 164 IGNMTQQEPIPAVCSRLEKWLHSRRLNPFCGPSSTLSKILDTPSTRLETIR-DIDFGASD 222

Query: 57  --SILSTPKKSSFKDTSDVHERDINSQKSNAVSESVK------NESCEDIEVAVKKLSLA 108
             ++  T + +S   T    E++ + +  + +  + K       E CEDIE  VKKLSL 
Sbjct: 223 LKTLERTDRSNSLLHTIKTEEKETSIENGSHLQTNEKMLFAQSGEGCEDIEAGVKKLSLV 282

Query: 109 STSASLVVDH-------------SAPTKLLDLFSKYSDPENIVKVGEGTFGEAFLAGNTV 155
           STS+S+  DH             SAP+ L D+FS+Y   E IVKVGEGT+GEAF   N V
Sbjct: 283 STSSSIDDDHINPFSVLLSICGQSAPSVLQDIFSRYCGSETIVKVGEGTYGEAFKINNYV 342

Query: 156 CKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQ 215
           CK+VP DG+ +VNGE QK+SEELLEEV+L  TLN LR  +GD+ N C+ F++  E +VCQ
Sbjct: 343 CKIVPFDGEFRVNGEVQKRSEELLEEVLLCKTLNQLRGKDGDSDNLCSAFIDCIEFRVCQ 402

Query: 216 GPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSL 275
           GPYDA+LIQAWEDWD +H SEND+PKEFP+ Q Y+VFV +HGGKDLESF LLN +EAR+L
Sbjct: 403 GPYDASLIQAWEDWDLEHGSENDHPKEFPDKQCYVVFVQEHGGKDLESFALLNFDEARAL 462

Query: 276 LVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDF 335
           LVQVTAGLAVAE+A+EFEHRDLHWGN+L+ R+DS T+ F LDGK M V+T GL ++IIDF
Sbjct: 463 LVQVTAGLAVAESAFEFEHRDLHWGNILVGRSDSETLQFTLDGKTMLVKTHGLIISIIDF 522

Query: 336 TLSRINTGEDIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVY 395
           TLSRINTG+ I +LDLS DP+LF GPKGDKQ +TYR+MK+VTED WEGS PKTNVLWL+Y
Sbjct: 523 TLSRINTGDSILYLDLSSDPDLFKGPKGDKQSETYRRMKEVTEDWWEGSCPKTNVLWLIY 582

Query: 396 LVDMLLLKKTFDRSSKDERDLRSLKKRLDKYNSAKEAIFDPFFSDLIVD 444
           LVD+LL+KK+F+R++K ERDLRSLKKRLDKY+SAKEAI DPFF+DL V+
Sbjct: 583 LVDILLMKKSFERTTKHERDLRSLKKRLDKYDSAKEAILDPFFTDLFVE 631

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30681147|ref|NP_172416.2| protein kinase family protein [Arabidopsis thaliana] gi|3482920|gb|AAC33205.1| Hypothetical protein [Arabidopsis thaliana] gi|332190323|gb|AEE28444.1| protein kinase family protein [Arabidopsis thaliana]

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 285/469 (60%), Positives = 354/469 (75%), Gaps = 33/469 (7%)

Query: 1   MGNQNDTVP-IPHLCSRLEKWLLSKKFNYSCGPSSTLSKILETPYRNLESLQGEVNFSIL 59
           MG Q   VP +PHL +RLEKWL+SKK N++CGPSSTLSKILE    + ES+     F  L
Sbjct: 138 MGEQ--VVPEMPHLSTRLEKWLISKKLNHTCGPSSTLSKILENSAIHQESVCDNDAFDSL 195

Query: 60  S--TPKKSSFKDTSDVHERDINSQKSNAVSESV-----KNESCEDIEVAVKKLSLASTSA 112
           S  TP KSS  +TS    R I S   N  +E V     K ES  D+E  +K+LSL S   
Sbjct: 196 SLKTPDKSSAGNTSVF--RLIPSCDENLAAEDVPVRKIKMESI-DLEDELKRLSLTS--- 249

Query: 113 SLVVDHS----------------APTKLLDLFSKYSDPENIVKVGEGTFGEAFLAGNTVC 156
            L+  H                  P+  ++ FSK+ +PE+IVK+GEGT+GEAF AG++VC
Sbjct: 250 DLIPTHQDFDQPILDLLSACGQMRPSNFIEAFSKFCEPESIVKIGEGTYGEAFRAGSSVC 309

Query: 157 KVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQG 216
           K+VPIDGD +VNGE QK+++ELLEEV+LSWTLN LR  E    N C T+++  +IK+CQG
Sbjct: 310 KIVPIDGDFRVNGEVQKRADELLEEVILSWTLNQLRECETTAQNLCPTYIKTQDIKLCQG 369

Query: 217 PYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLL 276
           PYD  LI+AWE+WD KH SEND+P +FPE Q Y++FVL+HGGKDLESFVLLN +EARSLL
Sbjct: 370 PYDPILIKAWEEWDAKHGSENDHP-DFPEKQCYVMFVLEHGGKDLESFVLLNFDEARSLL 428

Query: 277 VQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFT 336
           VQ TAGLAVAEAA+EFEHRDLHWGN+LLSRN+S T+ F+L+GKQ+ ++TFG+ ++IIDFT
Sbjct: 429 VQATAGLAVAEAAFEFEHRDLHWGNILLSRNNSDTLPFILEGKQVCIKTFGVQISIIDFT 488

Query: 337 LSRINTGEDIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYL 396
           LSRINTGE I FLDL+ DP LF GPKGDKQ +TYRKMK VTED WEGSF +TNVLWL+YL
Sbjct: 489 LSRINTGEKILFLDLTSDPYLFKGPKGDKQSETYRKMKAVTEDYWEGSFARTNVLWLIYL 548

Query: 397 VDMLLLKKTFDRSSKDERDLRSLKKRLDKYNSAKEAIFDPFFSDLIVDR 445
           VD+LL KK+F+RSSK ER+LRSLKKR++KY SAKEA+ DPFFSD+++D+
Sbjct: 549 VDILLTKKSFERSSKHERELRSLKKRMEKYESAKEAVSDPFFSDMLMDQ 597

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511731|ref|XP_003626154.1| Serine/threonine protein kinase haspin [Medicago truncatula] gi|355501169|gb|AES82372.1| Serine/threonine protein kinase haspin [Medicago truncatula]

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 292/481 (60%), Positives = 352/481 (73%), Gaps = 38/481 (7%)

Query: 2   GNQNDTVPIPHLCSRLEKWLLSKKFNYSCGPSSTLSKILETPYRNLESL----------- 50
           GN  D VP+P +CSRLEKWL +++ N   GPSSTLSKIL+TP   LE++           
Sbjct: 165 GNVTDDVPLPSICSRLEKWLHARRLNPRSGPSSTLSKILDTPTMKLETIYDRNDSDFRLR 224

Query: 51  ---QGEVNFSILSTPKKSS--FK----DTSDVHERDINSQKSNAVSES-----VKNESCE 96
              + E+ F  +     SS  F+    D S++    + + K+     S     +++ESCE
Sbjct: 225 SLDRSEMEFETIYDLDHSSSDFRLRSMDQSELSNSQLQNLKTRETRSSNDAILIRSESCE 284

Query: 97  DIEVAVKKLSLASTSASL------------VVDHSAPTKLLDLFSKYSDPENIVKVGEGT 144
           DIE  VKKLSL STS+S                 SAP+ L DLFS+YS  E +VKVGEGT
Sbjct: 285 DIEAGVKKLSLTSTSSSFDDHNNSFAVLLETCGQSAPSMLEDLFSRYSGSETVVKVGEGT 344

Query: 145 FGEAFLAGNTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT 204
           +GEAF  GN VCK+VP DGD +VNGE QK+S ELLEEV LS TLN LR ++G + N C T
Sbjct: 345 YGEAFKVGNCVCKIVPFDGDFRVNGEVQKRSVELLEEVFLSQTLNQLRGSDGVSNNLCRT 404

Query: 205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESF 264
           F+E  E +VCQG YDA LI+AWEDWD KH SEND+PKEFPE Q Y+VFV QHGGKDLESF
Sbjct: 405 FIESIEFRVCQGLYDADLIRAWEDWDRKHNSENDHPKEFPEQQCYMVFVQQHGGKDLESF 464

Query: 265 VLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSR-NDSVTMNFLLDGKQMFV 323
           VLLNI+EAR+LLVQV AGLAVAE+A+EFEHRDLHWGN+L+SR +DS T+ F LDGK + V
Sbjct: 465 VLLNIDEARTLLVQVAAGLAVAESAFEFEHRDLHWGNILVSRSDDSATLQFTLDGKNLLV 524

Query: 324 RTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEG 383
            T+GL ++IIDFTLSRI+TG  I FLDLS DP+LF GPKGDKQ +TYR+MK VTED WEG
Sbjct: 525 ETYGLIISIIDFTLSRISTGGSILFLDLSSDPDLFKGPKGDKQSETYRRMKAVTEDWWEG 584

Query: 384 SFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYNSAKEAIFDPFFSDLIV 443
           SFPKTNVLWLVYLVD+LL KK+F+R+SKDERDLRSLKKRLDKY SAKEAI DPFF+++ V
Sbjct: 585 SFPKTNVLWLVYLVDILLTKKSFERTSKDERDLRSLKKRLDKYASAKEAILDPFFTNMFV 644

Query: 444 D 444
           +
Sbjct: 645 E 645

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28393072|gb|AAO41970.1| unknown protein [Arabidopsis thaliana]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 284/469 (60%), Positives = 353/469 (75%), Gaps = 33/469 (7%)

Query: 1   MGNQNDTVP-IPHLCSRLEKWLLSKKFNYSCGPSSTLSKILETPYRNLESLQGEVNFSIL 59
           MG Q   VP +PHL +RLEKWL+SKK N++CGPSSTLSKILE    + ES+     F  L
Sbjct: 138 MGEQ--VVPEMPHLSTRLEKWLISKKLNHTCGPSSTLSKILENSAIHQESVCDNDAFDSL 195

Query: 60  S--TPKKSSFKDTSDVHERDINSQKSNAVSESV-----KNESCEDIEVAVKKLSLASTSA 112
           S  TP KSS  +TS    R I S   N  +E V     K ES  D+E  +K+LSL S   
Sbjct: 196 SLKTPDKSSAGNTSVF--RLIPSCDENLAAEDVPVRKIKMESI-DLEDELKRLSLTS--- 249

Query: 113 SLVVDHS----------------APTKLLDLFSKYSDPENIVKVGEGTFGEAFLAGNTVC 156
            L+  H                  P+  ++ FSK+ +PE+IVK+GEGT+GEAF AG++VC
Sbjct: 250 DLIPTHQDFDQPILDLLSACGQMRPSNFIEAFSKFCEPESIVKIGEGTYGEAFRAGSSVC 309

Query: 157 KVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQG 216
           K+VPIDGD +VNGE QK+++ELLEEV+LSWTLN LR  E    N C T+++  +IK+CQG
Sbjct: 310 KIVPIDGDFRVNGEVQKRADELLEEVILSWTLNQLRECETTAQNLCPTYIKTQDIKLCQG 369

Query: 217 PYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLL 276
           PYD  LI+AWE+WD KH SEND+P +FPE Q Y++FVL+HGGKDLESFVLLN +EARSLL
Sbjct: 370 PYDPILIKAWEEWDAKHGSENDHP-DFPEKQCYVMFVLEHGGKDLESFVLLNFDEARSLL 428

Query: 277 VQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFT 336
           VQ TAGLAVAEAA+EFEHRDLHWGN+ LSRN+S T+ F+L+GKQ+ ++TFG+ ++IIDFT
Sbjct: 429 VQATAGLAVAEAAFEFEHRDLHWGNIPLSRNNSDTLPFILEGKQVCIKTFGVQISIIDFT 488

Query: 337 LSRINTGEDIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYL 396
           LSRINTGE I FLDL+ DP LF GPKGDKQ +TYRKMK VTED WEGSF +TNVLWL+YL
Sbjct: 489 LSRINTGEKILFLDLTSDPYLFKGPKGDKQSETYRKMKAVTEDYWEGSFARTNVLWLIYL 548

Query: 397 VDMLLLKKTFDRSSKDERDLRSLKKRLDKYNSAKEAIFDPFFSDLIVDR 445
           VD+LL KK+F+RSSK ER+LRSLKKR++KY SAKEA+ DPFFSD+++D+
Sbjct: 549 VDILLTKKSFERSSKHERELRSLKKRMEKYESAKEAVSDPFFSDMLMDQ 597

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843738|ref|XP_002889750.1| hypothetical protein ARALYDRAFT_311988 [Arabidopsis lyrata subsp. lyrata] gi|297335592|gb|EFH66009.1| hypothetical protein ARALYDRAFT_311988 [Arabidopsis lyrata subsp. lyrata]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 274/464 (59%), Positives = 347/464 (74%), Gaps = 37/464 (7%)

Query: 1   MGNQNDTVP-IPHLCSRLEKWLLSKKFNYSCGPSSTLSKILETPYRNLESLQGEVNFSIL 59
           +G Q   VP +PHL +RLEKWL+SKK N +CGPSSTLSKILE    + ES      F  L
Sbjct: 138 LGEQ--VVPEMPHLSTRLEKWLISKKLNRTCGPSSTLSKILENSATHQESTCDNDAFDSL 195

Query: 60  STPKK--SSFKDTSDVHERDINSQKSNAVSESVKNESCEDIEVAVKKLSLASTSASLVVD 117
           ++  +   S  D+    +  +   K  A+          D+E  +K+LSL S    L+  
Sbjct: 196 TSVFRLIPSCDDSLAAEDVPVRKIKMEAI----------DLEDELKRLSLTS---DLIPT 242

Query: 118 H----------------SAPTKLLDLFSKYSDPENIVKVGEGTFGEAFLAGNTVCKVVPI 161
           H                + P+  ++ FSK+ +PE+IVK+GEGT+GEAF AG++VCK+VPI
Sbjct: 243 HQDFDQPFLDLLSACGQTQPSNFMEAFSKFCEPESIVKIGEGTYGEAFRAGSSVCKIVPI 302

Query: 162 DGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAA 221
           DGD++VNGE QK+++EL EEV+LSWTLN LR  E +  N+C TF++  +IKVCQGPYD  
Sbjct: 303 DGDVRVNGEVQKRADELHEEVILSWTLNKLRECETEAQNSCPTFIKTQDIKVCQGPYDPI 362

Query: 222 LIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTA 281
           LI+AWE+WD KH SEND+P +FPE QRY++FVL+HGGKDLESFVLLN  EARSLLV  TA
Sbjct: 363 LIKAWEEWDAKHGSENDHP-DFPEKQRYVMFVLEHGGKDLESFVLLNFGEARSLLV--TA 419

Query: 282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRIN 341
           GLAVAEA +EFEHRDLHWGN+LLSRN+S T+ F+L+GKQ+F++TFG+ V+IIDFTLSRIN
Sbjct: 420 GLAVAEAGFEFEHRDLHWGNILLSRNNSSTLPFILEGKQVFIKTFGVQVSIIDFTLSRIN 479

Query: 342 TGEDIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL 401
           TGE I FLDL+ DP LF GPKGDKQ +TYRKMK VTED WEGSF +TNVLWL+YLVD+LL
Sbjct: 480 TGEKILFLDLTCDPYLFKGPKGDKQSETYRKMKAVTEDYWEGSFARTNVLWLIYLVDILL 539

Query: 402 LKKTFDRSSKDERDLRSLKKRLDKYNSAKEAIFDPFFSDLIVDR 445
            KK+F+RSSKDER+LRSLKKR++KY SAKEA+ DPFFSD+++D+
Sbjct: 540 TKKSFERSSKDERELRSLKKRMEKYESAKEAVLDPFFSDMLMDQ 583

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435954|ref|XP_004135759.1| PREDICTED: serine/threonine-protein kinase haspin-like [Cucumis sativus]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 300/472 (63%), Positives = 351/472 (74%), Gaps = 33/472 (6%)

Query: 3   NQNDTVPIPHLCSRLEKWLLSKKFNYSCGPSSTLSKILETPYRNLESLQG-EVNFSILST 61
           +Q D+  IP LCSR+EKWL+SKK  YS  PSSTLSKILETP  ++E + G  ++   L T
Sbjct: 152 SQFDSSTIPSLCSRIEKWLISKKSKYSLAPSSTLSKILETPLGSIEPIGGIHLDKFKLKT 211

Query: 62  PKKS-----------------SFKDTSDVHERDINSQKSNAVSESVKNESCEDIEVAVKK 104
           P+ S                 S  D  D  + D N  +SN  +E ++ E  EDIEVAVKK
Sbjct: 212 PENSARDRDAHWCSIQRRFIFSINDI-DALKIDSNDNRSNR-AEEMRTEDREDIEVAVKK 269

Query: 105 LSLASTSASL-------------VVDHSAPTKLLDLFSKYSDPENIVKVGEGTFGEAFLA 151
           LSL STS S              V   S P+ L D+FS Y + E IVKVGEGT+GEAF  
Sbjct: 270 LSLTSTSTSFHKYDLDPLSALLAVCGQSTPSTLKDVFSNYCELETIVKVGEGTYGEAFKV 329

Query: 152 GNTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEI 211
           GNTVCKVVPIDGDLKVNGE QK+S ELLEEV+LS TLN LR NE    N CTTF+   ++
Sbjct: 330 GNTVCKVVPIDGDLKVNGEIQKRSVELLEEVILSRTLNSLRSNERCADNFCTTFIRTIDL 389

Query: 212 KVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINE 271
           +VCQG YDA L++AWEDWD+KH SEND+PKEFPE Q Y+VFVLQHGGKDLESFVLLN +E
Sbjct: 390 RVCQGSYDAVLVKAWEDWDEKHGSENDHPKEFPEKQLYVVFVLQHGGKDLESFVLLNYDE 449

Query: 272 ARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVT 331
           A+SLLVQVTA LAVAEAAY+FEHRDLHWGNVLLSRND   + F L+ K M V+TFGL ++
Sbjct: 450 AQSLLVQVTAALAVAEAAYQFEHRDLHWGNVLLSRNDYEALQFTLESKNMTVKTFGLQIS 509

Query: 332 IIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVL 391
           IIDFTLSRINTGEDI FLDLS DP LF GP+GD+Q +TYRKMK+VT D WEGSFP+TNVL
Sbjct: 510 IIDFTLSRINTGEDILFLDLSSDPYLFKGPRGDRQSETYRKMKEVTGDCWEGSFPRTNVL 569

Query: 392 WLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYNSAKEAIFDPFFSDLIV 443
           WL+YLVD+LLLKK+F+RSSK ER+LR+ KKRLDKY S KEAI+D FFS+LIV
Sbjct: 570 WLLYLVDILLLKKSFERSSKHERELRAFKKRLDKYTSTKEAIYDQFFSELIV 621

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	447
TAIR|locus:2012340	599	Haspin "Haspin-related gene" [	0.991	0.739	0.556	1.7e-128
UNIPROTKB|Q2KIP2	781	GSG2 "Serine/threonine-protein	0.657	0.376	0.363	3.6e-42
UNIPROTKB|Q8TF76	798	GSG2 "Serine/threonine-protein	0.635	0.355	0.355	5.2e-42
UNIPROTKB|F1MG77	781	GSG2 "Serine/threonine-protein	0.657	0.376	0.363	7.8e-42
ZFIN|ZDB-GENE-090313-379	1092	si:dkeyp-26a9.2 "si:dkeyp-26a9	0.671	0.274	0.353	9.7e-41
UNIPROTKB|E2R3P1	781	GSG2 "Uncharacterized protein"	0.633	0.362	0.350	3.4e-40
MGI|MGI:1194498	754	Gsg2 "germ cell-specific gene	0.642	0.380	0.35	8e-40
WB|WBGene00007258	949	C01H6.9 [Caenorhabditis elegan	0.706	0.332	0.333	1.6e-38
FB|FBgn0046706	566	Haspin "Haspin" [Drosophila me	0.559	0.441	0.339	2.1e-38
WB|WBGene00021214	434	Y18H1A.10 [Caenorhabditis eleg	0.686	0.707	0.305	1.7e-36

TAIR|locus:2012340 Haspin "Haspin-related gene" [Arabidopsis thaliana (taxid:3702)]

 Score = 1261 (449.0 bits), Expect = 1.7e-128, P = 1.7e-128
 Identities = 257/462 (55%), Positives = 323/462 (69%)

Query:     1 MGNQNDTVPIPHLCSRLEKWLLSKKFNYSCGPSSTLSKILETPYRNLESLQGEVNFSILS 60
             MG Q     +PHL +RLEKWL+SKK N++CGPSSTLSKILE    + ES+     F  LS
Sbjct:   138 MGEQV-VPEMPHLSTRLEKWLISKKLNHTCGPSSTLSKILENSAIHQESVCDNDAFDSLS 196

Query:    61 --TPKKSSFKDTSD---VHERDINSQKSNAVSESVKNESCE-DIEVXXXXXXXXXXXXXX 114
               TP KSS  +TS    +   D N    +     +K ES + + E+              
Sbjct:   197 LKTPDKSSAGNTSVFRLIPSCDENLAAEDVPVRKIKMESIDLEDELKRLSLTSDLIPTHQ 256

Query:   115 XXDH------SA-----PTKLLDLFSKYSDPENIVKVGEGTFGEAFLAGNTVCKVVPIDG 163
               D       SA     P+  ++ FSK+ +PE+IVK+GEGT+GEAF AG++VCK+VPIDG
Sbjct:   257 DFDQPILDLLSACGQMRPSNFIEAFSKFCEPESIVKIGEGTYGEAFRAGSSVCKIVPIDG 316

Query:   164 DLKVNGEAQKKSXXXXXXXXXSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALI 223
             D +VNGE QK++         SWTLN LR  E    N C T+++  +IK+CQGPYD  LI
Sbjct:   317 DFRVNGEVQKRADELLEEVILSWTLNQLRECETTAQNLCPTYIKTQDIKLCQGPYDPILI 376

Query:   224 QAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGL 283
             +AWE+WD KH SEND+P +FPE Q Y++FVL+HGGKDLESFVLLN +EARSLLVQ TAGL
Sbjct:   377 KAWEEWDAKHGSENDHP-DFPEKQCYVMFVLEHGGKDLESFVLLNFDEARSLLVQATAGL 435

Query:   284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG 343
             AVAEAA+EFEHRDLHWGN+LLSRN+S T+ F+L+GKQ+ ++TFG+ ++IIDFTLSRINTG
Sbjct:   436 AVAEAAFEFEHRDLHWGNILLSRNNSDTLPFILEGKQVCIKTFGVQISIIDFTLSRINTG 495

Query:   344 EDIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNXXXXXXXXXXXXXK 403
             E I FLDL+ DP LF GPKGDKQ +TYRKMK VTED WEGSF +TN             K
Sbjct:   496 EKILFLDLTSDPYLFKGPKGDKQSETYRKMKAVTEDYWEGSFARTNVLWLIYLVDILLTK 555

Query:   404 KTFDRSSKDERDLRSLKKRLDKYNSAKEAIFDPFFSDLIVDR 445
             K+F+RSSK ER+LRSLKKR++KY SAKEA+ DPFFSD+++D+
Sbjct:   556 KSFERSSKHERELRSLKKRMEKYESAKEAVSDPFFSDMLMDQ 597

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007067 "mitosis" evidence=IMP

GO:0035402 "histone kinase activity (H3-T11 specific)" evidence=IDA

GO:0035407 "histone H3-T11 phosphorylation" evidence=IDA

GO:0072354 "histone kinase activity (H3-T3 specific)" evidence=IDA

GO:0072355 "histone H3-T3 phosphorylation" evidence=IDA

GO:0006260 "DNA replication" evidence=RCA

GO:0006270 "DNA replication initiation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

UNIPROTKB|Q2KIP2 GSG2 "Serine/threonine-protein kinase haspin" [Bos taurus (taxid:9913)]

 Score = 453 (164.5 bits), Expect = 3.6e-42, P = 3.6e-42
 Identities = 112/308 (36%), Positives = 160/308 (51%)

Query:   128 FSKYSDPENIV---KVGEGTFGEAF--LAGNT--VCKVVPIDGDLKVNGEAQKKSXXXXX 180
             FS Y   E +    K+GEG FGE F  +  +T    K++ I+G   VNG  QK       
Sbjct:   458 FSDYLSEEKLECCEKIGEGVFGEVFQTVTNHTPVALKIIAIEGQNLVNGAHQKTFEEILP 517

Query:   181 XXXXSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNP 240
                 S  L+ L     +  N    F+ +  +   QG Y   L+QAW+ +     S ND P
Sbjct:   518 EIIISKELSLL---SDEACNRTEGFIGLNSVHCVQGSYPPLLLQAWDHYHSTKGSANDRP 574

Query:   241 KEFPENQRYIVFVLQHGGKDLESF--VLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLH 298
               F E+Q +IV   + GG DLE     L +I  A+S+L Q+TA LAVAEA+  FEHRDLH
Sbjct:   575 DFFREDQLFIVLEFEFGGIDLEQMRKKLSSIATAKSILHQITASLAVAEASLHFEHRDLH 634

Query:   299 WGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELF 358
             WGNVLL +     +++ L+GK+  + T GL V IID+TLSR+     + F D+S+D +LF
Sbjct:   635 WGNVLLKKTSLKELHYTLNGKKSSIPTRGLQVNIIDYTLSRLERDGIVVFCDISRDEDLF 694

Query:   359 SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNXXXXXXXXXXXXXKKTFDRSSKDERDLRS 418
              G +GD QF+ YR M+K   + W    P  N             + TF +S  +   L+ 
Sbjct:   695 MG-QGDYQFEIYRLMRKENNNCWGEYHPYNNVLWLHYLTDKILNQMTF-KSKHNTPALKR 752

Query:   419 LKKRLDKY 426
             +KK++  +
Sbjct:   753 MKKQIQHF 760

GO:0090231 "regulation of spindle checkpoint" evidence=ISS

GO:0007064 "mitotic sister chromatid cohesion" evidence=ISS

GO:0005819 "spindle" evidence=ISS

GO:0005813 "centrosome" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0072354 "histone kinase activity (H3-T3 specific)" evidence=ISS

GO:0071459 "protein localization to chromosome, centromeric region" evidence=ISS

GO:2000751 "histone H3-T3 phosphorylation involved in chromosome passenger complex localization to kinetochore" evidence=ISS

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q8TF76 GSG2 "Serine/threonine-protein kinase haspin" [Homo sapiens (taxid:9606)]

 Score = 452 (164.2 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 105/295 (35%), Positives = 161/295 (54%)

Query:   139 KVGEGTFGEAF--LAGNT--VCKVVPIDGDLKVNGEAQKKSXXXXXXXXXSWTLNHLRRN 194
             K+GEG FGE F  +A +T    K++ I+G   VNG  QK           S  L+ L   
Sbjct:   489 KIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLL--- 545

Query:   195 EGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVL 254
              G+  N    F+ +  +   QG Y   L++AW+ ++    S ND P  F ++Q +IV   
Sbjct:   546 SGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEF 605

Query:   255 QHGGKDLESF--VLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTM 312
             + GG DLE     L ++  A+S+L Q+TA LAVAEA+  FEHRDLHWGNVLL +     +
Sbjct:   606 EFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKKTSLKKL 665

Query:   313 NFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQFDTYRK 372
             ++ L+GK   + + GL V+IID+TLSR+     + F D+S D +LF+G  GD QFD YR 
Sbjct:   666 HYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGD-GDYQFDIYRL 724

Query:   373 MKKVTEDQWEGSFPKTNXXXXXXXXXXXXXKKTFDRSSKDERDLRSLKKRLDKYN 427
             MKK   ++W    P +N             + TF ++  +   ++ +K+++ +++
Sbjct:   725 MKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTF-KTKCNTPAMKQIKRKIQEFH 778

GO:0003677 "DNA binding" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0007243 "intracellular protein kinase cascade" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0071459 "protein localization to chromosome, centromeric region" evidence=IMP

GO:0007064 "mitotic sister chromatid cohesion" evidence=IMP

GO:0090231 "regulation of spindle checkpoint" evidence=IMP

GO:0072354 "histone kinase activity (H3-T3 specific)" evidence=IMP

GO:0005819 "spindle" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:2000751 "histone H3-T3 phosphorylation involved in chromosome passenger complex localization to kinetochore" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|F1MG77 GSG2 "Serine/threonine-protein kinase haspin" [Bos taurus (taxid:9913)]

 Score = 450 (163.5 bits), Expect = 7.8e-42, P = 7.8e-42
 Identities = 112/308 (36%), Positives = 159/308 (51%)

Query:   128 FSKYSDPENIV---KVGEGTFGEAF--LAGNT--VCKVVPIDGDLKVNGEAQKKSXXXXX 180
             FS Y   E +    K+GEG FGE F  +  +T    K++ I+G   VNG  QK       
Sbjct:   458 FSDYLSEEKLECCEKIGEGVFGEVFQTVTNHTPVALKIIAIEGQDLVNGAHQKTFEEILP 517

Query:   181 XXXXSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNP 240
                 S  L+ L     +  N    F+ +  +   QG Y   L+QAW+ +     S ND P
Sbjct:   518 EIIISKELSLL---SDEACNRTEGFIGLNSVHCVQGSYPPLLLQAWDHYHSTKGSANDRP 574

Query:   241 KEFPENQRYIVFVLQHGGKDLESF--VLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLH 298
               F E+Q +IV   + GG DLE     L +I  A+S+L Q+TA LAVAEA+  FEHRDLH
Sbjct:   575 DFFGEDQLFIVLEFEFGGIDLEQMRKKLSSIATAKSILHQITASLAVAEASLHFEHRDLH 634

Query:   299 WGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELF 358
             WGNVLL +     +++ L+GK   + T GL V IID+TLSR+     + F D+S+D +LF
Sbjct:   635 WGNVLLKKTSLKELHYTLNGKTSSIPTRGLQVNIIDYTLSRLERDGIVVFCDISRDEDLF 694

Query:   359 SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNXXXXXXXXXXXXXKKTFDRSSKDERDLRS 418
              G +GD QF+ YR M+K   + W    P  N             + TF +S  +   L+ 
Sbjct:   695 MG-QGDYQFEIYRLMRKENNNCWGEYHPYNNVLWLHYLTDKILNQMTF-KSKHNTPALKR 752

Query:   419 LKKRLDKY 426
             +KK++  +
Sbjct:   753 MKKQIQHF 760

GO:0090231 "regulation of spindle checkpoint" evidence=IEA

GO:0072354 "histone kinase activity (H3-T3 specific)" evidence=IEA

GO:0071459 "protein localization to chromosome, centromeric region" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0007064 "mitotic sister chromatid cohesion" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

ZFIN|ZDB-GENE-090313-379 si:dkeyp-26a9.2 "si:dkeyp-26a9.2" [Danio rerio (taxid:7955)]

 Score = 444 (161.4 bits), Expect = 9.7e-41, P = 9.7e-41
 Identities = 112/317 (35%), Positives = 164/317 (51%)

Query:   135 ENIVKVGEGTFGEAFLAGN-----TVCKVVPIDGDLKVNGEAQKKSXXXXXXXXXSWTLN 189
             +++ K+GEGTFGE F   N        K++P++G  +VNGE QK           S  L+
Sbjct:   779 KHLNKIGEGTFGEVFSTINDSNESVALKIIPVEGSQQVNGEHQKTFGEILHEIIISKELS 838

Query:   190 HLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRY 249
              L   E    N    F+ +  +   +G Y  AL++AW+ +D +  SEND P  F + Q +
Sbjct:   839 SLNLKE---FNKSDGFIGLNNLHCVRGCYPEALLKAWDKFDHQKGSENDRPDFFDDEQLF 895

Query:   250 IVFVLQHGGKDLESF--VLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRN 307
             ++   + GG DLE+    L ++ +A+S+L QVTA LAVAE A  FEHRDLHWGN+L+   
Sbjct:   896 LILEFEFGGSDLENMNGKLSSMAQAKSVLHQVTASLAVAEQALCFEHRDLHWGNILVKNV 955

Query:   308 DSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQF 367
                   F+L+G    + T G+ V IID++LSR+         D+S D ELF G +GD QF
Sbjct:   956 KHKHNEFILNGTVHCIETRGVHVNIIDYSLSRLEIDGLTVSCDISSDEELFMG-QGDYQF 1014

Query:   368 DTYRKMKKVTEDQWEGSFPKTNXXXXXXXXXXXXXKKTFDRS-SKDERDLRS----LKKR 422
             + YR MKK  ++ W    P +N                 +++ S  +R L+S     K  
Sbjct:  1015 EIYRLMKKENKNCWSAYNPHSNVLWLHYLADKLLSMNYRNKTQSSQQRTLKSALNAFKSE 1074

Query:   423 LDKYNSAKEAIFD-PFF 438
             +  Y SA EA+    FF
Sbjct:  1075 IMNYPSATEALMKCSFF 1091

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E2R3P1 GSG2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 435 (158.2 bits), Expect = 3.4e-40, P = 3.4e-40
 Identities = 103/294 (35%), Positives = 153/294 (52%)

Query:   139 KVGEGTFGEAF--LAGNT--VCKVVPIDGDLKVNGEAQKKSXXXXXXXXXSWTLNHLRRN 194
             K+GEG FGE F  +  +T    K++ I+G   VNG  QK           S  L+ L   
Sbjct:   472 KIGEGVFGEVFQTIVNHTPVALKIIAIEGPDLVNGAHQKTFEEILPEIIISKELSLL--- 528

Query:   195 EGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVL 254
               +  N    F+ +  +   QG Y   L++AW+ ++    S ND P  F ENQ +IV   
Sbjct:   529 SDEVYNRTEGFIGLNSVHCVQGSYPPLLLRAWDHYNSTKGSANDRPDFFEENQLFIVLEF 588

Query:   255 QHGGKDLESF--VLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTM 312
             + GG +LE     L ++  A+S+L Q+TA LAVAEA+  FEHRDLHWGNVLL +     +
Sbjct:   589 EFGGTELEQMRTKLSSMATAKSILHQITASLAVAEASLHFEHRDLHWGNVLLKKTSVKEL 648

Query:   313 NFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQFDTYRK 372
              + L+GK   + T GL V IID+TLSR+     + F D+S D +LF+G +GD QF+ YR 
Sbjct:   649 RYTLNGKTSTIPTHGLQVNIIDYTLSRLERDGIVVFCDISMDEDLFTG-EGDYQFEIYRL 707

Query:   373 MKKVTEDQWEGSFPKTNXXXXXXXXXXXXXKKTFDRSSKDERDLRSLKKRLDKY 426
             M+K   + W    P  N             + TF +   +   ++ +K+++  +
Sbjct:   708 MRKENNNCWGEYHPYNNVLWLHYLTDKILKQMTF-KIKCNTPAMKQMKRKIQHF 760

GO:0090231 "regulation of spindle checkpoint" evidence=IEA

GO:0072354 "histone kinase activity (H3-T3 specific)" evidence=IEA

GO:0071459 "protein localization to chromosome, centromeric region" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0007064 "mitotic sister chromatid cohesion" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

MGI|MGI:1194498 Gsg2 "germ cell-specific gene 2" [Mus musculus (taxid:10090)]

 Score = 431 (156.8 bits), Expect = 8.0e-40, P = 8.0e-40
 Identities = 105/300 (35%), Positives = 155/300 (51%)

Query:   135 ENIVKVGEGTFGEAFLAGN----TVCKVVPIDG-DLKVNGEAQKKSXXXXXXXXXSWTLN 189
             E   K+GEG FGE F   N       K++ I+G DL VNG  QK           S  L+
Sbjct:   441 ERCEKIGEGVFGEVFQIINDQAPVALKIIAIEGLDL-VNGSHQKTFEEILPEIIISKELS 499

Query:   190 HLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRY 249
              L     +  N    F+ +  +   QG Y   L++AW+ ++    S ND P  F E+Q +
Sbjct:   500 LL---SSEAYNRTEGFIGLNSVHCVQGLYPPLLLKAWDHYNTTKRSANDRPDFFQEDQLF 556

Query:   250 IVFVLQHGGKDLESFV--LLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRN 307
             I+   + GG DLE     L ++  A+S+L Q+TA LAVAEA+  FEHRDLHWGNVLL + 
Sbjct:   557 IILEFEFGGVDLERMKTKLSSVATAKSILHQITASLAVAEASLHFEHRDLHWGNVLLKKT 616

Query:   308 DSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQF 367
             +   + + L+GK   + T GL V IID+TLSR+     + F D+S + +LF+G +GD QF
Sbjct:   617 NLKELRYTLNGKTSTIPTHGLQVNIIDYTLSRLERDGIVVFCDISAEEDLFTG-EGDYQF 675

Query:   368 DTYRKMKKVTEDQWEGSFPKTNXXXXXXXXXXXXXKKTFDRSSKDERDLRSLKKRLDKYN 427
             + YR M+K  ++ W    P  N             K  F ++      ++ ++K L  ++
Sbjct:   676 EIYRLMRKENKNCWGEYHPYNNVLWLHYLTDKILNKMKF-KTKCQSAAMKQIRKNLQHFH 734

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IDA

GO:0004672 "protein kinase activity" evidence=ISO

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0005524 "ATP binding" evidence=ISO;IDA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005819 "spindle" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=ISO;IDA

GO:0007049 "cell cycle" evidence=IDA

GO:0007064 "mitotic sister chromatid cohesion" evidence=ISO

GO:0007243 "intracellular protein kinase cascade" evidence=ISO;IDA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0071459 "protein localization to chromosome, centromeric region" evidence=ISO

GO:0072354 "histone kinase activity (H3-T3 specific)" evidence=ISO

GO:0090231 "regulation of spindle checkpoint" evidence=ISO

GO:2000751 "histone H3-T3 phosphorylation involved in chromosome passenger complex localization to kinetochore" evidence=ISO

WB|WBGene00007258 C01H6.9 [Caenorhabditis elegans (taxid:6239)]

 Score = 422 (153.6 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 112/336 (33%), Positives = 168/336 (50%)

Query:   122 TKLLDLFSKYS-DPENIVKVGEGTFGEAFLA---GNTVC-KVVPIDGDL-------KVNG 169
             +K  D   K + D   + K+GEG +GE F     G  V  K+VP + D        + + 
Sbjct:   604 SKTWDSLPKSALDGRRVKKLGEGAYGEVFSTIWDGKPVAIKIVPFEKDGCNRQYFGEYHS 663

Query:   170 EAQKKSXXXXXXXXXSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDW 229
             E  + S            L+ LR  + D  N+   F+EM   +V  G Y   L+ AW+ +
Sbjct:   664 EEMQTSDVVLPEVIVMKELSALR--DEDAWNSTPNFIEMISAEVVMGKYPKGLLSAWDSY 721

Query:   230 DDKHCSENDNPKEFPE-NQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEA 288
             D    SEN  P  +   +Q +I+FV  +GG  LE FVL + NE  S++ Q+   +  AEA
Sbjct:   722 DKLKESENTRPDVYSSIDQNFILFVSANGGIALEDFVLESENELFSIIHQLVLSMNAAEA 781

Query:   289 AYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFF 348
             A EFEHRDLH GNVL+ RN    + + + G+++ + T G+ V IIDFTLSRI+ G    +
Sbjct:   782 ALEFEHRDLHLGNVLIDRNGVKELYYTVHGQKVPLSTHGIKVNIIDFTLSRISKGATTVY 841

Query:   349 LDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNXXXXXXXXXXXXXKKTFDR 408
              DL  DP +F G + D QF+ YR+M+K  +  W+    +TN              K   +
Sbjct:   842 WDLENDPAIFEG-QDDPQFEVYREMRKNCKSNWKKFSRRTNLMWIVYIANRLIDTKICPK 900

Query:   409 ---SSKDERDLRSLKKRLDKYNSAKEAIF-DPFFSD 440
                + K   +L+ L  R  ++ S  E++  + FFSD
Sbjct:   901 GLLTEKRRMELKVLFDRFAEFGSCGESLTNEEFFSD 936

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

FB|FBgn0046706 Haspin "Haspin" [Drosophila melanogaster (taxid:7227)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 90/265 (33%), Positives = 141/265 (53%)

Query:   136 NIVKVGEGTFGEAFLAGNT-----------VCKVVPIDGDLKVNGEAQKKSXXXXXXXXX 184
             N  K+GEG +GE F                V K++P++G   +NGE QK           
Sbjct:   250 NTKKIGEGAYGEVFRCSRNQEVLKDHISDIVLKIIPLEGSTVINGEKQKTFSQILPEIII 309

Query:   185 SWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFP 244
             +  +  LR ++ ++ N    FV + ++ + +G Y    I+ WE +D++  SEND+P+ F 
Sbjct:   310 TKKMCSLRTSKTNSTNG---FVSIQKVSLVKGRYPPHFIKLWEKYDNEKGSENDHPELFG 366

Query:   245 ENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLL 304
             +NQ + V  L+  G D+ +F  LN  ++   L Q+   LAV E  Y+FEHRDLH GN+L+
Sbjct:   367 DNQLFAVLELKFAGSDMANFKFLNSEQSYYALQQIILALAVGEEEYQFEHRDLHLGNILI 426

Query:   305 SRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGD 364
                +   +        + + + G++VTIID+TLSR+   +  +F DLS+D ELF    GD
Sbjct:   427 EYTNKKHIVCTFKSSNLTLLSKGVNVTIIDYTLSRVTINDCCYFNDLSRDEELFQAT-GD 485

Query:   365 KQFDTYRKMKKVTEDQWEGSFPKTN 389
              Q+D YR M+   ++ W    PKTN
Sbjct:   486 YQYDVYRMMRNELKNNWSSFSPKTN 510

GO:0006468 "protein phosphorylation" evidence=IEA;NAS

GO:0004674 "protein serine/threonine kinase activity" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

WB|WBGene00021214 Y18H1A.10 [Caenorhabditis elegans (taxid:6239)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 97/318 (30%), Positives = 160/318 (50%)

Query:   133 DPENIVKVGEGTFGEAFLA---GNTVC-KVVPIDGDLKVNGEAQKKSXXXXXXXXXSWTL 188
             D   + K+GEG +GE F     G  V  KV+P + +    G    +             +
Sbjct:   104 DARKVKKLGEGAYGEVFSTVWNGRPVAIKVLPFENNGCFYGNQSVEIPTTHAVLSEVIVM 163

Query:   189 NHLRR-NEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFP-EN 246
               L    + ++ N+   F+EM   ++  G Y   L++AW+ +D  + SE+  P  +  E+
Sbjct:   164 KELSALRDPNSWNSTPNFIEMISAQIVMGEYPKGLLRAWDAYDKLNESEHLRPDVYSSEH 223

Query:   247 QRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSR 306
             Q +I+FV  +GG  L  FVL + +E  S++ Q+   +  AEAA EFEHRDL+  NVL+ R
Sbjct:   224 QNFILFVSANGGISLADFVLESEDELFSIIHQLVLSMVAAEAALEFEHRDLNLSNVLIDR 283

Query:   307 NDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQ 366
             N    +++ + G+++ +RT G+ V IIDFTLSRI+      + DL +D  +F GP    Q
Sbjct:   284 NGVEELSYTVHGQKIPLRTHGIKVNIIDFTLSRISKDSTTIYWDLEEDTTIFEGPDAP-Q 342

Query:   367 FDTYRKMKKVTEDQWEGSFPKTNXXXXXXXXXXXXXKKTFDR---SSKDERDLRSLKKRL 423
             F+ YR+M++     WE    +TN              +       + K  ++L+ L  RL
Sbjct:   343 FEVYREMRENCRGNWEKFSRRTNLMWIVYIANRLIDTEICPEGLFTDKRRKELKHLFDRL 402

Query:   424 DKYNSAKEAIFDP-FFSD 440
              ++ S +E++ D  F+ D
Sbjct:   403 AEFGSCEESLTDAEFYRD 420

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	447
COG5072	488	COG5072, ALK1, Serine/threonine kinase of the hasp	2e-30
pfam12330	99	pfam12330, DUF3635, Domain of unknown function (DU	6e-12

>gnl|CDD|227404 COG5072, ALK1, Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

 Score =  122 bits (307), Expect = 2e-30
 Identities = 86/375 (22%), Positives = 141/375 (37%), Gaps = 63/375 (16%)

Query: 59  LSTPKKSSFKDTSDVHERDINSQKSNAVSESVKNESCEDIEVAVK-----KLSLASTSAS 113
            S   K S +    V +R      S  V+   K + C   +         KL+ +++  S
Sbjct: 126 NSLKHKPSHRSLQKVKQRR-KGPFSQFVNSQTK-KICPVPDQVSSDKIQAKLADSTSLVS 183

Query: 114 LVVDHSAPTKLLDLFSKYSDPENIVKVGEGTFGEAFLAGNTVCKVVPIDGDLKVNGEAQK 173
           LV     P    D     +D  N+V++ +    + F   + V  V+ +   L        
Sbjct: 184 LVSPFGLPGNAQD-----ADVLNLVQILQWCDVKGFANLHQVVVVLGLYPSLN------- 231

Query: 174 KSEELLEEVVLS---WTLNHLRRNEGDTLNACTT---FVEMFEIKVCQGPYDAALIQAWE 227
               L E   LS   W  N  ++    +    T    F+ + E++         L Q   
Sbjct: 232 ----LEESDQLSSNNWQENICKKVSLGSTQDYTVDCLFLSLTELE------HLELRQ--- 278

Query: 228 DWDDKHCSENDNPKEFPENQ-RYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVA 286
            W +      +  K    ++  Y+    +  G  +         E  S      + L + 
Sbjct: 279 -WRECGSVFLETLKVVSLDETLYLYLHFKDHGTPISIIKADRSEEELSFFWSCISILDIL 337

Query: 287 EAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI 346
           E  + FEHR+L   N+L+   +                     VT+IDF LSR++  + I
Sbjct: 338 EKKFPFEHRNLTLDNILIDEGN---------------------VTLIDFKLSRLSYSQGI 376

Query: 347 FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTF 406
              +    P+LF+G   D QF+ YR M+++ + +W    P TNVLWL YL   LL KK  
Sbjct: 377 ISYNRLDHPDLFNG-VDDYQFEIYRLMRRLLKGRWAQFEPITNVLWLYYLSHQLLKKKNL 435

Query: 407 D-RSSKDERDLRSLK 420
               ++  R +R LK
Sbjct: 436 SSPKTETNRLMRRLK 450

Length = 488

>gnl|CDD|204885 pfam12330, DUF3635, Domain of unknown function (DUF3635)

 Score = 61.4 bits (149), Expect = 6e-12
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 2/69 (2%)

Query: 355 PELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDER 414
            +LF+G KGD QF+ YR M+K  +++W    P TNVLWL YL D LL K  F +S  +  
Sbjct: 1   EDLFNG-KGDYQFEIYRLMRKELKNRWSEFEPYTNVLWLHYLSDKLLDKMKF-KSKCNTA 58

Query: 415 DLRSLKKRL 423
             R + K++
Sbjct: 59  ANRQIMKKI 67

This family may be a potential Haspin-related leucine-zipper. A leucine zipper was proposed to be present towards the C-terminus of human Haspin, (up-stream of the current family); however, as this domain would appear to span several helices and be largely within a loop structure, the actual zipper might be further downstream, and be this family, which is the very C-terminal part of the Sch. pombe sequence. Length = 99

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	447
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
KOG0690	516	consensus Serine/threonine protein kinase [Signal	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
PTZ00284	467	protein kinase; Provisional	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
KOG0586	596	consensus Serine/threonine protein kinase [General	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.98
PTZ00267	478	NIMA-related protein kinase; Provisional	99.98
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.98
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.98
PHA03207	392	serine/threonine kinase US3; Provisional	99.98
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.98
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.98
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.98
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.98
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.97
KOG0584	632	consensus Serine/threonine protein kinase [General	99.97
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.97
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.97
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.97
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.97
PHA03211	461	serine/threonine kinase US3; Provisional	99.97
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.97
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.97
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.97
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.97
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.97
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.97
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.97
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.97
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.97
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.97
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.97
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.97
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.97
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.97
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.97
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.97
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.97
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.97
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.97
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.97
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.97
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.97
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.97
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.97
PHA03210	501	serine/threonine kinase US3; Provisional	99.97
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.97
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.97
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.97
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.97
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.97
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.97
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.97
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.97
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.97
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.97
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.97
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.97
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.97
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.97
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.97
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.97
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.97
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.97
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.97
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.97
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.97
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.97
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.97
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.97
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.97
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.97
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.97
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.97
PHA02988	283	hypothetical protein; Provisional	99.97
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.97
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.97
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.97
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.97
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.97
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.97
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.97
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.97
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.97
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.97
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.97
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.97
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.97
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.97
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.97
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.97
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.97
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.97
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.97
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.97
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.97
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.97
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.97
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.97
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.97
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.97
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.97
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.97
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.97
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.97
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.97
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.97
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.97
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.96
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.96
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.96
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.96
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.96
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.96
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.96
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.96
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.96
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.96
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.96
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.96
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.96
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.96
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.96
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.96
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.96
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.96
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.96
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.96
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.96
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.96
PLN00009	294	cyclin-dependent kinase A; Provisional	99.96
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.96
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.96
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.96
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.96
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.96
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.96
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.96
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.96
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.96
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.96
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.96
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.96
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.96
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.96
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.96
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.96
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.96
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.96
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.96
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.96
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.96
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.96
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.96
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.96
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.96
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.96
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.96
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.96
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.96
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.96
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.96
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.96
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.96
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.96
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.96
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.96
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.96
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.96
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.96
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.96
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.96
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.96
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.96
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.96
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.96
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.96
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.96
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.96
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.96
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.96
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.96
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.96
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.96
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.96
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.96
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.96
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.96
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.96
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.96
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.96
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.96
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.96
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.96
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.96
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.96
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.96
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.96
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.96
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.96
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.96
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.96
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.96
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.96
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.96
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.96
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.96
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.96
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.96
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.96
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.96
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.96
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.96
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.96
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.96
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.96
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.96
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.96
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.96
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.95
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.95
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.95
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.95
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.95
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.95
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.95
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.95
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.95
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.95
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.95
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.95
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.95
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.95
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.95
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.95
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.95
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.95
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.95
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.95
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.95
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.95
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.95
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.95
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.95
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.95
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.95
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.95
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.95
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.95
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.95
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.95
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.95
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.95
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.95
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.95
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.95
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.95
KOG1152	772	consensus Signal transduction serine/threonine kin	99.94
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.94
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.94
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.94
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.94
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.94
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.94
PHA02882	294	putative serine/threonine kinase; Provisional	99.94
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.94
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.93
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.92
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.92
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.91
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.91
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.91
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.91
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.91
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.9
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.9
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.89
PRK09188	365	serine/threonine protein kinase; Provisional	99.88
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.88
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.87
KOG3653	534	consensus Transforming growth factor beta/activin	99.87
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.86
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.86
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.85
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.84
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.83
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.82
PLN00181	793	protein SPA1-RELATED; Provisional	99.81
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.8
PRK10345	210	hypothetical protein; Provisional	99.8
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.8
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.78
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.77
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.77
PRK12274	218	serine/threonine protein kinase; Provisional	99.76
smart00090	237	RIO RIO-like kinase.	99.76
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.75
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.75
PRK14879	211	serine/threonine protein kinase; Provisional	99.74
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.73
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.72
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.72
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.71
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.67
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.66
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.64
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.64
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.61
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.58
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.52
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.5
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.48
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.38
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	99.38
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.38
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.38
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.35
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.17
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.1
KOG3087	229	consensus Serine/threonine protein kinase [General	98.99
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.99
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.98
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.97
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.95
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	98.89
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.82
KOG0606	1205	consensus Microtubule-associated serine/threonine	98.75
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	98.65
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.57
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.57
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.39
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.36
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.36
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.35
KOG1243	690	consensus Protein kinase [General function predict	98.26
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.18
KOG1235	538	consensus Predicted unusual protein kinase [Genera	98.12
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	98.11
PRK09902	216	hypothetical protein; Provisional	98.07
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	98.04
PF01636	239	APH: Phosphotransferase enzyme family This family	98.04
KOG2137	700	consensus Protein kinase [Signal transduction mech	97.83
KOG2464	246	consensus Serine/threonine kinase (haspin family)	97.79
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	97.74
KOG1266	458	consensus Protein kinase [Signal transduction mech	97.72
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	97.6
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	97.5
PLN02876	822	acyl-CoA dehydrogenase	97.49
PRK09550	401	mtnK methylthioribose kinase; Reviewed	97.49
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	97.41
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	97.22
KOG0576	829	consensus Mitogen-activated protein kinase kinase	97.16
PF12330	98	DUF3635: Domain of unknown function (DUF3635); Int	97.09
PRK05231	319	homoserine kinase; Provisional	97.08
PRK10593	297	hypothetical protein; Provisional	97.06
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	96.95
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	96.86
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	96.75
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	96.73
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	96.72
KOG1236	565	consensus Predicted unusual protein kinase [Genera	95.94
PRK12396	409	5-methylribose kinase; Reviewed	95.76
KOG2268	465	consensus Serine/threonine protein kinase [Signal	95.15
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	94.97
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	94.74
PLN02756	418	S-methyl-5-thioribose kinase	94.13
PHA03111	444	Ser/Thr kinase; Provisional	94.06
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	93.38
PF05445	434	Pox_ser-thr_kin: Poxvirus serine/threonine protein	93.29
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	93.09
COG4248	637	Uncharacterized protein with protein kinase and he	93.03
PTZ00384	383	choline kinase; Provisional	93.02
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	93.0
KOG2270	520	consensus Serine/threonine protein kinase involved	92.99
PRK10271	188	thiK thiamine kinase; Provisional	92.14
PLN02236	344	choline kinase	91.27
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	91.19
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	91.12
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	90.04
COG2334	331	Putative homoserine kinase type II (protein kinase	90.04
COG0510	269	ycfN Thiamine kinase and related kinases [Coenzyme	89.2
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	89.17

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.1e-44  Score=348.64  Aligned_cols=246  Identities=20%  Similarity=0.221  Sum_probs=196.6

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |.+.+.||+|+||.|.+|.+      ||||++.......... .......+.+|+.||++|+|        ||    ||+
T Consensus       174 yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~-~~~~~~~v~~EieILkkL~H--------P~----IV~  240 (475)
T KOG0615|consen  174 YIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSR-AIAKTRDVQNEIEILKKLSH--------PN----IVR  240 (475)
T ss_pred             eEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccc-cccchhhhHHHHHHHHhcCC--------CC----EEE
Confidence            48999999999999999973      9999998765421111 11223457899999999999        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      ++++|..                              .+..||||||+.|| +|.+.+-    +.++.-+.+++|++.||
T Consensus       241 ~~d~f~~------------------------------~ds~YmVlE~v~GG-eLfd~vv~nk~l~ed~~K~~f~Qll~av  289 (475)
T KOG0615|consen  241 IKDFFEV------------------------------PDSSYMVLEYVEGG-ELFDKVVANKYLREDLGKLLFKQLLTAV  289 (475)
T ss_pred             Eeeeeec------------------------------CCceEEEEEEecCc-cHHHHHHhccccccchhHHHHHHHHHHH
Confidence            9999654                              56689999999999 8887765    89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE----EEEecCCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI----FFLDLSQDPELFS  359 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~----i~~~~~~~pelf~  359 (447)
                      .|||+ .||+||||||||||+..+..                 .+.+||+|||+|+.......    ..+..|.|||+..
T Consensus       290 kYLH~-~GI~HRDiKPeNILl~~~~e-----------------~~llKItDFGlAK~~g~~sfm~TlCGTpsYvAPEVl~  351 (475)
T KOG0615|consen  290 KYLHS-QGIIHRDIKPENILLSNDAE-----------------DCLLKITDFGLAKVSGEGSFMKTLCGTPSYVAPEVLA  351 (475)
T ss_pred             HHHHH-cCcccccCCcceEEeccCCc-----------------ceEEEecccchhhccccceehhhhcCCccccChhhee
Confidence            99999 99999999999999998831                 24899999999999874321    2345588999985


Q ss_pred             CCC--CCc-hHHHHHhhccCCcccccCCCCCChhHHHH-HHHHHHhhccCCC--CCccchHHHHHHHHHhcccc-----C
Q 013230          360 GPK--GDK-QFDTYRKMKKVTEDQWEGSFPKTNVLWLV-YLVDMLLLKKTFD--RSSKDERDLRSLKKRLDKYN-----S  428 (447)
Q Consensus       360 g~~--~~~-~~di~s~lg~~~~~~~~~~~p~~~~~~~~-~~~~~l~~~~~~~--~~~~~s~~l~dLl~~mL~~d-----s  428 (447)
                      +..  ... .+|||+ +|++.+.+++|+.||....-.. ...+++.++-.|.  .+..+|.+++|||++||+.|     |
T Consensus       352 ~kg~~~~~~kVDiWS-lGcvLfvcLsG~pPFS~~~~~~sl~eQI~~G~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s  430 (475)
T KOG0615|consen  352 SKGVEYYPSKVDIWS-LGCVLFVCLSGYPPFSEEYTDPSLKEQILKGRYAFGPLQWDRISEEALDLINWMLVVDPENRPS  430 (475)
T ss_pred             cCCeecccchheeee-ccceEEEEeccCCCcccccCCccHHHHHhcCcccccChhhhhhhHHHHHHHHHhhEeCcccCcC
Confidence            533  223 459999 9999999999999998764444 3344443332332  35678999999999999999     9


Q ss_pred             HHHHHcCCCCCCCC
Q 013230          429 AKEAIFDPFFSDLI  442 (447)
Q Consensus       429 a~elL~HPff~~~~  442 (447)
                      ++|||+||||++..
T Consensus       431 ~~eaL~hpW~~~~~  444 (475)
T KOG0615|consen  431 ADEALNHPWFKDAP  444 (475)
T ss_pred             HHHHhcChhhhccc
Confidence            99999999999764

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=8.4e-44  Score=343.85  Aligned_cols=238  Identities=18%  Similarity=0.212  Sum_probs=205.6

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      .+.++.||+|+.|+||+|++      +|+|+|...       .......++.+|+++++..++        |+    ||+
T Consensus        81 le~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~-------~~~~~~~Qi~rEl~il~~~~s--------py----IV~  141 (364)
T KOG0581|consen   81 LERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLN-------IDPALQKQILRELEILRSCQS--------PY----IVG  141 (364)
T ss_pred             hhhhhhcccCCCcEEEEEEEcCCCeEEEEEeeccc-------CCHHHHHHHHHHHHHHhhCCC--------CC----eee
Confidence            37789999999999999985      899998543       344566889999999999987        77    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCC-ceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPEN-QRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      +|++|+.                              +. .++|+||||+|| +|+.+++    +++..+..++.||++|
T Consensus       142 ~ygaF~~------------------------------~~~~isI~mEYMDgG-SLd~~~k~~g~i~E~~L~~ia~~VL~G  190 (364)
T KOG0581|consen  142 FYGAFYS------------------------------NGEEISICMEYMDGG-SLDDILKRVGRIPEPVLGKIARAVLRG  190 (364)
T ss_pred             EeEEEEe------------------------------CCceEEeehhhcCCC-CHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence            9999876                              33 599999999999 9999988    9999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---CEEEEecCCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---DIFFLDLSQDPELFS  359 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---g~i~~~~~~~pelf~  359 (447)
                      |.|||..++||||||||+|||+...+                    .|||||||.|+.....   ..+.+..||+||-+.
T Consensus       191 L~YLh~~~~IIHRDIKPsNlLvNskG--------------------eVKicDFGVS~~lvnS~a~tfvGT~~YMsPERi~  250 (364)
T KOG0581|consen  191 LSYLHEERKIIHRDIKPSNLLVNSKG--------------------EVKICDFGVSGILVNSIANTFVGTSAYMSPERIS  250 (364)
T ss_pred             HHHHhhccCeeeccCCHHHeeeccCC--------------------CEEeccccccHHhhhhhcccccccccccChhhhc
Confidence            99999559999999999999999998                    8999999999887654   335667799999999


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChh-----HHHHHHHHHHhhc-cCCCCCccchHHHHHHHHHhcccc-----C
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV-----LWLVYLVDMLLLK-KTFDRSSKDERDLRSLKKRLDKYN-----S  428 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~-----~~~~~~~~~l~~~-~~~~~~~~~s~~l~dLl~~mL~~d-----s  428 (447)
                      |..+..+.|||+ +|....++..|.+|+.-.     .|...+..++.+. +.+|. ..+|+++++||..||++|     |
T Consensus       251 g~~Ys~~sDIWS-LGLsllE~a~GrfP~~~~~~~~~~~~~Ll~~Iv~~ppP~lP~-~~fS~ef~~FV~~CL~Kdp~~R~s  328 (364)
T KOG0581|consen  251 GESYSVKSDIWS-LGLSLLELAIGRFPYPPPNPPYLDIFELLCAIVDEPPPRLPE-GEFSPEFRSFVSCCLRKDPSERPS  328 (364)
T ss_pred             CCcCCcccceec-ccHHHHHHhhCCCCCCCcCCCCCCHHHHHHHHhcCCCCCCCc-ccCCHHHHHHHHHHhcCCcccCCC
Confidence            999999999999 999999999998887653     6777777777422 22332 259999999999999999     9


Q ss_pred             HHHHHcCCCCCCCCC
Q 013230          429 AKEAIFDPFFSDLIV  443 (447)
Q Consensus       429 a~elL~HPff~~~~~  443 (447)
                      ++|+|+|||+++...
T Consensus       329 ~~qLl~Hpfi~~~~~  343 (364)
T KOG0581|consen  329 AKQLLQHPFIKKFED  343 (364)
T ss_pred             HHHHhcCHHHhhccc
Confidence            999999999987654

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=9.6e-44  Score=337.97  Aligned_cols=239  Identities=25%  Similarity=0.360  Sum_probs=206.6

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+.+.+|++|+||.||+|++      ||+|.++.+.      +.....-..+|||.+|.+++|        ||    ||.
T Consensus        78 fe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmek------ek~GFPItsLREIniLl~~~H--------~N----IV~  139 (419)
T KOG0663|consen   78 FEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEK------EKEGFPITSLREINILLKARH--------PN----IVE  139 (419)
T ss_pred             HHHHhhcccCcceeEEEeccCCcceeEEeeeccccc------ccCCCcchhHHHHHHHHhcCC--------CC----eee
Confidence            49999999999999999995      9999998764      344455667999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +.++.+.                            .+-+.+|||||||+  .||..++.     |...+++.++.|++.|
T Consensus       140 vkEVVvG----------------------------~~~d~iy~VMe~~E--hDLksl~d~m~q~F~~~evK~L~~QlL~g  189 (419)
T KOG0663|consen  140 VKEVVVG----------------------------SNMDKIYIVMEYVE--HDLKSLMETMKQPFLPGEVKTLMLQLLRG  189 (419)
T ss_pred             eEEEEec----------------------------cccceeeeeHHHHH--hhHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence            9998543                            12356999999999  79999987     8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------------------
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------------------  344 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------------------  344 (447)
                      |+|||. +.|+||||||+|+|+...|                    .+||+|||+||.+..+                  
T Consensus       190 lk~lH~-~wilHRDLK~SNLLm~~~G--------------------~lKiaDFGLAR~ygsp~k~~T~lVVTLWYRaPEL  248 (419)
T KOG0663|consen  190 LKHLHD-NWILHRDLKTSNLLLSHKG--------------------ILKIADFGLAREYGSPLKPYTPLVVTLWYRAPEL  248 (419)
T ss_pred             HHHHhh-ceeEecccchhheeeccCC--------------------cEEecccchhhhhcCCcccCcceEEEeeecCHHH
Confidence            999999 9999999999999999998                    7999999999987765                  


Q ss_pred             ----------------CEEEEecCCCCCCCCCCCCCchH-HHHHhhccCCcccccCC--CCCCh-hHHHHHHHHHHhhcc
Q 013230          345 ----------------DIFFLDLSQDPELFSGPKGDKQF-DTYRKMKKVTEDQWEGS--FPKTN-VLWLVYLVDMLLLKK  404 (447)
Q Consensus       345 ----------------g~i~~~~~~~pelf~g~~~~~~~-di~s~lg~~~~~~~~~~--~p~~~-~~~~~~~~~~l~~~~  404 (447)
                                      |||++|++++.++|+|..+.+|+ .||..+|+++...|+|+  +|..+ ..+..+....+  ++
T Consensus       249 LLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~~If~llGtPte~iwpg~~~lp~~k~~~f~~~pyn~l--r~  326 (419)
T KOG0663|consen  249 LLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLDKIFKLLGTPSEAIWPGYSELPAVKKMTFSEHPYNNL--RK  326 (419)
T ss_pred             hcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCccccCCCccccchhhccccCCCCchhh--hh
Confidence                            99999999999999999999999 79999999999999998  55553 34444444555  34


Q ss_pred             CCCCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          405 TFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       405 ~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                      .|+... ++....||+.+||.+|     ||.|+|+|+||.+.+.+
T Consensus       327 kF~~~~-lse~g~~Lln~llt~dP~kR~tA~~~L~h~~F~e~P~p  370 (419)
T KOG0663|consen  327 KFGALS-LSEQGFDLLNKLLTYDPGKRITAEDGLKHEYFRETPLP  370 (419)
T ss_pred             hccccc-cchhHHHHHHHHhccCccccccHHHhhcccccccCCCC
Confidence            565533 7899999999999999     99999999999987554

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=6e-43  Score=337.81  Aligned_cols=242  Identities=21%  Similarity=0.232  Sum_probs=208.0

Q ss_pred             CCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccce
Q 013230          132 SDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~i  205 (447)
                      .+|++++.||+|+||+||+++.      +|+|+++++..+     ..+..+....|..||.+++|        |+    |
T Consensus        25 ~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv-----~~~e~~~~~~Er~IL~~v~h--------PF----i   87 (357)
T KOG0598|consen   25 DDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIV-----EKKEVRHTKAERNILSKIKH--------PF----I   87 (357)
T ss_pred             hheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhh-----hhhhHHHHHHHHHHHHhCCC--------Cc----E
Confidence            3569999999999999999984      999999877652     22345788999999999998        88    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTA  281 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~  281 (447)
                      |.++..                              +++...+|+|+||+.|| +|...+.    |+++.++.++.+|+.
T Consensus        88 v~l~ys------------------------------FQt~~kLylVld~~~GG-eLf~hL~~eg~F~E~~arfYlaEi~l  136 (357)
T KOG0598|consen   88 VKLIYS------------------------------FQTEEKLYLVLDYLNGG-ELFYHLQREGRFSEDRARFYLAEIVL  136 (357)
T ss_pred             eeeEEe------------------------------cccCCeEEEEEeccCCc-cHHHHHHhcCCcchhHHHHHHHHHHH
Confidence            999887                              45578899999999999 8888776    999999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pe  356 (447)
                      ||.|||+ .||||||||||||||+.+|                    +++|+|||||+.....|     .+.+.-|||||
T Consensus       137 AL~~LH~-~gIiyRDlKPENILLd~~G--------------------Hi~LtDFgL~k~~~~~~~~t~tfcGT~eYmAPE  195 (357)
T KOG0598|consen  137 ALGYLHS-KGIIYRDLKPENILLDEQG--------------------HIKLTDFGLCKEDLKDGDATRTFCGTPEYMAPE  195 (357)
T ss_pred             HHHHHHh-CCeeeccCCHHHeeecCCC--------------------cEEEeccccchhcccCCCccccccCCccccChH
Confidence            9999999 9999999999999999999                    99999999999654442     23445599999


Q ss_pred             CCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc---------
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN---------  427 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d---------  427 (447)
                      ++.+..++..+|.|+ ||++.++|..|..||+..........++..+ ....+..++.+++|||++||+.|         
T Consensus       196 il~~~gy~~~vDWWs-LGillYeML~G~pPF~~~~~~~~~~~I~~~k-~~~~p~~ls~~ardll~~LL~rdp~~RLg~~~  273 (357)
T KOG0598|consen  196 ILLGKGYDKAVDWWS-LGILLYEMLTGKPPFYAEDVKKMYDKILKGK-LPLPPGYLSEEARDLLKKLLKRDPRQRLGGPG  273 (357)
T ss_pred             HHhcCCCCcccchHh-HHHHHHHHhhCCCCCcCccHHHHHHHHhcCc-CCCCCccCCHHHHHHHHHHhccCHHHhcCCCC
Confidence            999988888889999 9999999999999999887777666666433 22233558999999999999999         


Q ss_pred             CHHHHHcCCCCCCCCCC
Q 013230          428 SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       428 sa~elL~HPff~~~~~~  444 (447)
                      ++.++-+||||.++.++
T Consensus       274 d~~~ik~HpfF~~inW~  290 (357)
T KOG0598|consen  274 DAEEIKRHPFFKGINWE  290 (357)
T ss_pred             ChHHhhcCcccccCCHH
Confidence            78999999999998754

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=5.1e-43  Score=324.23  Aligned_cols=235  Identities=26%  Similarity=0.405  Sum_probs=198.9

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |..+++||+|+||.||+|++      ||||+|+...      ..+.....++|||.+|+.++|        +|    ||.
T Consensus         4 Y~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~------~kdGi~~talREIK~Lqel~h--------~n----Ii~   65 (318)
T KOG0659|consen    4 YEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGN------AKDGINRTALREIKLLQELKH--------PN----IIE   65 (318)
T ss_pred             hhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccc------cccCccHHHHHHHHHHHHccC--------cc----hhh
Confidence            48899999999999999985      9999998763      233345678999999999999        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +.|+|..                              .+.+.||+||++  .||+..++     ++..+++.++.|++.|
T Consensus        66 LiD~F~~------------------------------~~~l~lVfEfm~--tdLe~vIkd~~i~l~pa~iK~y~~m~LkG  113 (318)
T KOG0659|consen   66 LIDVFPH------------------------------KSNLSLVFEFMP--TDLEVVIKDKNIILSPADIKSYMLMTLKG  113 (318)
T ss_pred             hhhhccC------------------------------CCceEEEEEecc--ccHHHHhcccccccCHHHHHHHHHHHHHH
Confidence            9999643                              677999999999  79999998     9999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------------------
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------------------  344 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------------------  344 (447)
                      |+|||+ +.|+||||||.|+|++.++                    .+||+|||+||.....                  
T Consensus       114 l~y~H~-~~IlHRDlKPnNLLis~~g--------------------~lKiADFGLAr~f~~p~~~~~~~V~TRWYRAPEL  172 (318)
T KOG0659|consen  114 LAYCHS-KWILHRDLKPNNLLISSDG--------------------QLKIADFGLARFFGSPNRIQTHQVVTRWYRAPEL  172 (318)
T ss_pred             HHHHHh-hhhhcccCCccceEEcCCC--------------------cEEeecccchhccCCCCcccccceeeeeccChHH
Confidence            999999 9999999999999999998                    7999999999987643                  


Q ss_pred             ----------------CEEEEecCCCCCCCCCCCCCchH-HHHHhhccCCcccccCC--CCCChhHHHHHHHHHHhhccC
Q 013230          345 ----------------DIFFLDLSQDPELFSGPKGDKQF-DTYRKMKKVTEDQWEGS--FPKTNVLWLVYLVDMLLLKKT  405 (447)
Q Consensus       345 ----------------g~i~~~~~~~pelf~g~~~~~~~-di~s~lg~~~~~~~~~~--~p~~~~~~~~~~~~~l~~~~~  405 (447)
                                      |||++|++.+.++|+|....+|+ .||+.+|++..+.|+..  +|.++... .+....+  ...
T Consensus       173 LfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~~If~~LGTP~~~~WP~~~~lpdY~~~~-~~P~~~~--~~l  249 (318)
T KOG0659|consen  173 LFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLSKIFRALGTPTPDQWPEMTSLPDYVKIQ-QFPKPPL--NNL  249 (318)
T ss_pred             hccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHHHHHHHcCCCCcccCccccccccHHHHh-cCCCCcc--ccc
Confidence                            89999999999999999999999 89999999999999987  44433211 0000000  012


Q ss_pred             CCCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCCC
Q 013230          406 FDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVDR  445 (447)
Q Consensus       406 ~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~~  445 (447)
                      |   ...+.++.||+.+||.+|     ||.|+|+||||+..+.+.
T Consensus       250 f---~aas~d~ldLl~~m~~ynP~~Rita~qaL~~~yf~~~P~pt  291 (318)
T KOG0659|consen  250 F---PAASSDALDLLSKMLTYNPKKRITASQALKHPYFKSLPLPT  291 (318)
T ss_pred             c---ccccHHHHHHHHhhhccCchhcccHHHHhcchhhhcCCCCC
Confidence            2   346888999999999999     999999999999876543

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-42  Score=324.73  Aligned_cols=241  Identities=21%  Similarity=0.256  Sum_probs=212.8

Q ss_pred             CCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccce
Q 013230          132 SDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~i  205 (447)
                      .+|+.++.||.|+||.|.+++.      +|+|++.+...     ...+..++..+|.++|+.+.|        |+    +
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~v-----VklKQveH~~nEk~vL~~v~~--------PF----l  106 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKV-----VKLKQVEHTHNEKRVLKAVSH--------PF----L  106 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHH-----HHHHHHHHHhhHHHHHhhccC--------ce----e
Confidence            3559999999999999999984      99999987755     455567889999999999998        77    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTA  281 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~  281 (447)
                      +++++.|.+                              .+.+|+||||..|| .|..+++    |++..+++++.||+.
T Consensus       107 v~l~~t~~d------------------------------~~~lymvmeyv~GG-ElFS~Lrk~~rF~e~~arFYAAeivl  155 (355)
T KOG0616|consen  107 VKLYGTFKD------------------------------NSNLYMVMEYVPGG-ELFSYLRKSGRFSEPHARFYAAEIVL  155 (355)
T ss_pred             EEEEEeecc------------------------------CCeEEEEEeccCCc-cHHHHHHhcCCCCchhHHHHHHHHHH
Confidence            999988543                              67899999999999 8888887    999999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEEEEec--CCCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDL--SQDPELFS  359 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i~~~~--~~~pelf~  359 (447)
                      ||+|||+ ++|++||||||||||+++|                    .+||+|||+|+...+..+.++..  |.+||+..
T Consensus       156 AleylH~-~~iiYRDLKPENiLlD~~G--------------------~iKitDFGFAK~v~~rT~TlCGTPeYLAPEii~  214 (355)
T KOG0616|consen  156 ALEYLHS-LDIIYRDLKPENLLLDQNG--------------------HIKITDFGFAKRVSGRTWTLCGTPEYLAPEIIQ  214 (355)
T ss_pred             HHHHHHh-cCeeeccCChHHeeeccCC--------------------cEEEEeccceEEecCcEEEecCCccccChHHhh
Confidence            9999999 9999999999999999999                    89999999999988875555443  89999999


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----------CH
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----------SA  429 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----------sa  429 (447)
                      ...+...+|.|+ +|+..++|..|..||+.........+++..+-.||  ...+++++|||++||+.|          ..
T Consensus       215 sk~ynkavDWWa-lGVLIYEMlaG~pPF~~~~~~~iY~KI~~~~v~fP--~~fs~~~kdLl~~LL~vD~t~R~gnlknG~  291 (355)
T KOG0616|consen  215 SKGYNKAVDWWA-LGVLIYEMLAGYPPFYDDNPIQIYEKILEGKVKFP--SYFSSDAKDLLKKLLQVDLTKRFGNLKNGV  291 (355)
T ss_pred             cCCCCcchhHHH-HHHHHHHHHcCCCCCcCCChHHHHHHHHhCcccCC--cccCHHHHHHHHHHHhhhhHhhhcCcCCCc
Confidence            988888889999 99999999999999998777777778885555555  679999999999999999          67


Q ss_pred             HHHHcCCCCCCCCCC
Q 013230          430 KEAIFDPFFSDLIVD  444 (447)
Q Consensus       430 ~elL~HPff~~~~~~  444 (447)
                      .++..||||+++.++
T Consensus       292 ~dIk~H~wF~~v~W~  306 (355)
T KOG0616|consen  292 EDIKNHPWFKGVDWE  306 (355)
T ss_pred             cccccCcccccccHH
Confidence            899999999987653

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.7e-42  Score=343.22  Aligned_cols=229  Identities=24%  Similarity=0.369  Sum_probs=196.2

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+.+++||+|+||.||+|++      ||+|.|+.+.      +.........|||.||++|+|        ||    ||+
T Consensus       119 feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~------~~~~~~~t~~REI~ILr~l~H--------pN----Iik  180 (560)
T KOG0600|consen  119 FEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDN------EKEGFPITAIREIKILRRLDH--------PN----IIK  180 (560)
T ss_pred             HHHHHHhcCcchhheeEeeecccCcEEEEEEeeccc------CCCcchHHHHHHHHHHHhcCC--------Cc----ccc
Confidence            59999999999999999995      9999999764      355667788999999999999        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      |.++.+..                            ....+|+|+|||+  .||.-++.     |++.+++.|++||+.|
T Consensus       181 L~eivt~~----------------------------~~~siYlVFeYMd--hDL~GLl~~p~vkft~~qIKc~mkQLl~G  230 (560)
T KOG0600|consen  181 LEEIVTSK----------------------------LSGSIYLVFEYMD--HDLSGLLSSPGVKFTEPQIKCYMKQLLEG  230 (560)
T ss_pred             eeeEEEec----------------------------CCceEEEEEeccc--chhhhhhcCCCcccChHHHHHHHHHHHHH
Confidence            99996542                            1357999999999  68988876     9999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------------------
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------------------  344 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------------------  344 (447)
                      |.|||+ +||+|||||..||||+.++                    .+||+|||||+.+...                  
T Consensus       231 l~~cH~-~gvlHRDIK~SNiLidn~G--------------------~LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRpPE  289 (560)
T KOG0600|consen  231 LEYCHS-RGVLHRDIKGSNILIDNNG--------------------VLKIADFGLARFYTPSGSAPYTSRVVTLWYRPPE  289 (560)
T ss_pred             HHHHhh-cCeeeccccccceEEcCCC--------------------CEEeccccceeeccCCCCcccccceEEeeccChH
Confidence            999999 9999999999999999998                    7999999999965543                  


Q ss_pred             -----------------CEEEEecCCCCCCCCCCCCCchH-HHHHhhccCCcccccCC-CCCChhHH-----HHHHHHHH
Q 013230          345 -----------------DIFFLDLSQDPELFSGPKGDKQF-DTYRKMKKVTEDQWEGS-FPKTNVLW-----LVYLVDML  400 (447)
Q Consensus       345 -----------------g~i~~~~~~~pelf~g~~~~~~~-di~s~lg~~~~~~~~~~-~p~~~~~~-----~~~~~~~l  400 (447)
                                       |||+.|+|.|.++|+|..+..|+ .||.++|.++.+.|+.. +|.....-     .+.+.+. 
T Consensus       290 LLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~W~~~kLP~~~~~kp~~~y~r~l~E~-  368 (560)
T KOG0600|consen  290 LLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDYWPVSKLPHATIFKPQQPYKRRLRET-  368 (560)
T ss_pred             HhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhccccccCCcccccCCCCcccchHHHH-
Confidence                             99999999999999999999999 89999999999999833 55433211     1112221 


Q ss_pred             hhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCC
Q 013230          401 LLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSD  440 (447)
Q Consensus       401 ~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~  440 (447)
                              ...++..+.+|+..||.+|     ||.++|+|+||+.
T Consensus       369 --------~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~seyF~t  405 (560)
T KOG0600|consen  369 --------FKDFPASALDLLEKLLSLDPDKRGTASSALQSEYFTT  405 (560)
T ss_pred             --------hccCCHHHHHHHHHHhccCccccccHHHHhcCccccc
Confidence                    1346889999999999999     9999999999953

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=3.9e-42  Score=344.56  Aligned_cols=246  Identities=19%  Similarity=0.200  Sum_probs=209.6

Q ss_pred             hhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCc
Q 013230          128 FSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA  201 (447)
Q Consensus       128 ~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~  201 (447)
                      ...-.||...+.||+|+|++|++|++      +|||++.++..     ..++...-+.+|-.+|.+|.+           
T Consensus        69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~I-----ike~KvkYV~~Ek~~l~~L~~-----------  132 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYI-----IKEKKVKYVTREKEALTQLSG-----------  132 (604)
T ss_pred             cCChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHH-----HhhcccchhhHHHHHHHHhhC-----------
Confidence            33445789999999999999999984      99999887654     344455678899999999964           


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHH
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLV  277 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~  277 (447)
                      ||+||+|+-.|                              .++..+|+|+||+.+| +|.++|.    |++..+|.++.
T Consensus       133 hPgivkLy~TF------------------------------QD~~sLYFvLe~A~nG-dll~~i~K~Gsfde~caR~YAA  181 (604)
T KOG0592|consen  133 HPGIVKLYFTF------------------------------QDEESLYFVLEYAPNG-DLLDLIKKYGSFDETCARFYAA  181 (604)
T ss_pred             CCCeEEEEEEe------------------------------ecccceEEEEEecCCC-cHHHHHHHhCcchHHHHHHHHH
Confidence            57799999884                              3477899999999999 9999988    99999999999


Q ss_pred             HHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-------------
Q 013230          278 QVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-------------  344 (447)
Q Consensus       278 Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-------------  344 (447)
                      ||+.||+|||+ +||||||||||||||+.++                    ++||+|||.|+...+.             
T Consensus       182 eIldAleylH~-~GIIHRDlKPENILLd~dm--------------------hikITDFGsAK~l~~~~~~~~~~~~~~~a  240 (604)
T KOG0592|consen  182 EILDALEYLHS-NGIIHRDLKPENILLDKDG--------------------HIKITDFGSAKILSPSQKSQENPVDPNQA  240 (604)
T ss_pred             HHHHHHHHHHh-cCceeccCChhheeEcCCC--------------------cEEEeeccccccCChhhccccCccCcccc
Confidence            99999999999 9999999999999999998                    8999999999886533             


Q ss_pred             -----CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHH
Q 013230          345 -----DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSL  419 (447)
Q Consensus       345 -----g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dL  419 (447)
                           ..+....|..||+......+...|||+ +|++.+.|..|..||....-...+.+++  .-.+..+...++.++||
T Consensus       241 ~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWA-lGCilyQmlaG~PPFra~NeyliFqkI~--~l~y~fp~~fp~~a~dL  317 (604)
T KOG0592|consen  241 SSRRSSFVGTAEYVSPELLNDSPAGPSSDLWA-LGCILYQMLAGQPPFRAANEYLIFQKIQ--ALDYEFPEGFPEDARDL  317 (604)
T ss_pred             cCcccceeeeecccCHHHhcCCCCCcccchHH-HHHHHHHHhcCCCCCccccHHHHHHHHH--HhcccCCCCCCHHHHHH
Confidence                 246667799999999988888889999 9999999999999997764433444554  44566667889999999


Q ss_pred             HHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          420 KKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       420 l~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                      |+++|+.|     |++|+.+||||.++..+
T Consensus       318 v~KLLv~dp~~Rlt~~qIk~HpFF~~Vdw~  347 (604)
T KOG0592|consen  318 IKKLLVRDPSDRLTSQQIKAHPFFEGVDWE  347 (604)
T ss_pred             HHHHHccCccccccHHHHhhCcccccCChh
Confidence            99999999     99999999999987653

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=7.3e-42  Score=342.76  Aligned_cols=243  Identities=19%  Similarity=0.219  Sum_probs=206.5

Q ss_pred             cCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          131 YSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       131 y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      ..+|++++.||+|+||.||+|+.      +|+|++++...     ......+++..|-.||...+.        +.    
T Consensus       140 ~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M-----~~~~Qv~hV~aERdiL~~~ds--------~~----  202 (550)
T KOG0605|consen  140 LDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEM-----LKKNQVEHVRAERDILAEVDS--------PW----  202 (550)
T ss_pred             cccchhheeeccccceeEEEEEEccCCcEEeeecccHHHH-----HhhhhHHHHHHHHHHhhhcCC--------Cc----
Confidence            45689999999999999999983      99999987654     333456788999999999776        77    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVT  280 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil  280 (447)
                      ||+||-.|                              .+.+.+|+||||++|| |+..++.    |+++.+++++.+++
T Consensus       203 vVKLyYsF------------------------------QD~~~LYLiMEylPGG-D~mTLL~~~~~L~e~~arfYiaE~v  251 (550)
T KOG0605|consen  203 VVKLYYSF------------------------------QDKEYLYLIMEYLPGG-DMMTLLMRKDTLTEDWARFYIAETV  251 (550)
T ss_pred             EEEEEEEe------------------------------cCCCeeEEEEEecCCc-cHHHHHHhcCcCchHHHHHHHHHHH
Confidence            99999884                              4578899999999999 9999876    99999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----------------
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----------------  344 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----------------  344 (447)
                      .|+.-||+ .|+|||||||+|+||+..|                    ++||+|||||.-....                
T Consensus       252 lAI~~iH~-~gyIHRDIKPdNlLiD~~G--------------------HiKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~  310 (550)
T KOG0605|consen  252 LAIESIHQ-LGYIHRDIKPDNLLIDAKG--------------------HIKLSDFGLSTGLDKKHRIESYRLDEQMQINL  310 (550)
T ss_pred             HHHHHHHH-cCcccccCChhheeecCCC--------------------CEeeccccccchhhhhhhhhhhcchhhhhhhh
Confidence            99999999 9999999999999999999                    9999999999532110                


Q ss_pred             ------------------------------------CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCC
Q 013230          345 ------------------------------------DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKT  388 (447)
Q Consensus       345 ------------------------------------g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~  388 (447)
                                                          ..+...=|+|||+|.|..++..+|+|+ ||++.++++.|+.||.
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWS-LG~ImyEmLvGyPPF~  389 (550)
T KOG0605|consen  311 SEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWS-LGCIMYEMLVGYPPFC  389 (550)
T ss_pred             ccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHH-HHHHHHHHHhCCCCCC
Confidence                                                234445599999999988888889999 9999999999999998


Q ss_pred             hhHHHHHHHHHHhhc--cCCCCCccchHHHHHHHHHhcccc--------CHHHHHcCCCCCCCCCC
Q 013230          389 NVLWLVYLVDMLLLK--KTFDRSSKDERDLRSLKKRLDKYN--------SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       389 ~~~~~~~~~~~l~~~--~~~~~~~~~s~~l~dLl~~mL~~d--------sa~elL~HPff~~~~~~  444 (447)
                      .........+++.-+  -.+|.....+++++|||.+||. |        +++|+.+||||+++.++
T Consensus       390 s~tp~~T~rkI~nwr~~l~fP~~~~~s~eA~DLI~rll~-d~~~RLG~~G~~EIK~HPfF~~v~W~  454 (550)
T KOG0605|consen  390 SETPQETYRKIVNWRETLKFPEEVDLSDEAKDLITRLLC-DPENRLGSKGAEEIKKHPFFKGVDWD  454 (550)
T ss_pred             CCCHHHHHHHHHHHhhhccCCCcCcccHHHHHHHHHHhc-CHHHhcCcccHHHHhcCCccccCCcc
Confidence            766555555555434  3556666789999999999999 7        89999999999998765

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-41  Score=331.10  Aligned_cols=246  Identities=22%  Similarity=0.251  Sum_probs=203.9

Q ss_pred             CCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccce
Q 013230          132 SDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~i  205 (447)
                      .+|...++||+|+||+||+|++      ||||.|..++      ...+..+-+..|+.||+.|+|        ||    |
T Consensus        10 ~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~------l~~k~~e~L~~Ei~iLkel~H--------~n----I   71 (429)
T KOG0595|consen   10 GDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKK------LNKKLVELLLSEIKILKELKH--------PN----I   71 (429)
T ss_pred             ccceehhhccCcceEEEEEeEeccCCceEEeeeehhhc------cCHHHHHHHHHHHHHHHhcCC--------cc----e
Confidence            4569999999999999999984      9999998664      244566788999999999999        88    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTA  281 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~  281 (447)
                      |+++|+.                              ..++.+|+|||||+|| ||..++.    +++..++.++.||+.
T Consensus        72 V~l~d~~------------------------------~~~~~i~lVMEyC~gG-DLs~yi~~~~~l~e~t~r~Fm~QLA~  120 (429)
T KOG0595|consen   72 VRLLDCI------------------------------EDDDFIYLVMEYCNGG-DLSDYIRRRGRLPEATARHFMQQLAS  120 (429)
T ss_pred             eeEEEEE------------------------------ecCCeEEEEEEeCCCC-CHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            9999993                              3467899999999999 9999998    999999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE----EEEecCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI----FFLDLSQDPEL  357 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~----i~~~~~~~pel  357 (447)
                      ||++||+ ++||||||||+||||+......              ....+||+|||+||.....+.    ....+|||||+
T Consensus       121 alq~L~~-~~IiHRDLKPQNiLLs~~~~~~--------------~~~~LKIADFGfAR~L~~~~~a~tlcGSplYMAPEV  185 (429)
T KOG0595|consen  121 ALQFLHE-NNIIHRDLKPQNILLSTTARND--------------TSPVLKIADFGFARFLQPGSMAETLCGSPLYMAPEV  185 (429)
T ss_pred             HHHHHHH-CCeeeccCCcceEEeccCCCCC--------------CCceEEecccchhhhCCchhHHHHhhCCccccCHHH
Confidence            9999999 9999999999999999873100              003799999999999886521    24577999999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC-CccchHHHHHHHHHhcccc-----CHHH
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR-SSKDERDLRSLKKRLDKYN-----SAKE  431 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~-~~~~s~~l~dLl~~mL~~d-----sa~e  431 (447)
                      +....++.+.|+|+ +|++.+++..|..||......+.+..+-......+. +...+...++|+..+|+.+     +..+
T Consensus       186 ~~~~~YdAKADLWS-iG~Ilyq~l~g~~Pf~a~t~~eL~~~~~k~~~~~~~~~~~~s~~~~~Ll~~ll~~~~~~~~~~~~  264 (429)
T KOG0595|consen  186 IMSQQYDAKADLWS-IGTILYQCLTGKPPFDAETPKELLLYIKKGNEIVPVLPAELSNPLRELLISLLQRNPKDRISFED  264 (429)
T ss_pred             HHhccccchhhHHH-HHHHHHHHHhCCCCccccCHHHHHHHHhccccccCchhhhccCchhhhhhHHHhcCccccCchHH
Confidence            98888999999999 999999999999999866555555444333333333 4557888899999999997     8888


Q ss_pred             HHcCCCCCCCC
Q 013230          432 AIFDPFFSDLI  442 (447)
Q Consensus       432 lL~HPff~~~~  442 (447)
                      .+.||+...-.
T Consensus       265 ~~~~~~l~~~p  275 (429)
T KOG0595|consen  265 FFDHPFLAANP  275 (429)
T ss_pred             hhhhhhcccCc
Confidence            88999887543

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.9e-40  Score=337.22  Aligned_cols=237  Identities=26%  Similarity=0.314  Sum_probs=207.4

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|+..+.||+|+|+.||.+++      ||+|+|+++..     ......+.+.+||+|.+.|+|        ||    ||
T Consensus        19 ~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l-----~k~~~reKv~~EIeIHr~L~H--------pn----IV   81 (592)
T KOG0575|consen   19 RYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLL-----KKPKQREKVLNEIEIHRSLKH--------PN----IV   81 (592)
T ss_pred             eeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHh-----cCcchHHHHHHHHHHHHhcCC--------Cc----EE
Confidence            359999999999999999985      99999997654     344566889999999999999        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      +++++|.                              +.+.+|||+|+|..| +|..+++    ++|.+++.|++||+.|
T Consensus        82 ~f~~~FE------------------------------Ds~nVYivLELC~~~-sL~el~Krrk~ltEpEary~l~QIv~G  130 (592)
T KOG0575|consen   82 QFYHFFE------------------------------DSNNVYIVLELCHRG-SLMELLKRRKPLTEPEARYFLRQIVEG  130 (592)
T ss_pred             eeeeEee------------------------------cCCceEEEEEecCCc-cHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence            9999953                              478899999999998 9999887    9999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pel  357 (447)
                      |.|||+ ++|||||||.+||+|+.+-                    +|||+|||||.....++     ...+.-|.+||+
T Consensus       131 lkYLH~-~~IiHRDLKLGNlfL~~~~--------------------~VKIgDFGLAt~le~~~Erk~TlCGTPNYIAPEV  189 (592)
T KOG0575|consen  131 LKYLHS-LGIIHRDLKLGNLFLNENM--------------------NVKIGDFGLATQLEYDGERKKTLCGTPNYIAPEV  189 (592)
T ss_pred             HHHHHh-cCceecccchhheeecCcC--------------------cEEecccceeeeecCcccccceecCCCcccChhH
Confidence            999999 9999999999999999996                    89999999999887552     123455999999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHH
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEA  432 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~el  432 (447)
                      .........+|||+ +|++.|.++.|..||........+..+...  .+..|..+|.+++|||.+||..|     |++++
T Consensus       190 l~k~gHsfEvDiWS-lGcvmYtLL~G~PPFetk~vkety~~Ik~~--~Y~~P~~ls~~A~dLI~~lL~~~P~~Rpsl~~v  266 (592)
T KOG0575|consen  190 LNKSGHSFEVDIWS-LGCVMYTLLVGRPPFETKTVKETYNKIKLN--EYSMPSHLSAEAKDLIRKLLRPNPSERPSLDEV  266 (592)
T ss_pred             hccCCCCCchhhhh-hhhHHHhhhhCCCCcccchHHHHHHHHHhc--CcccccccCHHHHHHHHHHhcCCcccCCCHHHH
Confidence            98877888889999 999999999999999887777766666643  44555689999999999999999     99999


Q ss_pred             HcCCCCCCC
Q 013230          433 IFDPFFSDL  441 (447)
Q Consensus       433 L~HPff~~~  441 (447)
                      |.|+||+.=
T Consensus       267 L~h~Ff~~g  275 (592)
T KOG0575|consen  267 LDHPFFKSG  275 (592)
T ss_pred             hcCHhhhCC
Confidence            999999543

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-42  Score=339.44  Aligned_cols=231  Identities=26%  Similarity=0.379  Sum_probs=189.6

Q ss_pred             hhhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhcc-ccccCCCCC
Q 013230          126 DLFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN-HLRRNEGDT  198 (447)
Q Consensus       126 ~~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~  198 (447)
                      .+..||   .++++||.|+||.||+|+.      ||||.++.+..       .-..-.-+||+.-|++|+ |        
T Consensus         7 ~~m~RY---~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~-------s~ee~~nLREvksL~kln~h--------   68 (538)
T KOG0661|consen    7 IFMDRY---TVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFY-------SWEECMNLREVKSLRKLNPH--------   68 (538)
T ss_pred             hHHHHH---HHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhc-------cHHHHHHHHHHHHHHhcCCC--------
Confidence            345566   9999999999999999983      99998875532       111123489999999998 6        


Q ss_pred             CCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHH
Q 013230          199 LNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEAR  273 (447)
Q Consensus       199 ~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~  273 (447)
                      ||    ||++++++..                             .+..+|+|||||+  ++|+++++     |++..++
T Consensus        69 pn----iikL~Evi~d-----------------------------~~~~L~fVfE~Md--~NLYqLmK~R~r~fse~~ir  113 (538)
T KOG0661|consen   69 PN----IIKLKEVIRD-----------------------------NDRILYFVFEFMD--CNLYQLMKDRNRLFSESDIR  113 (538)
T ss_pred             Cc----chhhHHHhhc-----------------------------cCceEeeeHHhhh--hhHHHHHhhcCCcCCHHHHH
Confidence            77    9999999532                             1237999999999  89999998     9999999


Q ss_pred             HHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---------
Q 013230          274 SLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---------  344 (447)
Q Consensus       274 ~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---------  344 (447)
                      .|+.||+.||+|+|. +|+.|||+||||||+..+.                    .|||+|||+||.....         
T Consensus       114 nim~QilqGL~hiHk-~GfFHRDlKPENiLi~~~~--------------------~iKiaDFGLARev~SkpPYTeYVST  172 (538)
T KOG0661|consen  114 NIMYQILQGLAHIHK-HGFFHRDLKPENILISGND--------------------VIKIADFGLAREVRSKPPYTEYVST  172 (538)
T ss_pred             HHHHHHHHHHHHHHh-cCcccccCChhheEecccc--------------------eeEecccccccccccCCCcchhhhc
Confidence            999999999999999 9999999999999999765                    7999999999986543         


Q ss_pred             ------------------------CEEEEecCCCCCCCCCCCCCchH-HHHHhhccCCcccccCCCCCChhHHHHHHHHH
Q 013230          345 ------------------------DIFFLDLSQDPELFSGPKGDKQF-DTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDM  399 (447)
Q Consensus       345 ------------------------g~i~~~~~~~pelf~g~~~~~~~-di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~  399 (447)
                                              |||++|+|+-.++|+|..+.+|. .|-..+|++..+.|....-         +...
T Consensus       173 RWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~---------La~~  243 (538)
T KOG0661|consen  173 RWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDSWPEGYN---------LASA  243 (538)
T ss_pred             ccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCccccchhHHH---------HHHH
Confidence                                    99999999999999999999998 8999999999888865311         1111


Q ss_pred             HhhccCCCC---------CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCC
Q 013230          400 LLLKKTFDR---------SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       400 l~~~~~~~~---------~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~  441 (447)
                      +  .-.||.         ....+.++.+||.+||.||     ||+|+|+||||+.-
T Consensus       244 m--nf~~P~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al~~pffq~~  297 (538)
T KOG0661|consen  244 M--NFRFPQVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPTASQALQHPFFQVG  297 (538)
T ss_pred             h--ccCCCcCCCCChHHhCcccCHHHHHHHHHHhcCCCccCccHHHHhcCcccccc
Confidence            1  111111         1237999999999999999     99999999999854

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=1.6e-40  Score=320.50  Aligned_cols=242  Identities=25%  Similarity=0.374  Sum_probs=194.9

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+.+++||+|+||+||+|+.      ||+|+++....      .+.......+|+.+++.|+|        +| |  ||.
T Consensus        13 ~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~------~EG~P~taiREisllk~L~~--------~~-~--iv~   75 (323)
T KOG0594|consen   13 YEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFE------EEGVPSTAIREISLLKRLSH--------AN-H--IVR   75 (323)
T ss_pred             HHHHHHhCCCCceEEEEEEEecCCCEEEEEEEecccc------ccCCCchhhHHHHHHHHhCC--------Cc-c--eEE
Confidence            47889999999999999984      99999997743      13345667999999999999        55 2  999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQV  279 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Qi  279 (447)
                      ++|++.....                        ......+|+||||++  .||..++.        ++...++.+++||
T Consensus        76 L~dv~~~~~~------------------------~~~~~~l~lvfe~~d--~DL~~ymd~~~~~~~g~~~~~ik~~m~Ql  129 (323)
T KOG0594|consen   76 LHDVIHTSNN------------------------HRGIGKLYLVFEFLD--RDLKKYMDSLPKKPQGLPPRLIKSFMRQL  129 (323)
T ss_pred             EEeeeeeccc------------------------ccccceEEEEEEeec--ccHHHHHHhccccccCCCHHHHHHHHHHH
Confidence            9999543110                        112347999999999  89999987        4456899999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---------------
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---------------  344 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---------------  344 (447)
                      +.||+|||+ ++|+||||||+||||+.++                    .+||+|||+|+...-+               
T Consensus       130 l~gl~~~H~-~~IlHRDLKPQNlLi~~~G--------------------~lKlaDFGlAra~~ip~~~yt~evvTlWYRa  188 (323)
T KOG0594|consen  130 LRGLAFLHS-HGILHRDLKPQNLLISSSG--------------------VLKLADFGLARAFSIPMRTYTPEVVTLWYRA  188 (323)
T ss_pred             HHHHHHHHh-CCeecccCCcceEEECCCC--------------------cEeeeccchHHHhcCCcccccccEEEeeccC
Confidence            999999999 9999999999999999988                    7999999999876532               


Q ss_pred             -------------------CEEEEecCCCCCCCCCCCCCchH-HHHHhhccCCcccccCC--CCCChhHHHHHH-HHHHh
Q 013230          345 -------------------DIFFLDLSQDPELFSGPKGDKQF-DTYRKMKKVTEDQWEGS--FPKTNVLWLVYL-VDMLL  401 (447)
Q Consensus       345 -------------------g~i~~~~~~~pelf~g~~~~~~~-di~s~lg~~~~~~~~~~--~p~~~~~~~~~~-~~~l~  401 (447)
                                         ||+++||++.+++|.|..+..|+ .|+.++|++....|++.  .|.+...+.... ...+ 
T Consensus       189 PEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~ql~~If~~lGtP~e~~Wp~v~~~~~~k~~f~~~~~~~~l-  267 (323)
T KOG0594|consen  189 PEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEIDQLFRIFRLLGTPNEKDWPGVSSLPDYKAPFPKWPGPKDL-  267 (323)
T ss_pred             HHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHcCCCCccCCCCccccccccccCcCCCCccch-
Confidence                               89999999999999999888888 89999999999999997  444443221111 0000 


Q ss_pred             hccCCCCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          402 LKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       402 ~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                          .......+++..||+.+||+++     ||+.+|.||||+++...
T Consensus       268 ----~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h~yf~~~~~~  311 (323)
T KOG0594|consen  268 ----SSILPKLDPDGIELLSKLLQYDPAKRISAKGALTHPYFSELPEK  311 (323)
T ss_pred             ----HHhccccCccHHHHHHHHhccCcccCcCHHHHhcChhhcccccc
Confidence                0111234578999999999999     99999999999988543

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.9e-40  Score=329.78  Aligned_cols=238  Identities=24%  Similarity=0.314  Sum_probs=199.8

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhcc-ccccCCCCCCCcccce
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN-HLRRNEGDTLNACTTF  205 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~n~~~~i  205 (447)
                      .|++.+.||+|+||+|++|++      ||+|++..+...  ... ....+.+.+|+.+++.+. |        ||    |
T Consensus        18 ~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~--~~~-~~~~~~i~rEi~~~~~~~~H--------pn----I   82 (370)
T KOG0583|consen   18 KYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVS--SKS-QKLDELIKREISILRRLRSH--------PN----I   82 (370)
T ss_pred             ceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhccc--ccc-cccchhhHHHHHHHHHhccC--------CC----E
Confidence            459999999999999999973      999977654221  012 234456779999999999 6        76    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTA  281 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~  281 (447)
                      +++++++.                              +...+|+|||||.|| +|.+++.    +.+..++.+++||+.
T Consensus        83 ~~l~ev~~------------------------------t~~~~~ivmEy~~gG-dL~~~i~~~g~l~E~~ar~~F~Qlis  131 (370)
T KOG0583|consen   83 IRLLEVFA------------------------------TPTKIYIVMEYCSGG-DLFDYIVNKGRLKEDEARKYFRQLIS  131 (370)
T ss_pred             eEEEEEEe------------------------------cCCeEEEEEEecCCc-cHHHHHHHcCCCChHHHHHHHHHHHH
Confidence            99999954                              366799999999998 9998887    999999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecC-CCccccccccCcccccccCCCcEEEeeccceeecC-CC----CEEEEecCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRN-DSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT-GE----DIFFLDLSQDP  355 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~-~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~-~~----g~i~~~~~~~p  355 (447)
                      |++|||+ +||+||||||||||++.+ +                    .+||+|||+|.... ..    .+.....|++|
T Consensus       132 av~y~H~-~gi~HRDLK~ENilld~~~~--------------------~~Kl~DFG~s~~~~~~~~~l~t~cGsp~Y~aP  190 (370)
T KOG0583|consen  132 AVAYCHS-RGIVHRDLKPENILLDGNEG--------------------NLKLSDFGLSAISPGEDGLLKTFCGSPAYAAP  190 (370)
T ss_pred             HHHHHHh-CCEeeCCCCHHHEEecCCCC--------------------CEEEeccccccccCCCCCcccCCCCCcccCCH
Confidence            9999999 999999999999999999 6                    79999999999883 32    22356779999


Q ss_pred             CCCCCCC-CCch-HHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccc-hHHHHHHHHHhcccc-----
Q 013230          356 ELFSGPK-GDKQ-FDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKD-ERDLRSLKKRLDKYN-----  427 (447)
Q Consensus       356 elf~g~~-~~~~-~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~-s~~l~dLl~~mL~~d-----  427 (447)
                      |+|.+.. +... .|+|+ +|++++.+..|..||..........++.  +..+..+..+ |+++++|+++||..|     
T Consensus       191 Evl~~~~~Y~g~~aDvWS-~GViLy~ml~G~~PF~d~~~~~l~~ki~--~~~~~~p~~~~S~~~~~Li~~mL~~~P~~R~  267 (370)
T KOG0583|consen  191 EVLSGKGTYSGKAADVWS-LGVILYVLLCGRLPFDDSNVPNLYRKIR--KGEFKIPSYLLSPEARSLIEKMLVPDPSTRI  267 (370)
T ss_pred             HHhCCCCCcCCchhhhhh-hHHHHHHHHhCCCCCCCccHHHHHHHHh--cCCccCCCCcCCHHHHHHHHHHcCCCcccCC
Confidence            9999976 6644 49999 9999999999999999876666666655  4455555666 999999999999999     


Q ss_pred             CHHHHHcCCCCCC
Q 013230          428 SAKEAIFDPFFSD  440 (447)
Q Consensus       428 sa~elL~HPff~~  440 (447)
                      |+.+++.||||+.
T Consensus       268 t~~~i~~h~w~~~  280 (370)
T KOG0583|consen  268 TLLEILEHPWFQK  280 (370)
T ss_pred             CHHHHhhChhhcc
Confidence            9999999999996

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=2.9e-40  Score=310.69  Aligned_cols=236  Identities=21%  Similarity=0.304  Sum_probs=183.2

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+.+.++|+|+||.||+|++      ||||++.-..      +++...+-++|||++|++|+|        +|    +|.
T Consensus         4 YE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Ese------dd~~VkKIAlREIrmLKqLkH--------~N----LVn   65 (396)
T KOG0593|consen    4 YEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESE------DDPVVKKIALREIRMLKQLKH--------EN----LVN   65 (396)
T ss_pred             HhhhhccccCcceEEEEeccCCcccEEEEEeeccCC------ccHHHHHHHHHHHHHHHhccc--------ch----HHH
Confidence            58999999999999999995      9999876332      344555778999999999999        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      ++++|-                              .+..+++|+|||+  .++.+-+.     ++...++.+++|++.|
T Consensus        66 LiEVFr------------------------------rkrklhLVFE~~d--hTvL~eLe~~p~G~~~~~vk~~l~Q~l~a  113 (396)
T KOG0593|consen   66 LIEVFR------------------------------RKRKLHLVFEYCD--HTVLHELERYPNGVPSELVKKYLYQLLKA  113 (396)
T ss_pred             HHHHHH------------------------------hcceeEEEeeecc--hHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            999843                              3667999999999  44444443     9999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEEEEec-----CCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDL-----SQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i~~~~-----~~~pel  357 (447)
                      +.|+|+ +++||||||||||||+.++                    .+||||||+||....+|-.|++.     |.+||+
T Consensus       114 i~~cHk-~n~IHRDIKPENILit~~g--------------------vvKLCDFGFAR~L~~pgd~YTDYVATRWYRaPEL  172 (396)
T KOG0593|consen  114 IHFCHK-NNCIHRDIKPENILITQNG--------------------VVKLCDFGFARTLSAPGDNYTDYVATRWYRAPEL  172 (396)
T ss_pred             hhhhhh-cCeecccCChhheEEecCC--------------------cEEeccchhhHhhcCCcchhhhhhhhhhccChhh
Confidence            999999 9999999999999999998                    79999999999998777666655     888888


Q ss_pred             CCCC-CCCchHHHHHhhccCCcccccCC--CCCChhHHHHHHHH------------HHhhccC-----CCC---------
Q 013230          358 FSGP-KGDKQFDTYRKMKKVTEDQWEGS--FPKTNVLWLVYLVD------------MLLLKKT-----FDR---------  408 (447)
Q Consensus       358 f~g~-~~~~~~di~s~lg~~~~~~~~~~--~p~~~~~~~~~~~~------------~l~~~~~-----~~~---------  408 (447)
                      .-|+ .+...+|||+ +|++..++.+|.  +|-....-.-|...            ++..++.     +|.         
T Consensus       173 LvGDtqYG~pVDiWA-iGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~epLe~  251 (396)
T KOG0593|consen  173 LVGDTQYGKPVDIWA-IGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPEPLER  251 (396)
T ss_pred             hcccCcCCCcccchh-hhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCCccchhh
Confidence            8884 4445558998 888877777765  23222111111111            1111111     111         


Q ss_pred             -CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCC
Q 013230          409 -SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       409 -~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~  441 (447)
                       ...++.-+.||+++||+.|     |.+|+|.||||.++
T Consensus       252 k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~H~yFd~~  290 (396)
T KOG0593|consen  252 KYPKISNVLLDLLKKCLKMDPDDRLSCEQLLHHPYFDGF  290 (396)
T ss_pred             hcccchHHHHHHHHHHhcCCccccccHHHHhcChHHHHH
Confidence             2256889999999999999     99999999999654

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-39  Score=284.55  Aligned_cols=224  Identities=31%  Similarity=0.505  Sum_probs=191.9

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |...++||+|+||+||+|++      ||+|.++.+..      .+......++||-+++.|+|        .|    ||+
T Consensus         4 ydkmekigegtygtvfkarn~~t~eivalkrvrlddd------degvpssalreicllkelkh--------kn----ivr   65 (292)
T KOG0662|consen    4 YDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDD------DEGVPSSALREICLLKELKH--------KN----IVR   65 (292)
T ss_pred             hHHHHhhcCCcceeeEecccCCccceEEEEEEeccCC------CCCCcHHHHHHHHHHHHhhh--------cc----eee
Confidence            47889999999999999995      99999997753      44556778999999999999        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      ++|+                              ...++.+-+|+|||+  ++|..+..     ++...+++++.|++.|
T Consensus        66 l~dv------------------------------lhsdkkltlvfe~cd--qdlkkyfdslng~~d~~~~rsfmlqllrg  113 (292)
T KOG0662|consen   66 LHDV------------------------------LHSDKKLTLVFEFCD--QDLKKYFDSLNGDLDPEIVRSFMLQLLRG  113 (292)
T ss_pred             hhhh------------------------------hccCceeEEeHHHhh--HHHHHHHHhcCCcCCHHHHHHHHHHHHhh
Confidence            9998                              445788999999998  79999876     8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------------------
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------------------  344 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------------------  344 (447)
                      |.|+|+ +++.||||||+|+||..++                    .+||+|||+||...-+                  
T Consensus       114 l~fchs-hnvlhrdlkpqnllin~ng--------------------elkladfglarafgipvrcysaevvtlwyrppdv  172 (292)
T KOG0662|consen  114 LGFCHS-HNVLHRDLKPQNLLINRNG--------------------ELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDV  172 (292)
T ss_pred             hhhhhh-hhhhhccCCcceEEeccCC--------------------cEEecccchhhhcCCceEeeeceeeeeeccCcce
Confidence            999999 9999999999999999998                    8999999999875543                  


Q ss_pred             ----------------CEEEEec-CCCCCCCCCCCCCchH-HHHHhhccCCcccccCC--CCCChh--------HHHHHH
Q 013230          345 ----------------DIFFLDL-SQDPELFSGPKGDKQF-DTYRKMKKVTEDQWEGS--FPKTNV--------LWLVYL  396 (447)
Q Consensus       345 ----------------g~i~~~~-~~~pelf~g~~~~~~~-di~s~lg~~~~~~~~~~--~p~~~~--------~~~~~~  396 (447)
                                      ||+++|+ -.|.++|+|...++|+ .||..+|+++.+.|++.  .|.+..        .|.   
T Consensus       173 lfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~wps~t~lpdyk~yp~ypattsws---  249 (292)
T KOG0662|consen  173 LFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQWPSMTKLPDYKPYPIYPATTSWS---  249 (292)
T ss_pred             eeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccccCCccccCCCCcccCCccccchHH---
Confidence                            8888888 5578999999999999 89999999999999986  232221        121   


Q ss_pred             HHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCC
Q 013230          397 VDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       397 ~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~  441 (447)
                       +++         .+.+...+||++++|.-+     +|+++|+||||.+.
T Consensus       250 -qiv---------p~lns~grdllqkll~cnp~qrisaeaalqhpyf~d~  289 (292)
T KOG0662|consen  250 -QIV---------PKLNSTGRDLLQKLLKCNPAQRISAEAALQHPYFSDF  289 (292)
T ss_pred             -HHh---------hhhcchhHHHHHHHhccCcccccCHHHHhcCcccccc
Confidence             111         234556899999999999     99999999999986

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.1e-38  Score=325.68  Aligned_cols=240  Identities=21%  Similarity=0.341  Sum_probs=208.1

Q ss_pred             CCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccce
Q 013230          132 SDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~i  205 (447)
                      ..|++.+.||.|+-|.|.+|++      +|||+|.+...     ..+.....+.+||.||+.|.|        ||    +
T Consensus        12 GpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~-----~s~s~~~~IerEIviMkLi~H--------pn----V   74 (786)
T KOG0588|consen   12 GPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSE-----LSSSQPAGIEREIVIMKLIEH--------PN----V   74 (786)
T ss_pred             cceeccccccCCCCceehhhhcccccceeEEEeeccccc-----cccccccchhhhhHHHHHhcC--------CC----e
Confidence            3469999999999999999985      99999987643     344555778999999999999        88    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTA  281 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~  281 (447)
                      +++||+|.                              ++.++|+|.||+.|| -|++++.    +++.++..+++||+.
T Consensus        75 l~LydVwe------------------------------~~~~lylvlEyv~gG-ELFdylv~kG~l~e~eaa~ff~QIi~  123 (786)
T KOG0588|consen   75 LRLYDVWE------------------------------NKQHLYLVLEYVPGG-ELFDYLVRKGPLPEREAAHFFRQILD  123 (786)
T ss_pred             eeeeeeec------------------------------cCceEEEEEEecCCc-hhHHHHHhhCCCCCHHHHHHHHHHHH
Confidence            99999954                              377899999999999 6666654    999999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE----EEecCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF----FLDLSQDPEL  357 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i----~~~~~~~pel  357 (447)
                      |+.|||. .+|+||||||||+||+..+                    .|||+|||+|....++.++    ...-|.+||+
T Consensus       124 gv~yCH~-~~icHRDLKpENlLLd~~~--------------------nIKIADFGMAsLe~~gklLeTSCGSPHYA~PEI  182 (786)
T KOG0588|consen  124 GVSYCHA-FNICHRDLKPENLLLDVKN--------------------NIKIADFGMASLEVPGKLLETSCGSPHYAAPEI  182 (786)
T ss_pred             HHHHHhh-hcceeccCCchhhhhhccc--------------------CEeeeccceeecccCCccccccCCCcccCCchh
Confidence            9999999 9999999999999999998                    7999999999987776442    2334889999


Q ss_pred             CCCCCCCchH-HHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHH
Q 013230          358 FSGPKGDKQF-DTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKE  431 (447)
Q Consensus       358 f~g~~~~~~~-di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~e  431 (447)
                      ..|..++... |+|+ +|++.+..++|.+||.+......+.+.-  +..|..|..++++++|||.+||..|     |.+|
T Consensus       183 V~G~pYdG~~sDVWS-CGVILfALLtG~LPFdDdNir~LLlKV~--~G~f~MPs~Is~eaQdLLr~ml~VDp~~RiT~~e  259 (786)
T KOG0588|consen  183 VSGRPYDGRPSDVWS-CGVILFALLTGKLPFDDDNIRVLLLKVQ--RGVFEMPSNISSEAQDLLRRMLDVDPSTRITTEE  259 (786)
T ss_pred             hcCCCCCCCccccch-hHHHHHHHHhCCCCCCCccHHHHHHHHH--cCcccCCCcCCHHHHHHHHHHhccCccccccHHH
Confidence            9999888766 9999 9999999999999998776666665555  4677778999999999999999999     9999


Q ss_pred             HHcCCCCCCCCC
Q 013230          432 AIFDPFFSDLIV  443 (447)
Q Consensus       432 lL~HPff~~~~~  443 (447)
                      +++|||+.....
T Consensus       260 I~kHP~l~g~~~  271 (786)
T KOG0588|consen  260 ILKHPFLSGYTS  271 (786)
T ss_pred             HhhCchhhcCCC
Confidence            999999986643

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.4e-38  Score=310.45  Aligned_cols=241  Identities=19%  Similarity=0.182  Sum_probs=211.4

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||.|.-|+||+|+.      +|+|++.+...     ...+...++..|..||+.++|        |.    +..
T Consensus        79 f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l-----~~rkKl~Ra~tE~eIL~~lDH--------PF----lPT  141 (459)
T KOG0610|consen   79 FRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESL-----ASRKKLKRAQTEREILSLLDH--------PF----LPT  141 (459)
T ss_pred             HHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHH-----hhhhHHHHHHHHHHHHHhcCC--------Cc----cch
Confidence            58999999999999999983      99999986644     334556788999999999999        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      ||..|                              .++...|+|||||.|| +|..+.+      |++..+|+|+.+|+.
T Consensus       142 LYa~f------------------------------et~~~~cl~meyCpGG-dL~~LrqkQp~~~fse~~aRFYaAEvl~  190 (459)
T KOG0610|consen  142 LYASF------------------------------ETDKYSCLVMEYCPGG-DLHSLRQKQPGKRFSESAARFYAAEVLL  190 (459)
T ss_pred             hhhee------------------------------eccceeEEEEecCCCc-cHHHHHhhCCCCccchhhHHHHHHHHHH
Confidence            99984                              4477899999999999 9999876      999999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----------------
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----------------  344 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----------------  344 (447)
                      ||+|||- .|||.||||||||||..+|                    +|.|+||-||......                 
T Consensus       191 ALEYLHm-lGivYRDLKPENILvredG--------------------HIMLsDFDLS~~~~~~Pt~~~s~~~~~~~~~~~  249 (459)
T KOG0610|consen  191 ALEYLHM-LGIVYRDLKPENILVREDG--------------------HIMLSDFDLSLRCPVSPTLVKSSSPRSSGSQPS  249 (459)
T ss_pred             HHHHHHh-hceeeccCCcceeEEecCC--------------------cEEeeeccccccCCCCCeeeccCCCCCCCCCcc
Confidence            9999999 9999999999999999998                    7888888877432110                 


Q ss_pred             --------------------------------------------CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCccc
Q 013230          345 --------------------------------------------DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQ  380 (447)
Q Consensus       345 --------------------------------------------g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~  380 (447)
                                                                  .++.++-|.+||+..|...+..+|+|. +|+.+|+|
T Consensus       250 ~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHgsAVDWWt-fGIflYEm  328 (459)
T KOG0610|consen  250 CRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHGSAVDWWT-FGIFLYEM  328 (459)
T ss_pred             cccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCCCCchhhHHH-HHHHHHHH
Confidence                                                        234555699999999988888889998 99999999


Q ss_pred             ccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc---------CHHHHHcCCCCCCCCCC
Q 013230          381 WEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN---------SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       381 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d---------sa~elL~HPff~~~~~~  444 (447)
                      +-|..||........+..++.+...||....++..++|||++||++|         .|.|+.+||||+++.++
T Consensus       329 LyG~TPFKG~~~~~Tl~NIv~~~l~Fp~~~~vs~~akDLIr~LLvKdP~kRlg~~rGA~eIK~HpFF~gVnWa  401 (459)
T KOG0610|consen  329 LYGTTPFKGSNNKETLRNIVGQPLKFPEEPEVSSAAKDLIRKLLVKDPSKRLGSKRGAAEIKRHPFFEGVNWA  401 (459)
T ss_pred             HhCCCCcCCCCchhhHHHHhcCCCcCCCCCcchhHHHHHHHHHhccChhhhhccccchHHhhcCccccCCChh
Confidence            99999998887788889999888899987789999999999999999         69999999999998764

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-38  Score=321.63  Aligned_cols=235  Identities=23%  Similarity=0.307  Sum_probs=207.3

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |...++||+|+-|.||.|+.      ||+|.+.+.        .|...+-+++|+.+|+.++|        +|    ||.
T Consensus       275 y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~--------~Q~~keLilnEi~Vm~~~~H--------~N----iVn  334 (550)
T KOG0578|consen  275 YTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLR--------KQPKKELLLNEILVMRDLHH--------PN----IVN  334 (550)
T ss_pred             hcchhhhccccccceeeeeeccCCceEEEEEEEec--------cCCchhhhHHHHHHHHhccc--------hH----HHH
Confidence            57889999999999999984      999988764        33455778999999999999        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~  284 (447)
                      +++.|.+                              .+.+|+||||++|| +|.+++.   +++.++..+.++++.||+
T Consensus       335 fl~Sylv------------------------------~deLWVVMEym~gg-sLTDvVt~~~~~E~qIA~Icre~l~aL~  383 (550)
T KOG0578|consen  335 FLDSYLV------------------------------GDELWVVMEYMEGG-SLTDVVTKTRMTEGQIAAICREILQGLK  383 (550)
T ss_pred             HHHHhcc------------------------------cceeEEEEeecCCC-chhhhhhcccccHHHHHHHHHHHHHHHH
Confidence            9999765                              46799999999999 8999887   899999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPELFS  359 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pelf~  359 (447)
                      |||. .||+|||||.+|||+..++                    .+||+|||+|......     ..+....||+||+..
T Consensus       384 fLH~-~gIiHrDIKSDnILL~~~g--------------------~vKltDFGFcaqi~~~~~KR~TmVGTPYWMAPEVvt  442 (550)
T KOG0578|consen  384 FLHA-RGIIHRDIKSDNILLTMDG--------------------SVKLTDFGFCAQISEEQSKRSTMVGTPYWMAPEVVT  442 (550)
T ss_pred             HHHh-cceeeeccccceeEeccCC--------------------cEEEeeeeeeeccccccCccccccCCCCccchhhhh
Confidence            9999 9999999999999999998                    7999999999887655     346677899999999


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh-ccCCCCCccchHHHHHHHHHhcccc-----CHHHHH
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL-KKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAI  433 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~-~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL  433 (447)
                      -..+..+.|||+ ||.+..+|..|..||.+..-.+.+.-+... ...+..+..+|++++|||.+||+.|     ||.|||
T Consensus       443 rk~YG~KVDIWS-LGIMaIEMveGEPPYlnE~PlrAlyLIa~ng~P~lk~~~klS~~~kdFL~~cL~~dv~~RasA~eLL  521 (550)
T KOG0578|consen  443 RKPYGPKVDIWS-LGIMAIEMVEGEPPYLNENPLRALYLIATNGTPKLKNPEKLSPELKDFLDRCLVVDVEQRASAKELL  521 (550)
T ss_pred             hcccCccccchh-hhhHHHHHhcCCCCccCCChHHHHHHHhhcCCCCcCCccccCHHHHHHHHHHhhcchhcCCCHHHHh
Confidence            989999999999 999999999999999987666666655442 3566677899999999999999999     999999


Q ss_pred             cCCCCCCC
Q 013230          434 FDPFFSDL  441 (447)
Q Consensus       434 ~HPff~~~  441 (447)
                      +||||+..
T Consensus       522 ~HpFl~~a  529 (550)
T KOG0578|consen  522 EHPFLKMA  529 (550)
T ss_pred             cChhhhhc
Confidence            99999643

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-38  Score=309.61  Aligned_cols=246  Identities=23%  Similarity=0.281  Sum_probs=200.4

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccc------cchHHHHHHHHHHHhccccccCCCCCCC
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQ------KKSEELLEEVVLSWTLNHLRRNEGDTLN  200 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~------~~~~~~~~Ei~il~~L~h~~~~~~~~~n  200 (447)
                      .|++++.||+|.||.|.+|++      ||||++.+.......+...      ...+.+.+||.||++|.|        ||
T Consensus        98 qy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H--------~n  169 (576)
T KOG0585|consen   98 QYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHH--------PN  169 (576)
T ss_pred             heehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCC--------cC
Confidence            359999999999999999984      9999998764322222111      124689999999999999        88


Q ss_pred             cccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHH
Q 013230          201 ACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLL  276 (447)
Q Consensus       201 ~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~  276 (447)
                          ||+|+++.  .++                          ..+.+|||+|||..| .+...-.    +++.++|.|+
T Consensus       170 ----VV~LiEvL--DDP--------------------------~s~~~YlVley~s~G-~v~w~p~d~~els~~~Ar~yl  216 (576)
T KOG0585|consen  170 ----VVKLIEVL--DDP--------------------------ESDKLYLVLEYCSKG-EVKWCPPDKPELSEQQARKYL  216 (576)
T ss_pred             ----eeEEEEee--cCc--------------------------ccCceEEEEEeccCC-ccccCCCCcccccHHHHHHHH
Confidence                99999982  111                          146799999999988 4432221    8899999999


Q ss_pred             HHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----------CE
Q 013230          277 VQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----------DI  346 (447)
Q Consensus       277 ~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----------g~  346 (447)
                      ++++.||.|||. +|||||||||.|+||+.++                    .|||+|||.|......          ..
T Consensus       217 rDvv~GLEYLH~-QgiiHRDIKPsNLLl~~~g--------------------~VKIsDFGVs~~~~~~~~~~~d~~L~~t  275 (576)
T KOG0585|consen  217 RDVVLGLEYLHY-QGIIHRDIKPSNLLLSSDG--------------------TVKISDFGVSNEFPQGSDEGSDDQLSRT  275 (576)
T ss_pred             HHHHHHHHHHHh-cCeeccccchhheEEcCCC--------------------cEEeeccceeeecccCCccccHHHHhhc
Confidence            999999999999 9999999999999999998                    8999999999865221          34


Q ss_pred             EEEecCCCCCCCCCCC---CC-chHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHH
Q 013230          347 FFLDLSQDPELFSGPK---GD-KQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKR  422 (447)
Q Consensus       347 i~~~~~~~pelf~g~~---~~-~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~  422 (447)
                      +.+..++|||+..+..   .. ...|||+ +|+.+|.+.-|.+||....-.....++....-.||....+..+++|||++
T Consensus       276 vGTPAF~APE~c~~~~~~~~~g~a~DiWa-lGVTLYCllfG~~PF~~~~~~~l~~KIvn~pL~fP~~pe~~e~~kDli~~  354 (576)
T KOG0585|consen  276 VGTPAFFAPELCSGGNSFSYSGFALDIWA-LGVTLYCLLFGQLPFFDDFELELFDKIVNDPLEFPENPEINEDLKDLIKR  354 (576)
T ss_pred             CCCccccchHhhcCCCCccccchhhhhhh-hhhhHHHhhhccCCcccchHHHHHHHHhcCcccCCCcccccHHHHHHHHH
Confidence            5667789999987732   22 3449999 99999999999999988777777777776666788777899999999999


Q ss_pred             hcccc-----CHHHHHcCCCCCCC
Q 013230          423 LDKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       423 mL~~d-----sa~elL~HPff~~~  441 (447)
                      ||++|     +..++..|||....
T Consensus       355 lL~KdP~~Ri~l~~ik~Hpwvt~~  378 (576)
T KOG0585|consen  355 LLEKDPEQRITLPDIKLHPWVTRD  378 (576)
T ss_pred             HhhcChhheeehhhheecceeccC
Confidence            99999     99999999999754

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-37  Score=303.22  Aligned_cols=236  Identities=21%  Similarity=0.252  Sum_probs=193.7

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      +...+.||+|+||.||++.+      .|+|.+.....       .+ .+.+.+|+.+|.+|+|        ||    ||+
T Consensus        19 ~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~-------~~-~~~l~~Ei~iL~~l~~--------p~----IV~   78 (313)
T KOG0198|consen   19 WSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDS-------PT-SESLEREIRILSRLNH--------PN----IVQ   78 (313)
T ss_pred             hhhhccccCccceEEEEEEecCCCcceeeeeeecccc-------hh-HHHHHHHHHHHHhCCC--------CC----EEe
Confidence            37778999999999999974      89998875521       11 5778999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCC-CceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPE-NQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      +++....                             .+ ..++|.|||+.+| +|.+++.     +++..++.+.+||+.
T Consensus        79 ~~G~~~~-----------------------------~~~~~~~i~mEy~~~G-sL~~~~~~~g~~l~E~~v~~ytr~iL~  128 (313)
T KOG0198|consen   79 YYGSSSS-----------------------------RENDEYNIFMEYAPGG-SLSDLIKRYGGKLPEPLVRRYTRQILE  128 (313)
T ss_pred             eCCcccc-----------------------------ccCeeeEeeeeccCCC-cHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            9986221                             11 2589999999999 9999987     799999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEec-CCCccccccccCcccccccCCCcEEEeeccceeecCC--------CCEEEEecC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSR-NDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG--------EDIFFLDLS  352 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~-~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~--------~g~i~~~~~  352 (447)
                      ||+|||+ +|||||||||+|||++. ++                    .+||+|||+|+....        ........|
T Consensus       129 GL~ylHs-~g~vH~DiK~~NiLl~~~~~--------------------~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~  187 (313)
T KOG0198|consen  129 GLAYLHS-KGIVHCDIKPANILLDPSNG--------------------DVKLADFGLAKKLESKGTKSDSELSVQGTPNY  187 (313)
T ss_pred             HHHHHHh-CCEeccCcccceEEEeCCCC--------------------eEEeccCccccccccccccccccccccCCccc
Confidence            9999999 99999999999999999 56                    799999999987652        123455779


Q ss_pred             CCCCCCCC-CCCCchHHHHHhhccCCcccccCCCCCCh-hHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc---
Q 013230          353 QDPELFSG-PKGDKQFDTYRKMKKVTEDQWEGSFPKTN-VLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN---  427 (447)
Q Consensus       353 ~~pelf~g-~~~~~~~di~s~lg~~~~~~~~~~~p~~~-~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d---  427 (447)
                      |+||.... ......+|||+ +|++..+|.+|..|+.+ ......+..+.......+.+..++++++|||.+||++|   
T Consensus       188 maPEvi~~g~~~~~~sDiWS-lGCtVvEM~Tg~~PW~~~~~~~~~~~~ig~~~~~P~ip~~ls~~a~~Fl~~C~~~~p~~  266 (313)
T KOG0198|consen  188 MAPEVIRNGEVARRESDIWS-LGCTVVEMLTGKPPWSEFFEEAEALLLIGREDSLPEIPDSLSDEAKDFLRKCFKRDPEK  266 (313)
T ss_pred             cCchhhcCCCcCCccchhhh-cCCEEEeccCCCCcchhhcchHHHHHHHhccCCCCCCCcccCHHHHHHHHHHhhcCccc
Confidence            99999984 33334679999 99999999999999887 34444455555444334556779999999999999999   


Q ss_pred             --CHHHHHcCCCCCCC
Q 013230          428 --SAKEAIFDPFFSDL  441 (447)
Q Consensus       428 --sa~elL~HPff~~~  441 (447)
                        ||+++|+|||.+..
T Consensus       267 Rpta~eLL~hpf~~~~  282 (313)
T KOG0198|consen  267 RPTAEELLEHPFLKQN  282 (313)
T ss_pred             CcCHHHHhhChhhhcc
Confidence              99999999999753

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-39  Score=308.71  Aligned_cols=241  Identities=22%  Similarity=0.260  Sum_probs=185.8

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |..++.||+|+||.|..|.+      ||+|++...-      ..+...++.+||+++|+.++|        +|    ||.
T Consensus        24 y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F------~~~~~akRtlRElklLr~~~H--------eN----Ii~   85 (359)
T KOG0660|consen   24 YVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPF------ENQIDAKRTLRELKLLRHLRH--------EN----IIG   85 (359)
T ss_pred             ecccccccCcceeeEEEEEEcCCCCEeehhhhhhhh------hchHHHHHHHHHHHHHHHhcC--------CC----cce
Confidence            46689999999999999874      9999887321      244566889999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++..                         +....-+.+|+|+|+|+  .||.++++    ++++.++.++.||+.||
T Consensus        86 l~di~~p-------------------------~~~~~f~DvYiV~elMe--tDL~~iik~~~~L~d~H~q~f~YQiLrgL  138 (359)
T KOG0660|consen   86 LLDIFRP-------------------------PSRDKFNDVYLVFELME--TDLHQIIKSQQDLTDDHAQYFLYQILRGL  138 (359)
T ss_pred             EEeeccc-------------------------ccccccceeEEehhHHh--hHHHHHHHcCccccHHHHHHHHHHHHHhc
Confidence            9999643                         01122356999999996  89999998    89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCC----C---------------
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG----E---------------  344 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~----~---------------  344 (447)
                      +|+|+ .+|+||||||.|+|++.+.                    .+||||||+||....    .               
T Consensus       139 KyiHS-AnViHRDLKPsNll~n~~c--------------------~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAPE  197 (359)
T KOG0660|consen  139 KYIHS-ANVIHRDLKPSNLLLNADC--------------------DLKICDFGLARYLDKFFEDGFMTEYVATRWYRAPE  197 (359)
T ss_pred             chhhc-ccccccccchhheeeccCC--------------------CEEeccccceeeccccCcccchhcceeeeeecCHH
Confidence            99999 9999999999999999997                    799999999999842    1               


Q ss_pred             -----------------CEEEEecCCCCCCCCCCCCCchH-HHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCC
Q 013230          345 -----------------DIFFLDLSQDPELFSGPKGDKQF-DTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTF  406 (447)
Q Consensus       345 -----------------g~i~~~~~~~pelf~g~~~~~~~-di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~  406 (447)
                                       |||++||+++.++|+|+....|+ -|...+|++..+.+........   ..|+ +.+...+..
T Consensus       198 lll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~a---r~yi-~slp~~p~~  273 (359)
T KOG0660|consen  198 LLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEKA---RPYI-KSLPQIPKQ  273 (359)
T ss_pred             HHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHHH---HHHH-HhCCCCCCC
Confidence                             77777777777777777777777 5666677776665543321111   0111 111111111


Q ss_pred             CC---CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          407 DR---SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       407 ~~---~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                      +.   ....++++.|||++||++|     ||+|+|+||||+.+..+
T Consensus       274 ~f~~~fp~a~p~AidLlekmL~fdP~kRita~eAL~hPYl~~~hdp  319 (359)
T KOG0660|consen  274 PFSSIFPNANPLAIDLLEKMLVFDPKKRITAEEALAHPYLAPYHDP  319 (359)
T ss_pred             CHHHHcCCCCHHHHHHHHHHhccCccccCCHHHHhcChhhhhhcCC
Confidence            10   2368999999999999999     99999999999987654

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=3.2e-38  Score=316.80  Aligned_cols=234  Identities=21%  Similarity=0.275  Sum_probs=206.0

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|.+.+.||+|+||.||+|+.      ||+|.+.+.+      ...+....+.+|++|++.|+|        ||    ||
T Consensus         3 ~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~g------r~~k~l~~l~~ev~i~r~lkH--------pn----iv   64 (808)
T KOG0597|consen    3 QYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSG------RNEKELKNLRQEVRILRSLKH--------PN----IV   64 (808)
T ss_pred             chhHHHHhcCCccceeeecccccceeEEEEEEehhcC------CchHHHHHHHHHHHHHHhcCC--------cc----hh
Confidence            357889999999999999983      9999887654      345556779999999999999        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      +++++|                              ++...+|+|.|||. | +|..++.    ++++.++.++.|++.|
T Consensus        65 ~m~esf------------------------------Et~~~~~vVte~a~-g-~L~~il~~d~~lpEe~v~~~a~~LVsa  112 (808)
T KOG0597|consen   65 EMLESF------------------------------ETSAHLWVVTEYAV-G-DLFTILEQDGKLPEEQVRAIAYDLVSA  112 (808)
T ss_pred             hHHHhh------------------------------cccceEEEEehhhh-h-hHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence            999994                              45788999999998 6 9999987    9999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE-----EEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF-----FLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i-----~~~~~~~pel  357 (447)
                      |.|||+ ++|+|||+||.|||+...+                    .+|+||||+||.+..+..+     ...+||+||+
T Consensus       113 L~yLhs-~rilhrd~kPqniLl~~~~--------------------~~KlcdFg~Ar~m~~~t~vltsikGtPlYmAPEl  171 (808)
T KOG0597|consen  113 LYYLHS-NRILHRDMKPQNILLEKGG--------------------TLKLCDFGLARAMSTNTSVLTSIKGTPLYMAPEL  171 (808)
T ss_pred             HHHHHh-cCcccccCCcceeeecCCC--------------------ceeechhhhhhhcccCceeeeeccCcccccCHHH
Confidence            999999 9999999999999999998                    7999999999998877443     3466999999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHH
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEA  432 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~el  432 (447)
                      ..+..++...|+|+ +|++.|+++.|..||......+....++.  ...+.+...+.++++||+++|.+|     |..++
T Consensus       172 v~e~pyd~~sDlWs-lGcilYE~~~G~PPF~a~si~~Lv~~I~~--d~v~~p~~~S~~f~nfl~gLL~kdP~~RltW~~L  248 (808)
T KOG0597|consen  172 VEEQPYDHTSDLWS-LGCILYELYVGQPPFYARSITQLVKSILK--DPVKPPSTASSSFVNFLQGLLIKDPAQRLTWTDL  248 (808)
T ss_pred             HcCCCccchhhHHH-HHHHHHHHhcCCCCchHHHHHHHHHHHhc--CCCCCcccccHHHHHHHHHHhhcChhhcccHHHH
Confidence            99999999999999 99999999999999998777776666663  333444689999999999999999     99999


Q ss_pred             HcCCCCCC
Q 013230          433 IFDPFFSD  440 (447)
Q Consensus       433 L~HPff~~  440 (447)
                      +.|||.++
T Consensus       249 l~HpF~k~  256 (808)
T KOG0597|consen  249 LGHPFWKG  256 (808)
T ss_pred             hcChHHhh
Confidence            99999874

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=8e-39  Score=308.72  Aligned_cols=236  Identities=21%  Similarity=0.248  Sum_probs=186.4

Q ss_pred             CcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+..+.+|.|+||.||+|.      .+|||.+-.+..            --.+|+.+|+.++|        ||    ||+
T Consensus        26 ~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r------------~knrEl~im~~l~H--------pN----IV~   81 (364)
T KOG0658|consen   26 YEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR------------YKNRELQIMRKLDH--------PN----IVR   81 (364)
T ss_pred             EEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCC------------cCcHHHHHHHhcCC--------cC----eee
Confidence            3778999999999999997      499998875532            12689999999999        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQV  279 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Qi  279 (447)
                      +.-+|...+..                         ++-++.+||||++  ++|.++++        ++.-.++.++.||
T Consensus        82 L~~~f~~~~~~-------------------------d~~~lnlVleymP--~tL~~~~r~~~~~~~~mp~~~iKLYt~Ql  134 (364)
T KOG0658|consen   82 LLYFFSSSTES-------------------------DEVYLNLVLEYMP--ETLYRVIRHYTRANQRMPLLEIKLYTYQL  134 (364)
T ss_pred             EEEEEEecCCC-------------------------chhHHHHHHHhch--HHHHHHHHHHhhcCCCCceeeeHHHHHHH
Confidence            99988764421                         1335779999998  79999887        8888999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---------------
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---------------  344 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---------------  344 (447)
                      ++||+|||+ .||+||||||+|||++.+..                   .+||||||.|+....+               
T Consensus       135 frgl~yLh~-~~IcHRDIKPqNlLvD~~tg-------------------~LKicDFGSAK~L~~~epniSYicSRyYRaP  194 (364)
T KOG0658|consen  135 FRGLAYLHS-HGICHRDIKPQNLLVDPDTG-------------------VLKICDFGSAKVLVKGEPNISYICSRYYRAP  194 (364)
T ss_pred             HHHHHHHHh-cCcccCCCChheEEEcCCCC-------------------eEEeccCCcceeeccCCCceeEEEeccccCH
Confidence            999999999 99999999999999999863                   7999999999886543               


Q ss_pred             ------------------CEEEEecCCCCCCCCCCCCCchH-HHHHhhccCCcccccCCCCCChh-HHHHHHHHHHhhcc
Q 013230          345 ------------------DIFFLDLSQDPELFSGPKGDKQF-DTYRKMKKVTEDQWEGSFPKTNV-LWLVYLVDMLLLKK  404 (447)
Q Consensus       345 ------------------g~i~~~~~~~pelf~g~~~~~~~-di~s~lg~~~~~~~~~~~p~~~~-~~~~~~~~~l~~~~  404 (447)
                                        ||+++||+.|.++|+|....+|+ .|...+|+++.+......|.+.. .+++.....+  .+
T Consensus       195 ELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik~lG~Pt~e~I~~mn~~y~~~~~p~ik~~~~--~~  272 (364)
T KOG0658|consen  195 ELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIKVLGTPTREDIKSMNPNYTEFKFPQIKAHPW--HK  272 (364)
T ss_pred             HHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHHHhCCCCHHHHhhcCcccccccCcccccccc--ee
Confidence                              88888888888888888888887 78888888887766655444221 0000000000  00


Q ss_pred             CCCCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          405 TFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       405 ~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                      .  .....++++.||+.++|+|+     ||.|+|+||||+.+..+
T Consensus       273 ~--~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~h~fFdelr~~  315 (364)
T KOG0658|consen  273 V--FFKRLPPDALDLLSKLLQYSPSKRLSALEALAHPFFDELRDP  315 (364)
T ss_pred             e--cccCCCHHHHHHHHHHhccChhhcCCHHHHhcchhhHHhhCc
Confidence            0  12457899999999999999     99999999999987654

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=5.8e-39  Score=294.04  Aligned_cols=239  Identities=21%  Similarity=0.217  Sum_probs=202.0

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|.|+.|++|.+      +|+|+|..+.      ..+...+.+.+|++|.+.|+|        ||    ||+
T Consensus        13 y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k------~~~~~~e~l~rEarIC~~LqH--------P~----Ivr   74 (355)
T KOG0033|consen   13 YDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKK------LSARDFQKLEREARICRKLQH--------PN----IVR   74 (355)
T ss_pred             hhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhh------hccccHHHHHHHHHHHHhcCC--------Cc----Eee
Confidence            47789999999999999864      8889887554      233356889999999999999        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhh-hhc---CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLES-FVL---LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~-~i~---l~~~~~~~i~~Qil~gL  283 (447)
                      +.+.+                              ..+...|||+|++.|| +|.. ++.   +++..+..+++||+.||
T Consensus        75 L~~ti------------------------------~~~~~~ylvFe~m~G~-dl~~eIV~R~~ySEa~aSH~~rQiLeal  123 (355)
T KOG0033|consen   75 LHDSI------------------------------QEESFHYLVFDLVTGG-ELFEDIVAREFYSEADASHCIQQILEAL  123 (355)
T ss_pred             hhhhh------------------------------cccceeEEEEecccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99983                              3366789999999998 6654 444   89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDPELFS  359 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~pelf~  359 (447)
                      +|+|. +||||||+||+|+|+.+...                 +..+||+|||+|....+.    |.+...-|++||+..
T Consensus       124 ~yCH~-n~IvHRDvkP~nllLASK~~-----------------~A~vKL~~FGvAi~l~~g~~~~G~~GtP~fmaPEvvr  185 (355)
T KOG0033|consen  124 AYCHS-NGIVHRDLKPENLLLASKAK-----------------GAAVKLADFGLAIEVNDGEAWHGFAGTPGYLSPEVLK  185 (355)
T ss_pred             HHHHh-cCceeccCChhheeeeeccC-----------------CCceeecccceEEEeCCccccccccCCCcccCHHHhh
Confidence            99999 99999999999999988753                 457999999999988743    334455689999998


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc-----CHHHH
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN-----SAKEA  432 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d-----sa~el  432 (447)
                      -..+....|||+ .|++++-.+.|..||+...-.+...++..+.-.++.  .+.++++++||+++||..|     ||.|+
T Consensus       186 kdpy~kpvDiW~-cGViLfiLL~G~~PF~~~~~~rlye~I~~g~yd~~~~~w~~is~~Ak~LvrrML~~dP~kRIta~EA  264 (355)
T KOG0033|consen  186 KDPYSKPVDIWA-CGVILYILLVGYPPFWDEDQHRLYEQIKAGAYDYPSPEWDTVTPEAKSLIRRMLTVNPKKRITADEA  264 (355)
T ss_pred             cCCCCCcchhhh-hhHHHHHHHhCCCCCCCccHHHHHHHHhccccCCCCcccCcCCHHHHHHHHHHhccChhhhccHHHH
Confidence            888888889999 999999999999999986666666666655555554  5679999999999999999     99999


Q ss_pred             HcCCCCCC
Q 013230          433 IFDPFFSD  440 (447)
Q Consensus       433 L~HPff~~  440 (447)
                      |+|||+.+
T Consensus       265 L~HpWi~~  272 (355)
T KOG0033|consen  265 LKHPWICN  272 (355)
T ss_pred             hCCchhcc
Confidence            99999975

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=5.9e-37  Score=309.88  Aligned_cols=242  Identities=21%  Similarity=0.304  Sum_probs=204.4

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhcc-ccccCCCCCCCccccee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN-HLRRNEGDTLNACTTFV  206 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~n~~~~iv  206 (447)
                      |++.+.||+|.||.||+|+.      +|+|++.+...     ......+.+.+|+.||++|. |        ||    ||
T Consensus        37 Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~-----~~~~~~~~v~~Ev~il~~l~~h--------pn----iv   99 (382)
T KOG0032|consen   37 YELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKL-----RGKEDREDVRREVAILQQLSGH--------PN----IV   99 (382)
T ss_pred             EEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhc-----cccccHHHHHHHHHHHHhccCC--------CC----EE
Confidence            48889999999999999973      99999987643     22224568999999999998 6        77    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGL  283 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL  283 (447)
                      .++++|..                              .+.+|+|||+|.|| .|.+.+.   +++..+..+++||+.|+
T Consensus       100 ~l~~~~e~------------------------------~~~~~lvmEL~~GG-eLfd~i~~~~~sE~da~~~~~~il~av  148 (382)
T KOG0032|consen  100 QLKDAFED------------------------------PDSVYLVMELCEGG-ELFDRIVKKHYSERDAAGIIRQILEAV  148 (382)
T ss_pred             EEEEEEEc------------------------------CCeEEEEEEecCCc-hHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            99999653                              66799999999999 6666554   89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDPELFS  359 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~pelf~  359 (447)
                      +|||+ +||+||||||||+|+......                ...+|++|||+|......    +++....|++||+..
T Consensus       149 ~~lH~-~gvvHrDlKpEN~L~~~~~~~----------------~~~ik~~DFGla~~~~~~~~~~~~~Gtp~y~APEvl~  211 (382)
T KOG0032|consen  149 KYLHS-LGVVHRDLKPENLLLASKDEG----------------SGRIKLIDFGLAKFIKPGERLHTIVGTPEYVAPEVLG  211 (382)
T ss_pred             HHHHh-CCceeccCCHHHeeeccccCC----------------CCcEEEeeCCCceEccCCceEeeecCCccccCchhhc
Confidence            99999 999999999999999887410                126999999999998773    334556699999999


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc-----CHHHH
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN-----SAKEA  432 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d-----sa~el  432 (447)
                      +..+....|+|+ +|++++.+..|..||+..........++..+..|+.  +..++..++|||++||..|     ||.++
T Consensus       212 ~~~y~~~~DiWS-~Gvi~yiLL~G~~PF~~~~~~~~~~~i~~~~~~f~~~~w~~is~~akd~i~~ll~~dp~~R~ta~~~  290 (382)
T KOG0032|consen  212 GRPYGDEVDVWS-IGVILYILLSGVPPFWGETEFEIFLAILRGDFDFTSEPWDDISESAKDFIRKLLEFDPRKRLTAAQA  290 (382)
T ss_pred             CCCCCcccchhH-HHHHHHHHhhCCCCCcCCChhHHHHHHHcCCCCCCCCCccccCHHHHHHHHHhcccCcccCCCHHHH
Confidence            888888899999 999999999999999987665555666655555543  5678999999999999999     99999


Q ss_pred             HcCCCCCCC
Q 013230          433 IFDPFFSDL  441 (447)
Q Consensus       433 L~HPff~~~  441 (447)
                      |+|||++..
T Consensus       291 L~HpWi~~~  299 (382)
T KOG0032|consen  291 LQHPWIKSI  299 (382)
T ss_pred             hcCccccCC
Confidence            999999975

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-37  Score=316.61  Aligned_cols=242  Identities=21%  Similarity=0.242  Sum_probs=204.7

Q ss_pred             CCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccce
Q 013230          132 SDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~i  205 (447)
                      .+|.++++||+|+||+|++|..      +|||++++...     ......+..+.|.+|+...+.           ||.+
T Consensus       368 ~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~I-----l~~d~Ve~~~~EkrI~~la~~-----------HPFL  431 (694)
T KOG0694|consen  368 DDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDI-----LQRDEVESLMCEKRIFELANR-----------HPFL  431 (694)
T ss_pred             cceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccce-----eccccHHHHHHHHHHHHHhcc-----------CCeE
Confidence            4569999999999999999972      99999987754     233345778999999988762           4459


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAG  282 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~g  282 (447)
                      +.++..                              +.+++++|+||||+.|| |+..++.   |++..++.|+..|+.|
T Consensus       432 ~~L~~~------------------------------fQT~~~l~fvmey~~Gg-dm~~~~~~~~F~e~rarfyaAev~l~  480 (694)
T KOG0694|consen  432 VNLFSC------------------------------FQTKEHLFFVMEYVAGG-DLMHHIHTDVFSEPRARFYAAEVVLG  480 (694)
T ss_pred             eecccc------------------------------cccCCeEEEEEEecCCC-cEEEEEecccccHHHHHHHHHHHHHH
Confidence            999988                              45689999999999999 8766665   9999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE---EE--EecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI---FF--LDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~---i~--~~~~~~pel  357 (447)
                      |+|||+ +|||+||||.+|||||.+|                    ++||+|||+++.....|.   .+  +.-|++||+
T Consensus       481 L~fLH~-~~IIYRDlKLdNiLLD~eG--------------------h~kiADFGlcKe~m~~g~~TsTfCGTpey~aPEi  539 (694)
T KOG0694|consen  481 LQFLHE-NGIIYRDLKLDNLLLDTEG--------------------HVKIADFGLCKEGMGQGDRTSTFCGTPEFLAPEV  539 (694)
T ss_pred             HHHHHh-cCceeeecchhheEEcccC--------------------cEEecccccccccCCCCCccccccCChhhcChhh
Confidence            999999 9999999999999999999                    899999999998764443   22  233899999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----------
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----------  427 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----------  427 (447)
                      ..+..+...+|.|+ +|+..++|+.|..||....-......++.....+|  ..+|.|+.+++++||.+|          
T Consensus       540 l~e~~Yt~aVDWW~-lGVLlyeML~Gq~PF~gddEee~FdsI~~d~~~yP--~~ls~ea~~il~~ll~k~p~kRLG~~e~  616 (694)
T KOG0694|consen  540 LTEQSYTRAVDWWG-LGVLLYEMLVGESPFPGDDEEEVFDSIVNDEVRYP--RFLSKEAIAIMRRLLRKNPEKRLGSGER  616 (694)
T ss_pred             hccCcccchhhHHH-HHHHHHHHHcCCCCCCCCCHHHHHHHHhcCCCCCC--CcccHHHHHHHHHHhccCcccccCCCCC
Confidence            99999999999999 99999999999999986555555556665445555  468999999999999999          


Q ss_pred             CHHHHHcCCCCCCCCCC
Q 013230          428 SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       428 sa~elL~HPff~~~~~~  444 (447)
                      .|+++.+||||+.+.++
T Consensus       617 d~~~i~~hpFFr~i~w~  633 (694)
T KOG0694|consen  617 DAEDIKKHPFFRSIDWD  633 (694)
T ss_pred             CchhhhhCCccccCCHH
Confidence            49999999999988653

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=8.2e-37  Score=313.64  Aligned_cols=243  Identities=20%  Similarity=0.251  Sum_probs=180.3

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||+|.+|.+      ||||+|+.+         ..+..+...|+.||..|+.  +...+    --+||+
T Consensus       188 Y~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~---------k~f~~Q~~~Ei~iL~~ln~--~d~~~----~~n~Vr  252 (586)
T KOG0667|consen  188 YEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNK---------KRFLRQAQIEIRILELLNK--HDPDD----KYNIVR  252 (586)
T ss_pred             EEEEEEecccccceeEEEEecCCCcEEEEEeeccC---------hHHHHHHHHHHHHHHHHhc--cCCCC----CeeEEE
Confidence            59999999999999999974      999999844         3466788999999999983  11112    234999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      ++|+|+.                              .+++|||+|++.  .+|+++++      |+...++.|+.||+.
T Consensus       253 m~d~F~f------------------------------r~HlciVfELL~--~NLYellK~n~f~Glsl~~ir~~~~Qil~  300 (586)
T KOG0667|consen  253 MLDYFYF------------------------------RNHLCIVFELLS--TNLYELLKNNKFRGLSLPLVRKFAQQILT  300 (586)
T ss_pred             eeecccc------------------------------ccceeeeehhhh--hhHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence            9999776                              678999999997  89999998      899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----------------
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----------------  344 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----------------  344 (447)
                      ||.+||+ .||||+|||||||||...+.                  ..|||+|||+|+.....                 
T Consensus       301 ~L~~L~~-l~IIHcDLKPENILL~~~~r------------------~~vKVIDFGSSc~~~q~vytYiQSRfYRAPEVIL  361 (586)
T KOG0667|consen  301 ALLFLHE-LGIIHCDLKPENILLKDPKR------------------SRIKVIDFGSSCFESQRVYTYIQSRFYRAPEVIL  361 (586)
T ss_pred             HHHHHHh-CCeeeccCChhheeeccCCc------------------CceeEEecccccccCCcceeeeeccccccchhhc
Confidence            9999999 99999999999999988763                  27999999999886654                 


Q ss_pred             -------------CEEEEecCCCCCCCCCCCCCchH-HHHHhhccCCcccccCC------------CCCChhHHH-----
Q 013230          345 -------------DIFFLDLSQDPELFSGPKGDKQF-DTYRKMKKVTEDQWEGS------------FPKTNVLWL-----  393 (447)
Q Consensus       345 -------------g~i~~~~~~~pelf~g~~~~~~~-di~s~lg~~~~~~~~~~------------~p~~~~~~~-----  393 (447)
                                   |||.+||++|-++|+|..+.+|+ -|...+|.+...++...            .|.....+.     
T Consensus       362 GlpY~~~IDmWSLGCIlAEL~tG~PLfpG~ne~DQl~~I~e~lG~Pp~~mL~~~~~~~kff~~~~~~~~~~~~~~~~~~~  441 (586)
T KOG0667|consen  362 GLPYDTAIDMWSLGCILAELFTGEPLFPGDNEYDQLARIIEVLGLPPPKMLDTAKKAHKFFTSLKGFPRLCVETSAPRGT  441 (586)
T ss_pred             cCCCCCccceeehhhhHHhHhcCccccCCCCHHHHHHHHHHHhCCCCHHHHHhccccceehhccCCceeeeeeecccccc
Confidence                         66666666666666666666666 56666666543333221            111000000     


Q ss_pred             -----HHHHHHHhhccCCC-C--------CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCC
Q 013230          394 -----VYLVDMLLLKKTFD-R--------SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       394 -----~~~~~~l~~~~~~~-~--------~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~  442 (447)
                           .........+...| .        .......+.|||++||.+|     |+.|+|+||||+...
T Consensus       442 k~~~~~~~~~~~~~~~~~P~~~~~l~~~~~~~~~~~F~dflk~~L~~dP~~R~tp~qal~Hpfl~~~~  509 (586)
T KOG0667|consen  442 KSPEVRKYYRKARLERRGPPGSRSLESGLPKADDKLFIDFLKRCLEWDPAERITPAQALNHPFLTGTS  509 (586)
T ss_pred             cchhhhhhhhhhcccccCCCCCcccchhcccccHHHHHHHHHHHhccCchhcCCHHHHhcCccccccc
Confidence                 00001111111122 1        1144678999999999999     999999999999543

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=1.3e-36  Score=307.66  Aligned_cols=240  Identities=19%  Similarity=0.204  Sum_probs=192.1

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||+||+|++      +|+|++.....     ........+.+|+.++..++|        +|    |+
T Consensus         2 ~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~E~~il~~~~~--------~~----iv   64 (363)
T cd05628           2 DFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADM-----LEKEQVGHIRAERDILVEADS--------LW----VV   64 (363)
T ss_pred             CceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHH-----HHhhHHHHHHHHHHHHHhCCC--------CC----cc
Confidence            579999999999999999973      99999875321     122234567889999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++.+..                              ...+|+|||||.|| +|.+++.    +++..++.++.||+.|
T Consensus        65 ~~~~~~~~------------------------------~~~~~lv~E~~~gg-~L~~~l~~~~~l~~~~~~~~~~qi~~a  113 (363)
T cd05628          65 KMFYSFQD------------------------------KLNLYLIMEFLPGG-DMMTLLMKKDTLTEEETQFYIAETVLA  113 (363)
T ss_pred             eEEEEEec------------------------------CCeEEEEEcCCCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            99988543                              56799999999988 9998875    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------------------
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------------------  344 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------------------  344 (447)
                      |+|||+ +||+||||||+|||++.++                    .+||+|||+|+.....                  
T Consensus       114 L~~lH~-~givHrDlKp~NILi~~~~--------------------~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~  172 (363)
T cd05628         114 IDSIHQ-LGFIHRDIKPDNLLLDSKG--------------------HVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFT  172 (363)
T ss_pred             HHHHHh-CCeEecCCCHHHeEECCCC--------------------CEEEeeccCccccccccccccccccccccccccc
Confidence            999999 9999999999999999887                    7999999998754211                  


Q ss_pred             ----------------------CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh
Q 013230          345 ----------------------DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL  402 (447)
Q Consensus       345 ----------------------g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~  402 (447)
                                            +.+....|++||++.+...+...|+|+ +|++.+++..|..||...........+...
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwS-lGvil~ell~G~~Pf~~~~~~~~~~~i~~~  251 (363)
T cd05628         173 FQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWS-LGVIMYEMLIGYPPFCSETPQETYKKVMNW  251 (363)
T ss_pred             ccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhh-hHHHHHHHHhCCCCCCCCCHHHHHHHHHcC
Confidence                                  112334589999998877778889999 999999999999999765443333333321


Q ss_pred             c--cCCCCCccchHHHHHHHHHhcccc-------CHHHHHcCCCCCCCC
Q 013230          403 K--KTFDRSSKDERDLRSLKKRLDKYN-------SAKEAIFDPFFSDLI  442 (447)
Q Consensus       403 ~--~~~~~~~~~s~~l~dLl~~mL~~d-------sa~elL~HPff~~~~  442 (447)
                      .  ..+|....++++++|||.+||...       +++|+++||||++..
T Consensus       252 ~~~~~~p~~~~~s~~~~~li~~l~~~~~~r~~r~~~~ei~~hp~f~~~~  300 (363)
T cd05628         252 KETLIFPPEVPISEKAKDLILRFCCEWEHRIGAPGVEEIKTNPFFEGVD  300 (363)
T ss_pred             cCcccCCCcCCCCHHHHHHHHHHcCChhhcCCCCCHHHHhCCCCCCCCC
Confidence            1  234443457899999999987632       799999999999764

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.7e-36  Score=297.39  Aligned_cols=238  Identities=19%  Similarity=0.213  Sum_probs=193.9

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|++      +|+|++.....     ...+..+.+.+|+.+++.++|        ||    |+
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~E~~~l~~l~h--------p~----iv   64 (291)
T cd05612           2 DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEV-----IRLKQEQHVHNEKRVLKEVSH--------PF----II   64 (291)
T ss_pred             CceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHH-----hhhHHHHHHHHHHHHHHhCCC--------Cc----Hh
Confidence            469999999999999999973      99999875421     122234567899999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++                              .+++.+|+||||+.+| +|.+++.    +++..++.++.||+.|
T Consensus        65 ~~~~~~------------------------------~~~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~qi~~~  113 (291)
T cd05612          65 RLFWTE------------------------------HDQRFLYMLMEYVPGG-ELFSYLRNSGRFSNSTGLFYASEIVCA  113 (291)
T ss_pred             hhHhhh------------------------------ccCCeEEEEEeCCCCC-CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            998873                              2356799999999988 9998876    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE--EEEecCCCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI--FFLDLSQDPELFSG  360 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~--i~~~~~~~pelf~g  360 (447)
                      |+|||+ +||+||||||+|||++.++                    .+||+|||+++.......  .....|++||.+.+
T Consensus       114 l~~lH~-~~i~H~dlkp~NIli~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~  172 (291)
T cd05612         114 LEYLHS-KEIVYRDLKPENILLDKEG--------------------HIKLTDFGFAKKLRDRTWTLCGTPEYLAPEVIQS  172 (291)
T ss_pred             HHHHHH-CCeeecCCCHHHeEECCCC--------------------CEEEEecCcchhccCCcccccCChhhcCHHHHcC
Confidence            999999 9999999999999999887                    799999999987654321  22345899999988


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----------CHH
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----------SAK  430 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----------sa~  430 (447)
                      ...+.+.|||+ +|.+.++++.|..|+...........+....  ...+...++.+++||++||+.|          +++
T Consensus       173 ~~~~~~~DiwS-lG~il~~l~~g~~pf~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~  249 (291)
T cd05612         173 KGHNKAVDWWA-LGILIYEMLVGYPPFFDDNPFGIYEKILAGK--LEFPRHLDLYAKDLIKKLLVVDRTRRLGNMKNGAD  249 (291)
T ss_pred             CCCCchhhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHhCC--cCCCccCCHHHHHHHHHHcCCCHHHccCCccCCHH
Confidence            77777789999 9999999999999987654434344444322  3334567899999999999999          399


Q ss_pred             HHHcCCCCCCCC
Q 013230          431 EAIFDPFFSDLI  442 (447)
Q Consensus       431 elL~HPff~~~~  442 (447)
                      |+++||||+.+.
T Consensus       250 ~~l~h~~~~~~~  261 (291)
T cd05612         250 DVKNHRWFKSVD  261 (291)
T ss_pred             HHhcCccccCCC
Confidence            999999998753

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=3.3e-36  Score=302.43  Aligned_cols=239  Identities=18%  Similarity=0.193  Sum_probs=195.2

Q ss_pred             CCCcceEEeccccceEEEEec-------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          132 SDPENIVKVGEGTFGEAFLAG-------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~-------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      .+|++++.||+|+||.||+|+       .||+|++.....     ......+.+.+|+.+++.++|        ||    
T Consensus        30 ~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~-----~~~~~~~~~~~E~~~l~~l~h--------p~----   92 (340)
T PTZ00426         30 EDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKI-----IKQKQVDHVFSERKILNYINH--------PF----   92 (340)
T ss_pred             hhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHh-----hhhhhHHHHHHHHHHHHhCCC--------CC----
Confidence            345999999999999999996       389998864321     122344678899999999998        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVT  280 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil  280 (447)
                      |+++++++..                              ++.+|+||||+.|| +|.+++.    +++..++.++.||+
T Consensus        93 Iv~~~~~~~~------------------------------~~~~~lv~Ey~~~g-~L~~~i~~~~~~~~~~~~~~~~qi~  141 (340)
T PTZ00426         93 CVNLYGSFKD------------------------------ESYLYLVLEFVIGG-EFFTFLRRNKRFPNDVGCFYAAQIV  141 (340)
T ss_pred             CcceEEEEEe------------------------------CCEEEEEEeCCCCC-cHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            9999998643                              56799999999988 9998886    89999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE--EEEecCCCCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI--FFLDLSQDPELF  358 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~--i~~~~~~~pelf  358 (447)
                      .||.|||+ .||+||||||+|||++.++                    .+||+|||+|+.......  .....|++||.+
T Consensus       142 ~aL~~LH~-~~ivHrDLkp~NILl~~~~--------------------~ikL~DFG~a~~~~~~~~~~~gt~~y~aPE~~  200 (340)
T PTZ00426        142 LIFEYLQS-LNIVYRDLKPENLLLDKDG--------------------FIKMTDFGFAKVVDTRTYTLCGTPEYIAPEIL  200 (340)
T ss_pred             HHHHHHHH-CCeEccCCCHHHEEECCCC--------------------CEEEecCCCCeecCCCcceecCChhhcCHHHH
Confidence            99999999 9999999999999999887                    799999999987654322  223448999999


Q ss_pred             CCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----------C
Q 013230          359 SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----------S  428 (447)
Q Consensus       359 ~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----------s  428 (447)
                      .+.......|+|+ +|++.+++++|..|+...........+..  .....+...++++++||++||+.|          |
T Consensus       201 ~~~~~~~~~DiwS-lGvil~ell~G~~Pf~~~~~~~~~~~i~~--~~~~~p~~~~~~~~~li~~~l~~dp~~R~~~~~~~  277 (340)
T PTZ00426        201 LNVGHGKAADWWT-LGIFIYEILVGCPPFYANEPLLIYQKILE--GIIYFPKFLDNNCKHLMKKLLSHDLTKRYGNLKKG  277 (340)
T ss_pred             hCCCCCccccccc-hhhHHHHHhcCCCCCCCCCHHHHHHHHhc--CCCCCCCCCCHHHHHHHHHHcccCHHHcCCCCCCC
Confidence            8877777789999 99999999999999976543333333332  223334568899999999999998          7


Q ss_pred             HHHHHcCCCCCCCC
Q 013230          429 AKEAIFDPFFSDLI  442 (447)
Q Consensus       429 a~elL~HPff~~~~  442 (447)
                      ++++++||||+++.
T Consensus       278 ~~~~~~hp~f~~~~  291 (340)
T PTZ00426        278 AQNVKEHPWFGNID  291 (340)
T ss_pred             HHHHHcCCCcCCCC
Confidence            99999999999764

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=2e-36  Score=302.32  Aligned_cols=237  Identities=19%  Similarity=0.181  Sum_probs=195.0

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||+|+||.||+|++      ||+|++.....     ......+.+.+|+.+++.++|        ||    |+
T Consensus        19 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~E~~~l~~l~h--------p~----iv   81 (329)
T PTZ00263         19 DFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREI-----LKMKQVQHVAQEKSILMELSH--------PF----IV   81 (329)
T ss_pred             heEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHH-----hhhhhHHHHHHHHHHHHhCCC--------CC----CC
Confidence            459999999999999999973      99999874321     122334678899999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              ++.+|+||||+.|| +|.+++.    +++..++.++.||+.|
T Consensus        82 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~qi~~a  130 (329)
T PTZ00263         82 NMMCSFQD------------------------------ENRVYFLLEFVVGG-ELFTHLRKAGRFPNDVAKFYHAELVLA  130 (329)
T ss_pred             cEEEEEEc------------------------------CCEEEEEEcCCCCC-hHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            99998543                              56799999999988 9988875    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE--EEecCCCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF--FLDLSQDPELFSG  360 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i--~~~~~~~pelf~g  360 (447)
                      |+|||+ +||+||||||+|||++.++                    .+||+|||+++........  ....|++||.+.+
T Consensus       131 L~~LH~-~~ivH~dlkp~NIll~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~  189 (329)
T PTZ00263        131 FEYLHS-KDIIYRDLKPENLLLDNKG--------------------HVKVTDFGFAKKVPDRTFTLCGTPEYLAPEVIQS  189 (329)
T ss_pred             HHHHHH-CCeeecCCCHHHEEECCCC--------------------CEEEeeccCceEcCCCcceecCChhhcCHHHHcC
Confidence            999999 9999999999999999987                    7999999999876554322  2234899999988


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C-----HH
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S-----AK  430 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s-----a~  430 (447)
                      ...+.+.|+|+ +|++.++++.|..|+.+.........+..  ..++.+..++.++++||++||+.|     +     ++
T Consensus       190 ~~~~~~~Diws-lG~il~elltg~~pf~~~~~~~~~~~i~~--~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~  266 (329)
T PTZ00263        190 KGHGKAVDWWT-MGVLLYEFIAGYPPFFDDTPFRIYEKILA--GRLKFPNWFDGRARDLVKGLLQTDHTKRLGTLKGGVA  266 (329)
T ss_pred             CCCCCcceeec-hHHHHHHHHcCCCCCCCCCHHHHHHHHhc--CCcCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHH
Confidence            77777789999 99999999999999976544443444432  334444568899999999999999     3     79


Q ss_pred             HHHcCCCCCCC
Q 013230          431 EAIFDPFFSDL  441 (447)
Q Consensus       431 elL~HPff~~~  441 (447)
                      ++++||||++.
T Consensus       267 ~ll~hp~f~~~  277 (329)
T PTZ00263        267 DVKNHPYFHGA  277 (329)
T ss_pred             HHhcCCccCCC
Confidence            99999999874

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=5.8e-36  Score=298.12  Aligned_cols=233  Identities=19%  Similarity=0.212  Sum_probs=190.0

Q ss_pred             EEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeE
Q 013230          138 VKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEI  211 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~  211 (447)
                      +.||+|+||.||+|++      +|+|++.....     ........+.+|+.+++.++|        ||    |++++++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~e~~~l~~l~h--------p~----i~~~~~~   63 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVI-----IAKDEVAHTLTESRVLQNTRH--------PF----LTALKYS   63 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHh-----hhhHHHHHHHHHHHHHHhCCC--------CC----CCCEEEE
Confidence            4699999999999973      99999875321     122234567899999999988        88    9999888


Q ss_pred             EEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHHH
Q 013230          212 KVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVAE  287 (447)
Q Consensus       212 ~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~ylH  287 (447)
                      +..                              .+.+|+||||+.+| +|..++.    +++..++.++.||+.||+|||
T Consensus        64 ~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH  112 (323)
T cd05571          64 FQT------------------------------HDRLCFVMEYANGG-ELFFHLSRERVFSEDRARFYGAEIVSALGYLH  112 (323)
T ss_pred             EEc------------------------------CCEEEEEEeCCCCC-cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            543                              56799999999988 8988775    899999999999999999999


Q ss_pred             HhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCCCCCCC
Q 013230          288 AAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPELFSGPK  362 (447)
Q Consensus       288 ~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pelf~g~~  362 (447)
                      + +||+||||||+|||++.++                    .+||+|||+|+.....+     ......|++||.+.+..
T Consensus       113 ~-~~ivHrDlkp~NIll~~~~--------------------~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  171 (323)
T cd05571         113 S-CDVVYRDLKLENLMLDKDG--------------------HIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDND  171 (323)
T ss_pred             h-CCeEeCCCCHHHEEECCCC--------------------CEEEeeCCCCcccccCCCcccceecCccccChhhhcCCC
Confidence            9 9999999999999999887                    79999999998643221     22344589999998877


Q ss_pred             CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----------CHHHH
Q 013230          363 GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----------SAKEA  432 (447)
Q Consensus       363 ~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----------sa~el  432 (447)
                      ...+.|+|+ +|++.++++.|..|+...........+...  ....+..+++++++||++||..|          ++.++
T Consensus       172 ~~~~~DiwS-lG~il~elltg~~Pf~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~l  248 (323)
T cd05571         172 YGRAVDWWG-LGVVMYEMMCGRLPFYNQDHEKLFELILME--EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPEDAKEI  248 (323)
T ss_pred             CCccccCcc-cchhhhhhhcCCCCCCCCCHHHHHHHHHcC--CCCCCCCCCHHHHHHHHHHccCCHHHcCCCCCCCHHHH
Confidence            788889999 999999999999999765554444444432  33344678999999999999999          59999


Q ss_pred             HcCCCCCCCC
Q 013230          433 IFDPFFSDLI  442 (447)
Q Consensus       433 L~HPff~~~~  442 (447)
                      ++||||+.+.
T Consensus       249 l~h~~f~~~~  258 (323)
T cd05571         249 MEHRFFASIN  258 (323)
T ss_pred             HcCCCcCCCC
Confidence            9999998753

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.5e-37  Score=286.13  Aligned_cols=246  Identities=19%  Similarity=0.226  Sum_probs=197.1

Q ss_pred             CCCcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccce
Q 013230          132 SDPENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~i  205 (447)
                      ..|+.-+.||.|..+.|.+|.      .+|+|++................+...+|+.||+++..           ||+|
T Consensus        17 ~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~G-----------HP~I   85 (411)
T KOG0599|consen   17 AKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMG-----------HPYI   85 (411)
T ss_pred             hhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcC-----------CCcE
Confidence            334888999999999999886      38889887654322222233345777899999999865           5559


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTA  281 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~  281 (447)
                      |++.|+|.                              ++..+++|+|+|..| .|.+++.    +++..++.|++|++.
T Consensus        86 I~l~D~ye------------------------------s~sF~FlVFdl~prG-ELFDyLts~VtlSEK~tR~iMrqlfe  134 (411)
T KOG0599|consen   86 IDLQDVYE------------------------------SDAFVFLVFDLMPRG-ELFDYLTSKVTLSEKETRRIMRQLFE  134 (411)
T ss_pred             EEeeeecc------------------------------Ccchhhhhhhhcccc-hHHHHhhhheeecHHHHHHHHHHHHH
Confidence            99999953                              467799999999999 9999987    999999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPEL  357 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pel  357 (447)
                      |+.|||. .+||||||||||||++.+-                    ++||+|||+|+....+.    .....-|.+||.
T Consensus       135 gVeylHa-~~IVHRDLKpENILlddn~--------------------~i~isDFGFa~~l~~GekLrelCGTPgYLAPEt  193 (411)
T KOG0599|consen  135 GVEYLHA-RNIVHRDLKPENILLDDNM--------------------NIKISDFGFACQLEPGEKLRELCGTPGYLAPET  193 (411)
T ss_pred             HHHHHHH-hhhhhcccChhheeecccc--------------------ceEEeccceeeccCCchhHHHhcCCCcccChhh
Confidence            9999999 9999999999999999997                    79999999999876651    112334667776


Q ss_pred             CC-----CC-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc--
Q 013230          358 FS-----GP-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       358 f~-----g~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d--  427 (447)
                      ..     +. .+....|+|+ +|++.+..+.|..||+...-+-.+.-+.-++-.|..  +..+|.+.+|||.+||+.|  
T Consensus       194 ikC~m~e~~pGYs~EVD~Wa-~GVImyTLLaGcpPFwHRkQmlMLR~ImeGkyqF~speWadis~~~KdLIsrlLqVdp~  272 (411)
T KOG0599|consen  194 IKCSMYENHPGYSKEVDEWA-CGVIMYTLLAGCPPFWHRKQMLMLRMIMEGKYQFRSPEWADISATVKDLISRLLQVDPT  272 (411)
T ss_pred             eeeecccCCCCccchhhHHH-HHHHHHHHHcCCCchhHHHHHHHHHHHHhcccccCCcchhhccccHHHHHHHHHeeCch
Confidence            53     22 2334459999 999999999999999987665566666655545544  4578999999999999999  


Q ss_pred             ---CHHHHHcCCCCCCC
Q 013230          428 ---SAKEAIFDPFFSDL  441 (447)
Q Consensus       428 ---sa~elL~HPff~~~  441 (447)
                         |++|+|+||||..+
T Consensus       273 ~Ritake~LaHpff~q~  289 (411)
T KOG0599|consen  273 KRITAKEALAHPFFIQI  289 (411)
T ss_pred             hcccHHHHhcChHHHHH
Confidence               99999999999654

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=4.9e-36  Score=305.55  Aligned_cols=240  Identities=18%  Similarity=0.159  Sum_probs=190.9

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|++++.||+|+||+||+|++      +|+|++.....     ........+.+|+.+++.++|        +|    |+
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~-----~~~~~~~~~~~E~~il~~l~h--------~~----iv   64 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDV-----LNRNQVAHVKAERDILAEADN--------EW----VV   64 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHh-----hhhHHHHHHHHHHHHHHhcCC--------CC----ee
Confidence            368999999999999999973      99999875432     122334678899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              .+.+|+||||+.|| +|.+++.    +++..++.++.||+.|
T Consensus        65 ~l~~~~~~------------------------------~~~~~lv~E~~~gg-~L~~~l~~~~~~~e~~~~~~~~qi~~a  113 (381)
T cd05626          65 KLYYSFQD------------------------------KDNLYFVMDYIPGG-DMMSLLIRMEVFPEVLARFYIAELTLA  113 (381)
T ss_pred             eeEEEEec------------------------------CCEEEEEEecCCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            99998543                              56799999999988 9988875    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------------------
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------------------  344 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------------------  344 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+++.....                  
T Consensus       114 L~~LH~-~givHrDlKp~Nili~~~~--------------------~~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~~~  172 (381)
T cd05626         114 IESVHK-MGFIHRDIKPDNILIDLDG--------------------HIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSME  172 (381)
T ss_pred             HHHHHh-CCeeecCCcHHHEEECCCC--------------------CEEEeeCcCCcccccccccccccccccccccccC
Confidence            999999 9999999999999999887                    7999999997532100                  


Q ss_pred             ----------------------------------CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChh
Q 013230          345 ----------------------------------DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV  390 (447)
Q Consensus       345 ----------------------------------g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~  390 (447)
                                                        ..+....|++||++.+...+...|||+ +|++.+++..|..||...
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwS-lG~il~elltG~~Pf~~~  251 (381)
T cd05626         173 PSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWS-VGVILFEMLVGQPPFLAP  251 (381)
T ss_pred             cccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceee-hhhHHHHHHhCCCCCcCC
Confidence                                              012234589999998877777789999 999999999999998654


Q ss_pred             HHHHHHHHHHhhc--cCCCCCccchHHHHHHHHHhcccc-------CHHHHHcCCCCCCCC
Q 013230          391 LWLVYLVDMLLLK--KTFDRSSKDERDLRSLKKRLDKYN-------SAKEAIFDPFFSDLI  442 (447)
Q Consensus       391 ~~~~~~~~~l~~~--~~~~~~~~~s~~l~dLl~~mL~~d-------sa~elL~HPff~~~~  442 (447)
                      ........+....  ..++....++++++|||++||..+       |++|+++||||++..
T Consensus       252 ~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~ll~~~~~~~~R~~~~~~l~hp~f~~~~  312 (381)
T cd05626         252 TPTETQLKVINWENTLHIPPQVKLSPEAVDLITKLCCSAEERLGRNGADDIKAHPFFSEVD  312 (381)
T ss_pred             CHHHHHHHHHccccccCCCCCCCCCHHHHHHHHHHccCcccccCCCCHHHHhcCcccCCCC
Confidence            3333333333211  234444468999999999987654       899999999998753

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.8e-36  Score=305.00  Aligned_cols=240  Identities=18%  Similarity=0.191  Sum_probs=190.2

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+++++||+|+||.||+|++      ||+|++.....     ........+.+|+.+++.++|        ||    |+
T Consensus         2 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~E~~il~~l~h--------p~----iv   64 (377)
T cd05629           2 DFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEM-----FKKDQLAHVKAERDVLAESDS--------PW----VV   64 (377)
T ss_pred             CceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHH-----HHhHHHHHHHHHHHHHHhCCC--------CC----cc
Confidence            569999999999999999973      99998864321     122234667889999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      +++++|..                              .+.+|+||||+.|| +|.+++.    +++..++.++.|++.|
T Consensus        65 ~~~~~~~~------------------------------~~~~~lv~E~~~gg-~L~~~l~~~~~~~~~~~~~~~~ql~~a  113 (377)
T cd05629          65 SLYYSFQD------------------------------AQYLYLIMEFLPGG-DLMTMLIKYDTFSEDVTRFYMAECVLA  113 (377)
T ss_pred             eEEEEEEc------------------------------CCeeEEEEeCCCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            99998543                              56799999999988 9998875    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------------------
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------------------  344 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------------------  344 (447)
                      |+|||+ +||+||||||+|||++.++                    .+||+|||+|+.....                  
T Consensus       114 L~~LH~-~givHrDlkp~NIll~~~~--------------------~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~~~  172 (377)
T cd05629         114 IEAVHK-LGFIHRDIKPDNILIDRGG--------------------HIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNR  172 (377)
T ss_pred             HHHHHh-CCeeccCCCHHHEEECCCC--------------------CEEEeecccccccccccccccccccccccccccc
Confidence            999999 9999999999999999887                    7999999999632110                  


Q ss_pred             ----------------------------------CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChh
Q 013230          345 ----------------------------------DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV  390 (447)
Q Consensus       345 ----------------------------------g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~  390 (447)
                                                        ..+....|++||++.+.......|||+ +|++.++++.|..||...
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwS-lGvil~elltG~~Pf~~~  251 (377)
T cd05629         173 IDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWS-LGAIMFECLIGWPPFCSE  251 (377)
T ss_pred             cccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEe-cchhhhhhhcCCCCCCCC
Confidence                                              012333489999998877777789999 999999999999998654


Q ss_pred             HHHHHHHHHHhhc--cCCCCCccchHHHHHHHHHhcccc-------CHHHHHcCCCCCCCC
Q 013230          391 LWLVYLVDMLLLK--KTFDRSSKDERDLRSLKKRLDKYN-------SAKEAIFDPFFSDLI  442 (447)
Q Consensus       391 ~~~~~~~~~l~~~--~~~~~~~~~s~~l~dLl~~mL~~d-------sa~elL~HPff~~~~  442 (447)
                      ........+....  ..++....++.+++|||++||...       ||.|+++||||++..
T Consensus       252 ~~~~~~~~i~~~~~~~~~p~~~~~s~~~~dli~~lL~~~~~r~~r~~~~~~l~hp~~~~~~  312 (377)
T cd05629         252 NSHETYRKIINWRETLYFPDDIHLSVEAEDLIRRLITNAENRLGRGGAHEIKSHPFFRGVD  312 (377)
T ss_pred             CHHHHHHHHHccCCccCCCCCCCCCHHHHHHHHHHhcCHhhcCCCCCHHHHhcCCCcCCCC
Confidence            3333333333212  233444457899999999999732       899999999998753

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=2.8e-35  Score=288.17  Aligned_cols=235  Identities=20%  Similarity=0.276  Sum_probs=182.9

Q ss_pred             cCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          131 YSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       131 y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      ..+|+++++||+|+||.||+|++      ||+|++.....       ......+.+|+.+++.++|        ||    
T Consensus         4 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-------~~~~~~~~~E~~~l~~l~h--------~n----   64 (288)
T cd07871           4 LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHE-------EGAPCTAIREVSLLKNLKH--------AN----   64 (288)
T ss_pred             cccceEeeEEecCCCEEEEEEEECCCCCEEEEEEeccccc-------CCcchhHHHHHHHHHhCCC--------CC----
Confidence            34579999999999999999963      99998875421       1223467899999999998        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQV  279 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qi  279 (447)
                      |+++++++.                              .++..|+||||+. | +|.+++.     +++..++.++.||
T Consensus        65 iv~~~~~~~------------------------------~~~~~~lv~e~~~-~-~l~~~l~~~~~~~~~~~~~~~~~qi  112 (288)
T cd07871          65 IVTLHDIIH------------------------------TERCLTLVFEYLD-S-DLKQYLDNCGNLMSMHNVKIFMFQL  112 (288)
T ss_pred             EeeEEEEEc------------------------------CCCeEEEEEeCCC-c-CHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            999999853                              2567999999997 5 8888764     7899999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQD  354 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~  354 (447)
                      +.||+|||+ +||+||||||+|||++.++                    .+||+|||+++.....     +......|++
T Consensus       113 ~~aL~~LH~-~~ivH~dlkp~Nil~~~~~--------------------~~kl~DfG~~~~~~~~~~~~~~~~~~~~y~a  171 (288)
T cd07871         113 LRGLSYCHK-RKILHRDLKPQNLLINEKG--------------------ELKLADFGLARAKSVPTKTYSNEVVTLWYRP  171 (288)
T ss_pred             HHHHHHHHh-CCcccCCCCHHHEEECCCC--------------------CEEECcCcceeeccCCCccccCceecccccC
Confidence            999999999 9999999999999999887                    7999999999764322     2234456899


Q ss_pred             CCCCCCC-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh--h-----------------ccCCCC------
Q 013230          355 PELFSGP-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL--L-----------------KKTFDR------  408 (447)
Q Consensus       355 pelf~g~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~--~-----------------~~~~~~------  408 (447)
                      ||++.+. ......|+|+ +|++.+++++|..|+........+..+..  .                 ...++.      
T Consensus       172 PE~~~~~~~~~~~~Diws-lG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (288)
T cd07871         172 PDVLLGSTEYSTPIDMWG-VGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNEEFRSYLFPQYRAQPL  250 (288)
T ss_pred             hHHhcCCcccCcHHHHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhccccchhhhccccCccCCCch
Confidence            9988763 3556679999 89999999999988864322221111110  0                 000110      


Q ss_pred             ---CccchHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          409 ---SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       409 ---~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                         ....+++++|||++||++|     ||+|+|+||||
T Consensus       251 ~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~hp~f  288 (288)
T cd07871         251 INHAPRLDTDGIDLLSSLLLYETKSRISAEAALRHSYF  288 (288)
T ss_pred             HHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcCCCC
Confidence               1246889999999999999     99999999998

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.8e-35  Score=295.58  Aligned_cols=240  Identities=19%  Similarity=0.191  Sum_probs=192.1

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+++++||+|+||.||+|++      ||+|++.....     ........+.+|+.+++.++|        ||    |+
T Consensus         2 ~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~~~~~e~~~l~~~~h--------~~----iv   64 (333)
T cd05600           2 DFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLL-----FKLNEVRHVLTERDILTTTKS--------EW----LV   64 (333)
T ss_pred             CcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHH-----hhhhHHHHHHHHHHHHHhCCC--------CC----Cc
Confidence            469999999999999999973      99999875421     112234568899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              .+.+|+||||+.|| +|.+++.    +++..++.++.||+.|
T Consensus        65 ~~~~~~~~------------------------------~~~~~lv~e~~~g~-~L~~~l~~~~~l~~~~~~~~~~qi~~~  113 (333)
T cd05600          65 KLLYAFQD------------------------------DEYLYLAMEYVPGG-DFRTLLNNLGVLSEDHARFYMAEMFEA  113 (333)
T ss_pred             cEEEEEEc------------------------------CCEEEEEEeCCCCC-CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            99988543                              56799999999988 9999986    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--CEEEEecCCCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--DIFFLDLSQDPELFSG  360 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--g~i~~~~~~~pelf~g  360 (447)
                      |.|||+ +||+||||||+|||++.++                    .+||+|||+|+.....  ..+....|++||.+.+
T Consensus       114 l~~lH~-~~ivH~dlkp~Nil~~~~~--------------------~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~  172 (333)
T cd05600         114 VDALHE-LGYIHRDLKPENFLIDASG--------------------HIKLTDFGLSKGIVTYANSVVGSPDYMAPEVLRG  172 (333)
T ss_pred             HHHHHH-CCccccCCCHHHEEECCCC--------------------CEEEEeCcCCcccccccCCcccCccccChhHhcC
Confidence            999999 9999999999999999887                    7999999999865432  2233445899999988


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCC--CCC----ccchHHHHHHHHHhcccc-----CH
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTF--DRS----SKDERDLRSLKKRLDKYN-----SA  429 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~--~~~----~~~s~~l~dLl~~mL~~d-----sa  429 (447)
                      ...+.+.|+|+ +|++.+++..|..|+..................+  +..    ..++.++++||.+||..+     |+
T Consensus       173 ~~~~~~~Dvws-lG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~~~rr~s~  251 (333)
T cd05600         173 KGYDFTVDYWS-LGCMLYEFLCGFPPFSGSTPNETWENLKYWKETLQRPVYDDPRFNLSDEAWDLITKLINDPSRRFGSL  251 (333)
T ss_pred             CCCCCccceec-chHHHhhhhhCCCCCCCCCHHHHHHHHHhccccccCCCCCccccccCHHHHHHHHHHhhChhhhcCCH
Confidence            87777889999 9999999999999986543333222222111111  111    246899999999999877     99


Q ss_pred             HHHHcCCCCCCCC
Q 013230          430 KEAIFDPFFSDLI  442 (447)
Q Consensus       430 ~elL~HPff~~~~  442 (447)
                      +++++||||++..
T Consensus       252 ~~ll~h~~~~~~~  264 (333)
T cd05600         252 EDIKNHPFFKEVD  264 (333)
T ss_pred             HHHHhCcccCCCC
Confidence            9999999999763

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1e-35  Score=300.82  Aligned_cols=240  Identities=19%  Similarity=0.209  Sum_probs=191.6

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|++      ||+|++.....     ........+.+|+.+++.++|        +|    |+
T Consensus         2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~~~~~E~~il~~l~h--------~~----iv   64 (364)
T cd05599           2 DFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEM-----LEKEQVAHVRAERDILAEADN--------PW----VV   64 (364)
T ss_pred             CceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHh-----hhhhHHHHHHHHHHHHHhCCC--------CC----Cc
Confidence            569999999999999999974      99999875321     112234567889999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      +++++|..                              ++.+|+|||||.|| +|.+++.    +++..++.++.||+.|
T Consensus        65 ~~~~~~~~------------------------------~~~~~lv~E~~~~g-~L~~~l~~~~~l~~~~~~~~~~qi~~a  113 (364)
T cd05599          65 KLYYSFQD------------------------------ENYLYLIMEYLPGG-DMMTLLMKKDTFTEEETRFYIAETILA  113 (364)
T ss_pred             ceEEEEEc------------------------------CCeEEEEECCCCCc-HHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            99988543                              56799999999988 9998875    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----------------
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----------------  345 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----------------  345 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+++......                 
T Consensus       114 L~~lH~-~~ivH~Dlkp~NIl~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (364)
T cd05599         114 IDSIHK-LGYIHRDIKPDNLLLDAKG--------------------HIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFL  172 (364)
T ss_pred             HHHHHH-CCeEeccCCHHHeEECCCC--------------------CEEEeecccceecccccccccccccccccccccc
Confidence            999999 9999999999999999987                    79999999987543210                 


Q ss_pred             --------------------------EEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHH
Q 013230          346 --------------------------IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDM  399 (447)
Q Consensus       346 --------------------------~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~  399 (447)
                                                .+....|++||++.+.......|||+ +|++.++++.|..|+...........+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwS-lG~il~el~~G~~Pf~~~~~~~~~~~i  251 (364)
T cd05599         173 DFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWS-LGVIMYEMLVGYPPFCSDNPQETYRKI  251 (364)
T ss_pred             ccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeec-chhHHHHhhcCCCCCCCCCHHHHHHHH
Confidence                                      11233488999998877777789999 999999999999998765444433333


Q ss_pred             Hhhcc--CCCCCccchHHHHHHHHHhcccc----C---HHHHHcCCCCCCCC
Q 013230          400 LLLKK--TFDRSSKDERDLRSLKKRLDKYN----S---AKEAIFDPFFSDLI  442 (447)
Q Consensus       400 l~~~~--~~~~~~~~s~~l~dLl~~mL~~d----s---a~elL~HPff~~~~  442 (447)
                      +....  .++....+++++++||++||...    +   ++|+++||||+...
T Consensus       252 ~~~~~~~~~~~~~~~s~~~~~li~~ll~~p~~R~~~~~~~~ll~h~~~~~~~  303 (364)
T cd05599         252 INWKETLQFPDEVPLSPEAKDLIKRLCCEAERRLGNNGVNEIKSHPFFKGVD  303 (364)
T ss_pred             HcCCCccCCCCCCCCCHHHHHHHHHHccCHhhcCCCCCHHHHhcCCCcCCCC
Confidence            32222  23333457899999999999722    5   99999999998763

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=2.2e-35  Score=299.90  Aligned_cols=239  Identities=18%  Similarity=0.197  Sum_probs=189.2

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+++++||+|+||.||+|++      ||+|++.....     ........+.+|+.+++.++|        +|    |+
T Consensus         2 ~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~-----~~~~~~~~~~~E~~il~~l~h--------~~----iv   64 (376)
T cd05598           2 MFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADV-----LMRNQAAHVKAERDILAEADN--------EW----VV   64 (376)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHH-----HhhhhHHHHHHHHHHHHhCCC--------CC----cc
Confidence            579999999999999999973      99998864321     122234667899999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++.|..                              ++.+|+|||||.|| +|.+++.    +++..++.++.||+.|
T Consensus        65 ~~~~~~~~------------------------------~~~~~lv~E~~~~g-~L~~~i~~~~~~~~~~~~~~~~qi~~a  113 (376)
T cd05598          65 KLYYSFQD------------------------------KDNLYFVMDYIPGG-DMMSLLIRLGIFEEDLARFYIAELTCA  113 (376)
T ss_pred             eEEEEEEc------------------------------CCEEEEEEeCCCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            99988643                              56799999999988 9999876    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCC-------------------
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG-------------------  343 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~-------------------  343 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+|.....                   
T Consensus       114 l~~lH~-~~ivHrDlkp~Nill~~~~--------------------~ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~  172 (376)
T cd05598         114 IESVHK-MGFIHRDIKPDNILIDRDG--------------------HIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSME  172 (376)
T ss_pred             HHHHHH-CCeEeCCCCHHHEEECCCC--------------------CEEEEeCCCCcccccccccccccccccccccccc
Confidence            999999 9999999999999999887                    799999999752210                   


Q ss_pred             -----------------------------CCEEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHH
Q 013230          344 -----------------------------EDIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLV  394 (447)
Q Consensus       344 -----------------------------~g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~  394 (447)
                                                   .+.+....|++||++.+...+.+.|||+ +|++.++++.|..||.......
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwS-lGvilyell~G~~Pf~~~~~~~  251 (376)
T cd05598         173 PSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWS-VGVILYEMLVGQPPFLADTPAE  251 (376)
T ss_pred             ccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeee-ccceeeehhhCCCCCCCCCHHH
Confidence                                         0112334589999998877777789999 9999999999999987554333


Q ss_pred             HHHHHHhhc--cCCCCCccchHHHHHHHHHhcccc--------CHHHHHcCCCCCCCC
Q 013230          395 YLVDMLLLK--KTFDRSSKDERDLRSLKKRLDKYN--------SAKEAIFDPFFSDLI  442 (447)
Q Consensus       395 ~~~~~l~~~--~~~~~~~~~s~~l~dLl~~mL~~d--------sa~elL~HPff~~~~  442 (447)
                      ....+....  ..++....+++++.+||.+|+. +        |+.|+++||||+.+.
T Consensus       252 ~~~~i~~~~~~~~~~~~~~~s~~~~~li~~l~~-~p~~R~~~~t~~ell~h~~~~~~~  308 (376)
T cd05598         252 TQLKVINWETTLHIPSQAKLSREASDLILRLCC-GAEDRLGKNGADEIKAHPFFKGID  308 (376)
T ss_pred             HHHHHhccCccccCCCCCCCCHHHHHHHHHHhc-CHhhcCCCCCHHHHhCCCCcCCCC
Confidence            222222211  1233344689999999999874 5        699999999998753

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.7e-35  Score=293.15  Aligned_cols=230  Identities=20%  Similarity=0.246  Sum_probs=187.9

Q ss_pred             eccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEEE
Q 013230          140 VGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKV  213 (447)
Q Consensus       140 LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~~  213 (447)
                      ||+|+||.||+|++      ||+|++.....     ........+.+|+.+++.++|        ||    |+++++++.
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~-----~~~~~~~~~~~E~~~l~~l~h--------~~----iv~~~~~~~   63 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHI-----VSRSEVTHTLAERTVLAQVNC--------PF----IVPLKFSFQ   63 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHh-----hhhhHHHHHHHHHHHHHhCCC--------Cc----EeceeeEEe
Confidence            79999999999974      89999874321     122234567899999999988        88    999988854


Q ss_pred             EeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHHHHh
Q 013230          214 CQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVAEAA  289 (447)
Q Consensus       214 ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~ylH~~  289 (447)
                      .                              ++.+|+||||+.+| +|.+++.    +++..++.++.||+.||.|||+ 
T Consensus        64 ~------------------------------~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~-  111 (312)
T cd05585          64 S------------------------------PEKLYLVLAFINGG-ELFHHLQREGRFDLSRARFYTAELLCALENLHK-  111 (312)
T ss_pred             c------------------------------CCeEEEEEcCCCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh-
Confidence            3                              56799999999988 9988875    8999999999999999999999 


Q ss_pred             CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCCCCCCCCC
Q 013230          290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPELFSGPKGD  364 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pelf~g~~~~  364 (447)
                      .||+||||||+|||++.++                    .+||+|||+++.....     .......|++||.+.+....
T Consensus       112 ~~i~HrDlkp~Nili~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  171 (312)
T cd05585         112 FNVIYRDLKPENILLDYQG--------------------HIALCDFGLCKLNMKDDDKTNTFCGTPEYLAPELLLGHGYT  171 (312)
T ss_pred             CCeEeCCCCHHHeEECCCC--------------------cEEEEECcccccCccCCCccccccCCcccCCHHHHcCCCCC
Confidence            9999999999999999887                    7999999999864322     11233458999999887777


Q ss_pred             chHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc--------CHHHHHcCC
Q 013230          365 KQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN--------SAKEAIFDP  436 (447)
Q Consensus       365 ~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d--------sa~elL~HP  436 (447)
                      .+.|+|+ +|++.+++++|..|+............+.  ..+..+...++++++||.+||.+|        +|.|+|+||
T Consensus       172 ~~~Dvws-lGvil~el~tg~~pf~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~L~~dp~~R~~~~~~~e~l~hp  248 (312)
T cd05585         172 KAVDWWT-LGVLLYEMLTGLPPFYDENVNEMYRKILQ--EPLRFPDGFDRDAKDLLIGLLSRDPTRRLGYNGAQEIKNHP  248 (312)
T ss_pred             Cccceec-hhHHHHHHHhCCCCcCCCCHHHHHHHHHc--CCCCCCCcCCHHHHHHHHHHcCCCHHHcCCCCCHHHHHcCC
Confidence            7789999 99999999999999876544444444442  233344678999999999999999        689999999


Q ss_pred             CCCCC
Q 013230          437 FFSDL  441 (447)
Q Consensus       437 ff~~~  441 (447)
                      ||++.
T Consensus       249 ~~~~~  253 (312)
T cd05585         249 FFSQL  253 (312)
T ss_pred             CcCCC
Confidence            99975

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.7e-36  Score=277.20  Aligned_cols=236  Identities=20%  Similarity=0.205  Sum_probs=199.6

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||+|-||.||+|+.      ||+|++.+...     ...+...++.+|++|-..|+|        ||    |.
T Consensus        23 dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi-----~~~~v~~qlrREiEIqs~L~h--------pn----il   85 (281)
T KOG0580|consen   23 DFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQI-----LKTQVEHQLRREIEIQSHLRH--------PN----IL   85 (281)
T ss_pred             hccccccccCCccccEeEeeeccCCcEEEEeeeeHHHH-----HHhcchhhhhheeEeecccCC--------cc----HH
Confidence            459999999999999999983      99999886643     333455778999999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVT  280 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil  280 (447)
                      ++|++|.                              ++..+|+++||...| .|+..+.      +++..+..+++|++
T Consensus        86 rlY~~fh------------------------------d~~riyLilEya~~g-el~k~L~~~~~~~f~e~~~a~Yi~q~A  134 (281)
T KOG0580|consen   86 RLYGYFH------------------------------DSKRIYLILEYAPRG-ELYKDLQEGRMKRFDEQRAATYIKQLA  134 (281)
T ss_pred             hhhhhee------------------------------ccceeEEEEEecCCc-hHHHHHHhcccccccccchhHHHHHHH
Confidence            9999954                              367899999999999 6666555      99999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-CEEEE--ecCCCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-DIFFL--DLSQDPEL  357 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-g~i~~--~~~~~pel  357 (447)
                      .||.|+|. ++||||||||||+|++..+                    .+||+|||.|.....+ -.+++  -.|.+||+
T Consensus       135 ~Al~y~h~-k~VIhRdiKpenlLlg~~~--------------------~lkiAdfGwsV~~p~~kR~tlcgt~dyl~pEm  193 (281)
T KOG0580|consen  135 NALLYCHL-KRVIHRDIKPENLLLGSAG--------------------ELKIADFGWSVHAPSNKRKTLCGTLDYLPPEM  193 (281)
T ss_pred             HHHHHhcc-CCcccCCCCHHHhccCCCC--------------------CeeccCCCceeecCCCCceeeecccccCCHhh
Confidence            99999999 9999999999999999998                    7999999999876533 12222  23789999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHH
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEA  432 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~el  432 (447)
                      ..+...+..+|+|. +|..+++...|..||..........++.  +..+..+..++.+++|||.+||+++     +..|+
T Consensus       194 v~~~~hd~~Vd~w~-lgvl~yeflvg~ppFes~~~~etYkrI~--k~~~~~p~~is~~a~dlI~~ll~~~p~~r~~l~~v  270 (281)
T KOG0580|consen  194 VEGRGHDKFVDLWS-LGVLCYEFLVGLPPFESQSHSETYKRIR--KVDLKFPSTISGGAADLISRLLVKNPIERLALTEV  270 (281)
T ss_pred             cCCCCccchhhHHH-HHHHHHHHHhcCCchhhhhhHHHHHHHH--HccccCCcccChhHHHHHHHHhccCccccccHHHH
Confidence            99988889999999 9999999999999998876444444544  3344445789999999999999999     89999


Q ss_pred             HcCCCCCC
Q 013230          433 IFDPFFSD  440 (447)
Q Consensus       433 L~HPff~~  440 (447)
                      +.|||...
T Consensus       271 ~~hpwI~a  278 (281)
T KOG0580|consen  271 MDHPWIVA  278 (281)
T ss_pred             hhhHHHHh
Confidence            99999864

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=2.7e-35  Score=297.71  Aligned_cols=239  Identities=18%  Similarity=0.211  Sum_probs=190.3

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+.++.||+|+||.||+|++      +|+|++.....     ........+.+|+.++..++|        +|    |+
T Consensus         2 ~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~e~~~l~~l~~--------~~----iv   64 (360)
T cd05627           2 DFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADM-----LEKEQVAHIRAERDILVEADG--------AW----VV   64 (360)
T ss_pred             CceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHH-----hhhhhHHHHHHHHHHHHhCCC--------CC----Ee
Confidence            569999999999999999973      99999874321     122334677889999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++.+..                              ++.+|+||||+.|| +|.+++.    +++..++.++.||+.|
T Consensus        65 ~~~~~~~~------------------------------~~~~~lv~E~~~gg-~L~~~l~~~~~l~~~~~~~~~~qi~~~  113 (360)
T cd05627          65 KMFYSFQD------------------------------KRNLYLIMEFLPGG-DMMTLLMKKDTLSEEATQFYIAETVLA  113 (360)
T ss_pred             eEEEEEEc------------------------------CCEEEEEEeCCCCc-cHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            99988542                              56799999999988 9998875    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------------------
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------------------  344 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------------------  344 (447)
                      |+|||+ +||+||||||+|||++.++                    .+||+|||+++.....                  
T Consensus       114 L~~lH~-~givHrDLkp~NIli~~~~--------------------~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (360)
T cd05627         114 IDAIHQ-LGFIHRDIKPDNLLLDAKG--------------------HVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFS  172 (360)
T ss_pred             HHHHHH-CCeEccCCCHHHEEECCCC--------------------CEEEeeccCCcccccccccccccccccCCccccc
Confidence            999999 9999999999999999887                    7999999998743211                  


Q ss_pred             ----------------------CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh
Q 013230          345 ----------------------DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL  402 (447)
Q Consensus       345 ----------------------g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~  402 (447)
                                            ..+....|++||++.+...+...|+|+ +|++.++++.|..||...........+...
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwS-lGvilyel~tG~~Pf~~~~~~~~~~~i~~~  251 (360)
T cd05627         173 FQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWS-LGVIMYEMLIGYPPFCSETPQETYRKVMNW  251 (360)
T ss_pred             ccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceecc-ccceeeecccCCCCCCCCCHHHHHHHHHcC
Confidence                                  112234489999998877777889999 999999999999998765433333333321


Q ss_pred             c--cCCCCCccchHHHHHHHHHhcccc--------CHHHHHcCCCCCCCC
Q 013230          403 K--KTFDRSSKDERDLRSLKKRLDKYN--------SAKEAIFDPFFSDLI  442 (447)
Q Consensus       403 ~--~~~~~~~~~s~~l~dLl~~mL~~d--------sa~elL~HPff~~~~  442 (447)
                      .  ..++.....++++++||.+|+. |        +++|+++||||+++.
T Consensus       252 ~~~~~~p~~~~~s~~~~~li~~l~~-~p~~R~~~~~~~ei~~hp~f~~~~  300 (360)
T cd05627         252 KETLVFPPEVPISEKAKDLILRFCT-DSENRIGSNGVEEIKSHPFFEGVD  300 (360)
T ss_pred             CCceecCCCCCCCHHHHHHHHHhcc-ChhhcCCCCCHHHHhcCCCCCCCC
Confidence            2  2234334578999999999875 5        589999999999864

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=1.4e-35  Score=302.15  Aligned_cols=239  Identities=18%  Similarity=0.196  Sum_probs=190.4

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|+.+++||+|+||.||+|++      +|+|++.....     ........+.+|+.+++.++|        +|    ||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~-----~~~~~~~~~~~E~~il~~~~h--------~~----iv   64 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDV-----LLRNQVAHVKAERDILAEADN--------EW----VV   64 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHh-----hhHHHHHHHHHHHHHHHhCCC--------Cc----CC
Confidence            358999999999999999974      99998874321     122334678899999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++.+..                              ++.+|+|||||.|| +|.+++.    +++..++.++.||+.|
T Consensus        65 ~~~~~~~~------------------------------~~~~~lv~E~~~gg-~L~~~l~~~~~~~e~~~~~~~~qi~~a  113 (382)
T cd05625          65 RLYYSFQD------------------------------KDNLYFVMDYIPGG-DMMSLLIRMGIFPEDLARFYIAELTCA  113 (382)
T ss_pred             eEEEEEEe------------------------------CCEEEEEEeCCCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            99998643                              56799999999988 8988875    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCC-------------------
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG-------------------  343 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~-------------------  343 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+|+....                   
T Consensus       114 l~~lH~-~~ivHrDlKp~NILl~~~g--------------------~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~  172 (382)
T cd05625         114 VESVHK-MGFIHRDIKPDNILIDRDG--------------------HIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMD  172 (382)
T ss_pred             HHHHHh-CCeecCCCCHHHEEECCCC--------------------CEEEeECCCCcccccccccccccccccccccccc
Confidence            999999 9999999999999999987                    799999999753210                   


Q ss_pred             ---------------------------------CCEEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChh
Q 013230          344 ---------------------------------EDIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV  390 (447)
Q Consensus       344 ---------------------------------~g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~  390 (447)
                                                       ...+....|++||++.+...+...|+|+ +|++.++++.|..||...
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwS-lGvil~elltG~~Pf~~~  251 (382)
T cd05625         173 FSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWS-VGVILYEMLVGQPPFLAQ  251 (382)
T ss_pred             ccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEe-chHHHHHHHhCCCCCCCC
Confidence                                             0012234489999998877777789999 999999999999999754


Q ss_pred             HHHHHHHHHHhhc--cCCCCCccchHHHHHHHHHhcccc--------CHHHHHcCCCCCCCC
Q 013230          391 LWLVYLVDMLLLK--KTFDRSSKDERDLRSLKKRLDKYN--------SAKEAIFDPFFSDLI  442 (447)
Q Consensus       391 ~~~~~~~~~l~~~--~~~~~~~~~s~~l~dLl~~mL~~d--------sa~elL~HPff~~~~  442 (447)
                      ........+....  ..++....+++++++||.+|+. +        +++++++||||+...
T Consensus       252 ~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~~-~p~~R~~~~~~~ei~~hp~f~~~~  312 (382)
T cd05625         252 TPLETQMKVINWQTSLHIPPQAKLSPEASDLIIKLCR-GPEDRLGKNGADEIKAHPFFKTID  312 (382)
T ss_pred             CHHHHHHHHHccCCCcCCCCcccCCHHHHHHHHHHcc-CHhHcCCCCCHHHHhcCCCcCCcC
Confidence            4333333333212  2344445689999999999876 4        499999999998764

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=4.3e-35  Score=286.40  Aligned_cols=239  Identities=18%  Similarity=0.152  Sum_probs=189.3

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+.++.||+|+||.||+|.+      ||+|++.....     ........+.+|+.+++.++|        +|    |+.
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~-----~~~~~~~~~~~E~~il~~l~~--------~~----iv~   64 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRI-----KKRKGEAMALNEKRILEKVNS--------RF----VVS   64 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhh-----hhhhhHHHHHHHHHHHHhcCC--------Cc----EEE
Confidence            58889999999999999973      99998875432     111223457889999999988        77    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +++++..                              ++.+|+||||+.+| +|..++.      +++..+..++.|++.
T Consensus        65 ~~~~~~~------------------------------~~~~~lv~e~~~~g-~L~~~~~~~~~~~~~~~~~~~~~~qi~~  113 (285)
T cd05631          65 LAYAYET------------------------------KDALCLVLTIMNGG-DLKFHIYNMGNPGFDEQRAIFYAAELCC  113 (285)
T ss_pred             EEEEEcc------------------------------CCeEEEEEEecCCC-cHHHHHHhhCCCCCCHHHHHHHHHHHHH
Confidence            9888543                              56799999999988 8877653      789999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPEL  357 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pel  357 (447)
                      ||+|||+ .||+||||||+|||++.++                    .+||+|||+|+......    .+....|++||.
T Consensus       114 ~l~~lH~-~~iiH~dikp~Nill~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~  172 (285)
T cd05631         114 GLEDLQR-ERIVYRDLKPENILLDDRG--------------------HIRISDLGLAVQIPEGETVRGRVGTVGYMAPEV  172 (285)
T ss_pred             HHHHHHh-CCEEeCCCCHHHEEECCCC--------------------CEEEeeCCCcEEcCCCCeecCCCCCCCccCHhh
Confidence            9999999 9999999999999999887                    79999999998754321    223345899999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHH---HHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C-
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLW---LVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S-  428 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~---~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s-  428 (447)
                      +.+...+...|+|+ +|++.++++.|..|+.....   .......+ .......+...+.++.+||++||..|     | 
T Consensus       173 ~~~~~~~~~~Dvws-lGvil~el~~g~~pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~li~~~l~~~P~~R~~~  250 (285)
T cd05631         173 INNEKYTFSPDWWG-LGCLIYEMIQGQSPFRKRKERVKREEVDRRV-KEDQEEYSEKFSEDAKSICRMLLTKNPKERLGC  250 (285)
T ss_pred             hcCCCCCcccCchh-HHHHHHHHHhCCCCCCCCCcchhHHHHHHHh-hcccccCCccCCHHHHHHHHHHhhcCHHHhcCC
Confidence            98877777789999 99999999999999865321   11111111 12233344568999999999999999     4 


Q ss_pred             ----HHHHHcCCCCCCCCC
Q 013230          429 ----AKEAIFDPFFSDLIV  443 (447)
Q Consensus       429 ----a~elL~HPff~~~~~  443 (447)
                          |+++++||||+++..
T Consensus       251 ~~~~~~~~~~h~~~~~~~~  269 (285)
T cd05631         251 RGNGAAGVKQHPIFKNINF  269 (285)
T ss_pred             CCCCHHHHhcCHhhcCCCH
Confidence                899999999998743

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=3.7e-35  Score=293.20  Aligned_cols=232  Identities=19%  Similarity=0.207  Sum_probs=188.4

Q ss_pred             EEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeE
Q 013230          138 VKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEI  211 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~  211 (447)
                      +.||+|+||.||+|++      ||+|++.....     ........+.+|+.+++.++|        ||    |++++++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~-----~~~~~~~~~~~E~~~l~~l~h--------p~----iv~~~~~   63 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVI-----IAKDEVAHTLTESRVLKNTRH--------PF----LTSLKYS   63 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHh-----hhhhHHHHHHHHHHHHHhCCC--------CC----CcceEEE
Confidence            4699999999999973      99999875422     122234577899999999988        88    9999888


Q ss_pred             EEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHHH
Q 013230          212 KVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVAE  287 (447)
Q Consensus       212 ~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~ylH  287 (447)
                      +..                              ++.+|+||||+.+| +|..++.    +++..++.++.||+.||+|||
T Consensus        64 ~~~------------------------------~~~~~lv~Ey~~~g-~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH  112 (328)
T cd05593          64 FQT------------------------------KDRLCFVMEYVNGG-ELFFHLSRERVFSEDRTRFYGAEIVSALDYLH  112 (328)
T ss_pred             EEc------------------------------CCEEEEEEeCCCCC-CHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            543                              56799999999988 8887765    899999999999999999999


Q ss_pred             HhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-C----EEEEecCCCCCCCCCCC
Q 013230          288 AAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-D----IFFLDLSQDPELFSGPK  362 (447)
Q Consensus       288 ~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-g----~i~~~~~~~pelf~g~~  362 (447)
                      + .||+||||||+|||++.++                    .+||+|||+++..... .    ......|++||.+.+..
T Consensus       113 ~-~~ivHrDikp~NIll~~~~--------------------~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  171 (328)
T cd05593         113 S-GKIVYRDLKLENLMLDKDG--------------------HIKITDFGLCKEGITDAATMKTFCGTPEYLAPEVLEDND  171 (328)
T ss_pred             h-CCeEecccCHHHeEECCCC--------------------cEEEecCcCCccCCCcccccccccCCcCccChhhhcCCC
Confidence            9 9999999999999999887                    7999999999864322 1    11234589999998877


Q ss_pred             CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----------CHHHH
Q 013230          363 GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----------SAKEA  432 (447)
Q Consensus       363 ~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----------sa~el  432 (447)
                      ...+.|+|+ +|++.++++.|..|+.+.........+..  .....+..+++++++||++||+.|          +|.|+
T Consensus       172 ~~~~~Diws-lGvil~elltG~~Pf~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~i  248 (328)
T cd05593         172 YGRAVDWWG-LGVVMYEMMCGRLPFYNQDHEKLFELILM--EDIKFPRTLSADAKSLLSGLLIKDPNKRLGGGPDDAKEI  248 (328)
T ss_pred             CCccCCccc-cchHHHHHhhCCCCCCCCCHHHHHHHhcc--CCccCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHH
Confidence            777789999 99999999999999976655444444432  233344678999999999999999          69999


Q ss_pred             HcCCCCCCC
Q 013230          433 IFDPFFSDL  441 (447)
Q Consensus       433 L~HPff~~~  441 (447)
                      ++||||.+.
T Consensus       249 l~h~~~~~~  257 (328)
T cd05593         249 MRHSFFTGV  257 (328)
T ss_pred             hcCCCcCCC
Confidence            999999875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=6e-35  Score=287.66  Aligned_cols=238  Identities=21%  Similarity=0.284  Sum_probs=182.3

Q ss_pred             CCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccce
Q 013230          132 SDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~i  205 (447)
                      .+|+++++||+|+||.||+|++      +|+|++....       .......+.+|+.+++.++|        ||    |
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------~n----i   65 (303)
T cd07869           5 DSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQE-------EEGTPFTAIREASLLKGLKH--------AN----I   65 (303)
T ss_pred             ccceEeeeEEecCCEEEEEEEECCCCCEEEEEEecccc-------ccccchhHHHHHHHHhhCCC--------CC----c
Confidence            4579999999999999999973      8999887442       11223457889999999998        88    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVT  280 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil  280 (447)
                      +++++++..                              +...|+||||+. | +|.+++.     +++..++.++.||+
T Consensus        66 v~~~~~~~~------------------------------~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~~~~~~~~~qi~  113 (303)
T cd07869          66 VLLHDIIHT------------------------------KETLTLVFEYVH-T-DLCQYMDKHPGGLHPENVKLFLFQLL  113 (303)
T ss_pred             CeEEEEEec------------------------------CCeEEEEEECCC-c-CHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence            999998542                              567999999996 4 6766654     88999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDP  355 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~p  355 (447)
                      .||+|||+ .||+||||||+|||++.++                    .+||+|||+++.....     +......|++|
T Consensus       114 ~al~~lH~-~~ivH~dlkp~Nill~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aP  172 (303)
T cd07869         114 RGLSYIHQ-RYILHRDLKPQNLLISDTG--------------------ELKLADFGLARAKSVPSHTYSNEVVTLWYRPP  172 (303)
T ss_pred             HHHHHHHH-CCeecCCCCHHHEEECCCC--------------------CEEECCCCcceeccCCCccCCCCcccCCCCCh
Confidence            99999999 9999999999999999887                    7999999999764322     22334558999


Q ss_pred             CCCCCCC-CCchHHHHHhhccCCcccccCCCCCChhHHH-HHHHHHHh--hc-----------------cCCC--C----
Q 013230          356 ELFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWL-VYLVDMLL--LK-----------------KTFD--R----  408 (447)
Q Consensus       356 elf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~-~~~~~~l~--~~-----------------~~~~--~----  408 (447)
                      |++.+.. .....|+|+ +|++.++++.|..||...... ..+.....  ..                 ..+.  .    
T Consensus       173 E~~~~~~~~~~~~Diws-lG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (303)
T cd07869         173 DVLLGSTEYSTCLDMWG-VGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERFTLYSPKNL  251 (303)
T ss_pred             HHHcCCCCCCcHHHHHH-HHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhCCCChhhccchhhccccccccccccCCccH
Confidence            9987644 455669999 999999999999888643111 11111100  00                 0000  0    


Q ss_pred             -----CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCC
Q 013230          409 -----SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       409 -----~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~  442 (447)
                           ....+++++|||++||++|     ||.|+|+||||+++.
T Consensus       252 ~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~h~~f~~~~  295 (303)
T cd07869         252 RQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALSHEYFSDLP  295 (303)
T ss_pred             HHHhhccCCChHHHHHHHHHhccCchhccCHHHHhcCcccccCC
Confidence                 0123578999999999999     999999999999875

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=6.3e-35  Score=290.81  Aligned_cols=234  Identities=19%  Similarity=0.217  Sum_probs=187.5

Q ss_pred             EEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeE
Q 013230          138 VKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEI  211 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~  211 (447)
                      +.||+|+||.||+|++      +|+|++.....     ..........+|+.+++.++|        ||    |++++++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~-----~~~~~~~~~~~e~~~l~~~~h--------p~----i~~~~~~   63 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVI-----VAKDEVAHTLTENRVLQNSRH--------PF----LTALKYS   63 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHh-----hhhhHHHHHHHHHHHHHhCCC--------CC----CCceEEE
Confidence            4699999999999973      99999875321     122234567889999999988        88    9999888


Q ss_pred             EEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHHH
Q 013230          212 KVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVAE  287 (447)
Q Consensus       212 ~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~ylH  287 (447)
                      +..                              ++.+|+||||+.+| +|..++.    +++..++.++.||+.||+|||
T Consensus        64 ~~~------------------------------~~~~~lv~E~~~~~-~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH  112 (325)
T cd05594          64 FQT------------------------------HDRLCFVMEYANGG-ELFFHLSRERVFSEDRARFYGAEIVSALDYLH  112 (325)
T ss_pred             EEc------------------------------CCEEEEEEeCCCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            543                              56799999999988 8888765    899999999999999999999


Q ss_pred             HhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCCCCCCC
Q 013230          288 AAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPELFSGPK  362 (447)
Q Consensus       288 ~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pelf~g~~  362 (447)
                      +..||+||||||+|||++.++                    .+||+|||+++.....+     ......|++||.+.+..
T Consensus       113 ~~~~ivHrDikp~NIll~~~~--------------------~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  172 (325)
T cd05594         113 SEKNVVYRDLKLENLMLDKDG--------------------HIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDND  172 (325)
T ss_pred             hcCCEEecCCCCCeEEECCCC--------------------CEEEecCCCCeecCCCCcccccccCCcccCCHHHHccCC
Confidence            647999999999999999887                    79999999987643221     12234589999998877


Q ss_pred             CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----------CHHHH
Q 013230          363 GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----------SAKEA  432 (447)
Q Consensus       363 ~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----------sa~el  432 (447)
                      ...+.|||+ +|++.+++++|..|+...........+..  .....+...++++++||++||++|          ++.++
T Consensus       173 ~~~~~Diws-lG~il~el~tG~~Pf~~~~~~~~~~~i~~--~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~i  249 (325)
T cd05594         173 YGRAVDWWG-LGVVMYEMMCGRLPFYNQDHEKLFELILM--EEIRFPRTLSPEAKSLLSGLLKKDPKQRLGGGPDDAKEI  249 (325)
T ss_pred             CCCcccccc-ccceeeeeccCCCCCCCCCHHHHHHHHhc--CCCCCCCCCCHHHHHHHHHHhhcCHHHhCCCCCCCHHHH
Confidence            777789999 99999999999999976544433333332  233334568999999999999999          69999


Q ss_pred             HcCCCCCCCC
Q 013230          433 IFDPFFSDLI  442 (447)
Q Consensus       433 L~HPff~~~~  442 (447)
                      ++||||++..
T Consensus       250 l~h~~~~~~~  259 (325)
T cd05594         250 MQHKFFAGIV  259 (325)
T ss_pred             hcCCCcCCCC
Confidence            9999998753

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.3e-35  Score=296.10  Aligned_cols=240  Identities=19%  Similarity=0.217  Sum_probs=194.1

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|++      ||+|++.....     ........+.+|+.++..++|        +|    |+
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~e~~~l~~~~~--------~~----i~   64 (350)
T cd05573           2 DFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDM-----IKRNQIAHVRAERDILADADS--------PW----IV   64 (350)
T ss_pred             CceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHH-----hhccHHHHHHHHHHHHHhcCC--------CC----cc
Confidence            469999999999999999973      99999875421     122334668899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              ++.+|+||||+.+| +|.+++.    +++..++.++.||+.|
T Consensus        65 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~l~~~~~~~i~~qi~~a  113 (350)
T cd05573          65 KLYYSFQD------------------------------EEHLYLVMEYMPGG-DLMNLLIRKDVFPEETARFYIAELVLA  113 (350)
T ss_pred             chhhheec------------------------------CCeEEEEEcCCCCC-CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            99888532                              56799999999988 9998875    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----------------
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----------------  345 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----------------  345 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+++......                 
T Consensus       114 L~~LH~-~giiH~Dlkp~NIll~~~~--------------------~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (350)
T cd05573         114 LDSVHK-LGFIHRDIKPDNILIDADG--------------------HIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDN  172 (350)
T ss_pred             HHHHHH-CCeeccCCCHHHeEECCCC--------------------CEEeecCCCCccCcccCccccccccccccccccc
Confidence            999999 9999999999999999987                    79999999998654332                 


Q ss_pred             -----------------EEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh--hccCC
Q 013230          346 -----------------IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL--LKKTF  406 (447)
Q Consensus       346 -----------------~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~--~~~~~  406 (447)
                                       .+....|++||++.+...+.+.|||+ +|++.++++.|..|+...........+..  ....+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwS-lG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~  251 (350)
T cd05573         173 VLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWS-LGVILYEMLYGFPPFYSDTLQETYNKIINWKESLRF  251 (350)
T ss_pred             ccccccccccccccccccccCccccCHHHHcCCCCCCceeeEe-cchhhhhhccCCCCCCCCCHHHHHHHHhccCCcccC
Confidence                             12334589999998887777889999 99999999999999876544333333332  12234


Q ss_pred             CCCccchHHHHHHHHHhcccc-----C-HHHHHcCCCCCCCCC
Q 013230          407 DRSSKDERDLRSLKKRLDKYN-----S-AKEAIFDPFFSDLIV  443 (447)
Q Consensus       407 ~~~~~~s~~l~dLl~~mL~~d-----s-a~elL~HPff~~~~~  443 (447)
                      +....+++++++||.+||. |     + |+++++||||+++..
T Consensus       252 p~~~~~~~~~~~li~~ll~-dp~~R~~s~~~ll~hp~~~~~~~  293 (350)
T cd05573         252 PPDPPVSPEAIDLICRLLC-DPEDRLGSFEEIKSHPFFKGIDW  293 (350)
T ss_pred             CCCCCCCHHHHHHHHHHcc-ChhhcCCCHHHHhcCCCcCCCCH
Confidence            4444469999999999997 7     6 999999999987643

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=6.1e-36  Score=290.33  Aligned_cols=233  Identities=20%  Similarity=0.275  Sum_probs=197.9

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||+|-+|..      ||||.|+++..     ..++..-++.+||+||..|+|        ||    ||.
T Consensus        55 yE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkI-----kdeqDlvhIRREIeIMSsLNH--------Ph----II~  117 (668)
T KOG0611|consen   55 YEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKI-----KDEQDLVHIRREIEIMSSLNH--------PH----IIQ  117 (668)
T ss_pred             HHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhc-----ccHHHHHHHHHHHHHHhhcCC--------Cc----eee
Confidence            49999999999999999973      99999987755     445556789999999999999        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +|++|                              .+.+.+.|||||..+| .|++++.    +++.+++.|++||+.|+
T Consensus       118 IyEVF------------------------------ENkdKIvivMEYaS~G-eLYDYiSer~~LsErEaRhfFRQIvSAV  166 (668)
T KOG0611|consen  118 IYEVF------------------------------ENKDKIVIVMEYASGG-ELYDYISERGSLSEREARHFFRQIVSAV  166 (668)
T ss_pred             hhhhh------------------------------cCCceEEEEEEecCCc-cHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            99994                              4477899999999999 9999997    99999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPELFS  359 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pelf~  359 (447)
                      .|||. ++|+|||||.||||++.++                    ++||+||||+-.+....    .....+|..||+..
T Consensus       167 hYCHk-nrVvHRDLKLENILLD~N~--------------------NiKIADFGLSNly~~~kfLqTFCGSPLYASPEIvN  225 (668)
T KOG0611|consen  167 HYCHK-NRVVHRDLKLENILLDQNN--------------------NIKIADFGLSNLYADKKFLQTFCGSPLYASPEIVN  225 (668)
T ss_pred             HHHhh-ccceecccchhheeecCCC--------------------CeeeeccchhhhhccccHHHHhcCCcccCCccccC
Confidence            99999 9999999999999999998                    79999999998876652    12446788999999


Q ss_pred             CCCCCch-HHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHH
Q 013230          360 GPKGDKQ-FDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAI  433 (447)
Q Consensus       360 g~~~~~~-~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL  433 (447)
                      |..+... +|.|+ +|+.+|...-|..||..........++-.+.-.-|   .-+.++.-||+-||..|     |+.++.
T Consensus       226 G~PY~GPEVDsWs-LGvLLYtLVyGtMPFDG~Dhk~lvrQIs~GaYrEP---~~PSdA~gLIRwmLmVNP~RRATieDiA  301 (668)
T KOG0611|consen  226 GTPYKGPEVDSWS-LGVLLYTLVYGTMPFDGRDHKRLVRQISRGAYREP---ETPSDASGLIRWMLMVNPERRATIEDIA  301 (668)
T ss_pred             CCCCCCCccchhh-HHHHHHHHhhcccccCCchHHHHHHHhhcccccCC---CCCchHHHHHHHHHhcCcccchhHHHHh
Confidence            9876654 49999 99999999999999988776666665553322222   23457889999999999     999999


Q ss_pred             cCCCCC
Q 013230          434 FDPFFS  439 (447)
Q Consensus       434 ~HPff~  439 (447)
                      .|=|.+
T Consensus       302 sHWWvN  307 (668)
T KOG0611|consen  302 SHWWVN  307 (668)
T ss_pred             hhheee
Confidence            998875

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=6.2e-35  Score=290.82  Aligned_cols=233  Identities=18%  Similarity=0.199  Sum_probs=188.6

Q ss_pred             EEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeE
Q 013230          138 VKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEI  211 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~  211 (447)
                      +.||+|+||.||+|++      ||+|++.....     ........+.+|+.+++.++|        ||    |++++++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~~~~~E~~~l~~l~h--------p~----i~~~~~~   63 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVI-----IAKDEVAHTVTESRVLQNTRH--------PF----LTALKYA   63 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHh-----hhhHHHHHHHHHHHHHHhCCC--------CC----CcceeeE
Confidence            4699999999999973      89999875421     122234567889999999988        88    9999988


Q ss_pred             EEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHHH
Q 013230          212 KVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVAE  287 (447)
Q Consensus       212 ~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~ylH  287 (447)
                      |..                              .+.+|+||||+.+| +|..++.    +++..++.++.||+.||+|||
T Consensus        64 ~~~------------------------------~~~~~lv~E~~~~~-~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH  112 (323)
T cd05595          64 FQT------------------------------HDRLCFVMEYANGG-ELFFHLSRERVFTEERARFYGAEIVSALEYLH  112 (323)
T ss_pred             Eec------------------------------CCEEEEEEeCCCCC-cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            643                              56799999999988 8987765    899999999999999999999


Q ss_pred             HhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCCCCCCC
Q 013230          288 AAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPELFSGPK  362 (447)
Q Consensus       288 ~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pelf~g~~  362 (447)
                      + +||+||||||+|||++.++                    .+||+|||+++......     ......|++||.+.+..
T Consensus       113 ~-~~ivH~Dlkp~NIll~~~~--------------------~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  171 (323)
T cd05595         113 S-RDVVYRDIKLENLMLDKDG--------------------HIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDND  171 (323)
T ss_pred             H-CCeEecCCCHHHEEEcCCC--------------------CEEecccHHhccccCCCCccccccCCcCcCCcccccCCC
Confidence            9 9999999999999999887                    79999999987642221     12234589999998877


Q ss_pred             CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----------CHHHH
Q 013230          363 GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----------SAKEA  432 (447)
Q Consensus       363 ~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----------sa~el  432 (447)
                      ...+.|+|+ +|++.++++.|..|+...............  ....+..+++++++||++||+.|          ++.++
T Consensus       172 ~~~~~DiwS-lGvil~ell~g~~Pf~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~  248 (323)
T cd05595         172 YGRAVDWWG-LGVVMYEMMCGRLPFYNQDHERLFELILME--EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEV  248 (323)
T ss_pred             CCchhchhh-hHHHHHHHHhCCCCCCCCCHHHHHHHHhcC--CCCCCCCCCHHHHHHHHHHccCCHHHhCCCCCCCHHHH
Confidence            777889999 999999999999998765444444444422  23334568999999999999999          79999


Q ss_pred             HcCCCCCCCC
Q 013230          433 IFDPFFSDLI  442 (447)
Q Consensus       433 L~HPff~~~~  442 (447)
                      ++||||....
T Consensus       249 l~h~~~~~~~  258 (323)
T cd05595         249 MEHRFFLSIN  258 (323)
T ss_pred             HcCCCcCCCC
Confidence            9999998753

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=6.3e-35  Score=290.70  Aligned_cols=240  Identities=22%  Similarity=0.213  Sum_probs=191.6

Q ss_pred             CcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|+      .||+|++.....     ......+.+.+|++++..++.++|     ||    |++
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~l~~e~~~~~~~~~l~h-----p~----i~~   66 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDI-----IARDEVESLMCEKRIFETANSERH-----PF----LVN   66 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHh-----hhhhHHHHHHHHHHHHHhccccCC-----CC----hhc
Confidence            5889999999999999997      399999875421     122234667888888776655444     77    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~  284 (447)
                      +++++..                              .+.+|+||||+.|| +|..++.   +++..++.++.||+.||+
T Consensus        67 ~~~~~~~------------------------------~~~~~lv~E~~~~~-~L~~~~~~~~l~~~~~~~~~~qi~~al~  115 (324)
T cd05589          67 LFACFQT------------------------------EDHVCFVMEYAAGG-DLMMHIHTDVFSEPRAVFYAACVVLGLQ  115 (324)
T ss_pred             eeeEEEc------------------------------CCEEEEEEcCCCCC-cHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence            9998543                              56799999999988 9988776   899999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPELFS  359 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pelf~  359 (447)
                      |||+ .||+||||||+|||++.++                    .+||+|||+++.....+     ......|++||++.
T Consensus       116 ~lH~-~~ivHrdlkp~Nill~~~~--------------------~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~  174 (324)
T cd05589         116 YLHE-NKIVYRDLKLDNLLLDTEG--------------------FVKIADFGLCKEGMGFGDRTSTFCGTPEFLAPEVLT  174 (324)
T ss_pred             HHHh-CCeEecCCCHHHeEECCCC--------------------cEEeCcccCCccCCCCCCcccccccCccccCHhHhc
Confidence            9999 9999999999999999987                    79999999987543221     12234589999998


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----------CH
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----------SA  429 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----------sa  429 (447)
                      +.....+.|+|+ +|++.++++.|..|+...........+....  ...+..+++++.+||++||+.|          ++
T Consensus       175 ~~~~~~~~Diws-lG~il~el~~G~~pf~~~~~~~~~~~i~~~~--~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~  251 (324)
T cd05589         175 ETSYTRAVDWWG-LGVLIYEMLVGESPFPGDDEEEVFDSIVNDE--VRYPRFLSREAISIMRRLLRRNPERRLGSGEKDA  251 (324)
T ss_pred             CCCCCcccchhh-HHHHHHHHHhCCCCCCCCCHHHHHHHHHhCC--CCCCCCCCHHHHHHHHHHhhcCHhHcCCCCCCCH
Confidence            877777789999 9999999999999987654444444443222  2334568999999999999999          59


Q ss_pred             HHHHcCCCCCCCC
Q 013230          430 KEAIFDPFFSDLI  442 (447)
Q Consensus       430 ~elL~HPff~~~~  442 (447)
                      .++++||||+++.
T Consensus       252 ~~l~~~~~f~~~~  264 (324)
T cd05589         252 EDVKKQPFFRDIN  264 (324)
T ss_pred             HHHhhCCCcCCCC
Confidence            9999999998753

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-36  Score=306.12  Aligned_cols=237  Identities=22%  Similarity=0.303  Sum_probs=201.1

Q ss_pred             cceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      +++..||.|+||.||+|.+      .|.|+|..+        ...-.+.++-||.||..++|        |+    ||+|
T Consensus        35 eIiGELGDGAFGKVyKA~nket~~lAAaKvIetk--------seEELEDylVEIeILa~CdH--------P~----ivkL   94 (1187)
T KOG0579|consen   35 EIIGELGDGAFGKVYKAVNKETKLLAAAKVIETK--------SEEELEDYLVEIEILAECDH--------PV----IVKL   94 (1187)
T ss_pred             HHHhhhcCccchhhhhhhcccchhhhhhhhhccc--------chhHHhhhhhhhhhhhcCCC--------hH----HHHH
Confidence            6778999999999999985      566766543        22345788999999999998        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~gL  283 (447)
                      ++.|+.                              ++.+||..|||.|| -...++.     |++++++.+.+|++.||
T Consensus        95 l~ayy~------------------------------enkLwiliEFC~GG-AVDaimlEL~r~LtE~QIqvvc~q~ldAL  143 (1187)
T KOG0579|consen   95 LSAYYF------------------------------ENKLWILIEFCGGG-AVDAIMLELGRVLTEDQIQVVCYQVLDAL  143 (1187)
T ss_pred             HHHHhc------------------------------cCceEEEEeecCCc-hHhHHHHHhccccchHHHHHHHHHHHHHH
Confidence            999765                              67799999999998 7776665     99999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCC-----CCEEEEecCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG-----EDIFFLDLSQDPELF  358 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~-----~g~i~~~~~~~pelf  358 (447)
                      .|||+ .+|||||||.+|||+..+|                    .|+|+|||+|.....     +..|...++|+|++.
T Consensus       144 n~LHs-~~iIHRDLKAGNiL~TldG--------------------dirLADFGVSAKn~~t~qkRDsFIGTPYWMAPEVv  202 (1187)
T KOG0579|consen  144 NWLHS-QNIIHRDLKAGNILLTLDG--------------------DIRLADFGVSAKNKSTRQKRDSFIGTPYWMAPEVV  202 (1187)
T ss_pred             HHHhh-cchhhhhccccceEEEecC--------------------cEeeecccccccchhHHhhhccccCCcccccchhe
Confidence            99999 9999999999999999998                    799999999865433     355677778888765


Q ss_pred             -----CCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc-cCCCCCccchHHHHHHHHHhcccc-----
Q 013230          359 -----SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK-KTFDRSSKDERDLRSLKKRLDKYN-----  427 (447)
Q Consensus       359 -----~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~-~~~~~~~~~s~~l~dLl~~mL~~d-----  427 (447)
                           ....+++..|||+ +|+.+.+|..+..|......++.+.++.... +.+-.|+.++..+.|||++||.+|     
T Consensus       203 mCET~KD~PYDykaDiWS-lGITLIEMAqiEPPHhelnpMRVllKiaKSePPTLlqPS~Ws~~F~DfLk~cL~Knp~~Rp  281 (1187)
T KOG0579|consen  203 MCETFKDQPYDYKADIWS-LGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLLQPSHWSRSFSDFLKRCLVKNPRNRP  281 (1187)
T ss_pred             eeccccCCCchhhhhHHh-hhhHHHHHhccCCCccccchHHHHHHHhhcCCCcccCcchhhhHHHHHHHHHHhcCCccCC
Confidence                 5667788889999 9999999999999998887777777776322 334458899999999999999999     


Q ss_pred             CHHHHHcCCCCCCCCCC
Q 013230          428 SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       428 sa~elL~HPff~~~~~~  444 (447)
                      +|+++|+||||++....
T Consensus       282 ~aaqll~Hpfv~~~~Sn  298 (1187)
T KOG0579|consen  282 PAAQLLKHPFVQNAPSN  298 (1187)
T ss_pred             CHHHHhhCcccccCCcc
Confidence            99999999999987543

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=3.7e-35  Score=298.18  Aligned_cols=239  Identities=18%  Similarity=0.178  Sum_probs=191.1

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|++      +|+|++.....     ........+.+|+.+++.++|        ||    |+
T Consensus        44 ~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~e~~i~~~~~h--------p~----iv  106 (370)
T cd05621          44 DYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEM-----IKRSDSAFFWEERDIMAFANS--------PW----VV  106 (370)
T ss_pred             HCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHh-----hhhhhHHHHHHHHHHHHhCCC--------CC----Ee
Confidence            359999999999999999973      99998864321     122233557889999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGL  283 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL  283 (447)
                      ++++++..                              ++.+|+|||||.|| +|.+++.   +++..++.++.||+.||
T Consensus       107 ~~~~~~~~------------------------------~~~~~lv~Ey~~gg-~L~~~l~~~~~~~~~~~~~~~qil~aL  155 (370)
T cd05621         107 QLFCAFQD------------------------------DKYLYMVMEYMPGG-DLVNLMSNYDVPEKWAKFYTAEVVLAL  155 (370)
T ss_pred             eEEEEEEc------------------------------CCEEEEEEcCCCCC-cHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            99998543                              56799999999988 9999886   89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE------EEEecCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI------FFLDLSQDPEL  357 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~------i~~~~~~~pel  357 (447)
                      +|||+ .||+||||||+|||++.++                    .+||+|||+|+.....+.      .....|++||+
T Consensus       156 ~~LH~-~~IvHrDLKp~NILl~~~~--------------------~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE~  214 (370)
T cd05621         156 DAIHS-MGLIHRDVKPDNMLLDKHG--------------------HLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEV  214 (370)
T ss_pred             HHHHH-CCeEecCCCHHHEEECCCC--------------------CEEEEecccceecccCCceecccCCCCcccCCHHH
Confidence            99999 9999999999999999887                    799999999987643321      23345899999


Q ss_pred             CCCCC----CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhcc--CCCCCccchHHHHHHHHHhcccc----
Q 013230          358 FSGPK----GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKK--TFDRSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       358 f~g~~----~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~--~~~~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      +.+..    ...+.|+|+ +|++.++++.|..||...........+.....  .++....++..+++|+.+||..+    
T Consensus       215 ~~~~~~~~~~~~~~DiwS-lG~ilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~~L~~~~~r~  293 (370)
T cd05621         215 LKSQGGDGYYGRECDWWS-VGVFLFEMLVGDTPFYADSLVGTYSKIMDHKNSLNFPEDVEISKHAKNLICAFLTDREVRL  293 (370)
T ss_pred             HhccCCCCCCCcccCEEe-ehHHHHHHHhCCCCCCCCCHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHccCchhcc
Confidence            86543    345669999 99999999999999976554444444443222  33433457999999999999744    


Q ss_pred             ---CHHHHHcCCCCCCC
Q 013230          428 ---SAKEAIFDPFFSDL  441 (447)
Q Consensus       428 ---sa~elL~HPff~~~  441 (447)
                         |++|+++||||+..
T Consensus       294 ~R~~~~e~l~hp~~~~~  310 (370)
T cd05621         294 GRNGVEEIKQHPFFKND  310 (370)
T ss_pred             CCCCHHHHhcCcccCCC
Confidence               89999999999863

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=1.5e-34  Score=288.03  Aligned_cols=239  Identities=17%  Similarity=0.162  Sum_probs=189.6

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|++      ||+|++.....     ......+.+..|+.++..++|        ++   +|+
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~-----~~~~~~~~~~~e~~~l~~~~~--------~~---~i~   64 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVI-----IQDDDVECTMVEKRVLALPGK--------PP---FLT   64 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHh-----hhhhHHHHHHHHHHHHHhcCC--------CC---cee
Confidence            468999999999999999973      99999875421     112234567889999988876        32   278


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      .+++++..                              .+.+|+||||+.|| +|.+++.    +++..++.++.||+.|
T Consensus        65 ~~~~~~~~------------------------------~~~~~lv~E~~~~g-~L~~~~~~~~~~~~~~~~~~~~qi~~a  113 (324)
T cd05587          65 QLHSCFQT------------------------------MDRLYFVMEYVNGG-DLMYHIQQVGKFKEPHAVFYAAEIAIG  113 (324)
T ss_pred             eeEEEEEc------------------------------CCEEEEEEcCCCCC-cHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            88887543                              56799999999988 9988875    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-C----EEEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-D----IFFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-g----~i~~~~~~~pel  357 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+++..... .    ......|++||+
T Consensus       114 l~~lH~-~~ivH~dlkp~Nill~~~~--------------------~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~  172 (324)
T cd05587         114 LFFLHS-KGIIYRDLKLDNVMLDAEG--------------------HIKIADFGMCKENIFGGKTTRTFCGTPDYIAPEI  172 (324)
T ss_pred             HHHHHH-CCeEecCCCHHHeEEcCCC--------------------CEEEeecCcceecCCCCCceeeecCCccccChhh
Confidence            999999 9999999999999999987                    7999999998753221 1    112345899999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C----
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S----  428 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s----  428 (447)
                      +.+...+.+.|+|+ +|++.+++++|..|+...........+..  .....+...++++++|+++||..|     +    
T Consensus       173 ~~~~~~~~~~Diws-lGvil~elltG~~pf~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~  249 (324)
T cd05587         173 IAYQPYGKSVDWWA-FGVLLYEMLAGQPPFDGEDEDELFQSIME--HNVSYPKSLSKEAVSICKGLLTKHPAKRLGCGPT  249 (324)
T ss_pred             hcCCCCCcccchhh-hHHHHHHHHhCCCCCCCCCHHHHHHHHHc--CCCCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCC
Confidence            98877777789999 99999999999999876544333333332  233334568999999999999999     3    


Q ss_pred             -HHHHHcCCCCCCCC
Q 013230          429 -AKEAIFDPFFSDLI  442 (447)
Q Consensus       429 -a~elL~HPff~~~~  442 (447)
                       .+++++||||+...
T Consensus       250 ~~~~~~~hp~~~~~~  264 (324)
T cd05587         250 GERDIREHAFFRRID  264 (324)
T ss_pred             CHHHHhcCCCcCCCC
Confidence             38999999998753

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=4.5e-35  Score=297.51  Aligned_cols=239  Identities=19%  Similarity=0.184  Sum_probs=190.4

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|++      +|+|++.....     ........+.+|+.+++.++|        ||    |+
T Consensus        44 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~e~~il~~~~h--------~~----iv  106 (370)
T cd05596          44 DFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEM-----IKRSDSAFFWEERDIMAHANS--------EW----IV  106 (370)
T ss_pred             HcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHh-----hhhhhHHHHHHHHHHHHhCCC--------CC----cc
Confidence            459999999999999999973      99999874321     112233457789999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGL  283 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL  283 (447)
                      ++++++..                              ++.+|+||||+.|| +|.+++.   +++..++.++.||+.||
T Consensus       107 ~~~~~~~~------------------------------~~~~~lv~Ey~~gg-~L~~~l~~~~l~~~~~~~~~~qi~~aL  155 (370)
T cd05596         107 QLHYAFQD------------------------------DKYLYMVMEYMPGG-DLVNLMSNYDIPEKWARFYTAEVVLAL  155 (370)
T ss_pred             eEEEEEec------------------------------CCEEEEEEcCCCCC-cHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            99988532                              56799999999988 9999876   89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE------EEEecCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI------FFLDLSQDPEL  357 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~------i~~~~~~~pel  357 (447)
                      +|||+ .||+||||||+|||++.++                    .+||+|||+++.....+.      .....|++||+
T Consensus       156 ~~LH~-~~ivHrDLkp~NILl~~~~--------------------~~kL~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~  214 (370)
T cd05596         156 DAIHS-MGFIHRDVKPDNMLLDKSG--------------------HLKLADFGTCMKMDANGMVRCDTAVGTPDYISPEV  214 (370)
T ss_pred             HHHHH-CCeeccCCCHHHEEEcCCC--------------------CEEEEeccceeeccCCCcccCCCCCCCcCeECHHH
Confidence            99999 9999999999999999987                    799999999987643321      22344889998


Q ss_pred             CCCCC----CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc--cCCCCCccchHHHHHHHHHhcccc----
Q 013230          358 FSGPK----GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK--KTFDRSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       358 f~g~~----~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~--~~~~~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      +.+..    ...+.|+|+ +|++.++++.|..||...........++...  ..++....++.++++||++||+.+    
T Consensus       215 ~~~~~~~~~~~~~~DiwS-lGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~r~  293 (370)
T cd05596         215 LKSQGGDGYYGRECDWWS-VGVFLYEMLVGDTPFYADSLVGTYSKIMDHKNSLTFPDDIEISKQAKDLICAFLTDREVRL  293 (370)
T ss_pred             hccCCCCCCCCCceeeee-hhHHHHHHHhCCCCcCCCCHHHHHHHHHcCCCcCCCCCcCCCCHHHHHHHHHHccChhhcc
Confidence            86532    345669999 9999999999999997655444444444322  234444467999999999999866    


Q ss_pred             ---CHHHHHcCCCCCCC
Q 013230          428 ---SAKEAIFDPFFSDL  441 (447)
Q Consensus       428 ---sa~elL~HPff~~~  441 (447)
                         |++|+++||||++.
T Consensus       294 ~R~s~~ell~h~~~~~~  310 (370)
T cd05596         294 GRNGVDEIKSHPFFKND  310 (370)
T ss_pred             CCCCHHHHhcCcccCCC
Confidence               89999999999864

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=7.5e-37  Score=285.14  Aligned_cols=223  Identities=20%  Similarity=0.233  Sum_probs=189.2

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+++++||+|+||+||++..      +|.|.|....      .+.+..+.+..|+.+|++|+|        ||    ||+
T Consensus        21 y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~------md~k~rq~~v~Ei~lLkQL~H--------pN----IVq   82 (375)
T KOG0591|consen   21 YQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGM------MDAKARQDCVKEISLLKQLNH--------PN----IVQ   82 (375)
T ss_pred             HHHHHHHcCCcchheEEeeeccCcchhhhhhcchhh------ccHHHHHHHHHHHHHHHhcCC--------ch----HHH
Confidence            49999999999999999984      8899887443      455667889999999999999        99    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCc-eEEEEEEecCccchhhhhc--------CCHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQ-RYIVFVLQHGGKDLESFVL--------LNINEARSLLVQ  278 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Q  278 (447)
                      +++.-                             +..+++ ++||||||.+| ||.++++        +++..++.++.|
T Consensus        83 Yy~~~-----------------------------f~~~~evlnivmE~c~~G-DLsqmIk~~K~qkr~ipE~~Vwk~f~Q  132 (375)
T KOG0591|consen   83 YYAHS-----------------------------FIEDNEVLNIVMELCDAG-DLSQMIKHFKKQKRLIPEKTVWKYFVQ  132 (375)
T ss_pred             HHHHh-----------------------------hhccchhhHHHHHhhccc-CHHHHHHHHHhccccCchHHHHHHHHH
Confidence            99851                             112334 89999999999 9999987        999999999999


Q ss_pred             HHHHHHHHHH---hCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEe
Q 013230          279 VTAGLAVAEA---AYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLD  350 (447)
Q Consensus       279 il~gL~ylH~---~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~  350 (447)
                      ++.||.++|.   ..-|+||||||.||+|+.++                    .|||+||||+|.....     ..+.+.
T Consensus       133 L~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~g--------------------vvKLGDfGL~r~l~s~~tfA~S~VGTP  192 (375)
T KOG0591|consen  133 LCRALYHCHSKIPRGTVMHRDIKPANIFLTANG--------------------VVKLGDFGLGRFLSSKTTFAHSLVGTP  192 (375)
T ss_pred             HHHHHHHHhccccccceeeccCcchheEEcCCC--------------------ceeeccchhHhHhcchhHHHHhhcCCC
Confidence            9999999996   23489999999999999998                    7999999999987665     335677


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCC-CC-ccchHHHHHHHHHhcccc
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFD-RS-SKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~-~~-~~~s~~l~dLl~~mL~~d  427 (447)
                      .||.||...+..++..+|||+ +|++.++|..-..||....+...-.++- + ..+| .| ..+|.+++.||..|+..|
T Consensus       193 yYMSPE~i~~~~Y~~kSDiWs-lGCllyEMcaL~~PF~g~n~~~L~~KI~-q-gd~~~~p~~~YS~~l~~li~~ci~vd  268 (375)
T KOG0591|consen  193 YYMSPERIHESGYNFKSDIWS-LGCLLYEMCALQSPFYGDNLLSLCKKIE-Q-GDYPPLPDEHYSTDLRELINMCIAVD  268 (375)
T ss_pred             cccCHHHHhcCCCCcchhHHH-HHHHHHHHHhcCCCcccccHHHHHHHHH-c-CCCCCCcHHHhhhHHHHHHHHHccCC
Confidence            799999999999999999999 9999999999999999876655544444 2 3444 45 568999999999999999

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=1.5e-34  Score=288.40  Aligned_cols=239  Identities=20%  Similarity=0.195  Sum_probs=191.0

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||+|+||.||+|++      +|+|++.....     ........+.+|+.+++.++|        +|    |+
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~e~~i~~~~~~--------~~----i~   64 (330)
T cd05601           2 DFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVL-----LAQETVSFFEEERDILSISNS--------PW----IP   64 (330)
T ss_pred             CceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHh-----hhhhHHHHHHHHHHHHHhCCC--------CC----Cc
Confidence            469999999999999999973      99999875421     122334567889999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      ++++++..                              .+.+|+||||+.+| +|.+++.     +++..++.++.||+.
T Consensus        65 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~l~~~~~~~~~~qi~~  113 (330)
T cd05601          65 QLQYAFQD------------------------------KDNLYLVMEYQPGG-DLLSLLNRYEDQFDEDMAQFYLAELVL  113 (330)
T ss_pred             ceeeEEec------------------------------CCeEEEEECCCCCC-CHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            99887532                              56799999999988 9999875     899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE------EEecCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF------FLDLSQDP  355 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i------~~~~~~~p  355 (447)
                      ||.|||+ .||+||||||+|||++.++                    .+||+|||+|+.....+..      ....|++|
T Consensus       114 aL~~lH~-~~i~H~Dlkp~NIll~~~~--------------------~~kL~Dfg~a~~~~~~~~~~~~~~~gt~~y~aP  172 (330)
T cd05601         114 AIHSVHQ-MGYVHRDIKPENVLIDRTG--------------------HIKLADFGSAARLTANKMVNSKLPVGTPDYIAP  172 (330)
T ss_pred             HHHHHHH-CCeEcccCchHheEECCCC--------------------CEEeccCCCCeECCCCCceeeecccCCccccCH
Confidence            9999999 9999999999999999887                    7999999999876544321      23348899


Q ss_pred             CCCCC------CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc--cCCCCCccchHHHHHHHHHhcccc
Q 013230          356 ELFSG------PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK--KTFDRSSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       356 elf~g------~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~--~~~~~~~~~s~~l~dLl~~mL~~d  427 (447)
                      |++.+      .....+.|||+ +|++.++++.|..|+...........++...  ..++....++.++++||++||. |
T Consensus       173 E~~~~~~~~~~~~~~~~~Diws-lG~il~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~ll~-~  250 (330)
T cd05601         173 EVLTTMNGDGKGTYGVECDWWS-LGVIAYEMIYGRSPFHEGTSAKTYNNIMNFQRFLKFPEDPKVSSDFLDLIQSLLC-G  250 (330)
T ss_pred             HHhccccccccCCCCCcceeec-ccceeeeeccCCCCCCCCCHHHHHHHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-C
Confidence            99863      33445679999 9999999999999987654444444433222  2344444689999999999998 7


Q ss_pred             -----CHHHHHcCCCCCCCC
Q 013230          428 -----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 -----sa~elL~HPff~~~~  442 (447)
                           |++++++||||+.+.
T Consensus       251 p~~R~t~~~l~~h~~~~~~~  270 (330)
T cd05601         251 QKERLGYEGLCCHPFFSKID  270 (330)
T ss_pred             hhhCCCHHHHhCCCCcCCCC
Confidence                 999999999998754

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=100.00  E-value=6.6e-36  Score=282.05  Aligned_cols=246  Identities=22%  Similarity=0.348  Sum_probs=191.7

Q ss_pred             CCcceEEeccccceEEEEec----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          133 DPENIVKVGEGTFGEAFLAG----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      .|+.++.||+|+||.||+|.          .+|+|.++-.+.      ....+..+.||+.+++.|+|        +|  
T Consensus        25 ~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd------~tGiS~SAcREiaL~REl~h--------~n--   88 (438)
T KOG0666|consen   25 EYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKD------GTGISMSACREIALLRELKH--------PN--   88 (438)
T ss_pred             HhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCC------CCCcCHHHHHHHHHHHHhcC--------Cc--
Confidence            45999999999999999994          288887764422      12344667999999999999        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------CCHHHHH
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------LNINEAR  273 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------l~~~~~~  273 (447)
                        +|.+..+|..                             .+..+++++||.+  .||.++|+         ++...++
T Consensus        89 --vi~Lv~Vfl~-----------------------------~d~~v~l~fdYAE--hDL~~II~fHr~~~~~~lp~~mvK  135 (438)
T KOG0666|consen   89 --VISLVKVFLS-----------------------------HDKKVWLLFDYAE--HDLWHIIKFHRASKAKQLPRSMVK  135 (438)
T ss_pred             --chhHHHHHhc-----------------------------cCceEEEEehhhh--hhHHHHHHHhccchhccCCHHHHH
Confidence              9999888643                             2567999999999  79999987         8999999


Q ss_pred             HHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---------
Q 013230          274 SLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---------  344 (447)
Q Consensus       274 ~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---------  344 (447)
                      +|+.||+.|+.|||+ +=|+||||||.|||+..++.               ..| .|||+|||+||....+         
T Consensus       136 silwQil~Gv~YLH~-NWvlHRDLKPaNIlvmgdgp---------------erG-~VKIaDlGlaR~~~~plkpl~s~d~  198 (438)
T KOG0666|consen  136 SILWQILDGVHYLHS-NWVLHRDLKPANILVMGDGP---------------ERG-RVKIADLGLARLFNNPLKPLASLDP  198 (438)
T ss_pred             HHHHHHHhhhHHHhh-hheeeccCCcceEEEeccCC---------------ccC-eeEeecccHHHHhhccccccccCCc
Confidence            999999999999999 99999999999999999852               123 7999999999987654         


Q ss_pred             ----------------------------CEEEEecCCCCCCCCCCCCC---------chH-HHHHhhccCCcccccCC--
Q 013230          345 ----------------------------DIFFLDLSQDPELFSGPKGD---------KQF-DTYRKMKKVTEDQWEGS--  384 (447)
Q Consensus       345 ----------------------------g~i~~~~~~~pelf~g~~~~---------~~~-di~s~lg~~~~~~~~~~--  384 (447)
                                                  ||||+|+++..++|.|....         +|+ .|+..+|.++...|+..  
T Consensus       199 VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g~E~k~~~~~Pfq~dQl~rIf~vLG~Pt~~~Wp~lkk  278 (438)
T KOG0666|consen  199 VVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKGREEKIKTKNPFQHDQLDRIFEVLGTPTDKDWPDLKK  278 (438)
T ss_pred             eEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccchhhhcccCCCchHHHHHHHHHHcCCCccccchhhhh
Confidence                                        89999999999999775332         445 68999999999999886  


Q ss_pred             CCCChhHHHHHHHHHHhh---ccCCCCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          385 FPKTNVLWLVYLVDMLLL---KKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       385 ~p~~~~~~~~~~~~~l~~---~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                      .|.+......+.......   ...+...+.-++.+.|||.+||.+|     ||+++|+|+||+....+
T Consensus       279 ~Pe~q~~ls~f~~~~~~n~sL~~~~~~~k~k~~~a~~LL~klL~yDP~kRIta~qAleh~yF~~d~lp  346 (438)
T KOG0666|consen  279 MPEYQTLLSDFRRHYYDNVSLHKYYHKHKVKDPSALDLLQKLLTYDPIKRITAEQALEHPYFTEDPLP  346 (438)
T ss_pred             CcchHHHHHHhHHhhcCcchHHHHHHHhcCCCchHHHHHHHHhccCchhhccHHHHhcccccccCCCC
Confidence            566533222222111100   0111112334566999999999999     99999999999976443

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=1.9e-34  Score=287.19  Aligned_cols=234  Identities=21%  Similarity=0.226  Sum_probs=189.2

Q ss_pred             eEEeccccceEEEEece---------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          137 IVKVGEGTFGEAFLAGN---------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       137 ~~~LG~G~fG~V~~a~~---------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      ++.||+|+||.||+|++         ||+|++......    ........+.+|+.+++.++|        ||    |++
T Consensus         1 ~~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~----~~~~~~~~~~~E~~il~~l~h--------p~----iv~   64 (323)
T cd05584           1 LKVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIV----RNQKDTAHTKAERNILEAVKH--------PF----IVD   64 (323)
T ss_pred             CceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHH----hhhhhHHHHHHHHHHHHhCCC--------Cc----hhc
Confidence            36899999999999862         999988743210    112233567889999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++..                              ++.+|+||||+.|| +|.+++.    +++..++.++.||+.||
T Consensus        65 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~qi~~~l  113 (323)
T cd05584          65 LIYAFQT------------------------------GGKLYLILEYLSGG-ELFMHLEREGIFMEDTACFYLSEISLAL  113 (323)
T ss_pred             eeeEEec------------------------------CCeEEEEEeCCCCc-hHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            9988643                              56699999999988 9988875    78999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----EEEecCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----FFLDLSQDPELF  358 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i~~~~~~~pelf  358 (447)
                      +|||+ +||+||||||+|||++.++                    .+||+|||+++.....+.     .....|++||.+
T Consensus       114 ~~lH~-~~ivH~dlkp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~  172 (323)
T cd05584         114 EHLHQ-QGIIYRDLKPENILLDAQG--------------------HVKLTDFGLCKESIHEGTVTHTFCGTIEYMAPEIL  172 (323)
T ss_pred             HHHHH-CCeecCCCCHHHeEECCCC--------------------CEEEeeCcCCeecccCCCcccccCCCccccChhhc
Confidence            99999 9999999999999999887                    799999999875433221     123448999999


Q ss_pred             CCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----------C
Q 013230          359 SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----------S  428 (447)
Q Consensus       359 ~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----------s  428 (447)
                      .+.....+.|||+ +|++.++++.|..|+...........+..  ..++.+...++++++||++||+.|          +
T Consensus       173 ~~~~~~~~~Diws-lG~il~ell~G~~pf~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~  249 (323)
T cd05584         173 MRSGHGKAVDWWS-LGALMYDMLTGAPPFTAENRKKTIDKILK--GKLNLPPYLTPEARDLLKKLLKRNPSSRLGAGPGD  249 (323)
T ss_pred             cCCCCCCcceecc-cHHHHHHHhcCCCCCCCCCHHHHHHHHHc--CCCCCCCCCCHHHHHHHHHHcccCHhHcCCCCCCC
Confidence            8877777789999 99999999999999876555444444443  334445668999999999999999          6


Q ss_pred             HHHHHcCCCCCCC
Q 013230          429 AKEAIFDPFFSDL  441 (447)
Q Consensus       429 a~elL~HPff~~~  441 (447)
                      ++++++||||+..
T Consensus       250 ~~~l~~h~~~~~~  262 (323)
T cd05584         250 AAEVQSHPFFRHV  262 (323)
T ss_pred             HHHHhcCCCcCCC
Confidence            9999999999864

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=3e-34  Score=285.71  Aligned_cols=239  Identities=17%  Similarity=0.159  Sum_probs=189.2

Q ss_pred             CCcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|+      .+|+|++.....     ...........|..++..+.|  |     ++    |+
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~e~~~l~~~~~--~-----~~----i~   64 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVV-----IQDDDVECTMVEKRVLALSGK--P-----PF----LT   64 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHh-----hhhhHHHHHHHHHHHHHhccC--C-----Ce----Ee
Confidence            46899999999999999997      399999875421     112233456778888877754  1     44    88


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      .+++++..                              .+.+|+||||+.+| +|..++.    +++..++.++.||+.|
T Consensus        65 ~~~~~~~~------------------------------~~~~~lv~E~~~~g-~L~~~~~~~~~~~~~~~~~~~~qi~~a  113 (323)
T cd05616          65 QLHSCFQT------------------------------MDRLYFVMEYVNGG-DLMYQIQQVGRFKEPHAVFYAAEIAIG  113 (323)
T ss_pred             eEEEEEec------------------------------CCEEEEEEcCCCCC-CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            88888533                              56799999999988 8988775    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pel  357 (447)
                      |+|||+ +||+||||||+|||++.++                    .+||+|||+++.....+     ......|++||.
T Consensus       114 L~~LH~-~~ivHrDlkp~Nill~~~~--------------------~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~  172 (323)
T cd05616         114 LFFLHS-KGIIYRDLKLDNVMLDSEG--------------------HIKIADFGMCKENMWDGVTTKTFCGTPDYIAPEI  172 (323)
T ss_pred             HHHHHH-CCEEecCCCHHHeEECCCC--------------------cEEEccCCCceecCCCCCccccCCCChhhcCHHH
Confidence            999999 9999999999999999987                    79999999998643221     112345899999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C----
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S----  428 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s----  428 (447)
                      +.+...+.+.|+|+ +|++.+++++|..|+...........+..  .....+...+.++++|+++||+.|     +    
T Consensus       173 ~~~~~~~~~~DiwS-lGvil~elltg~~Pf~~~~~~~~~~~i~~--~~~~~p~~~s~~~~~li~~~l~~~p~~R~~~~~~  249 (323)
T cd05616         173 IAYQPYGKSVDWWA-FGVLLYEMLAGQAPFEGEDEDELFQSIME--HNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPE  249 (323)
T ss_pred             hcCCCCCCccchhc-hhHHHHHHHhCCCCCCCCCHHHHHHHHHh--CCCCCCCcCCHHHHHHHHHHcccCHHhcCCCCCC
Confidence            98877777889999 99999999999999876544443444432  233334568999999999999999     3    


Q ss_pred             -HHHHHcCCCCCCCC
Q 013230          429 -AKEAIFDPFFSDLI  442 (447)
Q Consensus       429 -a~elL~HPff~~~~  442 (447)
                       ..++++||||+.+.
T Consensus       250 ~~~~i~~h~~~~~~~  264 (323)
T cd05616         250 GERDIKEHAFFRYID  264 (323)
T ss_pred             CHHHHhcCCCcCCCC
Confidence             58999999998764

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=2.5e-34  Score=286.99  Aligned_cols=239  Identities=20%  Similarity=0.198  Sum_probs=185.3

Q ss_pred             CCcceEEeccccceEEEEece---------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN---------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACT  203 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~---------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~  203 (447)
                      +|++++.||+|+||.||+|++         +|+|++......    ......+.+.+|+.+++.+++  |     +|   
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~----~~~~~~~~~~~e~~~l~~l~~--~-----~~---   66 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALV----QKAKTVEHTRTERNVLEHVRQ--S-----PF---   66 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHh----hhhhHHHHHHHHHHHHHhccC--C-----CC---
Confidence            368999999999999998763         899988743210    122234567889999999864  1     55   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHH
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQV  279 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qi  279 (447)
                       |+++++++..                              ++.+|+||||+.+| +|.+++.    +++..++.++.||
T Consensus        67 -i~~~~~~~~~------------------------------~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~~~qi  114 (332)
T cd05614          67 -LVTLHYAFQT------------------------------EAKLHLILDYVSGG-EMFTHLYQRDNFSEDEVRFYSGEI  114 (332)
T ss_pred             -cccEEEEEec------------------------------CCEEEEEEeCCCCC-cHHHHHHHcCCCCHHHHHHHHHHH
Confidence             9999888533                              56799999999988 8888775    8999999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------CEEEEecCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------DIFFLDLSQ  353 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g~i~~~~~~  353 (447)
                      +.||+|||+ +||+||||||+|||++.++                    .+||+|||+++.....      .......|+
T Consensus       115 ~~~l~~lH~-~~ivHrDlkp~Nili~~~~--------------------~~kl~DfG~~~~~~~~~~~~~~~~~gt~~y~  173 (332)
T cd05614         115 ILALEHLHK-LGIVYRDIKLENILLDSEG--------------------HVVLTDFGLSKEFLSEEKERTYSFCGTIEYM  173 (332)
T ss_pred             HHHHHHHHH-CCcEecCCCHHHeEECCCC--------------------CEEEeeCcCCccccccCCCccccccCCcccc
Confidence            999999999 9999999999999999987                    7999999999864322      112234589


Q ss_pred             CCCCCCCCC-CCchHHHHHhhccCCcccccCCCCCChh----HHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-
Q 013230          354 DPELFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNV----LWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-  427 (447)
Q Consensus       354 ~pelf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~----~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-  427 (447)
                      +||.+.+.. .....|||+ +|++.+++++|..|+...    ..........  ....+.+..+++++++||++||..| 
T Consensus       174 aPE~~~~~~~~~~~~Diws-lG~il~elltg~~pf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~l~~dp  250 (332)
T cd05614         174 APEIIRGKGGHGKAVDWWS-LGILIFELLTGASPFTLEGERNTQSEVSRRIL--KCDPPFPSFIGPEAQDLLHKLLRKDP  250 (332)
T ss_pred             CHHHhcCCCCCCCcccccc-chhhhhhhhcCCCCCCCCCCCCCHHHHHHHHh--cCCCCCCCCCCHHHHHHHHHHcCCCH
Confidence            999987754 445569999 999999999999998421    1111122222  2233344568999999999999999 


Q ss_pred             ---------CHHHHHcCCCCCCC
Q 013230          428 ---------SAKEAIFDPFFSDL  441 (447)
Q Consensus       428 ---------sa~elL~HPff~~~  441 (447)
                               +++++++||||++.
T Consensus       251 ~~R~~~~~~~~~~~l~h~~~~~~  273 (332)
T cd05614         251 KKRLGAGPQGASEIKEHPFFKGL  273 (332)
T ss_pred             HHcCCCCCCCHHHHHcCCCcCCC
Confidence                     68899999999875

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=3.5e-34  Score=279.27  Aligned_cols=235  Identities=22%  Similarity=0.239  Sum_probs=182.7

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|++      +|+|++.....      .....+.+.+|+.+++.++|        +|    |+
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~------~~~~~~~~~~E~~~l~~l~h--------~~----iv   63 (287)
T cd07848           2 KFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEE------NEEVKETTLRELKMLRTLKQ--------EN----IV   63 (287)
T ss_pred             CceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccc------cccchhhHHHHHHHHHhCCC--------cc----cc
Confidence            469999999999999999974      89998875421      22334667899999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              ++.+|+||||+.+| .+..+..    +++..++.++.||+.|
T Consensus        64 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~l~~~~~~~~~~~~~~~~~~~~qi~~~  112 (287)
T cd07848          64 ELKEAFRR------------------------------RGKLYLVFEYVEKN-MLELLEEMPNGVPPEKVRSYIYQLIKA  112 (287)
T ss_pred             chhhhEec------------------------------CCEEEEEEecCCCC-HHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            99988533                              56799999999976 6665543    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------EEEEecCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------IFFLDLSQDPE  356 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------~i~~~~~~~pe  356 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+|+......      ......|++||
T Consensus       113 L~~lH~-~~i~H~dlkp~Nill~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE  171 (287)
T cd07848         113 IHWCHK-NDIVHRDIKPENLLISHND--------------------VLKLCDFGFARNLSEGSNANYTEYVATRWYRSPE  171 (287)
T ss_pred             HHHHHH-CCeecCCCCHHHEEEcCCC--------------------cEEEeeccCcccccccccccccccccccccCCcH
Confidence            999999 9999999999999999887                    79999999998754321      12234489999


Q ss_pred             CCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHH--------------hhc-----cCCCC---------
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDML--------------LLK-----KTFDR---------  408 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l--------------~~~-----~~~~~---------  408 (447)
                      .+.+...+...|+|+ +|++.++++.|..|+........+....              ...     ..++.         
T Consensus       172 ~~~~~~~~~~~Diws-lGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (287)
T cd07848         172 LLLGAPYGKAVDMWS-VGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNHPQSLER  250 (287)
T ss_pred             HHcCCCCCCchhHHh-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhCCCCHHHHHhhhccchhcccccCcccCcccHHH
Confidence            998877777789999 9999999999998875432111111100              000     00111         


Q ss_pred             --CccchHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          409 --SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       409 --~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                        ....+.+++|||++||++|     |++|+|+||||
T Consensus       251 ~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~hp~f  287 (287)
T cd07848         251 RYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLNHPAF  287 (287)
T ss_pred             hhhcccCHHHHHHHHHHccCCcccCCCHHHHhcCCCC
Confidence              1136788999999999999     99999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=2.4e-34  Score=287.54  Aligned_cols=240  Identities=18%  Similarity=0.167  Sum_probs=188.3

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|++      ||+|++.....     ........+.+|+.++..++|        +|    |+
T Consensus         2 ~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~e~~~l~~~~~--------~~----i~   64 (331)
T cd05624           2 DFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEM-----LKRAETACFREERNVLVNGDC--------QW----IT   64 (331)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHH-----HhhHHHHHHHHHHHHHHhCCC--------CC----Ee
Confidence            469999999999999999973      89998864311     112233457788999998887        77    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      .+++++..                              ++..|+||||+.|| +|.+++.     +++..++.++.|++.
T Consensus        65 ~l~~~~~~------------------------------~~~~~lv~Ey~~gg-~L~~~l~~~~~~l~~~~~~~~~~qi~~  113 (331)
T cd05624          65 TLHYAFQD------------------------------ENYLYLVMDYYVGG-DLLTLLSKFEDRLPEDMARFYIAEMVL  113 (331)
T ss_pred             eEEEEEEc------------------------------CCEEEEEEeCCCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            99988542                              56799999999988 9998875     789999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE------EEEecCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI------FFLDLSQDP  355 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~------i~~~~~~~p  355 (447)
                      ||+|||+ +||+||||||+|||++.++                    .+||+|||+|+.....+.      .....|++|
T Consensus       114 ~L~~lH~-~~iiHrDlkp~Nill~~~~--------------------~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aP  172 (331)
T cd05624         114 AIHSIHQ-LHYVHRDIKPDNVLLDMNG--------------------HIRLADFGSCLKMNQDGTVQSSVAVGTPDYISP  172 (331)
T ss_pred             HHHHHHH-CCeeeccCchHHEEEcCCC--------------------CEEEEeccceeeccCCCceeeccccCCcccCCH
Confidence            9999999 9999999999999999887                    799999999987654321      123348899


Q ss_pred             CCCCC-----CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC---CccchHHHHHHHHHhcccc
Q 013230          356 ELFSG-----PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR---SSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       356 elf~g-----~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~---~~~~s~~l~dLl~~mL~~d  427 (447)
                      |.+.+     .....+.|+|+ +|++.++++.|..|+...........+......++.   ...++.++++||.+||..+
T Consensus       173 E~~~~~~~~~~~~~~~~DiwS-lGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~li~~ll~~~  251 (331)
T cd05624         173 EILQAMEDGMGKYGPECDWWS-LGVCMYEMLYGETPFYAESLVETYGKIMNHEERFQFPSHITDVSEEAKDLIQRLICSR  251 (331)
T ss_pred             HHHhccccCCCCCCCcccEEe-eehhhhhhhhCCCCccCCCHHHHHHHHHcCCCcccCCCccccCCHHHHHHHHHHccCc
Confidence            98865     23445669999 999999999999998765443333343322222222   2346899999999999866


Q ss_pred             -------CHHHHHcCCCCCCCC
Q 013230          428 -------SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 -------sa~elL~HPff~~~~  442 (447)
                             +++++++||||+...
T Consensus       252 ~~~~~~~~~~~~~~h~~f~~~~  273 (331)
T cd05624         252 ERRLGQNGIEDFKKHAFFEGID  273 (331)
T ss_pred             hhhcCCCCHHHHhcCCCcCCCC
Confidence                   799999999998753

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=9.7e-37  Score=286.35  Aligned_cols=233  Identities=18%  Similarity=0.255  Sum_probs=199.0

Q ss_pred             cceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      .++++||+|+||.||+|.+      +|+|.|+++.          ..+++.+||.||++++.        +.    +|++
T Consensus        36 Di~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~s----------DLQEIIKEISIMQQC~S--------~y----VVKY   93 (502)
T KOG0574|consen   36 DIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDT----------DLQEIIKEISIMQQCKS--------KY----VVKY   93 (502)
T ss_pred             HHHHHhcCCcchHHHHHHHhccCcEEEEEecCccc----------hHHHHHHHHHHHHHcCC--------ch----hhhh
Confidence            5669999999999999974      9999999764          34778999999999987        66    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~gL  283 (447)
                      |+.|                              |....+|||||||-.| +..++++     ++++++..+++..+.||
T Consensus        94 YGSY------------------------------FK~sDLWIVMEYCGAG-SiSDI~R~R~K~L~E~EIs~iL~~TLKGL  142 (502)
T KOG0574|consen   94 YGSY------------------------------FKHSDLWIVMEYCGAG-SISDIMRARRKPLSEQEISAVLRDTLKGL  142 (502)
T ss_pred             hhhh------------------------------ccCCceEeehhhcCCC-cHHHHHHHhcCCccHHHHHHHHHHHHhHH
Confidence            9984                              3467799999999988 9999887     99999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPELF  358 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pelf  358 (447)
                      +|||. ..-||||||.+|||+..++                    ..||+|||+|...++.     ..+...++|+||+.
T Consensus       143 ~YLH~-~~KIHRDIKAGNILLNT~G--------------------~AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI  201 (502)
T KOG0574|consen  143 QYLHD-LKKIHRDIKAGNILLNTDG--------------------IAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI  201 (502)
T ss_pred             HHHHH-HHHHHhhcccccEEEcccc--------------------hhhhhhccccchhhhhHHhhCccccCcccccHHHH
Confidence            99999 8899999999999999998                    8999999999876543     56778889999999


Q ss_pred             CCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh-hccCCCCCccchHHHHHHHHHhcccc-----CHHHH
Q 013230          359 SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL-LKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEA  432 (447)
Q Consensus       359 ~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~-~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~el  432 (447)
                      ..-.++...|||+ +|...-+|..|..|+.+...++.+.-+-. ..+.|..+..+|.++-||+++||.+.     ||-++
T Consensus       202 ~EIGY~~~ADIWS-LGITaIEMAEG~PPYsDIHPMRAIFMIPT~PPPTF~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L  280 (502)
T KOG0574|consen  202 EEIGYDTKADIWS-LGITAIEMAEGRPPYSDIHPMRAIFMIPTKPPPTFKKPEEWSSEFNDFIRSCLIKKPEERKTALRL  280 (502)
T ss_pred             HHhccchhhhHhh-hcchhhhhhcCCCCcccccccceeEeccCCCCCCCCChHhhhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence            8766777779999 99999999999999887544433322222 12456667889999999999999999     99999


Q ss_pred             HcCCCCCCCC
Q 013230          433 IFDPFFSDLI  442 (447)
Q Consensus       433 L~HPff~~~~  442 (447)
                      ++|||.++..
T Consensus       281 ~~H~FiknA~  290 (502)
T KOG0574|consen  281 CEHTFIKNAP  290 (502)
T ss_pred             hhhhhhcCCC
Confidence            9999998754

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=2e-34  Score=292.83  Aligned_cols=239  Identities=20%  Similarity=0.181  Sum_probs=191.6

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|++      +|+|++.....     ........+.+|+.+++.++|        ||    |+
T Consensus        44 ~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~-----~~~~~~~~~~~e~~i~~~~~h--------p~----iv  106 (371)
T cd05622          44 DYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEM-----IKRSDSAFFWEERDIMAFANS--------PW----VV  106 (371)
T ss_pred             hcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHh-----hhhHHHHHHHHHHHHHHhCCC--------CC----CC
Confidence            459999999999999999974      89998864321     122233457889999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGL  283 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL  283 (447)
                      ++++++..                              .+.+|+||||+.|| +|.+++.   +++..++.++.||+.||
T Consensus       107 ~~~~~~~~------------------------------~~~~~lv~Ey~~gg-~L~~~~~~~~~~~~~~~~~~~qi~~aL  155 (371)
T cd05622         107 QLFYAFQD------------------------------DRYLYMVMEYMPGG-DLVNLMSNYDVPEKWARFYTAEVVLAL  155 (371)
T ss_pred             eEEEEEEc------------------------------CCEEEEEEcCCCCC-cHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            99988543                              56799999999988 9998886   89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------EEEEecCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------IFFLDLSQDPEL  357 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------~i~~~~~~~pel  357 (447)
                      +|||+ +||+||||||+|||++.++                    .+||+|||+|+.....+      .+....|++||+
T Consensus       156 ~~LH~-~~ivHrDLkp~NIll~~~~--------------------~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~  214 (371)
T cd05622         156 DAIHS-MGFIHRDVKPDNMLLDKSG--------------------HLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEV  214 (371)
T ss_pred             HHHHH-CCEEeCCCCHHHEEECCCC--------------------CEEEEeCCceeEcCcCCcccccCcccCccccCHHH
Confidence            99999 9999999999999999887                    79999999998765432      123445899999


Q ss_pred             CCCCC----CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc--cCCCCCccchHHHHHHHHHhcccc----
Q 013230          358 FSGPK----GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK--KTFDRSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       358 f~g~~----~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~--~~~~~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      +.+..    ...+.|||+ +|++.+++..|..|+...........++...  ..++....++.++++||.+||..+    
T Consensus       215 l~~~~~~~~~~~~~DiwS-lGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~~~r~  293 (371)
T cd05622         215 LKSQGGDGYYGRECDWWS-VGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRL  293 (371)
T ss_pred             HhccCCCccCCCccceee-hhHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCcccCCCcCCCCHHHHHHHHHHcCChhhhc
Confidence            86543    345669999 9999999999999997655444444444322  234444568999999999999743    


Q ss_pred             ---CHHHHHcCCCCCCC
Q 013230          428 ---SAKEAIFDPFFSDL  441 (447)
Q Consensus       428 ---sa~elL~HPff~~~  441 (447)
                         +++|+++||||++.
T Consensus       294 ~r~~~~ei~~h~~~~~~  310 (371)
T cd05622         294 GRNGVEEIKRHLFFKND  310 (371)
T ss_pred             CCCCHHHHhcCcccCCC
Confidence               89999999999874

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=1.6e-34  Score=287.46  Aligned_cols=233  Identities=19%  Similarity=0.179  Sum_probs=185.9

Q ss_pred             EEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhcc-ccccCCCCCCCcccceeeeee
Q 013230          138 VKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN-HLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      +.||+|+||.||+|++      ||+|++.....     ......+....|+.++..+. |        ||    |+++++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~e~~~l~~~~~h--------~~----iv~~~~   63 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVI-----LQDDDVECTMTEKRILSLARNH--------PF----LTQLYC   63 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHH-----hhccHHHHHHHHHHHHHhccCC--------Cc----hhceee
Confidence            3699999999999973      99999875321     12223456778888888763 5        66    999999


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHH
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVA  286 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~yl  286 (447)
                      ++..                              .+.+|+||||+.|| +|..++.    +++..++.++.||+.||+||
T Consensus        64 ~~~~------------------------------~~~~~iv~Ey~~~g-~L~~~i~~~~~l~~~~~~~~~~ql~~~L~~l  112 (320)
T cd05590          64 CFQT------------------------------PDRLFFVMEFVNGG-DLMFHIQKSRRFDEARARFYAAEITSALMFL  112 (320)
T ss_pred             EEEc------------------------------CCEEEEEEcCCCCc-hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            8543                              56799999999988 9988775    89999999999999999999


Q ss_pred             HHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----EEEecCCCCCCCCCC
Q 013230          287 EAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----FFLDLSQDPELFSGP  361 (447)
Q Consensus       287 H~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i~~~~~~~pelf~g~  361 (447)
                      |+ .||+||||||+|||++.++                    .+||+|||+++.....+.     .....|++||.+.+.
T Consensus       113 H~-~~ivH~dlkp~NIli~~~~--------------------~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  171 (320)
T cd05590         113 HD-KGIIYRDLKLDNVLLDHEG--------------------HCKLADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQEM  171 (320)
T ss_pred             HH-CCeEeCCCCHHHeEECCCC--------------------cEEEeeCCCCeecCcCCCcccccccCccccCHHHHcCC
Confidence            99 9999999999999999987                    799999999886432221     123448999999887


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CH------H
Q 013230          362 KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SA------K  430 (447)
Q Consensus       362 ~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa------~  430 (447)
                      ......|+|+ +|++.+++..|..|+...........+..  .....+...+.++++||++||+.|     ++      +
T Consensus       172 ~~~~~~Diws-lG~il~el~~g~~Pf~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~  248 (320)
T cd05590         172 LYGPSVDWWA-MGVLLYEMLCGHAPFEAENEDDLFEAILN--DEVVYPTWLSQDAVDILKAFMTKNPTMRLGSLTLGGEE  248 (320)
T ss_pred             CCCCccchhh-hHHHHHHHhhCCCCCCCCCHHHHHHHHhc--CCCCCCCCCCHHHHHHHHHHcccCHHHCCCCCCCCCHH
Confidence            7777789999 99999999999999876544444444442  223334568999999999999999     65      9


Q ss_pred             HHHcCCCCCCCC
Q 013230          431 EAIFDPFFSDLI  442 (447)
Q Consensus       431 elL~HPff~~~~  442 (447)
                      ++++||||+.+.
T Consensus       249 ~~~~h~~f~~~~  260 (320)
T cd05590         249 AILRHPFFKELD  260 (320)
T ss_pred             HHHcCCCcCCCC
Confidence            999999998764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-34  Score=282.12  Aligned_cols=238  Identities=19%  Similarity=0.201  Sum_probs=198.7

Q ss_pred             CCcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||.|.-++||+|+      .||||++..++.       ....+.+.+|+..|..++|        ||    |+
T Consensus        27 ~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc-------~~~ld~l~kE~~~msl~~H--------PN----Iv   87 (516)
T KOG0582|consen   27 DYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKC-------NNDLDALRKEVQTMSLIDH--------PN----IV   87 (516)
T ss_pred             ceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhh-------hhhHHHHHHHHHHhhhcCC--------CC----cc
Confidence            45999999999999999998      399999998754       2236889999999999999        99    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVT  280 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil  280 (447)
                      +++-.|+.                              +..+|+||.||.+| ++.++++      +++..|..|+++++
T Consensus        88 ~~~~sFvv------------------------------~~~LWvVmpfMa~G-S~ldIik~~~~~Gl~E~~Ia~iLre~L  136 (516)
T KOG0582|consen   88 TYHCSFVV------------------------------DSELWVVMPFMAGG-SLLDIIKTYYPDGLEEASIATILREVL  136 (516)
T ss_pred             eEEEEEEe------------------------------cceeEEeehhhcCC-cHHHHHHHHccccccHHHHHHHHHHHH
Confidence            99999887                              67899999999999 9999987      99999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE---------EEEec
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI---------FFLDL  351 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~---------i~~~~  351 (447)
                      .||.|||. +|-||||||++||||+.+|                    .|||+|||.+......|.         +....
T Consensus       137 kaL~YLH~-~G~IHRdvKAgnILi~~dG--------------------~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~  195 (516)
T KOG0582|consen  137 KALDYLHQ-NGHIHRDVKAGNILIDSDG--------------------TVKLADFGVSASLFDSGDRQVTRFNTFVGTPC  195 (516)
T ss_pred             HHHHHHHh-cCceecccccccEEEcCCC--------------------cEEEcCceeeeeecccCceeeEeeccccCccc
Confidence            99999999 9999999999999999999                    799999999877655542         22334


Q ss_pred             CCCCCCC--CCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCC--------CCCccchHHHHHHHH
Q 013230          352 SQDPELF--SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTF--------DRSSKDERDLRSLKK  421 (447)
Q Consensus       352 ~~~pelf--~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~--------~~~~~~s~~l~dLl~  421 (447)
                      ||+||+.  +...++.+.|||+ +|+...++..|..||...-.++.+-..+.+....        ......+..++.++.
T Consensus       196 wmAPEvl~q~~~GYdfKaDIwS-fGITA~ELA~G~aPf~k~pPmkvLl~tLqn~pp~~~t~~~~~d~~k~~~ksf~e~i~  274 (516)
T KOG0582|consen  196 WMAPEVLMQQLHGYDFKADIWS-FGITACELAHGHAPFSKYPPMKVLLLTLQNDPPTLLTSGLDKDEDKKFSKSFREMIA  274 (516)
T ss_pred             ccChHHhhhcccCccchhhhhh-hhHHHHHHhcCCCCcccCChHHHHHHHhcCCCCCcccccCChHHhhhhcHHHHHHHH
Confidence            8888884  3334566679999 9999999999999998765555555555333221        113456789999999


Q ss_pred             Hhcccc-----CHHHHHcCCCCCCCC
Q 013230          422 RLDKYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       422 ~mL~~d-----sa~elL~HPff~~~~  442 (447)
                      .||++|     ||+++|+|+||+..-
T Consensus       275 ~CL~kDP~kRptAskLlkh~FFk~~k  300 (516)
T KOG0582|consen  275 LCLVKDPSKRPTASKLLKHAFFKKAK  300 (516)
T ss_pred             HHhhcCcccCCCHHHHhccHHHhhcc
Confidence            999999     999999999998653

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.6e-34  Score=286.31  Aligned_cols=240  Identities=19%  Similarity=0.188  Sum_probs=188.0

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|+.      ||+|++.....     ........+.+|+.+++.++|        +|    |+
T Consensus         2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~e~~~l~~~~~--------~~----i~   64 (331)
T cd05597           2 DFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEM-----LKRAETACFREERDVLVNGDR--------RW----IT   64 (331)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHH-----hhhhhHHHHHHHHHHHHhCCC--------CC----CC
Confidence            569999999999999999973      99999874211     122233557889999999988        77    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      .+++++..                              ++.+|+||||+.|| +|.+++.     +++..++.++.||+.
T Consensus        65 ~~~~~~~~------------------------------~~~~~lv~e~~~g~-~L~~~l~~~~~~~~~~~~~~~~~qi~~  113 (331)
T cd05597          65 NLHYAFQD------------------------------ENNLYLVMDYYVGG-DLLTLLSKFEDRLPEDMARFYLAEMVL  113 (331)
T ss_pred             ceEEEEec------------------------------CCeEEEEEecCCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            99988543                              56799999999988 9998874     899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------EEEEecCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------IFFLDLSQDP  355 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------~i~~~~~~~p  355 (447)
                      ||+|||+ .||+||||||+|||++.++                    .+||+|||+++.....+      ......|++|
T Consensus       114 ~l~~lH~-~~ivH~dlkp~Nill~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aP  172 (331)
T cd05597         114 AIDSVHQ-LGYVHRDIKPDNVLLDKNG--------------------HIRLADFGSCLRLLADGTVQSNVAVGTPDYISP  172 (331)
T ss_pred             HHHHHHh-CCeEECCCCHHHEEECCCC--------------------CEEEEECCceeecCCCCCccccceeccccccCH
Confidence            9999999 9999999999999999887                    79999999997654332      1233458999


Q ss_pred             CCCCC-----CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC---CccchHHHHHHHHHhcccc
Q 013230          356 ELFSG-----PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR---SSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       356 elf~g-----~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~---~~~~s~~l~dLl~~mL~~d  427 (447)
                      |++.+     .....+.|+|+ +|++.++++.|..|+...........+......++.   ...++.++++||++||..+
T Consensus       173 E~~~~~~~~~~~~~~~~Diws-lG~~l~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~li~~ll~~~  251 (331)
T cd05597         173 EILQAMEDGKGRYGPECDWWS-LGVCMYEMLYGETPFYAESLVETYGKIMNHKEHFQFPPDVTDVSEEAKDLIRRLICSP  251 (331)
T ss_pred             HHHhhccccccCCCCcceeeh-hhhHHHHHhhCCCCCCCCCHHHHHHHHHcCCCcccCCCccCCCCHHHHHHHHHHccCc
Confidence            99863     22345669999 999999999999998765443333333322222222   2347899999999999765


Q ss_pred             -------CHHHHHcCCCCCCCC
Q 013230          428 -------SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 -------sa~elL~HPff~~~~  442 (447)
                             +++++++||||.+..
T Consensus       252 ~~r~~r~~~~~~l~hp~~~~~~  273 (331)
T cd05597         252 ETRLGRNGLQDFKDHPFFEGID  273 (331)
T ss_pred             ccccCCCCHHHHhcCCCCCCCC
Confidence                   899999999998753

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=8.4e-34  Score=283.52  Aligned_cols=240  Identities=17%  Similarity=0.170  Sum_probs=189.2

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|++      +|+|++....       .......+.+|+.+++.++|        ||    |+
T Consensus         6 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------~~----iv   66 (331)
T cd06649           6 DFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEI-------KPAIRNQIIRELQVLHECNS--------PY----IV   66 (331)
T ss_pred             cceEEEeecCCCCEEEEEEEECCCCcEEEEEEeeccc-------CHHHHHHHHHHHHHHHHCCC--------CC----CC
Confidence            569999999999999999984      8899887431       22334678999999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              ++.+|+||||+.+| +|.+++.    +++..++.++.|++.|
T Consensus        67 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~i~~~  115 (331)
T cd06649          67 GFYGAFYS------------------------------DGEISICMEHMDGG-SLDQVLKEAKRIPEEILGKVSIAVLRG  115 (331)
T ss_pred             eEEEEEEE------------------------------CCEEEEEeecCCCC-cHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            99998654                              56699999999988 9999886    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---CEEEEecCCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---DIFFLDLSQDPELFS  359 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---g~i~~~~~~~pelf~  359 (447)
                      |.|||+..+|+||||||+|||++.++                    .+||+|||+++.....   .......|++||.+.
T Consensus       116 l~~lH~~~~ivH~dlkp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~g~~~y~aPE~~~  175 (331)
T cd06649         116 LAYLREKHQIMHRDVKPSNILVNSRG--------------------EIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQ  175 (331)
T ss_pred             HHHHhhcCCEEcCCCChhhEEEcCCC--------------------cEEEccCcccccccccccccCCCCcCcCCHhHhc
Confidence            99999834799999999999999987                    7999999999765332   122334589999999


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHH-------------------------------------------
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYL-------------------------------------------  396 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~-------------------------------------------  396 (447)
                      +...+.+.|+|+ +|++.+++++|..|+.........                                           
T Consensus       176 ~~~~~~~~Diws-lG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (331)
T cd06649         176 GTHYSVQSDIWS-MGLSLVELAIGRYPIPPPDAKELEAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHGMDSRPAMAIF  254 (331)
T ss_pred             CCCCCchHhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccccCCccccCcccccccccccccccccccchhHH
Confidence            877788889999 999999999999888543211110                                           


Q ss_pred             --HHHHhhccCCC-CCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          397 --VDMLLLKKTFD-RSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       397 --~~~l~~~~~~~-~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                        ...+....... .....++++++||++||++|     |++|+++||||+....
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rpt~~ell~h~~~~~~~~  309 (331)
T cd06649         255 ELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLKMLMNHTFIKRSEV  309 (331)
T ss_pred             HHHHHHHhCCCcCCCCccccHHHHHHHHHHccCCcccCCCHHHHhcChHHhhccc
Confidence              00000000011 11246889999999999999     9999999999987644

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=4.8e-34  Score=296.42  Aligned_cols=242  Identities=19%  Similarity=0.204  Sum_probs=181.1

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|+++++||+|+||.||+|.+      ||+|++....            ....+|+.+|+.++|        +|    ||
T Consensus        67 ~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~------------~~~~~Ei~il~~l~h--------~n----iv  122 (440)
T PTZ00036         67 SYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP------------QYKNRELLIMKNLNH--------IN----II  122 (440)
T ss_pred             eEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc------------chHHHHHHHHHhcCC--------CC----Cc
Confidence            359999999999999999973      9999875321            123579999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQ  278 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Q  278 (447)
                      +++++|.......                      ......+++||||+. | +|.+++.        +++..++.++.|
T Consensus       123 ~l~~~~~~~~~~~----------------------~~~~~~l~lvmE~~~-~-~l~~~~~~~~~~~~~l~~~~~~~~~~q  178 (440)
T PTZ00036        123 FLKDYYYTECFKK----------------------NEKNIFLNVVMEFIP-Q-TVHKYMKHYARNNHALPLFLVKLYSYQ  178 (440)
T ss_pred             ceeeeEeeccccc----------------------CCCceEEEEEEecCC-c-cHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence            9999875422100                      011234789999998 4 5655542        889999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCC
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQD  354 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~  354 (447)
                      |+.||+|||+ .||+||||||+|||++.++.                   .+||+|||+|+.....    +.+....|++
T Consensus       179 i~~gL~yLH~-~~IiHrDLKp~NILl~~~~~-------------------~vkL~DFGla~~~~~~~~~~~~~~t~~y~a  238 (440)
T PTZ00036        179 LCRALAYIHS-KFICHRDLKPQNLLIDPNTH-------------------TLKLCDFGSAKNLLAGQRSVSYICSRFYRA  238 (440)
T ss_pred             HHHHHHHHHH-CCEecCCcCHHHEEEcCCCC-------------------ceeeeccccchhccCCCCcccCCCCcCccC
Confidence            9999999999 99999999999999987652                   6999999999865432    1223345899


Q ss_pred             CCCCCCC-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh-----------------ccCCCC--------
Q 013230          355 PELFSGP-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL-----------------KKTFDR--------  408 (447)
Q Consensus       355 pelf~g~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~-----------------~~~~~~--------  408 (447)
                      ||++.+. .+....|||+ +|++.++++.|..||........+..++..                 ...++.        
T Consensus       239 PE~~~~~~~~~~~~DiwS-lGvil~elltG~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~  317 (440)
T PTZ00036        239 PELMLGATNYTTHIDLWS-LGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQLKEMNPNYADIKFPDVKPKDLKK  317 (440)
T ss_pred             HHHhcCCCCCCcHHHHHH-HHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhchhhhcccCCccCchhHHH
Confidence            9988764 4566779999 999999999999888654322222222100                 001111        


Q ss_pred             --CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          409 --SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       409 --~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                        +...++++++||++||++|     ||.|+|+||||+++..
T Consensus       318 ~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~hp~f~~~~~  359 (440)
T PTZ00036        318 VFPKGTPDDAINFISQFLKYEPLKRLNPIEALADPFFDDLRD  359 (440)
T ss_pred             HhccCCCHHHHHHHHHHCCCChhHCcCHHHHhCChhHHhhhc
Confidence              2246789999999999999     9999999999987643

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=2.5e-34  Score=287.47  Aligned_cols=240  Identities=19%  Similarity=0.190  Sum_probs=188.3

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+++++||+|+||.||+++.      +|+|++.....     ........+.+|+.++..++|        +|    |+
T Consensus         2 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~e~~~l~~~~~--------~~----i~   64 (332)
T cd05623           2 DFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEM-----LKRAETACFREERDVLVNGDN--------QW----IT   64 (332)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHH-----HHhhHHHHHHHHHHHHhhCCC--------CC----Ee
Confidence            569999999999999999973      89998864211     112223457788999988887        77    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      .+++++..                              ++.+|+||||+.+| +|.+++.     +++..++.++.||+.
T Consensus        65 ~~~~~~~~------------------------------~~~~~lv~ey~~~g-~L~~~l~~~~~~l~~~~~~~~~~qi~~  113 (332)
T cd05623          65 TLHYAFQD------------------------------ENNLYLVMDYYVGG-DLLTLLSKFEDRLPEDMARFYLAEMVI  113 (332)
T ss_pred             eEEEEEec------------------------------CCEEEEEEeccCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            99988532                              56799999999998 9998875     789999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------EEEEecCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------IFFLDLSQDP  355 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------~i~~~~~~~p  355 (447)
                      ||+|||+ .||+||||||+|||++.++                    .+||+|||+++.....+      ......|++|
T Consensus       114 al~~lH~-~~iiHrDlkp~Nili~~~~--------------------~~kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aP  172 (332)
T cd05623         114 AIDSVHQ-LHYVHRDIKPDNILMDMNG--------------------HIRLADFGSCLKLMEDGTVQSSVAVGTPDYISP  172 (332)
T ss_pred             HHHHHHH-CCeEecCCCHHHEEECCCC--------------------CEEEeecchheecccCCcceecccccCccccCH
Confidence            9999999 9999999999999999887                    79999999997643322      1223458899


Q ss_pred             CCCCC-----CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC---CccchHHHHHHHHHhcccc
Q 013230          356 ELFSG-----PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR---SSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       356 elf~g-----~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~---~~~~s~~l~dLl~~mL~~d  427 (447)
                      |++.+     .....+.|+|+ +|++.++++.|..|+...........+......++.   ...++++++|||++||..+
T Consensus       173 E~~~~~~~~~~~~~~~~DvwS-lGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~~li~~ll~~~  251 (332)
T cd05623         173 EILQAMEDGKGKYGPECDWWS-LGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPAQVTDVSEDAKDLIRRLICSR  251 (332)
T ss_pred             HHHhccccCCCCCCCcCCEEe-eHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCccccCCCccccCCHHHHHHHHHHccCh
Confidence            98853     23455669999 999999999999999766544444444432222222   2357999999999999765


Q ss_pred             -------CHHHHHcCCCCCCCC
Q 013230          428 -------SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 -------sa~elL~HPff~~~~  442 (447)
                             +++|+++||||+++.
T Consensus       252 ~~r~~r~~~~~~~~h~~f~~~~  273 (332)
T cd05623         252 EHRLGQNGIEDFKQHPFFTGID  273 (332)
T ss_pred             hhhcCCCCHHHHhCCCCcCCCC
Confidence                   799999999999764

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=8.6e-35  Score=291.79  Aligned_cols=237  Identities=23%  Similarity=0.244  Sum_probs=207.7

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|+.++++|+|+||.++++++      +|+|.|.....      .....+.+..|+.+++++.|        ||    ||
T Consensus         5 ~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~------t~~~r~~A~~E~~lis~~~h--------P~----iv   66 (426)
T KOG0589|consen    5 NYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKL------TEPERRSAIQEMDLLSKLLH--------PN----IV   66 (426)
T ss_pred             hhhhhhhcCccccchhhhhhhccCCceEEEEEEecccc------CchhhHHHHHHHHHHHhccC--------CC----ee
Confidence            459999999999999999983      99999987653      33334578999999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCc-eEEEEEEecCccchhhhhc------CCHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQ-RYIVFVLQHGGKDLESFVL------LNINEARSLLVQV  279 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qi  279 (447)
                      .+++.|+.                              +++ ++|||+||+|| +|.+.+.      |+++.+..++.|+
T Consensus        67 ~y~ds~~~------------------------------~~~~l~Ivm~Y~eGg-~l~~~i~~~k~~~f~E~~i~~~~~Q~  115 (426)
T KOG0589|consen   67 EYKDSFEE------------------------------DGQLLCIVMEYCEGG-DLAQLIKEQKGVLFPEERILKWFVQI  115 (426)
T ss_pred             eeccchhc------------------------------CCceEEEEEeecCCC-CHHHHHHHHhhccccHHHHHHHHHHH
Confidence            99999765                              455 99999999999 9999987      9999999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQD  354 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~  354 (447)
                      +.|+.|||+ .+|+|||||+.||++..++                    .|||+|||+|+.....-     ++..+.|+-
T Consensus       116 ~~av~ylH~-~~iLHRDlK~~Nifltk~~--------------------~VkLgDfGlaK~l~~~~~~a~tvvGTp~Ymc  174 (426)
T KOG0589|consen  116 LLAVNYLHE-NRVLHRDLKCANIFLTKDK--------------------KVKLGDFGLAKILNPEDSLASTVVGTPYYMC  174 (426)
T ss_pred             HHHHHHHHh-hhhhcccchhhhhhccccC--------------------ceeecchhhhhhcCCchhhhheecCCCcccC
Confidence            999999998 9999999999999999998                    68999999999987763     677788999


Q ss_pred             CCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CH
Q 013230          355 PELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SA  429 (447)
Q Consensus       355 pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa  429 (447)
                      ||++.+..+..+.|||+ +|++.+++..-..+|....+.....++.. ....|.+..++.+++.||+.||..+     +|
T Consensus       175 PEil~d~pYn~KSDiWs-LGC~~yEm~~lk~aF~a~~m~~Li~ki~~-~~~~Plp~~ys~el~~lv~~~l~~~P~~RPsa  252 (426)
T KOG0589|consen  175 PEILSDIPYNEKSDIWS-LGCCLYEMCTLKPAFKASNMSELILKINR-GLYSPLPSMYSSELRSLVKSMLRKNPEHRPSA  252 (426)
T ss_pred             HHHhCCCCCCccCcchh-hcchHHHHHhcccccCccchHHHHHHHhh-ccCCCCCccccHHHHHHHHHHhhcCCccCCCH
Confidence            99999999999999999 99999999988888876666666556553 3356778889999999999999999     99


Q ss_pred             HHHHcCCCCCCC
Q 013230          430 KEAIFDPFFSDL  441 (447)
Q Consensus       430 ~elL~HPff~~~  441 (447)
                      .++|.+|..+..
T Consensus       253 ~~LL~~P~l~~~  264 (426)
T KOG0589|consen  253 LELLRRPHLLRY  264 (426)
T ss_pred             HHHhhChhhhhH
Confidence            999999987643

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=5.8e-34  Score=283.85  Aligned_cols=239  Identities=17%  Similarity=0.171  Sum_probs=188.9

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+..+.||+|+||.||+|++      ||+|++.....     ......+....|+.++..+.|.       ++    |+
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~~~~~e~~~l~~~~~~-------~~----i~   64 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVV-----IQDDDVECTMVEKRVLALQDKP-------PF----LT   64 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHh-----hhhhHHHHHHHHHHHHHhccCC-------Cc----hh
Confidence            368889999999999999973      99999875421     1122335677899999888761       33    77


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      .+++++..                              .+.+|+||||+.|| +|.+++.    +++.+++.++.||+.|
T Consensus        65 ~~~~~~~~------------------------------~~~~~lv~Ey~~~g-~L~~~i~~~~~l~~~~~~~i~~qi~~a  113 (323)
T cd05615          65 QLHSCFQT------------------------------VDRLYFVMEYVNGG-DLMYHIQQVGKFKEPQAVFYAAEISVG  113 (323)
T ss_pred             heeeEEec------------------------------CCEEEEEEcCCCCC-cHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            88877532                              56799999999988 9988875    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----EEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----FFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i~~~~~~~pel  357 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+++.....+.     .....|++||.
T Consensus       114 l~~lH~-~~ivHrDikp~Nill~~~~--------------------~ikL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~  172 (323)
T cd05615         114 LFFLHR-RGIIYRDLKLDNVMLDSEG--------------------HIKIADFGMCKEHMVDGVTTRTFCGTPDYIAPEI  172 (323)
T ss_pred             HHHHHH-CCeeccCCCHHHeEECCCC--------------------CEEEeccccccccCCCCccccCccCCccccCHHH
Confidence            999999 9999999999999999987                    799999999986433221     12345899999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----------
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----------  427 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----------  427 (447)
                      +.+...+...|+|+ +|.+.+++++|..|+...........+..  .....+...+.++++|+++||..|          
T Consensus       173 ~~~~~~~~~~Diws-lGvil~elltG~~pf~~~~~~~~~~~i~~--~~~~~p~~~~~~~~~li~~~l~~~p~~R~~~~~~  249 (323)
T cd05615         173 IAYQPYGKSVDWWA-YGVLLYEMLAGQPPFDGEDEDELFQSIME--HNVSYPKSLSKEAVSICKGLMTKHPSKRLGCGPE  249 (323)
T ss_pred             HcCCCCCCccchhh-hHHHHHHHHhCCCCCCCCCHHHHHHHHHh--CCCCCCccCCHHHHHHHHHHcccCHhhCCCCCCC
Confidence            98877777789999 99999999999999876543333333332  223334568899999999999999          


Q ss_pred             CHHHHHcCCCCCCCC
Q 013230          428 SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 sa~elL~HPff~~~~  442 (447)
                      .++++++||||+.+.
T Consensus       250 ~~~~i~~h~~f~~~~  264 (323)
T cd05615         250 GERDIREHAFFRRID  264 (323)
T ss_pred             CHHHHhcCcccCCCC
Confidence            368999999999764

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=9.1e-34  Score=285.76  Aligned_cols=236  Identities=18%  Similarity=0.245  Sum_probs=186.0

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+.+++||+|+||.||+|++      ||+|++....       .......+.+|+.+++.++|        +|    |+
T Consensus        75 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------~~----iv  135 (353)
T PLN00034         75 ELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNH-------EDTVRRQICREIEILRDVNH--------PN----VV  135 (353)
T ss_pred             HHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCC-------cHHHHHHHHHHHHHHHhCCC--------CC----cc
Confidence            348889999999999999973      9999886431       22334678899999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhcCCHHHHHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVA  286 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~l~~~~~~~i~~Qil~gL~yl  286 (447)
                      ++++++..                              ++.+|+||||+.+| +|.......+..+..++.||+.||+||
T Consensus       136 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~i~~qi~~aL~~L  184 (353)
T PLN00034        136 KCHDMFDH------------------------------NGEIQVLLEFMDGG-SLEGTHIADEQFLADVARQILSGIAYL  184 (353)
T ss_pred             eeeeEecc------------------------------CCeEEEEEecCCCC-cccccccCCHHHHHHHHHHHHHHHHHH
Confidence            99998543                              56799999999988 888766678889999999999999999


Q ss_pred             HHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCCCCCC
Q 013230          287 EAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPELFSGP  361 (447)
Q Consensus       287 H~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pelf~g~  361 (447)
                      |+ +||+||||||+|||++.++                    .+||+|||+++.....     ..+....|++||.+...
T Consensus       185 H~-~~ivHrDlkp~NIll~~~~--------------------~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  243 (353)
T PLN00034        185 HR-RHIVHRDIKPSNLLINSAK--------------------NVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERINTD  243 (353)
T ss_pred             HH-CCEeecCCCHHHEEEcCCC--------------------CEEEcccccceecccccccccccccCccccCccccccc
Confidence            99 9999999999999999887                    7999999999875432     11233458899987432


Q ss_pred             -----CCCchHHHHHhhccCCcccccCCCCCChh---HHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C
Q 013230          362 -----KGDKQFDTYRKMKKVTEDQWEGSFPKTNV---LWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S  428 (447)
Q Consensus       362 -----~~~~~~di~s~lg~~~~~~~~~~~p~~~~---~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s  428 (447)
                           ....+.|||+ +|++.++++.|..||...   .|......+.. ......+...+.++++||.+||..|     |
T Consensus       244 ~~~~~~~~~~~Dvws-lGvil~el~~g~~pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~li~~~l~~~P~~Rpt  321 (353)
T PLN00034        244 LNHGAYDGYAGDIWS-LGVSILEFYLGRFPFGVGRQGDWASLMCAICM-SQPPEAPATASREFRHFISCCLQREPAKRWS  321 (353)
T ss_pred             cccCcCCCcchhHHH-HHHHHHHHHhCCCCCCCCCCccHHHHHHHHhc-cCCCCCCCccCHHHHHHHHHHccCChhhCcC
Confidence                 2223569999 999999999999988532   23333222221 2222334567899999999999999     9


Q ss_pred             HHHHHcCCCCCCC
Q 013230          429 AKEAIFDPFFSDL  441 (447)
Q Consensus       429 a~elL~HPff~~~  441 (447)
                      +.|+|+||||.+-
T Consensus       322 ~~ell~hp~~~~~  334 (353)
T PLN00034        322 AMQLLQHPFILRA  334 (353)
T ss_pred             HHHHhcCcccccC
Confidence            9999999999875

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=1.6e-33  Score=275.14  Aligned_cols=242  Identities=19%  Similarity=0.273  Sum_probs=184.2

Q ss_pred             CCcceEEeccccceEEEEece-------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccce
Q 013230          133 DPENIVKVGEGTFGEAFLAGN-------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~-------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~i  205 (447)
                      .|++++.||+|+||.||+|++       +|+|++.....      .........+|+.+++.+..+.|     ||    |
T Consensus         2 ~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~------~~~~~~~~~~e~~~l~~l~~~~h-----pn----i   66 (290)
T cd07862           2 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTG------EEGMPLSTIREVAVLRHLETFEH-----PN----V   66 (290)
T ss_pred             CcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccC------CCCchHHHHHHHHHHHhhcccCC-----CC----c
Confidence            459999999999999999963       89998875432      12233456789999888865434     66    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQV  279 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qi  279 (447)
                      +++++++....                         ......+++||||+. | +|.+++.      +++..++.++.||
T Consensus        67 v~~~~~~~~~~-------------------------~~~~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~~~~~~~i~~qi  119 (290)
T cd07862          67 VRLFDVCTVSR-------------------------TDRETKLTLVFEHVD-Q-DLTTYLDKVPEPGVPTETIKDMMFQL  119 (290)
T ss_pred             ceEEEEEeccc-------------------------CCCCCcEEEEEccCC-C-CHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            99999864311                         112456999999997 5 7887764      7899999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDP  355 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~p  355 (447)
                      +.||+|||+ .||+||||||+|||++.++                    .+||+|||+|+.....    .......|++|
T Consensus       120 ~~aL~~lH~-~~iiH~dlkp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aP  178 (290)
T cd07862         120 LRGLDFLHS-HRVVHRDLKPQNILVTSSG--------------------QIKLADFGLARIYSFQMALTSVVVTLWYRAP  178 (290)
T ss_pred             HHHHHHHHH-CCeeeCCCCHHHEEEcCCC--------------------CEEEccccceEeccCCcccccccccccccCh
Confidence            999999999 9999999999999999887                    7999999999875433    22334558999


Q ss_pred             CCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc-----cCCC--------------------CCc
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK-----KTFD--------------------RSS  410 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~-----~~~~--------------------~~~  410 (447)
                      |.+.+.....+.|+|+ +|++.++++.+..|+........+..++...     ..++                    ...
T Consensus       179 E~~~~~~~~~~~Diws-lG~il~el~~g~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (290)
T cd07862         179 EVLLQSSYATPVDLWS-VGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVT  257 (290)
T ss_pred             HHHhCCCCCCccchHH-HHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhchhhhcccchhccCCCCCCHHHHcc
Confidence            9998777777789999 9999999999988886543322222221100     0000                    012


Q ss_pred             cchHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          411 KDERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       411 ~~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                      ..+..+++|+.+||++|     |+.|+|+||||
T Consensus       258 ~~~~~~~~li~~~l~~~P~~R~s~~~~l~hp~f  290 (290)
T cd07862         258 DIDELGKDLLLKCLTFNPAKRISAYSALSHPYF  290 (290)
T ss_pred             CCCHHHHHHHHHHhccCchhcCCHHHHhcCCCC
Confidence            46788999999999999     99999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-34  Score=285.47  Aligned_cols=237  Identities=20%  Similarity=0.220  Sum_probs=202.9

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |.+.+.||+|.|++|.+|++      ||||+|.+.+.      ..-...++..|++.|+.++|        ||    ||+
T Consensus        20 YDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKl------D~~st~hlfqEVRCMKLVQH--------pN----iVR   81 (864)
T KOG4717|consen   20 YDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKL------DTLSTGHLFQEVRCMKLVQH--------PN----IVR   81 (864)
T ss_pred             ehhhhhhcCCceehhhhhhhhcccceeEEEEeccccc------chhhhhHHHHHHHHHHHhcC--------cC----eee
Confidence            48889999999999999984      99999986543      33344678999999999999        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +|++                              +.++..+|+|+|+-++| ||++||-     +.++.++.|+.||+.|
T Consensus        82 LYEV------------------------------iDTQTKlyLiLELGD~G-Dl~DyImKHe~Gl~E~La~kYF~QI~~A  130 (864)
T KOG4717|consen   82 LYEV------------------------------IDTQTKLYLILELGDGG-DLFDYIMKHEEGLNEDLAKKYFAQIVHA  130 (864)
T ss_pred             eeeh------------------------------hcccceEEEEEEecCCc-hHHHHHHhhhccccHHHHHHHHHHHHHH
Confidence            9998                              45577899999999999 9999986     9999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE----EEEecCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI----FFLDLSQDPELF  358 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~----i~~~~~~~pelf  358 (447)
                      +.|||. ..||||||||||+.+...-.                   .|||+|||++-.+.++.-    ...-.|.+||+.
T Consensus       131 I~YCHq-LHVVHRDLKPENVVFFEKlG-------------------lVKLTDFGFSNkf~PG~kL~TsCGSLAYSAPEIL  190 (864)
T KOG4717|consen  131 ISYCHQ-LHVVHRDLKPENVVFFEKLG-------------------LVKLTDFGFSNKFQPGKKLTTSCGSLAYSAPEIL  190 (864)
T ss_pred             HHHHhh-hhhhcccCCcceeEEeeecC-------------------ceEeeeccccccCCCcchhhcccchhhccCchhh
Confidence            999999 99999999999998877652                   799999999977665421    122347999999


Q ss_pred             CCCCCCchH-HHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHH
Q 013230          359 SGPKGDKQF-DTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEA  432 (447)
Q Consensus       359 ~g~~~~~~~-di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~el  432 (447)
                      .|..++... |||+ +|++++...-|..||....-.+.+..++  ...+..|..+|.+++|||..||+.|     |.+++
T Consensus       191 LGDsYDAPAVDiWS-LGVILyMLVCGq~PFqeANDSETLTmIm--DCKYtvPshvS~eCrdLI~sMLvRdPkkRAslEeI  267 (864)
T KOG4717|consen  191 LGDSYDAPAVDIWS-LGVILYMLVCGQPPFQEANDSETLTMIM--DCKYTVPSHVSKECRDLIQSMLVRDPKKRASLEEI  267 (864)
T ss_pred             hcCccCCcchhhhH-HHHHHHHHHhCCCccccccchhhhhhhh--cccccCchhhhHHHHHHHHHHHhcCchhhccHHHH
Confidence            998888766 9999 9999999999999998776666666665  5566677889999999999999999     99999


Q ss_pred             HcCCCCCCCC
Q 013230          433 IFDPFFSDLI  442 (447)
Q Consensus       433 L~HPff~~~~  442 (447)
                      ..|+|++...
T Consensus       268 ~s~~Wlq~~D  277 (864)
T KOG4717|consen  268 VSTSWLQAGD  277 (864)
T ss_pred             hccccccCCC
Confidence            9999999763

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=5.3e-34  Score=283.63  Aligned_cols=232  Identities=17%  Similarity=0.152  Sum_probs=184.6

Q ss_pred             EEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCcccceeeeee
Q 013230          138 VKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      +.||+|+||.||+|++      ||+|++.....     ...........|+.++..+ +|        ||    |+++++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~e~~il~~~~~h--------p~----i~~~~~   63 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVI-----LQDDDVDCTMTEKRILALAAKH--------PF----LTALHC   63 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHh-----hhhhHHHHHHHHHHHHHhccCC--------CC----ccceee
Confidence            3699999999999973      89999875321     1222335567888888876 44        66    999999


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHH
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVA  286 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~yl  286 (447)
                      ++..                              ++.+|+||||+.+| +|..++.    +++..++.++.||+.||+||
T Consensus        64 ~~~~------------------------------~~~~~lv~E~~~~~-~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~L  112 (321)
T cd05591          64 CFQT------------------------------KDRLFFVMEYVNGG-DLMFQIQRSRKFDEPRSRFYAAEVTLALMFL  112 (321)
T ss_pred             EEEc------------------------------CCeEEEEEeCCCCC-cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            8643                              56699999999988 9987775    89999999999999999999


Q ss_pred             HHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCCCCCC
Q 013230          287 EAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPELFSGP  361 (447)
Q Consensus       287 H~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pelf~g~  361 (447)
                      |+ +||+||||||+|||++.++                    .+||+|||+|+.....+     ......|++||.+.+.
T Consensus       113 H~-~~ivHrDikp~Nill~~~~--------------------~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  171 (321)
T cd05591         113 HR-HGVIYRDLKLDNILLDAEG--------------------HCKLADFGMCKEGILNGVTTTTFCGTPDYIAPEILQEL  171 (321)
T ss_pred             HH-CCeeccCCCHHHeEECCCC--------------------CEEEeecccceecccCCccccccccCccccCHHHHcCC
Confidence            99 9999999999999999987                    79999999998643221     1223458999999887


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc------------CH
Q 013230          362 KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN------------SA  429 (447)
Q Consensus       362 ~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d------------sa  429 (447)
                      ..+.+.|+|+ +|++.+++++|..|+...........+...  ....+...+.++++||++||..|            ++
T Consensus       172 ~~~~~~Dvws-lG~il~el~tg~~Pf~~~~~~~~~~~i~~~--~~~~p~~~~~~~~~ll~~~L~~dp~~R~~~~~~~~~~  248 (321)
T cd05591         172 EYGPSVDWWA-LGVLMYEMMAGQPPFEADNEDDLFESILHD--DVLYPVWLSKEAVSILKAFMTKNPNKRLGCVASQGGE  248 (321)
T ss_pred             CCCCccceec-hhHHHHHHhcCCCCCCCCCHHHHHHHHHcC--CCCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCCH
Confidence            7777889999 999999999999998765444444444422  23334557899999999999998            57


Q ss_pred             HHHHcCCCCCCC
Q 013230          430 KEAIFDPFFSDL  441 (447)
Q Consensus       430 ~elL~HPff~~~  441 (447)
                      +++++||||...
T Consensus       249 ~~~~~hp~~~~~  260 (321)
T cd05591         249 DAIKQHPFFKEI  260 (321)
T ss_pred             HHHhcCCccCCC
Confidence            999999999875

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.5e-36  Score=293.22  Aligned_cols=233  Identities=20%  Similarity=0.270  Sum_probs=199.3

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |..++.||+|+||.||+|.+      ||+|++..+.       .....+.+.+|+.++..+++        +|    |.+
T Consensus        15 ~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~-------~~deIediqqei~~Ls~~~~--------~~----it~   75 (467)
T KOG0201|consen   15 YTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEE-------AEDEIEDIQQEISVLSQCDS--------PN----ITE   75 (467)
T ss_pred             cccchhccccccceeeeeeeccccceEEEEEechhh-------cchhhHHHHHHHHHHHhcCc--------ch----HHh
Confidence            47779999999999999984      9999998763       23345788999999999998        78    899


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +|+.|++                              ...++|+||||.|| ++.++++    +.+.++..++++++.||
T Consensus        76 yygsyl~------------------------------g~~LwiiMey~~gG-sv~~lL~~~~~~~E~~i~~ilre~l~~l  124 (467)
T KOG0201|consen   76 YYGSYLK------------------------------GTKLWIIMEYCGGG-SVLDLLKSGNILDEFEIAVILREVLKGL  124 (467)
T ss_pred             hhhheee------------------------------cccHHHHHHHhcCc-chhhhhccCCCCccceeeeehHHHHHHh
Confidence            9999876                              67799999999999 8888887    58999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPELF  358 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pelf  358 (447)
                      .|||. .+.+|||||+.|||+..++                    .|||+|||+|...+..     ..+...++||||+.
T Consensus       125 ~ylH~-~~kiHrDIKaanil~s~~g--------------------~vkl~DfgVa~ql~~~~~rr~tfvGTPfwMAPEVI  183 (467)
T KOG0201|consen  125 DYLHS-EKKIHRDIKAANILLSESG--------------------DVKLADFGVAGQLTNTVKRRKTFVGTPFWMAPEVI  183 (467)
T ss_pred             hhhhh-cceecccccccceeEeccC--------------------cEEEEecceeeeeechhhccccccccccccchhhh
Confidence            99999 9999999999999999997                    7999999999876543     45677889999999


Q ss_pred             CCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC-CccchHHHHHHHHHhcccc-----CHHHH
Q 013230          359 SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR-SSKDERDLRSLKKRLDKYN-----SAKEA  432 (447)
Q Consensus       359 ~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~-~~~~s~~l~dLl~~mL~~d-----sa~el  432 (447)
                      .+..++.+.|||+ +|+...++..|..|+....-++++.-+-  +...|. ...+|+.+++|+..||.+|     ||.++
T Consensus       184 ~~~~Y~~KADIWS-LGITaiEla~GePP~s~~hPmrvlflIp--k~~PP~L~~~~S~~~kEFV~~CL~k~P~~RpsA~~L  260 (467)
T KOG0201|consen  184 KQSGYDTKADIWS-LGITAIELAKGEPPHSKLHPMRVLFLIP--KSAPPRLDGDFSPPFKEFVEACLDKNPEFRPSAKEL  260 (467)
T ss_pred             ccccccchhhhhh-hhHHHHHHhcCCCCCcccCcceEEEecc--CCCCCccccccCHHHHHHHHHHhhcCcccCcCHHHH
Confidence            9988999999999 9999999999999987765444433322  323332 3468999999999999999     99999


Q ss_pred             HcCCCCCC
Q 013230          433 IFDPFFSD  440 (447)
Q Consensus       433 L~HPff~~  440 (447)
                      |+|+|++.
T Consensus       261 LKh~FIk~  268 (467)
T KOG0201|consen  261 LKHKFIKR  268 (467)
T ss_pred             hhhHHHHh
Confidence            99999986

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=6.7e-34  Score=284.09  Aligned_cols=233  Identities=19%  Similarity=0.217  Sum_probs=183.7

Q ss_pred             EEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCcccceeeeee
Q 013230          138 VKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      +.||+|+||.||+|++      ||+|+++....     ........+.+|+.+++.+ +|        ||    |+++++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~-----~~~~~~~~~~~e~~il~~~~~h--------p~----Iv~~~~   63 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELV-----NDDEDIDWVQTEKHVFETASNH--------PF----LVGLHS   63 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHh-----hhhhHHHHHHHHHHHHHhccCC--------CC----CCceEE
Confidence            4699999999999973      99999875421     1222345678899999988 45        66    999999


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHH
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVA  286 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~yl  286 (447)
                      ++..                              ++.+|+||||+.|| +|..++.    +++..++.++.||+.||+||
T Consensus        64 ~~~~------------------------------~~~~~lv~e~~~~g-~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~l  112 (329)
T cd05588          64 CFQT------------------------------ESRLFFVIEFVSGG-DLMFHMQRQRKLPEEHARFYSAEISLALNFL  112 (329)
T ss_pred             EEEc------------------------------CCEEEEEEeCCCCC-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            8543                              56799999999988 9988764    89999999999999999999


Q ss_pred             HHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCCCCCC
Q 013230          287 EAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPELFSGP  361 (447)
Q Consensus       287 H~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pelf~g~  361 (447)
                      |+ +||+||||||+|||++.++                    .+||+|||+++.....+     ......|++||++.+.
T Consensus       113 H~-~~ivH~dlkp~Nili~~~~--------------------~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  171 (329)
T cd05588         113 HE-RGIIYRDLKLDNVLLDAEG--------------------HIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILRGE  171 (329)
T ss_pred             HH-CCeEecCCCHHHeEECCCC--------------------CEEECcCccccccccCCCccccccCCccccCHHHHcCC
Confidence            99 9999999999999999887                    79999999997532211     1223348999999987


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCChh--------HHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C
Q 013230          362 KGDKQFDTYRKMKKVTEDQWEGSFPKTNV--------LWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S  428 (447)
Q Consensus       362 ~~~~~~di~s~lg~~~~~~~~~~~p~~~~--------~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s  428 (447)
                      ..+.+.|+|+ +|++.+++++|..|+...        .....+.+.+. ......+..++.++.+||++||+.|     |
T Consensus       172 ~~~~~~Diws-lG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~  249 (329)
T cd05588         172 DYGFSVDWWA-LGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVIL-EKQIRIPRSLSVKASSVLKGFLNKDPKERLG  249 (329)
T ss_pred             CCCCccceec-hHHHHHHHHHCCCCcccccccccccccchHHHHHHHH-cCCCCCCCCCCHHHHHHHHHHhccCHHHcCC
Confidence            7777889999 999999999999888421        11122223222 2334445678999999999999999     4


Q ss_pred             ------HHHHHcCCCCCCC
Q 013230          429 ------AKEAIFDPFFSDL  441 (447)
Q Consensus       429 ------a~elL~HPff~~~  441 (447)
                            ++++++||||..+
T Consensus       250 ~~~~~~~~~i~~hp~~~~~  268 (329)
T cd05588         250 CHPQTGFRDIKSHPFFRNI  268 (329)
T ss_pred             CCCCCCHHHHhcCCCCCCC
Confidence                  7899999999865

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=1.1e-33  Score=280.77  Aligned_cols=232  Identities=21%  Similarity=0.234  Sum_probs=187.1

Q ss_pred             eEEeccccceEEEEec---------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          137 IVKVGEGTFGEAFLAG---------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       137 ~~~LG~G~fG~V~~a~---------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      ++.||+|+||.||+++         .+|+|++.....      .........+|+.++++++|        ||    |++
T Consensus         1 l~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~------~~~~~~~~~~E~~~l~~l~h--------~n----iv~   62 (318)
T cd05582           1 LKVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATL------KVRDRVRTKMERDILAEVNH--------PF----IVK   62 (318)
T ss_pred             CceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHh------hhhhHHHHHHHHHHHHhCCC--------CC----ccc
Confidence            3679999999999875         389998875321      11223456789999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++..                              ++.+|+||||+.+| +|.+++.    +++..++.++.||+.||
T Consensus        63 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~l~~~~~~~~~~qi~~~l  111 (318)
T cd05582          63 LHYAFQT------------------------------EGKLYLILDFLRGG-DLFTRLSKEVMFTEEDVKFYLAELALAL  111 (318)
T ss_pred             EEEEEEc------------------------------CCEEEEEEcCCCCC-cHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            9988543                              56799999999988 9988875    89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-E----EEEecCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-I----FFLDLSQDPELF  358 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-~----i~~~~~~~pelf  358 (447)
                      +|||+ +||+||||||+|||++.++                    .+||+|||+++...... .    .....|++||.+
T Consensus       112 ~~lH~-~~i~H~dlkp~Nil~~~~~--------------------~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~  170 (318)
T cd05582         112 DHLHS-LGIIYRDLKPENILLDEEG--------------------HIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVV  170 (318)
T ss_pred             HHHHH-CCEecCCCCHHHeEECCCC--------------------cEEEeeccCCcccCCCCCceecccCChhhcCHHHH
Confidence            99999 9999999999999999887                    79999999998654431 1    122348899999


Q ss_pred             CCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C-----
Q 013230          359 SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S-----  428 (447)
Q Consensus       359 ~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s-----  428 (447)
                      .+.....+.|+|+ +|++.+++++|..|+...........+.  ...+..+...++++++||++||+.|     |     
T Consensus       171 ~~~~~~~~~Diws-lG~il~el~tg~~p~~~~~~~~~~~~i~--~~~~~~p~~~~~~~~~li~~~l~~~P~~R~~a~~~~  247 (318)
T cd05582         171 NRRGHTQSADWWS-FGVLMFEMLTGSLPFQGKDRKETMTMIL--KAKLGMPQFLSPEAQSLLRALFKRNPANRLGAGPDG  247 (318)
T ss_pred             cCCCCCCccceec-cceEeeeeccCCCCCCCCCHHHHHHHHH--cCCCCCCCCCCHHHHHHHHHHhhcCHhHcCCCCCCC
Confidence            8877777779999 9999999999999987654444444443  2234445668999999999999999     5     


Q ss_pred             HHHHHcCCCCCCC
Q 013230          429 AKEAIFDPFFSDL  441 (447)
Q Consensus       429 a~elL~HPff~~~  441 (447)
                      +.++++||||+..
T Consensus       248 ~~~~~~~~~~~~~  260 (318)
T cd05582         248 VEEIKRHPFFSTI  260 (318)
T ss_pred             HHHHhCCCCcCCC
Confidence            7889999999875

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.1e-35  Score=277.31  Aligned_cols=241  Identities=19%  Similarity=0.193  Sum_probs=200.8

Q ss_pred             CCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccce
Q 013230          132 SDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~i  205 (447)
                      .+|+.++.||+|+||+|.+|+.      +|+|++++.-.     .......+.+.|-++|+..+|        |.    +
T Consensus       168 ~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKevi-----iakdEVAHTlTE~RVL~~~~H--------PF----L  230 (516)
T KOG0690|consen  168 EDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVI-----IAKDEVAHTLTENRVLQNCRH--------PF----L  230 (516)
T ss_pred             chhhHHHHhcCCccceEEEEeecccCceeehhhhhhhhe-----eehHHhhhhhhHHHHHHhccC--------cH----H
Confidence            3568999999999999999983      99998876543     222234567889999999988        76    6


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTA  281 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~  281 (447)
                      ..+.-.                              +.+.+.+|+||||+.|| .|.-.+.    |+++.++++...|+.
T Consensus       231 t~LKYs------------------------------FQt~drlCFVMeyanGG-eLf~HLsrer~FsE~RtRFYGaEIvs  279 (516)
T KOG0690|consen  231 TSLKYS------------------------------FQTQDRLCFVMEYANGG-ELFFHLSRERVFSEDRTRFYGAEIVS  279 (516)
T ss_pred             HHhhhh------------------------------hccCceEEEEEEEccCc-eEeeehhhhhcccchhhhhhhHHHHH
Confidence            666544                              45578899999999999 6665554    999999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE-----EEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF-----FLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i-----~~~~~~~pe  356 (447)
                      ||.|||+ .+||.||||.||+|++.++                    ++||+|||+++.....|..     ...-|.+||
T Consensus       280 AL~YLHs-~~ivYRDlKLENLlLDkDG--------------------HIKitDFGLCKE~I~~g~t~kTFCGTPEYLAPE  338 (516)
T KOG0690|consen  280 ALGYLHS-RNIVYRDLKLENLLLDKDG--------------------HIKITDFGLCKEEIKYGDTTKTFCGTPEYLAPE  338 (516)
T ss_pred             Hhhhhhh-CCeeeeechhhhheeccCC--------------------ceEeeecccchhcccccceeccccCChhhcCch
Confidence            9999999 9999999999999999999                    8999999999876554432     223378999


Q ss_pred             CCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc---------
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN---------  427 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d---------  427 (447)
                      +.....+...+|.|. +|++.++|.-|.+||++........-++...-.||  ..++++++.||.++|.+|         
T Consensus       339 VleDnDYgraVDWWG-~GVVMYEMmCGRLPFyn~dh~kLFeLIl~ed~kFP--r~ls~eAktLLsGLL~kdP~kRLGgGp  415 (516)
T KOG0690|consen  339 VLEDNDYGRAVDWWG-VGVVMYEMMCGRLPFYNKDHEKLFELILMEDLKFP--RTLSPEAKTLLSGLLKKDPKKRLGGGP  415 (516)
T ss_pred             hhccccccceeehhh-hhHHHHHHHhccCcccccchhHHHHHHHhhhccCC--ccCCHHHHHHHHHHhhcChHhhcCCCc
Confidence            999888888889998 99999999999999999876666666665555666  569999999999999999         


Q ss_pred             -CHHHHHcCCCCCCCCCC
Q 013230          428 -SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       428 -sa~elL~HPff~~~~~~  444 (447)
                       .|.|+.+|+||.++.+.
T Consensus       416 dDakEi~~h~FF~~v~W~  433 (516)
T KOG0690|consen  416 DDAKEIMRHRFFASVDWE  433 (516)
T ss_pred             hhHHHHHhhhhhccCCHH
Confidence             89999999999988653

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=1.3e-33  Score=281.74  Aligned_cols=243  Identities=23%  Similarity=0.264  Sum_probs=183.0

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.++||+|+||.||+|++      ||+|++....      ........+.+|+.+++.++|        ||    |++
T Consensus         2 y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------pn----iv~   63 (338)
T cd07859           2 YKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVF------EHVSDATRILREIKLLRLLRH--------PD----IVE   63 (338)
T ss_pred             eEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhh------ccchhHHHHHHHHHHHHhCCC--------CC----Eee
Confidence            58999999999999999973      9999886431      112223567899999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++.....                         .....+|+|||||. | +|.+++.    +++..++.++.||+.||
T Consensus        64 ~~~~~~~~~~-------------------------~~~~~~~lv~e~~~-~-~L~~~l~~~~~~~~~~~~~i~~qi~~aL  116 (338)
T cd07859          64 IKHIMLPPSR-------------------------REFKDIYVVFELME-S-DLHQVIKANDDLTPEHHQFFLYQLLRAL  116 (338)
T ss_pred             ecceEeccCC-------------------------CCCceEEEEEecCC-C-CHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence            9998653211                         11245899999995 5 8888875    89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--------CEEEEecCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--------DIFFLDLSQDP  355 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--------g~i~~~~~~~p  355 (447)
                      +|||+ +||+||||||+|||++.++                    .+||+|||+++.....        ..+....|++|
T Consensus       117 ~~LH~-~~ivH~dlkp~NIll~~~~--------------------~~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~aP  175 (338)
T cd07859         117 KYIHT-ANVFHRDLKPKNILANADC--------------------KLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAP  175 (338)
T ss_pred             HHHHH-CCeecCCCCHHHeEECCCC--------------------cEEEccCccccccccccCccccccCCCCCCCcCCH
Confidence            99999 9999999999999999987                    7999999999864321        11233458899


Q ss_pred             CCCCC--CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHH---HH-----------------------HHhhccCCC
Q 013230          356 ELFSG--PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYL---VD-----------------------MLLLKKTFD  407 (447)
Q Consensus       356 elf~g--~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~---~~-----------------------~l~~~~~~~  407 (447)
                      |++.+  ...+.+.|+|+ +|++.+++++|..|+........+   .+                       .+......+
T Consensus       176 E~~~~~~~~~~~~~DvwS-lGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  254 (338)
T cd07859         176 ELCGSFFSKYTPAIDIWS-IGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPETISRVRNEKARRYLSSMRKKQPVP  254 (338)
T ss_pred             HHHhccccccCchhHHHH-HHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhhcccCCCc
Confidence            98865  45566779999 999999999998887532111100   00                       000000000


Q ss_pred             ---CCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          408 ---RSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       408 ---~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                         .....++++.+||.+||..|     |++|+|+||||+++..
T Consensus       255 ~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~hp~f~~~~~  298 (338)
T cd07859         255 FSQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAK  298 (338)
T ss_pred             hHHhcCCCChHHHHHHHHHcCcCcccCCCHHHHhcCchhhhcCc
Confidence               01235788999999999999     9999999999987654

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=1.3e-33  Score=281.16  Aligned_cols=233  Identities=21%  Similarity=0.211  Sum_probs=182.3

Q ss_pred             EEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHH-HHHhccccccCCCCCCCcccceeeeee
Q 013230          138 VKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVV-LSWTLNHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~-il~~L~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      +.||+|+||+||+|++      ||+|++.....     ........+..|.. +++.++|        ||    |+++++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~~~~~e~~~~~~~l~h--------p~----iv~~~~   63 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAI-----LKKKEQKHIMAERNVLLKNVKH--------PF----LVGLHY   63 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHH-----hhhhHHHHHHHHHHHHHhhCCC--------CC----CCCeeE
Confidence            4699999999999974      99999875421     11122234555555 4567777        77    999998


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHH
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVA  286 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~yl  286 (447)
                      .+..                              .+.+|+||||+.+| +|..++.    +++..++.++.||+.||+||
T Consensus        64 ~~~~------------------------------~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~l  112 (323)
T cd05575          64 SFQT------------------------------ADKLYFVLDYVNGG-ELFFHLQRERSFPEPRARFYAAEIASALGYL  112 (323)
T ss_pred             EEEe------------------------------CCEEEEEEcCCCCC-CHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            8543                              56799999999988 8988775    89999999999999999999


Q ss_pred             HHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCCCCCC
Q 013230          287 EAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPELFSGP  361 (447)
Q Consensus       287 H~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pelf~g~  361 (447)
                      |+ +||+||||||+|||++.++                    .+||+|||+++.....     .......|++||.+.+.
T Consensus       113 H~-~givH~dikp~NIll~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  171 (323)
T cd05575         113 HS-LNIIYRDLKPENILLDSQG--------------------HVVLTDFGLCKEGIEHSKTTSTFCGTPEYLAPEVLRKQ  171 (323)
T ss_pred             HH-CCeEeCCCCHHHeEECCCC--------------------cEEEeccCCCcccccCCCccccccCChhhcChhhhcCC
Confidence            99 9999999999999999987                    7999999998753221     11223458999999887


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CH----HHH
Q 013230          362 KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SA----KEA  432 (447)
Q Consensus       362 ~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa----~el  432 (447)
                      ..+.+.|+|+ +|++.++++.|..|+...........++.  .....+...++++.+||++||+.|     ++    .++
T Consensus       172 ~~~~~~Dvws-lG~il~ell~g~~pf~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~i  248 (323)
T cd05575         172 PYDRTVDWWC-LGAVLYEMLYGLPPFYSRDTAEMYDNILN--KPLRLKPNISVSARHLLEGLLQKDRTKRLGAKDDFLEI  248 (323)
T ss_pred             CCCccccccc-cchhhhhhhcCCCCCCCCCHHHHHHHHHc--CCCCCCCCCCHHHHHHHHHHhhcCHHhCCCCCCCHHHH
Confidence            7777789999 99999999999999876544444344432  223334567999999999999999     44    799


Q ss_pred             HcCCCCCCCC
Q 013230          433 IFDPFFSDLI  442 (447)
Q Consensus       433 L~HPff~~~~  442 (447)
                      ++||||....
T Consensus       249 l~~~~~~~~~  258 (323)
T cd05575         249 KNHVFFSSIN  258 (323)
T ss_pred             HcCCCcCCCC
Confidence            9999998653

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=2.6e-33  Score=286.65  Aligned_cols=232  Identities=15%  Similarity=0.095  Sum_probs=179.2

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|+++++||+|+||.||+|++      ||+|....              ..+.+|+.+++.|+|        ||    ||
T Consensus        93 ~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~--------------~~~~~E~~il~~l~H--------pn----Iv  146 (391)
T PHA03212         93 GFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQR--------------GGTATEAHILRAINH--------PS----II  146 (391)
T ss_pred             CcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhh--------------hhhHHHHHHHHhCCC--------CC----CC
Confidence            469999999999999999974      88885431              235789999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      +++++|..                              +...|+|||++. | +|..++.    +++..++.++.||+.|
T Consensus       147 ~~~~~~~~------------------------------~~~~~lv~e~~~-~-~L~~~l~~~~~l~~~~~~~i~~qi~~a  194 (391)
T PHA03212        147 QLKGTFTY------------------------------NKFTCLILPRYK-T-DLYCYLAAKRNIAICDILAIERSVLRA  194 (391)
T ss_pred             CEeEEEEE------------------------------CCeeEEEEecCC-C-CHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            99998654                              456899999986 5 7887765    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------CEEEEecCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------DIFFLDLSQDPE  356 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g~i~~~~~~~pe  356 (447)
                      |+|||+ +||+||||||+|||++.++                    .+||+|||+|+.....      +......|++||
T Consensus       195 L~ylH~-~~IvHrDiKP~NIll~~~~--------------------~vkL~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE  253 (391)
T PHA03212        195 IQYLHE-NRIIHRDIKAENIFINHPG--------------------DVCLGDFGAACFPVDINANKYYGWAGTIATNAPE  253 (391)
T ss_pred             HHHHHh-CCcccCCCChHhEEEcCCC--------------------CEEEEeCCcccccccccccccccccCccCCCChh
Confidence            999999 9999999999999999887                    7999999999753221      223345588999


Q ss_pred             CCCCCCCCchHHHHHhhccCCcccccCCCCCChhH----------HHHHH-------------------HHH---Hhhc-
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVL----------WLVYL-------------------VDM---LLLK-  403 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~----------~~~~~-------------------~~~---l~~~-  403 (447)
                      ++.+.....+.|||+ +|++.+++++|..|+....          ....+                   ...   +... 
T Consensus       254 ~~~~~~~~~~~DiwS-lGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  332 (391)
T PHA03212        254 LLARDPYGPAVDIWS-AGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEIYIGLAKKS  332 (391)
T ss_pred             hhcCCCCCcHHHHHH-HHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHHHHHHHHhcc
Confidence            998877778889999 8999999998876553210          00000                   000   0000 


Q ss_pred             cCCC--C-----CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          404 KTFD--R-----SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       404 ~~~~--~-----~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                      ...+  .     ....+.++++||.+||.+|     ||+|+|+||||+++..+
T Consensus       333 ~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~hp~f~~~~~~  385 (391)
T PHA03212        333 SRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLDFAAFQDIPDP  385 (391)
T ss_pred             CCCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhcChhhccCCCC
Confidence            0000  0     0134678999999999999     99999999999987654

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=2.9e-33  Score=282.60  Aligned_cols=247  Identities=19%  Similarity=0.259  Sum_probs=186.6

Q ss_pred             hhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCC
Q 013230          127 LFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLN  200 (447)
Q Consensus       127 ~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n  200 (447)
                      ..++|   ++++.||+|+||.||+|++      +|+|++....      ........+.+|+.+++.++|        ||
T Consensus        19 ~~~~y---~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------~n   81 (359)
T cd07876          19 VLKRY---QQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPF------QNQTHAKRAYRELVLLKCVNH--------KN   81 (359)
T ss_pred             hhhce---EEEEEeecCCCEEEEEEEEcCCCceeEEEEecccc------cchhHHHHHHHHHHHHHhCCC--------CC
Confidence            34555   9999999999999999973      9999886432      122334677899999999998        88


Q ss_pred             cccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--CCHHHHHHHHHH
Q 013230          201 ACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--LNINEARSLLVQ  278 (447)
Q Consensus       201 ~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--l~~~~~~~i~~Q  278 (447)
                          |+++++++...+.                        ......+|+||||+.+  +|.+.+.  +++..++.++.|
T Consensus        82 ----iv~~~~~~~~~~~------------------------~~~~~~~~lv~e~~~~--~l~~~~~~~~~~~~~~~~~~q  131 (359)
T cd07876          82 ----IISLLNVFTPQKS------------------------LEEFQDVYLVMELMDA--NLCQVIHMELDHERMSYLLYQ  131 (359)
T ss_pred             ----EeeeeeeeccCCC------------------------ccccceeEEEEeCCCc--CHHHHHhccCCHHHHHHHHHH
Confidence                9999998643221                        1112458999999974  5666554  889999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCC
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQD  354 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~  354 (447)
                      |+.||+|||+ +||+||||||+|||++.++                    .+||+|||+|+.....    .......|++
T Consensus       132 i~~~L~~LH~-~~ivHrDlkp~NIl~~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~a  190 (359)
T cd07876         132 MLCGIKHLHS-AGIIHRDLKPSNIVVKSDC--------------------TLKILDFGLARTACTNFMMTPYVVTRYYRA  190 (359)
T ss_pred             HHHHHHHHHh-CCcccCCCCHHHEEECCCC--------------------CEEEecCCCccccccCccCCCCcccCCCCC
Confidence            9999999999 9999999999999999987                    7999999999865432    1233455899


Q ss_pred             CCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHH----------------------HHHhhccCCC-----
Q 013230          355 PELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLV----------------------DMLLLKKTFD-----  407 (447)
Q Consensus       355 pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~----------------------~~l~~~~~~~-----  407 (447)
                      ||.+.+.....+.|+|+ +|.+.+++++|..||........+.                      ........++     
T Consensus       191 PE~~~~~~~~~~~DiwS-lG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (359)
T cd07876         191 PEVILGMGYKENVDIWS-VGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQYPGISFE  269 (359)
T ss_pred             chhccCCCCCcchhhHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCCCCCCcchh
Confidence            99999887888889999 9999999999998886432111000                      0000011111     


Q ss_pred             -------------CCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCC
Q 013230          408 -------------RSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       408 -------------~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~  442 (447)
                                   .....++++++||.+||.+|     |++|+|+||||+...
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~~  322 (359)
T cd07876         270 ELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALRHPYITVWY  322 (359)
T ss_pred             hhccccccccccccccccchhHHHHHHHHhccCcccCCCHHHHhcCchhhhhc
Confidence                         01124678999999999999     999999999998543

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=2.5e-33  Score=293.19  Aligned_cols=260  Identities=16%  Similarity=0.137  Sum_probs=182.7

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|+++++||+|+||.||+|.+      ||+|++...         .........|+.+++.+.|...     . .+.+++
T Consensus       130 ~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~---------~~~~~~~~~e~~~l~~l~~~~~-----~-~~~~i~  194 (467)
T PTZ00284        130 RFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNV---------PKYTRDAKIEIQFMEKVRQADP-----A-DRFPLM  194 (467)
T ss_pred             cEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecc---------hhhHHHHHHHHHHHHHHhhcCc-----c-cCccee
Confidence            459999999999999999973      999998632         1233456789999999887322     1 134488


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      .++++|..                             ....+|+|||++ || +|.+++.    +++..++.++.||+.|
T Consensus       195 ~i~~~~~~-----------------------------~~~~~~iv~~~~-g~-~l~~~l~~~~~l~~~~~~~i~~qi~~a  243 (467)
T PTZ00284        195 KIQRYFQN-----------------------------ETGHMCIVMPKY-GP-CLLDWIMKHGPFSHRHLAQIIFQTGVA  243 (467)
T ss_pred             eeEEEEEc-----------------------------CCceEEEEEecc-CC-CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            88887532                             134689999988 45 7777664    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--CEEEEecCCCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--DIFFLDLSQDPELFSG  360 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--g~i~~~~~~~pelf~g  360 (447)
                      |+|||+.+|||||||||+|||++.++... ...   ...........+||+|||+++.....  ..+....|++||++.+
T Consensus       244 L~yLH~~~gIiHrDlKP~NILl~~~~~~~-~~~---~~~~~~~~~~~vkl~DfG~~~~~~~~~~~~~gt~~Y~APE~~~~  319 (467)
T PTZ00284        244 LDYFHTELHLMHTDLKPENILMETSDTVV-DPV---TNRALPPDPCRVRICDLGGCCDERHSRTAIVSTRHYRSPEVVLG  319 (467)
T ss_pred             HHHHHhcCCeecCCCCHHHEEEecCCccc-ccc---cccccCCCCceEEECCCCccccCccccccccCCccccCcHHhhc
Confidence            99999735999999999999998765200 000   00011112235999999988654332  2233455899999999


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhHHHH---HHHHHH-------------------hhc-cCC-CC--------
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLV---YLVDML-------------------LLK-KTF-DR--------  408 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~---~~~~~l-------------------~~~-~~~-~~--------  408 (447)
                      ..+....|||+ +|++.++++.|..||.......   .+.+.+                   ... ..+ +.        
T Consensus       320 ~~~~~~~DiwS-lGvil~elltG~~pf~~~~~~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (467)
T PTZ00284        320 LGWMYSTDMWS-MGCIIYELYTGKLLYDTHDNLEHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLAR  398 (467)
T ss_pred             CCCCcHHHHHH-HHHHHHHHHhCCCCCCCCChHHHHHHHHHHcCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHh
Confidence            88888889999 9999999999998885421111   111100                   000 000 00        


Q ss_pred             --------CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          409 --------SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       409 --------~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                              ....++.+.|||.+||++|     ||+|+|+||||+....
T Consensus       399 ~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~Hp~~~~~~~  446 (467)
T PTZ00284        399 IARARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQMTTHPYVLKYYP  446 (467)
T ss_pred             hhcccchhhhhchHHHHHHHHHhCCcChhhCCCHHHHhcCccccccCC
Confidence                    0012567889999999999     9999999999998643

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-33  Score=281.48  Aligned_cols=235  Identities=21%  Similarity=0.208  Sum_probs=179.8

Q ss_pred             eccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEEE
Q 013230          140 VGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKV  213 (447)
Q Consensus       140 LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~~  213 (447)
                      ||+|+||.||+|++      ||+|++.....     ...........|..++..+....|     ||    |+++++++.
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~-----~~~~~~~~~~~e~~~l~~~~~~~~-----p~----i~~~~~~~~   66 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEI-----VAKKEVAHTIGERNILVRTLLDES-----PF----IVGLKFSFQ   66 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHH-----hhhhHHHHHHHHHHHHHHhccCCC-----Cc----CcceEEEEe
Confidence            79999999999973      99999874321     111223445667777766531011     55    999998854


Q ss_pred             EeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHHHHh
Q 013230          214 CQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVAEAA  289 (447)
Q Consensus       214 ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~ylH~~  289 (447)
                      .                              .+.+|+||||+.+| +|..++.    +++..++.++.||+.||+|||+ 
T Consensus        67 ~------------------------------~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~~~qil~al~~LH~-  114 (330)
T cd05586          67 T------------------------------DSDLYLVTDYMSGG-ELFWHLQKEGRFSEDRAKFYIAELVLALEHLHK-  114 (330)
T ss_pred             c------------------------------CCeEEEEEcCCCCC-hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence            3                              56799999999988 8887765    8999999999999999999999 


Q ss_pred             CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCCCCCCC-C
Q 013230          290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPELFSGPK-G  363 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pelf~g~~-~  363 (447)
                      +||+||||||+|||++.++                    .+||+|||+++.....     .......|++||.+.+.. .
T Consensus       115 ~~ivHrDlkp~Nili~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  174 (330)
T cd05586         115 YDIVYRDLKPENILLDATG--------------------HIALCDFGLSKANLTDNKTTNTFCGTTEYLAPEVLLDEKGY  174 (330)
T ss_pred             CCeEeccCCHHHeEECCCC--------------------CEEEecCCcCcCCCCCCCCccCccCCccccCHHHHcCCCCC
Confidence            9999999999999999987                    7999999998764222     112334589999887643 4


Q ss_pred             CchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc---------CHHHHHc
Q 013230          364 DKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN---------SAKEAIF  434 (447)
Q Consensus       364 ~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d---------sa~elL~  434 (447)
                      ..+.|+|+ +|++.+++++|..|+...........+......++. ..+++++++||++||..|         ++.++++
T Consensus       175 ~~~~Dvws-lGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~ll~  252 (330)
T cd05586         175 TKHVDFWS-LGVLVFEMCCGWSPFYAEDTQQMYRNIAFGKVRFPK-NVLSDEGRQFVKGLLNRNPQHRLGAHRDAVELKE  252 (330)
T ss_pred             CCccceec-cccEEEEeccCCCCCCCCCHHHHHHHHHcCCCCCCC-ccCCHHHHHHHHHHcCCCHHHCCCCCCCHHHHhc
Confidence            56679999 999999999999998765544444444433333332 347899999999999999         6999999


Q ss_pred             CCCCCCCC
Q 013230          435 DPFFSDLI  442 (447)
Q Consensus       435 HPff~~~~  442 (447)
                      ||||.+..
T Consensus       253 h~~~~~~~  260 (330)
T cd05586         253 HPFFADID  260 (330)
T ss_pred             CccccCCC
Confidence            99998653

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.3e-35  Score=292.83  Aligned_cols=239  Identities=21%  Similarity=0.228  Sum_probs=202.1

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |..++.||.|+||.||.|++      ||||.+...+.     .....-.++++|++.|++|+|        ||    +|.
T Consensus        28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGK-----Qs~EKWqDIlKEVrFL~~l~H--------Pn----tie   90 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGK-----QSNEKWQDILKEVRFLRQLRH--------PN----TIE   90 (948)
T ss_pred             HHHHHHhcCCccceeEEeeccCccceeeeeecccccc-----ccHHHHHHHHHHHHHHHhccC--------CC----ccc
Confidence            47779999999999999985      99999887654     444556889999999999999        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCc-cchhhhhc--CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGG-KDLESFVL--LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG-~~L~~~i~--l~~~~~~~i~~Qil~gL~  284 (447)
                      +.++|.-                              +...|+|||||-|. .||.++.+  +.+.+|..|..+.+.||+
T Consensus        91 YkgCyLr------------------------------e~TaWLVMEYClGSAsDlleVhkKplqEvEIAAi~~gaL~gLa  140 (948)
T KOG0577|consen   91 YKGCYLR------------------------------EHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLA  140 (948)
T ss_pred             ccceeec------------------------------cchHHHHHHHHhccHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            9999764                              67799999999842 24444444  889999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-CEEEEecCCCCCCCC---C
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-DIFFLDLSQDPELFS---G  360 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-g~i~~~~~~~pelf~---g  360 (447)
                      |||+ ++.||||||.+|||+...+                    .|||+|||.|.+..+. ..+.+.++|+||+..   .
T Consensus       141 YLHS-~~~IHRDiKAGNILLse~g--------------------~VKLaDFGSAsi~~PAnsFvGTPywMAPEVILAMDE  199 (948)
T KOG0577|consen  141 YLHS-HNRIHRDIKAGNILLSEPG--------------------LVKLADFGSASIMAPANSFVGTPYWMAPEVILAMDE  199 (948)
T ss_pred             HHHH-hhHHhhhccccceEecCCC--------------------eeeeccccchhhcCchhcccCCccccchhHheeccc
Confidence            9999 9999999999999999998                    7999999999887654 446677889999883   2


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHcC
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      ..++..+|||+ +|+..-+......|..|..-+..++.+.-+....-....+|..|+.|+..||++-     |++++|+|
T Consensus       200 GqYdgkvDvWS-LGITCIELAERkPPlFnMNAMSALYHIAQNesPtLqs~eWS~~F~~Fvd~CLqKipqeRptse~ll~H  278 (948)
T KOG0577|consen  200 GQYDGKVDVWS-LGITCIELAERKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQERPTSEELLKH  278 (948)
T ss_pred             cccCCccceee-ccchhhhhhhcCCCccCchHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHhhCcccCCcHHHHhhc
Confidence            25677889999 9999999999999999998888888887555433335679999999999999987     99999999


Q ss_pred             CCCCCC
Q 013230          436 PFFSDL  441 (447)
Q Consensus       436 Pff~~~  441 (447)
                      +|...-
T Consensus       279 ~fv~R~  284 (948)
T KOG0577|consen  279 RFVLRE  284 (948)
T ss_pred             chhccC
Confidence            998643

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=2.6e-33  Score=282.39  Aligned_cols=243  Identities=18%  Similarity=0.233  Sum_probs=185.5

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|.+      +|+|++....      ........+.+|+.+++.++|        +|    |++
T Consensus        19 y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------~n----iv~   80 (355)
T cd07874          19 YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPF------QNQTHAKRAYRELVLMKCVNH--------KN----IIS   80 (355)
T ss_pred             eeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcc------cChHHHHHHHHHHHHHHHhCC--------Cc----hhc
Confidence            49999999999999999963      8999876432      122344677899999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--CCHHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--LNINEARSLLVQVTAGLAV  285 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--l~~~~~~~i~~Qil~gL~y  285 (447)
                      +++++...+.                        .......|+||||+. | +|.+.+.  +++..++.++.|++.||+|
T Consensus        81 ~~~~~~~~~~------------------------~~~~~~~~lv~e~~~-~-~l~~~~~~~l~~~~~~~~~~qi~~aL~~  134 (355)
T cd07874          81 LLNVFTPQKS------------------------LEEFQDVYLVMELMD-A-NLCQVIQMELDHERMSYLLYQMLCGIKH  134 (355)
T ss_pred             eeeeeecccc------------------------ccccceeEEEhhhhc-c-cHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence            9998653221                        112345899999997 3 5666655  8999999999999999999


Q ss_pred             HHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCCCCCCCC
Q 013230          286 AEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDPELFSGP  361 (447)
Q Consensus       286 lH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~pelf~g~  361 (447)
                      ||+ .||+||||||+|||++.++                    .+||+|||+|+.....    ..+....|++||++.+.
T Consensus       135 LH~-~givHrDikp~Nill~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~  193 (355)
T cd07874         135 LHS-AGIIHRDLKPSNIVVKSDC--------------------TLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGM  193 (355)
T ss_pred             HHh-CCcccCCCChHHEEECCCC--------------------CEEEeeCcccccCCCccccCCccccCCccCHHHHcCC
Confidence            999 9999999999999999887                    7999999999876443    22344568999999887


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHH----------------------hhcc--------------C
Q 013230          362 KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDML----------------------LLKK--------------T  405 (447)
Q Consensus       362 ~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l----------------------~~~~--------------~  405 (447)
                      ....+.|+|+ +|++.++++.+..||............+                      ....              .
T Consensus       194 ~~~~~~Diws-lG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (355)
T cd07874         194 GYKENVDIWS-VGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSL  272 (355)
T ss_pred             CCCchhhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhcHHHHHHHhcCCccccccchhhccccc
Confidence            7778889999 9999999999988875432211111100                      0000              0


Q ss_pred             CC----CCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCC
Q 013230          406 FD----RSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       406 ~~----~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~  442 (447)
                      ++    .....+.++++||.+||+.|     |+.|+|+||||+...
T Consensus       273 ~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~hp~~~~~~  318 (355)
T cd07874         273 FPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQHPYINVWY  318 (355)
T ss_pred             cccccccccccchHHHHHHHHHhcCCchhcCCHHHHhcCcchhccc
Confidence            10    01224678999999999999     999999999998553

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=2e-33  Score=279.16  Aligned_cols=233  Identities=17%  Similarity=0.192  Sum_probs=182.2

Q ss_pred             EEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCcccceeeeee
Q 013230          138 VKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      +.||+|+||.||+|++      ||+|++.....     ...........|..++..+ +|        ||    |+++++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~-----~~~~~~~~~~~e~~~l~~~~~~--------~~----i~~~~~   63 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVV-----LIDDDVECTMVEKRVLALAWEN--------PF----LTHLYC   63 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHh-----hhcchHHHHHHHHHHHHhccCC--------CC----ccCeeE
Confidence            4699999999999973      99999875321     1112234567788887754 55        66    999999


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHH
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVA  286 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~yl  286 (447)
                      ++..                              ++.+|+||||+.|| +|..++.    +++..++.++.||+.||+||
T Consensus        64 ~~~~------------------------------~~~~~lv~E~~~~g-~L~~~i~~~~~~~~~~~~~~~~qi~~~l~~l  112 (316)
T cd05620          64 TFQT------------------------------KEHLFFVMEFLNGG-DLMFHIQDKGRFDLYRATFYAAEIVCGLQFL  112 (316)
T ss_pred             EEEe------------------------------CCEEEEEECCCCCC-cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            8643                              56799999999988 9988775    89999999999999999999


Q ss_pred             HHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCCCCCC
Q 013230          287 EAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPELFSGP  361 (447)
Q Consensus       287 H~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pelf~g~  361 (447)
                      |+ .||+||||||+|||++.++                    .+||+|||+++.....     .......|++||++.+.
T Consensus       113 H~-~~ivHrDlkp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  171 (316)
T cd05620         113 HS-KGIIYRDLKLDNVMLDRDG--------------------HIKIADFGMCKENVFGDNRASTFCGTPDYIAPEILQGL  171 (316)
T ss_pred             HH-CCeEecCCCHHHeEECCCC--------------------CEEeCccCCCeecccCCCceeccCCCcCccCHHHHcCC
Confidence            99 9999999999999999887                    7999999998753211     11223458999999887


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CH-HHHHcC
Q 013230          362 KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SA-KEAIFD  435 (447)
Q Consensus       362 ~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa-~elL~H  435 (447)
                      ....+.|+|+ +|++.++++.|..|+...........+......+  +...+.++++||++||..|     ++ +++++|
T Consensus       172 ~~~~~~Diws-lGvil~el~~g~~Pf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~l~~dP~~R~~~~~~~~~h  248 (316)
T cd05620         172 KYTFSVDWWS-FGVLLYEMLIGQSPFHGDDEDELFESIRVDTPHY--PRWITKESKDILEKLFERDPTRRLGVVGNIRGH  248 (316)
T ss_pred             CCCcccchhh-hHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCC--CCCCCHHHHHHHHHHccCCHHHcCCChHHHHcC
Confidence            7777889999 9999999999999987554433333333222222  3457899999999999999     55 689999


Q ss_pred             CCCCCCC
Q 013230          436 PFFSDLI  442 (447)
Q Consensus       436 Pff~~~~  442 (447)
                      |||+...
T Consensus       249 ~~f~~~~  255 (316)
T cd05620         249 PFFKTIN  255 (316)
T ss_pred             CCcCCCC
Confidence            9998763

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=2.4e-33  Score=279.37  Aligned_cols=232  Identities=20%  Similarity=0.205  Sum_probs=181.2

Q ss_pred             EEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHH-HHHhccccccCCCCCCCcccceeeeee
Q 013230          138 VKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVV-LSWTLNHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~-il~~L~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      +.||+|+||+||+|++      +|+|++.....     ........+..|.. +++.++|        ||    |+++++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~e~~~~l~~~~h--------p~----iv~~~~   63 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIV-----LNRKEQKHIMAERNVLLKNVKH--------PF----LVGLHY   63 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHh-----hhhhHHHHHHHHHHHHHHhCCC--------CC----CccEEE
Confidence            4699999999999973      99999875421     11122244556655 4666777        77    999998


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHH
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVA  286 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~yl  286 (447)
                      ++..                              ++.+|+||||+.|| +|..++.    +++..++.++.||+.||+||
T Consensus        64 ~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~qi~~al~~l  112 (325)
T cd05604          64 SFQT------------------------------TEKLYFVLDFVNGG-ELFFHLQRERSFPEPRARFYAAEIASALGYL  112 (325)
T ss_pred             EEec------------------------------CCEEEEEEcCCCCC-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            8543                              56799999999988 8877765    89999999999999999999


Q ss_pred             HHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCCCCCC
Q 013230          287 EAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPELFSGP  361 (447)
Q Consensus       287 H~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pelf~g~  361 (447)
                      |+ .||+||||||+|||++.++                    .+||+|||+++.....     .......|++||.+.+.
T Consensus       113 H~-~givH~Dlkp~NIll~~~~--------------------~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  171 (325)
T cd05604         113 HS-INIVYRDLKPENILLDSQG--------------------HVVLTDFGLCKEGIAQSDTTTTFCGTPEYLAPEVIRKQ  171 (325)
T ss_pred             HH-CCeeecCCCHHHeEECCCC--------------------CEEEeecCCcccCCCCCCCcccccCChhhCCHHHHcCC
Confidence            99 9999999999999999987                    7999999998753221     11223448999999887


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc---------CHHHH
Q 013230          362 KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN---------SAKEA  432 (447)
Q Consensus       362 ~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d---------sa~el  432 (447)
                      ..+.+.|+|+ +|++.++++.|..|+............+.  .........+.++.++|++||..|         +..++
T Consensus       172 ~~~~~~Dvws-lG~il~el~~G~~pf~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~ll~~~p~~R~~~~~~~~~i  248 (325)
T cd05604         172 PYDNTVDWWC-LGAVLYEMLYGLPPFYCRDVAEMYDNILH--KPLVLRPGASLTAWSILEELLEKDRQRRLGAKEDFLEI  248 (325)
T ss_pred             CCCCcCcccc-ccceehhhhcCCCCCCCCCHHHHHHHHHc--CCccCCCCCCHHHHHHHHHHhccCHHhcCCCCCCHHHH
Confidence            7777889999 99999999999999876544443334332  222333457899999999999998         45799


Q ss_pred             HcCCCCCCC
Q 013230          433 IFDPFFSDL  441 (447)
Q Consensus       433 L~HPff~~~  441 (447)
                      ++||||...
T Consensus       249 ~~h~~f~~~  257 (325)
T cd05604         249 QEHPFFESL  257 (325)
T ss_pred             hcCCCcCCC
Confidence            999999875

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=2.2e-33  Score=279.04  Aligned_cols=233  Identities=19%  Similarity=0.192  Sum_probs=186.2

Q ss_pred             EEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhcc-ccccCCCCCCCcccceeeeee
Q 013230          138 VKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN-HLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      +.||+|+||.||+|+      .+|+|++.....     ........+.+|+.+++.+. |        ||    |+++++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~e~~il~~~~~h--------~~----i~~~~~   63 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVI-----LQDDDVECTMTEKRVLALAGKH--------PF----LTQLHS   63 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHH-----hhhhHHHHHHHHHHHHHhccCC--------CC----ccceee
Confidence            469999999999996      399999875421     12223456678999988874 4        66    999999


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHH
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVA  286 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~yl  286 (447)
                      ++..                              .+.+|+||||+.|| +|..++.    +++..++.++.||+.||+||
T Consensus        64 ~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~L  112 (318)
T cd05570          64 CFQT------------------------------KDRLFFVMEYVNGG-DLMFHIQRSGRFDEPRARFYAAEIVLGLQFL  112 (318)
T ss_pred             EEEc------------------------------CCEEEEEEcCCCCC-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            8543                              56799999999988 9887775    89999999999999999999


Q ss_pred             HHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCCCCCC
Q 013230          287 EAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPELFSGP  361 (447)
Q Consensus       287 H~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pelf~g~  361 (447)
                      |+ .||+||||||+|||++.++                    .+||+|||+++.....     .......|++||++.+.
T Consensus       113 H~-~~ivH~dlkp~Nill~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~  171 (318)
T cd05570         113 HE-RGIIYRDLKLDNVLLDSEG--------------------HIKIADFGMCKEGILGGVTTSTFCGTPDYIAPEILSYQ  171 (318)
T ss_pred             Hh-CCeEccCCCHHHeEECCCC--------------------cEEecccCCCeecCcCCCcccceecCccccCHHHhcCC
Confidence            99 9999999999999999987                    7999999999763222     11233458999999888


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CH-----HH
Q 013230          362 KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SA-----KE  431 (447)
Q Consensus       362 ~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa-----~e  431 (447)
                      ..+.+.|+|+ +|++.++++.|..|+...........+..  .....+...+.++++||++||..|     |+     .+
T Consensus       172 ~~~~~~Diws-lGvil~~l~~G~~pf~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~li~~~l~~dP~~R~s~~~~~~~~  248 (318)
T cd05570         172 PYGPAVDWWA-LGVLLYEMLAGQSPFEGDDEDELFQSILE--DEVRYPRWLSKEAKSILKSFLTKNPEKRLGCLPTGEQD  248 (318)
T ss_pred             CCCcchhhhh-HHHHHHHHhhCCCCCCCCCHHHHHHHHHc--CCCCCCCcCCHHHHHHHHHHccCCHHHcCCCCCCCHHH
Confidence            8788889999 89999999999999876544443333332  223334568899999999999999     87     99


Q ss_pred             HHcCCCCCCCC
Q 013230          432 AIFDPFFSDLI  442 (447)
Q Consensus       432 lL~HPff~~~~  442 (447)
                      +++||||+...
T Consensus       249 ll~~~~~~~~~  259 (318)
T cd05570         249 IKGHPFFREID  259 (318)
T ss_pred             HhcCCCcCCCC
Confidence            99999998753

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=4.7e-33  Score=274.99  Aligned_cols=238  Identities=21%  Similarity=0.286  Sum_probs=183.3

Q ss_pred             CCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccce
Q 013230          132 SDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~i  205 (447)
                      ..|+++++||+|+||.||+|++      +|+|++.....       ......+.+|+.++++++|        +|    |
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-------~~~~~~~~~E~~~l~~l~h--------~~----i   66 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHE-------EGAPCTAIREVSLLKDLKH--------AN----I   66 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeecccc-------CCcchhHHHHHHHHHhCCC--------CC----c
Confidence            4569999999999999999973      89998875421       1223457789999999998        88    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVT  280 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil  280 (447)
                      +++++++..                              ++..|+||||+. | +|.+++.     +++..++.++.||+
T Consensus        67 v~~~~~~~~------------------------------~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~~~~~~~~~qi~  114 (309)
T cd07872          67 VTLHDIVHT------------------------------DKSLTLVFEYLD-K-DLKQYMDDCGNIMSMHNVKIFLYQIL  114 (309)
T ss_pred             ceEEEEEee------------------------------CCeEEEEEeCCC-C-CHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            999998543                              567999999997 4 7777664     78999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDP  355 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~p  355 (447)
                      .||+|||+ .||+||||||+|||++.++                    .+||+|||+++.....     .......|++|
T Consensus       115 ~aL~~lH~-~~ivH~dlkp~Nill~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aP  173 (309)
T cd07872         115 RGLAYCHR-RKVLHRDLKPQNLLINERG--------------------ELKLADFGLARAKSVPTKTYSNEVVTLWYRPP  173 (309)
T ss_pred             HHHHHHHH-CCeecCCCCHHHEEECCCC--------------------CEEECccccceecCCCccccccccccccccCC
Confidence            99999999 9999999999999999887                    7999999999764322     11234458899


Q ss_pred             CCCCCC-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh-------------------hccCCC--------
Q 013230          356 ELFSGP-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL-------------------LKKTFD--------  407 (447)
Q Consensus       356 elf~g~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~-------------------~~~~~~--------  407 (447)
                      |.+.+. ....+.|+|+ +|.+.+++++|..|+........+.....                   ....++        
T Consensus       174 E~~~~~~~~~~~~Diws-lG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (309)
T cd07872         174 DVLLGSSEYSTQIDMWG-VGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETWPGISSNDEFKNYNFPKYKPQPLI  252 (309)
T ss_pred             HHHhCCCCCCcHHHHHH-HHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhhcchhhhhhhhcCccCCCchh
Confidence            988653 3456679999 99999999999988754322111111100                   000011        


Q ss_pred             -CCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCC
Q 013230          408 -RSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       408 -~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~  442 (447)
                       ....++++++|||++||.+|     ||+|+|+||||+.+.
T Consensus       253 ~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h~~~~~~~  293 (309)
T cd07872         253 NHAPRLDTEGIELLTKFLQYESKKRISAEEAMKHAYFRSLG  293 (309)
T ss_pred             hhccCCCHHHHHHHHHhccCChhhCCCHHHHhcChhhhhcc
Confidence             11246889999999999999     999999999999765

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=2.3e-33  Score=278.71  Aligned_cols=233  Identities=19%  Similarity=0.204  Sum_probs=182.0

Q ss_pred             EEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCcccceeeeee
Q 013230          138 VKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      +.||+|+||.||+|++      ||+|++.....     ......+....|..++..+ +|        ||    |+++++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~~~~~e~~~l~~~~~h--------p~----i~~~~~   63 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVV-----LEDDDVECTMVERRVLALAWEH--------PF----LTHLFC   63 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHh-----hhhhhHHHHHHHHHHHHhccCC--------CC----ccceee
Confidence            4699999999999973      99999875421     1122334556677777654 45        66    999998


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHH
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVA  286 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~yl  286 (447)
                      ++..                              ++.+|+||||+.|| +|..++.    +++..++.++.||+.||+||
T Consensus        64 ~~~~------------------------------~~~~~lv~e~~~gg-~L~~~~~~~~~~~~~~~~~~~~qi~~al~~L  112 (316)
T cd05592          64 TFQT------------------------------KEHLFFVMEYLNGG-DLMFHIQSSGRFDEARARFYAAEIICGLQFL  112 (316)
T ss_pred             EEEc------------------------------CCEEEEEEcCCCCC-cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            8543                              56799999999988 9988875    89999999999999999999


Q ss_pred             HHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCCCCCC
Q 013230          287 EAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPELFSGP  361 (447)
Q Consensus       287 H~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pelf~g~  361 (447)
                      |+ .||+||||||+|||++.++                    .+||+|||+|+.....     .......|++||.+.+.
T Consensus       113 H~-~~ivH~dlkp~Nill~~~~--------------------~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~  171 (316)
T cd05592         113 HK-KGIIYRDLKLDNVLLDKDG--------------------HIKIADFGMCKENMNGEGKASTFCGTPDYIAPEILKGQ  171 (316)
T ss_pred             HH-CCEEeCCCCHHHeEECCCC--------------------CEEEccCcCCeECCCCCCccccccCCccccCHHHHcCC
Confidence            99 9999999999999999887                    7999999999864322     11233458999999887


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C-HHHHHcC
Q 013230          362 KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S-AKEAIFD  435 (447)
Q Consensus       362 ~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s-a~elL~H  435 (447)
                      ..+...|+|+ +|++.+++..|..|+...........+..  .....+...+.++.+||++||..|     + +.++++|
T Consensus       172 ~~~~~~Dvws-lG~il~ell~G~~Pf~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~ll~~~l~~~P~~R~~~~~~l~~h  248 (316)
T cd05592         172 KYNESVDWWS-FGVLLYEMLIGQSPFHGEDEDELFDSILN--DRPHFPRWISKEAKDCLSKLFERDPTKRLGVDGDIRQH  248 (316)
T ss_pred             CCCCcccchh-HHHHHHHHHhCCCCCCCCCHHHHHHHHHc--CCCCCCCCCCHHHHHHHHHHccCCHHHcCCChHHHHcC
Confidence            7777789999 99999999999999876544333333332  222234568899999999999999     4 5689999


Q ss_pred             CCCCCCC
Q 013230          436 PFFSDLI  442 (447)
Q Consensus       436 Pff~~~~  442 (447)
                      |||....
T Consensus       249 ~~~~~~~  255 (316)
T cd05592         249 PFFRGID  255 (316)
T ss_pred             cccCCCC
Confidence            9998753

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=2.2e-33  Score=273.66  Aligned_cols=232  Identities=20%  Similarity=0.167  Sum_probs=181.4

Q ss_pred             eccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEEE
Q 013230          140 VGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKV  213 (447)
Q Consensus       140 LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~~  213 (447)
                      ||+|+||+||+|.+      +|+|++.....     ......+.+..|+.+++.++|        +|    |+++.+++.
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~-----~~~~~~~~~~~E~~il~~l~~--------~~----i~~~~~~~~   63 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRL-----KKRKGYEGAMVEKRILAKVHS--------RF----IVSLAYAFQ   63 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHH-----hhhHHHHHHHHHHHHHHhCCC--------Cc----EeeeeEEEc
Confidence            79999999999873      99998875422     112233567889999999988        88    999988753


Q ss_pred             EeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHHHHHHHHH
Q 013230          214 CQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQVTAGLAV  285 (447)
Q Consensus       214 ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Qil~gL~y  285 (447)
                      .                              ++.+|+||||+.+| +|..++.        +++..++.++.||+.||+|
T Consensus        64 ~------------------------------~~~~~lv~e~~~~g-~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~  112 (280)
T cd05608          64 T------------------------------KTDLCLVMTIMNGG-DLRYHIYNVDEENPGFPEPRACFYTAQIISGLEH  112 (280)
T ss_pred             C------------------------------CCeEEEEEeCCCCC-CHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHH
Confidence            2                              56699999999988 8887652        8899999999999999999


Q ss_pred             HHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCCCCC
Q 013230          286 AEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPELFSG  360 (447)
Q Consensus       286 lH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pelf~g  360 (447)
                      ||+ .||+||||||+|||++.++                    .+||+|||+++.....     +......|++||.+.+
T Consensus       113 lH~-~~i~H~dlkp~Nili~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~  171 (280)
T cd05608         113 LHQ-RRIIYRDLKPENVLLDNDG--------------------NVRISDLGLAVELKDGQSKTKGYAGTPGFMAPELLQG  171 (280)
T ss_pred             HHH-CCcccCCCCHHHEEECCCC--------------------CEEEeeCccceecCCCCccccccCCCcCccCHHHhcC
Confidence            999 9999999999999999887                    7999999999765432     1122345889999988


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhH---HHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----------
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVL---WLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----------  427 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~---~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----------  427 (447)
                      ...+.+.|+|+ +|.+.++++++..|+....   .......... ......+...++++++|+.+||..|          
T Consensus       172 ~~~~~~~Dvws-lG~il~el~~g~~pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~  249 (280)
T cd05608         172 EEYDFSVDYFA-LGVTLYEMIAARGPFRARGEKVENKELKQRIL-NDSVTYPDKFSPASKSFCEALLAKDPEKRLGFRDG  249 (280)
T ss_pred             CCCCccccHHH-HHHHHHHHHhCCCCCCCCCcchhHHHHHHhhc-ccCCCCcccCCHHHHHHHHHHhcCCHHHhcCCCCC
Confidence            77777789999 8999999999998885321   1111111111 1222334568899999999999999          


Q ss_pred             CHHHHHcCCCCCCCC
Q 013230          428 SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 sa~elL~HPff~~~~  442 (447)
                      |++++++||||++..
T Consensus       250 ~~~~~l~h~~~~~~~  264 (280)
T cd05608         250 NCDGLRTHPLFRDLN  264 (280)
T ss_pred             CHHHHhcChhhhcCC
Confidence            789999999999864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=2.7e-33  Score=279.89  Aligned_cols=234  Identities=19%  Similarity=0.196  Sum_probs=183.1

Q ss_pred             EEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCcccceeeeee
Q 013230          138 VKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      +.||+|+||.||+|++      +|+|++.....     ........+.+|+.++..+ +|        ||    |+++++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~E~~~l~~~~~h--------p~----iv~~~~   63 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELV-----NDDEDIDWVQTEKHVFEQASNH--------PF----LVGLHS   63 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHh-----cchhHHHHHHHHHHHHHhcCCC--------Cc----CCceee
Confidence            4699999999999973      99999875421     1222335677898888776 45        66    999999


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHH
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVA  286 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~yl  286 (447)
                      ++..                              ++.+|+||||+.+| +|..++.    +++..++.++.||+.||+||
T Consensus        64 ~~~~------------------------------~~~~~lv~E~~~~~-~L~~~~~~~~~l~~~~~~~i~~qi~~~l~~l  112 (329)
T cd05618          64 CFQT------------------------------ESRLFFVIEYVNGG-DLMFHMQRQRKLPEEHARFYSAEISLALNYL  112 (329)
T ss_pred             EEEe------------------------------CCEEEEEEeCCCCC-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            8654                              56799999999988 8887764    89999999999999999999


Q ss_pred             HHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCCCCCC
Q 013230          287 EAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPELFSGP  361 (447)
Q Consensus       287 H~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pelf~g~  361 (447)
                      |+ +||+||||||+|||++.++                    .+||+|||+++.....+     ......|++||++.+.
T Consensus       113 H~-~~ivH~Dikp~Nili~~~~--------------------~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  171 (329)
T cd05618         113 HE-RGIIYRDLKLDNVLLDSEG--------------------HIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGE  171 (329)
T ss_pred             HH-CCeeeCCCCHHHEEECCCC--------------------CEEEeeCCccccccCCCCccccccCCccccCHHHHcCC
Confidence            99 9999999999999999987                    79999999997642221     1223458899999887


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCChh--------HHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C
Q 013230          362 KGDKQFDTYRKMKKVTEDQWEGSFPKTNV--------LWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S  428 (447)
Q Consensus       362 ~~~~~~di~s~lg~~~~~~~~~~~p~~~~--------~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s  428 (447)
                      ..+.+.|+|+ +|.+.++++.|..|+...        ....++.+... ......+...+.++++||++||++|     |
T Consensus       172 ~~~~~~Diws-lG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~-~~~~~~p~~~~~~~~~ll~~~L~~dP~~R~~  249 (329)
T cd05618         172 DYGFSVDWWA-LGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVIL-EKQIRIPRSLSVKAASVLKSFLNKDPKERLG  249 (329)
T ss_pred             CCCCccceec-ccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHh-cCCCCCCCCCCHHHHHHHHHHhcCCHHHcCC
Confidence            7777889999 999999999999888421        11122222222 2233345678999999999999999     4


Q ss_pred             ------HHHHHcCCCCCCCC
Q 013230          429 ------AKEAIFDPFFSDLI  442 (447)
Q Consensus       429 ------a~elL~HPff~~~~  442 (447)
                            +.++++||||++..
T Consensus       250 ~~~~~~~~~i~~hp~f~~~~  269 (329)
T cd05618         250 CHPQTGFADIQGHPFFRNVD  269 (329)
T ss_pred             CCCCCCHHHHhcCCCCCCCC
Confidence                  58999999998763

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=3.6e-33  Score=282.42  Aligned_cols=246  Identities=19%  Similarity=0.260  Sum_probs=186.3

Q ss_pred             hhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCc
Q 013230          128 FSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA  201 (447)
Q Consensus       128 ~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~  201 (447)
                      .++|   ++++.||+|+||.||+|.+      +|+|++....      ........+.+|+.+++.++|        || 
T Consensus        23 ~~~y---~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------~~-   84 (364)
T cd07875          23 LKRY---QNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPF------QNQTHAKRAYRELVLMKCVNH--------KN-   84 (364)
T ss_pred             hcce---eEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccc------cCchhHHHHHHHHHHHHhcCC--------CC-
Confidence            4455   9999999999999999973      9999886432      122344677899999999998        88 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--CCHHHHHHHHHHH
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--LNINEARSLLVQV  279 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--l~~~~~~~i~~Qi  279 (447)
                         |+++++++.....                        ......+|+||||+. | +|.+++.  +++..++.++.|+
T Consensus        85 ---ii~~~~~~~~~~~------------------------~~~~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~~~~~~qi  135 (364)
T cd07875          85 ---IIGLLNVFTPQKS------------------------LEEFQDVYIVMELMD-A-NLCQVIQMELDHERMSYLLYQM  135 (364)
T ss_pred             ---ccccceeeccccc------------------------ccccCeEEEEEeCCC-C-CHHHHHHhcCCHHHHHHHHHHH
Confidence               9999988643110                        112345899999997 3 6666665  8899999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDP  355 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~p  355 (447)
                      +.||+|||+ +||+||||||+|||++.++                    .+||+|||+|+.....    ..+....|++|
T Consensus       136 ~~aL~~LH~-~~ivH~Dlkp~NIll~~~~--------------------~~kL~DfG~a~~~~~~~~~~~~~~t~~y~aP  194 (364)
T cd07875         136 LCGIKHLHS-AGIIHRDLKPSNIVVKSDC--------------------TLKILDFGLARTAGTSFMMTPYVVTRYYRAP  194 (364)
T ss_pred             HHHHHHHhh-CCeecCCCCHHHEEECCCC--------------------cEEEEeCCCccccCCCCcccCCcccCCcCCH
Confidence            999999999 9999999999999999887                    7999999999875443    22334558999


Q ss_pred             CCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHH----------------------hhccC--------
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDML----------------------LLKKT--------  405 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l----------------------~~~~~--------  405 (447)
                      |++.+...+.+.|+|+ +|++.+++..|..||............+                      .....        
T Consensus       195 E~~~~~~~~~~~DiwS-lG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (364)
T cd07875         195 EVILGMGYKENVDIWS-VGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEK  273 (364)
T ss_pred             HHHhCCCCCchhhHHh-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhhHHHHHHHhhCCCcCCCChHh
Confidence            9998877778889999 9999999999988875432111111111                      00000        


Q ss_pred             ------CCC----CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCC
Q 013230          406 ------FDR----SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       406 ------~~~----~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~  442 (447)
                            ++.    ....+.+++|||.+||++|     ||+|+|+||||..+.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~hp~~~~~~  325 (364)
T cd07875         274 LFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVWY  325 (364)
T ss_pred             hCccccccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhcCccccccc
Confidence                  000    1123568999999999999     999999999998643

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=3.9e-33  Score=277.14  Aligned_cols=233  Identities=18%  Similarity=0.209  Sum_probs=182.5

Q ss_pred             EEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCcccceeeeee
Q 013230          138 VKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      +.||+|+||+||+|++      ||+|++.....     ...........|..++..+ +|        ||    |+++++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~~~~~e~~~l~~~~~h--------p~----iv~~~~   63 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVV-----LMDDDVECTMVEKRVLSLAWEH--------PF----LTHLYC   63 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHh-----hhcchHHHHHHHHHHHHhccCC--------Cc----CcceEE
Confidence            4699999999999973      99999875421     1112234567788887764 55        67    999999


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHH
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVA  286 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~yl  286 (447)
                      ++..                              .+.+|+||||+.|| +|..++.    +++..++.++.||+.||+||
T Consensus        64 ~~~~------------------------------~~~~~lv~ey~~~g-~L~~~l~~~~~~~~~~~~~~~~qi~~al~~L  112 (316)
T cd05619          64 TFQT------------------------------KENLFFVMEYLNGG-DLMFHIQSCHKFDLPRATFYAAEIICGLQFL  112 (316)
T ss_pred             EEEe------------------------------CCEEEEEEeCCCCC-cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            8643                              56699999999988 9988875    89999999999999999999


Q ss_pred             HHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCCCCCC
Q 013230          287 EAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPELFSGP  361 (447)
Q Consensus       287 H~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pelf~g~  361 (447)
                      |+ .||+||||||+|||++.++                    .+||+|||+++.....     .......|++||.+.+.
T Consensus       113 H~-~~ivHrdikp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  171 (316)
T cd05619         113 HS-KGIVYRDLKLDNILLDTDG--------------------HIKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILLGQ  171 (316)
T ss_pred             Hh-CCeEeCCCCHHHEEECCCC--------------------CEEEccCCcceECCCCCCceeeecCCccccCHHHHcCC
Confidence            99 9999999999999999987                    7999999999764221     11223458999999887


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH-HHHcC
Q 013230          362 KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK-EAIFD  435 (447)
Q Consensus       362 ~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~-elL~H  435 (447)
                      ..+.+.|+|+ +|++.+++..|..|+..................  .+...+.++++||.+||+.|     ++. ++++|
T Consensus       172 ~~~~~~Dvws-lG~il~el~~G~~pf~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~h  248 (316)
T cd05619         172 KYNTSVDWWS-FGVLLYEMLIGQSPFHGHDEEELFQSIRMDNPC--YPRWLTREAKDILVKLFVREPERRLGVKGDIRQH  248 (316)
T ss_pred             CCCchhhhhh-HHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCC--CCccCCHHHHHHHHHHhccCHhhcCCChHHHHcC
Confidence            7778889999 999999999999998654433333333222222  23458899999999999999     775 89999


Q ss_pred             CCCCCCC
Q 013230          436 PFFSDLI  442 (447)
Q Consensus       436 Pff~~~~  442 (447)
                      |||+++.
T Consensus       249 ~~~~~~~  255 (316)
T cd05619         249 PFFREID  255 (316)
T ss_pred             cccCCCC
Confidence            9998864

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=7.9e-33  Score=270.39  Aligned_cols=237  Identities=20%  Similarity=0.177  Sum_probs=186.6

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||.||+|.+      ||+|++.....     ........+.+|+.+++.++|        +|    |++
T Consensus         2 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~~~~~~E~~~l~~l~h--------~~----iv~   64 (285)
T cd05605           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRI-----KKRKGEAMALNEKQILEKVNS--------RF----VVS   64 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhh-----hhhhhHHHHHHHHHHHHhcCC--------CC----Eee
Confidence            68899999999999999873      99998874321     111223456789999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +++.+.                              .++.+|+||||+.+| +|..++.      +++..++.++.|++.
T Consensus        65 ~~~~~~------------------------------~~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~qi~~  113 (285)
T cd05605          65 LAYAYE------------------------------TKDALCLVLTLMNGG-DLKFHIYNMGNPGFDEERAVFYAAEITC  113 (285)
T ss_pred             eeeeec------------------------------CCCeEEEEEeccCCC-cHHHHHHhcCcCCCCHHHHHHHHHHHHH
Confidence            998843                              256799999999988 8887653      889999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPEL  357 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pel  357 (447)
                      ||.|||+ .||+||||||+|||++.++                    .++|+|||+++......    .+....|++||.
T Consensus       114 ~l~~lH~-~~ivH~dlkp~Nil~~~~~--------------------~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~  172 (285)
T cd05605         114 GLEDLHR-ERIVYRDLKPENILLDDYG--------------------HIRISDLGLAVEIPEGETIRGRVGTVGYMAPEV  172 (285)
T ss_pred             HHHHHHH-CCcEecCCCHHHEEECCCC--------------------CEEEeeCCCceecCCCCccccccCCCCccCcHH
Confidence            9999999 9999999999999999887                    79999999998754321    122345889999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHH---HHHHHHhhccCCCCCccchHHHHHHHHHhcccc-------
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLV---YLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-------  427 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~---~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-------  427 (447)
                      +.+...+...|+|+ +|.+.++++.|..|+.......   .....+. ......+..++..+++|+.+||..|       
T Consensus       173 ~~~~~~~~~~Diws-~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~  250 (285)
T cd05605         173 VKNERYTFSPDWWG-LGCLIYEMIEGKSPFRQRKEKVKREEVERRVK-EDQEEYSEKFSEAARSICRQLLTKDPGFRLGC  250 (285)
T ss_pred             hcCCCCCccccchh-HHHHHHHHHHCCCCCCCCchhhHHHHHHHHhh-hcccccCcccCHHHHHHHHHHccCCHHHhcCC
Confidence            98777677779999 8999999999999986532211   1111111 1122233568899999999999999       


Q ss_pred             ---CHHHHHcCCCCCCC
Q 013230          428 ---SAKEAIFDPFFSDL  441 (447)
Q Consensus       428 ---sa~elL~HPff~~~  441 (447)
                         +++++++||||...
T Consensus       251 ~~~~~~~l~~~~~~~~~  267 (285)
T cd05605         251 RGEGAEEVKAHPFFRTA  267 (285)
T ss_pred             CCCCHHHHhcCcCccCC
Confidence               68899999999875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-34  Score=308.53  Aligned_cols=242  Identities=19%  Similarity=0.210  Sum_probs=196.7

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      ||++++.||+|+||.|.+++.      ||+|++.+-.-     .......-+..|-.||..-+.        +=    |+
T Consensus        76 DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eM-----lKr~~tA~F~EERDimv~~ns--------~W----iv  138 (1317)
T KOG0612|consen   76 DFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEM-----LKRAETACFREERDIMVFGNS--------EW----IV  138 (1317)
T ss_pred             hhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHH-----hhchhHHHHHHHhHHHHcCCc--------HH----HH
Confidence            579999999999999999984      89998875321     111223456778888865543        22    77


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      .++-+                              |.++..+|+||||+.|| ||..++.    ++++.+++|+..|+.|
T Consensus       139 ~LhyA------------------------------FQD~~~LYlVMdY~pGG-DlltLlSk~~~~pE~~ArFY~aEiVlA  187 (1317)
T KOG0612|consen  139 QLHYA------------------------------FQDERYLYLVMDYMPGG-DLLTLLSKFDRLPEDWARFYTAEIVLA  187 (1317)
T ss_pred             HHHHH------------------------------hcCccceEEEEecccCc-hHHHHHhhcCCChHHHHHHHHHHHHHH
Confidence            77766                              44578899999999999 9998886    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEEEEec------CCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDL------SQDPE  356 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i~~~~------~~~pe  356 (447)
                      |.-||+ .|+|||||||+||||+..|                    +|||+|||.+-.+..+|.+....      |..||
T Consensus       188 ldslH~-mgyVHRDiKPDNvLld~~G--------------------HikLADFGsClkm~~dG~V~s~~aVGTPDYISPE  246 (1317)
T KOG0612|consen  188 LDSLHS-MGYVHRDIKPDNVLLDKSG--------------------HIKLADFGSCLKMDADGTVRSSVAVGTPDYISPE  246 (1317)
T ss_pred             HHHHHh-ccceeccCCcceeEecccC--------------------cEeeccchhHHhcCCCCcEEeccccCCCCccCHH
Confidence            999999 9999999999999999999                    99999999998888777654433      77777


Q ss_pred             CCC----C-CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhcc--CCCCCccchHHHHHHHHHhcccc--
Q 013230          357 LFS----G-PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKK--TFDRSSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       357 lf~----g-~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~--~~~~~~~~s~~l~dLl~~mL~~d--  427 (447)
                      +..    | ..+...+|.|+ +|++.|+|+-|-.||+.........+++.-+.  .||....+|.+++|||.++|.--  
T Consensus       247 vLqs~~~~~g~yG~ecDwWS-lGV~~YEMlyG~TPFYadslveTY~KIm~hk~~l~FP~~~~VSeeakdLI~~ll~~~e~  325 (1317)
T KOG0612|consen  247 VLQSQGDGKGEYGRECDWWS-LGVFMYEMLYGETPFYADSLVETYGKIMNHKESLSFPDETDVSEEAKDLIEALLCDREV  325 (1317)
T ss_pred             HHHhhcCCccccCCccchhh-hHHHHHHHHcCCCcchHHHHHHHHHHHhchhhhcCCCcccccCHHHHHHHHHHhcChhh
Confidence            773    2 23445569999 99999999999999998877777777775543  45544679999999999999876  


Q ss_pred             -----CHHHHHcCCCCCCCCCC
Q 013230          428 -----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       428 -----sa~elL~HPff~~~~~~  444 (447)
                           .++++..||||.++.++
T Consensus       326 RLgrngiedik~HpFF~g~~W~  347 (1317)
T KOG0612|consen  326 RLGRNGIEDIKNHPFFEGIDWD  347 (1317)
T ss_pred             hcccccHHHHHhCccccCCChh
Confidence                 69999999999988663

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=4.3e-33  Score=277.00  Aligned_cols=233  Identities=20%  Similarity=0.191  Sum_probs=182.1

Q ss_pred             EEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHH-HHHhccccccCCCCCCCcccceeeeee
Q 013230          138 VKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVV-LSWTLNHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~-il~~L~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      +.||+|+||.||+|++      +|+|++.....     ........+..|.. +++.++|        ||    |+++++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~e~~~~l~~~~h--------~~----iv~~~~   63 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTI-----LKKKEQNHIMAERNVLLKNLKH--------PF----LVGLHY   63 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHH-----HHhhHHHHHHHHHHHHHHhCCC--------CC----ccceee
Confidence            4699999999999974      99999874321     11122344555654 5777877        88    999998


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHH
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVA  286 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~yl  286 (447)
                      ++..                              .+..|+||||+.|| +|...+.    +++..++.++.||+.||+||
T Consensus        64 ~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~l  112 (321)
T cd05603          64 SFQT------------------------------AEKLYFVLDYVNGG-ELFFHLQRERCFLEPRARFYAAEVASAIGYL  112 (321)
T ss_pred             EEEc------------------------------CCEEEEEEcCCCCC-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            8532                              56799999999988 8877664    88999999999999999999


Q ss_pred             HHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-C----EEEEecCCCCCCCCCC
Q 013230          287 EAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-D----IFFLDLSQDPELFSGP  361 (447)
Q Consensus       287 H~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-g----~i~~~~~~~pelf~g~  361 (447)
                      |+ .||+||||||+|||++.++                    .+||+|||+++..... +    ......|++||.+.+.
T Consensus       113 H~-~~ivH~Dlkp~NIll~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  171 (321)
T cd05603         113 HS-LNIIYRDLKPENILLDSQG--------------------HVVLTDFGLCKEGVEPEETTSTFCGTPEYLAPEVLRKE  171 (321)
T ss_pred             HH-CCeEeccCCHHHeEECCCC--------------------CEEEccCCCCccCCCCCCccccccCCcccCCHHHhcCC
Confidence            99 9999999999999999987                    7999999998763221 1    1223348999999887


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc---------CHHHH
Q 013230          362 KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN---------SAKEA  432 (447)
Q Consensus       362 ~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d---------sa~el  432 (447)
                      ..+.+.|+|+ +|++.++++.|..|+...........++.  .....+...+.++.++|.+||+.|         ++.++
T Consensus       172 ~~~~~~Diws-lG~il~el~~g~~pf~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~  248 (321)
T cd05603         172 PYDRTVDWWC-LGAVLYEMLYGLPPFYSRDVSQMYDNILH--KPLQLPGGKTVAACDLLVGLLHKDQRRRLGAKADFLEI  248 (321)
T ss_pred             CCCCcCcccc-cchhhhhhhcCCCCCCCCCHHHHHHHHhc--CCCCCCCCCCHHHHHHHHHHccCCHhhcCCCCCCHHHH
Confidence            7777789999 99999999999999976544444444442  233444567899999999999999         45699


Q ss_pred             HcCCCCCCCC
Q 013230          433 IFDPFFSDLI  442 (447)
Q Consensus       433 L~HPff~~~~  442 (447)
                      ++||||....
T Consensus       249 ~~~~~~~~~~  258 (321)
T cd05603         249 KNHVFFSPIN  258 (321)
T ss_pred             hCCCCcCCCC
Confidence            9999998653

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=4.6e-33  Score=277.84  Aligned_cols=235  Identities=17%  Similarity=0.177  Sum_probs=184.4

Q ss_pred             EEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeE
Q 013230          138 VKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEI  211 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~  211 (447)
                      +.||+|+||.||+|+.      +|+|++.....     ........+.+|+.++.++.+  |     +|    |+.++++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~e~~~~~~~~~--~-----~~----i~~~~~~   64 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELV-----HDDEDIDWVQTEKHVFEQASS--N-----PF----LVGLHSC   64 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHh-----hhhhHHHHHHHHHHHHHhhcC--C-----CC----EeeEEEE
Confidence            4699999999999973      99999875421     122334567899999988853  1     56    9999998


Q ss_pred             EEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHHH
Q 013230          212 KVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVAE  287 (447)
Q Consensus       212 ~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~ylH  287 (447)
                      +..                              .+.+|+||||+.|| +|..++.    +++..++.++.||+.||+|||
T Consensus        65 ~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~l~~~~~~~~~~qi~~al~~lH  113 (327)
T cd05617          65 FQT------------------------------TSRLFLVIEYVNGG-DLMFHMQRQRKLPEEHARFYAAEICIALNFLH  113 (327)
T ss_pred             EEe------------------------------CCEEEEEEeCCCCC-cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            643                              56799999999988 9987764    999999999999999999999


Q ss_pred             HhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCCCCCCC
Q 013230          288 AAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPELFSGPK  362 (447)
Q Consensus       288 ~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pelf~g~~  362 (447)
                      + .||+||||||+|||++.++                    .+||+|||+++.....+     ......|++||++.+..
T Consensus       114 ~-~~ivHrDlkp~Nili~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  172 (327)
T cd05617         114 E-RGIIYRDLKLDNVLLDADG--------------------HIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEE  172 (327)
T ss_pred             H-CCeeccCCCHHHEEEeCCC--------------------CEEEeccccceeccCCCCceecccCCcccCCHHHHCCCC
Confidence            9 9999999999999999987                    79999999998632211     12234589999998877


Q ss_pred             CCchHHHHHhhccCCcccccCCCCCChh------HHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C---
Q 013230          363 GDKQFDTYRKMKKVTEDQWEGSFPKTNV------LWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S---  428 (447)
Q Consensus       363 ~~~~~di~s~lg~~~~~~~~~~~p~~~~------~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s---  428 (447)
                      .+.+.|+|+ +|++.++++.|..|+...      ........... ....+.+...+..+.+||++||.+|     +   
T Consensus       173 ~~~~~Diws-lGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~  250 (327)
T cd05617         173 YGFSVDWWA-LGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVIL-EKPIRIPRFLSVKASHVLKGFLNKDPKERLGCQP  250 (327)
T ss_pred             CCchheeeh-hHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHH-hCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCCC
Confidence            777889999 999999999999998421      11222333332 2233445668899999999999999     4   


Q ss_pred             ---HHHHHcCCCCCCCC
Q 013230          429 ---AKEAIFDPFFSDLI  442 (447)
Q Consensus       429 ---a~elL~HPff~~~~  442 (447)
                         ..++++||||+.+.
T Consensus       251 ~~~~~~i~~h~~f~~~~  267 (327)
T cd05617         251 QTGFSDIKSHTFFRSID  267 (327)
T ss_pred             CCCHHHHHcCCCCCCCC
Confidence               57999999998764

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=9.7e-33  Score=278.96  Aligned_cols=229  Identities=21%  Similarity=0.219  Sum_probs=174.0

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|+.      ||+|+....              ....|+.++++++|        +|    |+
T Consensus        67 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~--------------~~~~E~~~l~~l~h--------~~----iv  120 (357)
T PHA03209         67 GYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG--------------TTLIEAMLLQNVNH--------PS----VI  120 (357)
T ss_pred             CcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc--------------ccHHHHHHHHhCCC--------CC----Cc
Confidence            579999999999999999973      888864321              13579999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      ++++++..                              ....|+||||+. | +|.+++.     +++..++.++.||+.
T Consensus       121 ~~~~~~~~------------------------------~~~~~lv~e~~~-~-~l~~~l~~~~~~~~~~~~~~i~~qi~~  168 (357)
T PHA03209        121 RMKDTLVS------------------------------GAITCMVLPHYS-S-DLYTYLTKRSRPLPIDQALIIEKQILE  168 (357)
T ss_pred             ChhheEEe------------------------------CCeeEEEEEccC-C-cHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence            99998654                              456899999996 5 7777764     899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDPEL  357 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~pel  357 (447)
                      ||.|||+ +||+||||||+|||++.++                    .+||+|||+++.....    +......|++||.
T Consensus       169 aL~~LH~-~~ivHrDlkp~Nill~~~~--------------------~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~  227 (357)
T PHA03209        169 GLRYLHA-QRIIHRDVKTENIFINDVD--------------------QVCIGDLGAAQFPVVAPAFLGLAGTVETNAPEV  227 (357)
T ss_pred             HHHHHHH-CCeecCCCCHHHEEECCCC--------------------CEEEecCccccccccCcccccccccccccCCee
Confidence            9999999 9999999999999999887                    7999999999764322    2233455899999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCC-Ch-----hH----HHHHHHHHHh----hccCCC----------------
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPK-TN-----VL----WLVYLVDMLL----LKKTFD----------------  407 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~-~~-----~~----~~~~~~~~l~----~~~~~~----------------  407 (447)
                      +.+.....+.|+|+ +|++.++++.+..|+ ..     ..    ....+.+.+.    ....++                
T Consensus       228 ~~~~~~~~~~DiwS-lGvvl~ell~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (357)
T PHA03209        228 LARDKYNSKADIWS-AGIVLFEMLAYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKVHPEEFPRDPGSRLVRGFIEYAS  306 (357)
T ss_pred             cCCCCCCchhhHHH-HHHHHHHHHHcCCccccCCCCcHHHHHHHHHHHHHHHHHHhccChhhcCCCCccHHHHHHHhhcc
Confidence            98877788889999 899988887643222 11     00    0011111110    001111                


Q ss_pred             ------------CCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCC
Q 013230          408 ------------RSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       408 ------------~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~  441 (447)
                                  .....+.++.+||.+||++|     ||.|+|+||||+++
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rpta~e~l~hp~f~~~  357 (357)
T PHA03209        307 LERQPYTRYPCFQRVNLPIDGEFLVHKMLTFDAAMRPSAEEILNYPMFAQL  357 (357)
T ss_pred             cCCCcccccHHHhccCCCchHHHHHHHHHcCCcccCcCHHHHhcCchhccC
Confidence                        01135678889999999999     99999999999874

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-33  Score=281.11  Aligned_cols=233  Identities=21%  Similarity=0.261  Sum_probs=191.5

Q ss_pred             eEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeee
Q 013230          137 IVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       137 ~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      .+.||.|.||+||-|+      +||+|+|.+-+-      ..+..+.+..|+.||+.+.|        |-    ||.+.-
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrF------p~kqesqlR~EVaILq~l~H--------PG----iV~le~  630 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRF------PTKQESQLRNEVAILQNLHH--------PG----IVNLEC  630 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccC------CCchHHHHHHHHHHHHhcCC--------CC----eeEEEE
Confidence            4789999999999886      599999876532      22334678999999999987        55    999877


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHHHH
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~gL~  284 (447)
                      .                              +++.+.+|.|||-+. | |..++|.      +++...++++.||+.||.
T Consensus       631 M------------------------------~ET~ervFVVMEKl~-G-DMLEMILSsEkgRL~er~TkFlvtQIL~ALr  678 (888)
T KOG4236|consen  631 M------------------------------FETPERVFVVMEKLH-G-DMLEMILSSEKGRLPERITKFLVTQILVALR  678 (888)
T ss_pred             e------------------------------ecCCceEEEEehhhc-c-hHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Confidence            6                              345788999999997 6 7777665      999999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDPELFSG  360 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~pelf~g  360 (447)
                      |||. .+|+|+||||||||+.+...    |             ..+||||||+||++...    ..+....|.+||+...
T Consensus       679 ~LH~-knIvHCDLKPENVLLas~~~----F-------------PQvKlCDFGfARiIgEksFRrsVVGTPAYLaPEVLrn  740 (888)
T KOG4236|consen  679 YLHF-KNIVHCDLKPENVLLASASP----F-------------PQVKLCDFGFARIIGEKSFRRSVVGTPAYLAPEVLRN  740 (888)
T ss_pred             Hhhh-cceeeccCCchheeeccCCC----C-------------CceeeccccceeecchhhhhhhhcCCccccCHHHHhh
Confidence            9999 99999999999999988753    1             17999999999998776    4567778999999998


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc-cCCC--CCccchHHHHHHHHHhcccc-----CHHHH
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK-KTFD--RSSKDERDLRSLKKRLDKYN-----SAKEA  432 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~-~~~~--~~~~~s~~l~dLl~~mL~~d-----sa~el  432 (447)
                      ..+...+|+|+ .|++.+..++|-+||....-   +.+.+.+. -.+|  .++++++++.|||..+|+..     |.++.
T Consensus       741 kGyNrSLDMWS-VGVIiYVsLSGTFPFNEdEd---IndQIQNAaFMyPp~PW~eis~~AidlIn~LLqVkm~kRysvdk~  816 (888)
T KOG4236|consen  741 KGYNRSLDMWS-VGVIIYVSLSGTFPFNEDED---INDQIQNAAFMYPPNPWSEISPEAIDLINNLLQVKMRKRYSVDKS  816 (888)
T ss_pred             cccccccccee-eeEEEEEEecccccCCCccc---hhHHhhccccccCCCchhhcCHHHHHHHHHHHHHHHHHhcchHhh
Confidence            77888889999 99999999999999975422   11222111 1233  35789999999999999998     99999


Q ss_pred             HcCCCCCCC
Q 013230          433 IFDPFFSDL  441 (447)
Q Consensus       433 L~HPff~~~  441 (447)
                      |.|||+++.
T Consensus       817 lsh~Wlq~y  825 (888)
T KOG4236|consen  817 LSHPWLQDY  825 (888)
T ss_pred             ccchhhhcc
Confidence            999999975

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=7.4e-33  Score=277.11  Aligned_cols=240  Identities=17%  Similarity=0.196  Sum_probs=187.1

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.++||+|+||.||+|.+      +|+|++....       .......+.+|+++++.++|        +|    |+
T Consensus         6 ~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------~~----iv   66 (333)
T cd06650           6 DFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEI-------KPAIRNQIIRELQVLHECNS--------PY----IV   66 (333)
T ss_pred             hhheeccccCCCCEEEEEEEECCCCcEEEEEEeeccc-------CHHHHHHHHHHHHHHHHCCC--------Cc----cc
Confidence            469999999999999999974      7888876431       12234568899999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              ++.+|+||||+.+| +|.+++.    +++..++.++.|++.|
T Consensus        67 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~l~~~  115 (333)
T cd06650          67 GFYGAFYS------------------------------DGEISICMEHMDGG-SLDQVLKKAGRIPEQILGKVSIAVIKG  115 (333)
T ss_pred             ceeEEEEE------------------------------CCEEEEEEecCCCC-cHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            99999654                              56799999999988 9999876    8899999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---CEEEEecCCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---DIFFLDLSQDPELFS  359 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---g~i~~~~~~~pelf~  359 (447)
                      |.|||+..+|+||||||+|||++.++                    .+||+|||+++.....   .......|++||.+.
T Consensus       116 l~~lH~~~~ivH~dlkp~Nili~~~~--------------------~~kL~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~  175 (333)
T cd06650         116 LTYLREKHKIMHRDVKPSNILVNSRG--------------------EIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQ  175 (333)
T ss_pred             HHHHHhcCCEEecCCChhhEEEcCCC--------------------CEEEeeCCcchhhhhhccccCCCCccccCHHHhc
Confidence            99999735899999999999999887                    7999999999765332   112334589999998


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHH-------------------------------------------H
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVY-------------------------------------------L  396 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~-------------------------------------------~  396 (447)
                      +.......|+|+ +|++.++++.|..|+........                                           +
T Consensus       176 ~~~~~~~~Dvws-lG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (333)
T cd06650         176 GTHYSVQSDIWS-MGLSLVEMAIGRYPIPPPDAKELELMFGCPVEGDPAESETSPRPRPPGRPLSSYGPDSRPPMAIFEL  254 (333)
T ss_pred             CCCCCcHHHHHH-HHHHHHHHHHCCCCCCCcchhHHHHHhcCcccCCccccccCcccCCccchhhhhcccccccccHHHH
Confidence            877777889999 89999999999888753211110                                           0


Q ss_pred             HHHHhhccCCCC-CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          397 VDMLLLKKTFDR-SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       397 ~~~l~~~~~~~~-~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                      ...+........ ....+.++++||.+||++|     |++|+++||||+....
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~Rpt~~ell~h~~~~~~~~  307 (333)
T cd06650         255 LDYIVNEPPPKLPSGVFGAEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSEA  307 (333)
T ss_pred             HHHHhcCCCccCCCCCcCHHHHHHHHHhccCCcccCcCHHHHhhCHHHhcCcc
Confidence            011110100011 1235789999999999999     9999999999987643

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=1.4e-32  Score=268.01  Aligned_cols=241  Identities=21%  Similarity=0.272  Sum_probs=181.5

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|++      ||+|.+.....      .........+|+.+++.+.++.|     ||    |++
T Consensus         2 y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~------~~~~~~~~~~e~~~l~~l~~~~h-----~n----i~~   66 (288)
T cd07863           2 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTN------EDGLPLSTVREVALLKRLEAFDH-----PN----IVR   66 (288)
T ss_pred             ceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcC------CCCCchHHHHHHHHHHHhhhcCC-----CC----eee
Confidence            58999999999999999973      89998875421      11223456789999988865444     66    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +++++....                         ......++++|||+. | +|..++.      +++..++.++.||+.
T Consensus        67 ~~~~~~~~~-------------------------~~~~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~~~~~~~~~~qi~~  119 (288)
T cd07863          67 LMDVCATSR-------------------------TDRETKVTLVFEHVD-Q-DLRTYLDKVPPPGLPAETIKDLMRQFLR  119 (288)
T ss_pred             eeeeecccc-------------------------CCCCceEEEEEcccc-c-CHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence            999854311                         112355899999997 4 7877764      789999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDPEL  357 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~pel  357 (447)
                      ||+|||+ .||+||||||+|||++.++                    .+||+|||+++.....    .......|++||.
T Consensus       120 al~~lH~-~~ivH~dikp~Nili~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~  178 (288)
T cd07863         120 GLDFLHA-NCIVHRDLKPENILVTSGG--------------------QVKLADFGLARIYSCQMALTPVVVTLWYRAPEV  178 (288)
T ss_pred             HHHHHHh-CCeecCCCCHHHEEECCCC--------------------CEEECccCccccccCcccCCCccccccccCchH
Confidence            9999999 9999999999999999887                    7999999999875432    1223445899999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh----------------ccCCC---------CCccc
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL----------------KKTFD---------RSSKD  412 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~----------------~~~~~---------~~~~~  412 (447)
                      +.+.....+.|||+ +|++.++++.+..|+........+.++...                ...+.         ....+
T Consensus       179 ~~~~~~~~~~Diws-lG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (288)
T cd07863         179 LLQSTYATPVDMWS-VGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVTLPRGAFSPRGPRPVQSVVPEI  257 (288)
T ss_pred             hhCCCCCCcchhhh-HHHHHHHHHhCCcCcCCCCHHHHHHHHHHHhCCCChhhCcccccccccccCCCCCCchHHhCcCc
Confidence            98877777889999 999999999888777543221111111100                00000         01246


Q ss_pred             hHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          413 ERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       413 s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                      +.+++|||.+||++|     |+.|++.||||
T Consensus       258 ~~~~~~li~~~L~~dP~~R~t~~~~l~hp~f  288 (288)
T cd07863         258 EESGAQLLLEMLTFNPHKRISAFRALQHPFF  288 (288)
T ss_pred             CHHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence            788999999999999     99999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=6.9e-33  Score=277.90  Aligned_cols=244  Identities=20%  Similarity=0.240  Sum_probs=183.8

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|.+      ||+|++.....      .......+.+|+.+++.++|        +|    |++
T Consensus        17 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~------~~~~~~~~~~E~~~l~~l~h--------~~----iv~   78 (343)
T cd07878          17 YQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQ------SLIHARRTYRELRLLKHMKH--------EN----VIG   78 (343)
T ss_pred             hhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhh------hhHHHHHHHHHHHHHHhcCC--------Cc----hhh
Confidence            48999999999999999973      99998864321      11233567789999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~  284 (447)
                      +++++...+.                        .......|++|+++ +| +|.+++.   +++..++.++.||+.||+
T Consensus        79 ~~~~~~~~~~------------------------~~~~~~~~~~~~~~-~~-~l~~~~~~~~l~~~~~~~i~~qi~~aL~  132 (343)
T cd07878          79 LLDVFTPATS------------------------IENFNEVYLVTNLM-GA-DLNNIVKCQKLSDEHVQFLIYQLLRGLK  132 (343)
T ss_pred             hhhhhccccc------------------------ccccCcEEEEeecC-CC-CHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            9988643211                        01124589999988 45 8988876   999999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--CEEEEecCCCCCCCCCC-
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--DIFFLDLSQDPELFSGP-  361 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--g~i~~~~~~~pelf~g~-  361 (447)
                      |||+ .||+||||||+|||++.++                    .+||+|||+++.....  +.+....|++||++.+. 
T Consensus       133 ~LH~-~~ivHrdikp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~  191 (343)
T cd07878         133 YIHS-AGIIHRDLKPSNVAVNEDC--------------------ELRILDFGLARQADDEMTGYVATRWYRAPEIMLNWM  191 (343)
T ss_pred             HHHH-CCeecccCChhhEEECCCC--------------------CEEEcCCccceecCCCcCCccccccccCchHhcCCc
Confidence            9999 9999999999999999887                    7999999999876543  22334558999998773 


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh----------------------hc-cCCCC------Cccc
Q 013230          362 KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL----------------------LK-KTFDR------SSKD  412 (447)
Q Consensus       362 ~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~----------------------~~-~~~~~------~~~~  412 (447)
                      ......|||+ +|++.++++.|..|+........+.....                      .. ...+.      ....
T Consensus       192 ~~~~~~Diws-lG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (343)
T cd07878         192 HYNQTVDIWS-VGCIMAELLKGKALFPGNDYIDQLKRIMEVVGTPSPEVLKKISSEHARKYIQSLPHMPQQDLKKIFRGA  270 (343)
T ss_pred             cCCchhhhHh-HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhcchhhHHHHhhccccccchhHHHhccCC
Confidence            4556679999 99999999999888754322111111100                      00 00110      1235


Q ss_pred             hHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          413 ERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       413 s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                      ++.++|||.+||++|     ||.|+|+||||.....
T Consensus       271 ~~~~~~li~~mL~~dp~~R~s~~ell~hp~~~~~~~  306 (343)
T cd07878         271 NPLAIDLLEKMLVLDSDKRISASEALAHPYFSQYHD  306 (343)
T ss_pred             CHHHHHHHHHHcCCChhhCCCHHHHhcCcchhccCC
Confidence            677899999999999     9999999999987654

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=6.7e-33  Score=276.22  Aligned_cols=232  Identities=20%  Similarity=0.216  Sum_probs=180.5

Q ss_pred             EEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHH-HHHhccccccCCCCCCCcccceeeeee
Q 013230          138 VKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVV-LSWTLNHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~-il~~L~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      +.||+|+||.||+|++      +|+|++.....     ........+..|.. +++.++|        +|    |+++++
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~e~~~~l~~~~h--------~~----Iv~~~~   63 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAI-----LKKKEEKHIMSERNVLLKNVKH--------PF----LVGLHF   63 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHH-----HhhhHHHHHHHHHHHHHHhCCC--------CC----CCceeE
Confidence            4699999999999973      99999874321     11112234445544 4667777        77    999998


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHH
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVA  286 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~yl  286 (447)
                      ++..                              .+.+|+||||+.|| +|.+++.    +++..++.++.||+.||+||
T Consensus        64 ~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~qi~~~L~~l  112 (325)
T cd05602          64 SFQT------------------------------ADKLYFVLDYINGG-ELFYHLQRERCFLEPRARFYAAEIASALGYL  112 (325)
T ss_pred             EEEc------------------------------CCeEEEEEeCCCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            8543                              56799999999988 9988875    88999999999999999999


Q ss_pred             HHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCCCCCC
Q 013230          287 EAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPELFSGP  361 (447)
Q Consensus       287 H~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pelf~g~  361 (447)
                      |+ +||+||||||+|||++.++                    .+||+|||+|+.....     .......|++||.+.+.
T Consensus       113 H~-~giiHrDlkp~Nili~~~~--------------------~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~  171 (325)
T cd05602         113 HS-LNIVYRDLKPENILLDSQG--------------------HIVLTDFGLCKENIEHNGTTSTFCGTPEYLAPEVLHKQ  171 (325)
T ss_pred             HH-CCeEecCCCHHHeEECCCC--------------------CEEEccCCCCcccccCCCCcccccCCccccCHHHHcCC
Confidence            99 9999999999999999887                    7999999999754221     11233458999999887


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C----HHHH
Q 013230          362 KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S----AKEA  432 (447)
Q Consensus       362 ~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s----a~el  432 (447)
                      ..+...|+|+ +|++.++++.|..|+...........+..  ........++.++++||++||+.|     +    ..++
T Consensus       172 ~~~~~~Diws-lG~il~el~~g~~pf~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~i  248 (325)
T cd05602         172 PYDRTVDWWC-LGAVLYEMLYGLPPFYSRNTAEMYDNILN--KPLQLKPNITNSARHLLEGLLQKDRTKRLGAKDDFMEI  248 (325)
T ss_pred             CCCCcccccc-ccHHHHHHhcCCCCCCCCCHHHHHHHHHh--CCcCCCCCCCHHHHHHHHHHcccCHHHCCCCCCCHHHH
Confidence            7777789999 99999999999999876544443333332  223334568999999999999999     3    4589


Q ss_pred             HcCCCCCCC
Q 013230          433 IFDPFFSDL  441 (447)
Q Consensus       433 L~HPff~~~  441 (447)
                      ++|+||...
T Consensus       249 ~~~~~~~~~  257 (325)
T cd05602         249 KNHIFFSPI  257 (325)
T ss_pred             hcCcccCCC
Confidence            999999765

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=2.2e-32  Score=267.40  Aligned_cols=237  Identities=20%  Similarity=0.165  Sum_probs=185.2

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+..+.||+|+||.||+|.+      +|+|.+.....     ........+.+|+.+++.++|        +|    |+.
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~-----~~~~~~~~~~~E~~il~~l~~--------~~----i~~   64 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRI-----KKRKGESMALNEKQILEKVNS--------RF----VVS   64 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhc-----cchHHHHHHHHHHHHHHhCCC--------CC----eee
Confidence            57889999999999999873      99998864422     112223456789999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +++.+..                              ++.+|+||||+.|| +|.+++.      +++..+..++.|++.
T Consensus        65 ~~~~~~~------------------------------~~~~~lv~e~~~g~-~L~~~l~~~~~~~l~~~~~~~~~~qi~~  113 (285)
T cd05630          65 LAYAYET------------------------------KDALCLVLTLMNGG-DLKFHIYHMGEAGFEEGRAVFYAAEICC  113 (285)
T ss_pred             eeEEEec------------------------------CCEEEEEEEecCCC-cHHHHHHHhcccCCCHHHHHHHHHHHHH
Confidence            9888533                              56799999999988 9988763      889999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE----EEEecCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI----FFLDLSQDPEL  357 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~----i~~~~~~~pel  357 (447)
                      ||.|||+ .||+||||||+|||++.++                    .++|+|||++........    .....|++||.
T Consensus       114 ~l~~lH~-~~iiH~dikp~Nil~~~~~--------------------~~~l~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~  172 (285)
T cd05630         114 GLEDLHQ-ERIVYRDLKPENILLDDHG--------------------HIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEV  172 (285)
T ss_pred             HHHHHHh-CCEEeCCCCHHHEEECCCC--------------------CEEEeeccceeecCCCccccCCCCCccccChHH
Confidence            9999999 9999999999999999887                    799999999976543321    22345789999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHH---HHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C-
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLW---LVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S-  428 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~---~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s-  428 (447)
                      +.+...+.+.|+|+ +|.+.++++.|..|+.....   ........ .......+...++++++|+++||+.|     | 
T Consensus       173 ~~~~~~~~~~Diws-lG~~l~~l~~g~~Pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~s~  250 (285)
T cd05630         173 VKNERYTFSPDWWA-LGCLLYEMIAGQSPFQQRKKKIKREEVERLV-KEVQEEYSEKFSPDARSLCKMLLCKDPKERLGC  250 (285)
T ss_pred             HcCCCCCCccccHH-HHHHHHHHHhCCCCCCCCCccchHHHHHhhh-hhhhhhcCccCCHHHHHHHHHHhhcCHHHccCC
Confidence            98877777789999 99999999999999864211   11111111 01111123457889999999999999     6 


Q ss_pred             ----HHHHHcCCCCCCC
Q 013230          429 ----AKEAIFDPFFSDL  441 (447)
Q Consensus       429 ----a~elL~HPff~~~  441 (447)
                          |+|+++||||+.+
T Consensus       251 ~~~~~~~~~~h~~~~~~  267 (285)
T cd05630         251 QGGGAREVKEHPLFKQI  267 (285)
T ss_pred             CCCchHHHHcChhhhcc
Confidence                9999999999875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=4.2e-32  Score=264.17  Aligned_cols=232  Identities=17%  Similarity=0.163  Sum_probs=178.9

Q ss_pred             eccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEEE
Q 013230          140 VGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKV  213 (447)
Q Consensus       140 LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~~  213 (447)
                      ||+|+||.||+|+      .+|+|++..+..     ...........|+.++++++|        ||    |+++++++.
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~-----~~~~~~~~~~~E~~il~~l~h--------p~----i~~~~~~~~   63 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRL-----KKKSGEKMALLEKEILEKVNS--------PF----IVNLAYAFE   63 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHh-----hcchhhHHHHHHHHHHHhcCC--------Cc----EEEEEEEEe
Confidence            7999999999986      399998864321     111122345679999999988        88    999988853


Q ss_pred             EeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHHHHHHH
Q 013230          214 CQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAGLAVAE  287 (447)
Q Consensus       214 ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~gL~ylH  287 (447)
                      .                              +..+|+||||+.|| +|..++.      +++..+..++.||+.||+|||
T Consensus        64 ~------------------------------~~~~~lv~e~~~g~-~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH  112 (277)
T cd05607          64 S------------------------------KTHLCLVMSLMNGG-DLKYHIYNVGERGLEMERVIHYSAQITCGILHLH  112 (277)
T ss_pred             c------------------------------CCeEEEEEecCCCC-CHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH
Confidence            2                              56799999999988 9987763      788899999999999999999


Q ss_pred             HhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE----EEEecCCCCCCCCCCCC
Q 013230          288 AAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI----FFLDLSQDPELFSGPKG  363 (447)
Q Consensus       288 ~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~----i~~~~~~~pelf~g~~~  363 (447)
                      + .||+||||||+|||++.++                    .++|+|||++........    .....|++||.+.+...
T Consensus       113 ~-~~ivH~dikp~Nili~~~~--------------------~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  171 (277)
T cd05607         113 S-MDIVYRDMKPENVLLDDQG--------------------NCRLSDLGLAVELKDGKTITQRAGTNGYMAPEILKEEPY  171 (277)
T ss_pred             H-CCEEEccCChHhEEEcCCC--------------------CEEEeeceeeeecCCCceeeccCCCCCccCHHHHccCCC
Confidence            9 9999999999999999887                    799999999987654322    12234889999988777


Q ss_pred             CchHHHHHhhccCCcccccCCCCCChhH----HHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CH----H
Q 013230          364 DKQFDTYRKMKKVTEDQWEGSFPKTNVL----WLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SA----K  430 (447)
Q Consensus       364 ~~~~di~s~lg~~~~~~~~~~~p~~~~~----~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa----~  430 (447)
                      +.+.|+|+ +|++.+++..|..|+....    ........+.....+ ....++++++|||++||++|     +|    +
T Consensus       172 ~~~~Dvws-lGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~  249 (277)
T cd05607         172 SYPVDWFA-MGCSIYEMVAGRTPFKDHKEKVAKEELKRRTLEDEVKF-EHQNFTEESKDICRLFLAKKPEDRLGSREKND  249 (277)
T ss_pred             CCchhHHH-HHHHHHHHHhCCCCCCCCcchhhHHHHHHHhhcccccc-ccccCCHHHHHHHHHHhccCHhhCCCCccchh
Confidence            77789999 9999999999999885421    111111222111111 12457899999999999999     77    7


Q ss_pred             HHHcCCCCCCCC
Q 013230          431 EAIFDPFFSDLI  442 (447)
Q Consensus       431 elL~HPff~~~~  442 (447)
                      ++++||||+.+.
T Consensus       250 ~~~~h~~f~~~~  261 (277)
T cd05607         250 DPRKHEFFKTIN  261 (277)
T ss_pred             hhhcChhhcCCC
Confidence            788999998764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=7.1e-32  Score=259.01  Aligned_cols=238  Identities=21%  Similarity=0.214  Sum_probs=189.8

Q ss_pred             CCcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|++.+.||+|+||.||+|.      .+|+|.+.....   ..........+.+|+.++++++|        ||    |+
T Consensus         3 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~---~~~~~~~~~~~~~e~~~l~~l~~--------~~----i~   67 (263)
T cd06625           3 NWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPD---SPETKKEVNALECEIQLLKNLQH--------ER----IV   67 (263)
T ss_pred             cccccceecCCCceEEEEEEEcCCCcEEEEEEEeeccc---chhhHHHHHHHHHHHHHHHhCCC--------CC----ee
Confidence            46889999999999999996      389998875422   11122234568899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              +..+|+||||+.+| +|.+++.    +++..++.++.|++.|
T Consensus        68 ~~~~~~~~------------------------------~~~~~~v~e~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~~  116 (263)
T cd06625          68 QYYGCLRD------------------------------DETLSIFMEYMPGG-SVKDQLKAYGALTETVTRKYTRQILEG  116 (263)
T ss_pred             eeEEEEcc------------------------------CCeEEEEEEECCCC-cHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99998543                              55799999999987 8988875    7899999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC--------EEEEecCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED--------IFFLDLSQD  354 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g--------~i~~~~~~~  354 (447)
                      |+|||+ .||+||||||+||+++.++                    .++|+|||+++......        ......|++
T Consensus       117 l~~lH~-~~i~H~dl~p~nilv~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~a  175 (263)
T cd06625         117 VEYLHS-NMIVHRDIKGANILRDSAG--------------------NVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMS  175 (263)
T ss_pred             HHHHHh-CCeecCCCCHHHEEEcCCC--------------------CEEEeecccceeccccccccccccCCCcCccccC
Confidence            999999 9999999999999999887                    79999999997643210        112245889


Q ss_pred             CCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CH
Q 013230          355 PELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SA  429 (447)
Q Consensus       355 pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa  429 (447)
                      ||.+.+...+.+.|+|+ +|.+.++++.|..|+.+...................+...+.++.+||++||..+     |+
T Consensus       176 PE~~~~~~~~~~~Di~s-lG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~  254 (263)
T cd06625         176 PEVISGEGYGRKADVWS-VGCTVVEMLTEKPPWAEFEAMAAIFKIATQPTNPQLPSHVSPDARNFLRRTFVENAKKRPSA  254 (263)
T ss_pred             cceeccCCCCchhhhHH-HHHHHHHHHhCCCCccccchHHHHHHHhccCCCCCCCccCCHHHHHHHHHHhhcCcccCCCH
Confidence            99998877777789999 9999999999999987643333333333222333345568899999999999988     99


Q ss_pred             HHHHcCCCC
Q 013230          430 KEAIFDPFF  438 (447)
Q Consensus       430 ~elL~HPff  438 (447)
                      .|+++||||
T Consensus       255 ~~ll~~~~~  263 (263)
T cd06625         255 EELLRHFFV  263 (263)
T ss_pred             HHHhhCCCC
Confidence            999999998

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-32  Score=274.34  Aligned_cols=224  Identities=19%  Similarity=0.216  Sum_probs=185.6

Q ss_pred             cceEEeccccceEEEEec----e-eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeee
Q 013230          135 ENIVKVGEGTFGEAFLAG----N-TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMF  209 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~----~-vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~  209 (447)
                      ...+.||.|+||+||+|.    . ||+|++.....      .....+.+.+|+.+|.+|+|        ||    ||+++
T Consensus        44 ~~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~------~~~~~~~f~~E~~il~~l~H--------pN----IV~f~  105 (362)
T KOG0192|consen   44 PIEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDF------DDESRKAFRREASLLSRLRH--------PN----IVQFY  105 (362)
T ss_pred             hhhhhcccCCceeEEEEEeCCceeEEEEEecchhc------ChHHHHHHHHHHHHHHhCCC--------CC----eeeEE
Confidence            455669999999999986    4 89998875432      11116789999999999999        89    99999


Q ss_pred             eEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHHH
Q 013230          210 EIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAGL  283 (447)
Q Consensus       210 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~gL  283 (447)
                      ++...                             +...++|||||+.+| +|.+++.      ++...+..++.||+.||
T Consensus       106 G~~~~-----------------------------~~~~~~iVtEy~~~G-sL~~~l~~~~~~~l~~~~~l~~aldiArGm  155 (362)
T KOG0192|consen  106 GACTS-----------------------------PPGSLCIVTEYMPGG-SLSVLLHKKRKRKLPLKVRLRIALDIARGM  155 (362)
T ss_pred             EEEcC-----------------------------CCCceEEEEEeCCCC-cHHHHHhhcccCCCCHHHHHHHHHHHHHHH
Confidence            99421                             112699999999999 9999983      99999999999999999


Q ss_pred             HHHHHhCC-eeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCC
Q 013230          284 AVAEAAYE-FEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPEL  357 (447)
Q Consensus       284 ~ylH~~~~-iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pel  357 (447)
                      .|||+ ++ ||||||||+|||++.+..                   .+||+|||+|+......     ...+..|||||+
T Consensus       156 ~YLH~-~~~iIHrDLK~~NiLv~~~~~-------------------~~KI~DFGlsr~~~~~~~~~~~~~GT~~wMAPEv  215 (362)
T KOG0192|consen  156 EYLHS-EGPIIHRDLKSDNILVDLKGK-------------------TLKIADFGLSREKVISKTSMTSVAGTYRWMAPEV  215 (362)
T ss_pred             HHHhc-CCCeeecccChhhEEEcCCCC-------------------EEEECCCccceeeccccccccCCCCCccccChhh
Confidence            99999 99 999999999999999852                   79999999998766421     123355899999


Q ss_pred             CC--CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc
Q 013230          358 FS--GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       358 f~--g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d  427 (447)
                      +.  +..++.+.|+|+ +|++.+++.++..||.+.................+.+....+.+..|+.+|+.-|
T Consensus       216 ~~~~~~~~~~K~DvyS-FgIvlWEl~t~~~Pf~~~~~~~~~~~v~~~~~Rp~~p~~~~~~l~~l~~~CW~~d  286 (362)
T KOG0192|consen  216 LRGEKSPYTEKSDVYS-FGIVLWELLTGEIPFEDLAPVQVASAVVVGGLRPPIPKECPPHLSSLMERCWLVD  286 (362)
T ss_pred             hcCCCCcCCccchhhh-HHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHhCCCC
Confidence            99  557888889999 9999999999999998876655555665555666666778999999999999998

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-33  Score=275.06  Aligned_cols=238  Identities=21%  Similarity=0.166  Sum_probs=195.8

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |..-+.||+|+||.|+-|+.      +|+|.+.+++....     +-....+.|..||++++.        +.    ||.
T Consensus       187 F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr-----~ge~maLnEk~iL~kV~s--------~F----iVs  249 (591)
T KOG0986|consen  187 FRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKR-----KGETMALNEKQILEKVSS--------PF----IVS  249 (591)
T ss_pred             eeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHh-----hhhHHhhHHHHHHHHhcc--------Cc----EEE
Confidence            57779999999999998873      88887766544212     222457899999999987        66    888


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +--+|                              .+++.+++||..|+|| ||.-.|.      |++..+++++.||+.
T Consensus       250 laYAf------------------------------eTkd~LClVLtlMNGG-DLkfHiyn~g~~gF~e~ra~FYAAEi~c  298 (591)
T KOG0986|consen  250 LAYAF------------------------------ETKDALCLVLTLMNGG-DLKFHIYNHGNPGFDEQRARFYAAEIIC  298 (591)
T ss_pred             Eeeee------------------------------cCCCceEEEEEeecCC-ceeEEeeccCCCCCchHHHHHHHHHHHh
Confidence            86663                              4578899999999999 9987765      999999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDPEL  357 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~pel  357 (447)
                      ||.+||+ .+||.|||||+|||+|..|                    +|+|+|.|||..+...    |-+.+.-|||||+
T Consensus       299 GLehlH~-~~iVYRDLKPeNILLDd~G--------------------hvRISDLGLAvei~~g~~~~~rvGT~GYMAPEv  357 (591)
T KOG0986|consen  299 GLEHLHR-RRIVYRDLKPENILLDDHG--------------------HVRISDLGLAVEIPEGKPIRGRVGTVGYMAPEV  357 (591)
T ss_pred             hHHHHHh-cceeeccCChhheeeccCC--------------------CeEeeccceEEecCCCCccccccCcccccCHHH
Confidence            9999999 9999999999999999999                    8999999999987665    3345555899999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChh----HHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc------
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV----LWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN------  427 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~----~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d------  427 (447)
                      .....++...|.|+ +|+..++|..|..||...    .+.+.-...+.....+  +.+.|+++++|.+.+|.+|      
T Consensus       358 l~ne~Y~~s~Dwf~-lGCllYemi~G~sPFr~~KeKvk~eEvdrr~~~~~~ey--~~kFS~eakslc~~LL~Kdp~~RLG  434 (591)
T KOG0986|consen  358 LQNEVYDFSPDWFS-LGCLLYEMIAGHSPFRQRKEKVKREEVDRRTLEDPEEY--SDKFSEEAKSLCEGLLTKDPEKRLG  434 (591)
T ss_pred             HcCCcccCCccHHH-HHhHHHHHHcccCchhhhhhhhhHHHHHHHHhcchhhc--ccccCHHHHHHHHHHHccCHHHhcc
Confidence            99988888889999 999999999999999654    2222222223222334  3789999999999999999      


Q ss_pred             ----CHHHHHcCCCCCCCCC
Q 013230          428 ----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       428 ----sa~elL~HPff~~~~~  443 (447)
                          +|+++.+||||++++.
T Consensus       435 crg~ga~evk~HpfFk~lnw  454 (591)
T KOG0986|consen  435 CRGEGAQEVKEHPFFKDLNW  454 (591)
T ss_pred             CCCcCcchhhhCcccccCCH
Confidence                8999999999999865

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=4.4e-32  Score=265.46  Aligned_cols=238  Identities=21%  Similarity=0.229  Sum_probs=193.0

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||+|+||.||+|++      +|+|++.....     ...+..+.+.+|+.++++++|        ||    |+
T Consensus         2 ~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~e~~~l~~l~h--------~~----i~   64 (290)
T cd05580           2 DFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKI-----VKLKQVEHVLNEKRILQSIRH--------PF----LV   64 (290)
T ss_pred             ceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHh-----hhhhHHHHHHHHHHHHHhCCC--------CC----cc
Confidence            469999999999999999973      89998874321     223345678899999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              .+.+|+||||+.+| +|.+++.    +++..++.++.||+.|
T Consensus        65 ~~~~~~~~------------------------------~~~~~~v~e~~~~~-~L~~~~~~~~~l~~~~~~~~~~qil~~  113 (290)
T cd05580          65 NLYGSFQD------------------------------DSNLYLVMEYVPGG-ELFSHLRKSGRFPEPVARFYAAQVVLA  113 (290)
T ss_pred             ceeeEEEc------------------------------CCeEEEEEecCCCC-CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            99998543                              56799999999987 9998875    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE--EEEecCCCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI--FFLDLSQDPELFSG  360 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~--i~~~~~~~pelf~g  360 (447)
                      |.|||+ .||+||||||.|||++.++                    .+||+|||+++.......  .....|++||.+.+
T Consensus       114 l~~lH~-~~i~H~dl~p~nili~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~  172 (290)
T cd05580         114 LEYLHS-LDIVYRDLKPENLLLDSDG--------------------YIKITDFGFAKRVKGRTYTLCGTPEYLAPEIILS  172 (290)
T ss_pred             HHHHHH-CCEecCCCCHHHEEECCCC--------------------CEEEeeCCCccccCCCCCCCCCCccccChhhhcC
Confidence            999999 9999999999999999987                    799999999987654421  12234789999887


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----------CHH
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----------SAK  430 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----------sa~  430 (447)
                      .......|+|+ +|.+.++++.|..|+.............  ....+.+...+..++++|++||..|          +++
T Consensus       173 ~~~~~~~Di~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~~~~~  249 (290)
T cd05580         173 KGYGKAVDWWA-LGILIYEMLAGYPPFFDDNPIQIYEKIL--EGKVRFPSFFSPDAKDLIRNLLQVDLTKRLGNLKNGVN  249 (290)
T ss_pred             CCCCccccHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHh--cCCccCCccCCHHHHHHHHHHccCCHHHccCcccCCHH
Confidence            66666679999 8999999999999986654433333333  2233444567899999999999998          789


Q ss_pred             HHHcCCCCCCCC
Q 013230          431 EAIFDPFFSDLI  442 (447)
Q Consensus       431 elL~HPff~~~~  442 (447)
                      |+++||||+++.
T Consensus       250 ~l~~~~~~~~~~  261 (290)
T cd05580         250 DIKNHPWFAGID  261 (290)
T ss_pred             HHHcCcccccCC
Confidence            999999998775

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=8.1e-32  Score=262.10  Aligned_cols=238  Identities=17%  Similarity=0.221  Sum_probs=187.6

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|++      +|+|++....       .......+.+|+.++++++|        ||    |+
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------~~----iv   62 (279)
T cd06619           2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDI-------TVELQKQIMSELEILYKCDS--------PY----II   62 (279)
T ss_pred             cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCC-------ChHHHHHHHHHHHHHHhCCC--------CC----ee
Confidence            468999999999999999973      9999887431       12233568899999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhcCCHHHHHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVA  286 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~l~~~~~~~i~~Qil~gL~yl  286 (447)
                      ++++.+..                              ++..++||||+.+| +|..+..+++..+..++.|++.||+||
T Consensus        63 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~l~~~~~~~~~~~~~~~~qi~~~l~~l  111 (279)
T cd06619          63 GFYGAFFV------------------------------ENRISICTEFMDGG-SLDVYRKIPEHVLGRIAVAVVKGLTYL  111 (279)
T ss_pred             eEEEEEEE------------------------------CCEEEEEEecCCCC-ChHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence            99998654                              56689999999987 887776689999999999999999999


Q ss_pred             HHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---CEEEEecCCCCCCCCCCCC
Q 013230          287 EAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---DIFFLDLSQDPELFSGPKG  363 (447)
Q Consensus       287 H~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---g~i~~~~~~~pelf~g~~~  363 (447)
                      |+ .||+|+||||+|||++.++                    .+||+|||++......   .......|++||.+.+...
T Consensus       112 H~-~~i~H~dlkp~Nill~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  170 (279)
T cd06619         112 WS-LKILHRDVKPSNMLVNTRG--------------------QVKLCDFGVSTQLVNSIAKTYVGTNAYMAPERISGEQY  170 (279)
T ss_pred             HH-CCEeeCCCCHHHEEECCCC--------------------CEEEeeCCcceecccccccCCCCChhhcCceeecCCCC
Confidence            99 9999999999999999987                    7999999999765332   2223345889999988777


Q ss_pred             CchHHHHHhhccCCcccccCCCCCChhHH------HHHHHHHHhhc-cCCCCCccchHHHHHHHHHhcccc-----CHHH
Q 013230          364 DKQFDTYRKMKKVTEDQWEGSFPKTNVLW------LVYLVDMLLLK-KTFDRSSKDERDLRSLKKRLDKYN-----SAKE  431 (447)
Q Consensus       364 ~~~~di~s~lg~~~~~~~~~~~p~~~~~~------~~~~~~~l~~~-~~~~~~~~~s~~l~dLl~~mL~~d-----sa~e  431 (447)
                      ..+.|+|+ +|.+.++++.|..|+.....      ........... .........++++++|+.+||+.|     +++|
T Consensus       171 ~~~~Dvws-lG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~e  249 (279)
T cd06619         171 GIHSDVWS-LGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDEDPPVLPVGQFSEKFVHFITQCMRKQPKERPAPEN  249 (279)
T ss_pred             CCcchHHH-HHHHHHHHHhCCCCchhhcccccccchHHHHHHHhccCCCCCCCCcCCHHHHHHHHHHhhCChhhCCCHHH
Confidence            77789999 89999999999988854210      00111111111 111112347889999999999998     9999


Q ss_pred             HHcCCCCCCCC
Q 013230          432 AIFDPFFSDLI  442 (447)
Q Consensus       432 lL~HPff~~~~  442 (447)
                      +++||||+...
T Consensus       250 il~~~~~~~~~  260 (279)
T cd06619         250 LMDHPFIVQYN  260 (279)
T ss_pred             HhcCccccccc
Confidence            99999998763

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=6.2e-32  Score=265.79  Aligned_cols=239  Identities=21%  Similarity=0.301  Sum_probs=184.3

Q ss_pred             cCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          131 YSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       131 y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      ..+|+++++||+|+||.||+|++      ||+|.+.....       ......+.+|+.+++.++|        +|    
T Consensus         5 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~-------~~~~~~~~~E~~~l~~l~h--------~n----   65 (301)
T cd07873           5 LETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHE-------EGAPCTAIREVSLLKDLKH--------AN----   65 (301)
T ss_pred             ccceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccc-------cCchhHHHHHHHHHHhcCC--------CC----
Confidence            34569999999999999999963      99998875421       1223457889999999998        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQV  279 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qi  279 (447)
                      |+++++++..                              ++.+|+||||+. | +|.+++.     +++..++.++.||
T Consensus        66 I~~~~~~~~~------------------------------~~~~~lv~e~~~-~-~l~~~l~~~~~~~~~~~~~~~~~qi  113 (301)
T cd07873          66 IVTLHDIIHT------------------------------EKSLTLVFEYLD-K-DLKQYLDDCGNSINMHNVKLFLFQL  113 (301)
T ss_pred             cceEEEEEec------------------------------CCeEEEEEeccc-c-CHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            9999999543                              567999999997 5 7877764     7899999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQD  354 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~  354 (447)
                      +.||+|||+ .||+||||||+|||++.++                    .+||+|||+++.....     +......|++
T Consensus       114 ~~aL~~lH~-~~i~H~dlkp~Nil~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~  172 (301)
T cd07873         114 LRGLNYCHR-RKVLHRDLKPQNLLINERG--------------------ELKLADFGLARAKSIPTKTYSNEVVTLWYRP  172 (301)
T ss_pred             HHHHHHHHh-CCeeCCCCCHHHEEECCCC--------------------cEEECcCcchhccCCCCCcccccceeecccC
Confidence            999999999 9999999999999999887                    7999999999764322     1233456889


Q ss_pred             CCCCCCCC-CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHH--------------hhc-----cCCCC------
Q 013230          355 PELFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDML--------------LLK-----KTFDR------  408 (447)
Q Consensus       355 pelf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l--------------~~~-----~~~~~------  408 (447)
                      ||.+.+.. ...+.|+|+ +|.+.+++++|..|+.............              ...     ..++.      
T Consensus       173 PE~~~~~~~~~~~~Dv~s-lG~~l~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (301)
T cd07873         173 PDILLGSTDYSTQIDMWG-VGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKSYNYPKYRADCL  251 (301)
T ss_pred             cHHHhCCCCCccHHHHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChhhchhhhccccccccccCccccccH
Confidence            99886643 445679999 8999999999998875432211111100              000     00110      


Q ss_pred             ---CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCC
Q 013230          409 ---SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       409 ---~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~  442 (447)
                         ...++++++|||.+||+.|     |++|+|+||||+.+-
T Consensus       252 ~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~h~~f~~~~  293 (301)
T cd07873         252 HNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMKHPYFHCLG  293 (301)
T ss_pred             HhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhcCccccccc
Confidence               1246889999999999999     999999999998764

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=2.3e-32  Score=277.50  Aligned_cols=242  Identities=20%  Similarity=0.276  Sum_probs=182.8

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+++++||+|+||.||+|++      ||+|++....      ........+.+|+.+++.++|        +|    |+
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------~n----iv   62 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVF------QNLVSCKRVFRELKMLCFFKH--------DN----VL   62 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccc------cchHHHHHHHHHHHHHHhCCC--------CC----cC
Confidence            468999999999999999973      9999875321      112234578899999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++...+.                         .....+|+||||+. + +|.+++.    +++..++.++.||+.|
T Consensus        63 ~~~~~~~~~~~-------------------------~~~~~~~lv~e~~~-~-~l~~~~~~~~~l~~~~~~~~~~qi~~a  115 (372)
T cd07853          63 SALDILQPPHI-------------------------DPFEEIYVVTELMQ-S-DLHKIIVSPQPLSSDHVKVFLYQILRG  115 (372)
T ss_pred             CHhheecCCCc-------------------------cccceEEEEeeccc-c-CHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            99998543110                         01136899999997 4 7777664    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------CEEEEecCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------DIFFLDLSQDPE  356 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g~i~~~~~~~pe  356 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+|+.....      ..+....|++||
T Consensus       116 L~~LH~-~~ivH~dlkp~Nili~~~~--------------------~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE  174 (372)
T cd07853         116 LKYLHS-AGILHRDIKPGNLLVNSNC--------------------VLKICDFGLARVEEPDESKHMTQEVVTQYYRAPE  174 (372)
T ss_pred             HHHHHh-CCeeCCCCChHHEEECCCC--------------------CEEeccccceeecccCccccCCCCCcCCCcCCHH
Confidence            999999 9999999999999999987                    7999999999865432      122334588999


Q ss_pred             CCCCCC-CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHH----------------------HHhhcc-C-------
Q 013230          357 LFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVD----------------------MLLLKK-T-------  405 (447)
Q Consensus       357 lf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~----------------------~l~~~~-~-------  405 (447)
                      ++.+.. .....|+|+ +|++.++++.|..||........+..                      .+.... .       
T Consensus       175 ~~~~~~~~~~~~Diws-lG~il~el~~g~~pf~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (372)
T cd07853         175 ILMGSRHYTSAVDIWS-VGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRSACEGARAHILRGPHKPPSLPVL  253 (372)
T ss_pred             HHcCCCCCCcHHHHHh-HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhHHHHHHHHhCCCCCCchHHh
Confidence            988754 455669999 99999999999888754321111110                      011010 0       


Q ss_pred             CCCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCC
Q 013230          406 FDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       406 ~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~  441 (447)
                      +......++++++||.+||++|     |+.|+|+||||++.
T Consensus       254 ~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~  294 (372)
T cd07853         254 YTLSSQATHEAVHLLCRMLVFDPDKRISAADALAHPYLDEG  294 (372)
T ss_pred             cccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhcCHhhCCC
Confidence            1112345889999999999999     99999999999874

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=3.7e-32  Score=269.16  Aligned_cols=232  Identities=22%  Similarity=0.284  Sum_probs=169.8

Q ss_pred             eEEeccccceEEEEece--------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          137 IVKVGEGTFGEAFLAGN--------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       137 ~~~LG~G~fG~V~~a~~--------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      .++||+|+||.||+|+.        +|+|.+....          ....+.+|+.+++.++|        ||    |+++
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~----------~~~~~~~E~~~l~~l~h--------~n----iv~~   63 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG----------ISMSACREIALLRELKH--------PN----VISL   63 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCC----------CcHHHHHHHHHHHhcCC--------CC----Ccce
Confidence            46899999999999972        8999876331          22456899999999998        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------------CCHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------------LNINEARSL  275 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------------l~~~~~~~i  275 (447)
                      ++++...                            .+..+|++|||+. | +|..++.             +++..++.+
T Consensus        64 ~~~~~~~----------------------------~~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i  113 (317)
T cd07868          64 QKVFLSH----------------------------ADRKVWLLFDYAE-H-DLWHIIKFHRASKANKKPVQLPRGMVKSL  113 (317)
T ss_pred             eeeEecC----------------------------CCcEEEEEEeccC-C-CHHHHHHhcccccccCCcccCCHHHHHHH
Confidence            9986531                            1356899999986 4 7766642             788999999


Q ss_pred             HHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--------CEE
Q 013230          276 LVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--------DIF  347 (447)
Q Consensus       276 ~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--------g~i  347 (447)
                      +.||+.||+|||+ .||+||||||+|||+.....               . ...+||+|||+|+.....        +.+
T Consensus       114 ~~qi~~al~~LH~-~~ivHrDlkp~Nil~~~~~~---------------~-~~~~kl~DfG~a~~~~~~~~~~~~~~~~~  176 (317)
T cd07868         114 LYQILDGIHYLHA-NWVLHRDLKPANILVMGEGP---------------E-RGRVKIADMGFARLFNSPLKPLADLDPVV  176 (317)
T ss_pred             HHHHHHHHHHHHh-CCEEcCCCCHHHEEEecCCC---------------C-cCcEEEeecCceeccCCCCccccccCCcc
Confidence            9999999999999 99999999999999954321               0 016999999999875432        223


Q ss_pred             EEecCCCCCCCCCCC-CCchHHHHHhhccCCcccccCCCCCChhH---------HHHHHHHHHh----------------
Q 013230          348 FLDLSQDPELFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVL---------WLVYLVDMLL----------------  401 (447)
Q Consensus       348 ~~~~~~~pelf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~---------~~~~~~~~l~----------------  401 (447)
                      ....|++||++.+.. .....|+|+ +|++.++++.|..|+....         ....+..++.                
T Consensus       177 ~t~~y~aPE~~~~~~~~~~~~Diws-lG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (317)
T cd07868         177 VTFWYRAPELLLGARHYTKAIDIWA-IGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKM  255 (317)
T ss_pred             ccccccCCHHHcCCCCcCchhhHHH-HHHHHHHHHhCCCCccCCcccccccccccHHHHHHHHHhcCCCChHHhHHHhhc
Confidence            344589999987743 556679999 8999999999987764210         0000000000                


Q ss_pred             ----------hccCCCC----------CccchHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          402 ----------LKKTFDR----------SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       402 ----------~~~~~~~----------~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                                ....+..          ....+.++.|||++||++|     ||+|+|+||||
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07868         256 PEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYF  317 (317)
T ss_pred             cchhhhhhhhhccccCcccccchHHhcCCCCChHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence                      0000000          0123567999999999999     99999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.1e-32  Score=280.93  Aligned_cols=240  Identities=25%  Similarity=0.303  Sum_probs=200.4

Q ss_pred             cCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          131 YSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       131 y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      +..|.+++.||+|.|+.|.+|++      ||||++.+..      ........+.+|+.+|+.|+|        ||    
T Consensus        55 vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~------ln~~~~~k~~rev~imk~l~H--------Pn----  116 (596)
T KOG0586|consen   55 VGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQ------LNPSKRQKLGREVDIMKSLNH--------PN----  116 (596)
T ss_pred             ccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcc------cChHHHHHHHHHHHHHHhcCC--------cc----
Confidence            34569999999999999999984      9999887553      233444568999999999999        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVT  280 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil  280 (447)
                      ||+++.+..                              ++..+|+||||+.+| .+++++.    +.+..++.++.|++
T Consensus       117 Ivkl~~v~~------------------------------t~~~lylV~eya~~g-e~~~yl~~~gr~~e~~ar~~F~q~v  165 (596)
T KOG0586|consen  117 IVKLFSVIE------------------------------TEATLYLVMEYASGG-ELFDYLVKHGRMKEKEARAKFRQIV  165 (596)
T ss_pred             eeeeeeeee------------------------------ecceeEEEEEeccCc-hhHHHHHhcccchhhhhhhhhHHHH
Confidence            999999943                              467899999999998 8888876    77899999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE----EEecCCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF----FLDLSQDPE  356 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i----~~~~~~~pe  356 (447)
                      .|++|||+ .+|||||||.+||||+.+-                    ++||+|||+|.........    ...-|.+||
T Consensus       166 saveYcH~-k~ivHrdLk~eNilL~~~m--------------------nikIaDfgfS~~~~~~~~lqt~cgsppyAaPE  224 (596)
T KOG0586|consen  166 SAVEYCHS-KNIVHRDLKAENILLDENM--------------------NIKIADFGFSTFFDYGLMLQTFCGSPPYAAPE  224 (596)
T ss_pred             HHHHHHhh-cceeccccchhhccccccc--------------------ceeeeccccceeecccccccccCCCCCccChH
Confidence            99999999 9999999999999999996                    7999999999987754221    223388999


Q ss_pred             CCCCCCCCc-hHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          357 LFSGPKGDK-QFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       357 lf~g~~~~~-~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      +|.|..++. +.|+|+ +|++++.+..|.+||............+..  .+..+-.++.++.+||++||..+     +.+
T Consensus       225 l~~g~~y~gpe~D~Ws-lgvvly~LV~GsLPFDG~~lk~Lr~rvl~g--k~rIp~~ms~dce~lLrk~lvl~Pskr~~~d  301 (596)
T KOG0586|consen  225 LFNGKKYDGPEVDIWS-LGVVLYALVEGSLPFDGQNLKELRPRVLRG--KYRIPFYMSCDCEDLLRKFLVLNPSKRGPCD  301 (596)
T ss_pred             hhcCcccCCcceehhh-hhhhheeeeecccccCCcccccccchheee--eecccceeechhHHHHHHhhccCccccCCHH
Confidence            999987664 459999 999999999999999876555554555533  34445668999999999999999     999


Q ss_pred             HHHcCCCCCCCCC
Q 013230          431 EAIFDPFFSDLIV  443 (447)
Q Consensus       431 elL~HPff~~~~~  443 (447)
                      ++..|+|......
T Consensus       302 qim~~~W~n~~~~  314 (596)
T KOG0586|consen  302 QIMKDRWRNDLLE  314 (596)
T ss_pred             Hhhhhcccchhhh
Confidence            9999999986543

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=4.1e-32  Score=271.61  Aligned_cols=230  Identities=19%  Similarity=0.212  Sum_probs=177.0

Q ss_pred             CcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCc
Q 013230          134 PENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNA  201 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~  201 (447)
                      |++.++||+|+||.||+|.           .||+|++....       .......+.+|+.+++.+ +|        || 
T Consensus         9 ~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~~~E~~~l~~l~~h--------~n-   72 (338)
T cd05102           9 LRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGA-------TASEHKALMSELKILIHIGNH--------LN-   72 (338)
T ss_pred             ceeeeEeccCCcceEEEEEEeccCCcccchhhheecccccc-------chHHHHHHHHHHHHHHHhccC--------cc-
Confidence            4899999999999999984           38999876321       122335688999999999 66        77 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------------
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------------  266 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------------  266 (447)
                         ||++++++..                             ..+.+|++|||+.+| +|.+++.               
T Consensus        73 ---iv~~~~~~~~-----------------------------~~~~~~lv~ey~~~g-~L~~~l~~~~~~~~~~~~~~~~  119 (338)
T cd05102          73 ---VVNLLGACTK-----------------------------PNGPLMVIVEFCKYG-NLSNFLRAKREFFSPYREKSPK  119 (338)
T ss_pred             ---eeeEEeEecC-----------------------------CCCceEEEEecCCCC-cHHHHHHhcchhcccccccchh
Confidence               9999998532                             134589999999998 9987763               


Q ss_pred             ---------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHhCCeeec
Q 013230          267 ---------------------------------------------------LNINEARSLLVQVTAGLAVAEAAYEFEHR  295 (447)
Q Consensus       267 ---------------------------------------------------l~~~~~~~i~~Qil~gL~ylH~~~~iiHr  295 (447)
                                                                         +++..+..++.||+.||+|||+ .||+||
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~-~~ivHr  198 (338)
T cd05102         120 QRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDDLWKSPLTMEDLICYSFQVARGMEFLAS-RKCIHR  198 (338)
T ss_pred             hhhhhhhhhhhhccccccccccCCccccccccccCcccccchhccccccCCCCHHHHHHHHHHHHHHHHHHHH-CCEECC
Confidence                                                               4566788899999999999999 999999


Q ss_pred             cCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------CE-EEEecCCCCCCCCCCCCCchHH
Q 013230          296 DLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------DI-FFLDLSQDPELFSGPKGDKQFD  368 (447)
Q Consensus       296 DLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g~-i~~~~~~~pelf~g~~~~~~~d  368 (447)
                      ||||+|||++.++                    .+||+|||+|+.....      +. .....|++||.+.+...+.+.|
T Consensus       199 DiKp~Nil~~~~~--------------------~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sD  258 (338)
T cd05102         199 DLAARNILLSENN--------------------VVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDKVYTTQSD  258 (338)
T ss_pred             CCccceEEEcCCC--------------------cEEEeecccccccccCcchhcccCCCCCccccCcHHhhcCCCCcccC
Confidence            9999999999887                    7999999999864322      11 1113488999988877777889


Q ss_pred             HHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          369 TYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       369 i~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      ||+ +|.+.+++++ +..|+............+........+...++++++|+.+||..|     |+.|+++
T Consensus       259 iws-lG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~el~~  329 (338)
T cd05102         259 VWS-FGVLLWEIFSLGASPYPGVQINEEFCQRLKDGTRMRAPENATPEIYRIMLACWQGDPKERPTFSALVE  329 (338)
T ss_pred             HHH-HHHHHHHHHhCCCCCCCCCCccHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence            999 9999999986 777876533222223333322333345567899999999999999     8988875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=3.5e-32  Score=286.30  Aligned_cols=244  Identities=17%  Similarity=0.158  Sum_probs=192.3

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||.||+|++      ||+|++.....      .......+.+|+.++..++|        +|    +++
T Consensus        34 Y~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~------~~~~~~~~~~Ei~~l~~~~h--------~~----iv~   95 (496)
T PTZ00283         34 YWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGM------SEADKNRAQAEVCCLLNCDF--------FS----IVK   95 (496)
T ss_pred             EEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccC------CHHHHHHHHHHHHHHhcCCC--------Cc----EEE
Confidence            49999999999999999973      99999875432      22334567889999999888        77    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQV  279 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Qi  279 (447)
                      +++.+...+...                      ......+++||||+.+| +|.+++.        +++..++.++.|+
T Consensus        96 ~~~~~~~~~~~~----------------------~~~~~~i~lV~Ey~~~g-sL~~~l~~~~~~~~~l~e~~~~~i~~ql  152 (496)
T PTZ00283         96 CHEDFAKKDPRN----------------------PENVLMIALVLDYANAG-DLRQEIKSRAKTNRTFREHEAGLLFIQV  152 (496)
T ss_pred             eecceecccccC----------------------cccceEEEEEEeCCCCC-cHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence            888765422100                      01112478999999998 9988774        7899999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-------CEEEEecC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-------DIFFLDLS  352 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-------g~i~~~~~  352 (447)
                      +.||.|||+ .||+||||||+|||++.++                    .+||+|||+++.....       .......|
T Consensus       153 l~aL~~lH~-~~IiHrDLKP~NILl~~~~--------------------~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y  211 (496)
T PTZ00283        153 LLAVHHVHS-KHMIHRDIKSANILLCSNG--------------------LVKLGDFGFSKMYAATVSDDVGRTFCGTPYY  211 (496)
T ss_pred             HHHHHHHHh-CCEecCCCCHHHEEEeCCC--------------------CEEEEecccCeeccccccccccccccCCcce
Confidence            999999999 9999999999999999987                    7999999999865321       11223458


Q ss_pred             CCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----
Q 013230          353 QDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----  427 (447)
Q Consensus       353 ~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----  427 (447)
                      ++||++.+...+.+.|||+ +|.+.++++.+..|+........+...+. ....+.+...++++++|+.+||..|     
T Consensus       212 ~aPE~~~~~~~s~k~DVwS-lGvilyeLltG~~Pf~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~li~~~L~~dP~~RP  289 (496)
T PTZ00283        212 VAPEIWRRKPYSKKADMFS-LGVLLYELLTLKRPFDGENMEEVMHKTLA-GRYDPLPPSISPEMQEIVTALLSSDPKRRP  289 (496)
T ss_pred             eCHHHhCCCCCCcHHHHHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHhc-CCCCCCCCCCCHHHHHHHHHHcccChhhCc
Confidence            9999999877888889999 99999999999999876544444443332 2222345668899999999999999     


Q ss_pred             CHHHHHcCCCCCCC
Q 013230          428 SAKEAIFDPFFSDL  441 (447)
Q Consensus       428 sa~elL~HPff~~~  441 (447)
                      |+.++++|||++.+
T Consensus       290 s~~ell~~p~~~~~  303 (496)
T PTZ00283        290 SSSKLLNMPICKLF  303 (496)
T ss_pred             CHHHHHhCHHHHHh
Confidence            99999999998753

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=3.3e-32  Score=260.35  Aligned_cols=234  Identities=25%  Similarity=0.355  Sum_probs=184.1

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|++      +|+|++.....      .........+|+.+++.++|        +|    |++
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~------~~~~~~~~~~e~~~~~~l~~--------~~----i~~   62 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEI------EEEEREENIREIKILRRLRH--------PN----IVQ   62 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTH------HHHHHHHHHHHHHHHHHHTB--------TT----BCH
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccc------cccccchhhhhhhccccccc--------cc----ccc
Confidence            58899999999999999983      99999886532      22222344569999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++..                              +..+++||||+.+| +|.+++.    +++..+..++.||+.||
T Consensus        63 ~~~~~~~------------------------------~~~~~~v~~~~~~~-~L~~~l~~~~~~~~~~~~~~~~qi~~~L  111 (260)
T PF00069_consen   63 ILDVFQD------------------------------DNYLYIVMEYCPGG-SLQDYLQKNKPLSEEEILKIAYQILEAL  111 (260)
T ss_dssp             EEEEEEE------------------------------SSEEEEEEEEETTE-BHHHHHHHHSSBBHHHHHHHHHHHHHHH
T ss_pred             ccccccc------------------------------cccccccccccccc-cccccccccccccccccccccccccccc
Confidence            9999654                              56799999999987 9998876    99999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPELF  358 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pelf  358 (447)
                      ++||+ .||+||||||+|||++.++                    .++|+|||.+......     .......|++||.+
T Consensus       112 ~~Lh~-~~i~H~dikp~NIl~~~~~--------------------~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~  170 (260)
T PF00069_consen  112 AYLHS-KGIVHRDIKPENILLDENG--------------------EVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVL  170 (260)
T ss_dssp             HHHHH-TTEEESSBSGGGEEESTTS--------------------EEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHH
T ss_pred             ccccc-ccccccccccccccccccc--------------------ccccccccccccccccccccccccccccccccccc
Confidence            99999 9999999999999999877                    7999999999753211     11233458899998


Q ss_pred             C-CCCCCchHHHHHhhccCCcccccCCCCCChh---HHHHHHHHHHhhc--cCCCCCccchHHHHHHHHHhcccc-----
Q 013230          359 S-GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV---LWLVYLVDMLLLK--KTFDRSSKDERDLRSLKKRLDKYN-----  427 (447)
Q Consensus       359 ~-g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~---~~~~~~~~~l~~~--~~~~~~~~~s~~l~dLl~~mL~~d-----  427 (447)
                      . +.....+.|+|+ +|.+.++++.+..|+...   .......+.....  ...........++++||++||..|     
T Consensus       171 ~~~~~~~~~~Di~s-lG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~  249 (260)
T PF00069_consen  171 QQGKKYTRKSDIWS-LGIILYELLTGKLPFEESNSDDQLEIIEKILKRPLPSSSQQSREKSEELRDLIKKMLSKDPEQRP  249 (260)
T ss_dssp             TTTSSBSTHHHHHH-HHHHHHHHHHSSSSSTTSSHHHHHHHHHHHHHTHHHHHTTSHTTSHHHHHHHHHHHSSSSGGGST
T ss_pred             cccccccccccccc-cccccccccccccccccccchhhhhhhhhcccccccccccccchhHHHHHHHHHHHccCChhHCc
Confidence            8 666777779999 999999999999888764   2222222222111  111111123589999999999999     


Q ss_pred             CHHHHHcCCCC
Q 013230          428 SAKEAIFDPFF  438 (447)
Q Consensus       428 sa~elL~HPff  438 (447)
                      |+.++++||||
T Consensus       250 ~~~~l~~~~~~  260 (260)
T PF00069_consen  250 SAEELLKHPWF  260 (260)
T ss_dssp             THHHHHTSGGG
T ss_pred             CHHHHhcCCCC
Confidence            99999999998

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=8.9e-32  Score=266.32  Aligned_cols=240  Identities=23%  Similarity=0.233  Sum_probs=193.1

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+..+.||+|+||.||+|.+      +|+|.+.....     ........+..|+.+++.++|        +|    |+
T Consensus         2 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~e~~~l~~l~~--------~~----i~   64 (316)
T cd05574           2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEM-----IKRNKVKRVLTEQEILATLDH--------PF----LP   64 (316)
T ss_pred             ceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEecccc-----chHHHHHHHHHHHHHHHhCCC--------CC----ch
Confidence            468999999999999999973      89998875432     112244678899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVT  280 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil  280 (447)
                      ++++.+..                              .+..|+||||+.|| +|.+++.      +++..++.++.||+
T Consensus        65 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~l~~~~~~~~~~qi~  113 (316)
T cd05574          65 TLYASFQT------------------------------ETYLCLVMDYCPGG-ELFRLLQRQPGKCLSEEVARFYAAEVL  113 (316)
T ss_pred             hheeeeec------------------------------CCEEEEEEEecCCC-CHHHHHHhCCCCccCHHHHHHHHHHHH
Confidence            99988532                              56699999999987 9998874      89999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC---------------
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED---------------  345 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g---------------  345 (447)
                      .||+|||+ .|++||||||+||+++.++                    .++|+|||++.......               
T Consensus       114 ~~l~~lH~-~~i~H~dlkp~Nili~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~  172 (316)
T cd05574         114 LALEYLHL-LGIVYRDLKPENILLHESG--------------------HIMLSDFDLSKQSDVEPPPVSKALRKGSRRSS  172 (316)
T ss_pred             HHHHHHHH-CCeeccCCChHHeEEcCCC--------------------CEEEeecchhhccccccccccccccccccccc
Confidence            99999999 9999999999999999987                    79999999987543221               


Q ss_pred             -------------------EEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCC
Q 013230          346 -------------------IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTF  406 (447)
Q Consensus       346 -------------------~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~  406 (447)
                                         .+....|++||++.+.......|||+ +|.+.++++.|..|+........+.........+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~s-lG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~  251 (316)
T cd05574         173 VNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWT-LGILLYEMLYGTTPFKGSNRDETFSNILKKEVTF  251 (316)
T ss_pred             ccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHH-HHHHHHHHhhCCCCCCCCchHHHHHHHhcCCccC
Confidence                               11223478999888877777779999 9999999999999987655444444444333344


Q ss_pred             CCCccchHHHHHHHHHhcccc-----C----HHHHHcCCCCCCCC
Q 013230          407 DRSSKDERDLRSLKKRLDKYN-----S----AKEAIFDPFFSDLI  442 (447)
Q Consensus       407 ~~~~~~s~~l~dLl~~mL~~d-----s----a~elL~HPff~~~~  442 (447)
                      +.....+.++++||++||..|     |    |+|+|+||||++..
T Consensus       252 ~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~~~~~~~~~  296 (316)
T cd05574         252 PGSPPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQHPFFRGVN  296 (316)
T ss_pred             CCccccCHHHHHHHHHHccCCHhHCCCchhhHHHHHcCchhhcCC
Confidence            443447899999999999999     7    99999999999764

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.98  E-value=5.8e-32  Score=283.70  Aligned_cols=233  Identities=18%  Similarity=0.195  Sum_probs=189.1

Q ss_pred             CcceEEeccccceEEEEece-------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          134 PENIVKVGEGTFGEAFLAGN-------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~-------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      |.+.+.||+|+||.||+|..       ||+|.+...        .......+.+|+.+++.++|        ||    ||
T Consensus        69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~--------~~~~~~~~~~E~~~l~~l~H--------pn----iv  128 (478)
T PTZ00267         69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLN--------DERQAAYARSELHCLAACDH--------FG----IV  128 (478)
T ss_pred             EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccC--------CHHHHHHHHHHHHHHHhCCC--------CC----Ee
Confidence            59999999999999999962       777765432        12233567789999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQ  278 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Q  278 (447)
                      ++++++..                              ++.+||||||+.|| +|.+++.        +++..++.++.|
T Consensus       129 ~~~~~~~~------------------------------~~~~~lv~E~~~gg-~L~~~l~~~~~~~~~l~~~~~~~i~~q  177 (478)
T PTZ00267        129 KHFDDFKS------------------------------DDKLLLIMEYGSGG-DLNKQIKQRLKEHLPFQEYEVGLLFYQ  177 (478)
T ss_pred             EEEEEEEE------------------------------CCEEEEEEECCCCC-CHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence            99999654                              56799999999988 9987653        789999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-------EEEEec
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-------IFFLDL  351 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-------~i~~~~  351 (447)
                      |+.||.|||+ .||+||||||+|||++.++                    .+||+|||+|+......       ......
T Consensus       178 i~~aL~~lH~-~~ivHrDlkp~NIll~~~~--------------------~~kL~DFgla~~~~~~~~~~~~~~~~gt~~  236 (478)
T PTZ00267        178 IVLALDEVHS-RKMMHRDLKSANIFLMPTG--------------------IIKLGDFGFSKQYSDSVSLDVASSFCGTPY  236 (478)
T ss_pred             HHHHHHHHHh-CCEEECCcCHHhEEECCCC--------------------cEEEEeCcCceecCCccccccccccCCCcc
Confidence            9999999999 9999999999999999887                    79999999998754321       113344


Q ss_pred             CCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----
Q 013230          352 SQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       352 ~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      |++||.+.+.....+.|+|+ +|++.++++.|..|+........+...+.. ...+.+..+++++++||.+||..|    
T Consensus       237 y~aPE~~~~~~~~~~~Dv~s-lG~~l~el~tg~~Pf~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~li~~~L~~dP~~R  314 (478)
T PTZ00267        237 YLAPELWERKRYSKKADMWS-LGVILYELLTLHRPFKGPSQREIMQQVLYG-KYDPFPCPVSSGMKALLDPLLSKNPALR  314 (478)
T ss_pred             ccCHhHhCCCCCCcHHhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHhC-CCCCCCccCCHHHHHHHHHHhccChhhC
Confidence            89999998877777889999 999999999999998765444444444332 222334568899999999999999    


Q ss_pred             -CHHHHHcCCCCCC
Q 013230          428 -SAKEAIFDPFFSD  440 (447)
Q Consensus       428 -sa~elL~HPff~~  440 (447)
                       |+++++.|||++.
T Consensus       315 ps~~~~l~~~~~~~  328 (478)
T PTZ00267        315 PTTQQLLHTEFLKY  328 (478)
T ss_pred             cCHHHHHhCHHHHH
Confidence             9999999999864

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.98  E-value=4.1e-32  Score=297.67  Aligned_cols=258  Identities=21%  Similarity=0.225  Sum_probs=191.4

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+++++||+|+||.||+|++      +|+|++....      ........+..|+.+++.|+|        ||    ||
T Consensus        14 ~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~------l~e~~~~~~~~EI~IL~~L~H--------PN----IV   75 (1021)
T PTZ00266         14 EYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRG------LKEREKSQLVIEVNVMRELKH--------KN----IV   75 (1021)
T ss_pred             CEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccc------cCHHHHHHHHHHHHHHHHcCC--------CC----cC
Confidence            459999999999999999984      8899887542      222344678999999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQ  278 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Q  278 (447)
                      +++++|...+                            ...+||||||+.+| +|.+++.        +++..++.|+.|
T Consensus        76 rl~d~f~de~----------------------------~~~lyIVMEY~~gG-SL~~lL~k~~~~~g~L~E~~Il~Ia~Q  126 (1021)
T PTZ00266         76 RYIDRFLNKA----------------------------NQKLYILMEFCDAG-DLSRNIQKCYKMFGKIEEHAIVDITRQ  126 (1021)
T ss_pred             eEEEEEEecC----------------------------CCEEEEEEeCCCCC-cHHHHHHHHhhccCCCCHHHHHHHHHH
Confidence            9999876422                            35699999999988 9988764        899999999999


Q ss_pred             HHHHHHHHHHhCC-------eeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEE
Q 013230          279 VTAGLAVAEAAYE-------FEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIF  347 (447)
Q Consensus       279 il~gL~ylH~~~~-------iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i  347 (447)
                      |+.||+|||+ .+       ||||||||+||||+...........  ....... ...+||+|||+++.....    .++
T Consensus       127 IL~ALaYLHs-~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~--~~~n~ng-~~iVKLsDFGlAr~l~~~s~~~s~v  202 (1021)
T PTZ00266        127 LLHALAYCHN-LKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITA--QANNLNG-RPIAKIGDFGLSKNIGIESMAHSCV  202 (1021)
T ss_pred             HHHHHHHHHh-cccccccCCceeccCcHHHeEeecCccccccccc--cccccCC-CCceEEccCCccccccccccccccC
Confidence            9999999998 54       9999999999999764311000000  0000111 125899999999875432    233


Q ss_pred             EEecCCCCCCCCCC--CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcc
Q 013230          348 FLDLSQDPELFSGP--KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDK  425 (447)
Q Consensus       348 ~~~~~~~pelf~g~--~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~  425 (447)
                      ....|++||++.+.  ....+.|||+ +|++.++++++..||........+...+.....++. ...+.++.+||.+||.
T Consensus       203 GTp~YmAPEvL~ge~~~~s~KSDVWS-LG~ILYELLTGk~PF~~~~~~~qli~~lk~~p~lpi-~~~S~eL~dLI~~~L~  280 (1021)
T PTZ00266        203 GTPYYWSPELLLHETKSYDDKSDMWA-LGCIIYELCSGKTPFHKANNFSQLISELKRGPDLPI-KGKSKELNILIKNLLN  280 (1021)
T ss_pred             CCccccCHHHHhccCCCCCchhHHHH-HHHHHHHHHHCCCCCCcCCcHHHHHHHHhcCCCCCc-CCCCHHHHHHHHHHhc
Confidence            44568999988543  3456779999 999999999999998654322223333322222322 3468899999999999


Q ss_pred             cc-----CHHHHHcCCCCCCCCC
Q 013230          426 YN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       426 ~d-----sa~elL~HPff~~~~~  443 (447)
                      .+     |+.|+|.||||+.+..
T Consensus       281 ~dPeeRPSa~QlL~h~~ik~i~~  303 (1021)
T PTZ00266        281 LSAKERPSALQCLGYQIIKNVGP  303 (1021)
T ss_pred             CChhHCcCHHHHhccHHHhhcCC
Confidence            99     9999999999986643

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.98  E-value=3.2e-33  Score=262.78  Aligned_cols=234  Identities=18%  Similarity=0.199  Sum_probs=191.7

Q ss_pred             EEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeE
Q 013230          138 VKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEI  211 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~  211 (447)
                      ++||-|-.|.|..|.+      +|+|++.-         .    ..+.+|+++..+...           ||+||.++|+
T Consensus        68 qvLG~GinGkV~~C~~k~T~ekfALKvL~D---------s----~KARrEVeLHw~~s~-----------h~~iV~IidV  123 (400)
T KOG0604|consen   68 QVLGAGINGKVVQCVHKRTQEKFALKVLLD---------S----PKARREVELHWMASG-----------HPHIVSIIDV  123 (400)
T ss_pred             hhhccccCCceEEEEeccchhhhHHHHHhc---------C----HHHHhHhhhhhhhcC-----------CCceEEeehh
Confidence            7899999999999863      89998762         2    345889998777643           5669999999


Q ss_pred             EEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHHHHH
Q 013230          212 KVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAGLAV  285 (447)
Q Consensus       212 ~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~gL~y  285 (447)
                      |.-                          .+....++.||||+++|| .|+.-+.      |++.++..|++||..|++|
T Consensus       124 yeN--------------------------s~~~rkcLLiVmE~meGG-eLfsriq~~g~~afTErea~eI~~qI~~Av~~  176 (400)
T KOG0604|consen  124 YEN--------------------------SYQGRKCLLIVMECMEGG-ELFSRIQDRGDQAFTEREASEIMKQIGLAVRY  176 (400)
T ss_pred             hhh--------------------------hccCceeeEeeeecccch-HHHHHHHHcccccchHHHHHHHHHHHHHHHHH
Confidence            632                          133357799999999999 7777765      9999999999999999999


Q ss_pred             HHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE----EEEecCCCCCCCCCC
Q 013230          286 AEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI----FFLDLSQDPELFSGP  361 (447)
Q Consensus       286 lH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~----i~~~~~~~pelf~g~  361 (447)
                      ||+ .+|.||||||||+|...+..                 +..+||+|||+|+.....+.    .+..+|.+||+....
T Consensus       177 lH~-~nIAHRDlKpENLLyt~t~~-----------------na~lKLtDfGFAK~t~~~~~L~TPc~TPyYvaPevlg~e  238 (400)
T KOG0604|consen  177 LHS-MNIAHRDLKPENLLYTTTSP-----------------NAPLKLTDFGFAKETQEPGDLMTPCFTPYYVAPEVLGPE  238 (400)
T ss_pred             HHh-cchhhccCChhheeeecCCC-----------------CcceEecccccccccCCCccccCCcccccccCHHHhCch
Confidence            999 99999999999999998763                 23799999999998875532    366778999999888


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCChh----HHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc-----CHH
Q 013230          362 KGDKQFDTYRKMKKVTEDQWEGSFPKTNV----LWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       362 ~~~~~~di~s~lg~~~~~~~~~~~p~~~~----~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      +++...|+|+ +|++.+-++-|+.||+..    ..+....++..+.-.||.  ++.+|.+++|+|++||+.+     |+.
T Consensus       239 KydkscdmwS-lgVimYIlLCGyPPFYS~hg~aispgMk~rI~~gqy~FP~pEWs~VSe~aKdlIR~LLkt~PteRlTI~  317 (400)
T KOG0604|consen  239 KYDKSCDMWS-LGVIMYILLCGYPPFYSNHGLAISPGMKRRIRTGQYEFPEPEWSCVSEAAKDLIRKLLKTEPTERLTIE  317 (400)
T ss_pred             hcCCCCCccc-hhHHHHHhhcCCCcccccCCccCChhHHhHhhccCccCCChhHhHHHHHHHHHHHHHhcCCchhheeHH
Confidence            8777789999 999999999999999754    223334455555556765  4678999999999999999     999


Q ss_pred             HHHcCCCCCCC
Q 013230          431 EAIFDPFFSDL  441 (447)
Q Consensus       431 elL~HPff~~~  441 (447)
                      +++.|||....
T Consensus       318 ~~m~hpwi~~~  328 (400)
T KOG0604|consen  318 EVMDHPWINQY  328 (400)
T ss_pred             HhhcCchhccc
Confidence            99999999854

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.98  E-value=1.8e-31  Score=273.08  Aligned_cols=231  Identities=16%  Similarity=0.153  Sum_probs=178.8

Q ss_pred             CCcceEEeccccceEEEEec--------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          133 DPENIVKVGEGTFGEAFLAG--------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~--------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      .|+++++||+|+||.||+|.        .||+|.+...             ....+|+.+++.|+|        +|    
T Consensus        93 ~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-------------~~~~~E~~il~~l~h--------~~----  147 (392)
T PHA03207         93 QYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-------------KTPGREIDILKTISH--------RA----  147 (392)
T ss_pred             ceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc-------------ccHHHHHHHHHhcCC--------CC----
Confidence            35999999999999999985        2777766422             124689999999998        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVT  280 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil  280 (447)
                      ||+++++|..                              .+..|+|||++. | +|.+++.    +++..++.++.||+
T Consensus       148 iv~~~~~~~~------------------------------~~~~~lv~e~~~-~-~l~~~l~~~~~l~~~~~~~i~~ql~  195 (392)
T PHA03207        148 IINLIHAYRW------------------------------KSTVCMVMPKYK-C-DLFTYVDRSGPLPLEQAITIQRRLL  195 (392)
T ss_pred             ccceeeeEee------------------------------CCEEEEEehhcC-C-CHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            9999988643                              466999999996 4 7877765    89999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-------CEEEEecCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-------DIFFLDLSQ  353 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-------g~i~~~~~~  353 (447)
                      .||.|||+ .||+||||||+|||++.++                    .+||+|||+|+.....       +......|+
T Consensus       196 ~aL~~LH~-~givHrDlkp~Nill~~~~--------------------~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~  254 (392)
T PHA03207        196 EALAYLHG-RGIIHRDVKTENIFLDEPE--------------------NAVLGDFGAACKLDAHPDTPQCYGWSGTLETN  254 (392)
T ss_pred             HHHHHHHH-CCccccCCCHHHEEEcCCC--------------------CEEEccCccccccCcccccccccccccccCcc
Confidence            99999999 9999999999999999887                    7999999999765432       122344588


Q ss_pred             CCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHH---HHHHHHHHh---------------------------hc
Q 013230          354 DPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLW---LVYLVDMLL---------------------------LK  403 (447)
Q Consensus       354 ~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~---~~~~~~~l~---------------------------~~  403 (447)
                      +||++.+.....+.|+|+ +|++.++++.|..|+.....   ...+..++.                           ..
T Consensus       255 aPE~~~~~~~~~~~Dvws-lGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (392)
T PHA03207        255 SPELLALDPYCAKTDIWS-AGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHFKQYAIVLR  333 (392)
T ss_pred             CHhHhcCCCCCchhhHHH-HHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccCCccchhHHHHHHhhccccc
Confidence            999999877778889999 99999999999888753210   001111000                           00


Q ss_pred             cCCCC-----CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCC
Q 013230          404 KTFDR-----SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       404 ~~~~~-----~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~  442 (447)
                      ..+..     ....+.++++||++||++|     ||.|+|+||||....
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~~p~f~~~~  382 (392)
T PHA03207        334 PPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDILSLPLFTKEP  382 (392)
T ss_pred             CCccccchhhccCcchhHHHHHHHHhccChhhCCCHHHHhhCchhhccc
Confidence            00111     1234678999999999999     999999999998653

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.98  E-value=8.5e-33  Score=280.43  Aligned_cols=240  Identities=18%  Similarity=0.190  Sum_probs=189.2

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |..++.||-|+||+|.+++.      +|+|.++++..+     ......++..|-.||...+.        +=    ||+
T Consensus       631 Fvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl-----~rnQvaHVKAERDILAEADn--------~W----VVr  693 (1034)
T KOG0608|consen  631 FVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVL-----MRNQVAHVKAERDILAEADN--------EW----VVR  693 (1034)
T ss_pred             eEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHH-----hhhhhhhhhhhhhhHhhcCC--------cc----eEE
Confidence            68899999999999999984      899988876543     22344678889999998876        44    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      ||-.|                              .+++.+|+||+|+.|| |+-.++-    |.++.+|+++.++..|+
T Consensus       694 LyySF------------------------------QDkdnLYFVMdYIPGG-DmMSLLIrmgIFeE~LARFYIAEltcAi  742 (1034)
T KOG0608|consen  694 LYYSF------------------------------QDKDNLYFVMDYIPGG-DMMSLLIRMGIFEEDLARFYIAELTCAI  742 (1034)
T ss_pred             EEEEe------------------------------ccCCceEEEEeccCCc-cHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            98773                              4578899999999999 8887654    99999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeec---CCC----------------
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRIN---TGE----------------  344 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~---~~~----------------  344 (447)
                      ++.|. .|+|||||||+|||||.+|                    +|||+||||+.-.   .+.                
T Consensus       743 esVHk-mGFIHRDiKPDNILIDrdG--------------------HIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep  801 (1034)
T KOG0608|consen  743 ESVHK-MGFIHRDIKPDNILIDRDG--------------------HIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEP  801 (1034)
T ss_pred             HHHHh-ccceecccCccceEEccCC--------------------ceeeeeccccccceeccccccccCCCccccccCCC
Confidence            99999 9999999999999999999                    9999999998421   111                


Q ss_pred             ----------------------------CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHH--
Q 013230          345 ----------------------------DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLV--  394 (447)
Q Consensus       345 ----------------------------g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~--  394 (447)
                                                  ..+...-|++||++....+...+|.|+ .|+++++|+-|..||....-..  
T Consensus       802 ~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws-~gvil~em~~g~~pf~~~tp~~tq  880 (1034)
T KOG0608|consen  802 SPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWS-VGVILYEMLVGQPPFLADTPGETQ  880 (1034)
T ss_pred             chhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhH-hhHHHHHHhhCCCCccCCCCCcce
Confidence                                        123445589999998765555569999 9999999999998885431111  


Q ss_pred             HHHHHHhhccCCCCCccchHHHHHHHHHhcccc-------CHHHHHcCCCCCCCCC
Q 013230          395 YLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-------SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       395 ~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-------sa~elL~HPff~~~~~  443 (447)
                      +....+...-.++...++|+++.|||.+|+.--       .++|+..||||+.+..
T Consensus       881 ~kv~nw~~~l~~~~~~~ls~e~~~li~kLc~sad~RLGkng~d~vKaHpfFkgIDf  936 (1034)
T KOG0608|consen  881 YKVINWRNFLHIPYQGNLSKEALDLIQKLCCSADSRLGKNGADQVKAHPFFKGIDF  936 (1034)
T ss_pred             eeeeehhhccccccccccCHHHHHHHHHHhcChhhhhcccchhhhhcCccccccch
Confidence            111111112356667789999999999986644       7888999999998753

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.98  E-value=1.8e-31  Score=260.79  Aligned_cols=238  Identities=19%  Similarity=0.159  Sum_probs=186.3

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+..+.||+|+||+||+|.+      +|+|.+.....     ........+.+|+.+++.++|        +|    |+.
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~E~~il~~l~~--------~~----i~~   64 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRI-----KKRKGESMALNEKQILEKVNS--------QF----VVN   64 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhh-----hhhhHHHHHHHHHHHHHHcCC--------cC----cee
Confidence            57789999999999999873      99998864421     112233457889999999988        78    899


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +.+.+..                              ++..|++|||+.+| +|..++.      +++..+..++.|++.
T Consensus        65 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~ql~~  113 (285)
T cd05632          65 LAYAYET------------------------------KDALCLVLTIMNGG-DLKFHIYNMGNPGFEEERALFYAAEILC  113 (285)
T ss_pred             EEEEEec------------------------------CCEEEEEEEeccCc-cHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            8888543                              56799999999987 8887763      889999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDPEL  357 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~pel  357 (447)
                      ||.|||+ .||+||||||+|||++.++                    .+||+|||+++.....    +......|++||.
T Consensus       114 ~l~~lH~-~~iiH~dikp~Nili~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~g~~~~~aPE~  172 (285)
T cd05632         114 GLEDLHR-ENTVYRDLKPENILLDDYG--------------------HIRISDLGLAVKIPEGESIRGRVGTVGYMAPEV  172 (285)
T ss_pred             HHHHHHh-CCeeecCCCHHHEEECCCC--------------------CEEEecCCcceecCCCCcccCCCCCcCccChHH
Confidence            9999999 9999999999999999886                    7999999999765322    1223345889999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHH---HHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C-
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWL---VYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S-  428 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~---~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s-  428 (447)
                      ..+.......|+|+ +|.+.+++++|..|+......   ......+. ......+...+.++.+|+.+||+.|     | 
T Consensus       173 ~~~~~~~~~~Di~s-lG~~l~~l~~g~~P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~  250 (285)
T cd05632         173 LNNQRYTLSPDYWG-LGCLIYEMIEGQSPFRGRKEKVKREEVDRRVL-ETEEVYSAKFSEEAKSICKMLLTKDPKQRLGC  250 (285)
T ss_pred             hcCCCCCcccchHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhh-ccccccCccCCHHHHHHHHHHccCCHhHcCCC
Confidence            98877777779999 899999999999998653211   11111111 1122233567889999999999999     5 


Q ss_pred             ----HHHHHcCCCCCCCC
Q 013230          429 ----AKEAIFDPFFSDLI  442 (447)
Q Consensus       429 ----a~elL~HPff~~~~  442 (447)
                          ++++++||||++..
T Consensus       251 ~~~~~~~l~~~~~~~~~~  268 (285)
T cd05632         251 QEEGAGEVKRHPFFRNMN  268 (285)
T ss_pred             cccChHHHHcChhhhcCC
Confidence                89999999998863

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.98  E-value=1.4e-32  Score=260.30  Aligned_cols=249  Identities=19%  Similarity=0.212  Sum_probs=188.4

Q ss_pred             cchhhhhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCC
Q 013230          122 TKLLDLFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNE  195 (447)
Q Consensus       122 ~~~~~~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~  195 (447)
                      .+|.+.++-     ..+.||+|+||.|--|.+      +|+|+|.+.        .-....++.+|++++...+.     
T Consensus        73 g~F~d~YkL-----t~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq--------~gHsR~RvfREVe~f~~Cqg-----  134 (463)
T KOG0607|consen   73 GKFEDMYKL-----TSELLGEGAYASVQTCVSIQTGKEYAVKIIDKQ--------PGHSRSRVFREVETFYQCQG-----  134 (463)
T ss_pred             chHHHHHHh-----HHHHhcCccceeeeeeeeeccchhhhhhhhhcC--------CchHHHHHHHHHHHHHHhcC-----
Confidence            445555443     247899999999998874      999998743        11245678999999998865     


Q ss_pred             CCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHH
Q 013230          196 GDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINE  271 (447)
Q Consensus       196 ~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~  271 (447)
                            |+||++++++|                              .++..+|+|||-+.|| .|...|.    |++.+
T Consensus       135 ------h~nilqLiefF------------------------------Edd~~FYLVfEKm~GG-plLshI~~~~~F~E~E  177 (463)
T KOG0607|consen  135 ------HKNILQLIEFF------------------------------EDDTRFYLVFEKMRGG-PLLSHIQKRKHFNERE  177 (463)
T ss_pred             ------CccHHHHHHHh------------------------------cccceEEEEEecccCc-hHHHHHHHhhhccHHH
Confidence                  44599999994                              4478899999999999 6666555    99999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------
Q 013230          272 ARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------  345 (447)
Q Consensus       272 ~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------  345 (447)
                      +..++++|+.||.|||. .||.||||||||||......                 -.-||||||.|...+...+      
T Consensus       178 As~vvkdia~aLdFlH~-kgIAHRDlKPENiLC~~pn~-----------------vsPvKiCDfDLgSg~k~~~~~spas  239 (463)
T KOG0607|consen  178 ASRVVKDIASALDFLHT-KGIAHRDLKPENILCESPNK-----------------VSPVKICDFDLGSGIKLNNDCSPAS  239 (463)
T ss_pred             HHHHHHHHHHHHHHHhh-cCcccccCCccceeecCCCC-----------------cCceeeeccccccccccCCCCCCCC
Confidence            99999999999999999 99999999999999987652                 1258999999875543321      


Q ss_pred             ------EEEEecCCCCCCC-----CCCCCCchHHHHHhhccCCcccccCCCCCChh-----HHH---------HHHH-HH
Q 013230          346 ------IFFLDLSQDPELF-----SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV-----LWL---------VYLV-DM  399 (447)
Q Consensus       346 ------~i~~~~~~~pelf-----~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~-----~~~---------~~~~-~~  399 (447)
                            -+...-||+||+.     ....++...|+|+ +|++.|.|+.|+.||...     -|.         ..+. .+
T Consensus       240 tP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwS-LGvIlYImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~LFesI  318 (463)
T KOG0607|consen  240 TPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWS-LGVILYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNKLFESI  318 (463)
T ss_pred             CccccCcccchhhcchhHHhhhccccccccccccHHH-HHHHHHHHHhCCCCccCccCCcCCccCCCccHHHHHHHHHHH
Confidence                  1222337899865     3345666679999 999999999999998542     121         1122 22


Q ss_pred             HhhccCCCC--CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          400 LLLKKTFDR--SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       400 l~~~~~~~~--~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                      --++-.||.  +..+|.+++||++.||..|     +|.++++|||++....+
T Consensus       319 QEGkYeFPdkdWahIS~eakdlisnLlvrda~~rlsa~~vlnhPw~~~~~~e  370 (463)
T KOG0607|consen  319 QEGKYEFPDKDWAHISSEAKDLISNLLVRDAKQRLSAAQVLNHPWVQRCAPE  370 (463)
T ss_pred             hccCCcCChhhhHHhhHHHHHHHHHHHhccHHhhhhhhhccCCccccccchh
Confidence            222334554  4468999999999999999     99999999999976543

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.98  E-value=2.1e-31  Score=263.35  Aligned_cols=239  Identities=17%  Similarity=0.198  Sum_probs=185.4

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.++||+|+||.||+|++      +|+|.+....       .......+.+|+.+++.++|        ||    |+
T Consensus         2 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------~~----iv   62 (308)
T cd06615           2 DFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEI-------KPAIRNQIIRELKVLHECNS--------PY----IV   62 (308)
T ss_pred             CceEEeeccCCCCeEEEEEEEcCCCeEEEEEEecccc-------CHHHHHHHHHHHHHHHhCCC--------CC----CC
Confidence            469999999999999999973      7888776431       22234568899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              ++.+|+||||+.+| +|.+++.    +++..++.++.||+.|
T Consensus        63 ~~~~~~~~------------------------------~~~~~lv~ey~~~~-~L~~~l~~~~~~~~~~~~~~~~~i~~~  111 (308)
T cd06615          63 GFYGAFYS------------------------------DGEISICMEHMDGG-SLDQVLKKAGRIPENILGKISIAVLRG  111 (308)
T ss_pred             eEEEEEee------------------------------CCEEEEEeeccCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            99998643                              56799999999988 9999986    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---CEEEEecCCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---DIFFLDLSQDPELFS  359 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---g~i~~~~~~~pelf~  359 (447)
                      |.|||+.++++||||||+|||++.++                    .+||+|||+++.....   ..+....|++||.+.
T Consensus       112 l~~lH~~~~i~H~dl~p~nil~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~aPE~~~  171 (308)
T cd06615         112 LTYLREKHKIMHRDVKPSNILVNSRG--------------------EIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQ  171 (308)
T ss_pred             HHHHHhhCCEEECCCChHHEEEecCC--------------------cEEEccCCCcccccccccccCCCCcCccChhHhc
Confidence            99999746999999999999999887                    7999999998765432   112234578999988


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHH------------------------------------hhc
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDML------------------------------------LLK  403 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l------------------------------------~~~  403 (447)
                      +.....+.|+|+ +|.+.++++.+..|+....... ....+                                    ...
T Consensus       172 ~~~~~~~~Diws-lG~~l~~l~~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (308)
T cd06615         172 GTHYTVQSDIWS-LGLSLVEMAIGRYPIPPPDAKE-LEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIVNE  249 (308)
T ss_pred             CCCCCccchHHH-HHHHHHHHHhCCCCCCCcchhh-HHHhhcCccccccccCCcccccCCCCCccchhhHHHHHHHHhcC
Confidence            876667779999 8999999999988874321111 00000                                    000


Q ss_pred             --cCCCCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          404 --KTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       404 --~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                        ...+ ...++.++++|+.+||..|     |++|+++||||.....+
T Consensus       250 ~~~~~~-~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~~  296 (308)
T cd06615         250 PPPKLP-SGAFSDEFQDFVDKCLKKNPKERADLKELTKHPFIKRAELE  296 (308)
T ss_pred             CCccCc-CcccCHHHHHHHHHHccCChhhCcCHHHHhcChhhhhcccc
Confidence              0011 1136788999999999999     99999999999876443

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.97  E-value=3.7e-31  Score=255.57  Aligned_cols=237  Identities=20%  Similarity=0.253  Sum_probs=180.3

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCccccee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~iv  206 (447)
                      |+..+.||+|+||.||+|+.      +|+|++....         .....+..|+.+++++ +|        +|    |+
T Consensus         8 y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~---------~~~~~~~~e~~~l~~~~~h--------~~----i~   66 (272)
T cd06637           8 FELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG---------DEEEEIKQEINMLKKYSHH--------RN----IA   66 (272)
T ss_pred             hhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCC---------ccHHHHHHHHHHHHHhcCC--------CC----ee
Confidence            48889999999999999973      8999886432         1235678999999988 45        77    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVT  280 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil  280 (447)
                      ++++++...+.                        ...+..+|++|||+.+| +|.+++.      +++..++.++.|++
T Consensus        67 ~~~~~~~~~~~------------------------~~~~~~~~iv~e~~~~~-~L~~~l~~~~~~~l~~~~~~~~~~qi~  121 (272)
T cd06637          67 TYYGAFIKKNP------------------------PGMDDQLWLVMEFCGAG-SVTDLIKNTKGNTLKEEWIAYICREIL  121 (272)
T ss_pred             eEeeEEeecCC------------------------CCCCcEEEEEEEcCCCC-cHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence            99998654221                        01134689999999987 8888765      78999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDP  355 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~p  355 (447)
                      .||+|||+ ++|+||||||+||+++.++                    .+||+|||+++.....     .......|++|
T Consensus       122 ~~l~~LH~-~~ivh~dl~~~nili~~~~--------------------~~~l~Dfg~~~~~~~~~~~~~~~~g~~~y~aP  180 (272)
T cd06637         122 RGLSHLHQ-HKVIHRDIKGQNVLLTENA--------------------EVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAP  180 (272)
T ss_pred             HHHHHHHH-CCCccCCCCHHHEEECCCC--------------------CEEEccCCCceecccccccCCcccccccccCH
Confidence            99999999 9999999999999999887                    7999999999864322     11233458899


Q ss_pred             CCCCCC-----CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc---
Q 013230          356 ELFSGP-----KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN---  427 (447)
Q Consensus       356 elf~g~-----~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d---  427 (447)
                      |++.+.     ......|+|+ +|++.+++++|..|+.........................+.++++|+.+||..|   
T Consensus       181 E~~~~~~~~~~~~~~~~Dv~s-lGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  259 (272)
T cd06637         181 EVIACDENPDATYDFKSDLWS-LGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQ  259 (272)
T ss_pred             hHhccccCcCCCCCchhhHHH-HHHHHHHHHhCCCCccccCHHHHHHHHhcCCCCCCCCCCcCHHHHHHHHHHcCCChhh
Confidence            988532     3445679999 8999999999998886433222222111111111123457889999999999998   


Q ss_pred             --CHHHHHcCCCC
Q 013230          428 --SAKEAIFDPFF  438 (447)
Q Consensus       428 --sa~elL~HPff  438 (447)
                        |+.+++.||||
T Consensus       260 Rpt~~~il~~~~~  272 (272)
T cd06637         260 RPTTEQLMKHPFI  272 (272)
T ss_pred             CCCHHHHhhCCCC
Confidence              99999999998

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=9.5e-33  Score=281.68  Aligned_cols=241  Identities=20%  Similarity=0.244  Sum_probs=201.9

Q ss_pred             cceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      +...+||+|+|-+||+|.+      ||+-.+++...    .......+++..|+++|+.|+|        +|    ||++
T Consensus        43 k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~----~q~~~~leR~~~Ev~lLKsL~H--------~N----Iirf  106 (632)
T KOG0584|consen   43 KFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDV----TQSPEELERLYSEVHLLKSLKH--------PN----IIRF  106 (632)
T ss_pred             ehhhhcccccceeeeeccccccchhhHHHHHhHHHh----hcChHHHHHHHHHHHHHccCCC--------Cc----eeee
Confidence            3347899999999999985      77766665432    1233445889999999999999        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~  284 (447)
                      |+.|+..                            .+..+.+|.|++..| +|..|.+    ++...++.+.+||+.||.
T Consensus       107 y~SW~d~----------------------------~n~~in~iTEL~TSG-tLr~Y~kk~~~vn~kaik~W~RQILkGL~  157 (632)
T KOG0584|consen  107 YDSWVDT----------------------------DNKTINFITELFTSG-TLREYRKKHRRVNIKAIKSWCRQILKGLV  157 (632)
T ss_pred             eeheecC----------------------------CCceeeeeeecccCC-cHHHHHHHhccCCHHHHHHHHHHHHHHhh
Confidence            9997641                            135688999999999 9999987    899999999999999999


Q ss_pred             HHHH-hCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---CEEEEecCCCCCCCCC
Q 013230          285 VAEA-AYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---DIFFLDLSQDPELFSG  360 (447)
Q Consensus       285 ylH~-~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---g~i~~~~~~~pelf~g  360 (447)
                      |||+ ...|||||||-+||+|..+..                   .|||+|+|||+.....   .||.+.-|||||+|..
T Consensus       158 yLHs~~PPIIHRDLKCDNIFinG~~G-------------------~VKIGDLGLAtl~r~s~aksvIGTPEFMAPEmYEE  218 (632)
T KOG0584|consen  158 YLHSQDPPIIHRDLKCDNIFVNGNLG-------------------EVKIGDLGLATLLRKSHAKSVIGTPEFMAPEMYEE  218 (632)
T ss_pred             hhhcCCCCccccccccceEEEcCCcC-------------------ceeecchhHHHHhhccccceeccCccccChHHHhh
Confidence            9995 358999999999999998863                   8999999999876543   5788888999999984


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCC-ccchHHHHHHHHHhcccc----CHHHHHcC
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRS-SKDERDLRSLKKRLDKYN----SAKEAIFD  435 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~-~~~s~~l~dLl~~mL~~d----sa~elL~H  435 (447)
                       .++...|||+ +|.+..+|.++.+|+........++++++........ +--++++++||.+||..-    ||.|||+|
T Consensus       219 -~YnE~VDVYa-FGMCmLEMvT~eYPYsEC~n~AQIYKKV~SGiKP~sl~kV~dPevr~fIekCl~~~~~R~sa~eLL~d  296 (632)
T KOG0584|consen  219 -NYNELVDVYA-FGMCMLEMVTSEYPYSECTNPAQIYKKVTSGIKPAALSKVKDPEVREFIEKCLATKSERLSAKELLKD  296 (632)
T ss_pred             -hcchhhhhhh-hhHHHHHHHhccCChhhhCCHHHHHHHHHcCCCHHHhhccCCHHHHHHHHHHhcCchhccCHHHHhhC
Confidence             7888889999 9999999999999999887777788887655443332 334799999999999887    99999999


Q ss_pred             CCCCCC
Q 013230          436 PFFSDL  441 (447)
Q Consensus       436 Pff~~~  441 (447)
                      |||+.-
T Consensus       297 ~Ff~~d  302 (632)
T KOG0584|consen  297 PFFDED  302 (632)
T ss_pred             hhhccc
Confidence            999864

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.97  E-value=4e-31  Score=254.09  Aligned_cols=235  Identities=18%  Similarity=0.173  Sum_probs=188.7

Q ss_pred             eccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEEE
Q 013230          140 VGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKV  213 (447)
Q Consensus       140 LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~~  213 (447)
                      ||.|+||.||+|++      +|+|++.....     ......+.+.+|+.+++.++|        +|    |+++++.+.
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-----~~~~~~~~~~~e~~~l~~l~h--------~~----i~~~~~~~~   63 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHI-----VETGQQEHIFSEKEILEECNH--------PF----IVKLYRTFK   63 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcc-----hhhhHHHHHHHHHHHHHhCCC--------CC----EeeeeeeEE
Confidence            79999999999984      99998875432     222344678999999999988        88    999999853


Q ss_pred             EeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHHHHh
Q 013230          214 CQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVAEAA  289 (447)
Q Consensus       214 ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~ylH~~  289 (447)
                      .                              ++.+|++|||+.+| +|.+++.    +++..++.++.||+.||+|||+ 
T Consensus        64 ~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lH~-  111 (262)
T cd05572          64 D------------------------------KKYIYMLMEYCLGG-ELWTILRDRGLFDEYTARFYIACVVLAFEYLHN-  111 (262)
T ss_pred             c------------------------------CCccEEEEecCCCC-cHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhh-
Confidence            2                              56799999999987 9998875    7999999999999999999999 


Q ss_pred             CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCCCCCCCCCCc
Q 013230          290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPELFSGPKGDK  365 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pelf~g~~~~~  365 (447)
                      .|++|+||||+||+++.++                    .++|+|||+++......    ......|++||.+.+...+.
T Consensus       112 ~~~~h~dl~~~nilv~~~~--------------------~~~l~df~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~  171 (262)
T cd05572         112 RGIIYRDLKPENLLLDSNG--------------------YVKLVDFGFAKKLKSGQKTWTFCGTPEYVAPEIILNKGYDF  171 (262)
T ss_pred             CCcccCCCCHHHEEEcCCC--------------------CEEEeeCCcccccCcccccccccCCcCccChhHhcCCCCCC
Confidence            9999999999999999987                    79999999998765431    11234588999988766677


Q ss_pred             hHHHHHhhccCCcccccCCCCCChhH--HHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C-----HHHHH
Q 013230          366 QFDTYRKMKKVTEDQWEGSFPKTNVL--WLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S-----AKEAI  433 (447)
Q Consensus       366 ~~di~s~lg~~~~~~~~~~~p~~~~~--~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s-----a~elL  433 (447)
                      +.|+|+ +|.+.++++.|..|+....  -......+.........+...++++++||++||..|     |     ++|++
T Consensus       172 ~~Di~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~~l~  250 (262)
T cd05572         172 SVDYWS-LGILLYELLTGRPPFGEDDEDPMEIYNDILKGNGKLEFPNYIDKAAKDLIKQLLRRNPEERLGNLKGGIKDIK  250 (262)
T ss_pred             hhhhhh-hHHHHHHHHhCCCCcCCCCCCHHHHHHHHhccCCCCCCCcccCHHHHHHHHHHccCChhhCcCCcccCHHHHh
Confidence            779999 8999999999999986554  233333333223344444556899999999999999     6     99999


Q ss_pred             cCCCCCCCCCC
Q 013230          434 FDPFFSDLIVD  444 (447)
Q Consensus       434 ~HPff~~~~~~  444 (447)
                      +||||+++..+
T Consensus       251 ~~~~~~~~~~~  261 (262)
T cd05572         251 KHKWFNGFDWE  261 (262)
T ss_pred             cChhhhCCCCC
Confidence            99999987543

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.97  E-value=2.7e-31  Score=264.74  Aligned_cols=235  Identities=15%  Similarity=0.161  Sum_probs=178.7

Q ss_pred             ceEEeccc--cceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          136 NIVKVGEG--TFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       136 ~~~~LG~G--~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      ++++||+|  +||+||+|+.      ||+|++.....      .....+.+.+|+.+++.++|        ||    |++
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~------~~~~~~~~~~e~~~l~~l~h--------pn----iv~   63 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEAC------TNEMVTFLQGELHVSKLFNH--------PN----IVP   63 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhc------cHHHHHHHHHHHHHHHhcCC--------CC----eee
Confidence            56789999  7899999973      99999875421      22234567789999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +++++..                              ++.+|+||||+.+| +|.+++.      +++..++.++.||+.
T Consensus        64 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~l~~~~~~~~~~~l~~~~~~~i~~qi~~  112 (327)
T cd08227          64 YRATFIA------------------------------DNELWVVTSFMAYG-SAKDLICTHFMDGMSELAIAYILQGVLK  112 (327)
T ss_pred             EEEEEEE------------------------------CCEEEEEEeccCCC-cHHHHHHhhccCCCCHHHHHHHHHHHHH
Confidence            9998654                              56799999999988 9988874      789999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE------------EEE
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI------------FFL  349 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~------------i~~  349 (447)
                      ||+|||+ .||+||||||+|||++.++                    .++++|||.+......+.            ...
T Consensus       113 ~L~~LH~-~~iiH~dlkp~Nil~~~~~--------------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (327)
T cd08227         113 ALDYIHH-MGYVHRSVKASHILISVDG--------------------KVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKV  171 (327)
T ss_pred             HHHHHHH-CCEecCCCChhhEEEecCC--------------------cEEEcccchhhccccccccccccccccccccce
Confidence            9999999 9999999999999999887                    789999986543322110            112


Q ss_pred             ecCCCCCCCCCC--CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhcc-----------------------
Q 013230          350 DLSQDPELFSGP--KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKK-----------------------  404 (447)
Q Consensus       350 ~~~~~pelf~g~--~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~-----------------------  404 (447)
                      ..|++||.+.+.  ..+.+.|+|+ +|++.+++++|..|+.................                       
T Consensus       172 ~~y~aPE~~~~~~~~~~~~~Diws-lG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (327)
T cd08227         172 LPWLSPEVLQQNLQGYDAKSDIYS-VGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTTTIPAEELTMKPSRSGA  250 (327)
T ss_pred             ecccChHHhhcccCCCCchhhHHH-HHHHHHHHHHCCCCCCCcchhHHHHHHhcCCccccccccchhhhhcccCCcccCC
Confidence            237899998763  3556779999 89999999999999865322111111110000                       


Q ss_pred             ---------------------CCCCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCC
Q 013230          405 ---------------------TFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       405 ---------------------~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~  441 (447)
                                           ..+.....++++++||++||++|     ||+|+++||||+.+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~~p~f~~~  313 (327)
T cd08227         251 NSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQI  313 (327)
T ss_pred             cCCCCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhcChhhhhc
Confidence                                 00011235789999999999999     99999999999875

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=1.1e-32  Score=298.60  Aligned_cols=236  Identities=22%  Similarity=0.270  Sum_probs=196.8

Q ss_pred             cceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      +....||.|.||.||-|.+      .|+|.+++...      ..+....+.+|..++..++|        ||    +|++
T Consensus      1238 qrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~------~~k~~~~i~eEm~vlE~lnH--------pN----lV~Y 1299 (1509)
T KOG4645|consen 1238 QRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDS------DHKTFKLIAEEMKVLEGLNH--------PN----LVRY 1299 (1509)
T ss_pred             ccccccCCcceeeeEEeecCCccchhhhhhhhcCcc------ccccCcchHHHHHHHHhccC--------cc----cccc
Confidence            6668899999999999985      89998876543      25566788999999999999        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~  284 (447)
                      |++-+.                              .+.+||.||||.|| +|.+++.    .++...+.+..|++.|++
T Consensus      1300 yGVEvH------------------------------Rekv~IFMEyC~~G-sLa~ll~~gri~dE~vt~vyt~qll~gla 1348 (1509)
T KOG4645|consen 1300 YGVEVH------------------------------REKVYIFMEYCEGG-SLASLLEHGRIEDEMVTRVYTKQLLEGLA 1348 (1509)
T ss_pred             Cceeec------------------------------HHHHHHHHHHhccC-cHHHHHHhcchhhhhHHHHHHHHHHHHHH
Confidence            999544                              56699999999999 9999987    788899999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---------CEEEEecCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---------DIFFLDLSQDP  355 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---------g~i~~~~~~~p  355 (447)
                      |||+ +|||||||||+|||++.++                    .+|++|||.|+....+         +.+.+.|||||
T Consensus      1349 ~LH~-~gIVHRDIK~aNI~Ld~~g--------------------~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAP 1407 (1509)
T KOG4645|consen 1349 YLHE-HGIVHRDIKPANILLDFNG--------------------LIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAP 1407 (1509)
T ss_pred             HHHh-cCceecCCCccceeeecCC--------------------cEEeecccceeEecCchhcCCHHHHhhcCCchhcCc
Confidence            9999 9999999999999999998                    7999999999886554         45778899999


Q ss_pred             CCCCCCCCCc---hHHHHHhhccCCcccccCCCCCChh--HHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc---
Q 013230          356 ELFSGPKGDK---QFDTYRKMKKVTEDQWEGSFPKTNV--LWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN---  427 (447)
Q Consensus       356 elf~g~~~~~---~~di~s~lg~~~~~~~~~~~p~~~~--~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d---  427 (447)
                      |+|.|.....   ..|||+ +|++..+|.+|..|+.+.  .|. .++..-. ....+.|..+|++.+|||.+||+.|   
T Consensus      1408 Evit~t~~kG~~~A~DiWs-lGCVVlEM~tGkrPW~~~dne~a-IMy~V~~-gh~Pq~P~~ls~~g~dFle~Cl~~dP~~ 1484 (1509)
T KOG4645|consen 1408 EVITGTKGKGHGGAADIWS-LGCVVLEMATGKRPWAELDNEWA-IMYHVAA-GHKPQIPERLSSEGRDFLEHCLEQDPKM 1484 (1509)
T ss_pred             hhhcccccCCCCcchhhhc-ccceEEEeecCCCchhhccchhH-HHhHHhc-cCCCCCchhhhHhHHHHHHHHHhcCchh
Confidence            9998876433   339999 999999999999998764  232 2222222 2234445679999999999999999   


Q ss_pred             --CHHHHHcCCCCCCCCC
Q 013230          428 --SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       428 --sa~elL~HPff~~~~~  443 (447)
                        +|.|+|.|-|=+.-..
T Consensus      1485 Rw~~~qlle~~f~~~~~d 1502 (1509)
T KOG4645|consen 1485 RWTASQLLEHAFGKSCTD 1502 (1509)
T ss_pred             hhHHHHHHHhhccccccc
Confidence              9999999999765433

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.97  E-value=7e-31  Score=257.03  Aligned_cols=240  Identities=22%  Similarity=0.296  Sum_probs=187.4

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|+++++||+|+||.||+|++      +|+|.+...        .....+.+.+|+.+++.++|        +|    |+
T Consensus        13 ~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~--------~~~~~~~~~~e~~~l~~l~h--------~~----i~   72 (292)
T cd06644          13 VWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETK--------SEEELEDYMVEIEILATCNH--------PY----IV   72 (292)
T ss_pred             hhhhhheecCCCCeEEEEEEECCCCceEEEEEeccC--------CHHHHHHHHHHHHHHHhCCC--------Cc----Ee
Confidence            359999999999999999973      888887643        12234667889999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      ++++.+..                              ++.+|+||||+.+| +|..++.     +++..++.++.|++.
T Consensus        73 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~l~~~~~~~~~~l~~~~~~~~~~ql~~  121 (292)
T cd06644          73 KLLGAFYW------------------------------DGKLWIMIEFCPGG-AVDAIMLELDRGLTEPQIQVICRQMLE  121 (292)
T ss_pred             eeEEEEEe------------------------------CCeEEEEEecCCCC-cHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence            99998654                              45699999999987 8887653     899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pe  356 (447)
                      ||+|||+ .||+||||||+||+++.++                    .+||+|||+++.....     .......|++||
T Consensus       122 ~l~~lH~-~~i~H~dlkp~Nili~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE  180 (292)
T cd06644         122 ALQYLHS-MKIIHRDLKAGNVLLTLDG--------------------DIKLADFGVSAKNVKTLQRRDSFIGTPYWMAPE  180 (292)
T ss_pred             HHHHHhc-CCeeecCCCcceEEEcCCC--------------------CEEEccCccceeccccccccceecCCccccCce
Confidence            9999999 9999999999999998876                    7999999998764332     112223478999


Q ss_pred             CCCC-----CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc-cCCCCCccchHHHHHHHHHhcccc---
Q 013230          357 LFSG-----PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK-KTFDRSSKDERDLRSLKKRLDKYN---  427 (447)
Q Consensus       357 lf~g-----~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~-~~~~~~~~~s~~l~dLl~~mL~~d---  427 (447)
                      ++.+     ...+.+.|+|+ +|++.+++..+..|+................ .....+..++.++.+||++||..|   
T Consensus       181 ~~~~~~~~~~~~~~~~Dv~s-lG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  259 (292)
T cd06644         181 VVMCETMKDTPYDYKADIWS-LGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLSQPSKWSMEFRDFLKTALDKHPET  259 (292)
T ss_pred             eeccccccCCCCCchhhhHh-HHHHHHHHhcCCCCCccccHHHHHHHHhcCCCccCCCCcccCHHHHHHHHHHhcCCccc
Confidence            8743     22345679999 8999999999998886543333222222111 122334567889999999999998   


Q ss_pred             --CHHHHHcCCCCCCCCCCC
Q 013230          428 --SAKEAIFDPFFSDLIVDR  445 (447)
Q Consensus       428 --sa~elL~HPff~~~~~~~  445 (447)
                        +++|+++||||..+....
T Consensus       260 Rp~~~~il~~~~~~~~~~~~  279 (292)
T cd06644         260 RPSAAQLLEHPFVSSVTSNR  279 (292)
T ss_pred             CcCHHHHhcCccccccccch
Confidence              999999999999876554

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=2.4e-31  Score=276.88  Aligned_cols=228  Identities=18%  Similarity=0.206  Sum_probs=173.9

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|.+.+.||+|+||.||+|.+      ||+|....              ....+|+.++++|+|        +|    ||
T Consensus       170 gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~--------------~~~~~E~~iL~~L~H--------pn----Iv  223 (461)
T PHA03211        170 GFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWY--------------ASSVHEARLLRRLSH--------PA----VL  223 (461)
T ss_pred             CeEEEEEEccCCCeEEEEEEECCCCCEEEEecccc--------------cCHHHHHHHHHHCCC--------CC----CC
Confidence            469999999999999999984      78885321              224789999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      ++++++..                              .+..|+|||++. | +|..++.     +++..++.++.||+.
T Consensus       224 ~l~~~~~~------------------------------~~~~~lv~e~~~-~-~L~~~l~~~~~~l~~~~~~~i~~qi~~  271 (461)
T PHA03211        224 ALLDVRVV------------------------------GGLTCLVLPKYR-S-DLYTYLGARLRPLGLAQVTAVARQLLS  271 (461)
T ss_pred             cEEEEEEE------------------------------CCEEEEEEEccC-C-CHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            99998654                              456899999996 5 7777764     899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-------CEEEEecCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-------DIFFLDLSQD  354 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-------g~i~~~~~~~  354 (447)
                      ||.|||+ .||+||||||+|||++.++                    .+||+|||+|+.....       +......|++
T Consensus       272 aL~yLH~-~gIvHrDLKP~NILl~~~~--------------------~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~A  330 (461)
T PHA03211        272 AIDYIHG-EGIIHRDIKTENVLVNGPE--------------------DICLGDFGAACFARGSWSTPFHYGIAGTVDTNA  330 (461)
T ss_pred             HHHHHHH-CCEEECcCCHHHEEECCCC--------------------CEEEcccCCceecccccccccccccCCCcCCcC
Confidence            9999999 9999999999999999887                    7999999999865332       1223345899


Q ss_pred             CCCCCCCCCCchHHHHHhhccCCcccccCCCCCChh-------HHHHHHHHHHhhc----cCC-----------------
Q 013230          355 PELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV-------LWLVYLVDMLLLK----KTF-----------------  406 (447)
Q Consensus       355 pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~-------~~~~~~~~~l~~~----~~~-----------------  406 (447)
                      ||++.+...+.+.|||+ +|++.++++.+..|+...       .+...+.+++...    ..+                 
T Consensus       331 PE~~~~~~~~~~sDvwS-lGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~  409 (461)
T PHA03211        331 PEVLAGDPYTPSVDIWS-AGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAGSRLVSQYRHRAA  409 (461)
T ss_pred             HHHHcCCCCCchHHHHH-HHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCCcchHHHHHHHhhhh
Confidence            99999887788889999 899998887654322110       0001111111000    000                 


Q ss_pred             ------------CCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCC
Q 013230          407 ------------DRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSD  440 (447)
Q Consensus       407 ------------~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~  440 (447)
                                  ......+.++++||.+||++|     ||.|+|+||||++
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~hp~f~~  460 (461)
T PHA03211        410 RNRRPAYTRPAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLRLPLFQS  460 (461)
T ss_pred             cccCCccCCcchhhhccccchHHHHHHHHcccChhhCcCHHHHhhCcccCC
Confidence                        001135678999999999999     9999999999975

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=4.4e-34  Score=262.94  Aligned_cols=254  Identities=22%  Similarity=0.345  Sum_probs=191.3

Q ss_pred             cchhhhhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCC
Q 013230          122 TKLLDLFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNE  195 (447)
Q Consensus       122 ~~~~~~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~  195 (447)
                      .++.+..+.|   +.+.+||+|+||+||+|+.      ||+|++-.+.      +.+.+....++|+.+|..|+|     
T Consensus        10 ~P~~~~~~~y---ek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmen------eKeGfpitalreikiL~~lkH-----   75 (376)
T KOG0669|consen   10 EPFCDEVSKY---EKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMEN------EKEGFPITALREIKILQLLKH-----   75 (376)
T ss_pred             CCceecchHH---HHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhc------cccCCcHHHHHHHHHHHHhcc-----
Confidence            3444455555   8899999999999999973      7888665432      456677889999999999999     


Q ss_pred             CCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHH
Q 013230          196 GDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNIN  270 (447)
Q Consensus       196 ~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~  270 (447)
                         +|    ++.+++++-.  +         .           .|-.-....+|+||.+|+  .||.-++.     |+..
T Consensus        76 ---en----v~nliEic~t--k---------~-----------Tp~~r~r~t~ylVf~~ce--hDLaGlLsn~~vr~sls  124 (376)
T KOG0669|consen   76 ---EN----VVNLIEICRT--K---------A-----------TPTNRDRATFYLVFDFCE--HDLAGLLSNRKVRFSLS  124 (376)
T ss_pred             ---hh----HHHHHHHHhh--c---------c-----------CCcccccceeeeeHHHhh--hhHHHHhcCccccccHH
Confidence               77    6665554211  0         0           000112356999999998  78888765     9999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------
Q 013230          271 EARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------  344 (447)
Q Consensus       271 ~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------  344 (447)
                      +++.++++++.||.|+|+ ..|+|||+||+|+||+.++                    .+||+|||+||.....      
T Consensus       125 ~Ikk~Mk~Lm~GL~~iHr-~kilHRDmKaaNvLIt~dg--------------------ilklADFGlar~fs~~~n~~kp  183 (376)
T KOG0669|consen  125 EIKKVMKGLMNGLYYIHR-NKILHRDMKAANVLITKDG--------------------ILKLADFGLARAFSTSKNVVKP  183 (376)
T ss_pred             HHHHHHHHHHHHHHHHHH-hhHHhhcccHhhEEEcCCc--------------------eEEeeccccccceecccccCCC
Confidence            999999999999999999 9999999999999999998                    7999999999764322      


Q ss_pred             --------------------------------CEEEEecCCCCCCCCCCCCCchH-HHHHhhccCCcccccCC--CCCCh
Q 013230          345 --------------------------------DIFFLDLSQDPELFSGPKGDKQF-DTYRKMKKVTEDQWEGS--FPKTN  389 (447)
Q Consensus       345 --------------------------------g~i~~~~~~~pelf~g~~~~~~~-di~s~lg~~~~~~~~~~--~p~~~  389 (447)
                                                      ||++.+|+++.++|+|..+..++ -|-.++|.++.+.|++.  .|.+.
T Consensus       184 rytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs~tkevWP~~d~lpL~~  263 (376)
T KOG0669|consen  184 RYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGSITKEVWPNVDNLPLYQ  263 (376)
T ss_pred             CcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhccCCcccCCCcccchHHH
Confidence                                            89999999999999998887787 56678999999999886  33322


Q ss_pred             hHHHH----HHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          390 VLWLV----YLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       390 ~~~~~----~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                      ..-..    -...++.  .... +-.-++++.||+.+||.+|     +|+++|.|.||..-+.+
T Consensus       264 sie~ePl~~~~~rkv~--n~~k-p~~kd~~a~dLle~ll~~DP~kR~~ad~alnh~~F~kdp~p  324 (376)
T KOG0669|consen  264 SIELEPLPKGQKRKVK--NRLK-PYVKDDEALDLLEKLLKLDPTKRIDADQALNHDFFWKDPMP  324 (376)
T ss_pred             hccCCCCCcchhhhhh--hhcc-cccCChhHHHHHHHHhccCcccCcchHhhhchhhhhcCCcc
Confidence            11000    0001110  0000 1123779999999999999     99999999999876655

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.97  E-value=5.7e-31  Score=259.62  Aligned_cols=240  Identities=20%  Similarity=0.206  Sum_probs=188.9

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|.+      ||+|.+.....     ........+.+|+.+++.++|        ||    |+
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~-----~~~~~~~~~~~e~~~l~~~~~--------~~----i~   64 (305)
T cd05609           2 DFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNL-----ILRNQIQQVFVERDILTFAEN--------PF----VV   64 (305)
T ss_pred             CceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhh-----hhHHHHHHHHHHHHHHHhCCC--------CC----ee
Confidence            569999999999999999973      99998764421     122334577899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++.+..                              ++.+|+||||+.|| +|.+++.    +++..++.++.|++.|
T Consensus        65 ~~~~~~~~------------------------------~~~~~lv~e~~~g~-~L~~~l~~~~~~~~~~~~~~~~~i~~~  113 (305)
T cd05609          65 SMFCSFET------------------------------KRHLCMVMEYVEGG-DCATLLKNIGALPVDMARMYFAETVLA  113 (305)
T ss_pred             eeEEEEec------------------------------CCEEEEEEecCCCC-cHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            99988543                              56689999999987 9999886    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------------------
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------------------  344 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------------------  344 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+++.....                  
T Consensus       114 l~~lH~-~~i~H~dl~p~NIll~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (305)
T cd05609         114 LEYLHN-YGIVHRDLKPDNLLITSMG--------------------HIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFL  172 (305)
T ss_pred             HHHHHH-CCccccCCchHHEEECCCC--------------------CEEEeeCCCccccCcCccccccccccccchhhcc
Confidence            999999 9999999999999999887                    7999999998742111                  


Q ss_pred             --CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC-CccchHHHHHHHH
Q 013230          345 --DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR-SSKDERDLRSLKK  421 (447)
Q Consensus       345 --g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~-~~~~s~~l~dLl~  421 (447)
                        .......|++||.+.+.....+.|+|+ +|.+.+++..|..|+.+.................+. ....+.++++||+
T Consensus       173 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~s-lG~vl~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  251 (305)
T cd05609         173 DKQVCGTPEYIAPEVILRQGYGKPVDWWA-MGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPEGDEALPADAQDLIS  251 (305)
T ss_pred             ccCCccCccccCchhccCCCCCchhhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCCCCccccCCHHHHHHHH
Confidence              001123478999988767777789999 899999999999998765443333333322222332 2257889999999


Q ss_pred             Hhcccc--------CHHHHHcCCCCCCCC
Q 013230          422 RLDKYN--------SAKEAIFDPFFSDLI  442 (447)
Q Consensus       422 ~mL~~d--------sa~elL~HPff~~~~  442 (447)
                      +||..|        ++.++|+||||....
T Consensus       252 ~~l~~~P~~R~~~~~~~~ll~~~~~~~~~  280 (305)
T cd05609         252 RLLRQNPLERLGTGGAFEVKQHRFFLGLD  280 (305)
T ss_pred             HHhccChhhccCccCHHHHHhCccccCCC
Confidence            999999        489999999997653

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.97  E-value=4.5e-31  Score=261.04  Aligned_cols=232  Identities=22%  Similarity=0.292  Sum_probs=169.7

Q ss_pred             eEEeccccceEEEEec--------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          137 IVKVGEGTFGEAFLAG--------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       137 ~~~LG~G~fG~V~~a~--------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      ..+||+|+||.||+|+        .+|+|.+....          ....+.+|+.+++.++|        ||    |+++
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~----------~~~~~~~E~~~l~~l~h--------~n----iv~~   63 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG----------ISMSACREIALLRELKH--------PN----VIAL   63 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCC----------CcHHHHHHHHHHHhCCC--------CC----eeeE
Confidence            3689999999999997        28888775321          22457899999999998        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------------CCHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------------LNINEARSL  275 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------------l~~~~~~~i  275 (447)
                      ++++...+                            +..+|+||||+. | +|.+++.             +++..++.+
T Consensus        64 ~~~~~~~~----------------------------~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i  113 (317)
T cd07867          64 QKVFLSHS----------------------------DRKVWLLFDYAE-H-DLWHIIKFHRASKANKKPMQLPRSMVKSL  113 (317)
T ss_pred             EEEEeccC----------------------------CCeEEEEEeeeC-C-cHHHHHHhhhccccCCCCccCCHHHHHHH
Confidence            99865422                            456899999987 4 6666542             788899999


Q ss_pred             HHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--------CEE
Q 013230          276 LVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--------DIF  347 (447)
Q Consensus       276 ~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--------g~i  347 (447)
                      +.||+.||+|||+ .||+||||||+|||+..++.               . ...+||+|||+|+.....        +..
T Consensus       114 ~~qi~~aL~~lH~-~~ivH~Dlkp~Nil~~~~~~---------------~-~~~~kl~DfG~a~~~~~~~~~~~~~~~~~  176 (317)
T cd07867         114 LYQILDGIHYLHA-NWVLHRDLKPANILVMGEGP---------------E-RGRVKIADMGFARLFNSPLKPLADLDPVV  176 (317)
T ss_pred             HHHHHHHHHHHHh-CCEEcCCCCHHHEEEccCCC---------------C-CCcEEEeeccceeccCCCcccccccCcce
Confidence            9999999999999 99999999999999954321               0 016999999999865432        234


Q ss_pred             EEecCCCCCCCCCCC-CCchHHHHHhhccCCcccccCCCCCChhH---------HHHHHHHHHh----------------
Q 013230          348 FLDLSQDPELFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVL---------WLVYLVDMLL----------------  401 (447)
Q Consensus       348 ~~~~~~~pelf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~---------~~~~~~~~l~----------------  401 (447)
                      ....|++||.+.+.. ...+.|||+ +|++.+++++|..|+....         ....+.....                
T Consensus       177 ~t~~y~aPE~~~~~~~~~~~~DiwS-lG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (317)
T cd07867         177 VTFWYRAPELLLGARHYTKAIDIWA-IGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWEDIRKM  255 (317)
T ss_pred             ecccccCcHHhcCCCccCcHHHHHh-HHHHHHHHHhCCCCcccccccccccccccHHHHHHHHHhcCCCChhhhhhhhhc
Confidence            455589999987643 456679999 9999999999987774210         0000000000                


Q ss_pred             ----------hccCC---------C-CCccchHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          402 ----------LKKTF---------D-RSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       402 ----------~~~~~---------~-~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                                .....         . .....+..+++||.+||+.|     ||+|+|+||||
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07867         256 PEYPTLQKDFRRTTYANSSLIKYMEKHKVKPDSKVFLLLQKLLTMDPTKRITSEQALQDPYF  317 (317)
T ss_pred             ccchhhhhhhcccccCCchhhhhhhcccCCCChHHHHHHHHHhccCcccccCHHHHhcCCCC
Confidence                      00000         0 01124567999999999999     99999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.97  E-value=6.2e-31  Score=256.34  Aligned_cols=236  Identities=20%  Similarity=0.186  Sum_probs=174.7

Q ss_pred             EeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEE
Q 013230          139 KVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIK  212 (447)
Q Consensus       139 ~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~  212 (447)
                      .||+|+||.||+|++      +|+|.+.....     ..........+|..+++.+.+..         ||+|+.+++.+
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~   66 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRI-----KMKQGETLALNERIMLSLVSTGD---------CPFIVCMTYAF   66 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEcccc-----ccchHHHHHHHHHHHHHHHhhCC---------CCcEeEEEEEE
Confidence            389999999999873      89998875432     11111233455665555554322         34499998885


Q ss_pred             EEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHHHH
Q 013230          213 VCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVAEA  288 (447)
Q Consensus       213 ~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~ylH~  288 (447)
                      ..                              ++..|+||||+.+| +|.+++.    +++..++.++.|++.||+|||+
T Consensus        67 ~~------------------------------~~~~~lv~e~~~~~-~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~  115 (279)
T cd05633          67 HT------------------------------PDKLCFILDLMNGG-DLHYHLSQHGVFSEKEMRFYATEIILGLEHMHN  115 (279)
T ss_pred             ec------------------------------CCeEEEEEecCCCC-CHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            43                              45689999999988 9988875    8999999999999999999999


Q ss_pred             hCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC---EEEEecCCCCCCCC-CCCCC
Q 013230          289 AYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED---IFFLDLSQDPELFS-GPKGD  364 (447)
Q Consensus       289 ~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g---~i~~~~~~~pelf~-g~~~~  364 (447)
                       .||+||||||+|||++.++                    .++|+|||+++......   ......|++||.+. +...+
T Consensus       116 -~~ivH~dikp~Nil~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  174 (279)
T cd05633         116 -RFVVYRDLKPANILLDEHG--------------------HVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGTAYD  174 (279)
T ss_pred             -CCcCCCCCCHHHEEECCCC--------------------CEEEccCCcceeccccCccCcCCCcCccCHHHhcCCCCCC
Confidence             9999999999999999887                    79999999987543321   12234578999885 44456


Q ss_pred             chHHHHHhhccCCcccccCCCCCChhH--HHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----------CHHHH
Q 013230          365 KQFDTYRKMKKVTEDQWEGSFPKTNVL--WLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----------SAKEA  432 (447)
Q Consensus       365 ~~~di~s~lg~~~~~~~~~~~p~~~~~--~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----------sa~el  432 (447)
                      .+.|+|+ +|.+.+++++|..|+....  ......... .......+...++++++||++||..|          |++|+
T Consensus       175 ~~~Di~s-lG~~l~~l~~g~~pf~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~  252 (279)
T cd05633         175 SSADWFS-LGCMLFKLLRGHSPFRQHKTKDKHEIDRMT-LTVNVELPDSFSPELKSLLEGLLQRDVSKRLGCLGRGAQEV  252 (279)
T ss_pred             chhhhHH-HHHHHHHHHhCCCCcCCCCCcCHHHHHHHh-hcCCcCCccccCHHHHHHHHHHhcCCHHHhcCCCCCCHHHH
Confidence            6779999 8999999999998885321  111111111 11122234568899999999999999          59999


Q ss_pred             HcCCCCCCCC
Q 013230          433 IFDPFFSDLI  442 (447)
Q Consensus       433 L~HPff~~~~  442 (447)
                      ++||||+++.
T Consensus       253 ~~h~~~~~~~  262 (279)
T cd05633         253 KEHVFFKGID  262 (279)
T ss_pred             HhCccccCCC
Confidence            9999999864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.97  E-value=4.8e-31  Score=259.41  Aligned_cols=244  Identities=20%  Similarity=0.256  Sum_probs=191.6

Q ss_pred             hhhhhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCC
Q 013230          124 LLDLFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGD  197 (447)
Q Consensus       124 ~~~~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~  197 (447)
                      ..+...+|   ++++.||+|+||.||+|.+      ||+|.+.....        ...+.+.+|+.+++.++|       
T Consensus        14 ~~~~~~~y---~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~--------~~~~~~~~e~~~l~~~~h-------   75 (297)
T cd06656          14 VGDPKKKY---TRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQ--------PKKELIINEILVMRENKN-------   75 (297)
T ss_pred             cCChhhhc---eeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCcc--------chHHHHHHHHHHHHhCCC-------
Confidence            34445555   9999999999999999973      99998864321        223567899999999988       


Q ss_pred             CCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHH
Q 013230          198 TLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARS  274 (447)
Q Consensus       198 ~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~  274 (447)
                       +|    |+++++.+..                              .+..|+||||+.+| +|.+++.   +++..+..
T Consensus        76 -~~----i~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~  119 (297)
T cd06656          76 -PN----IVNYLDSYLV------------------------------GDELWVVMEYLAGG-SLTDVVTETCMDEGQIAA  119 (297)
T ss_pred             -CC----EeeEEEEEec------------------------------CCEEEEeecccCCC-CHHHHHHhCCCCHHHHHH
Confidence             88    9999998643                              46699999999988 9999876   88999999


Q ss_pred             HHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEE
Q 013230          275 LLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFL  349 (447)
Q Consensus       275 i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~  349 (447)
                      ++.|++.||.|||+ .||+||||||+|||++.++                    .++|+|||++.......     ....
T Consensus       120 ~~~~l~~~L~~LH~-~~i~H~dL~p~Nili~~~~--------------------~~~l~Dfg~~~~~~~~~~~~~~~~~~  178 (297)
T cd06656         120 VCRECLQALDFLHS-NQVIHRDIKSDNILLGMDG--------------------SVKLTDFGFCAQITPEQSKRSTMVGT  178 (297)
T ss_pred             HHHHHHHHHHHHHH-CCcccCCCCHHHEEECCCC--------------------CEEECcCccceEccCCccCcCcccCC
Confidence            99999999999999 9999999999999999887                    79999999987654331     1222


Q ss_pred             ecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh-hccCCCCCccchHHHHHHHHHhcccc-
Q 013230          350 DLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL-LKKTFDRSSKDERDLRSLKKRLDKYN-  427 (447)
Q Consensus       350 ~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~-~~~~~~~~~~~s~~l~dLl~~mL~~d-  427 (447)
                      ..|++||.+.+.....+.|+|+ +|.+.+++++|..|+........+..... .......+...+..+++|+.+||..| 
T Consensus       179 ~~y~aPE~~~~~~~~~~~Di~s-lGvil~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p  257 (297)
T cd06656         179 PYWMAPEVVTRKAYGPKVDIWS-LGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPERLSAVFRDFLNRCLEMDV  257 (297)
T ss_pred             ccccCHHHHcCCCCCcHHHHHH-HHHHHHHHHhCCCCCCCCCcchheeeeccCCCCCCCCccccCHHHHHHHHHHccCCh
Confidence            3478899888876777789999 89999999999999865322111111111 11122234567889999999999998 


Q ss_pred             ----CHHHHHcCCCCCCCCC
Q 013230          428 ----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       428 ----sa~elL~HPff~~~~~  443 (447)
                          |++++++||||+....
T Consensus       258 ~~Rps~~~il~~~~~~~~~~  277 (297)
T cd06656         258 DRRGSAKELLQHPFLKLAKP  277 (297)
T ss_pred             hhCcCHHHHhcCchhccccc
Confidence                9999999999986543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.97  E-value=1.3e-30  Score=253.47  Aligned_cols=234  Identities=23%  Similarity=0.328  Sum_probs=179.7

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|++      ||+|++....      ........+.+|+.+++.++|        ||    |+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~------~~~~~~~~~~~e~~~l~~l~h--------~~----i~   62 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLES------EEEGVPSTAIREISLLKELQH--------PN----IV   62 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEecccc------ccCCchHHHHHHHHHHHhcCC--------CC----Ee
Confidence            468999999999999999973      9999886542      122334667899999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------CCHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------LNINEARSLLVQV  279 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------l~~~~~~~i~~Qi  279 (447)
                      ++++++..                              ++.+|+||||+. | +|.+++.       +++..++.++.||
T Consensus        63 ~~~~~~~~------------------------------~~~~~~v~e~~~-~-~l~~~~~~~~~~~~~~~~~~~~~~~qi  110 (285)
T cd07861          63 CLQDVLMQ------------------------------ESRLYLIFEFLS-M-DLKKYLDSLPKGQYMDAELVKSYLYQI  110 (285)
T ss_pred             eeEEEEee------------------------------CCeEEEEEecCC-C-CHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence            99998543                              567999999997 5 7777653       7899999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQD  354 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~  354 (447)
                      +.||+|||+ .||+||||||+|||++.++                    .+||+|||+++......     .+....|++
T Consensus       111 ~~~L~~lH~-~~i~H~dl~p~nil~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~a  169 (285)
T cd07861         111 LQGILFCHS-RRVLHRDLKPQNLLIDNKG--------------------VIKLADFGLARAFGIPVRVYTHEVVTLWYRA  169 (285)
T ss_pred             HHHHHHHHh-CCeeecCCCHHHEEEcCCC--------------------cEEECcccceeecCCCcccccCCcccccccC
Confidence            999999999 9999999999999999887                    79999999997653321     122345889


Q ss_pred             CCCCCCCC-CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh------------------ccCCC--------
Q 013230          355 PELFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL------------------KKTFD--------  407 (447)
Q Consensus       355 pelf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~------------------~~~~~--------  407 (447)
                      ||.+.+.. ...+.|+|+ +|.+.++++++..|+....-.......+..                  ...++        
T Consensus       170 PE~~~~~~~~~~~~Dv~s-lG~il~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (285)
T cd07861         170 PEVLLGSPRYSTPVDIWS-IGTIFAEMATKKPLFHGDSEIDQLFRIFRILGTPTEDVWPGVTSLPDYKNTFPKWKKGSLR  248 (285)
T ss_pred             hHHhcCCCCcCcHHHHHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhcchhhHHHHhhccccCcchhH
Confidence            99887644 355679999 899999999998777532111111100000                  00000        


Q ss_pred             -CCccchHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          408 -RSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       408 -~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                       ....+++++++||++||..|     |+.+++.||||
T Consensus       249 ~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~~~~~  285 (285)
T cd07861         249 SAVKNLDEDGLDLLEKMLIYDPAKRISAKKALNHPYF  285 (285)
T ss_pred             HhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhcCCCC
Confidence             12346899999999999999     99999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.97  E-value=2.4e-30  Score=247.60  Aligned_cols=235  Identities=21%  Similarity=0.209  Sum_probs=185.5

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|++      +|+|.+..+..      .....+.+.+|+.++++++|        +|    ++
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~------~~~~~~~~~~e~~~l~~l~~--------~~----i~   62 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNA------SRRERKAAEQEAQLLSQLKH--------PN----IV   62 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhc------CHHHHHHHHHHHHHHHhCCC--------CC----ee
Confidence            369999999999999999973      99998875421      22234567889999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVT  280 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil  280 (447)
                      ++++.+..                             .+..+|++|||+.+| +|.+++.      +++.+++.++.|++
T Consensus        63 ~~~~~~~~-----------------------------~~~~~~lv~e~~~~~-~l~~~l~~~~~~~l~~~~~~~~~~~l~  112 (257)
T cd08223          63 AYRESWEG-----------------------------EDGLLYIVMGFCEGG-DLYHKLKEQKGKLLPENQVVEWFVQIA  112 (257)
T ss_pred             eeeeeecC-----------------------------CCCEEEEEecccCCC-cHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            98887421                             134589999999987 8988774      78999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----EEEecCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----FFLDLSQDP  355 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i~~~~~~~p  355 (447)
                      .||+|||+ .||+||||||+||+++.++                    .++|+|||++........     .....|++|
T Consensus       113 ~~l~~lH~-~~i~H~di~p~nil~~~~~--------------------~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aP  171 (257)
T cd08223         113 MALQYLHE-KHILHRDLKTQNVFLTRTN--------------------IIKVGDLGIARVLENQCDMASTLIGTPYYMSP  171 (257)
T ss_pred             HHHHHHHh-CCeeccCCCchhEEEecCC--------------------cEEEecccceEEecccCCccccccCCcCccCh
Confidence            99999999 9999999999999999887                    799999999987643211     122347899


Q ss_pred             CCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      |+..+.....+.|+|+ +|.+.+++.++..|+............. .....+.+...++++.+|+.+||..|     |+.
T Consensus       172 E~~~~~~~~~~~Dv~s-lG~il~~l~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~  249 (257)
T cd08223         172 ELFSNKPYNYKSDVWA-LGCCVYEMATLKHAFNAKDMNSLVYRII-EGKLPPMPKDYSPELGELIATMLSKRPEKRPSVK  249 (257)
T ss_pred             hHhcCCCCCchhhhHH-HHHHHHHHHcCCCCCCCCCHHHHHHHHH-hcCCCCCccccCHHHHHHHHHHhccCcccCCCHH
Confidence            9998876677779999 9999999999988876433222222222 12222334568899999999999999     999


Q ss_pred             HHHcCCCC
Q 013230          431 EAIFDPFF  438 (447)
Q Consensus       431 elL~HPff  438 (447)
                      ++++||||
T Consensus       250 ~~l~~~~~  257 (257)
T cd08223         250 SILRQPYI  257 (257)
T ss_pred             HHhcCCCC
Confidence            99999998

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.97  E-value=1.2e-30  Score=251.26  Aligned_cols=239  Identities=20%  Similarity=0.174  Sum_probs=186.4

Q ss_pred             CCcceEEeccccceEEEEece-----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN-----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~-----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      +|+..+.||+|+||.||+|..     +|+|.+..+...  ..........+.+|+.+++.++|        +|    |++
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~--~~~~~~~~~~~~~e~~~l~~l~~--------~~----i~~   66 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSN--VLAAEKEYEKLQEEVDLLKSLKH--------VN----IVQ   66 (265)
T ss_pred             CccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccc--hhhHHHHHHHHHHHHHHHHhcCC--------CC----Eee
Confidence            358889999999999999874     899988754320  01122234568899999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++..                              .+..|++|||+.|| +|.+++.    +++..++.++.|++.||
T Consensus        67 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~qi~~~l  115 (265)
T cd06631          67 YLGTCLD------------------------------DNTISIFMEFVPGG-SISSILNRFGPLPEPVFCKYTKQILDGV  115 (265)
T ss_pred             EeeEeec------------------------------CCeEEEEEecCCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            9998532                              56799999999988 9999875    89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----------EEEEecC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----------IFFLDLS  352 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----------~i~~~~~  352 (447)
                      +|||+ .||+|+||||+||+++.++                    .++|+|||+++.....+           ......|
T Consensus       116 ~~lH~-~~i~H~dl~p~nil~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (265)
T cd06631         116 AYLHN-NCVVHRDIKGNNVMLMPNG--------------------IIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYW  174 (265)
T ss_pred             HHHHh-CCcccCCcCHHhEEECCCC--------------------eEEeccchhhHhhhhccccccccccccccCCCccc
Confidence            99999 9999999999999999887                    79999999987643211           1112237


Q ss_pred             CCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhcc-CCCCCccchHHHHHHHHHhcccc----
Q 013230          353 QDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKK-TFDRSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       353 ~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~-~~~~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      ++||.+.+.....+.|+|+ +|.+.+++++|..|+...........+..... ..+.+..++.++.+||++||..+    
T Consensus       175 ~~pe~~~~~~~~~~~Dv~s-lG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R  253 (265)
T cd06631         175 MAPEVINESGYGRKSDIWS-IGCTVFEMATGKPPLASMDRLAAMFYIGAHRGLMPRLPDSFSAAAIDFVTSCLTRDQHER  253 (265)
T ss_pred             cChhhhcCCCCcchhhHHH-HHHHHHHHHhCCCccccCChHHHHHHhhhccCCCCCCCCCCCHHHHHHHHHHhcCCcccC
Confidence            8999998877777789999 89999999999999865432222222211111 12234568899999999999988    


Q ss_pred             -CHHHHHcCCCC
Q 013230          428 -SAKEAIFDPFF  438 (447)
Q Consensus       428 -sa~elL~HPff  438 (447)
                       |+.|+|+||||
T Consensus       254 p~~~~~l~~~~~  265 (265)
T cd06631         254 PSALQLLRHDFL  265 (265)
T ss_pred             CCHHHHhcCCCC
Confidence             99999999998

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.97  E-value=1.2e-30  Score=256.64  Aligned_cols=236  Identities=22%  Similarity=0.261  Sum_probs=190.1

Q ss_pred             CcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||.|+||.||+|.      .+|+|.+....        ....+.+.+|+.+++.++|        +|    |++
T Consensus        21 y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~--------~~~~~~~~~e~~~l~~l~h--------~~----iv~   80 (296)
T cd06655          21 YTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQK--------QPKKELIINEILVMKELKN--------PN----IVN   80 (296)
T ss_pred             EEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEeccc--------CchHHHHHHHHHHHHhcCC--------Cc----eee
Confidence            5999999999999999986      39999887432        1234567899999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~  284 (447)
                      +++++..                              .+.+|+||||+.+| +|..++.   +++.++..++.|++.||+
T Consensus        81 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~l~~~~~~~i~~~l~~al~  129 (296)
T cd06655          81 FLDSFLV------------------------------GDELFVVMEYLAGG-SLTDVVTETCMDEAQIAAVCRECLQALE  129 (296)
T ss_pred             eeeeEec------------------------------CceEEEEEEecCCC-cHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9998543                              56799999999988 9998877   899999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----EEEecCCCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----FFLDLSQDPELFS  359 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i~~~~~~~pelf~  359 (447)
                      |||+ .|++||||||+||+++.++                    .+||+|||+++.......     .....|++||.+.
T Consensus       130 ~LH~-~~i~H~dL~p~Nili~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~  188 (296)
T cd06655         130 FLHA-NQVIHRDIKSDNVLLGMDG--------------------SVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVT  188 (296)
T ss_pred             HHHH-CCcccCCCCHHHEEECCCC--------------------CEEEccCccchhcccccccCCCcCCCccccCcchhc
Confidence            9999 9999999999999999887                    799999999876543321     1223478999998


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh-ccCCCCCccchHHHHHHHHHhcccc-----CHHHHH
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL-KKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAI  433 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~-~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL  433 (447)
                      +.....+.|+|+ +|++.+++++|..|+............... ...+..+..+++.+++||++||..|     |+.+++
T Consensus       189 ~~~~~~~~Dv~s-lGvil~~lltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~il  267 (296)
T cd06655         189 RKAYGPKVDIWS-LGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKELL  267 (296)
T ss_pred             CCCCCchhhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCcccCCcccCCHHHHHHHHHHhhcChhhCCCHHHHh
Confidence            877777889999 899999999999998654322222222211 1233345568899999999999999     999999


Q ss_pred             cCCCCCCCC
Q 013230          434 FDPFFSDLI  442 (447)
Q Consensus       434 ~HPff~~~~  442 (447)
                      +||||+...
T Consensus       268 ~~~~~~~~~  276 (296)
T cd06655         268 QHPFLKLAK  276 (296)
T ss_pred             hChHhhhcc
Confidence            999998643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.97  E-value=9.7e-31  Score=257.13  Aligned_cols=241  Identities=20%  Similarity=0.252  Sum_probs=191.4

Q ss_pred             hhhhhccCCCcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCC
Q 013230          125 LDLFSKYSDPENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDT  198 (447)
Q Consensus       125 ~~~~~~y~~~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~  198 (447)
                      .+...+|   ++++.||+|+||.||+|+      .+|+|.+.....        ...+.+.+|+.+++.++|        
T Consensus        16 ~~~~~~y---~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~--------~~~~~~~~e~~~l~~~~h--------   76 (296)
T cd06654          16 GDPKKKY---TRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQ--------PKKELIINEILVMRENKN--------   76 (296)
T ss_pred             CCcccce---eeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCc--------chHHHHHHHHHHHHhCCC--------
Confidence            3344455   999999999999999997      389998875421        123567899999999988        


Q ss_pred             CCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHH
Q 013230          199 LNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSL  275 (447)
Q Consensus       199 ~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i  275 (447)
                      +|    |+++++.+..                              ....|+||||+.+| +|.+++.   +++.++..+
T Consensus        77 ~~----v~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~i  121 (296)
T cd06654          77 PN----IVNYLDSYLV------------------------------GDELWVVMEYLAGG-SLTDVVTETCMDEGQIAAV  121 (296)
T ss_pred             CC----EeeEEEEEEe------------------------------CCEEEEeecccCCC-CHHHHHHhcCCCHHHHHHH
Confidence            88    9999998654                              45699999999988 9999876   899999999


Q ss_pred             HHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEe
Q 013230          276 LVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLD  350 (447)
Q Consensus       276 ~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~  350 (447)
                      +.|++.||+|||+ .||+||||||+|||++.++                    .+||+|||+++......     .....
T Consensus       122 ~~ql~~aL~~LH~-~gi~H~dLkp~Nill~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~  180 (296)
T cd06654         122 CRECLQALEFLHS-NQVIHRDIKSDNILLGMDG--------------------SVKLTDFGFCAQITPEQSKRSTMVGTP  180 (296)
T ss_pred             HHHHHHHHHHHHH-CCcccCCCCHHHEEEcCCC--------------------CEEECccccchhccccccccCcccCCc
Confidence            9999999999999 9999999999999998887                    79999999987643321     12233


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh-ccCCCCCccchHHHHHHHHHhcccc--
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL-KKTFDRSSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~-~~~~~~~~~~s~~l~dLl~~mL~~d--  427 (447)
                      .|++||.+.+.....+.|+|+ +|++.++++.|..|+........+...... ....+.+..++..+.+|+.+||..|  
T Consensus       181 ~y~aPE~~~~~~~~~~~Dv~s-~Gvil~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~  259 (296)
T cd06654         181 YWMAPEVVTRKAYGPKVDIWS-LGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVE  259 (296)
T ss_pred             cccCHHHHcCCCCCccchHHH-HHHHHHHHHhCCCCCCCCCHHHhHHHHhcCCCCCCCCccccCHHHHHHHHHHCcCCcc
Confidence            588999998877777889999 899999999999998654322222222211 1122334567899999999999999  


Q ss_pred             ---CHHHHHcCCCCCCC
Q 013230          428 ---SAKEAIFDPFFSDL  441 (447)
Q Consensus       428 ---sa~elL~HPff~~~  441 (447)
                         |+.++++||||...
T Consensus       260 ~Rpt~~eil~~~~~~~~  276 (296)
T cd06654         260 KRGSAKELLQHQFLKIA  276 (296)
T ss_pred             cCcCHHHHhhChhhhcc
Confidence               99999999999754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.97  E-value=6.8e-31  Score=252.89  Aligned_cols=240  Identities=17%  Similarity=0.204  Sum_probs=186.7

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+..+.||+|+||.||+|++      +|+|++......  ..........+.+|+.++++++|        +|    |++
T Consensus         2 ~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~--~~~~~~~~~~~~~e~~~l~~l~h--------~~----iv~   67 (268)
T cd06630           2 WLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNT--SSEQEEVVEALRKEIRLMARLNH--------PH----IIR   67 (268)
T ss_pred             ccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCC--chhHHHHHHHHHHHHHHHHHcCC--------Cc----eeh
Confidence            58889999999999999973      999988754320  11122245778999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++..                              .+..++||||+.|| +|.+++.    +++..++.++.||+.||
T Consensus        68 ~~~~~~~------------------------------~~~~~~v~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~ql~~al  116 (268)
T cd06630          68 MLGATCE------------------------------DSHFNLFVEWMAGG-SVSHLLSKYGAFKEAVIINYTEQLLRGL  116 (268)
T ss_pred             hhceecc------------------------------CCeEEEEEeccCCC-cHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9998532                              56799999999987 9998875    88999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--------C-EEEEecCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--------D-IFFLDLSQD  354 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--------g-~i~~~~~~~  354 (447)
                      +|||+ +|++||||||+||+++.++.                   .+||+|||+++.....        + ......|++
T Consensus       117 ~~LH~-~~i~H~~i~~~nil~~~~~~-------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (268)
T cd06630         117 SYLHE-NQIIHRDVKGANLLIDSTGQ-------------------RLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMA  176 (268)
T ss_pred             HHHHh-CCeecCCCCHHHEEEcCCCC-------------------EEEEcccccccccccccccCCccccccccccceeC
Confidence            99999 99999999999999987752                   6999999998765432        1 122334789


Q ss_pred             CCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHH---HHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----
Q 013230          355 PELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWL---VYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       355 pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~---~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      ||.+.+.....+.|+|+ +|.+.++++.|..|+......   ...............+...++++++++.+||..+    
T Consensus       177 PE~~~~~~~~~~~Dv~s-lG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R  255 (268)
T cd06630         177 PEVLRGEQYGRSCDVWS-VGCVIIEMATAKPPWNAEKHSNHLALIFKIASATTAPSIPEHLSPGLRDVTLRCLELQPEDR  255 (268)
T ss_pred             HhHhccCCCCcccchHH-HHHHHHHHHhCCCCCCCCCCcchHHHHHHHhccCCCCCCchhhCHHHHHHHHHHcCCCcccC
Confidence            99988766667779999 899999999999887543211   1111221111222234567899999999999998    


Q ss_pred             -CHHHHHcCCCCC
Q 013230          428 -SAKEAIFDPFFS  439 (447)
Q Consensus       428 -sa~elL~HPff~  439 (447)
                       |+.++++||||+
T Consensus       256 ~~~~~ll~~~~~~  268 (268)
T cd06630         256 PPSRELLKHPVFR  268 (268)
T ss_pred             cCHHHHhcCcccC
Confidence             999999999995

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=4e-31  Score=256.81  Aligned_cols=238  Identities=24%  Similarity=0.333  Sum_probs=188.2

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+++++||.|+||.||+|+.      +|+|++....        ....+.+.+|+.+++.++|        +|    |++
T Consensus         7 ~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~--------~~~~~~~~~e~~~l~~l~h--------~~----i~~   66 (280)
T cd06611           7 WEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIES--------EEELEDFMVEIDILSECKH--------PN----IVG   66 (280)
T ss_pred             HHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCC--------HHHHHHHHHHHHHHHhCCC--------Cc----eeE
Confidence            59999999999999999973      8999876432        2234568899999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++.+..                              +..+|+||||+.+| +|.+++.     +++..++.++.|++.|
T Consensus        67 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~l~~~~~~~~~~ql~~~  115 (280)
T cd06611          67 LYEAYFY------------------------------ENKLWILIEFCDGG-ALDSIMLELERGLTEPQIRYVCRQMLEA  115 (280)
T ss_pred             EEEEEec------------------------------CCeEEEEeeccCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            9998543                              56699999999988 9988875     8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pel  357 (447)
                      |.|||+ .||+||||||+||+++.++                    .++|+|||++......     .......|++||.
T Consensus       116 l~~lh~-~~i~h~dl~p~nili~~~~--------------------~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~  174 (280)
T cd06611         116 LNFLHS-HKVIHRDLKAGNILLTLDG--------------------DVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEV  174 (280)
T ss_pred             HHHHHH-CCcccCCCChhhEEECCCC--------------------CEEEccCccchhhcccccccceeecchhhcCHHH
Confidence            999999 9999999999999999887                    7999999998764332     1222334788887


Q ss_pred             CCC-----CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc-cCCCCCccchHHHHHHHHHhcccc----
Q 013230          358 FSG-----PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK-KTFDRSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       358 f~g-----~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~-~~~~~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      +.+     ...+.+.|+|+ +|.+.++++.+..|+................ ..+..+..++.++.+||.+||+.+    
T Consensus       175 ~~~~~~~~~~~~~~sDi~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  253 (280)
T cd06611         175 VACETFKDNPYDYKADIWS-LGITLIELAQMEPPHHELNPMRVLLKILKSEPPTLDQPSKWSSSFNDFLKSCLVKDPDDR  253 (280)
T ss_pred             HhhcccCCCCCCccccHHH-HHHHHHHHHhCCCCcccCCHHHHHHHHhcCCCCCcCCcccCCHHHHHHHHHHhccChhhC
Confidence            642     23344669999 8999999999999987653333333332211 223334567899999999999999    


Q ss_pred             -CHHHHHcCCCCCCCCCC
Q 013230          428 -SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       428 -sa~elL~HPff~~~~~~  444 (447)
                       |+.++++||||.+....
T Consensus       254 ps~~~il~~~~~~~~~~~  271 (280)
T cd06611         254 PTAAELLKHPFVSDQSDN  271 (280)
T ss_pred             cCHHHHhcChhhcccchh
Confidence             99999999999987543

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.97  E-value=4.6e-31  Score=257.18  Aligned_cols=238  Identities=16%  Similarity=0.181  Sum_probs=184.5

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|++      +|+|.+....       .......+.+|+.++++++|        +|    |+
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~-------~~~~~~~~~~e~~~l~~~~~--------~~----i~   62 (286)
T cd06622           2 EIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLEL-------DESKFNQIIMELDILHKAVS--------PY----IV   62 (286)
T ss_pred             hhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeeccc-------CHHHHHHHHHHHHHHHhcCC--------Cc----HH
Confidence            469999999999999999973      8999886431       12233678899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------CCHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------LNINEARSLLVQV  279 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------l~~~~~~~i~~Qi  279 (447)
                      ++++.+..                              ++.+|+||||+.+| +|..++.       +++..++.++.||
T Consensus        63 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~i  111 (286)
T cd06622          63 DFYGAFFI------------------------------EGAVYMCMEYMDAG-SLDKLYAGGVATEGIPEDVLRRITYAV  111 (286)
T ss_pred             hhhhheec------------------------------CCeEEEEEeecCCC-CHHHHHHhccccCCCCHHHHHHHHHHH
Confidence            99998543                              56799999999987 8887764       7899999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC---EEEEecCCCCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED---IFFLDLSQDPE  356 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g---~i~~~~~~~pe  356 (447)
                      +.||.|||+.+||+||||||+|||++.++                    .+||+|||+++......   ......|++||
T Consensus       112 ~~~l~~LH~~~~i~H~dl~p~nil~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE  171 (286)
T cd06622         112 VKGLKFLKEEHNIIHRDVKPTNVLVNGNG--------------------QVKLCDFGVSGNLVASLAKTNIGCQSYMAPE  171 (286)
T ss_pred             HHHHHHHHhcCCEeeCCCCHHHEEECCCC--------------------CEEEeecCCcccccCCccccCCCccCccCcc
Confidence            99999999646999999999999999976                    79999999987643221   11223478999


Q ss_pred             CCCCCCC------CchHHHHHhhccCCcccccCCCCCChhHHHH---HHHHHHhhccCCCCCccchHHHHHHHHHhcccc
Q 013230          357 LFSGPKG------DKQFDTYRKMKKVTEDQWEGSFPKTNVLWLV---YLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       357 lf~g~~~------~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~---~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d  427 (447)
                      .+.+...      ..+.|+|+ +|++.++++.|..|+.......   .+..+. .......+..++.++++||++||..+
T Consensus       172 ~~~~~~~~~~~~~~~~~Diws-lG~il~~l~~g~~pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~  249 (286)
T cd06622         172 RIKSGGPNQNPTYTVQSDVWS-LGLSILEMALGRYPYPPETYANIFAQLSAIV-DGDPPTLPSGYSDDAQDFVAKCLNKI  249 (286)
T ss_pred             hhcCCCCCccCCCCcccchHh-HHHHHHHHHhCCCCCCCcchhhHHHHHHHHh-hcCCCCCCcccCHHHHHHHHHHcccC
Confidence            8865432      44569999 8999999999999985432222   112222 11222234558999999999999998


Q ss_pred             -----CHHHHHcCCCCCCCC
Q 013230          428 -----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 -----sa~elL~HPff~~~~  442 (447)
                           ++++++.||||....
T Consensus       250 p~~Rp~~~~l~~~~~~~~~~  269 (286)
T cd06622         250 PNRRPTYAQLLEHPWLVKYK  269 (286)
T ss_pred             cccCCCHHHHhcChhhhhcc
Confidence                 999999999997654

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.97  E-value=8.7e-31  Score=263.95  Aligned_cols=245  Identities=18%  Similarity=0.223  Sum_probs=184.4

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|+.++.||+|+||.||+|++      +|+|++....      ........+.+|+.+++.++|        +|    |+
T Consensus        17 ~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------~~----iv   78 (353)
T cd07850          17 RYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPF------QNVTHAKRAYRELVLMKLVNH--------KN----II   78 (353)
T ss_pred             ceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccc------cChhHHHHHHHHHHHHHhcCC--------CC----Cc
Confidence            349999999999999999973      8999876331      122234567889999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--CCHHHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--l~~~~~~~i~~Qil~gL~  284 (447)
                      +++++|...+.                        .......|+||||+. | +|.+.+.  +++..++.++.|++.||+
T Consensus        79 ~~~~~~~~~~~------------------------~~~~~~~~lv~e~~~-~-~l~~~~~~~l~~~~~~~~~~ql~~aL~  132 (353)
T cd07850          79 GLLNVFTPQKS------------------------LEEFQDVYLVMELMD-A-NLCQVIQMDLDHERMSYLLYQMLCGIK  132 (353)
T ss_pred             ceeeeeccCCC------------------------ccccCcEEEEEeccC-C-CHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence            99998653221                        112345899999996 5 7777765  899999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE----EEEecCCCCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI----FFLDLSQDPELFSG  360 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~----i~~~~~~~pelf~g  360 (447)
                      |||+ .||+||||||+|||++.++                    .+||+|||+++......+    .....|++||.+.+
T Consensus       133 ~LH~-~gi~H~dlkp~Nil~~~~~--------------------~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~  191 (353)
T cd07850         133 HLHS-AGIIHRDLKPSNIVVKSDC--------------------TLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILG  191 (353)
T ss_pred             HHHh-CCeeeCCCCHHHEEECCCC--------------------CEEEccCccceeCCCCCCCCCCcccccccCHHHHhC
Confidence            9999 9999999999999999987                    799999999987654322    23345889999988


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHH----------------------Hhhcc--------------
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDM----------------------LLLKK--------------  404 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~----------------------l~~~~--------------  404 (447)
                      .....+.|+|+ +|.+.++++.|..|+............                      .....              
T Consensus       192 ~~~~~~~Dvws-lG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (353)
T cd07850         192 MGYKENVDIWS-VGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRPKYAGYSFEELFPDV  270 (353)
T ss_pred             CCCCCchhhHh-HHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhhhhHHhhcCCCCCCcchhhhCccc
Confidence            77777889999 899999999988777432111100000                      00000              


Q ss_pred             CCCC-----CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          405 TFDR-----SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       405 ~~~~-----~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                      .++.     +...+.++++||.+||++|     |+.|+|+||||+.+..
T Consensus       271 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~~~~~~~~~~  319 (353)
T cd07850         271 LFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQHPYINVWYD  319 (353)
T ss_pred             ccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhcChhHhhccC
Confidence            0110     1134678999999999999     9999999999975544

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.97  E-value=1.4e-30  Score=251.22  Aligned_cols=240  Identities=19%  Similarity=0.202  Sum_probs=184.0

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+..+.||+|+||.||+|.+      +|+|++.....   .....+....+.+|+.+++.++|        +|    |+
T Consensus         3 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~~~~~~e~~~l~~l~h--------~~----i~   67 (266)
T cd06651           3 NWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPE---SPETSKEVSALECEIQLLKNLQH--------ER----IV   67 (266)
T ss_pred             CccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcC---CchhHHHHHHHHHHHHHHHHcCC--------CC----ee
Confidence            468899999999999999973      89998765421   01122334568899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++...                            ....+|++|||+.+| +|.+++.    +++..++.++.|++.|
T Consensus        68 ~~~~~~~~~----------------------------~~~~~~l~~e~~~~~-~L~~~l~~~~~l~~~~~~~~~~qi~~~  118 (266)
T cd06651          68 QYYGCLRDR----------------------------AEKTLTIFMEYMPGG-SVKDQLKAYGALTESVTRKYTRQILEG  118 (266)
T ss_pred             eEEEEEEcC----------------------------CCCEEEEEEeCCCCC-cHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            999875421                            135689999999977 8988875    8899999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----C----EEEEecCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----D----IFFLDLSQD  354 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g----~i~~~~~~~  354 (447)
                      |+|||+ ++|+||||||+||+++.++                    .+||+|||+++.....    .    ......|++
T Consensus       119 l~~LH~-~~i~H~~l~p~nil~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~a  177 (266)
T cd06651         119 MSYLHS-NMIVHRDIKGANILRDSAG--------------------NVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMS  177 (266)
T ss_pred             HHHHHh-CCeeeCCCCHHHEEECCCC--------------------CEEEccCCCccccccccccCCccccCCccccccC
Confidence            999999 9999999999999999876                    7999999998754321    1    112233789


Q ss_pred             CCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CH
Q 013230          355 PELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SA  429 (447)
Q Consensus       355 pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa  429 (447)
                      ||.+.+...+...|+|+ +|.+.+++++|..|+.....................+...++.+++|+ +||..+     |+
T Consensus       178 PE~~~~~~~~~~~Dv~s-lG~i~~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~p~~Rp~~  255 (266)
T cd06651         178 PEVISGEGYGRKADVWS-LGCTVVEMLTEKPPWAEYEAMAAIFKIATQPTNPQLPSHISEHARDFL-GCIFVEARHRPSA  255 (266)
T ss_pred             HHHhCCCCCCchhhhHH-HHHHHHHHHHCCCCccccchHHHHHHHhcCCCCCCCchhcCHHHHHHH-HHhcCChhhCcCH
Confidence            99998876667779999 899999999999998755333322222221112222445788999999 466667     99


Q ss_pred             HHHHcCCCCC
Q 013230          430 KEAIFDPFFS  439 (447)
Q Consensus       430 ~elL~HPff~  439 (447)
                      +|+++||||+
T Consensus       256 ~eil~hp~~~  265 (266)
T cd06651         256 EELLRHPFAQ  265 (266)
T ss_pred             HHHhcCcccc
Confidence            9999999997

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.97  E-value=1.3e-30  Score=253.49  Aligned_cols=238  Identities=21%  Similarity=0.237  Sum_probs=180.0

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCcccce
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTTF  205 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~i  205 (447)
                      .|++.+.||.|+||.||+|++      +|+|++....         .....+..|+.+++++ +|        +|    |
T Consensus        17 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~---------~~~~~~~~e~~~l~~~~~h--------~~----i   75 (282)
T cd06636          17 IFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE---------DEEEEIKLEINMLKKYSHH--------RN----I   75 (282)
T ss_pred             hhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh---------HHHHHHHHHHHHHHHhcCC--------Cc----E
Confidence            458999999999999999974      8999876432         1235678899999988 45        66    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQV  279 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qi  279 (447)
                      +++++++.....                        ....+.+|++|||+.+| +|.+++.      +++..++.++.||
T Consensus        76 ~~~~~~~~~~~~------------------------~~~~~~~~iv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~qi  130 (282)
T cd06636          76 ATYYGAFIKKSP------------------------PGHDDQLWLVMEFCGAG-SVTDLVKNTKGNALKEDWIAYICREI  130 (282)
T ss_pred             EEEeeehhcccc------------------------cCCCCEEEEEEEeCCCC-cHHHHHHHccCCCCCHHHHHHHHHHH
Confidence            999998653211                        11245689999999988 8988875      7888899999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQD  354 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~  354 (447)
                      +.||+|||+ .||+||||||+||+++.++                    .++|+|||+++.....     .......|++
T Consensus       131 ~~al~~LH~-~~ivH~dl~~~nili~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~a  189 (282)
T cd06636         131 LRGLAHLHA-HKVIHRDIKGQNVLLTENA--------------------EVKLVDFGVSAQLDRTVGRRNTFIGTPYWMA  189 (282)
T ss_pred             HHHHHHHHH-CCcccCCCCHHHEEECCCC--------------------CEEEeeCcchhhhhccccCCCcccccccccC
Confidence            999999999 9999999999999999887                    7999999998754321     2223344889


Q ss_pred             CCCCCC-----CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc--
Q 013230          355 PELFSG-----PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       355 pelf~g-----~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d--  427 (447)
                      ||.+..     ...+.+.|+|+ +|.+.++++.+..|+..................-.....++.++.+||.+||..|  
T Consensus       190 PE~l~~~~~~~~~~~~~~Dvws-lG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~  268 (282)
T cd06636         190 PEVIACDENPDATYDYRSDIWS-LGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPKLKSKKWSKKFIDFIEGCLVKNYL  268 (282)
T ss_pred             HhhcCcccCcCcCCCcccchhH-HHHHHHHHHhCCCCccccCHHhhhhhHhhCCCCCCcccccCHHHHHHHHHHhCCChh
Confidence            998752     23445679999 8999999999998886543222121111111111112357899999999999999  


Q ss_pred             ---CHHHHHcCCCC
Q 013230          428 ---SAKEAIFDPFF  438 (447)
Q Consensus       428 ---sa~elL~HPff  438 (447)
                         |+.|+|+||||
T Consensus       269 ~Rp~~~ell~~~~~  282 (282)
T cd06636         269 SRPSTEQLLKHPFI  282 (282)
T ss_pred             hCcCHHHHhcCCCC
Confidence               99999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.97  E-value=2.5e-31  Score=257.52  Aligned_cols=261  Identities=22%  Similarity=0.290  Sum_probs=181.5

Q ss_pred             hhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCc
Q 013230          128 FSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA  201 (447)
Q Consensus       128 ~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~  201 (447)
                      ..||   +++..+|+|+||.|-.|.+      ||+|+++         ...++.+..+-|+.+|+++++-   +   ||.
T Consensus        88 ~~Ry---~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik---------~V~kYreAa~iEi~vLqki~~~---D---P~g  149 (415)
T KOG0671|consen   88 TNRY---EIVDLLGEGTFGKVVECWDRETKEHVALKIIK---------NVDKYREAALIEIEVLQKINES---D---PNG  149 (415)
T ss_pred             ccce---ehhhhhcCCcccceEEEeecCCCceehHHHHH---------HHHHHhhHHHHHHHHHHHHHhc---C---CCC
Confidence            4555   9999999999999999974      9999887         4556778899999999999651   2   232


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHH
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSL  275 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i  275 (447)
                      ---+|.+.++|-.                              .++.|||+|.+  |.++.+++.      ++.+.++.+
T Consensus       150 ~~rcv~m~~wFdy------------------------------rghiCivfell--G~S~~dFlk~N~y~~fpi~~ir~m  197 (415)
T KOG0671|consen  150 KFRCVQMRDWFDY------------------------------RGHICIVFELL--GLSTFDFLKENNYIPFPIDHIRHM  197 (415)
T ss_pred             ceEEEeeehhhhc------------------------------cCceEEEEecc--ChhHHHHhccCCccccchHHHHHH
Confidence            2236788777544                              56699999988  479999987      999999999


Q ss_pred             HHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcc-cc-cccCCCcEEEeeccceeecCCC--CEEEEec
Q 013230          276 LVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQ-MF-VRTFGLSVTIIDFTLSRINTGE--DIFFLDL  351 (447)
Q Consensus       276 ~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~-~~-~~~~~~~vkL~DFGla~~~~~~--g~i~~~~  351 (447)
                      ..|++.+++|||+ .+++|.||||||||+.+....+...  ..+. .. -......|+|+|||.|+.....  ..+-+--
T Consensus       198 ~~QL~~sv~fLh~-~kl~HTDLKPENILfvss~~~~~~~--~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~hs~iVsTRH  274 (415)
T KOG0671|consen  198 GYQLLESVAFLHD-LKLTHTDLKPENILFVSSEYFKTYN--PKKKVCFIRPLKSTAIKVIDFGSATFDHEHHSTIVSTRH  274 (415)
T ss_pred             HHHHHHHHHHHHh-cceeecCCChheEEEeccceEEEec--cCCccceeccCCCcceEEEecCCcceeccCcceeeeccc
Confidence            9999999999999 9999999999999998876311111  1111 11 2223568999999999876554  2233344


Q ss_pred             CCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCC---hhHHHHHHHHHHh-------h-------------------
Q 013230          352 SQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKT---NVLWLVYLVDMLL-------L-------------------  402 (447)
Q Consensus       352 ~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~---~~~~~~~~~~~l~-------~-------------------  402 (447)
                      |.|||++.|-.....+|+|+ +|+++.+..+|..-|.   |..-+..+..++-       .                   
T Consensus       275 YRAPEViLgLGwS~pCDvWS-iGCIL~ElytG~~LFqtHen~EHLaMMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~  353 (415)
T KOG0671|consen  275 YRAPEVILGLGWSQPCDVWS-IGCILVELYTGETLFQTHENLEHLAMMERILGPIPSRMIKKTRKEKYFRRGRLDWPEVS  353 (415)
T ss_pred             cCCchheeccCcCCccCcee-eeeEEEEeeccceecccCCcHHHHHHHHHhhCCCcHHHhhhhhhHhhhhcccccCcccc
Confidence            66666666655555556666 6666666666652111   1110001000000       0                   


Q ss_pred             ---------------ccCCCCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCC
Q 013230          403 ---------------KKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       403 ---------------~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~  442 (447)
                                     +......+....++.|||++||.+|     |+.|||+||||+.+.
T Consensus       354 ~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~EAL~HpFF~~~~  413 (415)
T KOG0671|consen  354 SKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITLREALSHPFFARLT  413 (415)
T ss_pred             ccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccccHHHHhcCHHhhcCC
Confidence                           0001112234568999999999999     999999999999764

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.97  E-value=1.7e-30  Score=252.87  Aligned_cols=235  Identities=21%  Similarity=0.301  Sum_probs=183.0

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|++      +|+|.+...        .......+.+|+.+++.++|        +|    |++
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~--------~~~~~~~~~~e~~~l~~l~h--------~~----ii~   66 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTK--------SEEELEDYMVEIDILASCDH--------PN----IVK   66 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCC--------CHHHHHHHHHHHHHHHHCCC--------CC----eee
Confidence            37889999999999999974      677776532        12234567889999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++..                              ++..|+||||+.+| +|..++.     +++..+..++.|++.|
T Consensus        67 ~~~~~~~------------------------------~~~~~~v~e~~~~~-~l~~~~~~~~~~l~~~~~~~~~~qi~~~  115 (282)
T cd06643          67 LLDAFYY------------------------------ENNLWILIEFCAGG-AVDAVMLELERPLTEPQIRVVCKQTLEA  115 (282)
T ss_pred             EEEEEee------------------------------CCEEEEEEEecCCC-cHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            9998643                              46689999999988 8887653     8899999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pel  357 (447)
                      |.|||+ .||+||||||+|||++.++                    .+||+|||+++.....     .......|++||+
T Consensus       116 L~~LH~-~~i~H~dlkp~nili~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  174 (282)
T cd06643         116 LNYLHE-NKIIHRDLKAGNILFTLDG--------------------DIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEV  174 (282)
T ss_pred             HHHHHH-CCeeecCCCcccEEEccCC--------------------CEEEccccccccccccccccccccccccccCHhh
Confidence            999999 9999999999999999887                    7999999998764332     1122334889998


Q ss_pred             CCC-----CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc-cCCCCCccchHHHHHHHHHhcccc----
Q 013230          358 FSG-----PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK-KTFDRSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       358 f~g-----~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~-~~~~~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      +.+     ...+.+.|+|+ +|.+.++++.+..|+................ .....+..++.++++||++||..|    
T Consensus       175 ~~~~~~~~~~~~~~~Dv~s-lGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  253 (282)
T cd06643         175 VMCETSKDRPYDYKADVWS-LGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSEFKDFLKKCLEKNVDAR  253 (282)
T ss_pred             ccccCCCCCCCCccchhhh-HHHHHHHHccCCCCccccCHHHHHHHHhhcCCCCCCCccccCHHHHHHHHHHccCChhhC
Confidence            842     23344669999 8999999999998886543333333332111 122334567899999999999998    


Q ss_pred             -CHHHHHcCCCCCCC
Q 013230          428 -SAKEAIFDPFFSDL  441 (447)
Q Consensus       428 -sa~elL~HPff~~~  441 (447)
                       |++++++||||...
T Consensus       254 p~~~~il~~~~~~~~  268 (282)
T cd06643         254 WTTTQLLQHPFVTVN  268 (282)
T ss_pred             cCHHHHhcCCCEecc
Confidence             99999999999854

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.97  E-value=7.2e-31  Score=255.32  Aligned_cols=233  Identities=26%  Similarity=0.327  Sum_probs=176.8

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+.++.||+|+||.||+|++      +|+|.++....      .+.....+.+|+.+++.++|        +|    |++
T Consensus         2 y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~------~~~~~~~~~~ei~~l~~l~h--------~~----i~~   63 (284)
T cd07839           2 YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDD------DEGVPSSALREICLLKELKH--------KN----IVR   63 (284)
T ss_pred             ceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccc------cccCccchhHHHHHHHhcCC--------CC----eee
Confidence            58999999999999999973      89998875421      22233567889999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++.                              ..+.+|++|||+. | +|.+++.     +++..++.++.||+.|
T Consensus        64 ~~~~~~------------------------------~~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~~~~~~~~~qi~~a  111 (284)
T cd07839          64 LYDVLH------------------------------SDKKLTLVFEYCD-Q-DLKKYFDSCNGDIDPEIVKSFMFQLLKG  111 (284)
T ss_pred             HHHHhc------------------------------cCCceEEEEecCC-C-CHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            999843                              2567999999997 4 6766553     8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pel  357 (447)
                      |.|||+ .||+||||||+||+++.++                    .+||+|||+++......     ......|++||.
T Consensus       112 l~~LH~-~~i~H~dl~~~nil~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  170 (284)
T cd07839         112 LAFCHS-HNVLHRDLKPQNLLINKNG--------------------ELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDV  170 (284)
T ss_pred             HHHHHH-CCEecCCCCHHHEEEcCCC--------------------cEEECccchhhccCCCCCCcCCCccccCCcChHH
Confidence            999999 9999999999999999887                    79999999998654321     122334789998


Q ss_pred             CCCCC-CCchHHHHHhhccCCcccccCCCCCChhH-HHHHHHHH---H--------------hhccCCC----------C
Q 013230          358 FSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVL-WLVYLVDM---L--------------LLKKTFD----------R  408 (447)
Q Consensus       358 f~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~-~~~~~~~~---l--------------~~~~~~~----------~  408 (447)
                      +.+.. ...+.|+|+ +|.+.+++.++..|+.... ....+..+   +              .....++          .
T Consensus       171 ~~~~~~~~~~~Diws-lG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (284)
T cd07839         171 LFGAKLYSTSIDMWS-AGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPYPMYPATTSLVNV  249 (284)
T ss_pred             HhCCcccCcHHHHHH-HHHHHHHHHhcCCCCcCCCCHHHHHHHHHHHhCCCChHHhHHhhhcccccccCCCCCcchhhhh
Confidence            87644 456679999 8999999998877753211 11111100   0              0000010          0


Q ss_pred             CccchHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          409 SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       409 ~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                      ...+++++++||++||..|     |++++++||||
T Consensus       250 ~~~~~~~~~~li~~~l~~~P~~R~t~~~il~h~~f  284 (284)
T cd07839         250 VPKLNSTGRDLLQNLLVCNPVQRISAEEALQHPYF  284 (284)
T ss_pred             cccCCHHHHHHHHHHhcCChhhcCCHHHHhcCCCC
Confidence            1246889999999999999     99999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=1.2e-31  Score=289.33  Aligned_cols=266  Identities=25%  Similarity=0.256  Sum_probs=189.8

Q ss_pred             hccC-CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCc
Q 013230          129 SKYS-DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA  201 (447)
Q Consensus       129 ~~y~-~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~  201 (447)
                      +||. +|+.++.||+||||.||+|++      ||||+|+...       ..+....+.+|+.++.+|+|        || 
T Consensus       475 SRY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~-------s~~~~skI~rEVk~LArLnH--------pN-  538 (1351)
T KOG1035|consen  475 SRYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKA-------SDKLYSKILREVKLLARLNH--------PN-  538 (1351)
T ss_pred             hhHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCch-------HHHHHHHHHHHHHHHhhcCC--------cc-
Confidence            4443 469999999999999999995      9999998652       34455788999999999999        88 


Q ss_pred             ccceeeeeeEEEEeCCCchHH------HHHhhh-----------------------------cccccCC-----------
Q 013230          202 CTTFVEMFEIKVCQGPYDAAL------IQAWED-----------------------------WDDKHCS-----------  235 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l------~~~~~~-----------------------------~~~~~~~-----------  235 (447)
                         ||+++..|+....-+.++      -..|..                             ++++..+           
T Consensus       539 ---VVRYysAWVEs~~~~~~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~  615 (1351)
T KOG1035|consen  539 ---VVRYYSAWVESTAELTVLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESS  615 (1351)
T ss_pred             ---eeeeehhhhccCCccccccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCcccccccccccccccc
Confidence               999999988542111100      111111                             1110000           


Q ss_pred             ---CC---CC-------------------------------CCCC------CCCceEEEEEEecCccchhhhhc---C--
Q 013230          236 ---EN---DN-------------------------------PKEF------PENQRYIVFVLQHGGKDLESFVL---L--  267 (447)
Q Consensus       236 ---~~---~~-------------------------------~~~~------~~~~~~ivmE~~~gG~~L~~~i~---l--  267 (447)
                         ++   ++                               +...      ....+||-||||+.- .|.+++.   +  
T Consensus       616 ~d~e~~d~dedg~~~S~tS~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~-ll~~iI~~N~~~~  694 (1351)
T KOG1035|consen  616 TDEENDDSDEDGRNLSNTSDSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKT-LLRDIIRRNHFNS  694 (1351)
T ss_pred             CCcccccccccccccccccccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhh-HHHHHHHhcccch
Confidence               00   00                               0000      114589999999942 5666665   4  


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC-----
Q 013230          268 NINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT-----  342 (447)
Q Consensus       268 ~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~-----  342 (447)
                      ..+.++.+++||+.||+|+|+ .|||||||||.||+++.++                    .|||+|||+|+...     
T Consensus       695 ~~d~~wrLFreIlEGLaYIH~-~giIHRDLKP~NIFLd~~~--------------------~VKIGDFGLAt~~~~~~~~  753 (1351)
T KOG1035|consen  695 QRDEAWRLFREILEGLAYIHD-QGIIHRDLKPRNIFLDSRN--------------------SVKIGDFGLATDLKENLES  753 (1351)
T ss_pred             hhHHHHHHHHHHHHHHHHHHh-CceeeccCCcceeEEcCCC--------------------Ceeecccccchhhhhhhhh
Confidence            378999999999999999999 9999999999999999887                    79999999998711     


Q ss_pred             ------------------CCCEEEEecCCCCCCCCCCC---CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh
Q 013230          343 ------------------GEDIFFLDLSQDPELFSGPK---GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL  401 (447)
Q Consensus       343 ------------------~~g~i~~~~~~~pelf~g~~---~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~  401 (447)
                                        ..+.+.+.+|++||+|.+..   ++.+.|||+ +|++..+||-.   |...+-....-..+.
T Consensus       754 ~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYS-LGIVlFEM~yP---F~TsMERa~iL~~LR  829 (1351)
T KOG1035|consen  754 IDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYS-LGIVLFEMLYP---FGTSMERASILTNLR  829 (1351)
T ss_pred             HhhccCccccccCCCCcccccccceeeeecHHHhcccccccccchhhhHH-HHHHHHHHhcc---CCchHHHHHHHHhcc
Confidence                              01568889999999998876   566679999 99999999854   332211111222222


Q ss_pred             hccCCCCC----ccchHHHHHHHHHhcccc-----CHHHHHcCCCCCC
Q 013230          402 LKKTFDRS----SKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSD  440 (447)
Q Consensus       402 ~~~~~~~~----~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~  440 (447)
                       +..+|.+    ...-+.-..+|+.||..|     ||.|+|++.||..
T Consensus       830 -~g~iP~~~~f~~~~~~~e~slI~~Ll~hdP~kRPtA~eLL~s~llpp  876 (1351)
T KOG1035|consen  830 -KGSIPEPADFFDPEHPEEASLIRWLLSHDPSKRPTATELLNSELLPP  876 (1351)
T ss_pred             -cCCCCCCcccccccchHHHHHHHHHhcCCCccCCCHHHHhhccCCCc
Confidence             3334432    234567788999999999     9999999999973

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.97  E-value=3e-30  Score=248.61  Aligned_cols=241  Identities=20%  Similarity=0.183  Sum_probs=185.4

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||+|+||.||+|.+      ||+|++.....   ..........+.+|+.++++++|        +|    |+
T Consensus         3 ~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~---~~~~~~~~~~~~~E~~~l~~l~h--------~~----i~   67 (265)
T cd06652           3 NWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPE---SPETSKEVNALECEIQLLKNLLH--------ER----IV   67 (265)
T ss_pred             cceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcC---CcccHHHHHHHHHHHHHHHhcCC--------CC----ee
Confidence            468999999999999999873      99998864321   00112234678889999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++...                            ....+|++|||+.+| +|.+++.    +++..++.++.|++.|
T Consensus        68 ~~~~~~~~~----------------------------~~~~~~~v~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~l~~~  118 (265)
T cd06652          68 QYYGCLRDP----------------------------MERTLSIFMEHMPGG-SIKDQLKSYGALTENVTRKYTRQILEG  118 (265)
T ss_pred             eEEeEeccC----------------------------CCceEEEEEEecCCC-cHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            999874321                            124588999999988 9998875    7889999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--------CEEEEecCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--------DIFFLDLSQD  354 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--------g~i~~~~~~~  354 (447)
                      |+|||+ .||+|+||||+|||++.++                    .++|+|||+++.....        .......|++
T Consensus       119 l~~lH~-~~i~H~dl~p~nil~~~~~--------------------~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~a  177 (265)
T cd06652         119 VSYLHS-NMIVHRDIKGANILRDSVG--------------------NVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMS  177 (265)
T ss_pred             HHHHHh-CCEecCCCCHHHEEecCCC--------------------CEEECcCccccccccccccccccccCCCCccccC
Confidence            999999 9999999999999999887                    7999999999754321        1112234889


Q ss_pred             CCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----CHH
Q 013230          355 PELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----SAK  430 (447)
Q Consensus       355 pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----sa~  430 (447)
                      ||.+.+...+...|+|+ +|.+.+++..|..|+.....................+...+..+.++|++|+...    |++
T Consensus       178 PE~~~~~~~~~~~Dv~s-lG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~p~~Rp~~~  256 (265)
T cd06652         178 PEVISGEGYGRKADIWS-VGCTVVEMLTEKPPWAEFEAMAAIFKIATQPTNPVLPPHVSDHCRDFLKRIFVEAKLRPSAD  256 (265)
T ss_pred             hhhhcCCCCCcchhHHH-HHHHHHHHhhCCCCCCccchHHHHHHHhcCCCCCCCchhhCHHHHHHHHHHhcChhhCCCHH
Confidence            99998876667779999 8999999999999986543333333333222222234567889999999999522    999


Q ss_pred             HHHcCCCCC
Q 013230          431 EAIFDPFFS  439 (447)
Q Consensus       431 elL~HPff~  439 (447)
                      |+++|||+.
T Consensus       257 ~il~~~~~~  265 (265)
T cd06652         257 ELLRHTFVH  265 (265)
T ss_pred             HHhcCcccC
Confidence            999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.97  E-value=1.7e-30  Score=253.05  Aligned_cols=236  Identities=20%  Similarity=0.140  Sum_probs=175.7

Q ss_pred             EeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEE
Q 013230          139 KVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIK  212 (447)
Q Consensus       139 ~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~  212 (447)
                      .||+|+||.||+|+      .||+|.+..+..     ...........|..+++.+++..|     ||    |+.+++.+
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-----~~----i~~~~~~~   66 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRI-----KMKQGETLALNERIMLSLVSTGDC-----PF----IVCMSYAF   66 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeecccc-----ccchhHHHHHHHHHHHHHHHhCCC-----Cc----Eeeeeeee
Confidence            38999999999986      399998875432     111111234455555555443222     55    99998885


Q ss_pred             EEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHHHH
Q 013230          213 VCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVAEA  288 (447)
Q Consensus       213 ~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~ylH~  288 (447)
                      ..                              .+.+|+||||+.|| +|..++.    +++..++.++.|++.||.|||+
T Consensus        67 ~~------------------------------~~~~~~v~e~~~g~-~L~~~l~~~~~l~~~~~~~~~~ql~~~l~~lH~  115 (278)
T cd05606          67 HT------------------------------PDKLSFILDLMNGG-DLHYHLSQHGVFSEAEMRFYAAEIILGLEHMHN  115 (278)
T ss_pred             ec------------------------------CCEEEEEEecCCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            42                              56799999999988 8988775    8999999999999999999999


Q ss_pred             hCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---CEEEEecCCCCCCCCCC-CCC
Q 013230          289 AYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---DIFFLDLSQDPELFSGP-KGD  364 (447)
Q Consensus       289 ~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---g~i~~~~~~~pelf~g~-~~~  364 (447)
                       .+|+||||||+|||++.++                    .+||+|||+++.....   .......|++||.+.+. ..+
T Consensus       116 -~~i~H~di~p~nili~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  174 (278)
T cd05606         116 -RFVVYRDLKPANILLDEHG--------------------HVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYD  174 (278)
T ss_pred             -CCEEcCCCCHHHEEECCCC--------------------CEEEccCcCccccCccCCcCcCCCcCCcCcHHhcCCCCCC
Confidence             9999999999999999887                    7999999998754322   12233458899998643 455


Q ss_pred             chHHHHHhhccCCcccccCCCCCChh---HHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----------CHHH
Q 013230          365 KQFDTYRKMKKVTEDQWEGSFPKTNV---LWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----------SAKE  431 (447)
Q Consensus       365 ~~~di~s~lg~~~~~~~~~~~p~~~~---~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----------sa~e  431 (447)
                      ...|+|+ +|.+.++++.|..|+...   ..........  ......+...+.++.+|+.+||..+          ++.+
T Consensus       175 ~~~Di~s-~G~~l~~l~~g~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~  251 (278)
T cd05606         175 SSADWFS-LGCMLFKLLRGHSPFRQHKTKDKHEIDRMTL--TMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQE  251 (278)
T ss_pred             cccchHh-HHHHHHHHHhCCCCCCCCCccchHHHHHHhh--ccCCCCCCcCCHHHHHHHHHHhhcCHHhccCCCCCCHHH
Confidence            6679999 899999999999998654   1111111111  2233334557899999999999998          7999


Q ss_pred             HHcCCCCCCCCC
Q 013230          432 AIFDPFFSDLIV  443 (447)
Q Consensus       432 lL~HPff~~~~~  443 (447)
                      +++||||++...
T Consensus       252 ll~~~~~~~~~~  263 (278)
T cd05606         252 VKEHPFFRSLDW  263 (278)
T ss_pred             HHhCccccCCCc
Confidence            999999988743

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=2.4e-30  Score=256.76  Aligned_cols=146  Identities=26%  Similarity=0.361  Sum_probs=125.3

Q ss_pred             CCCCcchhhhhh--ccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhcc
Q 013230          118 HSAPTKLLDLFS--KYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN  189 (447)
Q Consensus       118 ~~~~~~~~~~~~--~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~  189 (447)
                      ...|+.+.+.|.  ||   .++++||.|.|++||+|.+      ||+|+++         ..+.+.+..+.||.+|++++
T Consensus        65 GYHpV~IGD~F~~gRY---~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvK---------SAqhYtEaAlDEIklL~~v~  132 (590)
T KOG1290|consen   65 GYHPVRIGDVFNGGRY---HVQRKLGWGHFSTVWLAWDTQNKRYVALKVVK---------SAQHYTEAALDEIKLLQQVR  132 (590)
T ss_pred             CCceeeccccccCceE---EEEEeccccccceeEEEeeccCCeEEEEEEEe---------hhhHHHHHHHHHHHHHHHHH
Confidence            778999999987  55   9999999999999999985      9999988         45667889999999999987


Q ss_pred             ccccCCCCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---
Q 013230          190 HLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---  266 (447)
Q Consensus       190 h~~~~~~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---  266 (447)
                      ..   +++.++ +..||+|+|.|...|+.                          ..++|+|+|++  |.+|..+|.   
T Consensus       133 ~~---Dp~~~~-~~~VV~LlD~FkhsGpN--------------------------G~HVCMVfEvL--GdnLLklI~~s~  180 (590)
T KOG1290|consen  133 EG---DPNDPG-KKCVVQLLDHFKHSGPN--------------------------GQHVCMVFEVL--GDNLLKLIKYSN  180 (590)
T ss_pred             hc---CCCCCC-CceeeeeeccceecCCC--------------------------CcEEEEEehhh--hhHHHHHHHHhC
Confidence            52   223344 45699999999998864                          45677788776  579999887   


Q ss_pred             ---CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecC
Q 013230          267 ---LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRN  307 (447)
Q Consensus       267 ---l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~  307 (447)
                         ++...++.|++||+.||.|||+++||||.||||||||+..+
T Consensus       181 YrGlpl~~VK~I~~qvL~GLdYLH~ecgIIHTDlKPENvLl~~~  224 (590)
T KOG1290|consen  181 YRGLPLSCVKEICRQVLTGLDYLHRECGIIHTDLKPENVLLCST  224 (590)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhcCccccCCCcceeeeecc
Confidence               99999999999999999999988999999999999999765

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.97  E-value=2.6e-30  Score=247.43  Aligned_cols=236  Identities=22%  Similarity=0.260  Sum_probs=187.7

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||.|+||.||+|.+      +|+|++....      ..+...+.+..|+.+++.++|        +|    |+
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~------~~~~~~~~~~~e~~~l~~l~~--------~~----i~   62 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGN------MTEKEKQQLVSEVNILRELKH--------PN----IV   62 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEeccc------CCHHHHHHHHHHHHHHHhcCC--------Cc----cc
Confidence            368999999999999999963      8999887542      223334678899999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQ  278 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Q  278 (447)
                      ++++.+...                            ....+|++|||+.+| +|.+++.        +++..++.++.|
T Consensus        63 ~~~~~~~~~----------------------------~~~~~~~~~e~~~~~-~L~~~l~~~~~~~~~l~~~~~~~~~~~  113 (265)
T cd08217          63 RYYDRIIDR----------------------------SNQTLYIVMEYCEGG-DLAQLIQKCKKERKYIEEEFIWRILTQ  113 (265)
T ss_pred             eeeeeeecC----------------------------CCCEEEEEehhccCC-CHHHHHHHHhhcccCCCHHHHHHHHHH
Confidence            999875431                            135689999999987 9988874        788999999999


Q ss_pred             HHHHHHHHH-----HhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----EE
Q 013230          279 VTAGLAVAE-----AAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----FF  348 (447)
Q Consensus       279 il~gL~ylH-----~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i~  348 (447)
                      |+.||+|||     + .+++||||||+||+++.++                    .+||+|||++........     ..
T Consensus       114 i~~~l~~lH~~~~~~-~~i~h~dl~p~nili~~~~--------------------~~kl~d~g~~~~~~~~~~~~~~~~~  172 (265)
T cd08217         114 LLLALYECHNRSDPG-NTVLHRDLKPANIFLDANN--------------------NVKLGDFGLAKILGHDSSFAKTYVG  172 (265)
T ss_pred             HHHHHHHHhcCcccc-CcceecCCCHHHEEEecCC--------------------CEEEecccccccccCCccccccccc
Confidence            999999999     8 9999999999999999887                    799999999987654431     23


Q ss_pred             EecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-
Q 013230          349 LDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-  427 (447)
Q Consensus       349 ~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-  427 (447)
                      ...|++||.+.+...+.+.|+|+ +|.+.++++.|..|+......... +.+........+...+.++.+|+.+||..+ 
T Consensus       173 ~~~~~~pE~~~~~~~~~~~Dv~s-lG~il~~l~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p  250 (265)
T cd08217         173 TPYYMSPEQLNHMSYDEKSDIWS-LGCLIYELCALSPPFTARNQLQLA-SKIKEGKFRRIPYRYSSELNEVIKSMLNVDP  250 (265)
T ss_pred             CCCccChhhhcCCCCCchhHHHH-HHHHHHHHHHCCCcccCcCHHHHH-HHHhcCCCCCCccccCHHHHHHHHHHccCCc
Confidence            34488999998877777789999 899999999999888654322222 222212222234567899999999999988 


Q ss_pred             ----CHHHHHcCCCC
Q 013230          428 ----SAKEAIFDPFF  438 (447)
Q Consensus       428 ----sa~elL~HPff  438 (447)
                          |++++++|||+
T Consensus       251 ~~Rp~~~~il~~~~~  265 (265)
T cd08217         251 DKRPSTEELLQLPLI  265 (265)
T ss_pred             ccCCCHHHHhhCCCC
Confidence                99999999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=9.3e-31  Score=276.00  Aligned_cols=243  Identities=19%  Similarity=0.217  Sum_probs=172.0

Q ss_pred             CcceEEeccccceEEEEece-------eEEEEEecCC--------Cc-ccccccccchHHHHHHHHHHHhccccccCCCC
Q 013230          134 PENIVKVGEGTFGEAFLAGN-------TVCKVVPIDG--------DL-KVNGEAQKKSEELLEEVVLSWTLNHLRRNEGD  197 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~-------vAiK~i~~~~--------~~-~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~  197 (447)
                      |+++++||+|+||+||+|..       ++.|.+....        .. ............+.+|+.+|+.++|       
T Consensus       150 Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~H-------  222 (501)
T PHA03210        150 FRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNH-------  222 (501)
T ss_pred             cEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCC-------
Confidence            49999999999999999852       2222110000        00 0000111233567899999999998       


Q ss_pred             CCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------CC
Q 013230          198 TLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------LN  268 (447)
Q Consensus       198 ~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------l~  268 (447)
                       +|    ||++++++..                              .+..|+||+++. + +|..++.         ..
T Consensus       223 -pn----Iv~l~~~~~~------------------------------~~~~~lv~e~~~-~-~l~~~l~~~~~~~~~~~~  265 (501)
T PHA03210        223 -EN----ILKIEEILRS------------------------------EANTYMITQKYD-F-DLYSFMYDEAFDWKDRPL  265 (501)
T ss_pred             -CC----cCcEeEEEEE------------------------------CCeeEEEEeccc-c-CHHHHHhhcccccccccc
Confidence             88    9999998643                              566899999986 4 6766653         33


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----
Q 013230          269 INEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----  344 (447)
Q Consensus       269 ~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----  344 (447)
                      ...++.++.||+.||+|||+ +|||||||||+|||++.++                    .+||+|||+|+.....    
T Consensus       266 ~~~~~~i~~ql~~aL~yLH~-~gIiHrDLKP~NILl~~~~--------------------~vkL~DFGla~~~~~~~~~~  324 (501)
T PHA03210        266 LKQTRAIMKQLLCAVEYIHD-KKLIHRDIKLENIFLNCDG--------------------KIVLGDFGTAMPFEKEREAF  324 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-CCeecCCCCHHHEEECCCC--------------------CEEEEeCCCceecCcccccc
Confidence            56788999999999999999 9999999999999999887                    7999999999875432    


Q ss_pred             --CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCC-CCChh--HHHHHHHHHHh----hccCCC--------
Q 013230          345 --DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSF-PKTNV--LWLVYLVDMLL----LKKTFD--------  407 (447)
Q Consensus       345 --g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~-p~~~~--~~~~~~~~~l~----~~~~~~--------  407 (447)
                        +.+....|++||++.+...+...|||+ +|++.++++.+.+ |+...  .....+.+.+.    ....++        
T Consensus       325 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwS-lGvil~ell~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  403 (501)
T PHA03210        325 DYGWVGTVATNSPEILAGDGYCEITDIWS-CGLILLDMLSHDFCPIGDGGGKPGKQLLKIIDSLSVCDEEFPDPPCKLFD  403 (501)
T ss_pred             cccccCCcCCCCchhhcCCCCCcHHHHHH-HHHHHHHHHHCCCCCccCCCCCHHHHHHHHHHhcccChhhcCCcHHHHHH
Confidence              223445689999999887778889999 9999999987754 33211  00011111000    000000        


Q ss_pred             ------------------CCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCC
Q 013230          408 ------------------RSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       408 ------------------~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~  442 (447)
                                        .....+.++.++|.+||++|     ||.|+|+||||+...
T Consensus       404 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~~Rpsa~elL~hp~f~~~~  461 (501)
T PHA03210        404 YIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFDWHLRPGAAELLALPLFSAEE  461 (501)
T ss_pred             HhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccCcccCcCHHHHhhChhhhcCC
Confidence                              01134667899999999999     999999999998754

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.97  E-value=2.7e-30  Score=248.80  Aligned_cols=239  Identities=18%  Similarity=0.235  Sum_probs=185.8

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCccc-ccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKV-NGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~-~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      |.+.+.||+|+||.||+|.+      +|+|.+........ .....+..+.+.+|+.++++++|        ||    |+
T Consensus         2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h--------~~----i~   69 (267)
T cd06628           2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQH--------EN----IV   69 (267)
T ss_pred             ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCC--------CC----ee
Confidence            47788999999999999963      99998765432100 00111233578899999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              ++..++||||+.+| +|.+++.    +++..++.++.|++.|
T Consensus        70 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~l~~~~~~~~~~~l~~~  118 (267)
T cd06628          70 QYLGSSLD------------------------------ADHLNIFLEYVPGG-SVAALLNNYGAFEETLVRNFVRQILKG  118 (267)
T ss_pred             eEEEEEEe------------------------------CCccEEEEEecCCC-CHHHHHHhccCccHHHHHHHHHHHHHH
Confidence            99998543                              56689999999977 9998886    8899999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-------E----EEEec
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-------I----FFLDL  351 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-------~----i~~~~  351 (447)
                      |+|||+ +|++||||||+|||++.++                    .+||+|||+++......       +    .....
T Consensus       119 l~~lH~-~~ivH~di~p~nil~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (267)
T cd06628         119 LNYLHN-RGIIHRDIKGANILVDNKG--------------------GIKISDFGISKKLEANSLSTKTNGARPSLQGSVF  177 (267)
T ss_pred             HHHHHh-cCcccccCCHHHEEEcCCC--------------------CEEecccCCCcccccccccCCccccccccCCCcC
Confidence            999999 9999999999999998887                    79999999988765321       0    11234


Q ss_pred             CCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----
Q 013230          352 SQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       352 ~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      |++||.+.+...+.+.|+|+ +|.+.+++++|..|+.............. ......+...+.++++||++||+.|    
T Consensus       178 y~~pe~~~~~~~~~~~Dv~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~R  255 (267)
T cd06628         178 WMAPEVVKQTSYTRKADIWS-LGCLVVEMLTGKHPFPDCTQLQAIFKIGE-NASPEIPSNISSEAIDFLEKTFEIDHNKR  255 (267)
T ss_pred             ccChhHhccCCCCchhhhHH-HHHHHHHHhhCCCCCCCccHHHHHHHHhc-cCCCcCCcccCHHHHHHHHHHccCCchhC
Confidence            78899888766667779999 99999999999999865433222222211 1122234567899999999999998    


Q ss_pred             -CHHHHHcCCCC
Q 013230          428 -SAKEAIFDPFF  438 (447)
Q Consensus       428 -sa~elL~HPff  438 (447)
                       ++.|+++||||
T Consensus       256 p~~~~il~~~~~  267 (267)
T cd06628         256 PTAAELLKHPFL  267 (267)
T ss_pred             cCHHHHhhCCCC
Confidence             99999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.97  E-value=3.3e-30  Score=254.47  Aligned_cols=241  Identities=23%  Similarity=0.273  Sum_probs=183.4

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||+|+||.||+|.+      ||+|++.....      .........+|+.++++++|        +|    |+
T Consensus         8 ~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~------~~~~~~~~~~E~~~l~~l~h--------~~----i~   69 (309)
T cd07845           8 EFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNE------RDGIPISSLREITLLLNLRH--------PN----IV   69 (309)
T ss_pred             ceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccC------CCCCcchhhHHHHHHHhCCC--------CC----Cc
Confidence            459999999999999999973      99998875432      11222345789999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      ++++++...                            ..+.+|+||||+. | +|.+++.     +++..++.++.||+.
T Consensus        70 ~~~~~~~~~----------------------------~~~~~~lv~e~~~-~-~l~~~l~~~~~~l~~~~~~~~~~qi~~  119 (309)
T cd07845          70 ELKEVVVGK----------------------------HLDSIFLVMEYCE-Q-DLASLLDNMPTPFSESQVKCLMLQLLR  119 (309)
T ss_pred             ceEEEEecC----------------------------CCCeEEEEEecCC-C-CHHHHHHhcccCCCHHHHHHHHHHHHH
Confidence            999986431                            1245899999997 4 6776654     799999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pe  356 (447)
                      ||+|||+ .|++||||||+|||++.++                    .+||+|||+++.....     .......|++||
T Consensus       120 ~l~~lH~-~~i~H~dl~p~nil~~~~~--------------------~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE  178 (309)
T cd07845         120 GLQYLHE-NFIIHRDLKVSNLLLTDKG--------------------CLKIADFGLARTYGLPAKPMTPKVVTLWYRAPE  178 (309)
T ss_pred             HHHHHHh-CCeecCCCCHHHEEECCCC--------------------CEEECccceeeecCCccCCCCcccccccccChh
Confidence            9999999 9999999999999999887                    7999999999876533     223334488999


Q ss_pred             CCCCC-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc-----------------cCC--CC--------
Q 013230          357 LFSGP-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK-----------------KTF--DR--------  408 (447)
Q Consensus       357 lf~g~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~-----------------~~~--~~--------  408 (447)
                      .+.+. ....+.|+|+ +|.+.++++.+..|+........+.......                 ..+  +.        
T Consensus       179 ~~~~~~~~~~~~Dvws-lG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (309)
T cd07845         179 LLLGCTTYTTAIDMWA-VGCILAELLAHKPLLPGKSEIEQLDLIIQLLGTPNESIWPGFSDLPLVGKFTLPKQPYNNLKH  257 (309)
T ss_pred             hhcCCCCcCchHHHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChhhchhhhcccccccccccCCCCCchHH
Confidence            88663 3456679999 9999999999998876443322222111100                 000  00        


Q ss_pred             -CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          409 -SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       409 -~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                       ....++++.|||++||++|     |++|+++||||++...
T Consensus       258 ~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~h~~f~~~~~  298 (309)
T cd07845         258 KFPWLSEAGLRLLNFLLMYDPKKRATAEEALESSYFKEKPL  298 (309)
T ss_pred             hccccCHHHHHHHHHHhcCChhhCcCHHHHhcChhhccCCC
Confidence             1125889999999999999     9999999999986644

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.97  E-value=4.6e-30  Score=250.92  Aligned_cols=238  Identities=21%  Similarity=0.255  Sum_probs=182.8

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCcccce
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTTF  205 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~i  205 (447)
                      +|++.+.||+|+||.||+|.+      +|+|++....         .....+.+|+.+++++ +|        ||    +
T Consensus        23 ~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~---------~~~~~~~~e~~~l~~l~~h--------~n----i   81 (291)
T cd06639          23 TWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS---------DVDEEIEAEYNILQSLPNH--------PN----V   81 (291)
T ss_pred             CeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc---------cHHHHHHHHHHHHHHhcCC--------CC----e
Confidence            459999999999999999873      8899875321         1235677899999988 56        77    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLV  277 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~  277 (447)
                      +++++++.....                         ......|+||||+.+| +|.+++.        +++..++.++.
T Consensus        82 ~~~~~~~~~~~~-------------------------~~~~~~~lv~ey~~~~-sL~~~~~~~~~~~~~~~~~~~~~~~~  135 (291)
T cd06639          82 VKFYGMFYKADK-------------------------LVGGQLWLVLELCNGG-SVTELVKGLLICGQRLDEAMISYILY  135 (291)
T ss_pred             EEEEEEEEeccc-------------------------cCCCeeEEEEEECCCC-cHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence            999998654211                         1135689999999988 9988763        78999999999


Q ss_pred             HHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecC
Q 013230          278 QVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLS  352 (447)
Q Consensus       278 Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~  352 (447)
                      |++.||+|||+ .||+||||||+||+++.++                    .+||+|||+++.....     .......|
T Consensus       136 qi~~al~~lH~-~~ivH~dlkp~nili~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~y  194 (291)
T cd06639         136 GALLGLQHLHN-NRIIHRDVKGNNILLTTEG--------------------GVKLVDFGVSAQLTSTRLRRNTSVGTPFW  194 (291)
T ss_pred             HHHHHHHHHHh-CCeeccCCCHHHEEEcCCC--------------------CEEEeecccchhcccccccccCccCCccc
Confidence            99999999999 9999999999999999887                    7999999998864432     11223347


Q ss_pred             CCCCCCCCCC-----CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh-ccCCCCCccchHHHHHHHHHhccc
Q 013230          353 QDPELFSGPK-----GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL-KKTFDRSSKDERDLRSLKKRLDKY  426 (447)
Q Consensus       353 ~~pelf~g~~-----~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~-~~~~~~~~~~s~~l~dLl~~mL~~  426 (447)
                      ++||.+.+..     .+.+.|+|+ +|.+.+++.+|..|+........+.+.... ...+..+...+.++.+||.+||..
T Consensus       195 ~aPE~~~~~~~~~~~~~~~~Di~s-lGvi~~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~  273 (291)
T cd06639         195 MAPEVIACEQQYDYSYDARCDVWS-LGITAIELGDGDPPLFDMHPVKTLFKIPRNPPPTLLHPEKWCRSFNHFISQCLIK  273 (291)
T ss_pred             cChhhhcCCCCcccccCCccchHH-HHHHHHHHhhCCCCCCCCcHHHHHHHHhcCCCCCCCcccccCHHHHHHHHHHhhc
Confidence            8999886432     345669999 899999999999888664433333332211 112223445778999999999999


Q ss_pred             c-----CHHHHHcCCCCC
Q 013230          427 N-----SAKEAIFDPFFS  439 (447)
Q Consensus       427 d-----sa~elL~HPff~  439 (447)
                      |     |+.|+++||||+
T Consensus       274 ~p~~Rps~~~il~~~~~~  291 (291)
T cd06639         274 DFEARPSVTHLLEHPFIK  291 (291)
T ss_pred             ChhhCcCHHHHhcCcccC
Confidence            8     999999999995

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=8.7e-31  Score=263.25  Aligned_cols=238  Identities=16%  Similarity=0.165  Sum_probs=185.5

Q ss_pred             CCcceEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          133 DPENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      .|+++++||+||-+.||+++     .+|+|.+....      .+.+....+..|+.+|.+|+.           +..||+
T Consensus       362 ~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~------~D~qtl~gy~nEI~lL~KLkg-----------~~~IIq  424 (677)
T KOG0596|consen  362 EYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLE------ADNQTLDGYRNEIALLNKLKG-----------HDKIIQ  424 (677)
T ss_pred             hhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhh------cCHHHHHHHHHHHHHHHHhcC-----------CceEEE
Confidence            46999999999999999997     38888665432      355667889999999999986           233999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      ++|+-+.                              ++.+|+||||=+  .||.++++     ++...+++|..|++.|
T Consensus       425 L~DYEv~------------------------------d~~lYmvmE~Gd--~DL~kiL~k~~~~~~~~~lk~ywkqML~a  472 (677)
T KOG0596|consen  425 LYDYEVT------------------------------DGYLYMVMECGD--IDLNKILKKKKSIDPDWFLKFYWKQMLLA  472 (677)
T ss_pred             Eeeeecc------------------------------CceEEEEeeccc--ccHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence            9999543                              677999999876  89999988     5556999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-------EEEecCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-------FFLDLSQDP  355 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-------i~~~~~~~p  355 (447)
                      +.++|. .||||.||||.|.|+...                     .+||+|||.|..+.....       +.+--||.|
T Consensus       473 V~~IH~-~gIVHSDLKPANFLlVkG---------------------~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsP  530 (677)
T KOG0596|consen  473 VKTIHQ-HGIVHSDLKPANFLLVKG---------------------RLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSP  530 (677)
T ss_pred             HHHHHH-hceeecCCCcccEEEEee---------------------eEEeeeechhcccCccccceeeccccCcccccCH
Confidence            999999 999999999999999987                     699999999988766522       334448999


Q ss_pred             CCCCCCCCC-----------chHHHHHhhccCCcccccCCCCCChhH-HHHHHHHHHhhcc--CCCCCccchHHHHHHHH
Q 013230          356 ELFSGPKGD-----------KQFDTYRKMKKVTEDQWEGSFPKTNVL-WLVYLVDMLLLKK--TFDRSSKDERDLRSLKK  421 (447)
Q Consensus       356 elf~g~~~~-----------~~~di~s~lg~~~~~~~~~~~p~~~~~-~~~~~~~~l~~~~--~~~~~~~~s~~l~dLl~  421 (447)
                      |-+......           ...|||+ +|++.|.|.-|..||..-. ...-+..+.....  .||.... ..++.++++
T Consensus       531 EAl~~~~s~~~~~~~k~Ki~r~SDvWS-LGCILYqMvYgktPf~~~~n~~aKl~aI~~P~~~Iefp~~~~-~~~li~~mK  608 (677)
T KOG0596|consen  531 EALTDMSSSRENGKSKIKISRKSDVWS-LGCILYQMVYGKTPFGQIINQIAKLHAITDPNHEIEFPDIPE-NDELIDVMK  608 (677)
T ss_pred             HHHhhccccccCCCcceeecCccchhh-hhhHHHHHHhcCCchHHHHHHHHHHHhhcCCCccccccCCCC-chHHHHHHH
Confidence            998543322           3449999 9999999999999986542 1112222221112  3443221 223999999


Q ss_pred             Hhcccc-----CHHHHHcCCCCCCCCC
Q 013230          422 RLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       422 ~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                      .||.+|     |+.++|+|||.+....
T Consensus       609 ~CL~rdPkkR~si~eLLqhpFl~~~~i  635 (677)
T KOG0596|consen  609 CCLARDPKKRWSIPELLQHPFLQIQPI  635 (677)
T ss_pred             HHHhcCcccCCCcHHHhcCcccccccc
Confidence            999999     9999999999987543

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.8e-30  Score=249.23  Aligned_cols=236  Identities=19%  Similarity=0.203  Sum_probs=178.0

Q ss_pred             EEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHH-hccccccCCCCCCCcccceeeeee
Q 013230          138 VKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSW-TLNHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~-~L~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      +.||+|+||.||+|.+      +|+|+++....     ...........|..++. .++|        +|    ++++++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~-----~~~~~~~~~~~e~~~~~~~~~~--------~~----i~~~~~   64 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDM-----IAKNQVTNVKAERAIMMIQGES--------PY----VAKLYY   64 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhh-----hHHHHHHHHHHHHHHHhhcCCC--------CC----eeeeee
Confidence            6799999999999973      99998864321     11111223344544443 3455        66    999998


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHH
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVA  286 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~yl  286 (447)
                      ++..                              .+.+|+||||+.+| +|.+++.    +++..+..++.||+.||.||
T Consensus        65 ~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~l  113 (260)
T cd05611          65 SFQS------------------------------KDYLYLVMEYLNGG-DCASLIKTLGGLPEDWAKQYIAEVVLGVEDL  113 (260)
T ss_pred             eEEc------------------------------CCeEEEEEeccCCC-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            8542                              56799999999988 9999885    89999999999999999999


Q ss_pred             HHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-EEEecCCCCCCCCCCCCCc
Q 013230          287 EAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-FFLDLSQDPELFSGPKGDK  365 (447)
Q Consensus       287 H~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-i~~~~~~~pelf~g~~~~~  365 (447)
                      |+ .+++||||+|+||+++.++                    .+||+|||+++....... .....|++||.+.+.....
T Consensus       114 H~-~~i~H~dl~p~nil~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~  172 (260)
T cd05611         114 HQ-RGIIHRDIKPENLLIDQTG--------------------HLKLTDFGLSRNGLENKKFVGTPDYLAPETILGVGDDK  172 (260)
T ss_pred             HH-CCeecCCCCHHHeEECCCC--------------------cEEEeecccceeccccccCCCCcCccChhhhcCCCCcc
Confidence            99 9999999999999999887                    799999999986543221 1223478999998876666


Q ss_pred             hHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc--------CHHHHHcC
Q 013230          366 QFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN--------SAKEAIFD  435 (447)
Q Consensus       366 ~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d--------sa~elL~H  435 (447)
                      +.|+|+ +|.+.++++.|..|+..................++.  ....++++++++++||..|        +++|+|.|
T Consensus       173 ~~Dv~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~l~~  251 (260)
T cd05611         173 MSDWWS-LGCVIFEFLFGYPPFHAETPDAVFDNILSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLGANGYQEIKSH  251 (260)
T ss_pred             hhhhHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCCCcccccCCHHHHHHHHHHccCCHHHccCCCcHHHHHcC
Confidence            779999 999999999999998654333332222222222222  2347899999999999998        55899999


Q ss_pred             CCCCCCCC
Q 013230          436 PFFSDLIV  443 (447)
Q Consensus       436 Pff~~~~~  443 (447)
                      |||+++..
T Consensus       252 ~~~~~~~~  259 (260)
T cd05611         252 PFFKSINW  259 (260)
T ss_pred             hHhhcCCC
Confidence            99998754

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.97  E-value=4.3e-30  Score=245.86  Aligned_cols=233  Identities=22%  Similarity=0.235  Sum_probs=188.3

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+.++.||.|+||.||.++.      +|+|.+.....      .......+.+|+.++++++|        +|    |++
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~------~~~~~~~~~~e~~~l~~~~h--------~~----i~~   63 (256)
T cd08221           2 YIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRL------SEKERRDALNEIVILSLLQH--------PN----IIA   63 (256)
T ss_pred             ceEeeEecccCCceEEEEEEcCCCcEEEEEEEeeccc------chhHHHHHHHHHHHHHhCCC--------CC----eeE
Confidence            58999999999999998873      89998875432      22334567899999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +++++..                              .+.++++|||+.+| +|.+++.      +++..+..++.|++.
T Consensus        64 ~~~~~~~------------------------------~~~~~~~~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~l~~  112 (256)
T cd08221          64 YYNHFMD------------------------------DNTLLIEMEYANGG-TLYDKIVRQKGQLFEEEMVLWYLFQIVS  112 (256)
T ss_pred             EEeEEec------------------------------CCeEEEEEEecCCC-cHHHHHHhccccCCCHHHHHHHHHHHHH
Confidence            9999643                              56699999999988 9998874      788999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pe  356 (447)
                      ||.|||+ .|++||||||+||+++.++                    .+||+|||+++......     ......|.+||
T Consensus       113 ~l~~lh~-~~i~h~dl~p~ni~~~~~~--------------------~~kl~d~~~~~~~~~~~~~~~~~~~~~~y~ape  171 (256)
T cd08221         113 AVSYIHK-AGILHRDIKTLNIFLTKAG--------------------LIKLGDFGISKILGSEYSMAETVVGTPYYMSPE  171 (256)
T ss_pred             HHHHHHh-CCccccCCChHhEEEeCCC--------------------CEEECcCcceEEcccccccccccCCCccccCHh
Confidence            9999999 9999999999999999887                    79999999998764443     22334578899


Q ss_pred             CCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHH
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKE  431 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~e  431 (447)
                      ++.+.....+.|+|+ +|.+.++++.+..|+...........+... ...+.+...+.++.+|+.+||..+     |+.+
T Consensus       172 ~~~~~~~~~~~Dv~s-lG~i~~~l~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~p~~R~s~~~  249 (256)
T cd08221         172 LCQGVKYNFKSDIWA-LGCVLYELLTLKRTFDATNPLNLVVKIVQG-NYTPVVSVYSSELISLVHSLLQQDPEKRPTADE  249 (256)
T ss_pred             hcCCCCCCCcchhHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHHcC-CCCCCccccCHHHHHHHHHHcccCcccCCCHHH
Confidence            888766667789999 999999999998887654443333343322 222223557899999999999988     9999


Q ss_pred             HHcCCCC
Q 013230          432 AIFDPFF  438 (447)
Q Consensus       432 lL~HPff  438 (447)
                      +++|||+
T Consensus       250 ll~~~~l  256 (256)
T cd08221         250 VLDQPLL  256 (256)
T ss_pred             HhhCcCC
Confidence            9999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.97  E-value=6e-31  Score=244.79  Aligned_cols=234  Identities=18%  Similarity=0.232  Sum_probs=185.1

Q ss_pred             cceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      +.+..||.|+.|+|++++.      .|+|.++...       +....++++..+.++.+-           |-||.||+.
T Consensus        95 ~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~-------Nkee~kRILmDldvv~~s-----------~dcpyIV~c  156 (391)
T KOG0983|consen   95 ENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTG-------NKEENKRILMDLDVVLKS-----------HDCPYIVQC  156 (391)
T ss_pred             hhHHhhcCCCccceEEEEEcccceEEEEEeecccC-------CHHHHHHHHHhhhHHhhc-----------cCCCeeeee
Confidence            7788999999999999973      8999988553       222335667777776553           348889999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~gL  283 (447)
                      +++|+.                              +..++|+||.|.  .=++.+++     +++..+-.+...++.||
T Consensus       157 ~GyFi~------------------------------n~dV~IcMelMs--~C~ekLlkrik~piPE~ilGk~tva~v~AL  204 (391)
T KOG0983|consen  157 FGYFIT------------------------------NTDVFICMELMS--TCAEKLLKRIKGPIPERILGKMTVAIVKAL  204 (391)
T ss_pred             eeEEee------------------------------CchHHHHHHHHH--HHHHHHHHHhcCCchHHhhhhhHHHHHHHH
Confidence            999876                              566999999886  44555544     89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-------CEEEEecCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-------DIFFLDLSQDPE  356 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-------g~i~~~~~~~pe  356 (447)
                      .||.+.+||||||+||+|||++..+                    .|||||||.|-...+.       ||   ..|||||
T Consensus       205 ~YLKeKH~viHRDvKPSNILlDe~G--------------------niKlCDFGIsGrlvdSkAhtrsAGC---~~YMaPE  261 (391)
T KOG0983|consen  205 YYLKEKHGVIHRDVKPSNILLDERG--------------------NIKLCDFGISGRLVDSKAHTRSAGC---AAYMAPE  261 (391)
T ss_pred             HHHHHhcceeecccCccceEEccCC--------------------CEEeecccccceeecccccccccCC---ccccCcc
Confidence            9999779999999999999999998                    7999999999765443       55   5679999


Q ss_pred             CCCCC---CCCchHHHHHhhccCCcccccCCCCCChh-HHHHHHHHHHhhc-cCCCCCccchHHHHHHHHHhcccc----
Q 013230          357 LFSGP---KGDKQFDTYRKMKKVTEDQWEGSFPKTNV-LWLVYLVDMLLLK-KTFDRSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       357 lf~g~---~~~~~~di~s~lg~~~~~~~~~~~p~~~~-~~~~~~~~~l~~~-~~~~~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      -....   +++-..|+|+ +|+...+..+|.+|+.+. .-...+.+++... +.++.....|+++++|+..||++|    
T Consensus       262 Ridp~~~~kYDiRaDVWS-lGITlveLaTg~yPy~~c~tdFe~ltkvln~ePP~L~~~~gFSp~F~~fv~~CL~kd~r~R  340 (391)
T KOG0983|consen  262 RIDPPDKPKYDIRADVWS-LGITLVELATGQYPYKGCKTDFEVLTKVLNEEPPLLPGHMGFSPDFQSFVKDCLTKDHRKR  340 (391)
T ss_pred             ccCCCCCCccchhhhhhh-hccchhhhhcccCCCCCCCccHHHHHHHHhcCCCCCCcccCcCHHHHHHHHHHhhcCcccC
Confidence            88543   4455669999 999999999999999763 2233455555322 334444568999999999999999    


Q ss_pred             -CHHHHHcCCCCCCCC
Q 013230          428 -SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 -sa~elL~HPff~~~~  442 (447)
                       .-.++|+|||+....
T Consensus       341 P~Y~~Ll~h~Fi~~ye  356 (391)
T KOG0983|consen  341 PKYNKLLEHPFIKRYE  356 (391)
T ss_pred             cchHHHhcCcceeecc
Confidence             889999999998653

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.97  E-value=4e-30  Score=245.60  Aligned_cols=234  Identities=21%  Similarity=0.268  Sum_probs=188.1

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+..+.||+|+||.||+|.+      +|+|.+.....      .......+.+|+.+++.++|        +|    +++
T Consensus         2 y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~------~~~~~~~~~~e~~~l~~~~~--------~~----i~~   63 (256)
T cd08220           2 YEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQM------TKDERLAAQNECQVLKLLSH--------PN----IIE   63 (256)
T ss_pred             ceEEEEecccCceEEEEEEEcCCCcEEEEEEEecccc------ccHHHHHHHHHHHHHhhCCC--------Cc----hhh
Confidence            58999999999999999873      99998875421      22334678899999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +++.+..                              .+..++||||+.+| +|.+++.      +++..++.++.|++.
T Consensus        64 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~i~~  112 (256)
T cd08220          64 YYENFLE------------------------------DKALMIVMEYAPGG-TLAEYIQKRCNSLLDEDTILHFFVQILL  112 (256)
T ss_pred             eeeeEec------------------------------CCEEEEEEecCCCC-CHHHHHHHhcccCCCHHHHHHHHHHHHH
Confidence            9988543                              56699999999988 9998875      788999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPEL  357 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pel  357 (447)
                      ||+|||+ +||+||||||+||+++.++.                   .+||+|||+++......    ......|++||.
T Consensus       113 ~l~~lh~-~~i~h~dl~~~nil~~~~~~-------------------~~~l~d~~~~~~~~~~~~~~~~~~~~~y~aPE~  172 (256)
T cd08220         113 ALHHVHT-KLILHRDLKTQNILLDKHKM-------------------VVKIGDFGISKILSSKSKAYTVVGTPCYISPEL  172 (256)
T ss_pred             HHHHHHh-CCeecCCCCHHHEEEcCCCC-------------------EEEEccCCCceecCCCccccccccCCcccCchh
Confidence            9999999 99999999999999987652                   68999999998765432    223345899999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHH
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEA  432 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~el  432 (447)
                      +.+.....+.|+|+ +|.+.++++.+..|+............. .....+.+...++++++|+.+||..|     |+.|+
T Consensus       173 ~~~~~~~~~~Dv~s-lG~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l  250 (256)
T cd08220         173 CEGKPYNQKSDIWA-LGCVLYELASLKRAFEAANLPALVLKIM-SGTFAPISDRYSPDLRQLILSMLNLDPSKRPQLSQI  250 (256)
T ss_pred             ccCCCCCcccchHH-HHHHHHHHHhCCCCcccCchHHHHHHHH-hcCCCCCCCCcCHHHHHHHHHHccCChhhCCCHHHH
Confidence            98876677789999 8999999999988886544333332322 12223334568899999999999998     99999


Q ss_pred             HcCCCC
Q 013230          433 IFDPFF  438 (447)
Q Consensus       433 L~HPff  438 (447)
                      ++||||
T Consensus       251 l~~p~~  256 (256)
T cd08220         251 MAQPIC  256 (256)
T ss_pred             hhCCCC
Confidence            999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.97  E-value=1.4e-30  Score=264.93  Aligned_cols=231  Identities=19%  Similarity=0.176  Sum_probs=177.7

Q ss_pred             CCcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCC
Q 013230          133 DPENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLN  200 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n  200 (447)
                      +|++.++||+|+||.||+|+           .||+|++....       .....+.+.+|+.+++.+ +|        ||
T Consensus        36 ~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~-------~~~~~~~~~~Ei~il~~l~~H--------pn  100 (375)
T cd05104          36 RLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSA-------HLTEREALMSELKVLSYLGNH--------IN  100 (375)
T ss_pred             HeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCc-------CcHHHHHHHHHHHHHHHhcCC--------cc
Confidence            34899999999999999985           38999876331       122335788999999999 66        77


Q ss_pred             cccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------------
Q 013230          201 ACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------------  266 (447)
Q Consensus       201 ~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------------  266 (447)
                          |+++++++..                              .+..|+|||||.|| +|.+++.              
T Consensus       101 ----Iv~l~~~~~~------------------------------~~~~~lv~E~~~~g-~L~~~l~~~~~~~~~~~~~~~  145 (375)
T cd05104         101 ----IVNLLGACTV------------------------------GGPTLVITEYCCYG-DLLNFLRRKRDSFICPKHEDH  145 (375)
T ss_pred             ----eeeeeeeecc------------------------------CCcceeeehhccCC-cHHHHHHhcccccccccccch
Confidence                9999998533                              45689999999998 8877762              


Q ss_pred             -----------------------------------------------------------------CCHHHHHHHHHHHHH
Q 013230          267 -----------------------------------------------------------------LNINEARSLLVQVTA  281 (447)
Q Consensus       267 -----------------------------------------------------------------l~~~~~~~i~~Qil~  281 (447)
                                                                                       +++..+..++.||+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~  225 (375)
T cd05104         146 AEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAK  225 (375)
T ss_pred             hhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccceecccccHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence                                                                             466778899999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-------EEEecCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-------FFLDLSQD  354 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-------i~~~~~~~  354 (447)
                      ||+|||+ .||+||||||+|||++.++                    .+||+|||+++.......       .....|++
T Consensus       226 ~l~~lH~-~~ivH~Dlkp~Nill~~~~--------------------~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~a  284 (375)
T cd05104         226 GMSFLAS-KNCIHRDLAARNILLTHGR--------------------ITKICDFGLARDIRNDSNYVVKGNARLPVKWMA  284 (375)
T ss_pred             HHHHHHH-CCeeccCCchhhEEEECCC--------------------cEEEecCccceeccCcccccccCCCCCCcceeC
Confidence            9999999 9999999999999999876                    799999999986543321       11123789


Q ss_pred             CCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C
Q 013230          355 PELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S  428 (447)
Q Consensus       355 pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s  428 (447)
                      ||.+.+.......|+|+ +|.+.+++++ +..|+..........+.+........+...+.++++|+.+||..|     |
T Consensus       285 PE~~~~~~~~~~sDi~s-lG~~l~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs  363 (375)
T cd05104         285 PESIFNCVYTFESDVWS-YGILLWEIFSLGSSPYPGMPVDSKFYKMIKEGYRMLSPECAPSEMYDIMKSCWDADPLKRPT  363 (375)
T ss_pred             hhHhcCCCCCCCCCHHH-HHHHHHHHHhcCCCCCCCCCchHHHHHHHHhCccCCCCCCCCHHHHHHHHHHccCChhHCcC
Confidence            99998877777789999 8999999886 677775443222233333222223334456789999999999999     9


Q ss_pred             HHHHHcC
Q 013230          429 AKEAIFD  435 (447)
Q Consensus       429 a~elL~H  435 (447)
                      +.|+++.
T Consensus       364 ~~eil~~  370 (375)
T cd05104         364 FKQIVQL  370 (375)
T ss_pred             HHHHHHH
Confidence            9998864

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.97  E-value=2e-30  Score=250.01  Aligned_cols=232  Identities=21%  Similarity=0.248  Sum_probs=179.4

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.++||+|+||.||+|++      +|+|+++....        .....+.+|+.+++.++|        ||    |+
T Consensus        10 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~--------~~~~~~~~e~~~~~~l~h--------~~----ii   69 (267)
T cd06645          10 DFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPG--------EDFAVVQQEIIMMKDCKH--------SN----IV   69 (267)
T ss_pred             HHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCch--------hHHHHHHHHHHHHHhCCC--------CC----ee
Confidence            348889999999999999973      89998874421        123457889999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++.+..                              .+.+|+||||+.+| +|.+++.    +++..++.++.|++.|
T Consensus        70 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~i~~~  118 (267)
T cd06645          70 AYFGSYLR------------------------------RDKLWICMEFCGGG-SLQDIYHVTGPLSESQIAYVSRETLQG  118 (267)
T ss_pred             eEEEEEEe------------------------------CCEEEEEEeccCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            99998654                              56699999999987 9998875    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pel  357 (447)
                      |+|||+ .||+||||||+||+++.++                    .+||+|||++......     .......|++||.
T Consensus       119 l~~lH~-~~i~H~dlkp~nili~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  177 (267)
T cd06645         119 LYYLHS-KGKMHRDIKGANILLTDNG--------------------HVKLADFGVSAQITATIAKRKSFIGTPYWMAPEV  177 (267)
T ss_pred             HHHHHH-CCeecCCCCHHHEEECCCC--------------------CEEECcceeeeEccCcccccccccCcccccChhh
Confidence            999999 9999999999999999887                    7999999998765322     1122345889998


Q ss_pred             CC---CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc---cCCCCCccchHHHHHHHHHhcccc----
Q 013230          358 FS---GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK---KTFDRSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       358 f~---g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~---~~~~~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      +.   +...+.+.|+|+ +|.+.+++..+..|+................   ..+.....++..+++|+++||..|    
T Consensus       178 ~~~~~~~~~~~~~DvwS-lG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R  256 (267)
T cd06645         178 AAVERKGGYNQLCDIWA-VGITAIELAELQPPMFDLHPMRALFLMTKSNFQPPKLKDKMKWSNSFHHFVKMALTKNPKKR  256 (267)
T ss_pred             hccccCCCCCchhhhHH-HHHHHHHHhcCCCCcccccchhhHHhhhccCCCCCcccccCCCCHHHHHHHHHHccCCchhC
Confidence            74   333455679999 8999999999988875432111111111111   111112246789999999999998    


Q ss_pred             -CHHHHHcCCC
Q 013230          428 -SAKEAIFDPF  437 (447)
Q Consensus       428 -sa~elL~HPf  437 (447)
                       |++++++|||
T Consensus       257 ~~~~~ll~~~~  267 (267)
T cd06645         257 PTAEKLLQHPF  267 (267)
T ss_pred             cCHHHHhcCCC
Confidence             9999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.97  E-value=4.5e-30  Score=249.53  Aligned_cols=234  Identities=24%  Similarity=0.276  Sum_probs=180.4

Q ss_pred             CcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||.||+|+      .+|+|++.....      .......+.+|+.+++.++|        +|    |++
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~------~~~~~~~~~~e~~~l~~~~~--------~~----i~~   63 (286)
T cd07832           2 YKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRL------EGGIPNQALREIKALQACQH--------PY----VVK   63 (286)
T ss_pred             ceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccc------cchhhHHHHHHHHHHHhCCC--------CC----Ccc
Confidence            6899999999999999997      399998875431      22334678999999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++..                              ...+|+||||+ +| +|.+++.     +++..++.++.||+.|
T Consensus        64 ~~~~~~~------------------------------~~~~~~v~e~~-~~-~L~~~~~~~~~~~~~~~~~~~~~~i~~~  111 (286)
T cd07832          64 LLDVFPH------------------------------GSGFVLVMEYM-PS-DLSEVLRDEERPLPEAQVKSYMRMLLKG  111 (286)
T ss_pred             eeeEEec------------------------------CCeeEEEeccc-CC-CHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            9998543                              56799999999 77 9998874     7999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------EEEEecCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------IFFLDLSQDPE  356 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------~i~~~~~~~pe  356 (447)
                      |+|||+ .||+|+||||+||+++.++                    .++|+|||+++.....+      ......|++||
T Consensus       112 l~~lH~-~~i~H~dl~p~ni~~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE  170 (286)
T cd07832         112 VAYMHA-NGIMHRDLKPANLLISADG--------------------VLKIADFGLARLFSEEEPRLYSHQVATRWYRAPE  170 (286)
T ss_pred             HHHHHH-CCeecCCcCHHHEEEcCCC--------------------cEEEeeeeecccccCCCCCccccccCcccccCce
Confidence            999999 9999999999999999987                    79999999998765432      12233478999


Q ss_pred             CCCCCCC-CchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh-------------------hccCCCC--------
Q 013230          357 LFSGPKG-DKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL-------------------LKKTFDR--------  408 (447)
Q Consensus       357 lf~g~~~-~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~-------------------~~~~~~~--------  408 (447)
                      .+.+... ..+.|+|+ +|.+.++++++..++....-...+...+.                   ....++.        
T Consensus       171 ~~~~~~~~~~~~Di~s-lG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (286)
T cd07832         171 LLYGARKYDPGVDLWA-VGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPESKPIPLEE  249 (286)
T ss_pred             eeeccccCCchhHHHH-HHHHHHHHHcCCcCcCCCCHHHHHHHHHHHcCCCChHHHhhccCcchhhcccCCCCCcchHHH
Confidence            8866443 55679999 99999999999655533211111111110                   0001110        


Q ss_pred             -CccchHHHHHHHHHhcccc-----CHHHHHcCCCCC
Q 013230          409 -SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFS  439 (447)
Q Consensus       409 -~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~  439 (447)
                       ....+.++++||++||.+|     |++++|+||||.
T Consensus       250 ~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~h~~~~  286 (286)
T cd07832         250 IFPDASPEALDLLKGLLVYDPSKRLSAAEALRHPYFT  286 (286)
T ss_pred             hCCCccHHHHHHHHHHhccChhhCCCHHHHhhCcCcC
Confidence             1245789999999999999     999999999995

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.97  E-value=1.5e-30  Score=264.65  Aligned_cols=230  Identities=19%  Similarity=0.200  Sum_probs=177.8

Q ss_pred             CCcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCC
Q 013230          133 DPENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLN  200 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n  200 (447)
                      +|++.+.||+|+||.||+|+           .||+|++....       .....+.+.+|+.+++.+ +|        +|
T Consensus        39 ~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~~~E~~il~~l~~h--------~n  103 (374)
T cd05106          39 NLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASA-------HTDEREALMSELKILSHLGQH--------KN  103 (374)
T ss_pred             HceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCC-------CHHHHHHHHHHHHHHHhhccC--------Cc
Confidence            35899999999999999886           38999886432       112346688999999999 67        77


Q ss_pred             cccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------------
Q 013230          201 ACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------------  266 (447)
Q Consensus       201 ~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------------  266 (447)
                          ||++++++..                              .+.+|+|||||.+| +|.+++.              
T Consensus       104 ----Iv~~~~~~~~------------------------------~~~~~lv~ey~~~g-~L~~~l~~~~~~~~~~~~~~~  148 (374)
T cd05106         104 ----IVNLLGACTH------------------------------GGPVLVITEYCCYG-DLLNFLRKKAETFLNFVMALP  148 (374)
T ss_pred             ----eeeEeeEecC------------------------------CCCeEEeHhhccCC-cHHHHHHhhhhhhcccccccc
Confidence                9999998533                              45689999999988 8887752              


Q ss_pred             ------------------------------------------------------------CCHHHHHHHHHHHHHHHHHH
Q 013230          267 ------------------------------------------------------------LNINEARSLLVQVTAGLAVA  286 (447)
Q Consensus       267 ------------------------------------------------------------l~~~~~~~i~~Qil~gL~yl  286 (447)
                                                                                  +++..++.++.||+.||+||
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yL  228 (374)
T cd05106         149 EISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFL  228 (374)
T ss_pred             ccccccccccccchhcccccccccccccccccccccCCccccccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence                                                                        46678899999999999999


Q ss_pred             HHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-E------EEecCCCCCCCC
Q 013230          287 EAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-F------FLDLSQDPELFS  359 (447)
Q Consensus       287 H~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-i------~~~~~~~pelf~  359 (447)
                      |+ +||+||||||+|||++.++                    .+||+|||+++....... .      ....|++||.+.
T Consensus       229 H~-~giiHrDLkp~Nil~~~~~--------------------~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~  287 (374)
T cd05106         229 AS-KNCIHRDVAARNVLLTDGR--------------------VAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIF  287 (374)
T ss_pred             HH-CCEEeccCchheEEEeCCC--------------------eEEEeeceeeeeccCCcceeeccCCCCccceeCHHHhc
Confidence            99 9999999999999999876                    799999999986543321 1      112388999887


Q ss_pred             CCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHH
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAI  433 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL  433 (447)
                      +...+.+.|+|+ +|.+.+++.+ |..|+.....................+...++++++++.+||..|     |+.+++
T Consensus       288 ~~~~~~~~DvwS-lGvil~ellt~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~l~  366 (374)
T cd05106         288 DCVYTVQSDVWS-YGILLWEIFSLGKSPYPGILVNSKFYKMVKRGYQMSRPDFAPPEIYSIMKMCWNLEPTERPTFSQIS  366 (374)
T ss_pred             CCCCCccccHHH-HHHHHHHHHhCCCCCCccccccHHHHHHHHcccCccCCCCCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence            767777789999 8999999986 888886543322223333222233334557899999999999998     888876


Q ss_pred             c
Q 013230          434 F  434 (447)
Q Consensus       434 ~  434 (447)
                      +
T Consensus       367 ~  367 (374)
T cd05106         367 Q  367 (374)
T ss_pred             H
Confidence            5

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.97  E-value=3.4e-30  Score=251.67  Aligned_cols=234  Identities=21%  Similarity=0.301  Sum_probs=178.0

Q ss_pred             CCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccce
Q 013230          132 SDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~i  205 (447)
                      .+|++++.||+|+||.||+|.+      ||+|.+.....       ......+.+|+.+++.++|        +|    |
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~-------~~~~~~~~~E~~~l~~l~h--------~~----i   65 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHE-------EGAPFTAIREASLLKDLKH--------AN----I   65 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccc-------cCCchhHHHHHHHHhhCCC--------cc----e
Confidence            4569999999999999999973      99998875421       1122346789999999998        88    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVT  280 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil  280 (447)
                      +++++++.                              .++..|+||||+. | +|.+++.     +++..++.++.||+
T Consensus        66 ~~~~~~~~------------------------------~~~~~~lv~e~~~-~-~L~~~~~~~~~~~~~~~~~~~~~ql~  113 (291)
T cd07844          66 VTLHDIIH------------------------------TKKTLTLVFEYLD-T-DLKQYMDDCGGGLSMHNVRLFLFQLL  113 (291)
T ss_pred             eeEEEEEe------------------------------cCCeEEEEEecCC-C-CHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence            99999853                              2567999999997 5 8888764     78999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDP  355 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~p  355 (447)
                      .||.|||+ .||+||||||+|||++.++                    .+||+|||+++.....     .......|++|
T Consensus       114 ~al~~lH~-~~i~H~dl~p~nil~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aP  172 (291)
T cd07844         114 RGLAYCHQ-RRVLHRDLKPQNLLISERG--------------------ELKLADFGLARAKSVPSKTYSNEVVTLWYRPP  172 (291)
T ss_pred             HHHHHHHh-CCeecccCCHHHEEEcCCC--------------------CEEECccccccccCCCCccccccccccccCCc
Confidence            99999999 9999999999999999987                    7999999998764322     11234458899


Q ss_pred             CCCCCCC-CCchHHHHHhhccCCcccccCCCCCChhH-HHHHHHHH---Hhh----------------ccCCC-------
Q 013230          356 ELFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVL-WLVYLVDM---LLL----------------KKTFD-------  407 (447)
Q Consensus       356 elf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~-~~~~~~~~---l~~----------------~~~~~-------  407 (447)
                      |.+.+.. ...+.|+|+ +|.+.++++.|..|+.... ....+...   +..                ...++       
T Consensus       173 E~~~~~~~~~~~~Dv~s-lG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (291)
T cd07844         173 DVLLGSTEYSTSLDMWG-VGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFPFYPPRPL  251 (291)
T ss_pred             HHhhcCcccCcHHHHHH-HHHHHHHHHhCCCCCCCCccHHHHHHHHHHhcCCCChhhhhhhhhccccccccccccCChhH
Confidence            9887643 456679999 8999999999988874332 11111100   000                00000       


Q ss_pred             --CCccch--HHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          408 --RSSKDE--RDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       408 --~~~~~s--~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                        ....++  .++.+|+.+||..|     |+.|+++||||
T Consensus       252 ~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~~~~f  291 (291)
T cd07844         252 INHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMKHPYF  291 (291)
T ss_pred             HHhCcCCCCchhHHHHHHHHhccCcccccCHHHHhcCCCC
Confidence              001233  88999999999999     99999999998

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.97  E-value=9.4e-31  Score=250.96  Aligned_cols=234  Identities=18%  Similarity=0.191  Sum_probs=187.7

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||.|+||.||+|++      +|+|++.....     ......+.+.+|+.++++++|        ||    |++
T Consensus         2 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-----~~~~~~~~~~~e~~~l~~l~h--------~~----i~~   64 (258)
T cd05578           2 FELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKC-----VEKGSVRNVLNERRILQELNH--------PF----LVN   64 (258)
T ss_pred             ceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhh-----cchhHHHHHHHHHHHHHhCCC--------CC----hHH
Confidence            68999999999999999973      89998875432     222345778999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++.+.                              .....|+||||+.|| +|..++.    +++..+..++.||+.||
T Consensus        65 ~~~~~~------------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~l~~~~~~~~~~~i~~~l  113 (258)
T cd05578          65 LWYSFQ------------------------------DEENMYLVVDLLLGG-DLRYHLSQKVKFSEEQVKFWICEIVLAL  113 (258)
T ss_pred             HHHhhc------------------------------CCCeEEEEEeCCCCC-CHHHHHHhcCCcCHHHHHHHHHHHHHHH
Confidence            888742                              356799999999987 9998875    88999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE----EEEecCCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI----FFLDLSQDPELFS  359 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~----i~~~~~~~pelf~  359 (447)
                      .|||+ +|++|+||||+||+++.++                    .++|+|||++......+.    .....|++||.+.
T Consensus       114 ~~lh~-~~i~h~dl~~~nil~~~~~--------------------~~~l~d~~~~~~~~~~~~~~~~~~~~~y~~PE~~~  172 (258)
T cd05578         114 EYLHS-KGIIHRDIKPDNILLDEQG--------------------HVHITDFNIATKVTPDTLTTSTSGTPGYMAPEVLC  172 (258)
T ss_pred             HHHHh-CCeeccCCCHHHeEEcCCC--------------------CEEEeecccccccCCCccccccCCChhhcCHHHHc
Confidence            99999 9999999999999999987                    799999999987654421    1223478899988


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHH--HHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CH--H
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLW--LVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SA--K  430 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~--~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa--~  430 (447)
                      +.....+.|+|+ +|.+.++++.|..|+.....  ......... ......+...+.++.++|.+||..|     ++  +
T Consensus       173 ~~~~~~~~Di~s-lG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~  250 (258)
T cd05578         173 RQGYSVAVDWWS-LGVTAYECLRGKRPYRGHSRTIRDQIRAKQE-TADVLYPATWSTEAIDAINKLLERDPQKRLGDNLK  250 (258)
T ss_pred             ccCCCCcccchh-hHHHHHHHHhCCCCCCCCCccHHHHHHHHhc-cccccCcccCcHHHHHHHHHHccCChhHcCCccHH
Confidence            777677789999 99999999999988865432  122222221 1223334567899999999999999     77  9


Q ss_pred             HHHcCCCC
Q 013230          431 EAIFDPFF  438 (447)
Q Consensus       431 elL~HPff  438 (447)
                      |+++||||
T Consensus       251 ~l~~~~~~  258 (258)
T cd05578         251 DLKNHPYF  258 (258)
T ss_pred             HHhcCCCC
Confidence            99999998

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.97  E-value=1.5e-30  Score=252.78  Aligned_cols=233  Identities=22%  Similarity=0.201  Sum_probs=181.3

Q ss_pred             eccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEEE
Q 013230          140 VGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKV  213 (447)
Q Consensus       140 LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~~  213 (447)
                      ||+|+||.||+|.      .+|+|++.....     ........+..|+.+++.++|        ||    |+++++.+.
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~-----~~~~~~~~~~~e~~~l~~l~~--------~~----i~~~~~~~~   63 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRL-----KKRKGEQMALNEKKILEKVSS--------RF----IVSLAYAFE   63 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhh-----hhhhhhHHHHHHHHHHHhCCC--------CC----EeeeeeEEe
Confidence            6999999999986      399998875321     112233456789999999988        88    999988854


Q ss_pred             EeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHHHHHHH
Q 013230          214 CQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAGLAVAE  287 (447)
Q Consensus       214 ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~gL~ylH  287 (447)
                      .                              .+..|+||||+.+| +|.+++.      +++..++.++.|++.||.|||
T Consensus        64 ~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH  112 (277)
T cd05577          64 T------------------------------KDDLCLVMTLMNGG-DLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLH  112 (277)
T ss_pred             c------------------------------CCeEEEEEecCCCC-cHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3                              46699999999987 9988764      889999999999999999999


Q ss_pred             HhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCCCCCCCCC
Q 013230          288 AAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPELFSGPKG  363 (447)
Q Consensus       288 ~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pelf~g~~~  363 (447)
                      + .|++||||||+|||++.++                    .+||+|||+++......    ......|++||.+.+...
T Consensus       113 ~-~~i~H~di~p~Nil~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~  171 (277)
T cd05577         113 Q-RRIVYRDLKPENVLLDDHG--------------------NVRISDLGLAVELKGGKKIKGRAGTPGYMAPEVLQGEVY  171 (277)
T ss_pred             h-CCcccCCCCHHHEEECCCC--------------------CEEEccCcchhhhccCCccccccCCCCcCCHHHhcCCCC
Confidence            9 9999999999999999887                    79999999987654321    122334789999887776


Q ss_pred             CchHHHHHhhccCCcccccCCCCCChhHH---HHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----------CHH
Q 013230          364 DKQFDTYRKMKKVTEDQWEGSFPKTNVLW---LVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----------SAK  430 (447)
Q Consensus       364 ~~~~di~s~lg~~~~~~~~~~~p~~~~~~---~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----------sa~  430 (447)
                      ..+.|+|+ +|.+.++++.|..|+.....   ...+..... ......+...++++++||++||+.|          ++.
T Consensus       172 ~~~~Di~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~  249 (277)
T cd05577         172 DFSVDWFA-LGCTLYEMIAGRSPFRQRKEKVEKEELKRRTL-EMAVEYPDKFSPEAKDLCEALLQKDPEKRLGCRGGSAD  249 (277)
T ss_pred             CchhhhHH-HHHHHHHHhhCCCCCCCCcccccHHHHHhccc-cccccCCccCCHHHHHHHHHHccCChhHccCCCcccHH
Confidence            77789999 89999999999988854321   111111111 1222334567999999999999998          788


Q ss_pred             HHHcCCCCCCCCC
Q 013230          431 EAIFDPFFSDLIV  443 (447)
Q Consensus       431 elL~HPff~~~~~  443 (447)
                      ++++||||.++..
T Consensus       250 ~ll~h~~~~~~~~  262 (277)
T cd05577         250 EVREHPLFKDLNW  262 (277)
T ss_pred             HHHhChhhhcCCh
Confidence            8999999987755

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.97  E-value=5.2e-30  Score=249.10  Aligned_cols=235  Identities=20%  Similarity=0.219  Sum_probs=180.7

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|+.++.||+|+||.||+|++      +|+|++.....      .....+.+.+|+.+++.++|        +|    ++
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~------~~~~~~~~~~e~~~l~~~~h--------~~----i~   63 (286)
T cd07847           2 KYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESED------DPVIKKIALREIRMLKQLKH--------PN----LV   63 (286)
T ss_pred             ceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeeccc------CccccHHHHHHHHHHHhCCC--------CC----Ee
Confidence            358999999999999999973      99998764321      12233457899999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              ...+|+||||+.+| .|..++.    +++..++.++.||+.|
T Consensus        64 ~~~~~~~~------------------------------~~~~~~v~e~~~~~-~l~~~~~~~~~~~~~~~~~~~~ql~~~  112 (286)
T cd07847          64 NLIEVFRR------------------------------KRKLHLVFEYCDHT-VLNELEKNPRGVPEHLIKKIIWQTLQA  112 (286)
T ss_pred             eeeeEEee------------------------------CCEEEEEEeccCcc-HHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence            99998543                              56699999999976 8887764    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----EEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----FFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i~~~~~~~pel  357 (447)
                      |+|||+ .|++||||||+||+++.++                    .+||+|||++......+.     .....|++||.
T Consensus       113 l~~LH~-~~i~H~dl~p~nil~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~  171 (286)
T cd07847         113 VNFCHK-HNCIHRDVKPENILITKQG--------------------QIKLCDFGFARILTGPGDDYTDYVATRWYRAPEL  171 (286)
T ss_pred             HHHHHH-CCceecCCChhhEEEcCCC--------------------cEEECccccceecCCCcccccCcccccccCCHHH
Confidence            999999 9999999999999999887                    799999999987654431     12234788998


Q ss_pred             CCCCC-CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh-------------h------ccCCCC---------
Q 013230          358 FSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL-------------L------KKTFDR---------  408 (447)
Q Consensus       358 f~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~-------------~------~~~~~~---------  408 (447)
                      +.+.. .....|+|+ +|.+.+++..|..|+........+.....             .      ....+.         
T Consensus       172 ~~~~~~~~~~~Di~s-lG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (286)
T cd07847         172 LVGDTQYGPPVDVWA-IGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPEPETREPLES  250 (286)
T ss_pred             HhCCCCcCchhhhHH-HHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcccccccccccCCCcccccCHHH
Confidence            86633 455679999 89999999999888754322111111100             0      000011         


Q ss_pred             -CccchHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          409 -SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       409 -~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                       ...++..+.+|+.+||..|     |+.|++.||||
T Consensus       251 ~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~~~f  286 (286)
T cd07847         251 KFPNISSPALSFLKGCLQMDPTERLSCEELLEHPYF  286 (286)
T ss_pred             HhccCCHHHHHHHHHHhcCCccccCCHHHHhcCCCC
Confidence             1245788999999999998     99999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.97  E-value=5.6e-30  Score=244.62  Aligned_cols=234  Identities=19%  Similarity=0.233  Sum_probs=187.8

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||+|+||.||+|..      +|+|.+.....      .......+.+|+.+++.++|        ||    |+
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~------~~~~~~~~~~e~~~l~~l~h--------~~----i~   62 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKM------NRREREEAIDEARVLAKLDS--------SY----II   62 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhC------CHHHHHHHHHHHHHHHhcCC--------CC----ee
Confidence            468899999999999999963      99998875422      23345678899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVT  280 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil  280 (447)
                      ++++.+..                              ++..|+||||+.|| +|.+++.      +++..+..++.|++
T Consensus        63 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~i~~~l~  111 (256)
T cd08529          63 RYYESFLD------------------------------KGKLNIVMEYAENG-DLHKLLKMQRGRPLPEDQVWRFFIQIL  111 (256)
T ss_pred             hheeeecc------------------------------CCEEEEEEEeCCCC-cHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            99998543                              56799999999987 9998874      78899999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----EEEecCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----FFLDLSQDP  355 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i~~~~~~~p  355 (447)
                      .||.|||+ .||+||||||+||+++.++                    .++|+|||+++.......     .....|++|
T Consensus       112 ~al~~lH~-~~i~h~dl~~~nili~~~~--------------------~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aP  170 (256)
T cd08529         112 LGLAHLHS-KKILHRDIKSLNLFLDAYD--------------------NVKIGDLGVAKLLSDNTNFANTIVGTPYYLSP  170 (256)
T ss_pred             HHHHHHHH-CCcccCCCCcceEEEeCCC--------------------CEEEcccccceeccCccchhhccccCccccCH
Confidence            99999999 9999999999999999987                    799999999987654321     122347899


Q ss_pred             CCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      |++.+...+.+.|+|+ +|.+.+++++|..|+.............. ....+.+...+.++++++.+||+.+     ++.
T Consensus       171 E~~~~~~~~~~~Di~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~  248 (256)
T cd08529         171 ELCEDKPYNEKSDVWA-LGVVLYECCTGKHPFDANNQGALILKIIR-GVFPPVSQMYSQQLAQLIDQCLTKDYRQRPDTF  248 (256)
T ss_pred             HHhcCCCCCCccchHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHc-CCCCCCccccCHHHHHHHHHHccCCcccCcCHH
Confidence            9998877677779999 99999999999999865543333333221 1122223467889999999999988     999


Q ss_pred             HHHcCCCC
Q 013230          431 EAIFDPFF  438 (447)
Q Consensus       431 elL~HPff  438 (447)
                      ++++|||+
T Consensus       249 ~ll~~~~~  256 (256)
T cd08529         249 QLLRNPSL  256 (256)
T ss_pred             HHhhCCCC
Confidence            99999995

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=3.7e-30  Score=249.22  Aligned_cols=237  Identities=18%  Similarity=0.207  Sum_probs=188.7

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||.|+||.||+|++      +|+|++....       .......+.+|+.+++.++|        +|    |+
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~-------~~~~~~~~~~e~~~l~~l~h--------~~----i~   62 (274)
T cd06609           2 LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEE-------AEDEIEDIQQEIQFLSQCRS--------PY----IT   62 (274)
T ss_pred             hhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccc-------cchHHHHHHHHHHHHHHcCC--------CC----ee
Confidence            358899999999999999973      8999887542       12234567899999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGL  283 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL  283 (447)
                      ++++.+..                              +..+|+|+||+.+| +|.+++.   +++..++.++.|++.||
T Consensus        63 ~~~~~~~~------------------------------~~~~~~v~e~~~~~-~L~~~~~~~~~~~~~~~~~~~ql~~~l  111 (274)
T cd06609          63 KYYGSFLK------------------------------GSKLWIIMEYCGGG-SCLDLLKPGKLDETYIAFILREVLLGL  111 (274)
T ss_pred             eeeEEEEE------------------------------CCeEEEEEEeeCCC-cHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence            99988543                              46699999999987 9998887   89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPELF  358 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pelf  358 (447)
                      .|||+ .+|+||||+|+||+++.++                    .++|+|||+++.....     .......|++||.+
T Consensus       112 ~~lh~-~~i~h~dl~p~ni~i~~~~--------------------~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~  170 (274)
T cd06609         112 EYLHE-EGKIHRDIKAANILLSEEG--------------------DVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVI  170 (274)
T ss_pred             HHHHh-CCcccCCCCHHHEEECCCC--------------------CEEEcccccceeecccccccccccCCccccChhhh
Confidence            99999 9999999999999999987                    7999999999876543     12223348899999


Q ss_pred             CCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCcc-chHHHHHHHHHhcccc-----CHHHH
Q 013230          359 SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSK-DERDLRSLKKRLDKYN-----SAKEA  432 (447)
Q Consensus       359 ~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~-~s~~l~dLl~~mL~~d-----sa~el  432 (447)
                      .+...+.+.|+|+ +|.+.+++++|..|+.............. ......... .+.++.+++.+||..|     |++++
T Consensus       171 ~~~~~~~~sDv~s-lG~il~~l~tg~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~p~~Rpt~~~i  248 (274)
T cd06609         171 KQSGYDEKADIWS-LGITAIELAKGEPPLSDLHPMRVLFLIPK-NNPPSLEGNKFSKPFKDFVSLCLNKDPKERPSAKEL  248 (274)
T ss_pred             ccCCCCchhhHHH-HHHHHHHHHhCCCCcccCchHHHHHHhhh-cCCCCCcccccCHHHHHHHHHHhhCChhhCcCHHHH
Confidence            8877777789999 89999999999999865332222211111 111111222 7889999999999998     99999


Q ss_pred             HcCCCCCCCC
Q 013230          433 IFDPFFSDLI  442 (447)
Q Consensus       433 L~HPff~~~~  442 (447)
                      ++||||+...
T Consensus       249 l~~~~~~~~~  258 (274)
T cd06609         249 LKHKFIKKAK  258 (274)
T ss_pred             hhChhhcCCC
Confidence            9999998753

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=2e-30  Score=272.31  Aligned_cols=240  Identities=20%  Similarity=0.257  Sum_probs=201.0

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      +++++.||.|+||.||++++      +|+|+......         ..+++..|.+|++.+.|           |||++.
T Consensus        21 ~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d---------~deEiE~eynil~~~~~-----------hpnv~~   80 (953)
T KOG0587|consen   21 FEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTED---------EEEEIELEYNMLKKYSH-----------HPNVAT   80 (953)
T ss_pred             cEEEEEEeeccceeEEEEeeeecCceeeeEeecCCcc---------ccHHHHHHHHHHHhccC-----------CCCcce
Confidence            48999999999999999984      78887664432         33677889999998876           445999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      ++++|....+                         -..+++|+|||||.|| +.-++++      +.+..+..|++.++.
T Consensus        81 fyg~~~k~~~-------------------------~~~DqLWLVMEfC~gG-SVTDLVKn~~g~rl~E~~IaYI~re~lr  134 (953)
T KOG0587|consen   81 FYGAFIKKDP-------------------------GNGDQLWLVMEFCGGG-SVTDLVKNTKGNRLKEEWIAYILREILR  134 (953)
T ss_pred             EEEEEEEecC-------------------------CCCCeEEEEeeccCCc-cHHHHHhhhcccchhhHHHHHHHHHHHH
Confidence            9999876432                         1268899999999999 8888877      899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pe  356 (447)
                      ||.|||. +.++|||||-.|||++.++                    .|||+|||++...+..     .|+.+.++|+||
T Consensus       135 gl~HLH~-nkviHRDikG~NiLLT~e~--------------------~VKLvDFGvSaQldsT~grRnT~iGtP~WMAPE  193 (953)
T KOG0587|consen  135 GLAHLHN-NKVIHRDIKGQNVLLTENA--------------------EVKLVDFGVSAQLDSTVGRRNTFIGTPYWMAPE  193 (953)
T ss_pred             HHHHHhh-cceeeecccCceEEEeccC--------------------cEEEeeeeeeeeeecccccccCcCCCcccccce
Confidence            9999999 9999999999999999998                    7999999999886543     578889999999


Q ss_pred             CCCCC-----CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc-cCCCCCccchHHHHHHHHHhcccc---
Q 013230          357 LFSGP-----KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK-KTFDRSSKDERDLRSLKKRLDKYN---  427 (447)
Q Consensus       357 lf~g~-----~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~-~~~~~~~~~s~~l~dLl~~mL~~d---  427 (447)
                      +....     .++..+|+|+ +|+..-++..|..|+-+...++.+..+.... +.+..+.+++.++.|||..||.+|   
T Consensus       194 Viac~e~~d~tyd~R~D~Ws-LGITaIEladG~PPl~DmHPmraLF~IpRNPPPkLkrp~kWs~~FndFIs~cL~Kd~e~  272 (953)
T KOG0587|consen  194 VIACDESPDATYDYRSDLWS-LGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPKLKRPKKWSKKFNDFISTCLVKDYEQ  272 (953)
T ss_pred             eeecccCCCCCcccccchhh-ccceeehhcCCCCCccCcchhhhhccCCCCCCccccchhhHHHHHHHHHHHHHhhcccc
Confidence            99532     3445569999 9999999999999998877767776665433 344457899999999999999999   


Q ss_pred             --CHHHHHcCCCCCCC
Q 013230          428 --SAKEAIFDPFFSDL  441 (447)
Q Consensus       428 --sa~elL~HPff~~~  441 (447)
                        +..++|+|||.++.
T Consensus       273 RP~~~~ll~hpFi~e~  288 (953)
T KOG0587|consen  273 RPSTEELLKHPFITEQ  288 (953)
T ss_pred             CcchhhhccCCccccc
Confidence              99999999999844

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=9.1e-31  Score=263.82  Aligned_cols=219  Identities=21%  Similarity=0.284  Sum_probs=181.5

Q ss_pred             CcceEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          134 PENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      ++++++||+|.||+||+|+     +||+|.++..         ....+.+.+|+.||++|+|        +|    ||++
T Consensus       208 l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~---------~m~~~~f~~Ea~iMk~L~H--------~~----lV~l  266 (468)
T KOG0197|consen  208 LKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEG---------SMSPEAFLREAQIMKKLRH--------EK----LVKL  266 (468)
T ss_pred             HHHHHHhcCCccceEEEEEEcCCCcccceEEecc---------ccChhHHHHHHHHHHhCcc--------cC----eEEE
Confidence            3778999999999999997     5999998743         2344678899999999999        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAG  282 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~g  282 (447)
                      +++...                              +..+||||||+..| +|.++++      +...+...++.||+.|
T Consensus       267 ~gV~~~------------------------------~~piyIVtE~m~~G-sLl~yLr~~~~~~l~~~~Ll~~a~qIaeG  315 (468)
T KOG0197|consen  267 YGVCTK------------------------------QEPIYIVTEYMPKG-SLLDYLRTREGGLLNLPQLLDFAAQIAEG  315 (468)
T ss_pred             EEEEec------------------------------CCceEEEEEecccC-cHHHHhhhcCCCccchHHHHHHHHHHHHH
Confidence            999433                              33599999999999 9999987      8899999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE------EEEecCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI------FFLDLSQDPE  356 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~------i~~~~~~~pe  356 (447)
                      ++||++ +++|||||-..||||+.+.                    .+||+||||||...++..      -+---+++||
T Consensus       316 M~YLes-~~~IHRDLAARNiLV~~~~--------------------~vKIsDFGLAr~~~d~~Y~~~~~~kfPIkWtAPE  374 (468)
T KOG0197|consen  316 MAYLES-KNYIHRDLAARNILVDEDL--------------------VVKISDFGLARLIGDDEYTASEGGKFPIKWTAPE  374 (468)
T ss_pred             HHHHHh-CCccchhhhhhheeeccCc--------------------eEEEcccccccccCCCceeecCCCCCCceecCHH
Confidence            999999 9999999999999999997                    899999999996554422      1112278999


Q ss_pred             CCCCCCCCchHHHHHhhccCCcccccCC-CCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWEGS-FPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~~~-~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d  427 (447)
                      .|.-.....++|+|+ +|+.+.++.+-. .|+......+ ..+.+-...++|+|...++++-++++.|...+
T Consensus       375 a~~~~~FS~kSDVWS-FGVlL~E~fT~G~~py~~msn~e-v~~~le~GyRlp~P~~CP~~vY~lM~~CW~~~  444 (468)
T KOG0197|consen  375 ALNYGKFSSKSDVWS-FGVLLWELFTYGRVPYPGMSNEE-VLELLERGYRLPRPEGCPDEVYELMKSCWHED  444 (468)
T ss_pred             HHhhCCcccccceee-hhhhHHHHhccCCCCCCCCCHHH-HHHHHhccCcCCCCCCCCHHHHHHHHHHhhCC
Confidence            998878888889999 999998887765 5554433333 33344445688899999999999999999988

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.97  E-value=6.2e-30  Score=249.01  Aligned_cols=237  Identities=19%  Similarity=0.245  Sum_probs=180.5

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCcccce
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTTF  205 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~i  205 (447)
                      +|++++.||+|+||.||+|++      +|+|++....         .....+.+|+.+++.+ +|        +|    |
T Consensus        19 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~---------~~~~~~~~e~~~l~~l~~h--------~~----i   77 (286)
T cd06638          19 TWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH---------DIDEEIEAEYNILKALSDH--------PN----V   77 (286)
T ss_pred             ceeeeeeeccCCCcEEEEEEECCCCceeEEEeecccc---------chHHHHHHHHHHHHHHhcC--------CC----e
Confidence            459999999999999999863      8899765321         1225577899999998 57        77    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLV  277 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~  277 (447)
                      +++++++....                         ....+..|+||||+.|| +|.+++.        +++..++.++.
T Consensus        78 ~~~~~~~~~~~-------------------------~~~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~~  131 (286)
T cd06638          78 VKFYGMYYKKD-------------------------VKNGDQLWLVLELCNGG-SVTDLVKGFLKRGERMEEPIIAYILH  131 (286)
T ss_pred             eeeeeeeeecc-------------------------cCCCCeEEEEEeecCCC-CHHHHHHHhhccCccccHHHHHHHHH
Confidence            99999864321                         11245699999999988 9987652        78899999999


Q ss_pred             HHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecC
Q 013230          278 QVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLS  352 (447)
Q Consensus       278 Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~  352 (447)
                      |++.||.|||+ .+|+||||||+||+++.++                    .+||+|||+++......     ......|
T Consensus       132 ~i~~~l~~lH~-~~i~H~dlkp~nili~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~y  190 (286)
T cd06638         132 EALMGLQHLHV-NKTIHRDVKGNNILLTTEG--------------------GVKLVDFGVSAQLTSTRLRRNTSVGTPFW  190 (286)
T ss_pred             HHHHHHHHHHh-CCccccCCCHHhEEECCCC--------------------CEEEccCCceeecccCCCccccccCCCcc
Confidence            99999999999 9999999999999999987                    79999999998754321     2233448


Q ss_pred             CCCCCCCC-----CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh-ccCCCCCccchHHHHHHHHHhccc
Q 013230          353 QDPELFSG-----PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL-KKTFDRSSKDERDLRSLKKRLDKY  426 (447)
Q Consensus       353 ~~pelf~g-----~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~-~~~~~~~~~~s~~l~dLl~~mL~~  426 (447)
                      ++||++.+     .....+.|+|+ +|.+.++++++..|+........+...... ......+...+.++++||.+||..
T Consensus       191 ~aPE~~~~~~~~~~~~~~~~Dv~s-lGvi~~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  269 (286)
T cd06638         191 MAPEVIACEQQLDSTYDARCDVWS-LGITAIELGDGDPPLADLHPMRALFKIPRNPPPTLHQPELWSNEFNDFIRKCLTK  269 (286)
T ss_pred             cChhhhchhhhccccccchhhhhh-HHHHHHHHhcCCCCCCCCchhHHHhhccccCCCcccCCCCcCHHHHHHHHHHccC
Confidence            89998853     23455679999 899999999999888654332222222111 111222344678999999999999


Q ss_pred             c-----CHHHHHcCCCC
Q 013230          427 N-----SAKEAIFDPFF  438 (447)
Q Consensus       427 d-----sa~elL~HPff  438 (447)
                      |     |+.|+++||||
T Consensus       270 ~p~~Rps~~ell~~~~~  286 (286)
T cd06638         270 DYEKRPTVSDLLQHVFI  286 (286)
T ss_pred             CcccCCCHHHHhhcccC
Confidence            8     99999999997

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.97  E-value=8.3e-30  Score=251.02  Aligned_cols=229  Identities=20%  Similarity=0.193  Sum_probs=173.4

Q ss_pred             CCcceEEeccccceEEEEec----------------------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccc
Q 013230          133 DPENIVKVGEGTFGEAFLAG----------------------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNH  190 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~----------------------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h  190 (447)
                      .|++.++||+|+||.||+|.                      .||+|++....       .......+.+|+.++++++|
T Consensus         6 ~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~-------~~~~~~~~~~E~~~l~~l~h   78 (304)
T cd05096           6 HLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDA-------NKNARNDFLKEVKILSRLKD   78 (304)
T ss_pred             hCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCC-------CHHHHHHHHHHHHHHhhcCC
Confidence            35899999999999999985                      38999876431       12234568899999999988


Q ss_pred             cccCCCCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----
Q 013230          191 LRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----  266 (447)
Q Consensus       191 ~~~~~~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----  266 (447)
                              ||    |+++++++..                              .+..|+||||+.+| +|.+++.    
T Consensus        79 --------~n----iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~  115 (304)
T cd05096          79 --------PN----IIRLLGVCVD------------------------------EDPLCMITEYMENG-DLNQFLSSHHL  115 (304)
T ss_pred             --------CC----eeEEEEEEec------------------------------CCceEEEEecCCCC-cHHHHHHhccc
Confidence                    88    9999998643                              45689999999988 9988763    


Q ss_pred             -------------------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCC
Q 013230          267 -------------------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFG  327 (447)
Q Consensus       267 -------------------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~  327 (447)
                                         +++..+..++.||+.||+|||+ +||+||||||+|||++.++                   
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~-~~ivH~dlkp~Nill~~~~-------------------  175 (304)
T cd05096         116 DDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSS-LNFVHRDLATRNCLVGENL-------------------  175 (304)
T ss_pred             cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH-CCccccCcchhheEEcCCc-------------------
Confidence                               3556788999999999999999 9999999999999999887                   


Q ss_pred             CcEEEeeccceeecCCCCE-------EEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc--CCCCCChhHHHHHHHH
Q 013230          328 LSVTIIDFTLSRINTGEDI-------FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE--GSFPKTNVLWLVYLVD  398 (447)
Q Consensus       328 ~~vkL~DFGla~~~~~~g~-------i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~--~~~p~~~~~~~~~~~~  398 (447)
                       .+||+|||+++.......       .....|++||.+.+...+.+.|+|+ +|.+.++++.  +..|+...........
T Consensus       176 -~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s-lG~~l~el~~~~~~~p~~~~~~~~~~~~  253 (304)
T cd05096         176 -TIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWA-FGVTLWEILMLCKEQPYGELTDEQVIEN  253 (304)
T ss_pred             -cEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHH-HHHHHHHHHHccCCCCCCcCCHHHHHHH
Confidence             799999999986543221       1123478999887767777789999 8999988765  4466654322222111


Q ss_pred             ---HHhhc---cCCCCCccchHHHHHHHHHhcccc-----CHHHHH
Q 013230          399 ---MLLLK---KTFDRSSKDERDLRSLKKRLDKYN-----SAKEAI  433 (447)
Q Consensus       399 ---~l~~~---~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL  433 (447)
                         .+...   .....+...+..+.+|+.+||..|     |+.|+.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~  299 (304)
T cd05096         254 AGEFFRDQGRQVYLFRPPPCPQGLYELMLQCWSRDCRERPSFSDIH  299 (304)
T ss_pred             HHHHhhhccccccccCCCCCCHHHHHHHHHHccCCchhCcCHHHHH
Confidence               11111   111223456789999999999998     998884

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.97  E-value=1.2e-29  Score=248.07  Aligned_cols=233  Identities=21%  Similarity=0.274  Sum_probs=175.8

Q ss_pred             CCcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|.+++.||+|+||.||+|.      .+|+|++....       .......+.+|+.+++.++|        +|    |+
T Consensus         6 ~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~-------~~~~~~~~~~e~~~l~~l~h--------~n----i~   66 (291)
T cd07870           6 SYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKT-------EEGVPFTAIREASLLKGLKH--------AN----IV   66 (291)
T ss_pred             eeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccC-------cCCCcHHHHHHHHHHHhcCC--------CC----Ee
Confidence            46999999999999999986      39999886542       12223456789999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      ++++++..                              ++..|+||||+. | +|..++.     +++..++.++.||+.
T Consensus        67 ~~~~~~~~------------------------------~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~~~~~~~~~qi~~  114 (291)
T cd07870          67 LLHDIIHT------------------------------KETLTFVFEYMH-T-DLAQYMIQHPGGLHPYNVRLFMFQLLR  114 (291)
T ss_pred             EEEEEEec------------------------------CCeEEEEEeccc-C-CHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            99998542                              456899999996 5 6655543     678899999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pe  356 (447)
                      ||+|||+ .||+||||||+|||++.++                    .+||+|||+++.....     .......|++||
T Consensus       115 ~L~~lH~-~~i~H~dlkp~Nil~~~~~--------------------~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE  173 (291)
T cd07870         115 GLAYIHG-QHILHRDLKPQNLLISYLG--------------------ELKLADFGLARAKSIPSQTYSSEVVTLWYRPPD  173 (291)
T ss_pred             HHHHHHh-CCcccCCCChHHEEEcCCC--------------------cEEEeccccccccCCCCCCCCCccccccccCCc
Confidence            9999999 9999999999999999887                    7999999999764322     223345588999


Q ss_pred             CCCCCC-CCchHHHHHhhccCCcccccCCCCCChhHH-HHHHHHHHh--------------hc-----cCC----CC---
Q 013230          357 LFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLW-LVYLVDMLL--------------LK-----KTF----DR---  408 (447)
Q Consensus       357 lf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~-~~~~~~~l~--------------~~-----~~~----~~---  408 (447)
                      .+.+.. .....|+|+ +|.+.+++++|..|+....- ...+.+...              ..     ..+    +.   
T Consensus       174 ~~~~~~~~~~~~Dv~s-lG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (291)
T cd07870         174 VLLGATDYSSALDIWG-AGCIFIEMLQGQPAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFLPCKPQQLR  252 (291)
T ss_pred             eeecCCCCCcHHHHHH-HHHHHHHHHhCCCCCCCchhHHHHHHHHHHHcCCCChhhhhhhhhcccccchhccccCCcchh
Confidence            987643 455679999 89999999999988753211 111111100              00     000    00   


Q ss_pred             ----CccchHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          409 ----SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       409 ----~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                          .-..+.++.+|+++||+.|     |++|++.||||
T Consensus       253 ~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~h~~~  291 (291)
T cd07870         253 VVWKRLSRPPKAEDLASQMLMMFPKDRISAQDALLHPYF  291 (291)
T ss_pred             hhccccCCChHHHHHHHHHhCcCcccCcCHHHHhcCCCC
Confidence                0113678999999999999     99999999998

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.97  E-value=2.2e-30  Score=254.30  Aligned_cols=239  Identities=21%  Similarity=0.283  Sum_probs=187.9

Q ss_pred             cceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      .....||+|+||.||++.+      +|+|.+....        ....+.+.+|+.+++.++|        +|    |+++
T Consensus        25 ~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~--------~~~~~~~~~e~~~l~~l~h--------~~----ii~~   84 (292)
T cd06658          25 DSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRK--------QQRRELLFNEVVIMRDYHH--------EN----VVDM   84 (292)
T ss_pred             hhhhcccCCCCeEEEEEEECCCCCEEEEEEEecch--------HHHHHHHHHHHHHHHhCCC--------Cc----HHHH
Confidence            4457899999999999973      8999876431        2234668899999999988        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLAV  285 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~y  285 (447)
                      ++.+..                              .+..|+||||+.+| +|.+++.   +++..++.++.||+.||+|
T Consensus        85 ~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~l~~~~~~~~~~qi~~~l~~  133 (292)
T cd06658          85 YNSYLV------------------------------GDELWVVMEFLEGG-ALTDIVTHTRMNEEQIATVCLSVLRALSY  133 (292)
T ss_pred             HHheec------------------------------CCeEEEEEeCCCCC-cHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            988543                              46689999999987 9988875   8999999999999999999


Q ss_pred             HHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCCCCC
Q 013230          286 AEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPELFSG  360 (447)
Q Consensus       286 lH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pelf~g  360 (447)
                      ||+ .||+||||||+||+++.++                    .++|+|||++......     .......|++||.+.+
T Consensus       134 LH~-~~ivH~dlkp~Nill~~~~--------------------~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  192 (292)
T cd06658         134 LHN-QGVIHRDIKSDSILLTSDG--------------------RIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISR  192 (292)
T ss_pred             HHH-CCEeecCCCHHHEEEcCCC--------------------CEEEccCcchhhcccccccCceeecCccccCHHHHcc
Confidence            999 9999999999999999887                    7999999998754322     1122334889999988


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh-hccCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL-LKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~-~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      ...+.+.|+|+ +|.+.++++.|..|+.............. ....++.....+..+++|+.+||..|     |++|+++
T Consensus       193 ~~~~~~~Dv~s-lGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~  271 (292)
T cd06658         193 LPYGTEVDIWS-LGIMVIEMIDGEPPYFNEPPLQAMRRIRDNLPPRVKDSHKVSSVLRGFLDLMLVREPSQRATAQELLQ  271 (292)
T ss_pred             CCCCchhhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCccccccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence            77777789999 89999999999999865432222221110 01222333357889999999999999     9999999


Q ss_pred             CCCCCCCCCCCC
Q 013230          435 DPFFSDLIVDRP  446 (447)
Q Consensus       435 HPff~~~~~~~~  446 (447)
                      ||||.....++.
T Consensus       272 ~~~~~~~~~~~~  283 (292)
T cd06658         272 HPFLKLAGPPSC  283 (292)
T ss_pred             ChhhhccCCccc
Confidence            999998766653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.97  E-value=4.3e-30  Score=249.49  Aligned_cols=237  Identities=18%  Similarity=0.210  Sum_probs=176.4

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHH-HHhccccccCCCCCCCcccce
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVL-SWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~i-l~~L~h~~~~~~~~~n~~~~i  205 (447)
                      +|++++.||+|+||.||+|++      ||+|++.....       ......+..|+.+ ++.++|        ||    |
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~-------~~~~~~~~~e~~~~~~~~~~--------~~----i   62 (283)
T cd06617           2 DLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVN-------SQEQKRLLMDLDISMRSVDC--------PY----T   62 (283)
T ss_pred             CceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCC-------cHHHHHHHHHHHHHHHHcCC--------CC----e
Confidence            569999999999999999973      99998875421       1112345566665 555555        66    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLV  277 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~  277 (447)
                      +++++++..                              ++.+|+||||+. | +|.+++.        +++..++.++.
T Consensus        63 v~~~~~~~~------------------------------~~~~~lv~e~~~-~-~l~~~l~~~~~~~~~~~~~~~~~~~~  110 (283)
T cd06617          63 VTFYGALFR------------------------------EGDVWICMEVMD-T-SLDKFYKKVYDKGLTIPEDILGKIAV  110 (283)
T ss_pred             eeeeEEEec------------------------------CCcEEEEhhhhc-c-cHHHHHHHhccCCCCCCHHHHHHHHH
Confidence            999998543                              566999999997 5 6666543        78999999999


Q ss_pred             HHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCC
Q 013230          278 QVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQ  353 (447)
Q Consensus       278 Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~  353 (447)
                      ||+.||+|||+..+++||||||+|||++.++                    .+||+|||+++......    ......|+
T Consensus       111 qi~~~l~~lH~~~~i~h~dlkp~nil~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~y~  170 (283)
T cd06617         111 SIVKALEYLHSKLSVIHRDVKPSNVLINRNG--------------------QVKLCDFGISGYLVDSVAKTIDAGCKPYM  170 (283)
T ss_pred             HHHHHHHHHhhcCCeecCCCCHHHEEECCCC--------------------CEEEeecccccccccccccccccCCcccc
Confidence            9999999999823999999999999999887                    79999999998654321    11223478


Q ss_pred             CCCCCCCCC----CCchHHHHHhhccCCcccccCCCCCChhH-HHHHHHHHHhh-ccCCCCCccchHHHHHHHHHhcccc
Q 013230          354 DPELFSGPK----GDKQFDTYRKMKKVTEDQWEGSFPKTNVL-WLVYLVDMLLL-KKTFDRSSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       354 ~pelf~g~~----~~~~~di~s~lg~~~~~~~~~~~p~~~~~-~~~~~~~~l~~-~~~~~~~~~~s~~l~dLl~~mL~~d  427 (447)
                      +||.+.+..    .+.+.|+|+ +|.+.++++.+..|+.+.. ....+...... ...++ ...++.++++||.+||..+
T Consensus       171 aPE~~~~~~~~~~~~~~~Di~s-lG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~li~~~l~~~  248 (283)
T cd06617         171 APERINPELNQKGYDVKSDVWS-LGITMIELATGRFPYDSWKTPFQQLKQVVEEPSPQLP-AEKFSPEFQDFVNKCLKKN  248 (283)
T ss_pred             ChhhcCCcccccccCccccchh-hHHHHHHHHhCCCCCCccccCHHHHHHHHhcCCCCCC-ccccCHHHHHHHHHHccCC
Confidence            999887632    245569999 9999999999999986421 11222222211 11122 2347889999999999999


Q ss_pred             -----CHHHHHcCCCCCCCC
Q 013230          428 -----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 -----sa~elL~HPff~~~~  442 (447)
                           |++++++||||....
T Consensus       249 p~~Rp~~~~il~~~~~~~~~  268 (283)
T cd06617         249 YKERPNYPELLQHPFFELHL  268 (283)
T ss_pred             hhhCcCHHHHhcCchhhhcc
Confidence                 999999999998653

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.97  E-value=8.1e-30  Score=243.97  Aligned_cols=233  Identities=23%  Similarity=0.258  Sum_probs=187.1

Q ss_pred             CcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+++      .+|+|.+.....      .......+.+|+.++++++|        +|    |++
T Consensus         2 y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~------~~~~~~~~~~e~~~l~~l~~--------~~----i~~   63 (256)
T cd08218           2 YVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKM------SPKEREESRKEVAVLSNMKH--------PN----IVQ   63 (256)
T ss_pred             ceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhC------ChHHHHHHHHHHHHHHhCCC--------CC----eee
Confidence            5899999999999999986      399998875421      12233578899999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +++++.                              ..+..|+||||+.+| +|.+++.      +++..+..++.|++.
T Consensus        64 ~~~~~~------------------------------~~~~~~lv~e~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~l~~  112 (256)
T cd08218          64 YQESFE------------------------------ENGNLYIVMDYCEGG-DLYKKINAQRGVLFPEDQILDWFVQICL  112 (256)
T ss_pred             eEeeec------------------------------CCCeEEEEEecCCCC-cHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence            999853                              256799999999987 8888764      688999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pe  356 (447)
                      ||+|||+ +|++|+||+|+|||++.++                    .++|+|||++.......     +.....|++||
T Consensus       113 ~l~~lh~-~~i~h~~l~~~nil~~~~~--------------------~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe  171 (256)
T cd08218         113 ALKHVHD-RKILHRDIKSQNIFLTKDG--------------------TIKLGDFGIARVLNSTVELARTCIGTPYYLSPE  171 (256)
T ss_pred             HHHHHHh-CCEecCCCCHHHEEEcCCC--------------------CEEEeeccceeecCcchhhhhhccCCccccCHH
Confidence            9999999 9999999999999999887                    79999999998654431     12223478999


Q ss_pred             CCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHH
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKE  431 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~e  431 (447)
                      .+.+.....+.|+|+ +|.+.++++++..|+............+. ....+.+...+.++.++|.+||+.+     ++.+
T Consensus       172 ~~~~~~~~~~~Dv~s-lG~i~~~l~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~  249 (256)
T cd08218         172 ICENRPYNNKSDIWA-LGCVLYEMCTLKHAFEAGNMKNLVLKIIR-GSYPPVSSHYSYDLRNLVSQLFKRNPRDRPSVNS  249 (256)
T ss_pred             HhCCCCCCCccchhH-HHHHHHHHHcCCCCccCCCHHHHHHHHhc-CCCCCCcccCCHHHHHHHHHHhhCChhhCcCHHH
Confidence            888766666779999 99999999999988865544333333332 2222334567899999999999998     9999


Q ss_pred             HHcCCCC
Q 013230          432 AIFDPFF  438 (447)
Q Consensus       432 lL~HPff  438 (447)
                      +++||||
T Consensus       250 vl~~~~~  256 (256)
T cd08218         250 ILEKNFI  256 (256)
T ss_pred             HhhCcCC
Confidence            9999998

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.97  E-value=7.5e-30  Score=245.01  Aligned_cols=234  Identities=23%  Similarity=0.247  Sum_probs=185.4

Q ss_pred             CCcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||.|+||.||+|.      .+|+|++.....       ......+.+|+.+++.++|        +|    |+
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-------~~~~~~~~~e~~~l~~l~~--------~~----i~   62 (267)
T cd06610           2 DYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKC-------QTSVDELRKEVQAMSQCNH--------PN----VV   62 (267)
T ss_pred             cceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCc-------chHHHHHHHHHHHHHhcCC--------CC----EE
Confidence            56999999999999999997      388998764421       1244678999999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------CCHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------LNINEARSLLVQV  279 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------l~~~~~~~i~~Qi  279 (447)
                      ++++.+..                              .+..|++||++.+| +|.+++.       +++..++.++.|+
T Consensus        63 ~~~~~~~~------------------------------~~~~~iv~e~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~ql  111 (267)
T cd06610          63 KYYTSFVV------------------------------GDELWLVMPYLSGG-SLLDIMKSSYPRGGLDEAIIATVLKEV  111 (267)
T ss_pred             EEEEEEee------------------------------CCEEEEEEeccCCC-cHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence            99887543                              56799999999987 8888874       6889999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE---------EEEe
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI---------FFLD  350 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~---------i~~~  350 (447)
                      +.||+|||+ .||+||||||+||+++.++                    .++|+|||++........         ....
T Consensus       112 ~~al~~lh~-~~i~h~~l~p~ni~~~~~~--------------------~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~  170 (267)
T cd06610         112 LKGLEYLHS-NGQIHRDIKAGNILLGEDG--------------------SVKIADFGVSASLADGGDRTRKVRKTFVGTP  170 (267)
T ss_pred             HHHHHHHHh-CCeecCCCCHHhEEEcCCC--------------------CEEEcccchHHHhccCccccccccccccCCh
Confidence            999999999 9999999999999999887                    799999999876554321         2234


Q ss_pred             cCCCCCCCCCC-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc-cCCCCC---ccchHHHHHHHHHhcc
Q 013230          351 LSQDPELFSGP-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK-KTFDRS---SKDERDLRSLKKRLDK  425 (447)
Q Consensus       351 ~~~~pelf~g~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~-~~~~~~---~~~s~~l~dLl~~mL~  425 (447)
                      .|++|+.+... ....+.|+|+ +|.+.+++++|..|+.+........+.+... ..++..   ..+++++++|+.+||.
T Consensus       171 ~y~~Pe~~~~~~~~~~~~Dv~s-lG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  249 (267)
T cd06610         171 CWMAPEVMEQVHGYDFKADIWS-FGITAIELATGAAPYSKYPPMKVLMLTLQNDPPSLETGADYKKYSKSFRKMISLCLQ  249 (267)
T ss_pred             hhcChHHHccccCcCcccchHh-HhHHHHHHHhCCCCccccChhhhHHHHhcCCCCCcCCccccccccHHHHHHHHHHcC
Confidence            47888887654 4555669999 8999999999999987654433333333211 112221   2568899999999999


Q ss_pred             cc-----CHHHHHcCCCC
Q 013230          426 YN-----SAKEAIFDPFF  438 (447)
Q Consensus       426 ~d-----sa~elL~HPff  438 (447)
                      .|     |++++++||||
T Consensus       250 ~~p~~Rp~~~~ll~~p~~  267 (267)
T cd06610         250 KDPSKRPTAEELLKHKFF  267 (267)
T ss_pred             CChhhCcCHHHHhhCCCC
Confidence            99     99999999998

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1e-29  Score=245.03  Aligned_cols=240  Identities=20%  Similarity=0.205  Sum_probs=188.1

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||+|+||.||+|.+      +|+|++.....   ..........+.+|+.+++.++|        +|    |+
T Consensus         3 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~~~~~~ei~~l~~l~h--------~~----i~   67 (264)
T cd06653           3 NWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPD---SQETSKEVNALECEIQLLKNLRH--------DR----IV   67 (264)
T ss_pred             ceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcc---cchhhHHHHHHHHHHHHHHHcCC--------CC----cc
Confidence            468999999999999999973      99998764321   01122344678899999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++...                            ....++++|||+.+| +|.+++.    +++..++.++.||+.|
T Consensus        68 ~~~~~~~~~----------------------------~~~~~~~v~e~~~~~-~L~~~~~~~~~l~~~~~~~~~~~i~~a  118 (264)
T cd06653          68 QYYGCLRDP----------------------------EEKKLSIFVEYMPGG-SIKDQLKAYGALTENVTRRYTRQILQG  118 (264)
T ss_pred             eEEEEEEcC----------------------------CCCEEEEEEEeCCCC-cHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            999885321                            134589999999977 8988765    7899999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--------CEEEEecCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--------DIFFLDLSQD  354 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--------g~i~~~~~~~  354 (447)
                      |.|||+ .|++||||||+||+++.++                    .++|+|||+++.....        +......|++
T Consensus       119 l~~LH~-~~i~H~dl~p~ni~i~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~a  177 (264)
T cd06653         119 VSYLHS-NMIVHRDIKGANILRDSAG--------------------NVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMS  177 (264)
T ss_pred             HHHHHh-CCEecCCCCHHHEEEcCCC--------------------CEEECccccccccccccccCccccccCCcccccC
Confidence            999999 9999999999999999886                    7999999999864321        1112234789


Q ss_pred             CCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----CHH
Q 013230          355 PELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----SAK  430 (447)
Q Consensus       355 pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----sa~  430 (447)
                      ||.+.+...+...|+|+ +|.+.++++.|..|+..........+..........+..+++++.+||++||+..    |+.
T Consensus       178 PE~~~~~~~~~~~Di~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~r~~~~  256 (264)
T cd06653         178 PEVISGEGYGRKADVWS-VACTVVEMLTEKPPWAEYEAMAAIFKIATQPTKPMLPDGVSDACRDFLKQIFVEEKRRPTAE  256 (264)
T ss_pred             HhhhcCCCCCccccHHH-HHHHHHHHHhCCCCCCccCHHHHHHHHHcCCCCCCCCcccCHHHHHHHHHHhcCcccCccHH
Confidence            99998876667779999 8999999999999987654333333333222223335678999999999999877    999


Q ss_pred             HHHcCCCC
Q 013230          431 EAIFDPFF  438 (447)
Q Consensus       431 elL~HPff  438 (447)
                      +++.|||.
T Consensus       257 ~~~~~~~~  264 (264)
T cd06653         257 FLLRHPFV  264 (264)
T ss_pred             HHhcCCCC
Confidence            99999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>PHA02988 hypothetical protein; Provisional

Probab=99.97  E-value=6.8e-30  Score=249.87  Aligned_cols=233  Identities=10%  Similarity=0.066  Sum_probs=183.2

Q ss_pred             eEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEE
Q 013230          137 IVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIK  212 (447)
Q Consensus       137 ~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~  212 (447)
                      ...||+|++|.||+|+    .||+|.+.....     ......+.+.+|+.+|++++|        ||    |+++++++
T Consensus        25 ~~~i~~g~~~~v~~~~~~~~~vavK~~~~~~~-----~~~~~~~~~~~E~~~l~~l~h--------~n----Iv~~~g~~   87 (283)
T PHA02988         25 SVLIKENDQNSIYKGIFNNKEVIIRTFKKFHK-----GHKVLIDITENEIKNLRRIDS--------NN----ILKIYGFI   87 (283)
T ss_pred             CeEEeeCCceEEEEEEECCEEEEEEecccccc-----ccHHHHHHHHHHHHHHHhcCC--------CC----EEEEeeeE
Confidence            3679999999999998    499998864321     122234667899999999998        88    99999986


Q ss_pred             EEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHHHH
Q 013230          213 VCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVAEA  288 (447)
Q Consensus       213 ~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~ylH~  288 (447)
                      ....                          .....+++||||+.+| +|.+++.    +++.....++.|++.||.|||+
T Consensus        88 ~~~~--------------------------~~~~~~~lv~Ey~~~g-~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lH~  140 (283)
T PHA02988         88 IDIV--------------------------DDLPRLSLILEYCTRG-YLREVLDKEKDLSFKTKLDMAIDCCKGLYNLYK  140 (283)
T ss_pred             Eecc--------------------------cCCCceEEEEEeCCCC-cHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHh
Confidence            4300                          1124589999999998 9999986    8889999999999999999997


Q ss_pred             hCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC--EEEEecCCCCCCCCC--CCCC
Q 013230          289 AYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED--IFFLDLSQDPELFSG--PKGD  364 (447)
Q Consensus       289 ~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g--~i~~~~~~~pelf~g--~~~~  364 (447)
                      ..+++||||||+|||++.++                    .+||+|||+++......  .+....|++||++.+  ...+
T Consensus       141 ~~~~~Hrdlkp~nill~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  200 (283)
T PHA02988        141 YTNKPYKNLTSVSFLVTENY--------------------KLKIICHGLEKILSSPPFKNVNFMVYFSYKMLNDIFSEYT  200 (283)
T ss_pred             cCCCCCCcCChhhEEECCCC--------------------cEEEcccchHhhhccccccccCcccccCHHHhhhcccccc
Confidence            35999999999999999987                    79999999998644321  122344789999876  4566


Q ss_pred             chHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          365 KQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       365 ~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      .+.|||+ +|++.+++++|..||.+................++.+...++++++|+.+||+.|     |++|+++
T Consensus       201 ~k~Di~S-lGvil~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ell~  274 (283)
T PHA02988        201 IKDDIYS-LGVVLWEIFTGKIPFENLTTKEIYDLIINKNNSLKLPLDCPLEIKCIVEACTSHDSIKRPNIKEILY  274 (283)
T ss_pred             chhhhhH-HHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCCCCCCcCcHHHHHHHHHHhcCCcccCcCHHHHHH
Confidence            7779999 9999999999999997665444433333333444445568899999999999999     9999875

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.97  E-value=2.1e-30  Score=249.02  Aligned_cols=238  Identities=17%  Similarity=0.170  Sum_probs=187.7

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+..+.||+|+||.||+|.+      +|+|.+....       .......+.+|+.+++.++|        ||    |+
T Consensus         2 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~-------~~~~~~~~~~e~~~l~~~~~--------~~----i~   62 (265)
T cd06605           2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEI-------NEAIQKQILRELDILHKCNS--------PY----IV   62 (265)
T ss_pred             cchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEeccc-------ChHHHHHHHHHHHHHHHCCC--------Cc----hh
Confidence            468889999999999999974      8999887542       12344678899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      ++++.+..                              ++.+|++|||+.++ +|.+++.     +++..+..++.|++.
T Consensus        63 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~l~~  111 (265)
T cd06605          63 GFYGAFYN------------------------------NGDISICMEYMDGG-SLDKILKEVQGRIPERILGKIAVAVLK  111 (265)
T ss_pred             hhheeeec------------------------------CCEEEEEEEecCCC-cHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence            99988543                              56799999999977 9998885     789999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC---EEEEecCCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED---IFFLDLSQDPELF  358 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g---~i~~~~~~~pelf  358 (447)
                      ||+|||+..|++||||||+||+++.++                    .++|+|||.+.......   ......|++||.+
T Consensus       112 ~l~~lH~~~~i~H~dl~~~ni~~~~~~--------------------~~~l~d~g~~~~~~~~~~~~~~~~~~y~~PE~~  171 (265)
T cd06605         112 GLTYLHEKHKIIHRDVKPSNILVNSRG--------------------QIKLCDFGVSGQLVNSLAKTFVGTSSYMAPERI  171 (265)
T ss_pred             HHHHHcCCCCeecCCCCHHHEEECCCC--------------------CEEEeecccchhhHHHHhhcccCChhccCHHHH
Confidence            999999768999999999999999987                    79999999987543221   1122347899999


Q ss_pred             CCCCCCchHHHHHhhccCCcccccCCCCCChh-----HHHHHHHHHHhhccCCCCCcc-chHHHHHHHHHhcccc-----
Q 013230          359 SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV-----LWLVYLVDMLLLKKTFDRSSK-DERDLRSLKKRLDKYN-----  427 (447)
Q Consensus       359 ~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~-----~~~~~~~~~l~~~~~~~~~~~-~s~~l~dLl~~mL~~d-----  427 (447)
                      .+.....+.|+|+ +|.+.++++.+..|+...     .........+ .......+.. ++.++++||.+||..|     
T Consensus       172 ~~~~~~~~~Dv~s-lG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  249 (265)
T cd06605         172 QGNDYSVKSDIWS-LGLSLIELATGRFPYPPENDPPDGIFELLQYIV-NEPPPRLPSGKFSPDFQDFVNLCLIKDPRERP  249 (265)
T ss_pred             cCCCCCchhhHHH-HHHHHHHHHhCCCCCCccccccccHHHHHHHHh-cCCCCCCChhhcCHHHHHHHHHHcCCCchhCc
Confidence            8877777789999 999999999999887543     1122222222 1111112222 7889999999999999     


Q ss_pred             CHHHHHcCCCCCCCC
Q 013230          428 SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 sa~elL~HPff~~~~  442 (447)
                      |+.+++.||||+...
T Consensus       250 t~~~ll~~~~~~~~~  264 (265)
T cd06605         250 SYKELLEHPFIKKYE  264 (265)
T ss_pred             CHHHHhhCchhhccc
Confidence            999999999998764

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.97  E-value=6e-30  Score=247.29  Aligned_cols=241  Identities=20%  Similarity=0.216  Sum_probs=182.3

Q ss_pred             CCcceEEeccccceEEEEec------eeEEEEEecCCCcccc--cccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          133 DPENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVN--GEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~--~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      .|...+.||.|+||.||+|.      .+|+|.+.........  .......+.+.+|+.+++.++|        +|    
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h--------~~----   69 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDH--------LN----   69 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCC--------CC----
Confidence            35788999999999999996      3899987653221000  0111123567889999999988        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVT  280 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil  280 (447)
                      ++++++++..                              .+..++||||+.+| +|.+++.    +++..++.++.||+
T Consensus        70 i~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~l~~~~~~~~~~qi~  118 (272)
T cd06629          70 IVQYLGFETT------------------------------EEYLSIFLEYVPGG-SIGSCLRTYGRFEEQLVRFFTEQVL  118 (272)
T ss_pred             cceEEEEecc------------------------------CCceEEEEecCCCC-cHHHHHhhccCCCHHHHHHHHHHHH
Confidence            9999988432                              56799999999988 9998875    89999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-------EEEEecCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-------IFFLDLSQ  353 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-------~i~~~~~~  353 (447)
                      .||.|||+ .|++||||||+||+++.++                    .++|+|||+++......       ......|+
T Consensus       119 ~~l~~lH~-~~i~H~dl~~~nil~~~~~--------------------~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~  177 (272)
T cd06629         119 EGLAYLHS-KGILHRDLKADNLLVDADG--------------------ICKISDFGISKKSDDIYDNDQNMSMQGSVFWM  177 (272)
T ss_pred             HHHHHHhh-CCeeecCCChhhEEEcCCC--------------------eEEEeeccccccccccccccccccccCCcccc
Confidence            99999999 9999999999999999887                    79999999997653221       01123477


Q ss_pred             CCCCCCCCC--CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhcc--CCCC--CccchHHHHHHHHHhcccc
Q 013230          354 DPELFSGPK--GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKK--TFDR--SSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       354 ~pelf~g~~--~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~--~~~~--~~~~s~~l~dLl~~mL~~d  427 (447)
                      +||.+.+..  ...+.|+|+ +|.+.+++..|..|+..........+......  .++.  ...++.++++||.+||..+
T Consensus       178 ~PE~~~~~~~~~~~~~Dv~s-lG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  256 (272)
T cd06629         178 APEVIHSYSQGYSAKVDIWS-LGCVVLEMFAGRRPWSDEEAIAAMFKLGNKRSAPPIPPDVSMNLSPVALDFLNACFTIN  256 (272)
T ss_pred             CHHHhccccCCCCccchhHH-HHHHHHHHHhCCCCCcCcchHHHHHHhhccccCCcCCccccccCCHHHHHHHHHHhcCC
Confidence            898887644  455679999 89999999999988865433222222221111  1211  1246889999999999999


Q ss_pred             -----CHHHHHcCCCC
Q 013230          428 -----SAKEAIFDPFF  438 (447)
Q Consensus       428 -----sa~elL~HPff  438 (447)
                           |++++|+||||
T Consensus       257 p~~Rps~~~il~~~~~  272 (272)
T cd06629         257 PDNRPTARELLQHPFI  272 (272)
T ss_pred             hhhCCCHHHHhhCCCC
Confidence                 99999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.97  E-value=6.6e-30  Score=246.34  Aligned_cols=232  Identities=20%  Similarity=0.228  Sum_probs=179.1

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+++++||+|+||.||+|++      +|+|++.....        .....+.+|+.++++++|        ||    |+
T Consensus        10 ~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~--------~~~~~~~~e~~~l~~~~h--------~~----ii   69 (267)
T cd06646          10 DYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPG--------DDFSLIQQEIFMVKECKH--------CN----IV   69 (267)
T ss_pred             hcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCcc--------chHHHHHHHHHHHHhcCC--------CC----ee
Confidence            469999999999999999973      89998864321        123457889999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              ++..|+||||+.+| +|.+++.    +++..+..++.|++.|
T Consensus        70 ~~~~~~~~------------------------------~~~~~iv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~qi~~~  118 (267)
T cd06646          70 AYFGSYLS------------------------------REKLWICMEYCGGG-SLQDIYHVTGPLSELQIAYVCRETLQG  118 (267)
T ss_pred             eeeEEEEe------------------------------CCEEEEEEeCCCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            99998653                              46689999999987 9988775    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pel  357 (447)
                      |+|||+ .||+||||||+||+++.++                    .+||+|||+++.....     +......|++||.
T Consensus       119 l~~lH~-~~i~H~dl~p~nill~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~  177 (267)
T cd06646         119 LAYLHS-KGKMHRDIKGANILLTDNG--------------------DVKLADFGVAAKITATIAKRKSFIGTPYWMAPEV  177 (267)
T ss_pred             HHHHHH-CCccccCCCHHHEEECCCC--------------------CEEECcCccceeecccccccCccccCccccCHhH
Confidence            999999 9999999999999998887                    7999999999865322     1122334788998


Q ss_pred             CCC---CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh---hccCCCCCccchHHHHHHHHHhcccc----
Q 013230          358 FSG---PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL---LKKTFDRSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       358 f~g---~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~---~~~~~~~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      +.+   .....+.|+|+ +|.+.+++.++..|+.+............   ....++....++.++++||++||..|    
T Consensus       178 ~~~~~~~~~~~~~Dvws-~G~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R  256 (267)
T cd06646         178 AAVEKNGGYNQLCDIWA-VGITAIELAELQPPMFDLHPMRALFLMSKSNFQPPKLKDKTKWSSTFHNFVKISLTKNPKKR  256 (267)
T ss_pred             cccccCCCCcchhhHHH-HHHHHHHHHhCCCCccccchhhhheeeecCCCCCCCCccccccCHHHHHHHHHHhhCChhhC
Confidence            743   22345569999 89999999999888754322111111110   01111222356889999999999998    


Q ss_pred             -CHHHHHcCCC
Q 013230          428 -SAKEAIFDPF  437 (447)
Q Consensus       428 -sa~elL~HPf  437 (447)
                       |++++|+|+|
T Consensus       257 p~~~~il~~l~  267 (267)
T cd06646         257 PTAERLLTHLF  267 (267)
T ss_pred             cCHHHHhcCCC
Confidence             9999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.97  E-value=1.2e-29  Score=247.80  Aligned_cols=240  Identities=16%  Similarity=0.198  Sum_probs=185.7

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+.+++||.|+||.||+|.+      +|+|.+....       .......+.+|+++++.++|        ||    |+
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~-------~~~~~~~~~~e~~~l~~l~h--------~~----iv   62 (287)
T cd06621           2 KIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDP-------NPDLQKQILRELEINKSCKS--------PY----IV   62 (287)
T ss_pred             ceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCC-------chHHHHHHHHHHHHHHhCCC--------CC----ee
Confidence            458899999999999999984      8999877432       12344678999999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQ  278 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Q  278 (447)
                      ++++++...                            ..+.+|+||||+.+| +|.+++.        +++..+..++.|
T Consensus        63 ~~~~~~~~~----------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~~  113 (287)
T cd06621          63 KYYGAFLDE----------------------------SSSSIGIAMEYCEGG-SLDSIYKKVKKRGGRIGEKVLGKIAES  113 (287)
T ss_pred             eeeeEEEcc----------------------------CCCeEEEEEEecCCC-CHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            999986431                            135689999999987 8887653        788999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC---EEEEecCCCC
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED---IFFLDLSQDP  355 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g---~i~~~~~~~p  355 (447)
                      |+.||+|||+ .|++|+||+|+||+++.++                    .++|+|||++.......   ......|++|
T Consensus       114 i~~~L~~lH~-~~i~H~dl~~~nil~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~y~~p  172 (287)
T cd06621         114 VLKGLSYLHS-RKIIHRDIKPSNILLTRKG--------------------QVKLCDFGVSGELVNSLAGTFTGTSFYMAP  172 (287)
T ss_pred             HHHHHHHHHH-CCcccCCCCHHHEEEecCC--------------------eEEEeeccccccccccccccccCCccccCH
Confidence            9999999999 9999999999999999887                    79999999987644321   1123347899


Q ss_pred             CCCCCCCCCchHHHHHhhccCCcccccCCCCCChh----HHHHHHHHHHhh-c-cCCCC----CccchHHHHHHHHHhcc
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV----LWLVYLVDMLLL-K-KTFDR----SSKDERDLRSLKKRLDK  425 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~----~~~~~~~~~l~~-~-~~~~~----~~~~s~~l~dLl~~mL~  425 (447)
                      |.+.+...+...|+|+ +|++.+++++|..|+...    .........+.. . ..++.    ...+++++++||.+||.
T Consensus       173 E~~~~~~~~~~~Dv~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  251 (287)
T cd06621         173 ERIQGKPYSITSDVWS-LGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNMPNPELKDEPGNGIKWSEEFKDFIKQCLE  251 (287)
T ss_pred             HHhcCCCCCchhhHHH-HHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcCCchhhccCCCCCCchHHHHHHHHHHHcC
Confidence            9888777777789999 999999999999887644    111111111111 1 11111    12457899999999999


Q ss_pred             cc-----CHHHHHcCCCCCCCC
Q 013230          426 YN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       426 ~d-----sa~elL~HPff~~~~  442 (447)
                      .|     |+.|+++||||+...
T Consensus       252 ~~p~~Rpt~~eil~~~~~~~~~  273 (287)
T cd06621         252 KDPTRRPTPWDMLEHPWIKAQM  273 (287)
T ss_pred             CCcccCCCHHHHHhCccccccc
Confidence            99     999999999997653

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.5e-29  Score=242.51  Aligned_cols=232  Identities=21%  Similarity=0.234  Sum_probs=184.5

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||+|+||.||+|++      +|+|++.....        .....+.+|+.+++.++|        ||    |+
T Consensus         4 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~--------~~~~~~~~e~~~l~~~~h--------~~----i~   63 (262)
T cd06613           4 DYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPG--------DDFEIIQQEISMLKECRH--------PN----IV   63 (262)
T ss_pred             ceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCch--------hhHHHHHHHHHHHHhCCC--------CC----hh
Confidence            458999999999999999973      89998875421        134678999999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      ++++.+..                              .+.+|++|||+.+| +|.+++.     +++..++.++.|++.
T Consensus        64 ~~~~~~~~------------------------------~~~~~l~~e~~~~~-~l~~~~~~~~~~l~~~~~~~~~~ql~~  112 (262)
T cd06613          64 AYFGSYLR------------------------------RDKLWIVMEYCGGG-SLQDIYQVTRGPLSELQIAYVCRETLK  112 (262)
T ss_pred             ceEEEEEe------------------------------CCEEEEEEeCCCCC-cHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence            99988543                              56699999999977 9988774     899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pe  356 (447)
                      ||+|||+ +||+|+||||+||+++.++                    .+||+|||++......+     .+....|++||
T Consensus       113 ~l~~lh~-~~i~h~dl~p~ni~i~~~~--------------------~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~Pe  171 (262)
T cd06613         113 GLAYLHE-TGKIHRDIKGANILLTEDG--------------------DVKLADFGVSAQLTATIAKRKSFIGTPYWMAPE  171 (262)
T ss_pred             HHHHHHh-CCceecCCChhhEEECCCC--------------------CEEECccccchhhhhhhhccccccCCccccCch
Confidence            9999999 9999999999999999887                    79999999987654322     12223478999


Q ss_pred             CCCCC---CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh---ccCCCCCccchHHHHHHHHHhcccc---
Q 013230          357 LFSGP---KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL---KKTFDRSSKDERDLRSLKKRLDKYN---  427 (447)
Q Consensus       357 lf~g~---~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~---~~~~~~~~~~s~~l~dLl~~mL~~d---  427 (447)
                      .+.+.   ..+.+.|+|+ +|.+.+++++|..|+...............   .........++.++++|+++||..|   
T Consensus       172 ~~~~~~~~~~~~~~Di~s-lG~~l~~~~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  250 (262)
T cd06613         172 VAAVERKGGYDGKCDIWA-LGITAIELAELQPPMFDLHPMRALFLISKSNFPPPKLKDKEKWSPVFHDFIKKCLTKDPKK  250 (262)
T ss_pred             hhcccccCCcCchhhhHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCccccchhhhhHHHHHHHHHHcCCChhh
Confidence            99776   5666779999 899999999999998654322222222111   0111123456789999999999999   


Q ss_pred             --CHHHHHcCCC
Q 013230          428 --SAKEAIFDPF  437 (447)
Q Consensus       428 --sa~elL~HPf  437 (447)
                        |+.+++.|||
T Consensus       251 Rpt~~~il~~~~  262 (262)
T cd06613         251 RPTATKLLQHPF  262 (262)
T ss_pred             CCCHHHHhcCCC
Confidence              9999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.97  E-value=1e-29  Score=249.21  Aligned_cols=242  Identities=20%  Similarity=0.229  Sum_probs=182.4

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|.+      ||+|++.....   ..........+..|+.+++.++|        +|    |++
T Consensus         2 y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~---~~~~~~~~~~~~~e~~~l~~~~h--------~~----i~~   66 (298)
T cd07841           2 YEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGER---KEAKDGINFTALREIKLLQELKH--------PN----IIG   66 (298)
T ss_pred             ceeeeeeeeccccEEEEEEECCCCcEEEEEEEecccc---ccccchhhHHHHHHHHHHhhcCC--------CC----Chh
Confidence            58899999999999999973      99999875432   00112233556789999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++..                              ++.+|+||||+ +| +|.+++.     +++..++.++.||+.|
T Consensus        67 ~~~~~~~------------------------------~~~~~lv~e~~-~~-~L~~~i~~~~~~~~~~~~~~~~~qi~~a  114 (298)
T cd07841          67 LLDVFGH------------------------------KSNINLVFEFM-ET-DLEKVIKDKSIVLTPADIKSYMLMTLRG  114 (298)
T ss_pred             hhheeec------------------------------CCEEEEEEccc-CC-CHHHHHhccCCCCCHHHHHHHHHHHHHH
Confidence            9998543                              56799999999 77 9998875     7899999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pel  357 (447)
                      |+|||+ +||+||||||+|||++.++                    .++|+|||+++.....+     ......|++||.
T Consensus       115 l~~lH~-~~i~H~dl~p~nill~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  173 (298)
T cd07841         115 LEYLHS-NWILHRDLKPNNLLIASDG--------------------VLKLADFGLARSFGSPNRKMTHQVVTRWYRAPEL  173 (298)
T ss_pred             HHHHHh-CCeeecCCChhhEEEcCCC--------------------CEEEccceeeeeccCCCccccccccceeeeCHHH
Confidence            999999 9999999999999999987                    79999999998765432     122234788998


Q ss_pred             CCCCC-CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc-----------------------cCCC---CCc
Q 013230          358 FSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK-----------------------KTFD---RSS  410 (447)
Q Consensus       358 f~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~-----------------------~~~~---~~~  410 (447)
                      +.+.. .....|+|+ +|.+.++++.+..++....-...+.+....-                       ...+   ...
T Consensus       174 ~~~~~~~~~~~Dv~s-lG~il~e~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (298)
T cd07841         174 LFGARHYGVGVDMWS-VGCIFAELLLRVPFLPGDSDIDQLGKIFEALGTPTEENWPGVTSLPDYVEFKPFPPTPLKQIFP  252 (298)
T ss_pred             HhCCCCCCcHHHHHH-HHHHHHHHHcCCccccCCccHHHHHHHHHHcCCCchhhhhhcccccccccccccCCcchhhhcc
Confidence            86533 345669999 8999999999865553322111111111000                       0000   012


Q ss_pred             cchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          411 KDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       411 ~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                      ..+.++++||.+||.+|     |++|++.||||++...+
T Consensus       253 ~~~~~~~~li~~~l~~~P~~R~s~~e~l~~~~~~~~~~~  291 (298)
T cd07841         253 AASDDALDLLQRLLTLNPNKRITARQALEHPYFSNDPAP  291 (298)
T ss_pred             cccHHHHHHHHHHhcCCcccCcCHHHHhhCccccCCCCC
Confidence            35789999999999999     99999999999987654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.97  E-value=1e-29  Score=248.41  Aligned_cols=236  Identities=18%  Similarity=0.219  Sum_probs=181.7

Q ss_pred             CcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          134 PENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      |++.++||+|+||.||+|.           .||+|.+....       .......+.+|+.+++.++|        +|  
T Consensus         8 ~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~~~e~~~l~~l~~--------~~--   70 (288)
T cd05061           8 ITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESA-------SLRERIEFLNEASVMKGFTC--------HH--   70 (288)
T ss_pred             ceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcC-------CHHHHHHHHHHHHHHHhCCC--------CC--
Confidence            5899999999999999974           37888765321       11223457889999999988        77  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------------CC
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------------LN  268 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------------l~  268 (447)
                        |+++++++..                              .+..|+||||+.+| +|.+++.              ++
T Consensus        71 --i~~~~~~~~~------------------------------~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~~~~  117 (288)
T cd05061          71 --VVRLLGVVSK------------------------------GQPTLVVMELMAHG-DLKSYLRSLRPEAENNPGRPPPT  117 (288)
T ss_pred             --eeeEEEEEcC------------------------------CCCcEEEEeCCCCC-CHHHHHHHhccccccCCCCCCCC
Confidence              9999998432                              45689999999988 9999874              24


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----
Q 013230          269 INEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----  344 (447)
Q Consensus       269 ~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----  344 (447)
                      ...+..++.||+.||+|||+ +||+||||||+|||++.++                    .+||+|||+++.....    
T Consensus       118 ~~~~~~~~~~l~~~l~~lH~-~~i~H~dikp~nili~~~~--------------------~~~L~Dfg~~~~~~~~~~~~  176 (288)
T cd05061         118 LQEMIQMAAEIADGMAYLNA-KKFVHRDLAARNCMVAHDF--------------------TVKIGDFGMTRDIYETDYYR  176 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-CCCcCCCCChheEEEcCCC--------------------cEEECcCCcccccccccccc
Confidence            56788999999999999999 9999999999999999887                    7999999999854322    


Q ss_pred             --CE-EEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHH
Q 013230          345 --DI-FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLK  420 (447)
Q Consensus       345 --g~-i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl  420 (447)
                        +. .....|++||.+.+...+.+.|+|+ +|.+.++++. +..|+............. .....+.+...++++++++
T Consensus       177 ~~~~~~~~~~y~~pE~~~~~~~~~~~Dvws-lG~~l~el~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li  254 (288)
T cd05061         177 KGGKGLLPVRWMAPESLKDGVFTTSSDMWS-FGVVLWEITSLAEQPYQGLSNEQVLKFVM-DGGYLDQPDNCPERVTDLM  254 (288)
T ss_pred             ccCCCcccccccCHHHhccCCCChHhHHHH-HHHHHHHHHhCCCCCCCCCCHHHHHHHHH-cCCCCCCCCCCCHHHHHHH
Confidence              11 1123478999888767777789999 9999999887 556775544333332222 2222333455678999999


Q ss_pred             HHhcccc-----CHHHHHc------CCCCCCCC
Q 013230          421 KRLDKYN-----SAKEAIF------DPFFSDLI  442 (447)
Q Consensus       421 ~~mL~~d-----sa~elL~------HPff~~~~  442 (447)
                      .+||+.|     |+.++++      ||||+++.
T Consensus       255 ~~~l~~~p~~Rps~~~ll~~l~~~~~~~~~~~~  287 (288)
T cd05061         255 RMCWQFNPKMRPTFLEIVNLLKDDLHPSFPEVS  287 (288)
T ss_pred             HHHcCCChhHCcCHHHHHHHHHhhcCCCCCCCC
Confidence            9999999     8999876      99999863

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=2.2e-30  Score=265.01  Aligned_cols=233  Identities=24%  Similarity=0.287  Sum_probs=187.0

Q ss_pred             eEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeee
Q 013230          137 IVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       137 ~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      --+||+|+||+||-|++      .|||.|+.+.        ....+-+.+||.+.++|+|        .|    ||++++
T Consensus       580 rvVLGKGTYG~VYA~RD~~tqvrIaIKEIpekd--------sr~~QPLhEEIaLH~~LrH--------kN----IVrYLG  639 (1226)
T KOG4279|consen  580 RVVLGKGTYGTVYAARDMDTQVRIAIKEIPEKD--------SREVQPLHEEIALHSTLRH--------KN----IVRYLG  639 (1226)
T ss_pred             eEEeecCceeEEEeeccccceeEEEeeeccccc--------chhhccHHHHHHHHHHHhh--------Hh----HHHHhh
Confidence            35799999999999995      8999888543        2344568999999999999        88    999999


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----C--CHHHHHHHHHHHHHHH
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----L--NINEARSLLVQVTAGL  283 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l--~~~~~~~i~~Qil~gL  283 (447)
                      .+-                              .++.+-|.||-++|| +|..+++     +  ++..+-++.+||+.||
T Consensus       640 s~s------------------------------enGf~kIFMEqVPGG-SLSsLLrskWGPlKDNEstm~fYtkQILeGL  688 (1226)
T KOG4279|consen  640 SVS------------------------------ENGFFKIFMEQVPGG-SLSSLLRSKWGPLKDNESTMNFYTKQILEGL  688 (1226)
T ss_pred             ccC------------------------------CCCeEEEEeecCCCC-cHHHHHHhccCCCccchhHHHHHHHHHHHHh
Confidence            832                              245678999999999 9999987     4  8899999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCC-CCE--EE--EecCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG-EDI--FF--LDLSQDPELF  358 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~-~g~--i~--~~~~~~pelf  358 (447)
                      .|||+ +.|||||||-+|+||..-..                   .+||+|||.|+...+ +.|  .|  .--||+||+.
T Consensus       689 kYLHe-n~IVHRDIKGDNVLvNTySG-------------------vlKISDFGTsKRLAginP~TETFTGTLQYMAPEvI  748 (1226)
T KOG4279|consen  689 KYLHE-NKIVHRDIKGDNVLVNTYSG-------------------VLKISDFGTSKRLAGINPCTETFTGTLQYMAPEVI  748 (1226)
T ss_pred             hhhhh-cceeeccccCCcEEEeeccc-------------------eEEecccccchhhccCCccccccccchhhhChHhh
Confidence            99999 99999999999999987653                   799999999876533 223  12  2238999999


Q ss_pred             C-CCCCCc-hHHHHHhhccCCcccccCCCCCChhHHHH-HHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          359 S-GPKGDK-QFDTYRKMKKVTEDQWEGSFPKTNVLWLV-YLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       359 ~-g~~~~~-~~di~s~lg~~~~~~~~~~~p~~~~~~~~-~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      . |..+.. ..|||+ +|+...+|.+|..||...-.++ .+.+.-.-+...|.|..++.+++.||.+|+..|     +|.
T Consensus       749 DqG~RGYG~aADIWS-~GCT~vEMATGrPPF~ElgspqAAMFkVGmyKvHP~iPeelsaeak~FilrcFepd~~~R~sA~  827 (1226)
T KOG4279|consen  749 DQGPRGYGKAADIWS-FGCTMVEMATGRPPFVELGSPQAAMFKVGMYKVHPPIPEELSAEAKNFILRCFEPDPCDRPSAK  827 (1226)
T ss_pred             ccCCcCCCchhhhhh-ccceeEeeccCCCCeeecCChhHhhhhhcceecCCCCcHHHHHHHHHHHHHHcCCCcccCccHH
Confidence            4 433333 349999 9999999999999997543222 222222224567778899999999999999999     999


Q ss_pred             HHHcCCCCCCC
Q 013230          431 EAIFDPFFSDL  441 (447)
Q Consensus       431 elL~HPff~~~  441 (447)
                      ++|.+||++.-
T Consensus       828 ~LL~DpFlq~~  838 (1226)
T KOG4279|consen  828 DLLQDPFLQHN  838 (1226)
T ss_pred             HhccCcccccC
Confidence            99999999854

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.97  E-value=1.1e-29  Score=246.04  Aligned_cols=227  Identities=19%  Similarity=0.246  Sum_probs=172.9

Q ss_pred             cceEEe--ccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCcccce
Q 013230          135 ENIVKV--GEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTTF  205 (447)
Q Consensus       135 ~~~~~L--G~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~i  205 (447)
                      ++.+.+  |+|+||.||+|+.      +|+|++.....      .       ..|+.+...+ +|        +|    |
T Consensus        17 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~------~-------~~e~~~~~~~~~h--------~~----i   71 (267)
T PHA03390         17 EIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNF------N-------AIEPMVHQLMKDN--------PN----F   71 (267)
T ss_pred             ccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhc------c-------hhhHHHHHHhhcC--------CC----E
Confidence            555555  9999999999973      88888764321      0       1123232222 34        66    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTA  281 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~  281 (447)
                      +++++.+..                              ++..|+||||+.+| +|.+++.    +++..++.++.||+.
T Consensus        72 v~~~~~~~~------------------------------~~~~~iv~e~~~~~-~L~~~l~~~~~l~~~~~~~~~~qi~~  120 (267)
T PHA03390         72 IKLYYSVTT------------------------------LKGHVLIMDYIKDG-DLFDLLKKEGKLSEAEVKKIIRQLVE  120 (267)
T ss_pred             EEEEEEEec------------------------------CCeeEEEEEcCCCC-cHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            999998643                              56799999999988 9999876    899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE-EEecCCCCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF-FLDLSQDPELFSG  360 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i-~~~~~~~pelf~g  360 (447)
                      ||.|||+ .|++||||||+||+++.++.                   .++|+|||+++........ ....|++||.+.+
T Consensus       121 ~l~~lH~-~~i~H~dl~p~nil~~~~~~-------------------~~~l~dfg~~~~~~~~~~~~~~~~y~aPE~~~~  180 (267)
T PHA03390        121 ALNDLHK-HNIIHNDIKLENVLYDRAKD-------------------RIYLCDYGLCKIIGTPSCYDGTLDYFSPEKIKG  180 (267)
T ss_pred             HHHHHHh-CCeeeCCCCHHHEEEeCCCC-------------------eEEEecCccceecCCCccCCCCCcccChhhhcC
Confidence            9999999 99999999999999998863                   6999999999876544221 2234789999988


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhHHHH----HHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C-HH
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLV----YLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S-AK  430 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~----~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s-a~  430 (447)
                      .......|+|+ +|.+.+++++|..|+.......    .+....  ....+.....++.+++||.+||+.|     + ++
T Consensus       181 ~~~~~~~Dvws-lG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~  257 (267)
T PHA03390        181 HNYDVSFDWWA-VGVLTYELLTGKHPFKEDEDEELDLESLLKRQ--QKKLPFIKNVSKNANDFVQSMLKYNINYRLTNYN  257 (267)
T ss_pred             CCCCchhhHHH-HHHHHHHHHHCCCCCCCCCcchhhHHHHHHhh--cccCCcccccCHHHHHHHHHHhccChhhCCchHH
Confidence            77777789999 8999999999999986432111    111111  1223334568999999999999998     4 59


Q ss_pred             HHHcCCCCCC
Q 013230          431 EAIFDPFFSD  440 (447)
Q Consensus       431 elL~HPff~~  440 (447)
                      |+|+||||..
T Consensus       258 ~~l~h~~~~~  267 (267)
T PHA03390        258 EIIKHPFLKI  267 (267)
T ss_pred             HHhcCCcccC
Confidence            9999999974

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.97  E-value=3.8e-30  Score=246.28  Aligned_cols=233  Identities=21%  Similarity=0.256  Sum_probs=183.4

Q ss_pred             eccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEEE
Q 013230          140 VGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKV  213 (447)
Q Consensus       140 LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~~  213 (447)
                      ||.|+||.||+|++      +|+|++.....     ..+...+.+.+|+.++++++|        +|    |+++++.+.
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~-----~~~~~~~~~~~e~~~l~~~~h--------~~----i~~~~~~~~   63 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADM-----IRKNQVDQVLTERDILSQAQS--------PY----VVKLYYSFQ   63 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhh-----hhhhHHHHHHHHHHHHHhCCC--------cc----hhHHHHhee
Confidence            69999999999974      89998865422     223445678999999999988        88    899887743


Q ss_pred             EeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHHHHh
Q 013230          214 CQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVAEAA  289 (447)
Q Consensus       214 ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~ylH~~  289 (447)
                                                    ..+..|++|||+.+| +|.+++.    +++..+..++.||+.||+|||+ 
T Consensus        64 ------------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~lH~-  111 (265)
T cd05579          64 ------------------------------GKKNLYLVMEYLPGG-DLASLLENVGSLDEDVARIYIAEIVLALEYLHS-  111 (265)
T ss_pred             ------------------------------cCcEEEEEEecCCCC-cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence                                          256799999999987 9998876    8999999999999999999999 


Q ss_pred             CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-------------CEEEEecCCCCC
Q 013230          290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-------------DIFFLDLSQDPE  356 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-------------g~i~~~~~~~pe  356 (447)
                      .|++||||+|+||+++.++                    .++|+|||++......             .......|++||
T Consensus       112 ~~i~H~di~~~nil~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe  171 (265)
T cd05579         112 NGIIHRDLKPDNILIDSNG--------------------HLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPE  171 (265)
T ss_pred             cCeecCCCCHHHeEEcCCC--------------------CEEEEecccchhcccCcccccccccccccCcccCccccCHH
Confidence            9999999999999999987                    7999999998764332             112233478899


Q ss_pred             CCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CH--
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SA--  429 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa--  429 (447)
                      .+.+.....+.|+|+ +|.+.+++++|..|+..................++.....+.++.+|+++||+.+     |+  
T Consensus       172 ~~~~~~~~~~~Dv~s-lG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~  250 (265)
T cd05579         172 VILGQGHSKTVDWWS-LGCILYEFLVGIPPFHGETPEEIFQNILNGKIEWPEDVEVSDEAIDLISKLLVPDPEKRLGAKS  250 (265)
T ss_pred             HhcCCCCCcchhhHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCcCCCccccCCHHHHHHHHHHhcCCHhhcCCCcc
Confidence            887766666779999 8999999999998886554333333333222223322234899999999999999     66  


Q ss_pred             -HHHHcCCCCCCCC
Q 013230          430 -KEAIFDPFFSDLI  442 (447)
Q Consensus       430 -~elL~HPff~~~~  442 (447)
                       .++|+||||+++.
T Consensus       251 ~~~~l~~~~~~~~~  264 (265)
T cd05579         251 IEEIKNHPFFKGID  264 (265)
T ss_pred             HHHHhcCccccCCC
Confidence             9999999999764

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.97  E-value=6e-30  Score=251.15  Aligned_cols=240  Identities=21%  Similarity=0.259  Sum_probs=189.1

Q ss_pred             hhhccCCCcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCC
Q 013230          127 LFSKYSDPENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLN  200 (447)
Q Consensus       127 ~~~~y~~~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n  200 (447)
                      ..++|   ++++.||+|+||.||+|.      .+|+|.+....        ....+.+.+|+.+++.++|        ||
T Consensus        17 ~~~~~---~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~--------~~~~~~~~~e~~~l~~l~h--------p~   77 (293)
T cd06647          17 PKKKY---TRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQ--------QPKKELIINEILVMRENKH--------PN   77 (293)
T ss_pred             chhhc---eeeeEecCCCCeEEEEEEEcCCCCEEEEEEecccc--------chHHHHHHHHHHHHhhcCC--------CC
Confidence            34555   899999999999999996      38999875332        1234668899999999988        88


Q ss_pred             cccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHH
Q 013230          201 ACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLV  277 (447)
Q Consensus       201 ~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~  277 (447)
                          |+++++.+..                              .+..|+||||+.+| +|.+++.   +++..+..++.
T Consensus        78 ----i~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~l~~~~~~~i~~  122 (293)
T cd06647          78 ----IVNYLDSYLV------------------------------GDELWVVMEYLAGG-SLTDVVTETCMDEGQIAAVCR  122 (293)
T ss_pred             ----eeehhheeee------------------------------CCcEEEEEecCCCC-cHHHHHhhcCCCHHHHHHHHH
Confidence                9999998543                              45689999999988 9999876   88999999999


Q ss_pred             HHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----EEEecC
Q 013230          278 QVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----FFLDLS  352 (447)
Q Consensus       278 Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i~~~~~  352 (447)
                      |++.||+|||+ .|++||||||+||+++.++                    .+||+|||++........     .....|
T Consensus       123 ~l~~al~~LH~-~gi~H~dL~p~Nili~~~~--------------------~~kL~dfg~~~~~~~~~~~~~~~~~~~~y  181 (293)
T cd06647         123 ECLQALEFLHS-NQVIHRDIKSDNILLGMDG--------------------SVKLTDFGFCAQITPEQSKRSTMVGTPYW  181 (293)
T ss_pred             HHHHHHHHHHh-CCEeeccCCHHHEEEcCCC--------------------CEEEccCcceecccccccccccccCChhh
Confidence            99999999999 9999999999999999886                    799999999876543321     122237


Q ss_pred             CCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHH-hhccCCCCCccchHHHHHHHHHhcccc----
Q 013230          353 QDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDML-LLKKTFDRSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       353 ~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l-~~~~~~~~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      ++||.+.+.....+.|+|+ +|.+.++++.|..|+........+.... .....++.+..++..+++|+.+||..+    
T Consensus       182 ~~PE~~~~~~~~~~~Dv~s-lG~ll~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R  260 (293)
T cd06647         182 MAPEVVTRKAYGPKVDIWS-LGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKR  260 (293)
T ss_pred             cCchhhccCCCCchhhHHH-HHHHHHHHHhCCCCCCCCChhhheeehhcCCCCCCCCccccCHHHHHHHHHHccCChhhC
Confidence            8999887766677789999 8999999999999886542222111111 112233334457889999999999998    


Q ss_pred             -CHHHHHcCCCCCCCC
Q 013230          428 -SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 -sa~elL~HPff~~~~  442 (447)
                       ++.+++.||||+...
T Consensus       261 p~~~~il~h~~~~~~~  276 (293)
T cd06647         261 GSAKELLQHPFLKIAK  276 (293)
T ss_pred             cCHHHHhcCHHHhcCc
Confidence             999999999998654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.97  E-value=1.9e-29  Score=246.73  Aligned_cols=241  Identities=22%  Similarity=0.312  Sum_probs=177.9

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|++.+.||+|+||.||+|.+      ||+|++.....      .......+.+|+.+++.+.|  |     +|    |+
T Consensus         2 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~------~~~~~~~~~~E~~~l~~l~~--~-----~~----i~   64 (295)
T cd07837           2 AYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMD------EEGIPPTALREISLLQMLSE--S-----IY----IV   64 (295)
T ss_pred             CceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhcc------ccCCchHHHHHHHHHHHccC--C-----CC----cc
Confidence            468999999999999999973      99998765421      22233567889999999964  1     55    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------CCHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------LNINEARSLLV  277 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------l~~~~~~~i~~  277 (447)
                      ++++++.....                         ......|+||||+. | +|.+++.         +++..++.++.
T Consensus        65 ~~~~~~~~~~~-------------------------~~~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~~~~~~~~~~~~~  117 (295)
T cd07837          65 RLLDVEHVEEK-------------------------NGKPSLYLVFEYLD-S-DLKKFMDSNGRGPGRPLPAKTIKSFMY  117 (295)
T ss_pred             ceeeeEeecCC-------------------------CCCceEEEEeeccC-c-CHHHHHHHhcccCCCCCCHHHHHHHHH
Confidence            99988654211                         01234899999998 5 7777653         68999999999


Q ss_pred             HHHHHHHHHHHhCCeeeccCCCCCEEEec-CCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEec
Q 013230          278 QVTAGLAVAEAAYEFEHRDLHWGNVLLSR-NDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDL  351 (447)
Q Consensus       278 Qil~gL~ylH~~~~iiHrDLKpeNILl~~-~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~  351 (447)
                      ||+.||+|||+ .||+||||||+||+++. ++                    .+||+|||+++.....     .......
T Consensus       118 qi~~~L~~LH~-~~i~H~dl~~~nil~~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~  176 (295)
T cd07837         118 QLLKGVAHCHK-HGVMHRDLKPQNLLVDKQKG--------------------LLKIADLGLGRAFSIPVKSYTHEIVTLW  176 (295)
T ss_pred             HHHHHHHHHHH-CCeeecCCChHHEEEecCCC--------------------eEEEeecccceecCCCccccCCcccccC
Confidence            99999999999 99999999999999998 54                    7999999999865332     1123344


Q ss_pred             CCCCCCCCCC-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh-----ccC------------CCC-----
Q 013230          352 SQDPELFSGP-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL-----KKT------------FDR-----  408 (447)
Q Consensus       352 ~~~pelf~g~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~-----~~~------------~~~-----  408 (447)
                      |++||.+.+. ..+.+.|+|+ +|.+.+++++|..|+........+.+....     ...            ++.     
T Consensus       177 ~~aPE~~~~~~~~~~~~Di~s-lG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (295)
T cd07837         177 YRAPEVLLGSTHYSTPVDIWS-VGCIFAEMSRKQPLFPGDSELQQLLHIFKLLGTPTEQVWPGVSKLRDWHEFPQWKPQD  255 (295)
T ss_pred             CCChHHhhCCCCCCchHHHHH-HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCCChhhCcchhhccchhhcCcccchh
Confidence            7899987653 3456679999 899999999998887543222211111100     000            000     


Q ss_pred             ----CccchHHHHHHHHHhcccc-----CHHHHHcCCCCC
Q 013230          409 ----SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFS  439 (447)
Q Consensus       409 ----~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~  439 (447)
                          ....+.++.+||.+||.+|     |++|++.||||+
T Consensus       256 ~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~~~~~~  295 (295)
T cd07837         256 LSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALTHPYFD  295 (295)
T ss_pred             HHHhccccCHHHHHHHHHHccCChhhcCCHHHHhcCCCcC
Confidence                1246889999999999999     999999999995

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.97  E-value=3.1e-29  Score=240.03  Aligned_cols=230  Identities=23%  Similarity=0.270  Sum_probs=185.7

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.++||+|+||.||+|.+      +|+|.+.....       ....+.+.+|+.+++.++|        +|    |+
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~-------~~~~~~~~~e~~~l~~l~h--------~~----i~   61 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKS-------SSAVEDSRKEAVLLAKMKH--------PN----IV   61 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcc-------hHHHHHHHHHHHHHHhCCC--------CC----cc
Confidence            368999999999999999973      89998864321       2234677889999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVT  280 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil  280 (447)
                      ++++.+..                              ++.+|++|||+.+| +|.+++.      +++..++.++.||+
T Consensus        62 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~i~  110 (255)
T cd08219          62 AFKESFEA------------------------------DGHLYIVMEYCDGG-DLMQKIKLQRGKLFPEDTILQWFVQMC  110 (255)
T ss_pred             eEEEEEEE------------------------------CCEEEEEEeeCCCC-cHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence            99998643                              56799999999988 8887764      78999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----EEEecCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----FFLDLSQDP  355 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i~~~~~~~p  355 (447)
                      .||.|||+ +||+|+||||+|||++.++                    .++|+|||+++.....+.     .....|++|
T Consensus       111 ~al~~lH~-~~i~H~dl~p~nili~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aP  169 (255)
T cd08219         111 LGVQHIHE-KRVLHRDIKSKNIFLTQNG--------------------KVKLGDFGSARLLTSPGAYACTYVGTPYYVPP  169 (255)
T ss_pred             HHHHHHhh-CCcccCCCCcceEEECCCC--------------------cEEEcccCcceeecccccccccccCCccccCH
Confidence            99999999 9999999999999999887                    799999999987654321     223348899


Q ss_pred             CCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      |++.+.....+.|+|+ +|.+.++++.+..|+....+......... ....+.+..++.++++||.+||..|     |+.
T Consensus       170 E~~~~~~~~~~~Dv~s-lG~i~~~l~~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~  247 (255)
T cd08219         170 EIWENMPYNNKSDIWS-LGCILYELCTLKHPFQANSWKNLILKVCQ-GSYKPLPSHYSYELRSLIKQMFKRNPRSRPSAT  247 (255)
T ss_pred             HHHccCCcCchhhhhh-hchhheehhhccCCCCCCCHHHHHHHHhc-CCCCCCCcccCHHHHHHHHHHHhCCcccCCCHH
Confidence            9998877777789999 89999999999999876555444333332 2222334567889999999999999     999


Q ss_pred             HHHcC
Q 013230          431 EAIFD  435 (447)
Q Consensus       431 elL~H  435 (447)
                      ++++-
T Consensus       248 ~il~~  252 (255)
T cd08219         248 TILSR  252 (255)
T ss_pred             HHhhc
Confidence            98863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.97  E-value=1.8e-29  Score=241.21  Aligned_cols=237  Identities=19%  Similarity=0.206  Sum_probs=184.5

Q ss_pred             CcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+..+.||+|+||.||+|.      .+|+|.+.....   ....+...+.+.+|+.+++.++|        +|    |++
T Consensus         2 ~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~~~~~~e~~~l~~~~h--------~~----i~~   66 (258)
T cd06632           2 WRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADD---GQTGQEAVKQLEQEIALLSKLQH--------PN----IVQ   66 (258)
T ss_pred             ccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccc---cccchHHHHHHHHHHHHHHhcCC--------CC----chh
Confidence            4778999999999999996      399998865432   11123345678899999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++.                              ....+|++|||+.+| +|.+++.    +++..++.++.||+.||
T Consensus        67 ~~~~~~------------------------------~~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~i~~~l  115 (258)
T cd06632          67 YLGTER------------------------------EEDNLYIFLELVPGG-SLAKLLKKYGSFPEPVIRLYTRQILLGL  115 (258)
T ss_pred             eeeeEe------------------------------cCCeEEEEEEecCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            998743                              246699999999977 9998876    78999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE----EEEecCCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI----FFLDLSQDPELFS  359 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~----i~~~~~~~pelf~  359 (447)
                      +|||+ .||+|+||+|+||+++.++                    .+||+|||++.......+    .....|++||.+.
T Consensus       116 ~~lH~-~~i~H~dl~~~ni~~~~~~--------------------~~kl~d~~~~~~~~~~~~~~~~~~~~~y~~pe~~~  174 (258)
T cd06632         116 EYLHD-RNTVHRDIKGANILVDTNG--------------------VVKLADFGMAKQVVEFSFAKSFKGSPYWMAPEVIA  174 (258)
T ss_pred             HHHHH-CCcccCCCCHHHEEECCCC--------------------CEEEccCccceeccccccccccCCCcceeCHHHhc
Confidence            99999 9999999999999999887                    799999999886543321    1223367888886


Q ss_pred             CCC-CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHH
Q 013230          360 GPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAI  433 (447)
Q Consensus       360 g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL  433 (447)
                      ... ...+.|+|+ +|.+.++++.+..|+.....................+..+++++++|+++||..+     |+.+++
T Consensus       175 ~~~~~~~~~D~~s-lG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l  253 (258)
T cd06632         175 QQGGYGLAADIWS-LGCTVLEMATGKPPWSQLEGVAAVFKIGRSKELPPIPDHLSDEAKDFILKCLQRDPSLRPTAAELL  253 (258)
T ss_pred             CCCCCCchhhhHH-HHHHHHHHHhCCCCcccCcHHHHHHHHHhcccCCCcCCCcCHHHHHHHHHHhhcCcccCcCHHHHh
Confidence            655 566779999 8999999999999986543222222222111122224567899999999999988     999999


Q ss_pred             cCCCC
Q 013230          434 FDPFF  438 (447)
Q Consensus       434 ~HPff  438 (447)
                      .|||+
T Consensus       254 ~~~~~  258 (258)
T cd06632         254 EHPFV  258 (258)
T ss_pred             cCCCC
Confidence            99996

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.97  E-value=5.4e-30  Score=252.09  Aligned_cols=238  Identities=21%  Similarity=0.295  Sum_probs=187.1

Q ss_pred             cceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      +...+||+|+||.||+|.+      +|+|++....        ....+.+.+|+.+++.++|        ||    ++++
T Consensus        24 ~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~--------~~~~~~~~~e~~~l~~l~h--------p~----i~~~   83 (297)
T cd06659          24 ENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRK--------QQRRELLFNEVVIMRDYQH--------QN----VVEM   83 (297)
T ss_pred             HhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecc--------cchHHHHHHHHHHHHhCCC--------Cc----hhhh
Confidence            4446899999999999963      9999886432        1234568899999999988        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLAV  285 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~y  285 (447)
                      ++.+..                              .+..|++|||+.+| +|..++.   +++..++.++.|++.||+|
T Consensus        84 ~~~~~~------------------------------~~~~~iv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~qi~~~L~~  132 (297)
T cd06659          84 YKSYLV------------------------------GEELWVLMEFLQGG-ALTDIVSQTRLNEEQIATVCESVLQALCY  132 (297)
T ss_pred             hhheee------------------------------CCeEEEEEecCCCC-CHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence            988543                              56799999999987 8988876   8999999999999999999


Q ss_pred             HHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCCCCC
Q 013230          286 AEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPELFSG  360 (447)
Q Consensus       286 lH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pelf~g  360 (447)
                      ||+ .||+||||||+|||++.++                    .+||+|||+++.....     .......|++||.+.+
T Consensus       133 LH~-~~ivH~dl~p~Nill~~~~--------------------~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  191 (297)
T cd06659         133 LHS-QGVIHRDIKSDSILLTLDG--------------------RVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISR  191 (297)
T ss_pred             HHh-CCeecCCCCHHHeEEccCC--------------------cEEEeechhHhhcccccccccceecCccccCHHHHcc
Confidence            999 9999999999999999887                    7999999998754332     1223344889999988


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc-cCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK-KTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~-~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      .......|+|+ +|.+.++++.|..|+........+....... .........+.++.+||++||+.+     |++++++
T Consensus       192 ~~~~~~~Dv~s-lG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll~  270 (297)
T cd06659         192 TPYGTEVDIWS-LGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNAHKISPVLRDFLERMLTREPQERATAQELLD  270 (297)
T ss_pred             CCCCchhhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHhcCCcccCcCHHHHhh
Confidence            77777779999 8999999999998886443222222111101 112223457889999999999999     9999999


Q ss_pred             CCCCCCCCCCC
Q 013230          435 DPFFSDLIVDR  445 (447)
Q Consensus       435 HPff~~~~~~~  445 (447)
                      ||||.+...++
T Consensus       271 ~~~~~~~~~~~  281 (297)
T cd06659         271 HPFLLQTGLPE  281 (297)
T ss_pred             ChhhccCCCcc
Confidence            99998776554

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.97  E-value=9.9e-30  Score=242.90  Aligned_cols=231  Identities=20%  Similarity=0.271  Sum_probs=185.1

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+..++||+|+||.||+|+.      +|+|.+....          ..+.+.+|+.+++.++|        +|    |+
T Consensus         4 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~----------~~~~~~~e~~~~~~l~~--------~~----i~   61 (256)
T cd06612           4 VFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEE----------DLQEIIKEISILKQCDS--------PY----IV   61 (256)
T ss_pred             cchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHH----------HHHHHHHHHHHHHhCCC--------Cc----Ee
Confidence            468999999999999999973      8889876331          14678999999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      ++++.+..                              +..+|++|||+.+| +|.+++.     +++..++.++.|++.
T Consensus        62 ~~~~~~~~------------------------------~~~~~l~~e~~~~~-~L~~~l~~~~~~l~~~~~~~~~~~l~~  110 (256)
T cd06612          62 KYYGSYFK------------------------------NTDLWIVMEYCGAG-SVSDIMKITNKTLTEEEIAAILYQTLK  110 (256)
T ss_pred             eeeeeeec------------------------------CCcEEEEEecCCCC-cHHHHHHhCccCCCHHHHHHHHHHHHH
Confidence            99998543                              56799999999977 9998875     799999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pe  356 (447)
                      ||.|||+ .||+||||+|+||+++.++                    .+||+|||++.......     ......|++||
T Consensus       111 ~l~~lh~-~~i~H~dl~~~ni~~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE  169 (256)
T cd06612         111 GLEYLHS-NKKIHRDIKAGNILLNEEG--------------------QAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPE  169 (256)
T ss_pred             HHHHHHH-CCcccCCCCcceEEECCCC--------------------cEEEcccccchhcccCccccccccCCccccCHH
Confidence            9999999 9999999999999999987                    79999999998755432     11223488999


Q ss_pred             CCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh-hccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL-LKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~-~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      .+.+...+.+.|+|+ +|.+.++++.+..|+.............. ....+..+..++.++.+||.+||+.|     |+.
T Consensus       170 ~~~~~~~~~~~Di~s-~G~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~  248 (256)
T cd06612         170 VIQEIGYNNKADIWS-LGITAIEMAEGKPPYSDIHPMRAIFMIPNKPPPTLSDPEKWSPEFNDFVKKCLVKDPEERPSAI  248 (256)
T ss_pred             HHhcCCCCchhhHHH-HHHHHHHHHhCCCCCCCcchhhhhhhhccCCCCCCCchhhcCHHHHHHHHHHHhcChhhCcCHH
Confidence            988877777789999 89999999999988865422221111111 11222233456789999999999998     999


Q ss_pred             HHHcCCCC
Q 013230          431 EAIFDPFF  438 (447)
Q Consensus       431 elL~HPff  438 (447)
                      |+|+||||
T Consensus       249 ~il~~~~~  256 (256)
T cd06612         249 QLLQHPFI  256 (256)
T ss_pred             HHhcCCCC
Confidence            99999998

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.97  E-value=1.1e-29  Score=246.67  Aligned_cols=237  Identities=17%  Similarity=0.245  Sum_probs=188.0

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+.+++||.|+||.||+|.+      +|+|++....       .......+.+|+.++++++|        +|    |++
T Consensus         6 y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~-------~~~~~~~~~~e~~~l~~l~h--------~~----i~~   66 (277)
T cd06640           6 FTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEE-------AEDEIEDIQQEITVLSQCDS--------PY----VTK   66 (277)
T ss_pred             hhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccc-------cHHHHHHHHHHHHHHHhCCC--------CC----Eee
Confidence            48889999999999999973      8999887432       12234678899999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~  284 (447)
                      +++++..                              .+..|+||||+.|| +|.+++.   +++..+..++.|++.||+
T Consensus        67 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~i~~~~l~~~~~~~~~~~l~~~l~  115 (277)
T cd06640          67 YYGSYLK------------------------------GTKLWIIMEYLGGG-SALDLLRAGPFDEFQIATMLKEILKGLD  115 (277)
T ss_pred             EEEEEEE------------------------------CCEEEEEEecCCCC-cHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            9998643                              56799999999988 8988877   899999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----EEEecCCCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----FFLDLSQDPELFS  359 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i~~~~~~~pelf~  359 (447)
                      |||+ .+++|+||+|+||+++.++                    .++|+|||++........     .....|++||.+.
T Consensus       116 ~lh~-~~ivH~dl~p~Nil~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~apE~~~  174 (277)
T cd06640         116 YLHS-EKKIHRDIKAANVLLSEQG--------------------DVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQ  174 (277)
T ss_pred             HHHh-CCccCcCCChhhEEEcCCC--------------------CEEEcccccceeccCCccccccccCcccccCHhHhc
Confidence            9999 9999999999999999887                    799999999977544321     1223478999988


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      +...+.+.|+|+ +|.+.+++++|..|+............. ...........+..+.+|+++||..+     |++++++
T Consensus       175 ~~~~~~~~Dv~s-lG~il~el~tg~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  252 (277)
T cd06640         175 QSAYDSKADIWS-LGITAIELAKGEPPNSDMHPMRVLFLIP-KNNPPTLTGEFSKPFKEFIDACLNKDPSFRPTAKELLK  252 (277)
T ss_pred             cCCCccHHHHHH-HHHHHHHHHHCCCCCCCcChHhHhhhhh-cCCCCCCchhhhHHHHHHHHHHcccCcccCcCHHHHHh
Confidence            877777889999 8999999999999886543222111111 11111123356789999999999998     9999999


Q ss_pred             CCCCCCCCC
Q 013230          435 DPFFSDLIV  443 (447)
Q Consensus       435 HPff~~~~~  443 (447)
                      ||||.....
T Consensus       253 ~~~~~~~~~  261 (277)
T cd06640         253 HKFIVKNAK  261 (277)
T ss_pred             ChHhhhcch
Confidence            999986543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.97  E-value=7.7e-31  Score=243.26  Aligned_cols=238  Identities=18%  Similarity=0.217  Sum_probs=185.6

Q ss_pred             cceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      +.+..||.|+||+|++-.      -.|+|.|+....       .+...+++.|.....+-.          | ||+||++
T Consensus        67 qdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~-------~keq~rll~e~d~~mks~----------~-cp~IVkf  128 (361)
T KOG1006|consen   67 QDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNI-------EKEQKRLLMEHDTVMKSS----------N-CPNIVKF  128 (361)
T ss_pred             HHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccc-------hHHHHHHHHHHHHHHhhc----------C-CcHHHHH
Confidence            566889999999999876      389999885422       233467788888766543          3 7779999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------CCHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------LNINEARSLLVQV  279 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------l~~~~~~~i~~Qi  279 (447)
                      |++                              .|.++.+||+||+|+  .+|..+.+         +++..+-.|....
T Consensus       129 yGa------------------------------~F~EGdcWiCMELMd--~SlDklYk~vy~vq~~~ipE~Ilg~Itvat  176 (361)
T KOG1006|consen  129 YGA------------------------------LFSEGDCWICMELMD--ISLDKLYKRVYSVQKSRIPENILGHITVAT  176 (361)
T ss_pred             hhh------------------------------hhcCCceeeeHHHHh--hhHHHHHHHHHHHHhccCcHhhhhheeeee
Confidence            999                              556788999999998  67877644         8999999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCC-------CCEEEEecC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG-------EDIFFLDLS  352 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~-------~g~i~~~~~  352 (447)
                      +.||.||-++..|||||+||+|||++..|                    .|||||||.+-...+       .||   --|
T Consensus       177 V~AL~yLK~~lkiIHRDvKPSNILldr~G--------------------~vKLCDFGIcGqLv~SiAkT~daGC---rpY  233 (361)
T KOG1006|consen  177 VDALDYLKEELKIIHRDVKPSNILLDRHG--------------------DVKLCDFGICGQLVDSIAKTVDAGC---RPY  233 (361)
T ss_pred             hhHHHHHHHHhhhhhccCChhheEEecCC--------------------CEeeecccchHhHHHHHHhhhccCC---ccc
Confidence            99999999889999999999999999998                    799999999876433       366   456


Q ss_pred             CCCCCCCCCC--CCchHHHHHhhccCCcccccCCCCCChhH-HHHHHHHHHhhcc-CCCCCc---cchHHHHHHHHHhcc
Q 013230          353 QDPELFSGPK--GDKQFDTYRKMKKVTEDQWEGSFPKTNVL-WLVYLVDMLLLKK-TFDRSS---KDERDLRSLKKRLDK  425 (447)
Q Consensus       353 ~~pelf~g~~--~~~~~di~s~lg~~~~~~~~~~~p~~~~~-~~~~~~~~l~~~~-~~~~~~---~~s~~l~dLl~~mL~  425 (447)
                      +|||-.....  ++-.+|+|+ +|+..++..+|.+|+..-. ....+.....+.+ .+..+.   ..+..++.||.-||.
T Consensus       234 mAPERi~p~~~gyDiRSDvWS-LGITL~EvAtG~fPyr~w~svfeql~~Vv~gdpp~l~~~~~~~~~s~~~~~fintCl~  312 (361)
T KOG1006|consen  234 MAPERIDPSDKGYDIRSDVWS-LGITLYEVATGNFPYRKWDSVFEQLCQVVIGDPPILLFDKECVHYSFSMVRFINTCLI  312 (361)
T ss_pred             cChhccCCccCCcchhhhhhh-hcceEeeeecCCCCcchHHHHHHHHHHHHcCCCCeecCcccccccCHHHHHHHHHHhh
Confidence            9999885432  445669999 9999999999999985421 2223344443321 122222   378999999999999


Q ss_pred             cc-----CHHHHHcCCCCCCCCCCCC
Q 013230          426 YN-----SAKEAIFDPFFSDLIVDRP  446 (447)
Q Consensus       426 ~d-----sa~elL~HPff~~~~~~~~  446 (447)
                      +|     ...+++++||++......|
T Consensus       313 Kd~~~Rpky~~Lk~~~fyr~y~~~~~  338 (361)
T KOG1006|consen  313 KDRSDRPKYDDLKKFPFYRMYAVEGP  338 (361)
T ss_pred             cccccCcchhhhhcCchhhhhhhcCC
Confidence            99     8999999999997766543

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.97  E-value=2.1e-29  Score=244.71  Aligned_cols=237  Identities=18%  Similarity=0.265  Sum_probs=186.5

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+.+++||+|+||.||+|.+      +|+|++....       .......+.+|+.++++++|        +|    |++
T Consensus         6 ~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~-------~~~~~~~~~~e~~~l~~l~h--------~~----iv~   66 (277)
T cd06641           6 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEE-------AEDEIEDIQQEITVLSQCDS--------PY----VTK   66 (277)
T ss_pred             hhhheeEeecCCeEEEEEEECCCCcEEEEEEecccc-------chHHHHHHHHHHHHHHhcCC--------CC----EeE
Confidence            47889999999999999963      8999876432       12234578899999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~  284 (447)
                      +++.+..                              ++..|+||||+.+| +|.+++.   +++..+..++.|++.||.
T Consensus        67 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~l~~~i~~~~~~~~~~~~~~~~l~~~l~  115 (277)
T cd06641          67 YYGSYLK------------------------------DTKLWIIMEYLGGG-SALDLLEPGPLDETQIATILREILKGLD  115 (277)
T ss_pred             EEEEEEe------------------------------CCeEEEEEEeCCCC-cHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            9998643                              56699999999987 9988876   899999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----EEEecCCCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----FFLDLSQDPELFS  359 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i~~~~~~~pelf~  359 (447)
                      |||+ .|++|+||||+||+++.++                    .++|+|||++........     .....|++||.+.
T Consensus       116 ~lh~-~~i~h~dl~p~Ni~i~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~  174 (277)
T cd06641         116 YLHS-EKKIHRDIKAANVLLSEHG--------------------EVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIK  174 (277)
T ss_pred             HHcc-CCeecCCCCHHhEEECCCC--------------------CEEEeecccceecccchhhhccccCCccccChhhhc
Confidence            9999 9999999999999999887                    799999999876544311     1223478899887


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      +.....+.|+|+ +|.+.+++++|..|+........... +............+.++.+++.+||+.+     ++.++++
T Consensus       175 ~~~~~~~~Dv~s-lG~~l~~l~~g~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~  252 (277)
T cd06641         175 QSAYDSKADIWS-LGITAIELAKGEPPHSELHPMKVLFL-IPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLK  252 (277)
T ss_pred             cCCCCchhhHHH-HHHHHHHHHcCCCCCCccchHHHHHH-HhcCCCCCCCcccCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence            766667779999 89999999999999865332221211 1111111123457889999999999988     9999999


Q ss_pred             CCCCCCCCC
Q 013230          435 DPFFSDLIV  443 (447)
Q Consensus       435 HPff~~~~~  443 (447)
                      ||||.....
T Consensus       253 ~~~~~~~~~  261 (277)
T cd06641         253 HKFIVRFAK  261 (277)
T ss_pred             CHHHhhhhh
Confidence            999986543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.97  E-value=1e-29  Score=252.01  Aligned_cols=229  Identities=18%  Similarity=0.189  Sum_probs=180.7

Q ss_pred             CCcceEEeccccceEEEEece----------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN----------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~----------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      +|+.++.||+|+||.||+|+.          ||+|++...       ......+.+.+|+.+++.++|        ||  
T Consensus         8 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~-------~~~~~~~~~~~e~~~l~~l~h--------~n--   70 (316)
T cd05108           8 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA-------TSPKANKEILDEAYVMASVDN--------PH--   70 (316)
T ss_pred             hceeeeeeecCCCceEEEEEEecCCCccceeEEEEecccc-------CCHHHHHHHHHHHHHHHhCCC--------CC--
Confidence            569999999999999999962          788887532       222344678899999999998        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHH
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLV  277 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~  277 (447)
                        |+++++++.                               ....++++||+.+| +|.+++.     ++...+..++.
T Consensus        71 --iv~~~g~~~-------------------------------~~~~~~v~e~~~~g-~l~~~l~~~~~~~~~~~~~~~~~  116 (316)
T cd05108          71 --VCRLLGICL-------------------------------TSTVQLITQLMPFG-CLLDYVREHKDNIGSQYLLNWCV  116 (316)
T ss_pred             --CCeEEEEEc-------------------------------CCCceeeeecCCCC-CHHHHHHhccccCCHHHHHHHHH
Confidence              999998843                               23478999999998 8888775     78889999999


Q ss_pred             HHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-EE------EEe
Q 013230          278 QVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-IF------FLD  350 (447)
Q Consensus       278 Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-~i------~~~  350 (447)
                      ||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+++...... +.      ...
T Consensus       117 qi~~~L~~LH~-~~iiH~dlkp~Nill~~~~--------------------~~kl~DfG~a~~~~~~~~~~~~~~~~~~~  175 (316)
T cd05108         117 QIAKGMNYLEE-RRLVHRDLAARNVLVKTPQ--------------------HVKITDFGLAKLLGADEKEYHAEGGKVPI  175 (316)
T ss_pred             HHHHHHHHHHh-cCeeccccchhheEecCCC--------------------cEEEccccccccccCCCcceeccCCccce
Confidence            99999999999 9999999999999999887                    79999999998764321 11      122


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc--
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d--  427 (447)
                      .|++||.+.+...+.+.|+|+ +|.+.+++++ +..|+.+..... +...+.....++.+...+.++.+++.+||..|  
T Consensus       176 ~y~apE~~~~~~~~~~~Di~s-lGv~l~el~t~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~  253 (316)
T cd05108         176 KWMALESILHRIYTHQSDVWS-YGVTVWELMTFGSKPYDGIPASE-ISSILEKGERLPQPPICTIDVYMIMVKCWMIDAD  253 (316)
T ss_pred             eecChHHhccCCCCchhhhHH-HHHHHHHHHcCCCCCCCCCCHHH-HHHHHhCCCCCCCCCCCCHHHHHHHHHHccCChh
Confidence            478999988877777889999 9999999876 778876543222 22333333445555667889999999999998  


Q ss_pred             ---CHHHHHcC
Q 013230          428 ---SAKEAIFD  435 (447)
Q Consensus       428 ---sa~elL~H  435 (447)
                         |+.+++.+
T Consensus       254 ~Rps~~~l~~~  264 (316)
T cd05108         254 SRPKFRELIIE  264 (316)
T ss_pred             hCcCHHHHHHH
Confidence               88888765

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.97  E-value=1.4e-29  Score=246.22  Aligned_cols=233  Identities=26%  Similarity=0.376  Sum_probs=178.0

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+.++.||.|+||.||+|++      +|+|++..+..      .......+.+|+.++++++|        ||    |++
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~------~~~~~~~~~~E~~~l~~l~h--------~~----i~~   63 (284)
T cd07860           2 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE------TEGVPSTAIREISLLKELNH--------PN----IVK   63 (284)
T ss_pred             ceeeeeecCCCceEEEEEEECCCCCEEEEEEcccccc------ccccchHHHHHHHHHHhcCC--------CC----Ccc
Confidence            68999999999999999973      89998765421      22233568899999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +++++.                              ..+..|+||||+. | +|..++.      +++..++.++.|++.
T Consensus        64 ~~~~~~------------------------------~~~~~~~v~e~~~-~-~l~~~~~~~~~~~l~~~~~~~~~~~i~~  111 (284)
T cd07860          64 LLDVIH------------------------------TENKLYLVFEFLH-Q-DLKKFMDASPLSGIPLPLIKSYLFQLLQ  111 (284)
T ss_pred             hhhhcc------------------------------cCCcEEEEeeccc-c-CHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence            999843                              2567999999996 5 7877764      789999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pe  356 (447)
                      ||+|||+ .|++||||||+||+++.++                    .+||+|||+++......     ......|++||
T Consensus       112 ~l~~lh~-~~i~H~~l~p~nill~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE  170 (284)
T cd07860         112 GLAFCHS-HRVLHRDLKPQNLLINTEG--------------------AIKLADFGLARAFGVPVRTYTHEVVTLWYRAPE  170 (284)
T ss_pred             HHHHHHH-CCeecCCCCHHHEEECCCC--------------------CEEEeeccchhhcccCccccccccccccccCCe
Confidence            9999999 9999999999999999987                    79999999987653321     11223478999


Q ss_pred             CCCCCCC-CchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh------------------ccCCCC---------
Q 013230          357 LFSGPKG-DKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL------------------KKTFDR---------  408 (447)
Q Consensus       357 lf~g~~~-~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~------------------~~~~~~---------  408 (447)
                      .+.+... ..+.|+|+ +|.+.+++++|..|+..........+....                  ...++.         
T Consensus       171 ~~~~~~~~~~~~Dv~s-lG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (284)
T cd07860         171 ILLGCKYYSTAVDIWS-LGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKWARQDFSKV  249 (284)
T ss_pred             EEecCCCCCcHHHHHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhhhhHHHHHHhhcccccccCHHHH
Confidence            8876443 45679999 899999999998877433211111111000                  001110         


Q ss_pred             CccchHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          409 SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       409 ~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                      ...+++++++||.+||+.|     |++++++||||
T Consensus       250 ~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~f  284 (284)
T cd07860         250 VPPLDEDGRDLLSQMLHYDPNKRISAKAALAHPFF  284 (284)
T ss_pred             cccCCHHHHHHHHHhcCCCcccCCCHHHHhcCCCC
Confidence            1246789999999999999     99999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.97  E-value=1.4e-29  Score=259.72  Aligned_cols=230  Identities=19%  Similarity=0.192  Sum_probs=177.0

Q ss_pred             CCcceEEeccccceEEEEece-----------eEEEEEecCCCcccccccccchHHHHHHHHHHHhcc-ccccCCCCCCC
Q 013230          133 DPENIVKVGEGTFGEAFLAGN-----------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN-HLRRNEGDTLN  200 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~-----------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~n  200 (447)
                      .|++.++||+|+||.||+|.+           ||+|++....       .....+.+.+|+.+++.++ |        ||
T Consensus        38 ~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~-------~~~~~~~~~~Ei~~l~~l~~H--------pn  102 (400)
T cd05105          38 GLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTA-------RSSEKQALMSELKIMTHLGPH--------LN  102 (400)
T ss_pred             ceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCC-------ChHHHHHHHHHHHHHHhcCCC--------CC
Confidence            458999999999999999862           8999876432       1223467899999999996 6        77


Q ss_pred             cccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------------
Q 013230          201 ACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------------  266 (447)
Q Consensus       201 ~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------------  266 (447)
                          ||++++++..                              .+.+|||||||.+| +|.+++.              
T Consensus       103 ----Iv~l~~~~~~------------------------------~~~~~lv~Ey~~~g-~L~~~l~~~~~~~~~~~~~~~  147 (400)
T cd05105         103 ----IVNLLGACTK------------------------------SGPIYIITEYCFYG-DLVNYLHKNRDNFLSRHPEKP  147 (400)
T ss_pred             ----eeeEEEEEcc------------------------------CCceEEEEEecCCC-cHHHHHHHhhhhhhccccccc
Confidence                9999998532                              46699999999998 8877642              


Q ss_pred             --------------------------------------------------------------------------------
Q 013230          267 --------------------------------------------------------------------------------  266 (447)
Q Consensus       267 --------------------------------------------------------------------------------  266 (447)
                                                                                                      
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  227 (400)
T cd05105         148 KKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLS  227 (400)
T ss_pred             cccccccCCCcccccccchhhhhhcccccccccccccccccchhhhhhhhhhhhhcccCcccccccccCcchhhHHHHHH
Confidence                                                                                            


Q ss_pred             ------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceee
Q 013230          267 ------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRI  340 (447)
Q Consensus       267 ------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~  340 (447)
                            +++..+..++.||+.||+|||+ .+|+||||||+|||++.++                    .+||+|||+++.
T Consensus       228 ~~~~~~l~~~~~~~~~~qi~~aL~~LH~-~~ivH~dikp~Nill~~~~--------------------~~kL~DfGla~~  286 (400)
T cd05105         228 DDGSEGLTTLDLLSFTYQVARGMEFLAS-KNCVHRDLAARNVLLAQGK--------------------IVKICDFGLARD  286 (400)
T ss_pred             hcccCCCCHHHHHHHHHHHHHHHHHHHh-CCeeCCCCChHhEEEeCCC--------------------EEEEEeCCccee
Confidence                  4566778899999999999999 9999999999999999886                    799999999986


Q ss_pred             cCCCC------E-EEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccc
Q 013230          341 NTGED------I-FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKD  412 (447)
Q Consensus       341 ~~~~g------~-i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~  412 (447)
                      .....      . .....|++||.+.+.....+.|||+ +|++.++++. +..|+............+......+.+...
T Consensus       287 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwS-lGvil~ellt~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (400)
T cd05105         287 IMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWS-YGILLWEIFSLGGTPYPGMIVDSTFYNKIKSGYRMAKPDHA  365 (400)
T ss_pred             ccccccccccCCcCCCcceEChhhhcCCCCCchhhHHH-HHHHHHHHHHCCCCCCcccchhHHHHHHHhcCCCCCCCccC
Confidence            53321      1 1112378999998877777889999 8999999886 777875543222223333323334445667


Q ss_pred             hHHHHHHHHHhcccc-----CHHHHHc
Q 013230          413 ERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       413 s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      +.++++++.+||..|     |+.++.+
T Consensus       366 ~~~l~~li~~cl~~dP~~RPt~~~l~~  392 (400)
T cd05105         366 TQEVYDIMVKCWNSEPEKRPSFLHLSD  392 (400)
T ss_pred             CHHHHHHHHHHCccCHhHCcCHHHHHH
Confidence            899999999999998     7776654

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.97  E-value=7.1e-30  Score=246.90  Aligned_cols=234  Identities=21%  Similarity=0.241  Sum_probs=186.4

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhcc-ccccCCCCCCCcccce
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN-HLRRNEGDTLNACTTF  205 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~n~~~~i  205 (447)
                      +|++.+.||+|+||.||+|..      +|+|++.....     ........+.+|+.++++++ |        +|    |
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~-----~~~~~~~~~~~e~~~~~~l~~~--------~~----i   64 (280)
T cd05581           2 DFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQL-----IKEKKVKYVKIEKEVLTRLNGH--------PG----I   64 (280)
T ss_pred             CceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhc-----cchHHHHHHHHHHHHHHhcccC--------CC----c
Confidence            469999999999999999973      89998765322     12223367889999999997 6        77    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTA  281 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~  281 (447)
                      +++++++.                              .++..|+||||+.+| +|.+++.    +++..++.++.|++.
T Consensus        65 ~~~~~~~~------------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~l~~~~~~~i~~ql~~  113 (280)
T cd05581          65 IKLYYTFQ------------------------------DEENLYFVLEYAPNG-ELLQYIRKYGSLDEKCTRFYAAEILL  113 (280)
T ss_pred             hhHHHHhc------------------------------CCceEEEEEcCCCCC-cHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            99988742                              256799999999987 9999886    899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE---------------
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI---------------  346 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~---------------  346 (447)
                      ||.|||+ +|++|+||||+||+++.++                    .++|+|||++.......+               
T Consensus       114 ~l~~Lh~-~~~~H~dl~~~ni~i~~~~--------------------~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (280)
T cd05581         114 ALEYLHS-KGIIHRDLKPENILLDKDM--------------------HIKITDFGTAKVLDPNSSPESNKGDATNIDSQI  172 (280)
T ss_pred             HHHHHHH-CCeeecCCCHHHeEECCCC--------------------CEEecCCccccccCCccccccCCCCCccccccc
Confidence            9999999 9999999999999999887                    799999999876543321               


Q ss_pred             ----------EEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHH
Q 013230          347 ----------FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDL  416 (447)
Q Consensus       347 ----------i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l  416 (447)
                                .....|++||.+.+.....+.|+|+ +|.+..+++.+..|+.............  ......+..+++.+
T Consensus       173 ~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~s-lG~~l~~l~~g~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  249 (280)
T cd05581         173 EKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWA-LGCIIYQMLTGKPPFRGSNEYLTFQKIL--KLEYSFPPNFPPDA  249 (280)
T ss_pred             cccccccccccCCccccCHHHhCCCCCChhhhHHH-HHHHHHHHHhCCCCCCCccHHHHHHHHH--hcCCCCCCccCHHH
Confidence                      1123367888887766666779999 8999999999999987654333333332  22333345678999


Q ss_pred             HHHHHHhcccc-----CH----HHHHcCCCC
Q 013230          417 RSLKKRLDKYN-----SA----KEAIFDPFF  438 (447)
Q Consensus       417 ~dLl~~mL~~d-----sa----~elL~HPff  438 (447)
                      .+||++||..|     |+    +|+++||||
T Consensus       250 ~~li~~~l~~~p~~R~~~~~~~~~ll~~~~~  280 (280)
T cd05581         250 KDLIEKLLVLDPQDRLGVNEGYDELKAHPFF  280 (280)
T ss_pred             HHHHHHHhcCCHhhCCCcccCHHHHhcCCCC
Confidence            99999999998     99    999999998

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.97  E-value=1.8e-29  Score=246.93  Aligned_cols=235  Identities=24%  Similarity=0.324  Sum_probs=180.5

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+..+.||+|+||.||+|.+      +|+|.++....      .......+.+|+.++++++|        ||    |+
T Consensus         6 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~------~~~~~~~~~~e~~~l~~l~h--------~n----i~   67 (293)
T cd07843           6 EYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKE------KEGFPITSLREINILLKLQH--------PN----IV   67 (293)
T ss_pred             hhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccc------cccchhhHHHHHHHHHhcCC--------CC----EE
Confidence            458999999999999999973      89998875432      22334567889999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      ++++++....                            .+..|+||||+. | +|.+++.     +++..++.++.||+.
T Consensus        68 ~~~~~~~~~~----------------------------~~~~~lv~e~~~-~-~L~~~~~~~~~~l~~~~~~~i~~qi~~  117 (293)
T cd07843          68 TVKEVVVGSN----------------------------LDKIYMVMEYVE-H-DLKSLMETMKQPFLQSEVKCLMLQLLS  117 (293)
T ss_pred             EEEEEEEecC----------------------------CCcEEEEehhcC-c-CHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence            9999865311                            267999999997 5 8877764     799999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pe  356 (447)
                      ||+|||+ .|++||||||+|||++.++                    .+||+|||+++.....     .......|++||
T Consensus       118 aL~~LH~-~~i~H~dl~p~nili~~~~--------------------~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE  176 (293)
T cd07843         118 GVAHLHD-NWILHRDLKTSNLLLNNRG--------------------ILKICDFGLAREYGSPLKPYTQLVVTLWYRAPE  176 (293)
T ss_pred             HHHHHHH-CCeeeccCCHHHEEECCCC--------------------cEEEeecCceeeccCCccccccccccccccCch
Confidence            9999999 9999999999999999987                    7999999999876543     122334489999


Q ss_pred             CCCCCCC-CchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh-------------------------------cc
Q 013230          357 LFSGPKG-DKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL-------------------------------KK  404 (447)
Q Consensus       357 lf~g~~~-~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~-------------------------------~~  404 (447)
                      .+.+... ....|+|+ +|.+.++++.|..|+..........+....                               ..
T Consensus       177 ~~~~~~~~~~~~Di~s-lG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (293)
T cd07843         177 LLLGAKEYSTAIDMWS-VGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPTEKIWPGFSELPGAKKKTFTKYPYNQLRK  255 (293)
T ss_pred             hhcCCccccchhhHHH-HHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchHHHHHhhccchhcccccccccchhhhc
Confidence            9876543 45569999 899999999998777543221111111000                               00


Q ss_pred             CCCCCccchHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          405 TFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       405 ~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                      .++. ..+++.+++||++||+.|     |+.|+|.||||
T Consensus       256 ~~~~-~~~~~~~~~li~~~l~~~p~~R~t~~ell~~~~f  293 (293)
T cd07843         256 KFPA-LSLSDNGFDLLNRLLTYDPAKRISAEDALKHPYF  293 (293)
T ss_pred             cccc-cCCChHHHHHHHHHhccCccccCCHHHHhcCCCC
Confidence            1111 015888999999999999     99999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.97  E-value=3.4e-29  Score=246.21  Aligned_cols=248  Identities=22%  Similarity=0.321  Sum_probs=179.5

Q ss_pred             hhhhhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCC
Q 013230          124 LLDLFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGD  197 (447)
Q Consensus       124 ~~~~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~  197 (447)
                      +.+..++|   +++++||+|+||.||+|++      ||+|.+.....      .........+|+.++++++|       
T Consensus         7 ~~~~~~~y---~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~------~~~~~~~~~~e~~~l~~l~h-------   70 (310)
T cd07865           7 FCDEVSKY---EKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENE------KEGFPITALREIKILQLLKH-------   70 (310)
T ss_pred             ccchhhhe---EEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCC------cCCchhHHHHHHHHHHhCCC-------
Confidence            33444555   9999999999999999973      99998864421      22233456789999999998       


Q ss_pred             CCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHH
Q 013230          198 TLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEA  272 (447)
Q Consensus       198 ~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~  272 (447)
                       ||    |+++++++...+..                      ........|+||||+. | +|.+++.     +++..+
T Consensus        71 -~~----iv~~~~~~~~~~~~----------------------~~~~~~~~~lv~e~~~-~-~l~~~l~~~~~~~~~~~~  121 (310)
T cd07865          71 -EN----VVNLIEICRTKATP----------------------YNRYKGSFYLVFEFCE-H-DLAGLLSNKNVKFTLSEI  121 (310)
T ss_pred             -CC----ccceEEEEeccccc----------------------ccCCCceEEEEEcCCC-c-CHHHHHHhcccCCCHHHH
Confidence             88    99999985542210                      0112356899999996 4 7776654     799999


Q ss_pred             HHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--------
Q 013230          273 RSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--------  344 (447)
Q Consensus       273 ~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--------  344 (447)
                      +.++.||+.||+|||+ .|++||||||+|||++.++                    .+||+|||+++.....        
T Consensus       122 ~~i~~qi~~al~~lH~-~~i~H~dl~p~nil~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~  180 (310)
T cd07865         122 KKVMKMLLNGLYYIHR-NKILHRDMKAANILITKDG--------------------ILKLADFGLARAFSLSKNSKPNRY  180 (310)
T ss_pred             HHHHHHHHHHHHHHHH-CCeeccCCCHHHEEECCCC--------------------cEEECcCCCcccccCCcccCCCCc
Confidence            9999999999999999 9999999999999999887                    7999999999765322        


Q ss_pred             -CEEEEecCCCCCCCCCCC-CCchHHHHHhhccCCcccccCCCCCChhHHHH---HHHHHH----------------hhc
Q 013230          345 -DIFFLDLSQDPELFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLV---YLVDML----------------LLK  403 (447)
Q Consensus       345 -g~i~~~~~~~pelf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~---~~~~~l----------------~~~  403 (447)
                       +.+....|++||.+.+.. ...+.|+|+ +|.+.++++++..|+.......   .+....                ...
T Consensus       181 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~s-lG~~l~el~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (310)
T cd07865         181 TNRVVTLWYRPPELLLGERDYGPPIDMWG-AGCIMAEMWTRSPIMQGNTEQHQLTLISQLCGSITPEVWPGVDKLELFKK  259 (310)
T ss_pred             cCcccCccccCcHHhcCCcccCchhhhHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhcccccchhhhhh
Confidence             112223478999886643 345679999 8999999999887764322111   111100                000


Q ss_pred             cCCCC-----------CccchHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          404 KTFDR-----------SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       404 ~~~~~-----------~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                      ..++.           ....+..++|||.+||..|     |++|+|+||||
T Consensus       260 ~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~h~~f  310 (310)
T cd07865         260 MELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALNHDFF  310 (310)
T ss_pred             ccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccCHHHHhcCCCC
Confidence            00010           1123578899999999999     99999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.97  E-value=2.5e-29  Score=241.23  Aligned_cols=234  Identities=22%  Similarity=0.285  Sum_probs=185.2

Q ss_pred             CcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+..+.||+|+||.||+|.      .+|+|++.....      .......+.+|+.+++.++|        +|    |++
T Consensus         2 y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~------~~~~~~~~~~e~~~~~~l~~--------~~----i~~   63 (264)
T cd06626           2 WQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDN------DPKTIKEIADEMKVLELLKH--------PN----LVK   63 (264)
T ss_pred             ceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECccc------chHHHHHHHHHHHHHHhCCC--------CC----hhh
Confidence            5889999999999999996      389998875532      23456788999999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++.+.                              ..+.+++|+||+.+| +|.+++.    +++..++.++.|++.||
T Consensus        64 ~~~~~~------------------------------~~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~i~~~i~~~l  112 (264)
T cd06626          64 YYGVEV------------------------------HREKVYIFMEYCSGG-TLEELLEHGRILDEHVIRVYTLQLLEGL  112 (264)
T ss_pred             eeeeEe------------------------------cCCEEEEEEecCCCC-cHHHHHhhcCCCChHHHHHHHHHHHHHH
Confidence            998743                              256799999999987 9999875    78999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE---------EEEecCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI---------FFLDLSQD  354 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~---------i~~~~~~~  354 (447)
                      +|||+ .||+||||+|+||+++.++                    .+||+|||++........         .....|++
T Consensus       113 ~~lh~-~~i~H~dl~~~nil~~~~~--------------------~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (264)
T cd06626         113 AYLHS-HGIVHRDIKPANIFLDHNG--------------------VIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMA  171 (264)
T ss_pred             HHHHH-CCcccCCCCHHHEEECCCC--------------------CEEEcccccccccCCCCCcccccccCCcCCcCccC
Confidence            99999 9999999999999999987                    799999999987543311         12234788


Q ss_pred             CCCCCCCC---CCchHHHHHhhccCCcccccCCCCCChhH-HHHHHHHHHh-hccCCCCCccchHHHHHHHHHhcccc--
Q 013230          355 PELFSGPK---GDKQFDTYRKMKKVTEDQWEGSFPKTNVL-WLVYLVDMLL-LKKTFDRSSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       355 pelf~g~~---~~~~~di~s~lg~~~~~~~~~~~p~~~~~-~~~~~~~~l~-~~~~~~~~~~~s~~l~dLl~~mL~~d--  427 (447)
                      ||.+.+..   ...+.|+|+ +|.+.++++.|..|+.... .......... ....++.....++.+++||++||+.+  
T Consensus       172 PE~~~~~~~~~~~~~~Dv~s-~G~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  250 (264)
T cd06626         172 PEVITGGKGKGHGRAADIWS-LGCVVLEMATGKRPWSELDNEFQIMFHVGAGHKPPIPDSLQLSPEGKDFLDRCLESDPK  250 (264)
T ss_pred             hhhccCCCCCCCCcccchHH-HHHHHHHHHhCCCCccCCcchHHHHHHHhcCCCCCCCcccccCHHHHHHHHHHccCCcc
Confidence            99887755   556669999 9999999999999986431 1111111111 11233333445899999999999998  


Q ss_pred             ---CHHHHHcCCCC
Q 013230          428 ---SAKEAIFDPFF  438 (447)
Q Consensus       428 ---sa~elL~HPff  438 (447)
                         |+.|+++|||+
T Consensus       251 ~R~~~~~i~~~~~~  264 (264)
T cd06626         251 KRPTASELLQHPFV  264 (264)
T ss_pred             cCCCHHHHhcCCCC
Confidence               99999999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.4e-29  Score=245.47  Aligned_cols=238  Identities=16%  Similarity=0.230  Sum_probs=184.8

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+.++.||+|+||.||+|.+      +|+|.+....       .......+.+|+.+++.+++..|     ||    +++
T Consensus         3 y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~-------~~~~~~~~~~e~~~l~~l~~~~~-----~~----vi~   66 (277)
T cd06917           3 YQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDT-------PDDDVSDIQREVALLSQLRQSQP-----PN----ITK   66 (277)
T ss_pred             hhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCC-------CchhHHHHHHHHHHHHHhccCCC-----CC----eee
Confidence            58889999999999999984      8999876432       22234567899999999984222     66    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~  284 (447)
                      +++++..                              +...|+||||+.+| +|.+++.   +++..+..++.|++.||.
T Consensus        67 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~l~~~~~~~i~~~i~~~l~  115 (277)
T cd06917          67 YYGSYLK------------------------------GPRLWIIMEYAEGG-SVRTLMKAGPIAEKYISVIIREVLVALK  115 (277)
T ss_pred             Eeeeeee------------------------------CCEEEEEEecCCCC-cHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            9998543                              46689999999987 9998876   899999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----EEEecCCCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----FFLDLSQDPELFS  359 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i~~~~~~~pelf~  359 (447)
                      |||+ .||+||||+|+||+++.++                    .++|+|||++........     .....|++||.+.
T Consensus       116 ~lh~-~~i~H~dl~p~ni~i~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~  174 (277)
T cd06917         116 YIHK-VGVIHRDIKAANILVTNTG--------------------NVKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVIT  174 (277)
T ss_pred             HHHh-CCcccCCcCHHHEEEcCCC--------------------CEEEccCCceeecCCCccccccccCCcceeCHHHhc
Confidence            9999 9999999999999999987                    799999999987644321     2223478999886


Q ss_pred             CCC-CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc-----CHHH
Q 013230          360 GPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN-----SAKE  431 (447)
Q Consensus       360 g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d-----sa~e  431 (447)
                      +.. .....|+|+ +|.+.++++.|..|+.............  ....+.  ....+.++.+|+.+||..|     |+.|
T Consensus       175 ~~~~~~~~~Dv~s-lG~~l~~ll~g~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~  251 (277)
T cd06917         175 EGKYYDTKADIWS-LGITIYEMATGNPPYSDVDAFRAMMLIP--KSKPPRLEDNGYSKLLREFVAACLDEEPKERLSAEE  251 (277)
T ss_pred             cCCccccchhHHH-HHHHHHHHHhCCCCCCCCChhhhhhccc--cCCCCCCCcccCCHHHHHHHHHHcCCCcccCcCHHH
Confidence            533 345669999 8999999999999986543322221111  111111  1236789999999999998     9999


Q ss_pred             HHcCCCCCCCC
Q 013230          432 AIFDPFFSDLI  442 (447)
Q Consensus       432 lL~HPff~~~~  442 (447)
                      ++.||||+...
T Consensus       252 il~~~~~~~~~  262 (277)
T cd06917         252 LLKSKWIKAHS  262 (277)
T ss_pred             HhhChHhhccc
Confidence            99999998764

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.97  E-value=4.1e-29  Score=247.62  Aligned_cols=238  Identities=19%  Similarity=0.228  Sum_probs=182.9

Q ss_pred             cceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      ...++||+|+||.||+|++      +|+|++.....     ........+.+|+.+++.++|        +|    ++++
T Consensus        24 ~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~-----~~~~~~~~~~~E~~~l~~l~h--------~~----iv~~   86 (313)
T cd06633          24 VGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGK-----QTNEKWQDIIKEVKFLQQLKH--------PN----TIEY   86 (313)
T ss_pred             hcceeeccCCCeEEEEEEECCCCcEEEEEEEecccc-----CchHHHHHHHHHHHHHHhCCC--------CC----CccE
Confidence            6678999999999999973      89998875422     222334567899999999988        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~gL  283 (447)
                      ++++..                              .+..|+||||+. | +|.+++.     +++..+..++.||+.||
T Consensus        87 ~~~~~~------------------------------~~~~~lv~e~~~-~-~l~~~l~~~~~~l~~~~~~~~~~qi~~al  134 (313)
T cd06633          87 KGCYLK------------------------------EHTAWLVMEYCL-G-SASDLLEVHKKPLQEVEIAAITHGALQGL  134 (313)
T ss_pred             EEEEEe------------------------------CCEEEEEEecCC-C-CHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            998543                              566899999996 5 6666553     78999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-EEEEecCCCCCCCC---
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-IFFLDLSQDPELFS---  359 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-~i~~~~~~~pelf~---  359 (447)
                      .|||+ .||+||||||+||+++.++                    .+||+|||++....... ......|++||.+.   
T Consensus       135 ~~LH~-~gi~H~dl~p~nili~~~~--------------------~~kL~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~  193 (313)
T cd06633         135 AYLHS-HNMIHRDIKAGNILLTEPG--------------------QVKLADFGSASKSSPANSFVGTPYWMAPEVILAMD  193 (313)
T ss_pred             HHHHH-CCeecCCCChhhEEECCCC--------------------CEEEeecCCCcccCCCCCccccccccChhhccccC
Confidence            99999 9999999999999999887                    79999999987644322 22233478999884   


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      +...+...|+|+ +|.+.++++.|..|+........................++..+++|+.+||+++     ++.++++
T Consensus       194 ~~~~~~~sDv~s-lGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rp~~~~~l~  272 (313)
T cd06633         194 EGQYDGKVDVWS-LGITCIELAERKPPLFNMNAMSALYHIAQNDSPTLQSNEWTDSFRGFVDYCLQKIPQERPASAELLR  272 (313)
T ss_pred             CCCCCchhhHHH-HHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            234555679999 8999999999999986643333333332211111112346788999999999999     9999999


Q ss_pred             CCCCCCCCC
Q 013230          435 DPFFSDLIV  443 (447)
Q Consensus       435 HPff~~~~~  443 (447)
                      ||||+....
T Consensus       273 ~~~~~~~~~  281 (313)
T cd06633         273 HDFVRRDRP  281 (313)
T ss_pred             CcccCCCch
Confidence            999987543

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.97  E-value=2.1e-29  Score=243.43  Aligned_cols=229  Identities=17%  Similarity=0.114  Sum_probs=179.3

Q ss_pred             CCcceEEeccccceEEEEec---------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccc
Q 013230          133 DPENIVKVGEGTFGEAFLAG---------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACT  203 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~---------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~  203 (447)
                      +|++.+.||+|+||.||+|.         .||+|.+....       .......+.+|+.++++++|        ||   
T Consensus         6 ~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~-------~~~~~~~~~~e~~~l~~l~h--------~~---   67 (266)
T cd05064           6 SIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGC-------SDKQRRGFLAEALTLGQFDH--------SN---   67 (266)
T ss_pred             HeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCC-------CHHHHHHHHHHHHHHhcCCC--------CC---
Confidence            45899999999999999984         38888876432       12234568899999999988        88   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHH
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQ  278 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Q  278 (447)
                       |+++++++..                              .+..|+||||+.+| +|.+++.     +++..++.++.|
T Consensus        68 -iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~l~~~~~~~~~~~  115 (266)
T cd05064          68 -IVRLEGVITR------------------------------GNTMMIVTEYMSNG-ALDSFLRKHEGQLVAGQLMGMLPG  115 (266)
T ss_pred             -cCeEEEEEec------------------------------CCCcEEEEEeCCCC-cHHHHHHhCCCCCCHHHHHHHHHH
Confidence             9999998532                              56799999999988 9998875     789999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE------EEEecC
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI------FFLDLS  352 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~------i~~~~~  352 (447)
                      |+.||+|||+ +|++||||||+|||++.++                    .+||+|||.+........      .....|
T Consensus       116 i~~al~~lH~-~~iiH~dikp~nili~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y  174 (266)
T cd05064         116 LASGMKYLSE-MGYVHKGLAAHKVLVNSDL--------------------VCKISGFRRLQEDKSEAIYTTMSGKSPVLW  174 (266)
T ss_pred             HHHHHHHHHH-CCEeeccccHhhEEEcCCC--------------------cEEECCCcccccccccchhcccCCCCceee
Confidence            9999999999 9999999999999999887                    799999998765432210      011247


Q ss_pred             CCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----
Q 013230          353 QDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       353 ~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      ++||.+.+...+...|||+ +|.+.++++. |..|+........... +......+.+...+..+.+++.+|+..+    
T Consensus       175 ~aPE~~~~~~~~~~~Di~s-lG~~l~ell~~g~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~R  252 (266)
T cd05064         175 AAPEAIQYHHFSSASDVWS-FGIVMWEVMSYGERPYWDMSGQDVIKA-VEDGFRLPAPRNCPNLLHQLMLDCWQKERGER  252 (266)
T ss_pred             cCHHHHhhCCccchhHHHH-HHHHHHHHhcCCCCCcCcCCHHHHHHH-HHCCCCCCCCCCCCHHHHHHHHHHcCCCchhC
Confidence            8999998877777889999 8999888654 7888865433332222 2222344555678899999999999998    


Q ss_pred             -CHHHHHc
Q 013230          428 -SAKEAIF  434 (447)
Q Consensus       428 -sa~elL~  434 (447)
                       |++++++
T Consensus       253 P~~~~i~~  260 (266)
T cd05064         253 PRFSQIHS  260 (266)
T ss_pred             CCHHHHHH
Confidence             8888764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.97  E-value=2.9e-29  Score=243.78  Aligned_cols=233  Identities=23%  Similarity=0.342  Sum_probs=179.7

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+.+++||.|+||.||+|++      ||+|++.....       ......+.+|+.+++.++|        +|    |+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-------~~~~~~~~~E~~~l~~l~h--------~~----i~   61 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAE-------EGTPSTAIREISLMKELKH--------EN----IV   61 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEeccccc-------ccchHHHHHHHHHHHhhcC--------CC----Ee
Confidence            368999999999999999984      89998875421       2233567789999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------CCHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------LNINEARSLLVQV  279 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------l~~~~~~~i~~Qi  279 (447)
                      ++++.+..                              .+..|+||||+. | +|.+++.       +++..++.++.||
T Consensus        62 ~~~~~~~~------------------------------~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~~~~~~~~~~~qi  109 (284)
T cd07836          62 RLHDVIHT------------------------------ENKLMLVFEYMD-K-DLKKYMDTHGVRGALDPNTVKSFTYQL  109 (284)
T ss_pred             eeeeeEee------------------------------CCcEEEEEecCC-c-cHHHHHHhcCCCCCcCHHHHHHHHHHH
Confidence            99998643                              466899999998 5 7777654       7899999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQD  354 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~  354 (447)
                      +.||+|||+ .|++||||||+||+++.++                    .++|+|||+++.....     .......|++
T Consensus       110 ~~~l~~lH~-~~i~h~dl~p~ni~~~~~~--------------------~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~  168 (284)
T cd07836         110 LKGIAFCHE-NRVLHRDLKPQNLLINKRG--------------------ELKLADFGLARAFGIPVNTFSNEVVTLWYRA  168 (284)
T ss_pred             HHHHHHHHH-CCeeeCCCCHHHEEECCCC--------------------cEEEeecchhhhhcCCccccccccccccccC
Confidence            999999999 9999999999999999887                    7999999999754322     1222334789


Q ss_pred             CCCCCCCC-CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh------------------ccCCCC-------
Q 013230          355 PELFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL------------------KKTFDR-------  408 (447)
Q Consensus       355 pelf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~------------------~~~~~~-------  408 (447)
                      ||.+.+.. ...+.|+|+ +|.+.+++++|..|+............+..                  ...++.       
T Consensus       169 PE~~~~~~~~~~~~Dv~s-lG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (284)
T cd07836         169 PDVLLGSRTYSTSIDIWS-VGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTESTWPGISQLPEYKPTFPRYPPQDLQ  247 (284)
T ss_pred             hHHhcCCCCCCcHHHHHH-HHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhHHHHhcCchhcccccCCChHHHH
Confidence            99886643 355679999 899999999999887644322221111100                  001110       


Q ss_pred             --CccchHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          409 --SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       409 --~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                        ....++++++++.+||+.|     |++|+++||||
T Consensus       248 ~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~~~~f  284 (284)
T cd07836         248 QLFPHADPLGIDLLHRLLQLNPELRISAHDALQHPWF  284 (284)
T ss_pred             HHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhcCCCC
Confidence              1235788999999999999     99999999998

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=1.2e-31  Score=243.92  Aligned_cols=240  Identities=21%  Similarity=0.283  Sum_probs=176.6

Q ss_pred             cCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          131 YSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       131 y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      -.+|++++++|+|.|++||.|.+      +++|+++.-           ....+.+|+.||+.|...       ||    
T Consensus        37 ~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPV-----------kkkKIkREikIL~nL~gg-------~N----   94 (338)
T KOG0668|consen   37 QDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPV-----------KKKKIKREIKILQNLRGG-------PN----   94 (338)
T ss_pred             cchHHHHHHHcCccHhhHhcccccCCCceEEEeeechH-----------HHHHHHHHHHHHHhccCC-------CC----
Confidence            34569999999999999999983      778876522           225689999999999841       67    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-CCHHHHHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-LNINEARSLLVQVTAGL  283 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-l~~~~~~~i~~Qil~gL  283 (447)
                      ||+++|+..  ++                          ......+++||.++- |+..+.. ++...++.++.|++.||
T Consensus        95 Ii~L~DiV~--Dp--------------------------~SktpaLiFE~v~n~-Dfk~ly~tl~d~dIryY~~elLkAL  145 (338)
T KOG0668|consen   95 IIKLLDIVK--DP--------------------------ESKTPSLIFEYVNNT-DFKQLYPTLTDYDIRYYIYELLKAL  145 (338)
T ss_pred             eeehhhhhc--Cc--------------------------cccCchhHhhhhccc-cHHHHhhhhchhhHHHHHHHHHHHH
Confidence            999999832  11                          124467899999864 8887766 99999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPELFS  359 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pelf~  359 (447)
                      .|||+ .||+|||+||.|++|+....                   .++|+|+|+|......-    -+..-.+.|||+.-
T Consensus       146 dyCHS-~GImHRDVKPhNvmIdh~~r-------------------kLrlIDWGLAEFYHp~~eYnVRVASRyfKGPELLV  205 (338)
T KOG0668|consen  146 DYCHS-MGIMHRDVKPHNVMIDHELR-------------------KLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLV  205 (338)
T ss_pred             hHHHh-cCcccccCCcceeeechhhc-------------------eeeeeecchHhhcCCCceeeeeeehhhcCCchhee
Confidence            99999 99999999999999999875                   89999999999877652    13344577888774


Q ss_pred             C-CCCCchHHHHHhhccCCcccccCCCCCChh----H-------------HHHHHH-----------HHHhhc--cC---
Q 013230          360 G-PKGDKQFDTYRKMKKVTEDQWEGSFPKTNV----L-------------WLVYLV-----------DMLLLK--KT---  405 (447)
Q Consensus       360 g-~~~~~~~di~s~lg~~~~~~~~~~~p~~~~----~-------------~~~~~~-----------~~l~~~--~~---  405 (447)
                      . ..++..+|+|+ +|+....+.-...||...    .             ...|+.           +++-..  +.   
T Consensus       206 dy~~YDYSLD~WS-~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~i~~~~~rk~w~~  284 (338)
T KOG0668|consen  206 DYQMYDYSLDMWS-LGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQFEDILGRHSRKPWSR  284 (338)
T ss_pred             echhccccHHHHH-HHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHccCCChhHhhHhhccccccHHH
Confidence            4 34556668888 888776666555555321    0             001111           111000  00   


Q ss_pred             CCC--C-ccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCC
Q 013230          406 FDR--S-SKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       406 ~~~--~-~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~  442 (447)
                      |-.  . .-.++++.|||.++|.+|     ||+|++.||||....
T Consensus       285 Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEam~HpyF~~~~  329 (338)
T KOG0668|consen  285 FINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEAMAHPYFAPVR  329 (338)
T ss_pred             hCCccccccCChHHHHHHHHHHhhccccccchHHHhcCchHHHHH
Confidence            111  1 135799999999999999     999999999998653

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.97  E-value=3.3e-29  Score=247.27  Aligned_cols=238  Identities=19%  Similarity=0.226  Sum_probs=183.2

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+..+.||+|+||.||+|++      ||+|++.....     ........+.+|+.+++.++|        ||    |++
T Consensus        17 y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~-----~~~~~~~~~~~Ei~~l~~l~h--------~n----iv~   79 (307)
T cd06607          17 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGK-----QSNEKWQDIIKEVRFLQQLRH--------PN----TIE   79 (307)
T ss_pred             hhhheeecCCCCeEEEEEEEcCCCcEEEEEEEecccc-----CcHHHHHHHHHHHHHHHhCCC--------CC----EEE
Confidence            48899999999999999963      99998864422     222334568899999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +.+++..                              ++..|+||||+. | +|.+++.     +++..+..++.||+.|
T Consensus        80 ~~~~~~~------------------------------~~~~~lv~e~~~-g-~l~~~~~~~~~~l~~~~~~~~~~ql~~~  127 (307)
T cd06607          80 YKGCYLR------------------------------EHTAWLVMEYCL-G-SASDILEVHKKPLQEVEIAAICHGALQG  127 (307)
T ss_pred             EEEEEEe------------------------------CCeEEEEHHhhC-C-CHHHHHHHcccCCCHHHHHHHHHHHHHH
Confidence            9998643                              566899999997 4 5555443     8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-EEEEecCCCCCCCCC-
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-IFFLDLSQDPELFSG-  360 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-~i~~~~~~~pelf~g-  360 (447)
                      |.|||+ .||+||||+|+||+++.++                    .+||+|||++....... ......|++||.+.+ 
T Consensus       128 L~~LH~-~~i~H~dl~p~nIl~~~~~--------------------~~kL~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~  186 (307)
T cd06607         128 LAYLHS-HERIHRDIKAGNILLTEPG--------------------TVKLADFGSASLVSPANSFVGTPYWMAPEVILAM  186 (307)
T ss_pred             HHHHHH-CCceecCCCcccEEECCCC--------------------CEEEeecCcceecCCCCCccCCccccCceeeecc
Confidence            999999 9999999999999999987                    79999999998765432 222334789998742 


Q ss_pred             --CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHH
Q 013230          361 --PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAI  433 (447)
Q Consensus       361 --~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL  433 (447)
                        .......|+|+ +|.+.+++++|..|+.+................-.....++.++++||.+||..|     |+.+++
T Consensus       187 ~~~~~~~~sDv~s-~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il  265 (307)
T cd06607         187 DEGQYDGKVDVWS-LGITCIELAERKPPLFNMNAMSALYHIAQNDSPTLSSNDWSDYFRNFVDSCLQKIPQDRPSSEELL  265 (307)
T ss_pred             CCCCCCcccchHH-HHHHHHHHHcCCCCCCCccHHHHHHHHhcCCCCCCCchhhCHHHHHHHHHHhcCChhhCcCHHHHh
Confidence              23445669999 8999999999999987654333322222111111112346789999999999998     999999


Q ss_pred             cCCCCCCCC
Q 013230          434 FDPFFSDLI  442 (447)
Q Consensus       434 ~HPff~~~~  442 (447)
                      .||||..-.
T Consensus       266 ~~~~~~~~~  274 (307)
T cd06607         266 KHRFVLRER  274 (307)
T ss_pred             cChhhcccC
Confidence            999998654

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.97  E-value=1.3e-29  Score=247.08  Aligned_cols=237  Identities=19%  Similarity=0.199  Sum_probs=184.4

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+++++||+|+||+||+|.+      +|+|++....       .......+.+|+.+++.++|        ||    |+
T Consensus         6 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------~~----i~   66 (284)
T cd06620           6 DLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGA-------KSSVRKQILRELQIMHECRS--------PY----IV   66 (284)
T ss_pred             HHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecC-------cchHHHHHHHHHHHHHHcCC--------CC----cc
Confidence            469999999999999999873      8899876431       22344678899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++.+..                              .+.+|+||||+.+| +|..++.    +++..++.++.|++.|
T Consensus        67 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~i~~~  115 (284)
T cd06620          67 SFYGAFLN------------------------------ENNICMCMEFMDCG-SLDRIYKKGGPIPVEILGKIAVAVVEG  115 (284)
T ss_pred             eEeeeEec------------------------------CCEEEEEEecCCCC-CHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence            99998543                              46799999999988 9988875    7899999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC---EEEEecCCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED---IFFLDLSQDPELFS  359 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g---~i~~~~~~~pelf~  359 (447)
                      |.|||+.++++||||||+||+++.++                    .++|+|||+++......   ......|++||.+.
T Consensus       116 l~~LH~~~~i~H~dl~p~nil~~~~~--------------------~~~l~d~gl~~~~~~~~~~~~~~~~~~~aPE~~~  175 (284)
T cd06620         116 LTYLYNVHRIMHRDIKPSNILVNSRG--------------------QIKLCDFGVSGELINSIADTFVGTSTYMSPERIQ  175 (284)
T ss_pred             HHHHHHhcCeeccCCCHHHEEECCCC--------------------cEEEccCCcccchhhhccCccccCcccCCHHHHc
Confidence            99999647999999999999999887                    79999999987543221   12234478999887


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHH-----------HHHHHHHHhhccCCCC-CccchHHHHHHHHHhcccc
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLW-----------LVYLVDMLLLKKTFDR-SSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~-----------~~~~~~~l~~~~~~~~-~~~~s~~l~dLl~~mL~~d  427 (447)
                      +.......|+|+ +|.+.+++.+|..|+.....           ......... ...... ....+.++.+|+.+||+.|
T Consensus       176 ~~~~~~~~Di~s-lG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~d  253 (284)
T cd06620         176 GGKYTVKSDVWS-LGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQ-EPPPRLPSSDFPEDLRDFVDACLLKD  253 (284)
T ss_pred             cCCCCccchHHH-HHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhh-ccCCCCCchhcCHHHHHHHHHHhcCC
Confidence            766666779999 89999999999988864221           112222221 111111 1236789999999999999


Q ss_pred             -----CHHHHHcCCCCCCC
Q 013230          428 -----SAKEAIFDPFFSDL  441 (447)
Q Consensus       428 -----sa~elL~HPff~~~  441 (447)
                           |++|+++||||..-
T Consensus       254 p~~Rpt~~e~~~~~~~~~~  272 (284)
T cd06620         254 PTERPTPQQLCAMPPFIQA  272 (284)
T ss_pred             cccCcCHHHHhcCcccccc
Confidence                 99999999999654

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=2.7e-29  Score=241.99  Aligned_cols=237  Identities=22%  Similarity=0.282  Sum_probs=182.6

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCccccee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~iv  206 (447)
                      |++.+.||+|+||.||+|++      +|+|++....         ...+.+.+|+.+++++ +|        +|    |+
T Consensus         8 y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~---------~~~~~~~~e~~~l~~~~~h--------~~----i~   66 (275)
T cd06608           8 FELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIE---------DEEEEIKEEYNILRKYSNH--------PN----IA   66 (275)
T ss_pred             eeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCc---------hhHHHHHHHHHHHHHhcCC--------CC----hh
Confidence            49999999999999999984      8889876432         1235688999999998 56        77    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQ  278 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Q  278 (447)
                      ++++++.....                        ......+|+||||+.+| +|.+++.        +++..++.++.|
T Consensus        67 ~~~~~~~~~~~------------------------~~~~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~~q  121 (275)
T cd06608          67 TFYGAFIKKNP------------------------PGNDDQLWLVMELCGGG-SVTDLVKGLRKKGKRLKEEWIAYILRE  121 (275)
T ss_pred             eEEEEEEecCC------------------------CCcceEEEEEEEcCCCC-cHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence            99999764221                        01245689999999987 8887653        789999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCC
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQ  353 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~  353 (447)
                      ++.||+|||+ .|++|+||+|+||+++.++                    .+||+|||++......     .......|+
T Consensus       122 l~~al~~lH~-~~i~H~~l~p~ni~~~~~~--------------------~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~  180 (275)
T cd06608         122 TLRGLAYLHE-NKVIHRDIKGQNILLTKNA--------------------EVKLVDFGVSAQLDSTLGRRNTFIGTPYWM  180 (275)
T ss_pred             HHHHHHHHhc-CCcccCCCCHHHEEEccCC--------------------eEEECCCccceecccchhhhcCcccccccc
Confidence            9999999999 9999999999999999887                    7999999998765432     222334588


Q ss_pred             CCCCCCCCC-----CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc-cCCCCCccchHHHHHHHHHhcccc
Q 013230          354 DPELFSGPK-----GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK-KTFDRSSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       354 ~pelf~g~~-----~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~-~~~~~~~~~s~~l~dLl~~mL~~d  427 (447)
                      +||++.+..     .+.+.|+|+ +|.+.++++++..|+........+....... .....+..++.++++||++||..|
T Consensus       181 aPE~~~~~~~~~~~~~~~~Dv~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~d  259 (275)
T cd06608         181 APEVIACDEQPDASYDARSDVWS-LGITAIELADGKPPLCDMHPMRALFKIPRNPPPTLKSPENWSKKFNDFISECLIKN  259 (275)
T ss_pred             CHhHhcccccccCCccccccHHH-hHHHHHHHHhCCCCccccchHHHHHHhhccCCCCCCchhhcCHHHHHHHHHHhhcC
Confidence            999875432     334569999 9999999999999987543333333332211 122223346789999999999999


Q ss_pred             -----CHHHHHcCCCC
Q 013230          428 -----SAKEAIFDPFF  438 (447)
Q Consensus       428 -----sa~elL~HPff  438 (447)
                           |+.|+++|||+
T Consensus       260 p~~Rpt~~~ll~~~~~  275 (275)
T cd06608         260 YEQRPFMEELLEHPFI  275 (275)
T ss_pred             hhhCcCHHHHhcCCCC
Confidence                 99999999996

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.96  E-value=2.6e-29  Score=241.42  Aligned_cols=228  Identities=18%  Similarity=0.236  Sum_probs=180.9

Q ss_pred             CCcceEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          133 DPENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      +|++++.||+|+||.||+|+     .+|+|.+....         ...+.+.+|+.++++++|        ||    |++
T Consensus         5 ~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~---------~~~~~~~~e~~~l~~l~h--------~~----i~~   63 (256)
T cd05113           5 DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS---------MSEDEFIEEAKVMMKLSH--------EK----LVQ   63 (256)
T ss_pred             HeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCc---------ccHHHHHHHHHHHhcCCC--------CC----eee
Confidence            35899999999999999996     38999876331         123568999999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++..                              .+.+|++|||+.+| +|.+++.     +++..++.++.||+.|
T Consensus        64 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~l~~~i~~~~~~~~~~~~~~~~~~i~~~  112 (256)
T cd05113          64 LYGVCTK------------------------------QRPIYIVTEYMSNG-CLLNYLREHGKRFQPSQLLEMCKDVCEG  112 (256)
T ss_pred             EEEEEcc------------------------------CCCcEEEEEcCCCC-cHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            9998532                              45589999999988 8998874     7999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE------EEEecCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI------FFLDLSQDPE  356 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~------i~~~~~~~pe  356 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+++.......      .....|++||
T Consensus       113 l~~lH~-~~i~H~dl~p~nili~~~~--------------------~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~~pe  171 (256)
T cd05113         113 MAYLES-KQFIHRDLAARNCLVDDQG--------------------CVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPE  171 (256)
T ss_pred             HHHHHh-CCeeccccCcceEEEcCCC--------------------CEEECCCccceecCCCceeecCCCccChhhCCHH
Confidence            999999 9999999999999999887                    799999999986544321      1112378999


Q ss_pred             CCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      .+.+.......|+|+ +|.+.+++++ +..|+............. .....+.+...+..+++++.+||..|     |+.
T Consensus       172 ~~~~~~~~~~~Di~s-lG~~l~~l~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~  249 (256)
T cd05113         172 VLLYSKFSSKSDVWA-FGVLMWEVYSLGKMPYERFNNSETVEKVS-QGLRLYRPHLASEKVYAIMYSCWHEKAEERPTFQ  249 (256)
T ss_pred             HHhcCcccchhHHHH-HHHHHHHHhcCCCCCcCcCCHHHHHHHHh-cCCCCCCCCCCCHHHHHHHHHHcCCCcccCCCHH
Confidence            998767777789999 9999999998 778875443333222222 22333334567899999999999998     999


Q ss_pred             HHHcC
Q 013230          431 EAIFD  435 (447)
Q Consensus       431 elL~H  435 (447)
                      +++.+
T Consensus       250 ~ll~~  254 (256)
T cd05113         250 QLLSS  254 (256)
T ss_pred             HHHHh
Confidence            98864

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.96  E-value=3.9e-29  Score=239.62  Aligned_cols=227  Identities=19%  Similarity=0.240  Sum_probs=179.4

Q ss_pred             CCcceEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          133 DPENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      +|++.+.||+|+||.||+|.     .+|+|.+....         .....+.+|+.++++++|        ||    |++
T Consensus         5 ~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~---------~~~~~~~~e~~~l~~l~h--------~~----i~~   63 (256)
T cd05114           5 ELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGA---------MSEEDFIEEAKVMMKLSH--------PK----LVQ   63 (256)
T ss_pred             HcEEeeEecCCcCceEEEEEeccCceEEEEecccCC---------ccHHHHHHHHHHHHHCCC--------CC----cee
Confidence            35889999999999999986     38888765321         123568899999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++..                              .+..|+||||+.+| +|.+++.     +++..++.++.|++.|
T Consensus        64 ~~~~~~~------------------------------~~~~~iv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~i~~~  112 (256)
T cd05114          64 LYGVCTQ------------------------------QKPLYIVTEFMENG-CLLNYLRQRQGKLSKDMLLSMCQDVCEG  112 (256)
T ss_pred             EEEEEcc------------------------------CCCEEEEEEcCCCC-cHHHHHHhCccCCCHHHHHHHHHHHHHH
Confidence            9998532                              46699999999988 8988874     7889999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------EEEEecCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------IFFLDLSQDPE  356 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------~i~~~~~~~pe  356 (447)
                      |+|||+ .||+||||||+||+++.++                    .+||+|||+++......      ......|++||
T Consensus       113 l~~lH~-~~i~H~dl~p~ni~i~~~~--------------------~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE  171 (256)
T cd05114         113 MEYLER-NSFIHRDLAARNCLVSSTG--------------------VVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPE  171 (256)
T ss_pred             HHHHHH-CCccccccCcceEEEcCCC--------------------eEEECCCCCccccCCCceeccCCCCCchhhCChh
Confidence            999999 9999999999999999886                    79999999998654321      11122488999


Q ss_pred             CCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      .+.+.....+.|+|+ +|.+.+++++ +..|+...........+.. ......+...+.++.+|+.+|+..|     |++
T Consensus       172 ~~~~~~~~~~~Di~s-~G~~l~el~~~g~~p~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~  249 (256)
T cd05114         172 VFNFSKYSSKSDVWS-FGVLMWEVFTEGKMPFEKKSNYEVVEMISR-GFRLYRPKLASMTVYEVMYSCWHEKPEGRPTFA  249 (256)
T ss_pred             hcccCccchhhhhHH-HHHHHHHHHcCCCCCCCCCCHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHHccCCcccCcCHH
Confidence            998877777789999 8999999998 7788765443333333322 2223334557889999999999998     899


Q ss_pred             HHHc
Q 013230          431 EAIF  434 (447)
Q Consensus       431 elL~  434 (447)
                      ++++
T Consensus       250 ~l~~  253 (256)
T cd05114         250 ELLR  253 (256)
T ss_pred             HHHH
Confidence            8875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.96  E-value=2.1e-29  Score=252.08  Aligned_cols=244  Identities=22%  Similarity=0.268  Sum_probs=181.9

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.++||+|+||.||+|++      ||+|++...       ........+.+|+.+++.++|        +|    |+
T Consensus         6 ~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~-------~~~~~~~~~~~E~~~l~~l~h--------~n----iv   66 (336)
T cd07849           6 RYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPF-------EHQTFCQRTLREIKILRRFKH--------EN----II   66 (336)
T ss_pred             ceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEeccc-------ccchhHHHHHHHHHHHHhCCC--------CC----cC
Confidence            459999999999999999963      999987532       122344667889999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGL  283 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL  283 (447)
                      ++++++....                         ......+|++|||+. | +|.+++.   +++..++.++.||+.||
T Consensus        67 ~~~~~~~~~~-------------------------~~~~~~~~lv~e~~~-~-~l~~~~~~~~l~~~~~~~i~~ql~~aL  119 (336)
T cd07849          67 GILDIIRPPS-------------------------FESFNDVYIVQELME-T-DLYKLIKTQHLSNDHIQYFLYQILRGL  119 (336)
T ss_pred             chhheeeccc-------------------------ccccceEEEEehhcc-c-CHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            9998743211                         112345899999997 4 7887766   89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC--------EEEEecCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED--------IFFLDLSQDP  355 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g--------~i~~~~~~~p  355 (447)
                      +|||+ .||+||||||+|||++.++                    .+||+|||+++......        ......|++|
T Consensus       120 ~~LH~-~~ivH~dlkp~Nill~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aP  178 (336)
T cd07849         120 KYIHS-ANVLHRDLKPSNLLLNTNC--------------------DLKICDFGLARIADPEHDHTGFLTEYVATRWYRAP  178 (336)
T ss_pred             HHHHh-CCeeccCCCHHHEEECCCC--------------------CEEECcccceeeccccccccCCcCCcCcCCCccCh
Confidence            99999 9999999999999999887                    79999999998754321        1223347899


Q ss_pred             CCCCC-CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHH---HHHH-------------------hhc----cCCC-
Q 013230          356 ELFSG-PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYL---VDML-------------------LLK----KTFD-  407 (447)
Q Consensus       356 elf~g-~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~---~~~l-------------------~~~----~~~~-  407 (447)
                      |.+.+ .....+.|+|+ +|.+.++++.|..|+.........   ...+                   ...    ...+ 
T Consensus       179 E~~~~~~~~~~~~Dvws-lGvil~el~~G~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (336)
T cd07849         179 EIMLNSKGYTKAIDIWS-VGCILAEMLSNRPLFPGKDYLHQLNLILGVLGTPSQEDLNCIISLRARNYIKSLPFKPKVPW  257 (336)
T ss_pred             HHhhCCCCCCcHHHHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhchhhhhHHhhcCcCCcccH
Confidence            97654 34456679999 899999999998777532111100   0000                   000    0000 


Q ss_pred             --CCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          408 --RSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       408 --~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                        .....++++++||.+||..|     |+.|+++||||+....+
T Consensus       258 ~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~~~~~  301 (336)
T cd07849         258 NKLFPNADPKALDLLDKMLTFNPHKRITVEEALAHPYLEQYHDP  301 (336)
T ss_pred             HHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcCccccccCCC
Confidence              01235788999999999999     99999999999977643

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.96  E-value=8.8e-30  Score=253.96  Aligned_cols=233  Identities=17%  Similarity=0.217  Sum_probs=175.8

Q ss_pred             EEeccc--cceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeee
Q 013230          138 VKVGEG--TFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMF  209 (447)
Q Consensus       138 ~~LG~G--~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~  209 (447)
                      +.||+|  +||+||+|++      ||+|++.....      .....+.+.+|+.+++.++|        ||    |++++
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~------~~~~~~~~~~e~~~~~~l~h--------~n----iv~~~   65 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENC------TEEHLKALQNEVVLSHFFRH--------PN----IMTSW   65 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccC------CHHHHHHHHHHHHHHHhCCC--------CC----cceEe
Confidence            456666  9999999974      99998875432      22334678899999999988        88    99999


Q ss_pred             eEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHHH
Q 013230          210 EIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAGL  283 (447)
Q Consensus       210 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~gL  283 (447)
                      ++|..                              .+.+|+||||+.+| +|.+++.      +++..++.++.||+.||
T Consensus        66 ~~~~~------------------------------~~~~~~v~e~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL  114 (328)
T cd08226          66 TVFTT------------------------------GSWLWVISPFMAYG-SANSLLKTYFPEGMSEALIGNILFGALRGL  114 (328)
T ss_pred             eeEec------------------------------CCceEEEEecccCC-CHHHHHHhhcccCCCHHHHHHHHHHHHHHH
Confidence            99653                              56689999999988 8888765      78899999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE---E---------EEec
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI---F---------FLDL  351 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~---i---------~~~~  351 (447)
                      +|||+ +||+||||||+|||++.++                    .+|++|||.+......+.   .         ....
T Consensus       115 ~~lH~-~~ivHrDlkp~Nill~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (328)
T cd08226         115 NYLHQ-NGYIHRNIKASHILISGDG--------------------LVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVLP  173 (328)
T ss_pred             HHHHh-CCeecCCCCHHHEEEeCCC--------------------cEEEechHHHhhhhccCccccccccccccccCccC
Confidence            99999 9999999999999999887                    799999986543221110   0         0122


Q ss_pred             CCCCCCCCCCC--CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhcc-------------------------
Q 013230          352 SQDPELFSGPK--GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKK-------------------------  404 (447)
Q Consensus       352 ~~~pelf~g~~--~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~-------------------------  404 (447)
                      |++||.+.+..  .....|+|+ +|.+.++++.|..|+............+....                         
T Consensus       174 y~aPE~~~~~~~~~~~~~Diws-lG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (328)
T cd08226         174 WLSPELLRQDLYGYNVKSDIYS-VGITACELATGRVPFQDMLRTQMLLQKLKGPPYSPLDITTFPCEESRMKNSQSGVDS  252 (328)
T ss_pred             ccChhhhcCCCCCCCchhhHHH-HHHHHHHHHhCCCCCCCcChHHHHHHHhcCCCCCCccccccchhhhhhccchhhhhc
Confidence            78999987642  345679999 89999999999988865432222222211100                         


Q ss_pred             --------------------CCCCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCC
Q 013230          405 --------------------TFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       405 --------------------~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~  441 (447)
                                          ..+.....++++++||++||++|     ||+|+|+||||+..
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~~~~~~~~  314 (328)
T cd08226         253 GIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSHAFFKQV  314 (328)
T ss_pred             ccccchhccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhhCHHHHHH
Confidence                                01112346788999999999999     99999999999754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.96  E-value=1.2e-29  Score=254.60  Aligned_cols=231  Identities=20%  Similarity=0.204  Sum_probs=177.3

Q ss_pred             CcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCc
Q 013230          134 PENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNA  201 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~  201 (447)
                      |++.+.||+|+||.||+|.           .||+|++....       .......+.+|+.+++++ +|        +| 
T Consensus         9 ~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~-------~~~~~~~~~~E~~~~~~l~~h--------~n-   72 (337)
T cd05054           9 LKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGA-------TASEYKALMTELKILIHIGHH--------LN-   72 (337)
T ss_pred             hhhhcccccCcCceEEeccccccccccccceeeeeeccCCC-------CHHHHHHHHHHHHHHHhhccC--------cc-
Confidence            4999999999999999984           38999876321       122335678899999999 55        67 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------------
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------------  266 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------------  266 (447)
                         |+++++++..                             .+..+|++|||+.+| +|.+++.               
T Consensus        73 ---iv~~~~~~~~-----------------------------~~~~~~~v~ey~~~~-~L~~~i~~~~~~~~~~~~~~~~  119 (337)
T cd05054          73 ---VVNLLGACTK-----------------------------PGGPLMVIVEYCKFG-NLSNYLRSKRECFSPYRNKSTR  119 (337)
T ss_pred             ---hhheeeeEec-----------------------------CCCCEEEEEecCCCC-CHHHHHHhcccccccccccccc
Confidence               9999997543                             235689999999988 8887762               


Q ss_pred             --------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHhCCeeecc
Q 013230          267 --------------------------------------------------LNINEARSLLVQVTAGLAVAEAAYEFEHRD  296 (447)
Q Consensus       267 --------------------------------------------------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrD  296 (447)
                                                                        +++..+..++.||+.||+|||+ .||+|||
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~-~~ivHrD  198 (337)
T cd05054         120 KREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELYKEPLTLEDLISYSFQVARGMEFLAS-RKCIHRD  198 (337)
T ss_pred             ccccccccccccccccCCccccccccccccCcchhhcccchhhhHHhhcCCCHHHHHHHHHHHHHHHHHHHh-CCeecCC
Confidence                                                              5778899999999999999999 9999999


Q ss_pred             CCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------CE-EEEecCCCCCCCCCCCCCchHHH
Q 013230          297 LHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------DI-FFLDLSQDPELFSGPKGDKQFDT  369 (447)
Q Consensus       297 LKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g~-i~~~~~~~pelf~g~~~~~~~di  369 (447)
                      |||+|||++.++                    .+||+|||+++.....      +. .....|++||.+.+.....+.||
T Consensus       199 ikp~Nill~~~~--------------------~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di  258 (337)
T cd05054         199 LAARNILLSENN--------------------VVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDKVYTTQSDV  258 (337)
T ss_pred             CCcceEEEeCCC--------------------cEEEeccccchhcccCcchhhccCCCCCccccCcHHhcCCCCCccccH
Confidence            999999999876                    7999999999875322      11 11234889998888777788899


Q ss_pred             HHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHcC
Q 013230          370 YRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       370 ~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      |+ +|++.+++.+ +..|+........+...+........+...++++.+++.+||+.+     |+.|+++|
T Consensus       259 ~S-lGv~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~RPs~~ell~~  329 (337)
T cd05054         259 WS-FGVLLWEIFSLGASPYPGVQIDEEFCRRLKEGTRMRAPEYATPEIYSIMLDCWHNNPEDRPTFSELVEI  329 (337)
T ss_pred             HH-HHHHHHHHHHcCCCCCCCCCccHHHHHHHhccCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            99 9999999886 778875432222222222222222334567889999999999998     99999875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.96  E-value=2.2e-29  Score=240.66  Aligned_cols=234  Identities=25%  Similarity=0.293  Sum_probs=185.6

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+..+.||+|+||.||+|..      +|+|.+.....      .....+.+.+|+.+++.++|        +|    |++
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~------~~~~~~~~~~E~~~l~~~~h--------~~----i~~   63 (257)
T cd08225           2 YEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKM------PVKEKEASKKEVILLAKMKH--------PN----IVT   63 (257)
T ss_pred             ceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhc------cchhhHHHHHHHHHHHhCCC--------CC----hhh
Confidence            58899999999999999873      89998875421      11233567899999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +++.+.                              ..+..|++|||+.+| +|.+++.      +++..++.++.|++.
T Consensus        64 ~~~~~~------------------------------~~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~l~~  112 (257)
T cd08225          64 FFASFQ------------------------------ENGRLFIVMEYCDGG-DLMKRINRQRGVLFSEDQILSWFVQISL  112 (257)
T ss_pred             hhheec------------------------------cCCeEEEEEecCCCC-cHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence            998843                              256799999999977 9988874      689999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pe  356 (447)
                      ||+|||+ .+|+|+||||+||+++.++.                   .+||+|||.+.......     +.....|++||
T Consensus       113 ~l~~lh~-~~i~H~dl~~~nil~~~~~~-------------------~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ape  172 (257)
T cd08225         113 GLKHIHD-RKILHRDIKSQNIFLSKNGM-------------------VAKLGDFGIARQLNDSMELAYTCVGTPYYLSPE  172 (257)
T ss_pred             HHHHHHH-CCcccccCCHHHEEEcCCCC-------------------eEEecccccchhccCCcccccccCCCccccCHH
Confidence            9999999 99999999999999988752                   57999999997764432     12233478899


Q ss_pred             CCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHH
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKE  431 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~e  431 (447)
                      .+.+.....+.|+|+ +|.+.++++.+..|+.............. ....+.....+.+++++|.+||..+     |+.|
T Consensus       173 ~~~~~~~~~~~Dv~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~  250 (257)
T cd08225         173 ICQNRPYNNKTDIWS-LGCVLYELCTLKHPFEGNNLHQLVLKICQ-GYFAPISPNFSRDLRSLISQLFKVSPRDRPSITS  250 (257)
T ss_pred             HHcCCCCCchhhHHH-HHHHHHHHHhCCCCCCCccHHHHHHHHhc-ccCCCCCCCCCHHHHHHHHHHhccChhhCcCHHH
Confidence            888766777789999 99999999999999865443333333321 2222233457889999999999988     9999


Q ss_pred             HHcCCCC
Q 013230          432 AIFDPFF  438 (447)
Q Consensus       432 lL~HPff  438 (447)
                      +++||||
T Consensus       251 ll~~~~~  257 (257)
T cd08225         251 ILKRPFL  257 (257)
T ss_pred             HhhCCCC
Confidence            9999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.96  E-value=4.5e-29  Score=239.17  Aligned_cols=238  Identities=19%  Similarity=0.221  Sum_probs=192.4

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||+|+||.||+|.+      +|+|++.....       ......+.+|+.++..++|        +|    ++
T Consensus         2 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~-------~~~~~~~~~e~~~l~~l~~--------~~----i~   62 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGD-------EEFRKQLLRELKTLRSCES--------PY----VV   62 (264)
T ss_pred             cceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcc-------hHHHHHHHHHHHHHHhcCC--------CC----ee
Confidence            468999999999999999973      89998875421       1345678999999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              .+.+|+||||+.+| +|.+++.    +++..+..++.|++.|
T Consensus        63 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~l~~~~~~~~~~~l~~~  111 (264)
T cd06623          63 KCYGAFYK------------------------------EGEISIVLEYMDGG-SLADLLKKVGKIPEPVLAYIARQILKG  111 (264)
T ss_pred             eEEEEEcc------------------------------CCeEEEEEEecCCC-cHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            99998543                              56799999999987 9999886    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pel  357 (447)
                      |+|||+..|++||||+|+||+++.++                    .++|+|||++.......     ......|++||.
T Consensus       112 l~~lh~~~~~~H~~l~~~ni~~~~~~--------------------~~~l~df~~~~~~~~~~~~~~~~~~~~~y~~pE~  171 (264)
T cd06623         112 LDYLHTKRHIIHRDIKPSNLLINSKG--------------------EVKIADFGISKVLENTLDQCNTFVGTVTYMSPER  171 (264)
T ss_pred             HHHHhccCCCccCCCCHHHEEECCCC--------------------CEEEccCccceecccCCCcccceeecccccCHhh
Confidence            99999659999999999999999987                    79999999998764331     223344789999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChh---HHHHHHHHHHhhccCCCCCcc-chHHHHHHHHHhcccc-----C
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV---LWLVYLVDMLLLKKTFDRSSK-DERDLRSLKKRLDKYN-----S  428 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~---~~~~~~~~~l~~~~~~~~~~~-~s~~l~dLl~~mL~~d-----s  428 (447)
                      +.+...+.+.|+|+ +|.+.++++++..|+...   .+........ .....+.+.. .+..+.+||++||..+     |
T Consensus       172 ~~~~~~~~~~Dv~s-lG~il~~l~tg~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~  249 (264)
T cd06623         172 IQGESYSYAADIWS-LGLTLLECALGKFPFLPPGQPSFFELMQAIC-DGPPPSLPAEEFSPEFRDFISACLQKDPKKRPS  249 (264)
T ss_pred             hCCCCCCchhhHHH-HHHHHHHHHhCCCCCccccccCHHHHHHHHh-cCCCCCCCcccCCHHHHHHHHHHccCChhhCCC
Confidence            98876677789999 999999999999888654   3333333333 2222223344 7889999999999998     9


Q ss_pred             HHHHHcCCCCCCCC
Q 013230          429 AKEAIFDPFFSDLI  442 (447)
Q Consensus       429 a~elL~HPff~~~~  442 (447)
                      +.++++||||+...
T Consensus       250 ~~~ll~~~~~~~~~  263 (264)
T cd06623         250 AAELLQHPFIKKAD  263 (264)
T ss_pred             HHHHHhCHHHHhcc
Confidence            99999999998753

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.96  E-value=6.4e-29  Score=239.80  Aligned_cols=232  Identities=21%  Similarity=0.216  Sum_probs=176.9

Q ss_pred             cceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      .....||+|+||.||+|++      +|+|.+....        ....+.+.+|+.+++.++|        +|    |+++
T Consensus        11 ~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~--------~~~~~~~~~e~~~l~~l~h--------~~----iv~~   70 (268)
T cd06624          11 GERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERD--------SRYVQPLHEEIALHSYLKH--------RN----IVQY   70 (268)
T ss_pred             CceEEEecCCceEEEEeEecCCCcEEEEEEecCCC--------HHHHHHHHHHHHHHHhcCC--------CC----eeee
Confidence            4457899999999999973      8999876432        1233578899999999988        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----C--CHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----L--NINEARSLLVQVTA  281 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l--~~~~~~~i~~Qil~  281 (447)
                      ++++..                              ++..|++|||+.+| +|.+++.     +  ++..+..++.||+.
T Consensus        71 ~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~qi~~  119 (268)
T cd06624          71 LGSDSE------------------------------NGFFKIFMEQVPGG-SLSALLRSKWGPLKDNEQTIIFYTKQILE  119 (268)
T ss_pred             eeeecc------------------------------CCEEEEEEecCCCC-CHHHHHHHhcccCCCcHHHHHHHHHHHHH
Confidence            998432                              56799999999987 9998875     4  78889999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----EEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----FFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i~~~~~~~pe  356 (447)
                      ||+|||+ .||+||||||+||+++.+..                   .++|+|||++........     .....|++||
T Consensus       120 al~~lH~-~~i~h~dl~p~nil~~~~~~-------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE  179 (268)
T cd06624         120 GLKYLHD-NQIVHRDIKGDNVLVNTYSG-------------------VVKISDFGTSKRLAGINPCTETFTGTLQYMAPE  179 (268)
T ss_pred             HHHHHHH-CCEeecCCCHHHEEEcCCCC-------------------eEEEecchhheecccCCCccccCCCCccccChh
Confidence            9999999 99999999999999987432                   799999999876532211     1123478899


Q ss_pred             CCCCCC--CCchHHHHHhhccCCcccccCCCCCChhHHHH-HHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C
Q 013230          357 LFSGPK--GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLV-YLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S  428 (447)
Q Consensus       357 lf~g~~--~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~-~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s  428 (447)
                      .+.+..  ...+.|+|+ +|.+.++++.+..|+....... ..............+...++++++|+++||..+     |
T Consensus       180 ~~~~~~~~~~~~~Dv~s-lGvvl~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt  258 (268)
T cd06624         180 VIDKGPRGYGAPADIWS-LGCTIVEMATGKPPFIELGEPQAAMFKVGMFKIHPEIPESLSAEAKNFILRCFEPDPDKRAS  258 (268)
T ss_pred             hhccccccCCchhhhHH-HHHHHHHHHhCCCCCccccChhhhHhhhhhhccCCCCCcccCHHHHHHHHHHcCCCchhCCC
Confidence            886533  445669999 9999999999998876432111 111111111122234567899999999999988     9


Q ss_pred             HHHHHcCCCC
Q 013230          429 AKEAIFDPFF  438 (447)
Q Consensus       429 a~elL~HPff  438 (447)
                      +.|++.||||
T Consensus       259 ~~~ll~~~~~  268 (268)
T cd06624         259 AHDLLQDPFL  268 (268)
T ss_pred             HHHHHhCCCC
Confidence            9999999997

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.96  E-value=4e-29  Score=251.26  Aligned_cols=248  Identities=18%  Similarity=0.213  Sum_probs=182.9

Q ss_pred             CCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccce
Q 013230          132 SDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~i  205 (447)
                      ..|++++.||+|+||.||+|.+      ||+|++.....      .....+.+.+|+.++++++|        +|    |
T Consensus        17 ~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~------~~~~~~~~~~Ei~~l~~l~h--------~~----i   78 (345)
T cd07877          17 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQ------SIIHAKRTYRELRLLKHMKH--------EN----V   78 (345)
T ss_pred             CceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcch------hhHHHHHHHHHHHHHHHcCC--------Cc----c
Confidence            3459999999999999999973      89998764311      12233567889999999998        88    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAG  282 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~g  282 (447)
                      +++++++.....                        .......|++++++ +| +|.+++.   +++..++.++.||+.|
T Consensus        79 v~~~~~~~~~~~------------------------~~~~~~~~lv~~~~-~~-~L~~~~~~~~l~~~~~~~i~~qi~~a  132 (345)
T cd07877          79 IGLLDVFTPARS------------------------LEEFNDVYLVTHLM-GA-DLNNIVKCQKLTDDHVQFLIYQILRG  132 (345)
T ss_pred             cceeeeeeeccc------------------------ccccccEEEEehhc-cc-CHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            999998643211                        11124578999887 45 8888765   8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC--EEEEecCCCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED--IFFLDLSQDPELFSG  360 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g--~i~~~~~~~pelf~g  360 (447)
                      |+|||+ .||+||||||+||+++.++                    .+||+|||+++......  ......|++||.+.+
T Consensus       133 L~~LH~-~~ivH~dlkp~NIll~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~  191 (345)
T cd07877         133 LKYIHS-ADIIHRDLKPSNLAVNEDC--------------------ELKILDFGLARHTDDEMTGYVATRWYRAPEIMLN  191 (345)
T ss_pred             HHHHHH-CCeeecCCChHHEEEcCCC--------------------CEEEecccccccccccccccccCCCccCHHHHhC
Confidence            999999 9999999999999999987                    79999999998754331  122334789998866


Q ss_pred             C-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh----------------------hc-cCCCC------Cc
Q 013230          361 P-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL----------------------LK-KTFDR------SS  410 (447)
Q Consensus       361 ~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~----------------------~~-~~~~~------~~  410 (447)
                      . ....+.|+|+ +|.+.++++.|..|+........+.....                      .. ...+.      ..
T Consensus       192 ~~~~~~~~Dvws-lG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (345)
T cd07877         192 WMHYNQTVDIWS-VGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFI  270 (345)
T ss_pred             ccCCCchhhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHhhcccHhHHHHHHHhcccCCcchhhhcC
Confidence            3 3455679999 89999999999887743211111111000                      00 00110      11


Q ss_pred             cchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCCC
Q 013230          411 KDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVDR  445 (447)
Q Consensus       411 ~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~~  445 (447)
                      ..++++++||.+||++|     |+.+++.||||+++..+.
T Consensus       271 ~~~~~~~~li~~~L~~dp~~R~t~~e~l~h~~f~~~~~~~  310 (345)
T cd07877         271 GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDPD  310 (345)
T ss_pred             CCCHHHHHHHHHHcCCChhhcCCHHHHhcChhhhhcCCCC
Confidence            35788999999999999     999999999999776544

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.96  E-value=3.6e-29  Score=243.63  Aligned_cols=230  Identities=20%  Similarity=0.212  Sum_probs=180.8

Q ss_pred             CCcceEEeccccceEEEEec----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          133 DPENIVKVGEGTFGEAFLAG----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      +|++.++||+|+||.||+|.          .+|+|.+....       .......+.+|+.+++.++|        ||  
T Consensus         6 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------~n--   68 (283)
T cd05090           6 AVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDIN-------NPQQWGEFQQEASLMAELHH--------PN--   68 (283)
T ss_pred             hceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCC-------CHHHHHHHHHHHHHHhhCCC--------CC--
Confidence            45899999999999999986          27888776321       22233568899999999988        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----------------
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----------------  266 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----------------  266 (447)
                        |+++++++..                              .+..|+||||+.+| +|.+++.                
T Consensus        69 --iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~  115 (283)
T cd05090          69 --IVCLLGVVTQ------------------------------EQPVCMLFEYLNQG-DLHEFLIMRSPHSDVGCSSDEDG  115 (283)
T ss_pred             --eeeEEEEEec------------------------------CCceEEEEEcCCCC-cHHHHHHhcCCCCcccccccccc
Confidence              9999998532                              46689999999988 9988872                


Q ss_pred             -----CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeec
Q 013230          267 -----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRIN  341 (447)
Q Consensus       267 -----l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~  341 (447)
                           +++..+..++.|++.||+|||+ +||+||||||+|||++.+.                    .+||+|||+++..
T Consensus       116 ~~~~~~~~~~~~~i~~~i~~al~~lH~-~~i~H~dlkp~nili~~~~--------------------~~kl~dfg~~~~~  174 (283)
T cd05090         116 TVKSSLDHGDFLHIAIQIAAGMEYLSS-HFFVHKDLAARNILIGEQL--------------------HVKISDLGLSREI  174 (283)
T ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHh-cCeehhccccceEEEcCCC--------------------cEEeccccccccc
Confidence                 6778889999999999999999 9999999999999999886                    7999999999865


Q ss_pred             CCCC-------EEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccch
Q 013230          342 TGED-------IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDE  413 (447)
Q Consensus       342 ~~~g-------~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s  413 (447)
                      ....       ......|++||.+.+...+...|+|+ +|.+.+++++ +..|+....... ....+......+.+...+
T Consensus       175 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s-lG~il~el~~~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~  252 (283)
T cd05090         175 YSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWS-FGVVLWEIFSFGLQPYYGFSNQE-VIEMVRKRQLLPCSEDCP  252 (283)
T ss_pred             cCCcceecccCCCccceecChHHhccCCCCchhhhHH-HHHHHHHHHcCCCCCCCCCCHHH-HHHHHHcCCcCCCCCCCC
Confidence            3321       11123478999988777777789999 8999999998 777875532222 233333334455566788


Q ss_pred             HHHHHHHHHhcccc-----CHHHHHcC
Q 013230          414 RDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       414 ~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      +++++++.+||+.|     ++.+++++
T Consensus       253 ~~~~~li~~cl~~~p~~Rp~~~~i~~~  279 (283)
T cd05090         253 PRMYSLMTECWQEGPSRRPRFKDIHTR  279 (283)
T ss_pred             HHHHHHHHHHcccCcccCcCHHHHHHH
Confidence            99999999999999     88888765

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.96  E-value=4.6e-29  Score=242.71  Aligned_cols=235  Identities=21%  Similarity=0.242  Sum_probs=180.5

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|++.+.||+|+||.||+|.+      ||+|++....      ........+.+|+.+++.++|        +|    |+
T Consensus         2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~------~~~~~~~~~~~e~~~l~~l~~--------~~----i~   63 (288)
T cd07833           2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESE------DDEDVKKTALREVKVLRQLRH--------EN----IV   63 (288)
T ss_pred             ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhc------ccccchhHHHHHHHHHHhcCC--------CC----ee
Confidence            359999999999999999963      8999876432      122344678999999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              ++..|+||||+.++ .+..+..    +++..+..++.||+.|
T Consensus        64 ~~~~~~~~------------------------------~~~~~iv~e~~~~~-~l~~~~~~~~~~~~~~~~~~~~~i~~~  112 (288)
T cd07833          64 NLKEAFRR------------------------------KGRLYLVFEYVERT-LLELLEASPGGLPPDAVRSYIWQLLQA  112 (288)
T ss_pred             ehhheEEE------------------------------CCEEEEEEecCCCC-HHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            99998643                              46699999999865 7666554    8899999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------EEEEecCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------IFFLDLSQDPE  356 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------~i~~~~~~~pe  356 (447)
                      |+|||+ .|++||||||+||+++.++                    .+||+|||+++......      .+....|++||
T Consensus       113 l~~LH~-~~i~H~dl~~~ni~~~~~~--------------------~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~PE  171 (288)
T cd07833         113 IAYCHS-HNIIHRDIKPENILVSESG--------------------VLKLCDFGFARALRARPASPLTDYVATRWYRAPE  171 (288)
T ss_pred             HHHHHH-CCeecCCCCHHHeEECCCC--------------------CEEEEeeecccccCCCccccccCcccccCCcCCc
Confidence            999999 9999999999999999887                    79999999988755432      12234489999


Q ss_pred             CCCCC-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHH--------------hhcc-----CCC---------
Q 013230          357 LFSGP-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDML--------------LLKK-----TFD---------  407 (447)
Q Consensus       357 lf~g~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l--------------~~~~-----~~~---------  407 (447)
                      ++.+. ....+.|+|+ +|.+.++++.|..|+........+....              ....     .++         
T Consensus       172 ~~~~~~~~~~~~Dv~s-lG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (288)
T cd07833         172 LLVGDTNYGKPVDVWA-IGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQPESLE  250 (288)
T ss_pred             hhcCCCCcCchhhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHhhhcccCccccccccCCCCCcHHHH
Confidence            99876 5566679999 8999999999887764321111111000              0000     000         


Q ss_pred             --CCccchHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          408 --RSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       408 --~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                        .+..++.++++||++||..+     |++++++||||
T Consensus       251 ~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~f  288 (288)
T cd07833         251 RRYPGKVSSPALDFLKACLRMDPKERLTCDELLQHPYF  288 (288)
T ss_pred             HhcCCccchHHHHHHHHHhccCchhcccHHHHhcCCCC
Confidence              11234889999999999998     99999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.96  E-value=9.6e-29  Score=235.33  Aligned_cols=233  Identities=23%  Similarity=0.297  Sum_probs=187.8

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||.|+||.||+|.+      +|+|++.....      .+.....+.+|+++++.++|        +|    +++
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~------~~~~~~~~~~e~~~l~~l~~--------~~----~~~   63 (258)
T cd08215           2 YEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNM------SEKEREDALNEVKILKKLNH--------PN----IIK   63 (258)
T ss_pred             ceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccC------ChHHHHHHHHHHHHHHhcCC--------CC----hhh
Confidence            58899999999999999973      89998875421      22345678899999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQV  279 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Qi  279 (447)
                      +.+.+..                              ....+++|||+.+| +|.+++.        +++..+..++.|+
T Consensus        64 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~i~~~i  112 (258)
T cd08215          64 YYESFEE------------------------------KGKLCIVMEYADGG-DLSQKIKKQKKEGKPFPEEQILDWFVQL  112 (258)
T ss_pred             eEEEEec------------------------------CCEEEEEEEecCCC-cHHHHHHHhhccCCCcCHHHHHHHHHHH
Confidence            9988543                              46699999999977 8887763        7899999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQD  354 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~  354 (447)
                      +.||.|||+ .|++|+||+|+||+++.++                    .++|+|||++.......     ......|++
T Consensus       113 ~~~l~~lh~-~~~~H~dl~~~nil~~~~~--------------------~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~  171 (258)
T cd08215         113 CLALKYLHS-RKILHRDIKPQNIFLTSNG--------------------LVKLGDFGISKVLSSTVDLAKTVVGTPYYLS  171 (258)
T ss_pred             HHHHHHHHh-CCEecccCChHHeEEcCCC--------------------cEEECCccceeecccCcceecceeeeecccC
Confidence            999999999 9999999999999999877                    79999999998765543     123345889


Q ss_pred             CCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CH
Q 013230          355 PELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SA  429 (447)
Q Consensus       355 pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa  429 (447)
                      |+.+.+.....+.|+|+ +|.+.++++.+..|+............. .....+.+...+.++++++++||..+     |+
T Consensus       172 pe~~~~~~~~~~~Dv~s-lG~~~~~l~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~  249 (258)
T cd08215         172 PELCQNKPYNYKSDIWS-LGCVLYELCTLKHPFEGENLLELALKIL-KGQYPPIPSQYSSELRNLVSSLLQKDPEERPSI  249 (258)
T ss_pred             hhHhccCCCCccccHHH-HHHHHHHHHcCCCCCCCCcHHHHHHHHh-cCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCH
Confidence            99887777677789999 9999999999988886554333333322 22222334467899999999999998     99


Q ss_pred             HHHHcCCCC
Q 013230          430 KEAIFDPFF  438 (447)
Q Consensus       430 ~elL~HPff  438 (447)
                      .++|+||||
T Consensus       250 ~~ll~~~~~  258 (258)
T cd08215         250 AQILQSPFI  258 (258)
T ss_pred             HHHhcCCCC
Confidence            999999998

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.96  E-value=4.6e-29  Score=243.74  Aligned_cols=241  Identities=19%  Similarity=0.195  Sum_probs=183.5

Q ss_pred             CcceEEeccccceEEEEece---------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          134 PENIVKVGEGTFGEAFLAGN---------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~---------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      |++.+.||+|+||.||+|++         ||+|+++....    .......+.+.+|+.+++.+.+  |     +|    
T Consensus         2 y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~----~~~~~~~~~~~~e~~~l~~l~~--~-----~~----   66 (290)
T cd05613           2 FELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATI----VQKAKTTEHTRTERQVLEHIRQ--S-----PF----   66 (290)
T ss_pred             ceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhh----hhcchHHHHHHHHHHHHHhccc--C-----CC----
Confidence            68899999999999998863         89998874321    1122334677899999999953  1     56    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVT  280 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil  280 (447)
                      |+.+++.+..                              +..+|+||||+.+| +|.+++.    +++..++.++.||+
T Consensus        67 i~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~l~~~~~~~~~~qi~  115 (290)
T cd05613          67 LVTLHYAFQT------------------------------DTKLHLILDYINGG-ELFTHLSQRERFKEQEVQIYSGEIV  115 (290)
T ss_pred             hhceeeEeec------------------------------CCeEEEEEecCCCC-cHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            9999888532                              45689999999988 9988875    89999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------EEEEecCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------IFFLDLSQD  354 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------~i~~~~~~~  354 (447)
                      .||.|||+ .|++||||||+|||++.++                    .+||+|||+++......      ......|++
T Consensus       116 ~al~~lH~-~~i~H~dl~p~nil~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~a  174 (290)
T cd05613         116 LALEHLHK-LGIIYRDIKLENILLDSNG--------------------HVVLTDFGLSKEFHEDEVERAYSFCGTIEYMA  174 (290)
T ss_pred             HHHHHHHh-CCeeccCCCHHHeEECCCC--------------------CEEEeeCccceecccccccccccccCCcccCC
Confidence            99999999 9999999999999999887                    79999999998754321      111233788


Q ss_pred             CCCCCCCC--CCchHHHHHhhccCCcccccCCCCCChhH---HHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc--
Q 013230          355 PELFSGPK--GDKQFDTYRKMKKVTEDQWEGSFPKTNVL---WLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       355 pelf~g~~--~~~~~di~s~lg~~~~~~~~~~~p~~~~~---~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d--  427 (447)
                      ||.+.+..  .....|+|+ +|.+.++++.|..|+....   ....+.+.+. ....+.+...++.+.+|+++||..|  
T Consensus       175 PE~~~~~~~~~~~~~Dv~s-lG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~l~~~p~  252 (290)
T cd05613         175 PDIVRGGDGGHDKAVDWWS-MGVLMYELLTGASPFTVDGEKNSQAEISRRIL-KSEPPYPQEMSALAKDIIQRLLMKDPK  252 (290)
T ss_pred             hhhccCCCCCCCccccHHH-HHHHHHHHhcCCCCCCcCCccccHHHHHHHhh-ccCCCCCccCCHHHHHHHHHHhcCCHH
Confidence            99886532  334569999 9999999999998875321   1111122221 1223334568899999999999998  


Q ss_pred             --------CHHHHHcCCCCCCCCC
Q 013230          428 --------SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       428 --------sa~elL~HPff~~~~~  443 (447)
                              ++++++.||||+....
T Consensus       253 ~R~~~~~~~~~~l~~~~~~~~~~~  276 (290)
T cd05613         253 KRLGCGPSDADEIKKHPFFQKINW  276 (290)
T ss_pred             HhcCCCCCCHHHHHcCcccccCCH
Confidence                    6899999999998753

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.96  E-value=3.9e-29  Score=251.16  Aligned_cols=245  Identities=18%  Similarity=0.229  Sum_probs=182.4

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|.+      ||+|++....      ........+.+|+.+++.++|        +|    |++
T Consensus        17 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------~~----iv~   78 (343)
T cd07880          17 YRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPF------QSELFAKRAYRELRLLKHMKH--------EN----VIG   78 (343)
T ss_pred             eEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccc------cchHHHHHHHHHHHHHHhcCC--------CC----ccc
Confidence            49999999999999999963      9999875331      122234567899999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~  284 (447)
                      +++++...+.                        ...-...|+||||+ |+ +|..++.   +++..++.++.||+.||+
T Consensus        79 ~~~~~~~~~~------------------------~~~~~~~~lv~e~~-~~-~l~~~~~~~~l~~~~~~~i~~qi~~al~  132 (343)
T cd07880          79 LLDVFTPDLS------------------------LDRFHDFYLVMPFM-GT-DLGKLMKHEKLSEDRIQFLVYQMLKGLK  132 (343)
T ss_pred             eeeeecCCcc------------------------ccccceEEEEEecC-CC-CHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            9998643110                        00113469999998 45 8988875   899999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC--EEEEecCCCCCCCCCC-
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED--IFFLDLSQDPELFSGP-  361 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g--~i~~~~~~~pelf~g~-  361 (447)
                      |||+ .||+||||||+|||++.++                    .+||+|||+++......  ......|++||.+.+. 
T Consensus       133 ~LH~-~gi~H~dlkp~Nill~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~  191 (343)
T cd07880         133 YIHA-AGIIHRDLKPGNLAVNEDC--------------------ELKILDFGLARQTDSEMTGYVVTRWYRAPEVILNWM  191 (343)
T ss_pred             HHHh-CCeecCCCCHHHEEEcCCC--------------------CEEEeecccccccccCccccccCCcccCHHHHhCCC
Confidence            9999 9999999999999999887                    79999999998754432  1223347889987653 


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh-----------------------ccCCC------CCccc
Q 013230          362 KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL-----------------------KKTFD------RSSKD  412 (447)
Q Consensus       362 ~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~-----------------------~~~~~------~~~~~  412 (447)
                      ....+.|+|+ +|.+.++++.|..|+..........+.+..                       -..+.      .....
T Consensus       192 ~~~~~~Di~s-lG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (343)
T cd07880         192 HYTQTVDIWS-VGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPRFRKKDFRSLLPNA  270 (343)
T ss_pred             CCCcHHHHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhcchhHHHHHHhccccCcchHHHhccCC
Confidence            3455669999 899999999998888643221111111000                       00000      11346


Q ss_pred             hHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          413 ERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       413 s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                      ++++++||.+||..|     |+.+++.||||+....+
T Consensus       271 ~~~~~~li~~~l~~dP~~R~t~~~~l~~~~~~~~~~~  307 (343)
T cd07880         271 NPLAVNVLEKMLVLDAESRITAAEALAHPYFEEFHDP  307 (343)
T ss_pred             ChHHHHHHHHHcCCChhhCCCHHHHhcCccHhhhcCc
Confidence            788999999999999     99999999999876443

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.96  E-value=4.3e-29  Score=238.56  Aligned_cols=224  Identities=21%  Similarity=0.259  Sum_probs=173.4

Q ss_pred             EEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeE
Q 013230          138 VKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEI  211 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~  211 (447)
                      +.||+|+||.||+|++      +|+|.+...       ........+.+|+.+++.++|        +|    |++++++
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~-------~~~~~~~~~~~e~~~l~~l~h--------~~----i~~~~~~   61 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRET-------LPPDLKAKFLQEARILKQYSH--------PN----IVRLIGV   61 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCcc-------CCHHHHHHHHHHHHHHHhCCC--------CC----cceEEEE
Confidence            3699999999999873      899976532       122334678999999999988        88    9999998


Q ss_pred             EEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHHHHHH
Q 013230          212 KVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAGLAVA  286 (447)
Q Consensus       212 ~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~gL~yl  286 (447)
                      +.                              ..+..|+||||+.+| +|.+++.     +++..++.++.|++.||+||
T Consensus        62 ~~------------------------------~~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~qi~~~L~~l  110 (252)
T cd05084          62 CT------------------------------QKQPIYIVMELVQGG-DFLTFLRTEGPRLKVKELIQMVENAAAGMEYL  110 (252)
T ss_pred             Ec------------------------------CCCCeEEEEeeccCC-cHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            43                              256689999999988 9998874     78999999999999999999


Q ss_pred             HHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------EEE-EecCCCCCCCC
Q 013230          287 EAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------IFF-LDLSQDPELFS  359 (447)
Q Consensus       287 H~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------~i~-~~~~~~pelf~  359 (447)
                      |+ .||+||||||+|||++.++                    .+||+|||+++.....-      ... ...|++||.+.
T Consensus       111 H~-~~i~H~dl~p~nil~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  169 (252)
T cd05084         111 ES-KHCIHRDLAARNCLVTEKN--------------------VLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEALN  169 (252)
T ss_pred             Hh-CCccccccchheEEEcCCC--------------------cEEECccccCcccccccccccCCCCCCceeecCchhhc
Confidence            99 9999999999999999887                    79999999987643221      000 12278999998


Q ss_pred             CCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHH
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAI  433 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL  433 (447)
                      +.....+.|+|+ +|.+.++++. +..|+......... ..+......+.+...+..+.+|+++||+.|     |+.+++
T Consensus       170 ~~~~~~~~Dv~s-lG~il~e~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~  247 (252)
T cd05084         170 YGRYSSESDVWS-FGILLWEAFSLGAVPYANLSNQQTR-EAIEQGVRLPCPELCPDAVYRLMERCWEYDPGQRPSFSTVH  247 (252)
T ss_pred             CCCCChHHHHHH-HHHHHHHHHhCCCCCccccCHHHHH-HHHHcCCCCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence            877777789999 9999999997 77777543222221 122112233344567899999999999998     888886


Q ss_pred             c
Q 013230          434 F  434 (447)
Q Consensus       434 ~  434 (447)
                      +
T Consensus       248 ~  248 (252)
T cd05084         248 Q  248 (252)
T ss_pred             H
Confidence            4

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.96  E-value=3.1e-29  Score=243.86  Aligned_cols=235  Identities=20%  Similarity=0.272  Sum_probs=179.0

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+++++||+|+||.||+|..      +|+|++.....      .....+.+.+|+.+++.++|        ||    |+
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~------~~~~~~~~~~e~~~l~~l~h--------~~----i~   63 (286)
T cd07846           2 KYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESED------DKMVKKIAMREIRMLKQLRH--------EN----LV   63 (286)
T ss_pred             ceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccC------cchhhHHHHHHHHHHHhcCC--------cc----hh
Confidence            468999999999999999973      89998764321      12234567899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++.                              .++..|+||||+.+| .|..+..    +++..++.++.||+.|
T Consensus        64 ~~~~~~~------------------------------~~~~~~lv~e~~~~~-~l~~~~~~~~~~~~~~~~~~~~~i~~~  112 (286)
T cd07846          64 NLIEVFR------------------------------RKKRLYLVFEFVDHT-VLDDLEKYPNGLDESRVRKYLFQILRG  112 (286)
T ss_pred             hHHHhcc------------------------------cCCeEEEEEecCCcc-HHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            9998843                              256799999999976 8887764    8899999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pel  357 (447)
                      |+|||+ .||+||||+|+||+++.++                    .++|+|||+++......     .+....|++||.
T Consensus       113 l~~LH~-~~i~h~~l~p~ni~~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  171 (286)
T cd07846         113 IEFCHS-HNIIHRDIKPENILVSQSG--------------------VVKLCDFGFARTLAAPGEVYTDYVATRWYRAPEL  171 (286)
T ss_pred             HHHHHH-CCccccCCCHHHEEECCCC--------------------cEEEEeeeeeeeccCCccccCcccceeeccCcHH
Confidence            999999 9999999999999999887                    79999999998754331     223344789998


Q ss_pred             CCCCC-CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh-------------------hccCCC----------
Q 013230          358 FSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL-------------------LKKTFD----------  407 (447)
Q Consensus       358 f~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~-------------------~~~~~~----------  407 (447)
                      +.+.. .....|+|+ +|.+.++++.|..|+..........+...                   .....+          
T Consensus       172 ~~~~~~~~~~~Dv~s-lG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (286)
T cd07846         172 LVGDTKYGRAVDIWA-VGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEIEPLEK  250 (286)
T ss_pred             hccccccCchHhHHH-HHHHHHHHHcCCCCCCCCchHHHHHHHHHHhCCCchhhHHHhccchHhhccccccccCcchHHH
Confidence            87643 345569999 89999999998766643211111111000                   000011          


Q ss_pred             CCccchHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          408 RSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       408 ~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                      ....++..+++|+.+||..+     |+.++++||||
T Consensus       251 ~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~~~~  286 (286)
T cd07846         251 RFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLHHEFF  286 (286)
T ss_pred             hCCCcCHHHHHHHHHHhcCCcccchhHHHHhcCCCC
Confidence            02346789999999999998     99999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.96  E-value=7.3e-29  Score=242.37  Aligned_cols=237  Identities=23%  Similarity=0.310  Sum_probs=186.2

Q ss_pred             cceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      ...+.||+|+||.||+|.+      +|+|++....        ....+.+.+|+.+++.++|        +|    |+++
T Consensus        22 ~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~--------~~~~~~~~~e~~~l~~~~h--------~~----vv~~   81 (285)
T cd06648          22 DNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRK--------QQRRELLFNEVVIMRDYQH--------PN----IVEM   81 (285)
T ss_pred             hcceEeccCCCeEEEEEEECCCCCEEEEEEEeccc--------hhHHHHHHHHHHHHHHcCC--------CC----hheE
Confidence            4558999999999999963      8999876332        1233567899999999988        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLAV  285 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~y  285 (447)
                      ++++..                              .+..|+++||+.|| +|.+++.   +++..+..++.|++.||+|
T Consensus        82 ~~~~~~------------------------------~~~~~~v~e~~~~~-~L~~~~~~~~~~~~~~~~~~~ql~~~l~~  130 (285)
T cd06648          82 YSSYLV------------------------------GDELWVVMEFLEGG-ALTDIVTHTRMNEEQIATVCLAVLKALSF  130 (285)
T ss_pred             EEEEEc------------------------------CCeEEEEEeccCCC-CHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            998643                              46689999999987 9998876   8899999999999999999


Q ss_pred             HHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCCCCC
Q 013230          286 AEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPELFSG  360 (447)
Q Consensus       286 lH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pelf~g  360 (447)
                      ||+ +||+||||||+||+++.++                    .++|+|||++......     ..+....|++||...+
T Consensus       131 lH~-~~i~H~dl~p~Nil~~~~~--------------------~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  189 (285)
T cd06648         131 LHA-QGVIHRDIKSDSILLTSDG--------------------RVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEVISR  189 (285)
T ss_pred             HHh-CCeecCCCChhhEEEcCCC--------------------cEEEcccccchhhccCCcccccccCCccccCHHHhcC
Confidence            999 9999999999999999887                    7999999988754322     1122344889999877


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc-cCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK-KTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~-~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      .....+.|+|+ +|.+.++++.|..|+.+.............. .....+...+..+.+|+.+||.++     |+.++++
T Consensus       190 ~~~~~~~Dv~s-lGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~  268 (285)
T cd06648         190 LPYGTEVDIWS-LGIMVIEMVDGEPPYFNEPPLQAMKRIRDNLPPKLKNLHKVSPRLRSFLDRMLVRDPAQRATAAELLN  268 (285)
T ss_pred             CCCCCcccHHH-HHHHHHHHHhCCCCCcCCCHHHHHHHHHhcCCCCCcccccCCHHHHHHHHHHcccChhhCcCHHHHcc
Confidence            66777789999 9999999999998886543322222222111 122223347789999999999998     9999999


Q ss_pred             CCCCCCCCCC
Q 013230          435 DPFFSDLIVD  444 (447)
Q Consensus       435 HPff~~~~~~  444 (447)
                      ||||+....+
T Consensus       269 ~~~~~~~~~~  278 (285)
T cd06648         269 HPFLAKAGPP  278 (285)
T ss_pred             CcccccCCCc
Confidence            9999876543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.96  E-value=8.5e-30  Score=247.28  Aligned_cols=235  Identities=17%  Similarity=0.263  Sum_probs=184.7

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+.++.||+|+||.||+|.+      ||+|.+....       .....+.+.+|+.+++.++|        +|    |++
T Consensus         6 y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~-------~~~~~~~~~~e~~~l~~l~h--------~~----i~~   66 (277)
T cd06642           6 FTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEE-------AEDEIEDIQQEITVLSQCDS--------PY----ITR   66 (277)
T ss_pred             HHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEecccc-------chHHHHHHHHHHHHHHcCCC--------Cc----cHh
Confidence            47788999999999999963      8999876432       12234678899999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~  284 (447)
                      +++.+.                              .++..|+||||+.+| +|.+++.   +++..++.++.||+.||.
T Consensus        67 ~~~~~~------------------------------~~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~i~~~l~  115 (277)
T cd06642          67 YYGSYL------------------------------KGTKLWIIMEYLGGG-SALDLLKPGPLEETYIATILREILKGLD  115 (277)
T ss_pred             hhcccc------------------------------cCCceEEEEEccCCC-cHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence            998853                              256799999999987 9988876   899999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----EEEecCCCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----FFLDLSQDPELFS  359 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i~~~~~~~pelf~  359 (447)
                      |||+ .|++|+||||+||+++.++                    .++|+|||+++.......     .....|++||.+.
T Consensus       116 ~lH~-~~ivH~dl~p~ni~i~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~  174 (277)
T cd06642         116 YLHS-ERKIHRDIKAANVLLSEQG--------------------DVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIK  174 (277)
T ss_pred             HHhc-CCeeccCCChheEEEeCCC--------------------CEEEccccccccccCcchhhhcccCcccccCHHHhC
Confidence            9999 9999999999999999887                    799999999976543321     1223478999998


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      +.....+.|+|+ +|.+.+++++|..|+.......... .+............+.++.+|+.+||..+     |+.++++
T Consensus       175 ~~~~~~~~Dv~s-lG~il~el~tg~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  252 (277)
T cd06642         175 QSAYDFKADIWS-LGITAIELAKGEPPNSDLHPMRVLF-LIPKNSPPTLEGQYSKPFKEFVEACLNKDPRFRPTAKELLK  252 (277)
T ss_pred             cCCCchhhhHHH-HHHHHHHHHhCCCCCcccchhhHHh-hhhcCCCCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence            877777789999 8999999999998876432111111 11111111122356789999999999998     9999999


Q ss_pred             CCCCCCC
Q 013230          435 DPFFSDL  441 (447)
Q Consensus       435 HPff~~~  441 (447)
                      ||||...
T Consensus       253 ~~~~~~~  259 (277)
T cd06642         253 HKFITRY  259 (277)
T ss_pred             hHHHHHH
Confidence            9999754

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.96  E-value=3.8e-29  Score=242.52  Aligned_cols=229  Identities=20%  Similarity=0.223  Sum_probs=180.3

Q ss_pred             CCcceEEeccccceEEEEece-----------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN-----------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA  201 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~-----------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~  201 (447)
                      +|.+.+.||+|+||.||+|..           +|+|++....       .......+.+|+.+++.++|        +| 
T Consensus         6 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~-------~~~~~~~~~~e~~~l~~l~~--------~~-   69 (280)
T cd05049           6 TIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETA-------SNDARKDFEREAELLTNFQH--------EN-   69 (280)
T ss_pred             HhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccC-------CHHHHHHHHHHHHHHHhcCC--------CC-
Confidence            358899999999999999852           7888876331       22234678999999999988        88 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------------
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------------  266 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------------  266 (447)
                         |+++++++..                              ....|+||||+.+| +|.+++.               
T Consensus        70 ---i~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~i~~~~~~~~~~~~~~~~  115 (280)
T cd05049          70 ---IVKFYGVCTE------------------------------GDPPIMVFEYMEHG-DLNKFLRSHGPDAAFLKSPDSP  115 (280)
T ss_pred             ---chheeeEEec------------------------------CCCeEEEEecCCCC-CHHHHHHhcCCchhhhcccccc
Confidence               9999998543                              46699999999988 9988863               


Q ss_pred             ---CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCC
Q 013230          267 ---LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG  343 (447)
Q Consensus       267 ---l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~  343 (447)
                         +++..+..++.||+.||+|||+ .|++||||||+|||++.++                    .+||+|||+++....
T Consensus       116 ~~~l~~~~~~~~~~~i~~~l~~lH~-~~i~h~dlkp~nili~~~~--------------------~~kl~d~g~~~~~~~  174 (280)
T cd05049         116 MGELTLSQLLQIAVQIASGMVYLAS-QHFVHRDLATRNCLVGYDL--------------------VVKIGDFGMSRDVYT  174 (280)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHhh-CCeeccccccceEEEcCCC--------------------eEEECCcccceeccc
Confidence               5788899999999999999999 9999999999999999987                    799999999976432


Q ss_pred             C------C-EEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHH
Q 013230          344 E------D-IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERD  415 (447)
Q Consensus       344 ~------g-~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~  415 (447)
                      .      + ......|++||++.+.......|+|+ +|.+.+++++ |..|+...........+. .......+...+.+
T Consensus       175 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s-lG~il~e~~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  252 (280)
T cd05049         175 TDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWS-FGVVLWEIFTYGKQPWYGLSNEEVIECIT-QGRLLQRPRTCPSE  252 (280)
T ss_pred             CcceecCCCCcccceecChhhhccCCcchhhhHHH-HHHHHHHHHhcCCCCCCCCCHHHHHHHHH-cCCcCCCCCCCCHH
Confidence            1      1 11223478999998877777789999 8999999997 888876543333333222 12222234568899


Q ss_pred             HHHHHHHhcccc-----CHHHHHc
Q 013230          416 LRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       416 l~dLl~~mL~~d-----sa~elL~  434 (447)
                      +++|+.+||..|     |+.|++.
T Consensus       253 ~~~li~~~l~~~p~~Rp~~~eil~  276 (280)
T cd05049         253 VYDIMLGCWKRDPQQRINIKDIHE  276 (280)
T ss_pred             HHHHHHHHcCCCcccCCCHHHHHH
Confidence            999999999999     9998875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1e-28  Score=235.16  Aligned_cols=233  Identities=16%  Similarity=0.205  Sum_probs=187.5

Q ss_pred             CcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||.||+|+      .+|+|.+.....      .+.....+.+|+.++++++|        +|    +++
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~------~~~~~~~~~~e~~~l~~l~~--------~~----i~~   63 (254)
T cd06627           2 YQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKI------KEEALKSIMQEIDLLKNLKH--------PN----IVK   63 (254)
T ss_pred             ceeeeEEcccCCeEEEEEEEcCCCcEEEEEEeccccc------CHHHHHHHHHHHHHHHhCCC--------CC----ccE
Confidence            5889999999999999986      399998875432      22345678999999999988        77    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++..                              .+..|++|||+.++ +|.+++.    +++..+..++.|++.||
T Consensus        64 ~~~~~~~------------------------------~~~~~~v~e~~~~~-~L~~~~~~~~~l~~~~~~~~~~~i~~~l  112 (254)
T cd06627          64 YIGSIET------------------------------SDSLYIILEYAENG-SLRQIIKKFGPFPESLVAVYVYQVLQGL  112 (254)
T ss_pred             EEEEEEe------------------------------CCEEEEEEecCCCC-cHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence            9888532                              46699999999977 9998875    89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----EEEecCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----FFLDLSQDPELF  358 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i~~~~~~~pelf  358 (447)
                      .|||+ .||+||||||+||+++.++                    .++|+|||+++.......     .....|++||..
T Consensus       113 ~~lH~-~~i~H~dl~p~ni~i~~~~--------------------~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~  171 (254)
T cd06627         113 AYLHE-QGVIHRDIKAANILTTKDG--------------------VVKLADFGVATKLNDVSKDDASVVGTPYWMAPEVI  171 (254)
T ss_pred             HHHhh-CCcccCCCCHHHEEECCCC--------------------CEEEeccccceecCCCcccccccccchhhcCHhhh
Confidence            99999 9999999999999999876                    799999999987654321     223347899988


Q ss_pred             CCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHH
Q 013230          359 SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAI  433 (447)
Q Consensus       359 ~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL  433 (447)
                      .+.....+.|+|+ +|.+.++++.+..|+............. .....+.+...+.++++|+.+||..+     |+.+++
T Consensus       172 ~~~~~~~~~Dv~~-lG~~l~~l~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l  249 (254)
T cd06627         172 EMSGASTASDIWS-LGCTVIELLTGNPPYYDLNPMAALFRIV-QDDHPPLPEGISPELKDFLMQCFQKDPNLRPTAKQLL  249 (254)
T ss_pred             cCCCCCcchhHHH-HHHHHHHHHhCCCCCCCccHHHHHHHHh-ccCCCCCCCCCCHHHHHHHHHHHhCChhhCcCHHHHh
Confidence            7766666679999 8999999999998886543322222222 12233334567899999999999999     999999


Q ss_pred             cCCCC
Q 013230          434 FDPFF  438 (447)
Q Consensus       434 ~HPff  438 (447)
                      +||||
T Consensus       250 ~~~~~  254 (254)
T cd06627         250 KHPWI  254 (254)
T ss_pred             cCCCC
Confidence            99998

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.96  E-value=6.9e-29  Score=240.72  Aligned_cols=233  Identities=21%  Similarity=0.207  Sum_probs=171.8

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhcc-ccccCCCCCCCccccee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN-HLRRNEGDTLNACTTFV  206 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~n~~~~iv  206 (447)
                      |+++++||+|+||.||+|.+      +|+|++.....       ........+|+.+++++. |        +|    ++
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~-------~~~~~~~~~e~~~l~~l~~h--------~~----i~   61 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFK-------SLEQVNNLREIQALRRLSPH--------PN----IL   61 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccC-------CchhhhHHHHHHHHhhcCCC--------CC----cc
Confidence            57899999999999999973      89998764321       111123467888888885 5        66    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      ++++++...                            ..+.+|+||||+. | +|.+++.     +++..++.++.||+.
T Consensus        62 ~~~~~~~~~----------------------------~~~~~~lv~e~~~-~-~l~~~l~~~~~~~~~~~~~~~~~qi~~  111 (282)
T cd07831          62 RLIEVLFDR----------------------------KTGRLALVFELMD-M-NLYELIKGRKRPLPEKRVKSYMYQLLK  111 (282)
T ss_pred             ceEEEEecC----------------------------CCCcEEEEEecCC-c-cHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence            999985431                            1256899999997 5 6666654     799999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPEL  357 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pel  357 (447)
                      ||+|||+ .|++||||||+||+++. +                    .+||+|||+++......    .+....|++||.
T Consensus       112 ~L~~LH~-~~i~H~dl~p~ni~l~~-~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~  169 (282)
T cd07831         112 SLDHMHR-NGIFHRDIKPENILIKD-D--------------------ILKLADFGSCRGIYSKPPYTEYISTRWYRAPEC  169 (282)
T ss_pred             HHHHHHH-CCceecccCHHHEEEcC-C--------------------CeEEEecccccccccCCCcCCCCCCcccCChhH
Confidence            9999999 99999999999999999 6                    79999999998654331    122334789997


Q ss_pred             CCC-CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHH---HHHH-----------hh----ccCCCC---------C
Q 013230          358 FSG-PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYL---VDML-----------LL----KKTFDR---------S  409 (447)
Q Consensus       358 f~g-~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~---~~~l-----------~~----~~~~~~---------~  409 (447)
                      +.+ .....+.|+|+ +|.+.++++.+..|+.........   ...+           ..    ...++.         .
T Consensus       170 ~~~~~~~~~~~Di~s-lGv~l~el~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (282)
T cd07831         170 LLTDGYYGPKMDIWA-VGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTGLRKLL  248 (282)
T ss_pred             hhcCCCCCcchhHHH-HHHHHHHHHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhcccccccccCcccccccHHHHc
Confidence            644 33455679999 899999999988777533211111   1000           00    000110         1


Q ss_pred             ccchHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          410 SKDERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       410 ~~~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                      ...+.++++||++||.+|     |++++++||||
T Consensus       249 ~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~~~~  282 (282)
T cd07831         249 PNASAEGLDLLKKLLAYDPDERITAKQALRHPYF  282 (282)
T ss_pred             ccccHHHHHHHHHHhccCcccccCHHHHhhCCCC
Confidence            246799999999999999     99999999998

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.96  E-value=8.2e-29  Score=242.44  Aligned_cols=239  Identities=21%  Similarity=0.272  Sum_probs=180.9

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||+|+||.||+|++      +|+|.+....      ........+.+|+.+++.++|        +|    |+
T Consensus         3 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~------~~~~~~~~~~~e~~~l~~l~h--------~~----i~   64 (294)
T PLN00009          3 QYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQ------EDEGVPSTAIREISLLKEMQH--------GN----IV   64 (294)
T ss_pred             ceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhcc------ccccchHHHHHHHHHHHhccC--------CC----Ee
Confidence            469999999999999999973      9999876432      122334567899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVT  280 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil  280 (447)
                      ++++++..                              .+..|+||||+. | +|.+++.      +++..++.++.||+
T Consensus        65 ~~~~~~~~------------------------------~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~~~~~~~~~~qi~  112 (294)
T PLN00009         65 RLQDVVHS------------------------------EKRLYLVFEYLD-L-DLKKHMDSSPDFAKNPRLIKTYLYQIL  112 (294)
T ss_pred             eEEEEEec------------------------------CCeEEEEEeccc-c-cHHHHHHhCCCCCcCHHHHHHHHHHHH
Confidence            99998543                              567999999996 5 6776654      57888999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDP  355 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~p  355 (447)
                      .||+|||+ .||+||||||+||+++..+.                   .+||+|||+++.....     .......|++|
T Consensus       113 ~aL~~LH~-~~i~H~dl~p~nill~~~~~-------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~P  172 (294)
T PLN00009        113 RGIAYCHS-HRVLHRDLKPQNLLIDRRTN-------------------ALKLADFGLARAFGIPVRTFTHEVVTLWYRAP  172 (294)
T ss_pred             HHHHHHHh-CCeeCCCCCcceEEEECCCC-------------------EEEEcccccccccCCCccccccCceeecccCH
Confidence            99999999 99999999999999986542                   6999999999764322     11233457899


Q ss_pred             CCCCCC-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh--c-------------------cCCCC-----
Q 013230          356 ELFSGP-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL--K-------------------KTFDR-----  408 (447)
Q Consensus       356 elf~g~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~--~-------------------~~~~~-----  408 (447)
                      |.+.+. ....+.|+|+ +|.+.+++++|..|+........+...+..  .                   ..++.     
T Consensus       173 E~~~~~~~~~~~~Dv~s-lG~i~~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (294)
T PLN00009        173 EILLGSRHYSTPVDIWS-VGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEETWPGVTSLPDYKSAFPKWPPKDLAT  251 (294)
T ss_pred             HHHhCCCCCCcHHHHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccccccchhhhhhcccCCCCCHHH
Confidence            987664 3456679999 899999999998887543222222111100  0                   00010     


Q ss_pred             -CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCC
Q 013230          409 -SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       409 -~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~  442 (447)
                       ....++++++|+.+||..|     ++.++++||||.++.
T Consensus       252 ~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~~~~~~~~~  291 (294)
T PLN00009        252 VVPTLEPAGVDLLSKMLRLDPSKRITARAALEHEYFKDLG  291 (294)
T ss_pred             hCcCCChHHHHHHHHHccCChhhCcCHHHHhcCchHhHHh
Confidence             1246889999999999999     999999999999763

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.96  E-value=2e-29  Score=245.89  Aligned_cols=238  Identities=18%  Similarity=0.200  Sum_probs=178.9

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhcc-ccccCCCCCCCcccce
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN-HLRRNEGDTLNACTTF  205 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~n~~~~i  205 (447)
                      +|+..++||+|+||.||++++      +|+|.+.....       ......+.+|+.++.++. |        +|    |
T Consensus         5 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~-------~~~~~~~~~e~~~l~~~~~~--------~~----i   65 (288)
T cd06616           5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVD-------EKEQKRLLMDLDVVMRSSDC--------PY----I   65 (288)
T ss_pred             HhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccC-------hHHHHHHHHHHHHHHHhcCC--------CC----E
Confidence            457788999999999999874      99998875421       123456789999999886 6        67    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhh---h------cCCHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESF---V------LLNINEARSLL  276 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~---i------~l~~~~~~~i~  276 (447)
                      +++++++..                              +...+++|||+.+  +|.++   +      .+++..+..++
T Consensus        66 v~~~~~~~~------------------------------~~~~~~~~e~~~~--~l~~l~~~~~~~~~~~l~~~~~~~i~  113 (288)
T cd06616          66 VKFYGALFR------------------------------EGDCWICMELMDI--SLDKFYKYVYEVLKSVIPEEILGKIA  113 (288)
T ss_pred             eeeeeEEec------------------------------CCcEEEEEecccC--CHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            999998532                              5668999999873  44433   2      18899999999


Q ss_pred             HHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecC
Q 013230          277 VQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLS  352 (447)
Q Consensus       277 ~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~  352 (447)
                      .|++.||+|||+..+|+||||||+|||++.++                    .+||+|||+++.....    .......|
T Consensus       114 ~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~y  173 (288)
T cd06616         114 VATVKALNYLKEELKIIHRDVKPSNILLDRNG--------------------NIKLCDFGISGQLVDSIAKTRDAGCRPY  173 (288)
T ss_pred             HHHHHHHHHHhhcCCeeccCCCHHHEEEccCC--------------------cEEEeecchhHHhccCCccccccCccCc
Confidence            99999999999746999999999999999887                    7999999999764332    11223347


Q ss_pred             CCCCCCCCC---CCCchHHHHHhhccCCcccccCCCCCChhH-HHHHHHHHHhhc-cCCCC--CccchHHHHHHHHHhcc
Q 013230          353 QDPELFSGP---KGDKQFDTYRKMKKVTEDQWEGSFPKTNVL-WLVYLVDMLLLK-KTFDR--SSKDERDLRSLKKRLDK  425 (447)
Q Consensus       353 ~~pelf~g~---~~~~~~di~s~lg~~~~~~~~~~~p~~~~~-~~~~~~~~l~~~-~~~~~--~~~~s~~l~dLl~~mL~  425 (447)
                      ++||.+.+.   ..+.+.|+|+ +|.+.+++++|..|+.... ....+....... ..++.  +..++.++.+|+++||.
T Consensus       174 ~aPE~~~~~~~~~~~~~~Di~s-lG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  252 (288)
T cd06616         174 MAPERIDPSARDGYDVRSDVWS-LGITLYEVATGKFPYPKWNSVFDQLTQVVKGDPPILSNSEEREFSPSFVNFINLCLI  252 (288)
T ss_pred             cCHHHhccccccCCcchhhhhH-HHHHHHHHHhCCCCchhcchHHHHHhhhcCCCCCcCCCcCCCccCHHHHHHHHHHcc
Confidence            899998765   4556679999 8999999999999986432 111112221111 11111  22478899999999999


Q ss_pred             cc-----CHHHHHcCCCCCCCC
Q 013230          426 YN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       426 ~d-----sa~elL~HPff~~~~  442 (447)
                      .|     |++++++||||++..
T Consensus       253 ~~p~~Rpt~~~i~~~~~~~~~~  274 (288)
T cd06616         253 KDESKRPKYKELLEHPFIKDYE  274 (288)
T ss_pred             CChhhCcCHHHHhcChhhhchh
Confidence            99     999999999998754

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=4.3e-30  Score=251.94  Aligned_cols=249  Identities=19%  Similarity=0.269  Sum_probs=194.4

Q ss_pred             hhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCc
Q 013230          128 FSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA  201 (447)
Q Consensus       128 ~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~  201 (447)
                      .+||   -++..||+|+|++||+|.+      ||||+-...+.++.. ....+.+.+.+|.+|.+.|+|        |- 
T Consensus       462 n~RY---LlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdE-KKeNYhKHAcREyrIHKeLDH--------pR-  528 (775)
T KOG1151|consen  462 NDRY---LLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDE-KKENYHKHACREYRIHKELDH--------PR-  528 (775)
T ss_pred             HHHH---HHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhH-hhhhHHHHHHHHHhhhhccCc--------ce-
Confidence            3455   8899999999999999974      999987766543222 233456889999999999999        77 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHH
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLV  277 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~  277 (447)
                         ||++||+|..                             +.+.+|-|+|||+|. ||.-+++    +++.++++|+.
T Consensus       529 ---IVKlYDyfsl-----------------------------DtdsFCTVLEYceGN-DLDFYLKQhklmSEKEARSIiM  575 (775)
T KOG1151|consen  529 ---IVKLYDYFSL-----------------------------DTDSFCTVLEYCEGN-DLDFYLKQHKLMSEKEARSIIM  575 (775)
T ss_pred             ---eeeeeeeeee-----------------------------ccccceeeeeecCCC-chhHHHHhhhhhhHHHHHHHHH
Confidence               9999999865                             246689999999965 9999988    89999999999


Q ss_pred             HHHHHHHHHHH-hCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------CEE---
Q 013230          278 QVTAGLAVAEA-AYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------DIF---  347 (447)
Q Consensus       278 Qil~gL~ylH~-~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g~i---  347 (447)
                      ||+.||.||.+ ...|||-||||+|||+....                +.| .+||+||||++++.+.      |.-   
T Consensus       576 QiVnAL~YLNEikpPIIHYDLKPgNILLv~Gt----------------acG-eIKITDFGLSKIMdddSy~~vdGmeLTS  638 (775)
T KOG1151|consen  576 QIVNALKYLNEIKPPIIHYDLKPGNILLVNGT----------------ACG-EIKITDFGLSKIMDDDSYNSVDGMELTS  638 (775)
T ss_pred             HHHHHHHHHhccCCCeeeeccCCccEEEecCc----------------ccc-eeEeeecchhhhccCCccCcccceeeec
Confidence            99999999984 26899999999999998764                233 6999999999998765      211   


Q ss_pred             ---EEecCCCCCCCCCCC----CCchHHHHHhhccCCcccccCCCCCChhHHHH-HHHHHHh---hccCCCCCccchHHH
Q 013230          348 ---FLDLSQDPELFSGPK----GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLV-YLVDMLL---LKKTFDRSSKDERDL  416 (447)
Q Consensus       348 ---~~~~~~~pelf~g~~----~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~-~~~~~l~---~~~~~~~~~~~s~~l  416 (447)
                         ....|..||-|--..    -..++|+|+ +|++-+..+-|.-||.+..... .+....+   ..-.||....++.++
T Consensus       639 QgAGTYWYLPPEcFvVgkePPKIsnKVDVWS-vGVIFyQClYGrKPFGhnqsQQdILqeNTIlkAtEVqFP~KPvVsseA  717 (775)
T KOG1151|consen  639 QGAGTYWYLPPECFVVGKEPPKISNKVDVWS-VGVIFYQCLYGRKPFGHNQSQQDILQENTILKATEVQFPPKPVVSSEA  717 (775)
T ss_pred             ccCceeeecCcceeecCCCCCccccceeeEe-eehhhhhhhccCCCCCCchhHHHHHhhhchhcceeccCCCCCccCHHH
Confidence               111266788884332    234459999 9999999999999997654322 2222211   124677777899999


Q ss_pred             HHHHHHhcccc-----CHHHHHcCCCCCC
Q 013230          417 RSLKKRLDKYN-----SAKEAIFDPFFSD  440 (447)
Q Consensus       417 ~dLl~~mL~~d-----sa~elL~HPff~~  440 (447)
                      ++||++||.|.     ...++..||||..
T Consensus       718 kaFIRRCLaYRKeDR~DV~qLA~dpyllP  746 (775)
T KOG1151|consen  718 KAFIRRCLAYRKEDRIDVQQLACDPYLLP  746 (775)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHccCccccc
Confidence            99999999998     8889999999964

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.96  E-value=5.2e-29  Score=242.11  Aligned_cols=230  Identities=21%  Similarity=0.234  Sum_probs=180.2

Q ss_pred             CCcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCc
Q 013230          133 DPENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA  201 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~  201 (447)
                      +|++.+.||+|+||.||+|.           .+|+|.+....       .......+.+|+.+++.++|        || 
T Consensus         6 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~-------~~~~~~~~~~ei~~l~~l~h--------~~-   69 (283)
T cd05048           6 AVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENA-------EPKVQQEFRQEAELMSDLQH--------PN-   69 (283)
T ss_pred             HcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCC-------CHHHHHHHHHHHHHHHhcCC--------cc-
Confidence            35899999999999999985           27888765321       22234568899999999988        88 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------------
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------------  266 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------------  266 (447)
                         |+++++++..                              ....|++|||+.+| +|.+++.               
T Consensus        70 ---i~~~~~~~~~------------------------------~~~~~~~~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~  115 (283)
T cd05048          70 ---IVCLLGVCTK------------------------------EQPTCMLFEYLAHG-DLHEFLVRNSPHSDVGAESGDE  115 (283)
T ss_pred             ---cceEEEEEcC------------------------------CCceEEEEecCCCC-cHHHHHHhcCCCcccccccccc
Confidence               9999998532                              45689999999988 8988763               


Q ss_pred             -----CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeec
Q 013230          267 -----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRIN  341 (447)
Q Consensus       267 -----l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~  341 (447)
                           +++..+..++.||+.||+|||+ .|++||||||+|||++.++                    .+||+|||+++..
T Consensus       116 ~~~~~l~~~~~~~~~~~l~~al~~lH~-~~i~H~dlkp~Nil~~~~~--------------------~~~L~dfg~~~~~  174 (283)
T cd05048         116 TVKSSLDCSDFLHIAIQIAAGMEYLSS-HHFVHRDLAARNCLVGEGL--------------------TVKISDFGLSRDI  174 (283)
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHh-CCeeccccccceEEEcCCC--------------------cEEECCCcceeec
Confidence                 5677889999999999999999 9999999999999999887                    7999999999864


Q ss_pred             CCC-------CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccch
Q 013230          342 TGE-------DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDE  413 (447)
Q Consensus       342 ~~~-------g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s  413 (447)
                      ...       .......|++||.+.+...+.+.|+|+ +|.+.+++++ +..|+........ ...+......+.+...+
T Consensus       175 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~s-lG~il~el~~~g~~p~~~~~~~~~-~~~i~~~~~~~~~~~~~  252 (283)
T cd05048         175 YSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWS-FGVVLWEIFSYGLQPYYGFSNQEV-IEMIRSRQLLPCPEDCP  252 (283)
T ss_pred             cccccccccCCCcccccccCHHHhccCcCchhhhHHH-HHHHHHHHHcCCCCCCCCCCHHHH-HHHHHcCCcCCCcccCC
Confidence            322       112233489999887767777789999 9999999987 7888765433332 23332233334456788


Q ss_pred             HHHHHHHHHhcccc-----CHHHHHcC
Q 013230          414 RDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       414 ~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      +++.+|+++||..|     |+.|+++|
T Consensus       253 ~~~~~l~~~c~~~~p~~Rp~~~~i~~~  279 (283)
T cd05048         253 ARVYALMIECWNEIPARRPRFKDIHTR  279 (283)
T ss_pred             HHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            99999999999998     99998865

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.96  E-value=3.4e-29  Score=244.46  Aligned_cols=239  Identities=20%  Similarity=0.209  Sum_probs=182.8

Q ss_pred             CcceEEeccccceEEEEec---------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhcc-ccccCCCCCCCccc
Q 013230          134 PENIVKVGEGTFGEAFLAG---------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN-HLRRNEGDTLNACT  203 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~---------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~n~~~  203 (447)
                      |++.+.||+|+||.||+|+         .+|+|+++....    .......+.+.+|+.++.++. |        +|   
T Consensus         2 ~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~----~~~~~~~~~~~~E~~~l~~~~~~--------~~---   66 (288)
T cd05583           2 FELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATI----VQKAKTAEHTRTERQVLEAVRRC--------PF---   66 (288)
T ss_pred             ceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHH----HhhhhHHHHHHHHHHHHHhccCC--------cc---
Confidence            6889999999999999886         289998864321    012233456789999999995 4        66   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHH
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQV  279 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qi  279 (447)
                       |+++++.+..                              ....|+||||+.+| +|.+++.    +++..++.++.|+
T Consensus        67 -i~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~ql  114 (288)
T cd05583          67 -LVTLHYAFQT------------------------------DTKLHLILDYVNGG-ELFTHLYQREHFTESEVRVYIAEI  114 (288)
T ss_pred             -hhhhheeeec------------------------------CCEEEEEEecCCCC-cHHHHHhhcCCcCHHHHHHHHHHH
Confidence             9999887532                              45689999999988 8888765    7899999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------EEEEecCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------IFFLDLSQ  353 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------~i~~~~~~  353 (447)
                      +.||+|||+ .|++||||||+||+++.++                    .++|+|||+++......      ......|+
T Consensus       115 ~~~l~~lH~-~~~~H~dl~p~nil~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~  173 (288)
T cd05583         115 VLALDHLHQ-LGIIYRDIKLENILLDSEG--------------------HVVLTDFGLSKEFLAEEEERAYSFCGTIEYM  173 (288)
T ss_pred             HHHHHHHHH-CCeeccCCCHHHeEECCCC--------------------CEEEEECccccccccccccccccccCCcccc
Confidence            999999999 9999999999999999887                    79999999987643321      11223478


Q ss_pred             CCCCCCCCC--CCchHHHHHhhccCCcccccCCCCCChh----HHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc
Q 013230          354 DPELFSGPK--GDKQFDTYRKMKKVTEDQWEGSFPKTNV----LWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       354 ~pelf~g~~--~~~~~di~s~lg~~~~~~~~~~~p~~~~----~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d  427 (447)
                      +||.+.+..  ...+.|+|+ +|.+.+++.+|..|+...    ..........  ....+.+...+.++++||.+||..|
T Consensus       174 aPE~~~~~~~~~~~~~Dv~s-lG~il~el~tg~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~li~~~l~~~  250 (288)
T cd05583         174 APEVIRGGSGGHDKAVDWWS-LGVLTFELLTGASPFTVDGEQNSQSEISRRIL--KSKPPFPKTMSAEARDFIQKLLEKD  250 (288)
T ss_pred             CHHHhcCCCCCCcchhhhHH-HHHHHHHHHhCCCCcccCcccchHHHHHHHHH--ccCCCCCcccCHHHHHHHHHHhcCC
Confidence            898887644  455669999 999999999999887422    1122222222  2233444567899999999999999


Q ss_pred             -----C---HHHHHcCCCCCCCCC
Q 013230          428 -----S---AKEAIFDPFFSDLIV  443 (447)
Q Consensus       428 -----s---a~elL~HPff~~~~~  443 (447)
                           |   +.++|+||||+.+..
T Consensus       251 p~~R~t~~~~~~~l~~~~~~~~~~  274 (288)
T cd05583         251 PKKRLGANGADEIKNHPFFQGIDW  274 (288)
T ss_pred             HhhccCcchHHHHhcCcccccCCH
Confidence                 4   788899999998754

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.96  E-value=6.5e-30  Score=270.27  Aligned_cols=229  Identities=17%  Similarity=0.196  Sum_probs=178.9

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      +++.+.|.+|||+.||+|++      +|+|.+-..        ++.....+.+||.+|+.|..  |     +|    ||.
T Consensus        39 v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~--------de~~L~~v~~EI~~MK~L~g--h-----~n----IV~   99 (738)
T KOG1989|consen   39 VTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVN--------DEEALNAVKREIDIMKLLSG--H-----KN----IVS   99 (738)
T ss_pred             EEEEEEEccCCcEEEEEEEecCCCceeeeeeeecC--------CHHHHHHHHHHHHHHHHhcC--C-----Cc----eee
Confidence            48889999999999999973      899976633        34466889999999999983  1     55    999


Q ss_pred             eeeEEEE-e-CCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHH
Q 013230          208 MFEIKVC-Q-GPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQV  279 (447)
Q Consensus       208 l~~~~~~-~-g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qi  279 (447)
                      |+|.... . +.                         ...-.++|.||||.|| .|-+++.      |++.++..|+.|+
T Consensus       100 yidss~~~~~~~-------------------------~~~~EvllLmEyC~gg-~Lvd~mn~Rlq~~lte~eVLkIf~dv  153 (738)
T KOG1989|consen  100 YIDSSAINRSSN-------------------------NGVWEVLLLMEYCKGG-SLVDFMNTRLQTRLTEDEVLKIFYDV  153 (738)
T ss_pred             EeccccccccCC-------------------------CceeEEEeehhhccCC-cHHHHHHHHHhccCChHHHHHHHHHH
Confidence            9994211 0 10                         0023489999999988 8888887      9999999999999


Q ss_pred             HHHHHHHHHhCC--eeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-------------
Q 013230          280 TAGLAVAEAAYE--FEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-------------  344 (447)
Q Consensus       280 l~gL~ylH~~~~--iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-------------  344 (447)
                      ++|+++||. +.  |||||||-|||||..++                    ..||||||.|.-....             
T Consensus       154 ~~AVa~mH~-~~pPiIHRDLKiENvLls~~g--------------------~~KLCDFGSatt~~~~~~~~~e~~~ve~e  212 (738)
T KOG1989|consen  154 CEAVAAMHY-LKPPIIHRDLKIENVLLSADG--------------------NYKLCDFGSATTKILSPTSAQEVNYVEEE  212 (738)
T ss_pred             HHHHHHHhc-CCCccchhhhhhhheEEcCCC--------------------CEEeCcccccccccCCCccHHHHHHHHHH
Confidence            999999998 77  99999999999999998                    7999999998754322             


Q ss_pred             -CEEEEecCCCCCCC---CCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHH
Q 013230          345 -DIFFLDLSQDPELF---SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLK  420 (447)
Q Consensus       345 -g~i~~~~~~~pelf---~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl  420 (447)
                       ...-+.+|++||++   .|..-+.+.|||+ ||+++|-..-.-.||...--    ..++..+-.||....++..+++||
T Consensus       213 I~k~TTp~YRsPEMIDlysg~pI~eKsDIWA-LGclLYkLCy~t~PFe~sg~----laIlng~Y~~P~~p~ys~~l~~LI  287 (738)
T KOG1989|consen  213 IEKYTTPQYRSPEMIDLYSGLPIGEKSDIWA-LGCLLYKLCYFTTPFEESGK----LAILNGNYSFPPFPNYSDRLKDLI  287 (738)
T ss_pred             HHhhCCccccChHHHhhhcCCCCcchhHHHH-HHHHHHHHHHhCCCcCcCcc----eeEEeccccCCCCccHHHHHHHHH
Confidence             11223458999865   5655667779999 99999888777778865311    233444456777778999999999


Q ss_pred             HHhcccc-----CHHHHH
Q 013230          421 KRLDKYN-----SAKEAI  433 (447)
Q Consensus       421 ~~mL~~d-----sa~elL  433 (447)
                      +.||+.|     ++-|++
T Consensus       288 ~~mL~~nP~~RPnI~Qv~  305 (738)
T KOG1989|consen  288 RTMLQPNPDERPNIYQVL  305 (738)
T ss_pred             HHHhccCcccCCCHHHHH
Confidence            9999999     666655

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.96  E-value=2.4e-29  Score=251.50  Aligned_cols=244  Identities=19%  Similarity=0.249  Sum_probs=183.0

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||+|+||.||+|.+      ||+|++....      ........+.+|+.+++.++|        +|    |+
T Consensus         6 ~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~------~~~~~~~~~~~e~~~l~~l~h--------~~----iv   67 (334)
T cd07855           6 RYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAF------DVPTLAKRTLRELKILRHFKH--------DN----II   67 (334)
T ss_pred             ceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEecccc------ccccchHHHHHHHHHHHhcCC--------CC----cc
Confidence            458999999999999999973      9999887432      122344667889999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++...+                          .....+|+||||+. | +|.+++.    +++..++.++.||+.|
T Consensus        68 ~~~~~~~~~~--------------------------~~~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~~~~~i~~qi~~a  119 (334)
T cd07855          68 AIRDILRPPG--------------------------ADFKDVYVVMDLME-S-DLHHIIHSDQPLTEEHIRYFLYQLLRG  119 (334)
T ss_pred             CHHHhccccC--------------------------CCCceEEEEEehhh-h-hHHHHhccCCCCCHHHHHHHHHHHHHH
Confidence            9988753211                          12356899999996 6 8888875    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC---------EEEEecCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED---------IFFLDLSQ  353 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g---------~i~~~~~~  353 (447)
                      |+|||+ +||+||||||+|||++.++                    .+||+|||+++......         .+....|+
T Consensus       120 L~~LH~-~~ivH~dlkp~Nil~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~  178 (334)
T cd07855         120 LKYIHS-ANVIHRDLKPSNLLVNEDC--------------------ELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYR  178 (334)
T ss_pred             HHHHHH-CCeecCCCCHHHEEEcCCC--------------------cEEecccccceeecccCcCCCccccccccccccc
Confidence            999999 9999999999999999987                    79999999997654321         12233478


Q ss_pred             CCCCCCC-CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh--h------------------ccCCCC----
Q 013230          354 DPELFSG-PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL--L------------------KKTFDR----  408 (447)
Q Consensus       354 ~pelf~g-~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~--~------------------~~~~~~----  408 (447)
                      +||.+.+ ...+.+.|+|+ +|.+.+++..+..|+........+.....  +                  ...++.    
T Consensus       179 ~PE~~~~~~~~~~~~Di~s-lG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (334)
T cd07855         179 APELLLSLPEYTTAIDMWS-VGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQPV  257 (334)
T ss_pred             ChHHhcCCcccccccchHH-HHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChhHhhhhhchhhHHHHHhhcccCCCC
Confidence            8998755 33455679999 89999999998888744321111100000  0                  000110    


Q ss_pred             -----CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          409 -----SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       409 -----~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                           ....+.++++||++||+.+     |+++++.||||.....+
T Consensus       258 ~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~~~~~~~~  303 (334)
T cd07855         258 PWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQHPFLAQYHDP  303 (334)
T ss_pred             CHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHhChhhhhccCC
Confidence                 1236889999999999999     99999999999876554

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.96  E-value=1.2e-28  Score=244.54  Aligned_cols=237  Identities=19%  Similarity=0.231  Sum_probs=183.9

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+..+.||+|+||.||+|++      +|+|++.....     ........+.+|+.+++.++|        +|    +++
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~-----~~~~~~~~~~~e~~~l~~l~h--------~~----iv~   89 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGK-----QSNEKWQDIIKEVKFLQRIKH--------PN----SIE   89 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCC-----CchHHHHHHHHHHHHHHhCCC--------CC----EEE
Confidence            47889999999999999973      89998875422     222344678899999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++..                              ++..|+||||+. | +|.+++.     +++..+..++.||+.|
T Consensus        90 ~~~~~~~------------------------------~~~~~lv~e~~~-g-~l~~~~~~~~~~l~~~~~~~i~~~i~~~  137 (317)
T cd06635          90 YKGCYLR------------------------------EHTAWLVMEYCL-G-SASDLLEVHKKPLQEVEIAAITHGALQG  137 (317)
T ss_pred             EEEEEee------------------------------CCeEEEEEeCCC-C-CHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            9998543                              456899999997 5 6666553     7899999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-EEEecCCCCCCCC--
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-FFLDLSQDPELFS--  359 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-i~~~~~~~pelf~--  359 (447)
                      |.|||+ .||+||||||+||+++.++                    .+||+|||++........ .....|++||.+.  
T Consensus       138 l~~lH~-~~i~H~dL~p~Nil~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~  196 (317)
T cd06635         138 LAYLHS-HNMIHRDIKAGNILLTEPG--------------------QVKLADFGSASIASPANSFVGTPYWMAPEVILAM  196 (317)
T ss_pred             HHHHHH-CCcccCCCCcccEEECCCC--------------------CEEEecCCCccccCCcccccCCccccChhhhhcC
Confidence            999999 9999999999999998887                    799999999876543311 2223478999874  


Q ss_pred             -CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHH
Q 013230          360 -GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAI  433 (447)
Q Consensus       360 -g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL  433 (447)
                       +.....+.|+|+ +|.+.++++.|..|+...........+............+++.+++|+.+||+.+     |+.+++
T Consensus       197 ~~~~~~~~~Dv~s-lGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il  275 (317)
T cd06635         197 DEGQYDGKVDVWS-LGITCIELAERKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQDRPTSEELL  275 (317)
T ss_pred             CCCCCCccccHHH-HHHHHHHHHhCCCCCCCccHHHHHHHHHhccCCCCCCccccHHHHHHHHHHccCCcccCcCHHHHH
Confidence             234555679999 8999999999999987654333333333222222223457889999999999998     999999


Q ss_pred             cCCCCCCC
Q 013230          434 FDPFFSDL  441 (447)
Q Consensus       434 ~HPff~~~  441 (447)
                      +|||+...
T Consensus       276 ~~~~~~~~  283 (317)
T cd06635         276 KHMFVLRE  283 (317)
T ss_pred             hChhhhcc
Confidence            99998644

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.96  E-value=9.7e-29  Score=238.27  Aligned_cols=230  Identities=17%  Similarity=0.178  Sum_probs=181.1

Q ss_pred             CCcceEEeccccceEEEEec---------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccc
Q 013230          133 DPENIVKVGEGTFGEAFLAG---------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACT  203 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~---------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~  203 (447)
                      +|++.+.||+|+||.||+|+         .+|+|.+....       .......+.+|+.+++.++|        +|   
T Consensus         5 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~-------~~~~~~~~~~e~~~l~~l~h--------~~---   66 (266)
T cd05033           5 YVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGS-------SDKQRLDFLTEASIMGQFDH--------PN---   66 (266)
T ss_pred             HceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCC-------ChHHHHHHHHHHHHHHhCCC--------CC---
Confidence            35889999999999999985         37888776431       22234567899999999988        88   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHH
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQ  278 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Q  278 (447)
                       |+++++++..                              .+..|++|||+.+| +|.+++.     +++..+..++.|
T Consensus        67 -i~~~~~~~~~------------------------------~~~~~iv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~  114 (266)
T cd05033          67 -IIRLEGVVTK------------------------------SRPVMIITEYMENG-SLDKFLRENDGKFTVGQLVGMLRG  114 (266)
T ss_pred             -cceEeEEEec------------------------------CCceEEEEEcCCCC-CHHHHHHhccCCCCHHHHHHHHHH
Confidence             9999998532                              45689999999988 9999875     789999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC-CCCEEE------Eec
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT-GEDIFF------LDL  351 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~-~~g~i~------~~~  351 (447)
                      ++.||+|||+ .+|+||||||+|||++.++                    .++|+|||+++... ..++..      ...
T Consensus       115 l~~~l~~Lh~-~~i~H~di~p~nili~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~  173 (266)
T cd05033         115 IASGMKYLSE-MNYVHRDLAARNILVNSNL--------------------VCKVSDFGLSRRLEDSEATYTTKGGKIPIR  173 (266)
T ss_pred             HHHHHHHHHh-CCcccCCCCcceEEEcCCC--------------------CEEECccchhhcccccccceeccCCCCCcc
Confidence            9999999999 9999999999999999887                    79999999998764 222211      123


Q ss_pred             CCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc---
Q 013230          352 SQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN---  427 (447)
Q Consensus       352 ~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d---  427 (447)
                      |++||.+.+...+...|+|+ +|.+.+++++ |..|+...........+ ......+.+...+..+.+|+.+||+.+   
T Consensus       174 y~~Pe~~~~~~~~~~~Dv~s-lG~~l~~l~~~g~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~cl~~~p~~  251 (266)
T cd05033         174 WTAPEAIAYRKFTSASDVWS-FGIVMWEVMSYGERPYWDMSNQDVIKAV-EDGYRLPPPMDCPSALYQLMLDCWQKDRNE  251 (266)
T ss_pred             ccChhhhccCCCccccchHH-HHHHHHHHHccCCCCCCCCCHHHHHHHH-HcCCCCCCCCCCCHHHHHHHHHHcCCCccc
Confidence            78899888777777779999 8999999887 77887654333332222 222234445667899999999999998   


Q ss_pred             --CHHHHHcC
Q 013230          428 --SAKEAIFD  435 (447)
Q Consensus       428 --sa~elL~H  435 (447)
                        ++.|++++
T Consensus       252 Rp~~~ei~~~  261 (266)
T cd05033         252 RPTFSQIVST  261 (266)
T ss_pred             CcCHHHHHHH
Confidence              99998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.96  E-value=1.3e-28  Score=234.07  Aligned_cols=236  Identities=20%  Similarity=0.261  Sum_probs=188.1

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |...+.||+|+||.||+|.+      +++|++.....      .+...+.+.+|+.++++++|        +|    |++
T Consensus         2 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~------~~~~~~~~~~e~~~l~~l~~--------~~----i~~   63 (260)
T cd06606           2 WTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGD------SEEELEALEREIRILSSLQH--------PN----IVR   63 (260)
T ss_pred             ceeeeEeeecCceEEEEEEECCCCcEEEEEEeecccc------chHHHHHHHHHHHHHHHcCC--------CC----Eee
Confidence            58889999999999999973      88998765432      13345778999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++.+...                            ..+.++++|||+.+| +|.+++.    +++..+..++.|++.||
T Consensus        64 ~~~~~~~~----------------------------~~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~l~~~l  114 (260)
T cd06606          64 YYGSERDE----------------------------EKNTLNIFLEYVSGG-SLSSLLKKFGKLPEPVIRKYTRQILEGL  114 (260)
T ss_pred             EEEEEecC----------------------------CCCeEEEEEEecCCC-cHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            99885431                            026699999999877 9999876    89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-------EEEecCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-------FFLDLSQDPE  356 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-------i~~~~~~~pe  356 (447)
                      +|||+ .|++|+||+|+||+++.++                    .++|+|||.+........       .....|.+||
T Consensus       115 ~~lh~-~~~~h~dl~p~ni~i~~~~--------------------~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE  173 (260)
T cd06606         115 AYLHS-NGIVHRDIKGANILVDSDG--------------------VVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPE  173 (260)
T ss_pred             HHHHH-CCccccCCCHHHEEEcCCC--------------------CEEEcccccEEecccccccccccCCCCCccccCHh
Confidence            99999 9999999999999999977                    799999999987655431       2223478899


Q ss_pred             CCCCCCCCchHHHHHhhccCCcccccCCCCCChhH-HHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVL-WLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~-~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      .+.+.....+.|+|+ +|.+.++++.|..|+.... .................+...+.++++|+.+||..|     ++.
T Consensus       174 ~~~~~~~~~~~Dv~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~  252 (260)
T cd06606         174 VIRGEEYGRAADIWS-LGCTVIEMATGKPPWSELGNPMAALYKIGSSGEPPEIPEHLSEEAKDFLRKCLRRDPKKRPTAD  252 (260)
T ss_pred             hhcCCCCCchhhHHH-HHHHHHHHHhCCCCCCCCCchHHHHHhccccCCCcCCCcccCHHHHHHHHHhCcCChhhCCCHH
Confidence            988877777789999 9999999999998876543 222222222112223334567899999999999998     999


Q ss_pred             HHHcCCCC
Q 013230          431 EAIFDPFF  438 (447)
Q Consensus       431 elL~HPff  438 (447)
                      |+++||||
T Consensus       253 ~ll~~~~~  260 (260)
T cd06606         253 ELLQHPFL  260 (260)
T ss_pred             HHhhCCCC
Confidence            99999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.96  E-value=1e-28  Score=237.88  Aligned_cols=233  Identities=18%  Similarity=0.157  Sum_probs=180.5

Q ss_pred             CCcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||+|+||.||+|+      .||+|.+.....     ........+.+|+.+++.++|        ||    |+
T Consensus         3 ~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-----~~~~~~~~~~~e~~~l~~l~h--------~~----i~   65 (267)
T cd08228           3 NFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEM-----MDAKARQDCVKEIDLLKQLNH--------PN----VI   65 (267)
T ss_pred             ceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeecccc-----CCHHHHHHHHHHHHHHHhCCC--------cc----ee
Confidence            46999999999999999997      389998764322     122334567899999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQ  278 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Q  278 (447)
                      ++++++..                              .+..|++|||+.+| +|.+++.        +++..+..++.|
T Consensus        66 ~~~~~~~~------------------------------~~~~~~v~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~~~  114 (267)
T cd08228          66 KYLDSFIE------------------------------DNELNIVLELADAG-DLSQMIKYFKKQKRLIPERTVWKYFVQ  114 (267)
T ss_pred             eeeeeEEE------------------------------CCeEEEEEEecCCC-cHHHHHHHhhhccCCCCHHHHHHHHHH
Confidence            99998654                              45689999999988 9988763        788999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCC
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQ  353 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~  353 (447)
                      |+.||+|||+ .|++||||||+|||++.++                    .++|+|||+++......     ......|+
T Consensus       115 i~~~l~~LH~-~~i~H~dl~~~nil~~~~~--------------------~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~  173 (267)
T cd08228         115 LCSAVEHMHS-RRVMHRDIKPANVFITATG--------------------VVKLGDLGLGRFFSSKTTAAHSLVGTPYYM  173 (267)
T ss_pred             HHHHHHHHhh-CCeeCCCCCHHHEEEcCCC--------------------CEEECccccceeccchhHHHhcCCCCcccc
Confidence            9999999999 9999999999999999887                    79999999988754321     12223478


Q ss_pred             CCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHH-HHHHHHHHhhccCCCC-CccchHHHHHHHHHhcccc----
Q 013230          354 DPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLW-LVYLVDMLLLKKTFDR-SSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       354 ~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~-~~~~~~~l~~~~~~~~-~~~~s~~l~dLl~~mL~~d----  427 (447)
                      +||.+.+...+.+.|+|+ +|.+.++++++..|+..... .......+......+. ....+..+++|+.+||..+    
T Consensus       174 aPE~~~~~~~~~~~Di~s-lG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~R  252 (267)
T cd08228         174 SPERIHENGYNFKSDIWS-LGCLLYEMAALQSPFYGDKMNLFSLCQKIEQCDYPPLPTEHYSEKLRELVSMCIYPDPDQR  252 (267)
T ss_pred             ChhhhccCCCCchhhHHH-HHHHHHHHhcCCCCCccccccHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHCCCCcccC
Confidence            999988776677779999 89999999999988754321 1112222211111111 2356789999999999998    


Q ss_pred             -CHHHHHcC
Q 013230          428 -SAKEAIFD  435 (447)
Q Consensus       428 -sa~elL~H  435 (447)
                       |+.++++.
T Consensus       253 p~~~~vl~~  261 (267)
T cd08228         253 PDIGYVHQI  261 (267)
T ss_pred             cCHHHHHHH
Confidence             99998864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.96  E-value=6e-29  Score=245.30  Aligned_cols=236  Identities=23%  Similarity=0.278  Sum_probs=176.4

Q ss_pred             CcceEEeccccceEEEEece--------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccce
Q 013230          134 PENIVKVGEGTFGEAFLAGN--------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~--------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~i  205 (447)
                      |++.++||+|+||.||+|..        +|+|.+.....     ........+.+|+.+++.++|        ||    |
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~-----~~~~~~~~~~~e~~~l~~l~h--------~~----i   64 (316)
T cd07842           2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKE-----QYTGISQSACREIALLRELKH--------EN----V   64 (316)
T ss_pred             ceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccc-----cccCccHHHHHHHHHHHhcCC--------CC----c
Confidence            58999999999999999873        89998875421     122344677899999999998        88    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------CCHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------LNINEARSLL  276 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------l~~~~~~~i~  276 (447)
                      +++++++...                            ..+.+|+||||+. | +|.+++.         +++..++.++
T Consensus        65 ~~~~~~~~~~----------------------------~~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~~~~~~~~~~i~  114 (316)
T cd07842          65 VSLVEVFLEH----------------------------ADKSVYLLFDYAE-H-DLWQIIKFHRQAKRVSIPPSMVKSLL  114 (316)
T ss_pred             cceEEEEeCC----------------------------CCceEEEEEeCCC-c-CHHHHHHhhccCCCcCcCHHHHHHHH
Confidence            9999986431                            1256999999997 3 5665542         6889999999


Q ss_pred             HHHHHHHHHHHHhCCeeeccCCCCCEEEec----CCCccccccccCcccccccCCCcEEEeeccceeecCCC--------
Q 013230          277 VQVTAGLAVAEAAYEFEHRDLHWGNVLLSR----NDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--------  344 (447)
Q Consensus       277 ~Qil~gL~ylH~~~~iiHrDLKpeNILl~~----~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--------  344 (447)
                      .||+.||+|||+ .+|+||||||+|||++.    ++                    .+||+|||+++.....        
T Consensus       115 ~qi~~~l~~lH~-~~i~h~dlkp~Nil~~~~~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~  173 (316)
T cd07842         115 WQILNGVHYLHS-NWVLHRDLKPANILVMGEGPERG--------------------VVKIGDLGLARLFNAPLKPLADLD  173 (316)
T ss_pred             HHHHHHHHHHHh-CCEeeCCCCHHHEEEcCCCCccc--------------------eEEECCCccccccCCCcccccccC
Confidence            999999999999 99999999999999998    54                    7999999998865332        


Q ss_pred             CEEEEecCCCCCCCCCCC-CCchHHHHHhhccCCcccccCCCCCChhHHHH---------HHH---HH------------
Q 013230          345 DIFFLDLSQDPELFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLV---------YLV---DM------------  399 (447)
Q Consensus       345 g~i~~~~~~~pelf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~---------~~~---~~------------  399 (447)
                      ++.....|++||.+.+.. .+.+.|+|+ +|.+.++++.+..|+.......         .+.   ..            
T Consensus       174 ~~~~~~~y~aPE~~~~~~~~~~~~Dv~s-lG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  252 (316)
T cd07842         174 PVVVTIWYRAPELLLGARHYTKAIDIWA-IGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPDI  252 (316)
T ss_pred             CccccccccCHHHHhCCCCCCcHHHHHH-HHHHHHHHHhcCCCCcCCcccccccchhHHHHHHHHHHHhCCCchhHHHHH
Confidence            333444578999886643 456679999 8999999998887764221000         000   00            


Q ss_pred             -----------HhhccCCCC---------CccchHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          400 -----------LLLKKTFDR---------SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       400 -----------l~~~~~~~~---------~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                                 ......++.         ....+.++.+++.+||++|     |+.|+++||||
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~~~~f  316 (316)
T cd07842         253 KKMPEYDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALEHPYF  316 (316)
T ss_pred             hhcccchhhhhhccCCCCCCccHHHHHHhccCCCHHHHHHHHHHhcCCcccCcCHHHHhcCCCC
Confidence                       000011110         1146778999999999999     99999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.96  E-value=7.6e-29  Score=248.84  Aligned_cols=246  Identities=19%  Similarity=0.257  Sum_probs=185.2

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|...+.||+|+||.||+|++      +|+|++....      ........+.+|+.+++.++|        +|    |+
T Consensus        16 ~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~------~~~~~~~~~~~e~~~l~~l~h--------~n----iv   77 (342)
T cd07879          16 RYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPF------QSEIFAKRAYRELTLLKHMQH--------EN----VI   77 (342)
T ss_pred             ceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCcc------ccccchhHHHHHHHHHHhcCC--------CC----cc
Confidence            458999999999999999973      9999876432      122234567899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--CCHHHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--l~~~~~~~i~~Qil~gL~  284 (447)
                      ++++++...+.                        .......|+||||+.  .+|..+..  +++..++.++.|++.||+
T Consensus        78 ~~~~~~~~~~~------------------------~~~~~~~~lv~e~~~--~~l~~~~~~~~~~~~~~~~~~qi~~aL~  131 (342)
T cd07879          78 GLLDVFTSAVS------------------------GDEFQDFYLVMPYMQ--TDLQKIMGHPLSEDKVQYLVYQMLCGLK  131 (342)
T ss_pred             chhheeccccc------------------------CCCCceEEEEecccc--cCHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            99998653221                        111245799999996  37877655  899999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--CEEEEecCCCCCCCCCC-
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--DIFFLDLSQDPELFSGP-  361 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--g~i~~~~~~~pelf~g~-  361 (447)
                      |||+ .||+||||||+|||++.++                    .+||+|||+++.....  +......|++||.+.+. 
T Consensus       132 ~LH~-~~i~H~dlkp~NIll~~~~--------------------~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~  190 (342)
T cd07879         132 YIHS-AGIIHRDLKPGNLAVNEDC--------------------ELKILDFGLARHADAEMTGYVVTRWYRAPEVILNWM  190 (342)
T ss_pred             HHHH-CCcccCCCCHHHEEECCCC--------------------CEEEeeCCCCcCCCCCCCCceeeecccChhhhcCcc
Confidence            9999 9999999999999999887                    7999999999865432  22344558899988653 


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh-----------------------hccCCCC------Cccc
Q 013230          362 KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL-----------------------LKKTFDR------SSKD  412 (447)
Q Consensus       362 ~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~-----------------------~~~~~~~------~~~~  412 (447)
                      ....+.|+|+ +|.+.++++.|..|+........+...+.                       ....++.      ....
T Consensus       191 ~~~~~~Dv~s-lGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (342)
T cd07879         191 HYNQTVDIWS-VGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFPKA  269 (342)
T ss_pred             ccCchHHHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhcccchHHHHhhcCCcccchHHHHhcCC
Confidence            4556679999 89999999999988864332221111110                       0001111      1236


Q ss_pred             hHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          413 ERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       413 s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                      ++++++||++||+.|     |+++++.||||+.+...
T Consensus       270 ~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~~~  306 (342)
T cd07879         270 SPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFRDA  306 (342)
T ss_pred             CHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhcccc
Confidence            788999999999999     99999999999987654

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.96  E-value=1.1e-28  Score=238.24  Aligned_cols=235  Identities=20%  Similarity=0.199  Sum_probs=176.8

Q ss_pred             cceEEeccccceEEEEec--------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          135 ENIVKVGEGTFGEAFLAG--------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~--------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .+.++||+|+||.||+|.        .+|+|.+....      ......+.+.+|+.+++.++|        +|    |+
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------~~----iv   63 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAI------CTRSEMEDFLSEAVCMKEFDH--------PN----VM   63 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCc------CCHHHHHHHHHHHHHHHhCCC--------CC----cc
Confidence            567899999999999996        27888776432      122335678899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----------CCHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----------LNINEARSLL  276 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----------l~~~~~~~i~  276 (447)
                      ++++.+.....                        .......+++|||+.+| +|.+++.          +++..+..++
T Consensus        64 ~~~~~~~~~~~------------------------~~~~~~~~~v~e~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~  118 (272)
T cd05075          64 RLIGVCLQTVE------------------------SEGYPSPVVILPFMKHG-DLHSFLLYSRLGDCPQYLPTQMLVKFM  118 (272)
T ss_pred             eEEEEEccCCc------------------------ccCCCCcEEEEEeCCCC-cHHHHHHHhcccCCcccCCHHHHHHHH
Confidence            99987432110                        00123479999999988 8888762          6889999999


Q ss_pred             HHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----E--EE
Q 013230          277 VQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----F--FL  349 (447)
Q Consensus       277 ~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i--~~  349 (447)
                      .||+.||+|||+ +||+||||||+|||++.++                    .+||+|||+++.......     .  ..
T Consensus       119 ~~i~~~l~~lH~-~~i~H~dlkp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~  177 (272)
T cd05075         119 TDIASGMEYLSS-KSFIHRDLAARNCMLNENM--------------------NVCVADFGLSKKIYNGDYYRQGRIAKMP  177 (272)
T ss_pred             HHHHHHHHHHHH-CCeeccccchhheEEcCCC--------------------CEEECCCCcccccCcccceecCCcccCC
Confidence            999999999999 9999999999999998886                    799999999987643321     1  11


Q ss_pred             ecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-
Q 013230          350 DLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-  427 (447)
Q Consensus       350 ~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-  427 (447)
                      ..|++|+...+.....+.|+|+ +|.+.++++. +..|+....... +.+.+......+.+...+..++++|.+||..| 
T Consensus       178 ~~~~~pe~~~~~~~~~~~Di~s-lG~il~el~~~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p  255 (272)
T cd05075         178 VKWIAIESLADRVYTTKSDVWS-FGVTMWEIATRGQTPYPGVENSE-IYDYLRQGNRLKQPPDCLDGLYSLMSSCWLLNP  255 (272)
T ss_pred             cccCCHHHccCCCcChHHHHHH-HHHHHHHHHcCCCCCCCCCCHHH-HHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCc
Confidence            2367788887766777789999 8999999988 667775432222 22233223333444567889999999999999 


Q ss_pred             ----CHHHHHcC
Q 013230          428 ----SAKEAIFD  435 (447)
Q Consensus       428 ----sa~elL~H  435 (447)
                          |+.+++++
T Consensus       256 ~~Rps~~~l~~~  267 (272)
T cd05075         256 KDRPSFETLRCE  267 (272)
T ss_pred             ccCcCHHHHHHH
Confidence                99998764

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.96  E-value=1e-28  Score=237.27  Aligned_cols=227  Identities=22%  Similarity=0.235  Sum_probs=178.3

Q ss_pred             CCcceEEeccccceEEEEece-----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN-----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~-----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      +|+++++||+|+||.||+|..     +|+|.+....         ...+.+.+|+.+++.++|        +|    |++
T Consensus         7 ~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~---------~~~~~~~~e~~~l~~l~h--------~~----i~~   65 (261)
T cd05072           7 SIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGT---------MSVQAFLEEANLMKTLQH--------DK----LVR   65 (261)
T ss_pred             HeEEeeecCCcCCceEEEEEecCCceEEEEEccCCc---------hhHHHHHHHHHHHHhCCC--------CC----eee
Confidence            459999999999999999973     8888765321         124678999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +++.+.                              ..+..|++|||+.+| +|.+++.      ++...+..++.|++.
T Consensus        66 ~~~~~~------------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~l~~  114 (261)
T cd05072          66 LYAVVT------------------------------KEEPIYIITEYMAKG-SLLDFLKSDEGGKVLLPKLIDFSAQIAE  114 (261)
T ss_pred             EEEEEc------------------------------CCCCcEEEEecCCCC-cHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            988843                              256689999999988 9998874      788899999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------EEEEecCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------IFFLDLSQDP  355 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------~i~~~~~~~p  355 (447)
                      ||+|||+ .+++||||||+|||++.++                    .+||+|||+++......      ......|++|
T Consensus       115 ~l~~LH~-~~i~H~dl~p~nili~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aP  173 (261)
T cd05072         115 GMAYIER-KNYIHRDLRAANVLVSESL--------------------MCKIADFGLARVIEDNEYTAREGAKFPIKWTAP  173 (261)
T ss_pred             HHHHHHH-CCeeccccchhhEEecCCC--------------------cEEECCCccceecCCCceeccCCCccceecCCH
Confidence            9999999 9999999999999999887                    79999999998765432      1112248899


Q ss_pred             CCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CH
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SA  429 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa  429 (447)
                      |.+.+.....+.|+|+ +|.+.+++++ +..|+........... +......+.....+.++.+|+.+||..+     |+
T Consensus       174 E~~~~~~~~~~~Di~s-lG~~l~~l~t~g~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~  251 (261)
T cd05072         174 EAINFGSFTIKSDVWS-FGILLYEIVTYGKIPYPGMSNSDVMSA-LQRGYRMPRMENCPDELYDIMKTCWKEKAEERPTF  251 (261)
T ss_pred             HHhccCCCChhhhhhh-hHHHHHHHHccCCCCCCCCCHHHHHHH-HHcCCCCCCCCCCCHHHHHHHHHHccCCcccCcCH
Confidence            9988766677789999 9999999997 7788754322222222 2222234444567889999999999998     88


Q ss_pred             HHHHc
Q 013230          430 KEAIF  434 (447)
Q Consensus       430 ~elL~  434 (447)
                      +++++
T Consensus       252 ~~i~~  256 (261)
T cd05072         252 DYLQS  256 (261)
T ss_pred             HHHHH
Confidence            88753

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.96  E-value=4.6e-29  Score=250.61  Aligned_cols=232  Identities=19%  Similarity=0.196  Sum_probs=175.7

Q ss_pred             CcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          134 PENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      |++.+.||+|+||.||+|+           .||+|+++...       .......+.+|+.++.++.|  |     +|  
T Consensus         9 ~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~~~E~~~l~~l~~--h-----~n--   72 (343)
T cd05103           9 LKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA-------THSEHRALMSELKILIHIGH--H-----LN--   72 (343)
T ss_pred             hcccccccCCccceEEEEeeccCCccccceeEEEEEeccCC-------ChHHHHHHHHHHHHHHhccC--C-----cc--
Confidence            4999999999999999985           38999886432       12234568899999999954  1     56  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----------------
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----------------  266 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----------------  266 (447)
                        |+++++++..                             ....+|++||||.+| +|.+++.                
T Consensus        73 --iv~~~~~~~~-----------------------------~~~~~~lv~ey~~~g-~L~~~i~~~~~~~~~~~~~~~~~  120 (343)
T cd05103          73 --VVNLLGACTK-----------------------------PGGPLMVIVEFCKFG-NLSNYLRSKRGEFVPYKTKDARF  120 (343)
T ss_pred             --Hhhhcceeec-----------------------------CCCceEEEEeccCCC-cHHHHHHhcCCcccccccccccc
Confidence              9999987543                             134589999999988 8887752                


Q ss_pred             -------------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHhCC
Q 013230          267 -------------------------------------------------------LNINEARSLLVQVTAGLAVAEAAYE  291 (447)
Q Consensus       267 -------------------------------------------------------l~~~~~~~i~~Qil~gL~ylH~~~~  291 (447)
                                                                             ++...+..++.||+.||+|||+ .|
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~-~~  199 (343)
T cd05103         121 RQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLAS-RK  199 (343)
T ss_pred             ccccccccchhhhhhhhccccccccccccccccCCCccccchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHh-CC
Confidence                                                                   4667788899999999999999 99


Q ss_pred             eeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-------EEEEecCCCCCCCCCCCCC
Q 013230          292 FEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-------IFFLDLSQDPELFSGPKGD  364 (447)
Q Consensus       292 iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-------~i~~~~~~~pelf~g~~~~  364 (447)
                      |+||||||+|||++.++                    .+||+|||+++......       ......|++||.+.+....
T Consensus       200 i~H~dikp~Nil~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  259 (343)
T cd05103         200 CIHRDLAARNILLSENN--------------------VVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYT  259 (343)
T ss_pred             eecCCCccCeEEEcCCC--------------------cEEEEecccccccccCcchhhcCCCCCCcceECcHHhcCCCCC
Confidence            99999999999999887                    79999999998643221       1111237899988777777


Q ss_pred             chHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHcC
Q 013230          365 KQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       365 ~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      .+.|+|+ +|.+.++++. +..|+............+......+.+...++++.+++.+||+.|     |+.|+++|
T Consensus       260 ~~~Di~s-lG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~~~p~~Rps~~eil~~  335 (343)
T cd05103         260 IQSDVWS-FGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  335 (343)
T ss_pred             chhhHHH-HHHHHHHHHHCCCCCCCCccccHHHHHHHhccCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            7889999 8999999885 777775432222222333222333344557889999999999998     99999886

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.96  E-value=1.8e-28  Score=235.76  Aligned_cols=226  Identities=20%  Similarity=0.252  Sum_probs=179.3

Q ss_pred             CcceEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          134 PENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      |++.+.||+|+||.||+|.     .||+|.+....         ...+.+.+|+.++++++|        +|    |+++
T Consensus         8 ~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~---------~~~~~~~~e~~~l~~l~h--------~~----i~~~   66 (261)
T cd05068           8 IQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGT---------MDPKDFLAEAQIMKKLRH--------PK----LIQL   66 (261)
T ss_pred             eeeEEEecccCCccEEEEEecCCeEEEEEeeCCCc---------ccHHHHHHHHHHHHHCCC--------CC----ccce
Confidence            5889999999999999986     38999876432         123568899999999998        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAG  282 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~g  282 (447)
                      ++++..                              .+.+|++|||+.+| +|.+++.      +++..+..++.|++.|
T Consensus        67 ~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~i~~~  115 (261)
T cd05068          67 YAVCTL------------------------------EEPIYIVTELMKYG-SLLEYLQGGAGRALKLPQLIDMAAQVASG  115 (261)
T ss_pred             eEEEec------------------------------CCCeeeeeecccCC-cHHHHHhccCCCCCCHHHHHHHHHHHHHH
Confidence            988532                              45689999999877 9998874      7899999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------CEEEEecCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------DIFFLDLSQDPE  356 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g~i~~~~~~~pe  356 (447)
                      |.|||+ .||+||||||+||+++.++                    .+||+|||+++.....      |..+...|++||
T Consensus       116 l~~lH~-~~i~H~dl~p~Nil~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE  174 (261)
T cd05068         116 MAYLEA-QNYIHRDLAARNVLVGENN--------------------ICKVADFGLARVIKEDIYEAREGAKFPIKWTAPE  174 (261)
T ss_pred             HHHHHh-CCeeeccCCcceEEEcCCC--------------------CEEECCcceEEEccCCcccccCCCcCceeccCcc
Confidence            999999 9999999999999999987                    7999999999876533      222223488999


Q ss_pred             CCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      .+.+...+.+.|+|+ +|.+.+++++ +..|+...........+. .....+.+...+..+.+++.+||..+     +++
T Consensus       175 ~~~~~~~~~~~Di~s-lG~~l~el~t~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~  252 (261)
T cd05068         175 AALYNRFSIKSDVWS-FGILLTEIVTYGRMPYPGMTNAEVLQQVD-QGYRMPCPPGCPKELYDIMLDCWKEDPDDRPTFE  252 (261)
T ss_pred             ccccCCCCchhhHHH-HHHHHHHHHhcCCCCCCCCCHHHHHHHHH-cCCCCCCCCcCCHHHHHHHHHHhhcCcccCCCHH
Confidence            998877777889999 8999999998 777775543333222222 12233344567899999999999988     788


Q ss_pred             HHHc
Q 013230          431 EAIF  434 (447)
Q Consensus       431 elL~  434 (447)
                      ++++
T Consensus       253 ~l~~  256 (261)
T cd05068         253 TLQW  256 (261)
T ss_pred             HHHH
Confidence            7753

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.96  E-value=1.3e-28  Score=242.85  Aligned_cols=229  Identities=20%  Similarity=0.198  Sum_probs=177.8

Q ss_pred             CcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCc
Q 013230          134 PENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNA  201 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~  201 (447)
                      |++.+.||+|+||.||+|.           .+|+|.+....       .....+.+.+|+.+++++ +|        +| 
T Consensus        37 ~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~~~E~~~l~~l~~h--------~~-  100 (302)
T cd05055          37 LSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTA-------HSSEREALMSELKIMSHLGNH--------EN-  100 (302)
T ss_pred             eEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccC-------ChHHHHHHHHHHHHHHhccCC--------CC-
Confidence            4889999999999999985           37888765321       122345788999999999 67        77 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHH
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSL  275 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i  275 (447)
                         |+++++++..                              .+.+|+||||+.+| +|.+++.      +++.++..+
T Consensus       101 ---iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~i~~~~~~~l~~~~~~~i  146 (302)
T cd05055         101 ---IVNLLGACTI------------------------------GGPILVITEYCCYG-DLLNFLRRKRESFLTLEDLLSF  146 (302)
T ss_pred             ---cceEEEEEec------------------------------CCceEEEEEcCCCC-cHHHHHHhCCCCCCCHHHHHHH
Confidence               9999998543                              45689999999988 9998875      789999999


Q ss_pred             HHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-------EE
Q 013230          276 LVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-------FF  348 (447)
Q Consensus       276 ~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-------i~  348 (447)
                      +.|++.||+|||+ .+|+||||||+|||++.++                    .+||+|||+++.......       ..
T Consensus       147 ~~~i~~~l~~lH~-~~ivH~dlkp~Nil~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~  205 (302)
T cd05055         147 SYQVAKGMAFLAS-KNCIHRDLAARNVLLTHGK--------------------IVKICDFGLARDIMNDSNYVVKGNARL  205 (302)
T ss_pred             HHHHHHHHHHHHH-CCeehhhhccceEEEcCCC--------------------eEEECCCcccccccCCCceeecCCCCc
Confidence            9999999999999 9999999999999998776                    799999999986543321       11


Q ss_pred             EecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc
Q 013230          349 LDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       349 ~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d  427 (447)
                      ...|++||.+.+.....+.|+|+ +|.+.+++++ |..|+............+........+...++++.+|+.+||..+
T Consensus       206 ~~~y~aPE~~~~~~~~~~~Diws-lGvil~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~  284 (302)
T cd05055         206 PVKWMAPESIFNCVYTFESDVWS-YGILLWEIFSLGSNPYPGMPVDSKFYKLIKEGYRMAQPEHAPAEIYDIMKTCWDAD  284 (302)
T ss_pred             ccccCCHhhhccCCCCcHhHHHH-HHHHHHHHHhCCCCCcCCCCchHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCC
Confidence            23488999888777777889999 9999999987 777875433222222222222223334457899999999999988


Q ss_pred             -----CHHHHHc
Q 013230          428 -----SAKEAIF  434 (447)
Q Consensus       428 -----sa~elL~  434 (447)
                           |+.|+++
T Consensus       285 p~~Rpt~~ell~  296 (302)
T cd05055         285 PLKRPTFKQIVQ  296 (302)
T ss_pred             chhCcCHHHHHH
Confidence                 9998875

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.96  E-value=1.4e-30  Score=261.95  Aligned_cols=235  Identities=17%  Similarity=0.143  Sum_probs=192.5

Q ss_pred             CCCCcchhhhhhccCCCcceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhcccccc
Q 013230          118 HSAPTKLLDLFSKYSDPENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRR  193 (447)
Q Consensus       118 ~~~~~~~~~~~~~y~~~~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~  193 (447)
                      ++....+.-.|+..   ..++.||.|+-|.||+|+    .||||+|+--               -..+|+-|++|+|   
T Consensus       113 ~qq~e~WeiPFe~I---sELeWlGSGaQGAVF~Grl~netVAVKKV~el---------------kETdIKHLRkLkH---  171 (904)
T KOG4721|consen  113 QQQEELWEIPFEEI---SELEWLGSGAQGAVFLGRLHNETVAVKKVREL---------------KETDIKHLRKLKH---  171 (904)
T ss_pred             hhhhhhccCCHHHh---hhhhhhccCcccceeeeeccCceehhHHHhhh---------------hhhhHHHHHhccC---
Confidence            33344455555555   677999999999999998    4999987621               1356777888888   


Q ss_pred             CCCCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCH
Q 013230          194 NEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNI  269 (447)
Q Consensus       194 ~~~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~  269 (447)
                           +|    ||.+.+++.                              ..-.+||+||||..| .|..+++    ++.
T Consensus       172 -----~N----II~FkGVCt------------------------------qsPcyCIiMEfCa~G-qL~~VLka~~~itp  211 (904)
T KOG4721|consen  172 -----PN----IITFKGVCT------------------------------QSPCYCIIMEFCAQG-QLYEVLKAGRPITP  211 (904)
T ss_pred             -----cc----eeeEeeeec------------------------------CCceeEEeeeccccc-cHHHHHhccCccCH
Confidence                 88    999999942                              245689999999999 9999988    888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE---
Q 013230          270 NEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI---  346 (447)
Q Consensus       270 ~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~---  346 (447)
                      .....+..+|+.|+.|||. +.|||||||.-||||..++                    .|||+|||.++.......   
T Consensus       212 ~llv~Wsk~IA~GM~YLH~-hKIIHRDLKSPNiLIs~~d--------------------~VKIsDFGTS~e~~~~STkMS  270 (904)
T KOG4721|consen  212 SLLVDWSKGIAGGMNYLHL-HKIIHRDLKSPNILISYDD--------------------VVKISDFGTSKELSDKSTKMS  270 (904)
T ss_pred             HHHHHHHHHhhhhhHHHHH-hhHhhhccCCCceEeeccc--------------------eEEeccccchHhhhhhhhhhh
Confidence            9999999999999999999 9999999999999999998                    799999999987655421   


Q ss_pred             -EEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcc
Q 013230          347 -FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDK  425 (447)
Q Consensus       347 -i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~  425 (447)
                       ...-.+|+||+........++|||+ +|+++++|+++..|+.++.....+...-.+.-.+|.+...+..|+-||++|++
T Consensus       271 FaGTVaWMAPEvIrnePcsEKVDIwS-fGVVLWEmLT~EiPYkdVdssAIIwGVGsNsL~LpvPstcP~GfklL~Kqcw~  349 (904)
T KOG4721|consen  271 FAGTVAWMAPEVIRNEPCSEKVDIWS-FGVVLWEMLTGEIPYKDVDSSAIIWGVGSNSLHLPVPSTCPDGFKLLLKQCWN  349 (904)
T ss_pred             hhhhHhhhCHHHhhcCCcccccceeh-hHHHHHHHHhcCCCccccchheeEEeccCCcccccCcccCchHHHHHHHHHHh
Confidence             1122379999999989999999999 99999999999999988765554433333334677788899999999999998


Q ss_pred             cc-----CHHHHHcC
Q 013230          426 YN-----SAKEAIFD  435 (447)
Q Consensus       426 ~d-----sa~elL~H  435 (447)
                      -.     |..++|.|
T Consensus       350 sKpRNRPSFrqil~H  364 (904)
T KOG4721|consen  350 SKPRNRPSFRQILLH  364 (904)
T ss_pred             cCCCCCccHHHHHHH
Confidence            77     99999988

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.96  E-value=9.7e-29  Score=237.08  Aligned_cols=228  Identities=18%  Similarity=0.247  Sum_probs=179.0

Q ss_pred             CCcceEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          133 DPENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      +|++.+.||+|+||.||+|+     .+|+|++....         .....+.+|+.+++.++|        +|    |++
T Consensus         5 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~---------~~~~~~~~e~~~l~~l~~--------~~----i~~   63 (256)
T cd05059           5 ELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGA---------MSEDDFIEEAKVMMKLSH--------PN----LVQ   63 (256)
T ss_pred             HcchhhhhccCCCceEEEeEecCCccEEEEEeccCC---------CCHHHHHHHHHHHHhCCC--------CC----EEE
Confidence            35888999999999999986     38999875321         123467889999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++.                              ..+..|+||||+.|| +|.+++.     +++..++.++.||+.|
T Consensus        64 ~~~~~~------------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~i~~qi~~~  112 (256)
T cd05059          64 LYGVCT------------------------------KQRPIFIVTEYMANG-CLLNYLRERKGKLGTEWLLDMCSDVCEA  112 (256)
T ss_pred             EEEEEc------------------------------CCCceEEEEecCCCC-CHHHHHHhcccCCCHHHHHHHHHHHHHH
Confidence            998843                              245689999999987 8998874     7899999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE------EEEecCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI------FFLDLSQDPE  356 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~------i~~~~~~~pe  356 (447)
                      |+|||+ .||+||||||+||+++.++                    .+||+|||+++.......      .....|++||
T Consensus       113 l~~lH~-~~i~H~dl~p~ni~i~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe  171 (256)
T cd05059         113 MEYLES-NGFIHRDLAARNCLVGEDN--------------------VVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPE  171 (256)
T ss_pred             HHHHHH-CCcccccccHhhEEECCCC--------------------cEEECCcccceecccccccccCCCCCCccccCHH
Confidence            999999 9999999999999999887                    799999999986543211      1111378999


Q ss_pred             CCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      .+.+.....+.|+|+ +|.+.+++++ +..|+............. .....+.+...+.++.+++.+||..+     |+.
T Consensus       172 ~~~~~~~~~~~Di~s-lG~il~~l~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~  249 (256)
T cd05059         172 VFDYSRFSSKSDVWS-FGVLMWEVFSEGKMPYERFSNSEVVESVS-AGYRLYRPKLAPTEVYTIMYSCWHEKPEDRPAFK  249 (256)
T ss_pred             HhccCCCCchhhHHH-HHHHHHHHhccCCCCCCCCCHHHHHHHHH-cCCcCCCCCCCCHHHHHHHHHHhcCChhhCcCHH
Confidence            998877777789999 9999999998 677775433333222222 22233444567899999999999988     999


Q ss_pred             HHHcC
Q 013230          431 EAIFD  435 (447)
Q Consensus       431 elL~H  435 (447)
                      |+++.
T Consensus       250 ~~l~~  254 (256)
T cd05059         250 KLLSQ  254 (256)
T ss_pred             HHHHH
Confidence            98864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.96  E-value=1.6e-28  Score=238.60  Aligned_cols=228  Identities=18%  Similarity=0.184  Sum_probs=177.0

Q ss_pred             CCcceEEeccccceEEEEece----------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN----------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~----------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      +|+.+++||+|+||.||+|+.          ||+|++....       .......+.+|+.+++.++|        +|  
T Consensus         8 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~-------~~~~~~~~~~e~~~l~~~~~--------~~--   70 (279)
T cd05109           8 ELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENT-------SPKANKEILDEAYVMAGVGS--------PY--   70 (279)
T ss_pred             heeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCC-------CHHHHHHHHHHHHHHHhcCC--------CC--
Confidence            468999999999999999962          7888876432       22234678899999999988        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHH
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLV  277 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~  277 (447)
                        |+++++++.                               ....+++|||+.+| +|.+++.     +++..+..++.
T Consensus        71 --i~~~~~~~~-------------------------------~~~~~l~~~~~~~g-~l~~~l~~~~~~~~~~~~~~~~~  116 (279)
T cd05109          71 --VCRLLGICL-------------------------------TSTVQLVTQLMPYG-CLLDYVRENKDRIGSQDLLNWCV  116 (279)
T ss_pred             --CceEEEEEc-------------------------------CCCcEEEEEcCCCC-CHHHHHhhccCCCCHHHHHHHHH
Confidence              899988742                               23478999999998 8888774     78999999999


Q ss_pred             HHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE-------EEe
Q 013230          278 QVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF-------FLD  350 (447)
Q Consensus       278 Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i-------~~~  350 (447)
                      ||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+++........       ...
T Consensus       117 qi~~~L~~lH~-~~iiH~dlkp~Nil~~~~~--------------------~~kL~dfG~~~~~~~~~~~~~~~~~~~~~  175 (279)
T cd05109         117 QIAKGMSYLEE-VRLVHRDLAARNVLVKSPN--------------------HVKITDFGLARLLDIDETEYHADGGKVPI  175 (279)
T ss_pred             HHHHHHHHHHH-CCeeccccccceEEEcCCC--------------------cEEECCCCceeecccccceeecCCCccch
Confidence            99999999999 9999999999999998876                    7999999999876433211       122


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc--
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d--  427 (447)
                      .|++||...+...+...|+|+ +|.+.+++.+ +..|+..... ..+...+......+.+...+.++.+++.+||..|  
T Consensus       176 ~y~~PE~~~~~~~~~~~Di~s-lG~~l~el~t~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~  253 (279)
T cd05109         176 KWMALESILHRRFTHQSDVWS-YGVTVWELMTFGAKPYDGIPA-REIPDLLEKGERLPQPPICTIDVYMIMVKCWMIDSE  253 (279)
T ss_pred             hhCCHHHhccCCCCchhHHHH-HHHHHHHHHcCCCCCCCCCCH-HHHHHHHHCCCcCCCCccCCHHHHHHHHHHcCCChh
Confidence            478999887777777789999 9999999776 6777654322 1122233222334445567899999999999999  


Q ss_pred             ---CHHHHHc
Q 013230          428 ---SAKEAIF  434 (447)
Q Consensus       428 ---sa~elL~  434 (447)
                         |+.+++.
T Consensus       254 ~Rp~~~~l~~  263 (279)
T cd05109         254 CRPRFRELVD  263 (279)
T ss_pred             hCcCHHHHHH
Confidence               8888874

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.96  E-value=8.8e-29  Score=248.37  Aligned_cols=252  Identities=21%  Similarity=0.226  Sum_probs=182.9

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||.|+||.||+|.+      ||+|++.....        ...+.+.+|+.+++.++|        ||    |++
T Consensus         7 y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~--------~~~~~~~~Ei~~l~~l~h--------~~----i~~   66 (342)
T cd07854           7 YMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDP--------QSVKHALREIKIIRRLDH--------DN----IVK   66 (342)
T ss_pred             eEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCC--------chHHHHHHHHHHHHhcCC--------Cc----chh
Confidence            49999999999999999963      99998865421        234668899999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~  284 (447)
                      +++++...+...                .++-..+.....+|+||||+. | +|.+++.   +++..++.++.||+.||.
T Consensus        67 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~lv~e~~~-~-~L~~~~~~~~l~~~~~~~~~~qi~~aL~  128 (342)
T cd07854          67 VYEVLGPSGSDL----------------TEDVGSLTELNSVYIVQEYME-T-DLANVLEQGPLSEEHARLFMYQLLRGLK  128 (342)
T ss_pred             hHhhhccccccc----------------ccccccccccceEEEEeeccc-c-cHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            988754322100                000011223456899999997 5 8888775   899999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----C----EEEEecCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----D----IFFLDLSQDPE  356 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g----~i~~~~~~~pe  356 (447)
                      |||+ .||+||||||+|||++..+.                   .+||+|||+++.....    +    ......|++||
T Consensus       129 ~LH~-~givH~dikp~Nili~~~~~-------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE  188 (342)
T cd07854         129 YIHS-ANVLHRDLKPANVFINTEDL-------------------VLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPR  188 (342)
T ss_pred             HHHh-CCcccCCCCHHHEEEcCCCc-------------------eEEECCcccceecCCccccccccccccccccccCHH
Confidence            9999 99999999999999986542                   6899999999764321    1    12233478999


Q ss_pred             CCCC-CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHH----------------------Hhhc---cCCC---
Q 013230          357 LFSG-PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDM----------------------LLLK---KTFD---  407 (447)
Q Consensus       357 lf~g-~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~----------------------l~~~---~~~~---  407 (447)
                      .+.+ .....+.|||+ +|++.++++.+..|+............                      ....   ...+   
T Consensus       189 ~~~~~~~~~~~~DiwS-lGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (342)
T cd07854         189 LLLSPNNYTKAIDMWA-AGCIFAEMLTGKPLFAGAHELEQMQLILESVPVVREEDRNELLNVIPSFVRNDGGEPRRPLRD  267 (342)
T ss_pred             HHhCccccCchhhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcccccCCCHHH
Confidence            7644 34555679999 899999999999888543211111110                      0000   0000   


Q ss_pred             CCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          408 RSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       408 ~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                      .....+.++++||.+||+.|     |+.|+++||||+.+..+
T Consensus       268 ~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~h~~~~~~~~~  309 (342)
T cd07854         268 LLPGVNPEALDFLEQILTFNPMDRLTAEEALMHPYMSCYSCP  309 (342)
T ss_pred             HccCCCHHHHHHHHHHhCCCchhccCHHHHhCCCccccccCC
Confidence            01246789999999999999     99999999999865443

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.96  E-value=1.1e-28  Score=237.56  Aligned_cols=227  Identities=23%  Similarity=0.258  Sum_probs=179.0

Q ss_pred             CCcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|.+.++||+|+||.||+|.      .+|+|++..+.         .....+.+|+.+++.++|        +|    |+
T Consensus         7 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~---------~~~~~~~~e~~~l~~l~h--------~~----i~   65 (263)
T cd05052           7 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT---------MEVEEFLKEAAVMKEIKH--------PN----LV   65 (263)
T ss_pred             HeEEeeecCCcccceEEEEEEecCCceEEEEEecCCc---------hHHHHHHHHHHHHHhCCC--------CC----hh
Confidence            35888999999999999986      38999876321         123568899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVT  280 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil  280 (447)
                      ++++++..                              ++.++++|||+.+| +|.+++.      +++..++.++.|++
T Consensus        66 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~l~~~~~~~~~~ql~  114 (263)
T cd05052          66 QLLGVCTR------------------------------EPPFYIITEFMTYG-NLLDYLRECNRQEVNAVVLLYMATQIS  114 (263)
T ss_pred             heEEEEcC------------------------------CCCcEEEEEeCCCC-cHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence            99988432                              56689999999988 9998874      78899999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE------EEEecCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI------FFLDLSQD  354 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~------i~~~~~~~  354 (447)
                      .||+|||+ .|++||||||+|||++.++                    .+||+|||+++.......      .+...|++
T Consensus       115 ~~l~~lH~-~~i~H~dlkp~nil~~~~~--------------------~~kl~df~~~~~~~~~~~~~~~~~~~~~~y~a  173 (263)
T cd05052         115 SAMEYLEK-KNFIHRDLAARNCLVGENH--------------------LVKVADFGLSRLMTGDTYTAHAGAKFPIKWTA  173 (263)
T ss_pred             HHHHHHHh-CCEeecccCcceEEEcCCC--------------------cEEeCCCccccccccceeeccCCCCCccccCC
Confidence            99999999 9999999999999999887                    799999999987654321      11223889


Q ss_pred             CCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C
Q 013230          355 PELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S  428 (447)
Q Consensus       355 pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s  428 (447)
                      ||.+.+.....+.|+|+ +|.+.+++++ +..|+........ ...+......+.+...+.++.+|+.+||..|     |
T Consensus       174 PE~~~~~~~~~~~Dv~s-lG~il~el~t~g~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~  251 (263)
T cd05052         174 PESLAYNKFSIKSDVWA-FGVLLWEIATYGMSPYPGIDLSQV-YELLEKGYRMERPEGCPPKVYELMRACWQWNPSDRPS  251 (263)
T ss_pred             HHHhccCCCCchhHHHH-HHHHHHHHHcCCCCCCCCCCHHHH-HHHHHCCCCCCCCCCCCHHHHHHHHHHccCCcccCCC
Confidence            99998877777889999 8999999997 7777754333222 2222222233345567899999999999998     8


Q ss_pred             HHHHHc
Q 013230          429 AKEAIF  434 (447)
Q Consensus       429 a~elL~  434 (447)
                      +.++++
T Consensus       252 ~~~l~~  257 (263)
T cd05052         252 FAEIHQ  257 (263)
T ss_pred             HHHHHH
Confidence            888875

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.96  E-value=1.8e-28  Score=244.96  Aligned_cols=248  Identities=22%  Similarity=0.221  Sum_probs=181.7

Q ss_pred             hhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccc------cccchHHHHHHHHHHHhccccccC
Q 013230          127 LFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGE------AQKKSEELLEEVVLSWTLNHLRRN  194 (447)
Q Consensus       127 ~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~------~~~~~~~~~~Ei~il~~L~h~~~~  194 (447)
                      +.++|.  .+.+.||+|+||.||+|++      ||+|++...........      .......+.+|+.+++.++|    
T Consensus         6 ~~~ry~--~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h----   79 (335)
T PTZ00024          6 ISERYI--QKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKH----   79 (335)
T ss_pred             cccchh--hhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCC----
Confidence            344551  3457799999999999973      99998865432110000      00012357899999999998    


Q ss_pred             CCCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHH
Q 013230          195 EGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNIN  270 (447)
Q Consensus       195 ~~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~  270 (447)
                          +|    |+++++++..                              ++..|+||||+. | +|.+++.    +++.
T Consensus        80 ----~~----iv~~~~~~~~------------------------------~~~~~lv~e~~~-~-~l~~~l~~~~~~~~~  119 (335)
T PTZ00024         80 ----EN----IMGLVDVYVE------------------------------GDFINLVMDIMA-S-DLKKVVDRKIRLTES  119 (335)
T ss_pred             ----cc----eeeeeEEEec------------------------------CCcEEEEEeccc-c-CHHHHHHhcCCCCHH
Confidence                88    9999998643                              566999999997 5 8888775    8999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------
Q 013230          271 EARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------  344 (447)
Q Consensus       271 ~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------  344 (447)
                      .+..++.||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+++.....      
T Consensus       120 ~~~~~~~ql~~aL~~LH~-~~i~H~dl~~~nill~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~  178 (335)
T PTZ00024        120 QVKCILLQILNGLNVLHK-WYFMHRDLSPANIFINSKG--------------------ICKIADFGLARRYGYPPYSDTL  178 (335)
T ss_pred             HHHHHHHHHHHHHHHHHh-CCeecccccHHHeEECCCC--------------------CEEECCccceeecccccccccc
Confidence            999999999999999999 9999999999999999887                    7999999999865511      


Q ss_pred             -------------CEEEEecCCCCCCCCCCC-CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh--h-c--cC
Q 013230          345 -------------DIFFLDLSQDPELFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL--L-K--KT  405 (447)
Q Consensus       345 -------------g~i~~~~~~~pelf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~--~-~--~~  405 (447)
                                   +......|++||.+.+.. ...+.|+|+ +|.+.+++++|..|+....-...+..+..  . .  ..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~s-lG~~l~el~tg~~p~~~~~~~~~~~~i~~~~~~~~~~~  257 (335)
T PTZ00024        179 SKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWS-VGCIFAELLTGKPLFPGENEIDQLGRIFELLGTPNEDN  257 (335)
T ss_pred             cccccccccccccccccccCCCCChhcccCCCCCcHHHHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCchhh
Confidence                         112233478999887643 355669999 89999999999888754322221111110  0 0  00


Q ss_pred             CC---------------------CCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCC
Q 013230          406 FD---------------------RSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       406 ~~---------------------~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~  442 (447)
                      ++                     .....+.++++||++||..+     |++|+|.||||+...
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~~~~~~~~~  320 (335)
T PTZ00024        258 WPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALKHEYFKSDP  320 (335)
T ss_pred             CcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhcCcccCCCC
Confidence            00                     01235788999999999999     999999999998664

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.96  E-value=7e-29  Score=248.52  Aligned_cols=244  Identities=20%  Similarity=0.245  Sum_probs=181.9

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||.||+|++      ||+|.+....      ........+.+|+.+++.++|        +|    |++
T Consensus         7 y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------~n----i~~   68 (337)
T cd07858           7 YVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAF------DNRIDAKRTLREIKLLRHLDH--------EN----VIA   68 (337)
T ss_pred             eeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccc------cccchhHHHHHHHHHHHhcCC--------CC----ccc
Confidence            58999999999999999973      9999876432      122233567889999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++.....                         .....+|+||||+. | +|.+++.    +++..++.++.||+.||
T Consensus        69 ~~~~~~~~~~-------------------------~~~~~~~lv~e~~~-~-~L~~~~~~~~~l~~~~~~~i~~qi~~aL  121 (337)
T cd07858          69 IKDIMPPPHR-------------------------EAFNDVYIVYELMD-T-DLHQIIRSSQTLSDDHCQYFLYQLLRGL  121 (337)
T ss_pred             hHHheecccc-------------------------cccCcEEEEEeCCC-C-CHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            9987543110                         01235899999996 5 7888775    89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPELF  358 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pelf  358 (447)
                      .|||+ .+++||||||+|||++.++                    .+||+|||+++.....+     ......|++||.+
T Consensus       122 ~~LH~-~~i~H~dlkp~Nil~~~~~--------------------~~kL~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~  180 (337)
T cd07858         122 KYIHS-ANVLHRDLKPSNLLLNANC--------------------DLKICDFGLARTTSEKGDFMTEYVVTRWYRAPELL  180 (337)
T ss_pred             HHHHh-CCEecCCCCHHHEEEcCCC--------------------CEEECcCccccccCCCcccccccccccCccChHHH
Confidence            99999 9999999999999999887                    79999999998764431     1223458899987


Q ss_pred             CC-CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHH---H--------------------H---HhhccCC---CC
Q 013230          359 SG-PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLV---D--------------------M---LLLKKTF---DR  408 (447)
Q Consensus       359 ~g-~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~---~--------------------~---l~~~~~~---~~  408 (447)
                      .+ .....+.|+|+ +|.+.++++.+..|+..........   .                    .   +......   ..
T Consensus       181 ~~~~~~~~~~Diws-lG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (337)
T cd07858         181 LNCSEYTTAIDVWS-VGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEKARRYIRSLPYTPRQSFARL  259 (337)
T ss_pred             hcCCCCCCcccHHH-HHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcCchhhhHHHHhcCcccccCHHHH
Confidence            54 34556679999 8999999999887775322111000   0                    0   0000000   01


Q ss_pred             CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          409 SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       409 ~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                      ....++++++||++||+.|     |++|+++||||..+..+
T Consensus       260 ~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~~~~~  300 (337)
T cd07858         260 FPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLASLHDP  300 (337)
T ss_pred             cccCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhhhcCc
Confidence            2357889999999999999     99999999999876543

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.96  E-value=7e-29  Score=244.74  Aligned_cols=231  Identities=17%  Similarity=0.177  Sum_probs=174.9

Q ss_pred             CCCcceEEeccccceEEEEece--------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCcc
Q 013230          132 SDPENIVKVGEGTFGEAFLAGN--------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNAC  202 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~~--------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~  202 (447)
                      .+|++.+.||+|+||.||+|.+        +|+|.+...       ........+.+|+.++.++ +|        +|  
T Consensus         7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~-------~~~~~~~~~~~Ei~~l~~l~~h--------~~--   69 (303)
T cd05088           7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY-------ASKDDHRDFAGELEVLCKLGHH--------PN--   69 (303)
T ss_pred             hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEeccc-------CCHHHHHHHHHHHHHHHHhcCC--------CC--
Confidence            3458999999999999999962        466654421       1223345678899999999 66        77  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----------------
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----------------  266 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----------------  266 (447)
                        |+++++++..                              ++..|+||||+.+| +|.+++.                
T Consensus        70 --iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~  116 (303)
T cd05088          70 --IINLLGACEH------------------------------RGYLYLAIEYAPHG-NLLDFLRKSRVLETDPAFAIANS  116 (303)
T ss_pred             --cceEEEEECC------------------------------CCCceEEEEeCCCC-cHHHHHHhccccccccccccccc
Confidence              9999998532                              56699999999988 9988873                


Q ss_pred             ----CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC
Q 013230          267 ----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT  342 (447)
Q Consensus       267 ----l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~  342 (447)
                          +++..++.++.||+.||+|||+ +||+||||||+|||++.++                    .+||+|||+++...
T Consensus       117 ~~~~l~~~~~~~~~~qi~~al~~LH~-~gi~H~dlkp~Nili~~~~--------------------~~kl~dfg~~~~~~  175 (303)
T cd05088         117 TASTLSSQQLLHFAADVARGMDYLSQ-KQFIHRDLAARNILVGENY--------------------VAKIADFGLSRGQE  175 (303)
T ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHHh-CCccccccchheEEecCCC--------------------cEEeCccccCcccc
Confidence                5788999999999999999999 9999999999999999887                    79999999986432


Q ss_pred             CC---C-EEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHH
Q 013230          343 GE---D-IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLR  417 (447)
Q Consensus       343 ~~---g-~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~  417 (447)
                      ..   . ......|++||.+.+...+...|+|+ +|.+.+++.+ +..|+......... +.+......+.+...++++.
T Consensus       176 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s-lG~il~ellt~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  253 (303)
T cd05088         176 VYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWS-YGVLLWEIVSLGGTPYCGMTCAELY-EKLPQGYRLEKPLNCDDEVY  253 (303)
T ss_pred             hhhhcccCCCcccccCHHHHhccCCcccccchh-hhhHHHHHHhcCCCCcccCChHHHH-HHHhcCCcCCCCCCCCHHHH
Confidence            11   1 11123478999887766666779999 9999999987 78887543322222 22221222333445788999


Q ss_pred             HHHHHhcccc-----CHHHHHcC
Q 013230          418 SLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       418 dLl~~mL~~d-----sa~elL~H  435 (447)
                      +|+.+||+.+     |+++++++
T Consensus       254 ~li~~~l~~~p~~Rp~~~~il~~  276 (303)
T cd05088         254 DLMRQCWREKPYERPSFAQILVS  276 (303)
T ss_pred             HHHHHHcCCChhhCcCHHHHHHH
Confidence            9999999999     88888864

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.96  E-value=1.5e-28  Score=238.50  Aligned_cols=229  Identities=20%  Similarity=0.201  Sum_probs=175.6

Q ss_pred             CcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          134 PENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      |++.+.||+|+||.||+|.           .+|+|++...       ........+.+|+.+++.++|        +|  
T Consensus         8 ~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~-------~~~~~~~~~~~e~~~l~~l~~--------~~--   70 (277)
T cd05062           8 ITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEA-------ASMRERIEFLNEASVMKEFNC--------HH--   70 (277)
T ss_pred             ceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEecccc-------CCHHHHHHHHHHHHHHHhCCC--------CC--
Confidence            4899999999999999875           2888876432       112233568899999999988        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------------CC
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------------LN  268 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------------l~  268 (447)
                        |+++++++..                              ....++||||+.+| +|.+++.              ++
T Consensus        71 --iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~  117 (277)
T cd05062          71 --VVRLLGVVSQ------------------------------GQPTLVIMELMTRG-DLKSYLRSLRPEMENNPVQAPPS  117 (277)
T ss_pred             --eeeEEEEEcC------------------------------CCCeEEEEecCCCC-CHHHHHHHcCccccccccccCCC
Confidence              9999988432                              45689999999988 9998874              35


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE--
Q 013230          269 INEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI--  346 (447)
Q Consensus       269 ~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~--  346 (447)
                      ...+..++.|++.||+|||+ .|++||||||+|||++.++                    .+||+|||+++.......  
T Consensus       118 ~~~~~~~~~~l~~~l~~lH~-~~~vH~dlkp~Nil~~~~~--------------------~~~l~dfg~~~~~~~~~~~~  176 (277)
T cd05062         118 LKKMIQMAGEIADGMAYLNA-NKFVHRDLAARNCMVAEDF--------------------TVKIGDFGMTRDIYETDYYR  176 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-CCcccCCcchheEEEcCCC--------------------CEEECCCCCccccCCcceee
Confidence            56788899999999999999 9999999999999999887                    799999999875432211  


Q ss_pred             -----EEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHH
Q 013230          347 -----FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLK  420 (447)
Q Consensus       347 -----i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl  420 (447)
                           .....|++||.+.+...+...|+|+ +|.+.+++++ +..|+............. .....+.+...+..+++|+
T Consensus       177 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s-lG~~l~el~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li  254 (277)
T cd05062         177 KGGKGLLPVRWMSPESLKDGVFTTYSDVWS-FGVVLWEIATLAEQPYQGMSNEQVLRFVM-EGGLLDKPDNCPDMLFELM  254 (277)
T ss_pred             cCCCCccCHhhcChhHhhcCCcCchhHHHH-HHHHHHHHHcCCCCCCCCCCHHHHHHHHH-cCCcCCCCCCCCHHHHHHH
Confidence                 1122488999998777777789999 9999999987 566765443322222222 2222333456788999999


Q ss_pred             HHhcccc-----CHHHHHcC
Q 013230          421 KRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       421 ~~mL~~d-----sa~elL~H  435 (447)
                      .+||+.|     |+.|++++
T Consensus       255 ~~~l~~~p~~Rps~~e~l~~  274 (277)
T cd05062         255 RMCWQYNPKMRPSFLEIISS  274 (277)
T ss_pred             HHHcCCChhhCcCHHHHHHH
Confidence            9999999     99998864

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.96  E-value=1.2e-28  Score=237.54  Aligned_cols=236  Identities=19%  Similarity=0.189  Sum_probs=180.6

Q ss_pred             CcceEEeccccceEEEEec---------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          134 PENIVKVGEGTFGEAFLAG---------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~---------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      |++.+.||+|+||.||+|.         .+|+|.+....      ........+.+|+.+++.++|        +|    
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~------~~~~~~~~~~~e~~~l~~l~h--------~~----   62 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDI------HTYSEIEEFLSEAACMKDFDH--------PN----   62 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCc------CCHHHHHHHHHHHHHHHhCCC--------CC----
Confidence            4788999999999999986         28999876432      122334678999999999998        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----------CCHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----------LNINEARS  274 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----------l~~~~~~~  274 (447)
                      |+++++++.....                        .......+++|||+.+| +|..++.          +++..++.
T Consensus        63 iv~~~~~~~~~~~------------------------~~~~~~~~~v~e~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~  117 (273)
T cd05035          63 VMKLIGVCFEASS------------------------LQKIPKPMVILPFMKHG-DLHSFLLYSRLGGLPEKLPLQTLLK  117 (273)
T ss_pred             eeeEEeeeccCCc------------------------cccCcccEEEEeccCCC-CHHHHHHHhhccCCcccCCHHHHHH
Confidence            9999988543110                        11124579999999988 9988762          78899999


Q ss_pred             HHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----E--
Q 013230          275 LLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----F--  347 (447)
Q Consensus       275 i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i--  347 (447)
                      ++.|++.||+|||+ .+|+||||||+|||++.++                    .+||+|||+++.......     .  
T Consensus       118 ~~~~i~~aL~~lH~-~~i~H~dlkp~Nil~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~  176 (273)
T cd05035         118 FMVDIALGMEYLSN-RNFIHRDLAARNCMLREDM--------------------TVCVADFGLSKKIYSGDYYRQGRIAK  176 (273)
T ss_pred             HHHHHHHHHHHHHh-CCeeccccchheEEECCCC--------------------eEEECCccceeecccccccccccccc
Confidence            99999999999999 9999999999999999887                    799999999987543321     1  


Q ss_pred             EEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhccc
Q 013230          348 FLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKY  426 (447)
Q Consensus       348 ~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~  426 (447)
                      ....|++|+.+.+.......|+|+ +|.+.++++. +..|+......... +.+......+.+...+.++.+++.+||..
T Consensus       177 ~~~~~~~pe~~~~~~~~~~~Dv~S-lG~il~el~~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~li~~~l~~  254 (273)
T cd05035         177 MPVKWIAIESLADRVYTSKSDVWA-FGVTMWEIATRGQTPYPGVENHEIY-DYLRHGNRLKQPEDCLDELYDLMYSCWRA  254 (273)
T ss_pred             CCccccCHhhcccCCCCcccchHH-HHHHHHHHHhCCCCCCCCCCHHHHH-HHHHcCCCCCCCcCCCHHHHHHHHHHcCC
Confidence            112478888887766677779999 8999999988 77777554333322 22222233444567889999999999999


Q ss_pred             c-----CHHHHHcC
Q 013230          427 N-----SAKEAIFD  435 (447)
Q Consensus       427 d-----sa~elL~H  435 (447)
                      |     |+.|++++
T Consensus       255 ~p~~Rp~~~e~~~~  268 (273)
T cd05035         255 DPKDRPTFTKLREV  268 (273)
T ss_pred             ChhhCcCHHHHHHH
Confidence            8     88888764

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=5.8e-30  Score=249.31  Aligned_cols=242  Identities=17%  Similarity=0.190  Sum_probs=195.3

Q ss_pred             CCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccce
Q 013230          132 SDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~i  205 (447)
                      .+|..+..||+|+||+|.+|..      +|||+++++-.+  +   ....+-.+.|-++|.....       +|.    +
T Consensus       349 tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDVii--Q---dDDvectm~EKrvLAL~~k-------ppF----L  412 (683)
T KOG0696|consen  349 TDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVII--Q---DDDVECTMVEKRVLALPGK-------PPF----L  412 (683)
T ss_pred             cccceEEEeccCccceeeeecccCcchhhhhhhhccceee--e---cCcccceehhhhheecCCC-------Cch----H
Confidence            4689999999999999999963      999998866432  1   1122334677788776554       144    8


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTA  281 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~  281 (447)
                      ++++.+                              +.+-+.+|+||||+.|| ||-..|+    |.+..+.+++.+|+.
T Consensus       413 ~qlHSc------------------------------FQTmDRLyFVMEyvnGG-DLMyhiQQ~GkFKEp~AvFYAaEiai  461 (683)
T KOG0696|consen  413 VQLHSC------------------------------FQTMDRLYFVMEYVNGG-DLMYHIQQVGKFKEPVAVFYAAEIAI  461 (683)
T ss_pred             HHHHHH------------------------------hhhhhheeeEEEEecCc-hhhhHHHHhcccCCchhhhhhHHHHH
Confidence            888887                              44578899999999999 8876665    999999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE---E--EEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI---F--FLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~---i--~~~~~~~pe  356 (447)
                      ||-|||+ .|||.||||.+|||++.++                    +|||+|||+++...-.|.   .  ...-|++||
T Consensus       462 gLFFLh~-kgIiYRDLKLDNvmLd~eG--------------------HiKi~DFGmcKEni~~~~TTkTFCGTPdYiAPE  520 (683)
T KOG0696|consen  462 GLFFLHS-KGIIYRDLKLDNVMLDSEG--------------------HIKIADFGMCKENIFDGVTTKTFCGTPDYIAPE  520 (683)
T ss_pred             Hhhhhhc-CCeeeeeccccceEeccCC--------------------ceEeeecccccccccCCcceeeecCCCcccccc
Confidence            9999999 9999999999999999998                    899999999998655543   2  233489999


Q ss_pred             CCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc---------
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN---------  427 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d---------  427 (447)
                      +.....+....|.|+ .|+.+++|+.|..||....-......+.  ......|+.+|.|+.++.+.+|.+.         
T Consensus       521 Ii~YqPYgksvDWWa-~GVLLyEmlaGQpPFdGeDE~elF~aI~--ehnvsyPKslSkEAv~ickg~ltK~P~kRLGcg~  597 (683)
T KOG0696|consen  521 IIAYQPYGKSVDWWA-FGVLLYEMLAGQPPFDGEDEDELFQAIM--EHNVSYPKSLSKEAVAICKGLLTKHPGKRLGCGP  597 (683)
T ss_pred             eEEecccccchhHHH-HHHHHHHHHcCCCCCCCCCHHHHHHHHH--HccCcCcccccHHHHHHHHHHhhcCCccccCCCC
Confidence            998888888889999 9999999999999998765544445554  3344445789999999999999998         


Q ss_pred             -CHHHHHcCCCCCCCCCC
Q 013230          428 -SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       428 -sa~elL~HPff~~~~~~  444 (447)
                       .-.++-.||||+.+.++
T Consensus       598 ~ge~di~~H~FFR~iDWe  615 (683)
T KOG0696|consen  598 EGERDIREHPFFRRIDWE  615 (683)
T ss_pred             ccccchhhCcchhhccHH
Confidence             45789999999987553

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.96  E-value=1.7e-28  Score=236.84  Aligned_cols=229  Identities=17%  Similarity=0.177  Sum_probs=179.0

Q ss_pred             CCcceEEeccccceEEEEece---------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN---------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACT  203 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~---------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~  203 (447)
                      +|++.+.||+|+||.||+|..         +|+|.+....       .......+.+|+.+++.++|        ||   
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~-------~~~~~~~~~~e~~~l~~l~h--------~~---   66 (267)
T cd05066           5 CIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGY-------TEKQRRDFLSEASIMGQFDH--------PN---   66 (267)
T ss_pred             HeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCC-------CHHHHHHHHHHHHHHHhCCC--------CC---
Confidence            358899999999999999863         7788765321       12234678999999999988        88   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHH
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQ  278 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Q  278 (447)
                       |+++++++..                              ++..|+||||+.+| +|.+++.     ++...+..++.|
T Consensus        67 -i~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~i~~~  114 (267)
T cd05066          67 -IIHLEGVVTK------------------------------SKPVMIVTEYMENG-SLDAFLRKHDGQFTVIQLVGMLRG  114 (267)
T ss_pred             -cceEEEEEec------------------------------CCccEEEEEcCCCC-CHHHHHHhcCCCCCHHHHHHHHHH
Confidence             9999998532                              46689999999988 9999875     788999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-EEE-------Ee
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-IFF-------LD  350 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-~i~-------~~  350 (447)
                      ++.||+|||+ .|++||||||+|||++.++                    .++|+|||+++...... +..       ..
T Consensus       115 i~~~l~~lH~-~~i~h~dlkp~nili~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~  173 (267)
T cd05066         115 IASGMKYLSD-MGYVHRDLAARNILVNSNL--------------------VCKVSDFGLSRVLEDDPEAAYTTRGGKIPI  173 (267)
T ss_pred             HHHHHHHHHH-CCEeehhhchhcEEECCCC--------------------eEEeCCCCcccccccccceeeecCCCccce
Confidence            9999999999 9999999999999999887                    79999999998754331 111       12


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc--
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d--  427 (447)
                      .|++||.+.+.......|+|+ +|.+.++++. |..|+......... ..+......+.+...++.+.+|+.+||+.+  
T Consensus       174 ~y~~pe~~~~~~~~~~~Dv~s-lG~~l~ell~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  251 (267)
T cd05066         174 RWTAPEAIAYRKFTSASDVWS-YGIVMWEVMSYGERPYWEMSNQDVI-KAIEEGYRLPAPMDCPAALHQLMLDCWQKDRN  251 (267)
T ss_pred             eecCHhHhccCccCchhhhHH-HHHHHHHHhcCCCCCcccCCHHHHH-HHHhCCCcCCCCCCCCHHHHHHHHHHcccCch
Confidence            378999998877777789999 8999998776 88887654332222 222222334545567889999999999998  


Q ss_pred             ---CHHHHHc
Q 013230          428 ---SAKEAIF  434 (447)
Q Consensus       428 ---sa~elL~  434 (447)
                         |+.++++
T Consensus       252 ~Rp~~~~i~~  261 (267)
T cd05066         252 ERPKFEQIVS  261 (267)
T ss_pred             hCCCHHHHHH
Confidence               8888764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.96  E-value=2.3e-28  Score=236.63  Aligned_cols=231  Identities=21%  Similarity=0.251  Sum_probs=179.3

Q ss_pred             CCcceEEeccccceEEEEece-----------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN-----------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA  201 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~-----------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~  201 (447)
                      +|+.++.||+|+||.||+|+.           +|+|.+...       ........+.+|+.++++++|        +| 
T Consensus         6 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~-------~~~~~~~~~~~E~~~l~~l~h--------~~-   69 (275)
T cd05046           6 NLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKT-------KDENLQSEFRRELDMFRKLSH--------KN-   69 (275)
T ss_pred             hceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCc-------cchHHHHHHHHHHHHHHhcCC--------cc-
Confidence            458999999999999999972           777765432       112234678999999999988        88 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------------CC
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------------LN  268 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------------l~  268 (447)
                         |+++++++.                              ..+..|+||||+.+| +|.+++.             ++
T Consensus        70 ---iv~~~~~~~------------------------------~~~~~~lv~e~~~~~-~L~~~i~~~~~~~~~~~~~~l~  115 (275)
T cd05046          70 ---VVRLLGLCR------------------------------EAEPHYMILEYTDLG-DLKQFLRATKSKDEKLKPPPLS  115 (275)
T ss_pred             ---eeeeEEEEC------------------------------CCCcceEEEEecCCC-cHHHHHHhcccccccccccCCC
Confidence               999998842                              245689999999988 9998864             57


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----
Q 013230          269 INEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----  344 (447)
Q Consensus       269 ~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----  344 (447)
                      +..+..++.||+.||+|||+ .||+||||||+|||++.++                    .++|+|||+++.....    
T Consensus       116 ~~~~~~~~~~l~~~l~~LH~-~~i~H~dlkp~Nili~~~~--------------------~~~l~~~~~~~~~~~~~~~~  174 (275)
T cd05046         116 TKQKVALCTQIALGMDHLSN-ARFVHRDLAARNCLVSSQR--------------------EVKVSLLSLSKDVYNSEYYK  174 (275)
T ss_pred             HHHHHHHHHHHHHHHHHhhh-cCcccCcCccceEEEeCCC--------------------cEEEcccccccccCcccccc
Confidence            89999999999999999999 9999999999999999987                    7999999998754321    


Q ss_pred             --CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHH
Q 013230          345 --DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKK  421 (447)
Q Consensus       345 --g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~  421 (447)
                        +......|++||...+.......|+|+ +|.+.++++. +..|+..................++.+...+..+.+++.
T Consensus       175 ~~~~~~~~~y~~PE~~~~~~~~~~~Di~s-lG~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~  253 (275)
T cd05046         175 LRNALIPLRWLAPEAVQEDDFSTKSDVWS-FGVLMWEVFTQGELPFYGLSDEEVLNRLQAGKLELPVPEGCPSRLYKLMT  253 (275)
T ss_pred             cCCceeEEeecChhhhccCCCCchhhHHH-HHHHHHHHHhCCCCCccccchHHHHHHHHcCCcCCCCCCCCCHHHHHHHH
Confidence              222333488999887766666779999 9999999887 667775443333333333222234444567889999999


Q ss_pred             Hhcccc-----CHHHHHcC
Q 013230          422 RLDKYN-----SAKEAIFD  435 (447)
Q Consensus       422 ~mL~~d-----sa~elL~H  435 (447)
                      +||+.|     |+.|++++
T Consensus       254 ~~l~~~p~~Rp~~~~~l~~  272 (275)
T cd05046         254 RCWAVNPKDRPSFSELVSA  272 (275)
T ss_pred             HHcCCCcccCCCHHHHHHH
Confidence            999998     99998864

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.96  E-value=2.1e-28  Score=238.53  Aligned_cols=232  Identities=20%  Similarity=0.235  Sum_probs=176.1

Q ss_pred             CcceEEeccccceEEEEec----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccc
Q 013230          134 PENIVKVGEGTFGEAFLAG----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACT  203 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~  203 (447)
                      |+++++||+|+||.||+|+          .+|+|.+....       .......+.+|+.+++.++|        +|   
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~-------~~~~~~~~~~e~~~l~~l~h--------~~---   67 (284)
T cd05079           6 LKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES-------GGNHIADLKKEIEILRNLYH--------EN---   67 (284)
T ss_pred             hhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccc-------cHHHHHHHHHHHHHHHhCCC--------CC---
Confidence            5889999999999999885          28999876331       22334678999999999988        88   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHH
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQ  278 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Q  278 (447)
                       |+++++++...+                            ....|+||||+.|| +|.+++.     +++..+..++.|
T Consensus        68 -i~~~~~~~~~~~----------------------------~~~~~lv~e~~~g~-~L~~~l~~~~~~~~~~~~~~i~~~  117 (284)
T cd05079          68 -IVKYKGICTEDG----------------------------GNGIKLIMEFLPSG-SLKEYLPRNKNKINLKQQLKYAVQ  117 (284)
T ss_pred             -eeeeeeEEecCC----------------------------CCceEEEEEccCCC-CHHHHHHhccCCCCHHHHHHHHHH
Confidence             999998854311                            35589999999988 9999874     789999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-------E-EEEe
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-------I-FFLD  350 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-------~-i~~~  350 (447)
                      |+.||+|||+ .||+||||||+|||++.++                    .+||+|||+++......       . ....
T Consensus       118 i~~aL~~lH~-~gi~H~dlkp~Nil~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~  176 (284)
T cd05079         118 ICKGMDYLGS-RQYVHRDLAARNVLVESEH--------------------QVKIGDFGLTKAIETDKEYYTVKDDLDSPV  176 (284)
T ss_pred             HHHHHHHHHH-CCeeecccchheEEEcCCC--------------------CEEECCCccccccccCccceeecCCCCCCc
Confidence            9999999999 9999999999999999887                    79999999998654321       1 1112


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChh--------------HHHHHHHHHHhhccCCCCCccchHHH
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV--------------LWLVYLVDMLLLKKTFDRSSKDERDL  416 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~--------------~~~~~~~~~l~~~~~~~~~~~~s~~l  416 (447)
                      .|++||.+.+.....+.|||+ +|.+.+++.++..|....              .........+......+.+...+.++
T Consensus       177 ~y~apE~~~~~~~~~~~Di~s-lG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (284)
T cd05079         177 FWYAPECLIQSKFYIASDVWS-FGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLEEGKRLPRPPNCPEEV  255 (284)
T ss_pred             cccCHHHhccCCCCccccchh-hhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHHHHHcCccCCCCCCCCHHH
Confidence            377899887766677789999 899998887754332211              01111122222223344455688999


Q ss_pred             HHHHHHhcccc-----CHHHHHcC
Q 013230          417 RSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       417 ~dLl~~mL~~d-----sa~elL~H  435 (447)
                      .+|+.+||+.|     |+++++++
T Consensus       256 ~~li~~~l~~~p~~Rpt~~~il~~  279 (284)
T cd05079         256 YQLMRKCWEFQPSKRTTFQNLIEG  279 (284)
T ss_pred             HHHHHHHccCCcccCcCHHHHHHH
Confidence            99999999998     99998864

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.96  E-value=8.9e-29  Score=242.94  Aligned_cols=237  Identities=24%  Similarity=0.310  Sum_probs=185.0

Q ss_pred             cceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      +...+||+|+||.||++..      +|+|++....        ......+.+|+.+++.++|        +|    |+++
T Consensus        23 ~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~--------~~~~~~~~~e~~~l~~l~h--------~~----iv~~   82 (292)
T cd06657          23 DNFIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRK--------QQRRELLFNEVVIMRDYQH--------EN----VVEM   82 (292)
T ss_pred             hhHHHcCCCCCeEEEEEEEcCCCeEEEEEEecccc--------hhHHHHHHHHHHHHHhcCC--------cc----hhhe
Confidence            3447899999999999863      8999875321        1234568899999999988        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLAV  285 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~y  285 (447)
                      ++.+..                              .+..|+||||+.+| +|.+++.   +++..++.++.|++.||+|
T Consensus        83 ~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~ql~~~l~~  131 (292)
T cd06657          83 YNSYLV------------------------------GDELWVVMEFLEGG-ALTDIVTHTRMNEEQIAAVCLAVLKALSV  131 (292)
T ss_pred             eeEEEe------------------------------CCEEEEEEecCCCC-cHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            998654                              56799999999987 8988875   8999999999999999999


Q ss_pred             HHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCCCCC
Q 013230          286 AEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPELFSG  360 (447)
Q Consensus       286 lH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pelf~g  360 (447)
                      ||+ .||+||||||+||+++.++                    .++|+|||++.......     ......|++||.+.+
T Consensus       132 lH~-~givH~dl~p~Nilv~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~pE~~~~  190 (292)
T cd06657         132 LHA-QGVIHRDIKSDSILLTHDG--------------------RVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISR  190 (292)
T ss_pred             HHH-CCeecCCCCHHHEEECCCC--------------------CEEEcccccceecccccccccccccCccccCHHHhcC
Confidence            999 9999999999999999887                    79999999987543221     112234789998877


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh-hccCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL-LKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~-~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      .....+.|+|+ +|.+.+++..|..|+.............. ....+......++++.+|+.+||..|     ++.++++
T Consensus       191 ~~~~~~~Dv~s-lGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~R~~~~~ll~  269 (292)
T cd06657         191 LPYGPEVDIWS-LGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK  269 (292)
T ss_pred             CCCCchhhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHhhCCcccCCcccCCHHHHHHHHHHHhCCcccCcCHHHHhc
Confidence            66667779999 89999999999988765432222221110 01223333457889999999999999     9999999


Q ss_pred             CCCCCCCCCC
Q 013230          435 DPFFSDLIVD  444 (447)
Q Consensus       435 HPff~~~~~~  444 (447)
                      ||||.....+
T Consensus       270 ~~~~~~~~~~  279 (292)
T cd06657         270 HPFLAKAGPP  279 (292)
T ss_pred             ChHHhccCCC
Confidence            9999877543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.96  E-value=1.8e-28  Score=239.64  Aligned_cols=227  Identities=22%  Similarity=0.246  Sum_probs=178.7

Q ss_pred             CCcceEEeccccceEEEEece-----------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN-----------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA  201 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~-----------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~  201 (447)
                      +|.+.+.||+|+||.||+|..           +|+|.+...        .......+.+|+.++++++|        +| 
T Consensus         6 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~--------~~~~~~~~~~e~~~l~~l~h--------~~-   68 (288)
T cd05093           6 NIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA--------SDNARKDFHREAELLTNLQH--------EH-   68 (288)
T ss_pred             HeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCc--------CHHHHHHHHHHHHHHHhCCC--------CC-
Confidence            468899999999999999862           777776532        12234578999999999988        88 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------------
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------------  266 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------------  266 (447)
                         |+++++++..                              .+..|+||||+.+| +|.+++.               
T Consensus        69 ---i~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~i~~~~~~~~~~~~~~~~  114 (288)
T cd05093          69 ---IVKFYGVCVE------------------------------GDPLIMVFEYMKHG-DLNKFLRAHGPDAVLMAEGNRP  114 (288)
T ss_pred             ---cceEEEEEec------------------------------CCccEEEEEcCCCC-CHHHHHHHcCCccccccccCCC
Confidence               9999998542                              46689999999988 9988874               


Q ss_pred             --CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC
Q 013230          267 --LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE  344 (447)
Q Consensus       267 --l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~  344 (447)
                        +++..+..++.||+.||+|||+ .|++||||||+|||++.++                    .+||+|||+++.....
T Consensus       115 ~~l~~~~~~~~~~ql~~aL~~lH~-~~i~H~dlkp~Nili~~~~--------------------~~kl~dfg~~~~~~~~  173 (288)
T cd05093         115 AELTQSQMLHIAQQIAAGMVYLAS-QHFVHRDLATRNCLVGENL--------------------LVKIGDFGMSRDVYST  173 (288)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh-CCeeecccCcceEEEccCC--------------------cEEeccCCccccccCC
Confidence              7889999999999999999999 9999999999999999887                    7999999999865332


Q ss_pred             CE-------EEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHH
Q 013230          345 DI-------FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDL  416 (447)
Q Consensus       345 g~-------i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l  416 (447)
                      ..       .....|++||.+.+.....+.|+|+ +|.+.+++++ +..|+...........+. .....+.+...+.++
T Consensus       174 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiws-lG~il~~l~t~g~~p~~~~~~~~~~~~i~-~~~~~~~~~~~~~~l  251 (288)
T cd05093         174 DYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWS-LGVVLWEIFTYGKQPWYQLSNNEVIECIT-QGRVLQRPRTCPKEV  251 (288)
T ss_pred             ceeecCCCCCccccccCHHHhccCCCCchhhHHH-HHHHHHHHHhCCCCCCCCCCHHHHHHHHH-cCCcCCCCCCCCHHH
Confidence            21       1122478999998877777889999 8999999998 778876543333333332 222333345678899


Q ss_pred             HHHHHHhcccc-----CHHHHH
Q 013230          417 RSLKKRLDKYN-----SAKEAI  433 (447)
Q Consensus       417 ~dLl~~mL~~d-----sa~elL  433 (447)
                      .+|+.+||+.|     |+.+++
T Consensus       252 ~~li~~~l~~~p~~Rpt~~~v~  273 (288)
T cd05093         252 YDLMLGCWQREPHMRLNIKEIH  273 (288)
T ss_pred             HHHHHHHccCChhhCCCHHHHH
Confidence            99999999999     888874

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.96  E-value=1.3e-28  Score=243.03  Aligned_cols=229  Identities=21%  Similarity=0.247  Sum_probs=176.6

Q ss_pred             CcceEEeccccceEEEEec-------------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCC
Q 013230          134 PENIVKVGEGTFGEAFLAG-------------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTL  199 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-------------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~  199 (447)
                      |.+.+.||+|+||.||+|+             .+|+|.+....       .......+.+|+.+++.+ +|        +
T Consensus        20 ~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~-------~~~~~~~~~~e~~~l~~l~~h--------~   84 (307)
T cd05098          20 LVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDA-------TEKDLSDLISEMEMMKMIGKH--------K   84 (307)
T ss_pred             eEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCC-------ChHHHHHHHHHHHHHHHhcCC--------C
Confidence            4899999999999999985             28888776321       122335688899999999 56        6


Q ss_pred             CcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------------
Q 013230          200 NACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------------  266 (447)
Q Consensus       200 n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------------  266 (447)
                      |    |+++++++..                              .+..|+||||+.+| +|.+++.             
T Consensus        85 ~----i~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~i~~~~~~~~~~~~~~  129 (307)
T cd05098          85 N----IINLLGACTQ------------------------------DGPLYVIVEYASKG-NLREYLRARRPPGMEYCYNP  129 (307)
T ss_pred             C----EeeEEEEEec------------------------------CCceEEEEecCCCC-cHHHHHHhcCCccccccccc
Confidence            7    9999998543                              45689999999988 9988873             


Q ss_pred             -------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeecccee
Q 013230          267 -------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSR  339 (447)
Q Consensus       267 -------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~  339 (447)
                             ++...+..++.|++.||+|||+ +|++||||||+|||++.++                    .+||+|||+++
T Consensus       130 ~~~~~~~l~~~~~~~~~~qi~~aL~~lH~-~gi~H~dlkp~Nill~~~~--------------------~~kL~dfg~a~  188 (307)
T cd05098         130 TQVPEEQLSFKDLVSCAYQVARGMEYLAS-KKCIHRDLAARNVLVTEDN--------------------VMKIADFGLAR  188 (307)
T ss_pred             ccCccccCCHHHHHHHHHHHHHHHHHHHH-CCcccccccHHheEEcCCC--------------------cEEECCCcccc
Confidence                   5778899999999999999999 9999999999999999887                    79999999997


Q ss_pred             ecCCC-----C--EEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCcc
Q 013230          340 INTGE-----D--IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSK  411 (447)
Q Consensus       340 ~~~~~-----g--~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~  411 (447)
                      .....     .  ......|++||.+.+.......|+|+ +|.+.++++. +..|+...... .+.+.+......+.+..
T Consensus       189 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dvws-lG~~l~el~~~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~  266 (307)
T cd05098         189 DIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWS-FGVLLWEIFTLGGSPYPGVPVE-ELFKLLKEGHRMDKPSN  266 (307)
T ss_pred             cccccchhhccccCCCccceeChHHhccCCCCcHHHHHH-HHHHHHHHHcCCCCCCCcCCHH-HHHHHHHcCCCCCCCCc
Confidence            64321     1  11123478999888777777789999 8999999987 66776543322 22223322233344556


Q ss_pred             chHHHHHHHHHhcccc-----CHHHHHcC
Q 013230          412 DERDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       412 ~s~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      .+.++++|+.+||..+     |+.+++++
T Consensus       267 ~~~~~~~li~~~l~~~p~~Rps~~evl~~  295 (307)
T cd05098         267 CTNELYMMMRDCWHAVPSQRPTFKQLVED  295 (307)
T ss_pred             CCHHHHHHHHHHcccChhhCcCHHHHHHH
Confidence            7899999999999988     88888754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.8e-30  Score=258.36  Aligned_cols=242  Identities=17%  Similarity=0.175  Sum_probs=204.3

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +++.+..||-|+||.|-+++.      +|+|++++...     ...+..+++..|-+||..++.        |.    ||
T Consensus       421 dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hI-----VdtkQqeHv~sEr~Im~~~~s--------~f----Iv  483 (732)
T KOG0614|consen  421 DLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHI-----VDTKQQEHVFSERNIMMECRS--------DF----IV  483 (732)
T ss_pred             hhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhc-----cchhHHHHHHhHHHHHHhcCc--------hH----HH
Confidence            458889999999999998872      88998876654     344556889999999999987        66    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++|..|                              .++..+|+.||-|-|| .|-..++    |++..+++++..++.|
T Consensus       484 rLYrTf------------------------------rd~kyvYmLmEaClGG-ElWTiLrdRg~Fdd~tarF~~acv~EA  532 (732)
T KOG0614|consen  484 RLYRTF------------------------------RDSKYVYMLMEACLGG-ELWTILRDRGSFDDYTARFYVACVLEA  532 (732)
T ss_pred             HHHHHh------------------------------ccchhhhhhHHhhcCc-hhhhhhhhcCCcccchhhhhHHHHHHH
Confidence            999884                              3367799999999999 8888877    9999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE--EE--EecCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI--FF--LDLSQDPELF  358 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~--i~--~~~~~~pelf  358 (447)
                      ++|||+ +|||.|||||||.|++.++                    .+||.|||+|+....++-  .|  ..-|.+||+.
T Consensus       533 feYLH~-k~iIYRDLKPENllLd~~G--------------------y~KLVDFGFAKki~~g~KTwTFcGTpEYVAPEII  591 (732)
T KOG0614|consen  533 FEYLHR-KGIIYRDLKPENLLLDNRG--------------------YLKLVDFGFAKKIGSGRKTWTFCGTPEYVAPEII  591 (732)
T ss_pred             HHHHHh-cCceeccCChhheeeccCC--------------------ceEEeehhhHHHhccCCceeeecCCcccccchhh
Confidence            999999 9999999999999999998                    799999999998877643  22  2338899999


Q ss_pred             CCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----------C
Q 013230          359 SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----------S  428 (447)
Q Consensus       359 ~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----------s  428 (447)
                      .....+...|.|+ +|+..++.+.|..||.....+.....++.+=.....|..+...+.+||++|++.+          .
T Consensus       592 LnKGHD~avDyWa-LGIli~ELL~G~pPFs~~dpmktYn~ILkGid~i~~Pr~I~k~a~~Lik~LCr~~P~ERLG~~~~g  670 (732)
T KOG0614|consen  592 LNKGHDRAVDYWA-LGILIYELLTGSPPFSGVDPMKTYNLILKGIDKIEFPRRITKTATDLIKKLCRDNPTERLGYQKGG  670 (732)
T ss_pred             hccCcchhhHHHH-HHHHHHHHHcCCCCCCCCchHHHHHHHHhhhhhhhcccccchhHHHHHHHHHhcCcHhhhccccCC
Confidence            8866677779999 9999999999999999876666555555443445555789999999999999988          7


Q ss_pred             HHHHHcCCCCCCCCCC
Q 013230          429 AKEAIFDPFFSDLIVD  444 (447)
Q Consensus       429 a~elL~HPff~~~~~~  444 (447)
                      +.|+.+|.||.++.++
T Consensus       671 I~DIkkH~Wf~gfdwe  686 (732)
T KOG0614|consen  671 INDIKKHRWFEGFDWE  686 (732)
T ss_pred             hHHHHhhhhhhcCChh
Confidence            9999999999988654

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.3e-28  Score=251.49  Aligned_cols=224  Identities=23%  Similarity=0.255  Sum_probs=184.7

Q ss_pred             CcceEEeccccceEEEEec---------e-eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccc
Q 013230          134 PENIVKVGEGTFGEAFLAG---------N-TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACT  203 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~---------~-vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~  203 (447)
                      ..+.++||+|+||+||+|+         . ||+|....+..     .......++++|+++|+.++|        ||   
T Consensus       159 v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~-----~~~~~~~e~m~EArvMr~l~H--------~N---  222 (474)
T KOG0194|consen  159 IELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSE-----LTKEQIKEFMKEARVMRQLNH--------PN---  222 (474)
T ss_pred             ccccceeecccccEEEEEEEEecCCceeeeeEEEeeccccc-----ccHHHHHHHHHHHHHHHhCCC--------CC---
Confidence            4677999999999999996         1 68887664221     234456789999999999999        88   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHH
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQ  278 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Q  278 (447)
                       ||++|++.+.                              +.-+|||||+|.|| +|.++++     ++..+...++.|
T Consensus       223 -VVr~yGVa~~------------------------------~~Pl~ivmEl~~gG-sL~~~L~k~~~~v~~~ek~~~~~~  270 (474)
T KOG0194|consen  223 -VVRFYGVAVL------------------------------EEPLMLVMELCNGG-SLDDYLKKNKKSLPTLEKLRFCYD  270 (474)
T ss_pred             -EEEEEEEEcC------------------------------CCccEEEEEecCCC-cHHHHHHhCCCCCCHHHHHHHHHH
Confidence             9999998543                              56699999999999 9999987     888999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCC
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQ  353 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~  353 (447)
                      .+.||+|||+ +++|||||-..|+|++.++                    .+||+|||+|+.....     .+-.---++
T Consensus       271 AA~Gl~YLh~-k~~IHRDIAARNcL~~~~~--------------------~vKISDFGLs~~~~~~~~~~~~~klPirWL  329 (474)
T KOG0194|consen  271 AARGLEYLHS-KNCIHRDIAARNCLYSKKG--------------------VVKISDFGLSRAGSQYVMKKFLKKLPIRWL  329 (474)
T ss_pred             HHhHHHHHHH-CCCcchhHhHHHheecCCC--------------------eEEeCccccccCCcceeeccccccCcceec
Confidence            9999999999 9999999999999999987                    6899999999876411     111111278


Q ss_pred             CCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc
Q 013230          354 DPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       354 ~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d  427 (447)
                      +||.+....++...|+|+ +|+..++..+ |..|+..........++....-..+.+...+.+...++.+|...|
T Consensus       330 APEtl~~~~~s~kTDV~s-fGV~~~Eif~~g~~Py~g~~~~~v~~kI~~~~~r~~~~~~~p~~~~~~~~~c~~~~  403 (474)
T KOG0194|consen  330 APETLNTGIFSFKTDVWS-FGVLLWEIFENGAEPYPGMKNYEVKAKIVKNGYRMPIPSKTPKELAKVMKQCWKKD  403 (474)
T ss_pred             ChhhhccCccccccchhh-eeeeEEeeeccCCCCCCCCCHHHHHHHHHhcCccCCCCCCCHHHHHHHHHHhccCC
Confidence            999998877888889999 9999998887 567888877777777776555566666778899999999999999

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.96  E-value=9e-29  Score=246.30  Aligned_cols=244  Identities=20%  Similarity=0.231  Sum_probs=185.7

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||.||+|++      +|+|++....      ........+.+|+.+++.++|        +|    |++
T Consensus         2 y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~------~~~~~~~~~~~e~~~l~~l~~--------~~----i~~   63 (330)
T cd07834           2 YELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVF------DDLIDAKRILREIKLLRHLRH--------EN----IIG   63 (330)
T ss_pred             ceeeeeecCCCCeEEEEEEeCCCCcEEEEEeecccc------ccchhhhhHHHHHHHHHhcCC--------cc----hhh
Confidence            58999999999999999973      8999876432      112344678899999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++...+                         ......+|++|||+. + +|.+++.    +++..++.++.||+.||
T Consensus        64 ~~~~~~~~~-------------------------~~~~~~~~lv~e~~~-~-~l~~~l~~~~~l~~~~~~~i~~~l~~~l  116 (330)
T cd07834          64 LLDILRPPS-------------------------PEDFNDVYIVTELME-T-DLHKVIKSPQPLTDDHIQYFLYQILRGL  116 (330)
T ss_pred             hhhhhcccC-------------------------cccccceEEEecchh-h-hHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence            998853311                         011246899999997 4 7888775    89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC--------EEEEecCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED--------IFFLDLSQDP  355 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g--------~i~~~~~~~p  355 (447)
                      +|||+ .||+||||||+|||++.++                    .++|+|||++.......        .+....|++|
T Consensus       117 ~~LH~-~gi~H~dlkp~nili~~~~--------------------~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aP  175 (330)
T cd07834         117 KYLHS-ANVIHRDLKPSNILVNSNC--------------------DLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAP  175 (330)
T ss_pred             HHHHh-CCeecCCCCHHHEEEcCCC--------------------CEEEcccCceEeecccccccccccccccccCcCCc
Confidence            99999 9999999999999999987                    79999999998765432        1233458899


Q ss_pred             CCCCCC-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhcc--------------------------CCC-
Q 013230          356 ELFSGP-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKK--------------------------TFD-  407 (447)
Q Consensus       356 elf~g~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~--------------------------~~~-  407 (447)
                      |.+.+. ......|+|+ +|.+.++++.+..|+...........+.....                          ..+ 
T Consensus       176 E~~~~~~~~~~~sDi~s-lG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (330)
T cd07834         176 ELLLSSSRYTKAIDIWS-VGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKKPL  254 (330)
T ss_pred             eeeecccCCCcchhHHH-HHHHHHHHHcCCCCcCCCCHHHHHHHHHHhcCCCChhHhhhccccchhhHHhhcccCCcchh
Confidence            999886 5566679999 89999999999888754322221111110000                          000 


Q ss_pred             --CCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          408 --RSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       408 --~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                        .....+.++.+||.+||.++     |++++++||||+++..+
T Consensus       255 ~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~~  298 (330)
T cd07834         255 SKLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQLHDP  298 (330)
T ss_pred             HHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhhccc
Confidence              01236789999999999999     99999999999876543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.2e-28  Score=234.48  Aligned_cols=227  Identities=22%  Similarity=0.247  Sum_probs=182.1

Q ss_pred             eccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEEE
Q 013230          140 VGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKV  213 (447)
Q Consensus       140 LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~~  213 (447)
                      ||+|+||.||+|..      +|+|++.....     ........+..|+.+++.++|        +|    |+++++.+.
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~-----~~~~~~~~~~~e~~~l~~l~h--------~~----i~~~~~~~~   63 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKI-----IKRKEVEHTLTERNILSRINH--------PF----IVKLHYAFQ   63 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhh-----cchHHHHHHHHHHHHHHHcCC--------Cc----HHHHHHHee
Confidence            69999999999873      89998875422     122244678899999999998        88    899887743


Q ss_pred             EeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHHHHh
Q 013230          214 CQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVAEAA  289 (447)
Q Consensus       214 ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~ylH~~  289 (447)
                                                    .++..|++|||+.+| +|.+++.    +++..+..++.|++.||.|||+ 
T Consensus        64 ------------------------------~~~~~~~v~e~~~~~-~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lh~-  111 (250)
T cd05123          64 ------------------------------TEEKLYLVLEYAPGG-ELFSHLSKEGRFSEERARFYAAEIVLALEYLHS-  111 (250)
T ss_pred             ------------------------------cCCeeEEEEecCCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence                                          256799999999877 9998876    7999999999999999999999 


Q ss_pred             CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCCCCCCCCC
Q 013230          290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPELFSGPKGD  364 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pelf~g~~~~  364 (447)
                      .+++|+||||+||+++.++                    .++|+|||++......     .......|++||.+.+....
T Consensus       112 ~~~~H~~l~p~ni~~~~~~--------------------~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~  171 (250)
T cd05123         112 LGIIYRDLKPENILLDADG--------------------HIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLLGKGYG  171 (250)
T ss_pred             CCceecCCCcceEEEcCCC--------------------cEEEeecCcceecccCCCcccCCcCCccccChHHhCCCCCC
Confidence            9999999999999999987                    7999999999775442     12223347899998886666


Q ss_pred             chHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CH---HHHHcCC
Q 013230          365 KQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SA---KEAIFDP  436 (447)
Q Consensus       365 ~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa---~elL~HP  436 (447)
                      .+.|+|+ +|.+.++++.+..|+..............  ..++.+...+.++++|+++||..|     |+   +++++||
T Consensus       172 ~~~D~~s-lG~~~~~l~~g~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~i~~~l~~~p~~R~~~~~~~~l~~~~  248 (250)
T cd05123         172 KAVDWWS-LGVLLYEMLTGKPPFYAEDRKEIYEKILK--DPLRFPEFLSPEARDLISGLLQKDPTKRLGSGGAEEIKAHP  248 (250)
T ss_pred             chhhHHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHhc--CCCCCCCCCCHHHHHHHHHHhcCCHhhCCCcccHHHHHhCC
Confidence            7789999 89999999999999865433232223221  344555667899999999999998     77   9999999


Q ss_pred             CC
Q 013230          437 FF  438 (447)
Q Consensus       437 ff  438 (447)
                      ||
T Consensus       249 ~f  250 (250)
T cd05123         249 FF  250 (250)
T ss_pred             CC
Confidence            98

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.96  E-value=4.1e-29  Score=253.85  Aligned_cols=222  Identities=18%  Similarity=0.187  Sum_probs=175.8

Q ss_pred             CcceEEeccccceEEEEec---eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeee
Q 013230          134 PENIVKVGEGTFGEAFLAG---NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~---~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      ..+.+.||+|.||+||+|+   +||||++..+..      .+...+.+.+|+.++++-+|        .|    |+-+.+
T Consensus       394 v~l~~rIGsGsFGtV~Rg~whGdVAVK~Lnv~~p------t~~qlqaFKnEVa~lkkTRH--------~N----IlLFMG  455 (678)
T KOG0193|consen  394 VLLGERIGSGSFGTVYRGRWHGDVAVKLLNVDDP------TPEQLQAFKNEVAVLKKTRH--------EN----ILLFMG  455 (678)
T ss_pred             hhccceeccccccceeecccccceEEEEEecCCC------CHHHHHHHHHHHHHHhhcch--------hh----heeeeh
Confidence            4888999999999999998   699999987653      44477899999999999998        88    999998


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHHHHH
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAGLAV  285 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~gL~y  285 (447)
                      ++.                               +..+.||..+|. |.+|+.++.     |.....+.|++||++|+.|
T Consensus       456 ~~~-------------------------------~p~~AIiTqwCe-GsSLY~hlHv~etkfdm~~~idIAqQiaqGM~Y  503 (678)
T KOG0193|consen  456 ACM-------------------------------NPPLAIITQWCE-GSSLYTHLHVQETKFDMNTTIDIAQQIAQGMDY  503 (678)
T ss_pred             hhc-------------------------------CCceeeeehhcc-CchhhhhccchhhhhhHHHHHHHHHHHHHhhhh
Confidence            843                               334589999998 569999987     8999999999999999999


Q ss_pred             HHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----C---EEEEecCCCCCCC
Q 013230          286 AEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----D---IFFLDLSQDPELF  358 (447)
Q Consensus       286 lH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g---~i~~~~~~~pelf  358 (447)
                      ||. ++|||||||..||++..+.                    .|||+|||++...+.-    +   -..+-+|||||+.
T Consensus       504 LHA-K~IIHrDLKSnNIFl~~~~--------------------kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEvI  562 (678)
T KOG0193|consen  504 LHA-KNIIHRDLKSNNIFLHEDL--------------------KVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVI  562 (678)
T ss_pred             hhh-hhhhhhhccccceEEccCC--------------------cEEEecccceeeeeeeccccccCCCccchhhhcHHHH
Confidence            999 9999999999999999987                    7999999999654321    1   1344568999988


Q ss_pred             C---CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh---ccCCCCCccchHHHHHHHHHhcccc
Q 013230          359 S---GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL---KKTFDRSSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       359 ~---g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~---~~~~~~~~~~s~~l~dLl~~mL~~d  427 (447)
                      .   ...+..+.|+|+ +|++.|++.+|.+|+......+.+..+-.+   ............++++|+..|+.++
T Consensus       563 Rmqd~nPfS~qSDVYa-FGiV~YELltg~lPysi~~~dqIifmVGrG~l~pd~s~~~s~~pk~mk~Ll~~C~~~~  636 (678)
T KOG0193|consen  563 RMQDDNPFSFQSDVYA-FGIVWYELLTGELPYSIQNRDQIIFMVGRGYLMPDLSKIRSNCPKAMKRLLSDCWKFD  636 (678)
T ss_pred             hhcccCCCCcccchhh-hhHHHHHHHhCcCCcCCCChhheEEEecccccCccchhhhccCHHHHHHHHHHHHhcC
Confidence            3   334556779999 999999999999999754322222111111   1111223456679999999999999

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.96  E-value=2.3e-28  Score=237.36  Aligned_cols=232  Identities=19%  Similarity=0.235  Sum_probs=178.5

Q ss_pred             CcceEEeccccceEEEEece-----------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          134 PENIVKVGEGTFGEAFLAGN-----------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~-----------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      |++.+.||+|+||.||+|..           ||+|.+....       .......+.+|+.+++.++|        +|  
T Consensus         8 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~-------~~~~~~~~~~e~~~l~~l~~--------~~--   70 (277)
T cd05036           8 ITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESC-------SEQDESDFLMEALIMSKFNH--------QN--   70 (277)
T ss_pred             cEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCC-------CHHHHHHHHHHHHHHHhCCC--------CC--
Confidence            48899999999999999863           6777665321       12223568899999999988        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----------CCHHH
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----------LNINE  271 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----------l~~~~  271 (447)
                        |+++++++..                              .+..|+||||+.|| +|.+++.           +++..
T Consensus        71 --i~~~~~~~~~------------------------------~~~~~lv~e~~~g~-~L~~~i~~~~~~~~~~~~~~~~~  117 (277)
T cd05036          71 --IVRLIGVSFE------------------------------RLPRFILLELMAGG-DLKSFLRENRPRPERPSSLTMKD  117 (277)
T ss_pred             --EeeEEEEEcc------------------------------CCCcEEEEecCCCC-CHHHHHHHhCCCCCCCCCCCHHH
Confidence              9999998532                              45689999999988 9998863           78889


Q ss_pred             HHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------
Q 013230          272 ARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------  345 (447)
Q Consensus       272 ~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------  345 (447)
                      +..++.||+.||+|||+ .+++||||||+|||++.++.                 +..+||+|||+++......      
T Consensus       118 ~~~~~~qi~~~l~~LH~-~~ivH~dlkp~nil~~~~~~-----------------~~~~kl~dfg~~~~~~~~~~~~~~~  179 (277)
T cd05036         118 LLFCARDVAKGCKYLEE-NHFIHRDIAARNCLLTCKGP-----------------GRVAKIADFGMARDIYRASYYRKGG  179 (277)
T ss_pred             HHHHHHHHHHHHHHHHH-CCEeecccchheEEEeccCC-----------------CcceEeccCccccccCCccceecCC
Confidence            99999999999999999 99999999999999987641                 1258999999998653221      


Q ss_pred             EEE-EecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHh
Q 013230          346 IFF-LDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRL  423 (447)
Q Consensus       346 ~i~-~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~m  423 (447)
                      ... ...|++||.+.+...+...|||+ +|++.+++++ +..|+......... +.+........+...+..+.+|+.+|
T Consensus       180 ~~~~~~~y~aPE~~~~~~~~~~~Diws-lG~il~el~~~g~~pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~c  257 (277)
T cd05036         180 RAMLPIKWMPPEAFLDGIFTSKTDVWS-FGVLLWEIFSLGYMPYPGRTNQEVM-EFVTGGGRLDPPKGCPGPVYRIMTDC  257 (277)
T ss_pred             CCCccHhhCCHHHHhcCCcCchhHHHH-HHHHHHHHHcCCCCCCCCCCHHHHH-HHHHcCCcCCCCCCCCHHHHHHHHHH
Confidence            111 12378999998777778889999 8999999886 77887654333322 22222223333456789999999999


Q ss_pred             cccc-----CHHHHHcC
Q 013230          424 DKYN-----SAKEAIFD  435 (447)
Q Consensus       424 L~~d-----sa~elL~H  435 (447)
                      |+.+     |+.++++|
T Consensus       258 l~~~p~~Rps~~~vl~~  274 (277)
T cd05036         258 WQHTPEDRPNFATILER  274 (277)
T ss_pred             cCCCcccCcCHHHHHHH
Confidence            9998     99999986

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.96  E-value=1.8e-28  Score=238.65  Aligned_cols=231  Identities=19%  Similarity=0.152  Sum_probs=175.4

Q ss_pred             CcceEEeccccceEEEEec----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccc
Q 013230          134 PENIVKVGEGTFGEAFLAG----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACT  203 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~  203 (447)
                      |++++.||+|+||+||++.          .||+|.+....       .......+.+|+.+++.++|        ||   
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------~~---   67 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKREC-------GQQNTSGWKKEINILKTLYH--------EN---   67 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEecccc-------ChHHHHHHHHHHHHHHhCCC--------CC---
Confidence            4889999999999998753          38999876431       12234567899999999998        88   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHH
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVT  280 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil  280 (447)
                       |+++++++...                            ....+|++|||+.+| +|.+++.   +++.+++.++.|++
T Consensus        68 -i~~~~~~~~~~----------------------------~~~~~~lv~e~~~~~-~l~~~~~~~~l~~~~~~~i~~~l~  117 (283)
T cd05080          68 -IVKYKGCCSEQ----------------------------GGKGLQLIMEYVPLG-SLRDYLPKHKLNLAQLLLFAQQIC  117 (283)
T ss_pred             -EeeEEEEEecC----------------------------CCceEEEEecCCCCC-CHHHHHHHcCCCHHHHHHHHHHHH
Confidence             99999875421                            134589999999988 9998876   89999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE--------EEEecC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI--------FFLDLS  352 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~--------i~~~~~  352 (447)
                      .||+|||+ +||+||||||+|||++.++                    .+||+|||+++.......        .....|
T Consensus       118 ~~l~~lH~-~~i~H~dlkp~Nili~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~  176 (283)
T cd05080         118 EGMAYLHS-QHYIHRDLAARNVLLDNDR--------------------LVKIGDFGLAKAVPEGHEYYRVREDGDSPVFW  176 (283)
T ss_pred             HHHHHHHH-CCeeccccChheEEEcCCC--------------------cEEEeecccccccCCcchhhccCCCCCCCcee
Confidence            99999999 9999999999999999887                    799999999986543211        011226


Q ss_pred             CCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhH--HHH------------HHHHHHhhccCCCCCccchHHHHH
Q 013230          353 QDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVL--WLV------------YLVDMLLLKKTFDRSSKDERDLRS  418 (447)
Q Consensus       353 ~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~--~~~------------~~~~~l~~~~~~~~~~~~s~~l~d  418 (447)
                      ++||.+.+...+.+.|+|+ +|.+.++++++..|+....  +..            .+.+.+......+.+...+.++++
T Consensus       177 ~~PE~~~~~~~~~~~Di~s-lG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (283)
T cd05080         177 YAVECLKENKFSYASDVWS-FGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLERGMRLPCPKNCPQEVYI  255 (283)
T ss_pred             eCHhHhcccCCCcccccHH-HHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhhcCCCCCCCCCCCHHHHH
Confidence            7888887766677779999 9999999999987764321  000            011111111223334567889999


Q ss_pred             HHHHhcccc-----CHHHHHc
Q 013230          419 LKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       419 Ll~~mL~~d-----sa~elL~  434 (447)
                      ++.+||..|     |++++++
T Consensus       256 li~~cl~~~p~~Rps~~~i~~  276 (283)
T cd05080         256 LMKNCWETEAKFRPTFRSLIP  276 (283)
T ss_pred             HHHHHhccChhhCCCHHHHHH
Confidence            999999998     8888874

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.96  E-value=1.4e-28  Score=236.13  Aligned_cols=235  Identities=20%  Similarity=0.216  Sum_probs=177.6

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |.+.++||+|+||.||+|++      +++|++..-..   ..........+..|+.+++.++|        ||    |++
T Consensus         2 y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~e~~~l~~l~h--------~~----i~~   66 (260)
T cd08222           2 YILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPV---GELNPNETVQANQEAQLLSKLDH--------PA----IVK   66 (260)
T ss_pred             ceeeeeecCCCCceEEEEEecCCCCcceEEEeccccc---cccCcchHHHHHHHHHHHHhCCC--------Cc----HHH
Confidence            58899999999999999874      44554432111   01122233456789999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQV  279 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Qi  279 (447)
                      +++++.                              .....++||||+.+| +|..++.        +++..++.++.|+
T Consensus        67 ~~~~~~------------------------------~~~~~~lv~e~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~l  115 (260)
T cd08222          67 FHASFL------------------------------ERDAFCIITEYCEGR-DLDCKLEELKHTGKTLSENQVCEWFIQL  115 (260)
T ss_pred             HHHHHh------------------------------cCCceEEEEEeCCCC-CHHHHHHHHhhcccccCHHHHHHHHHHH
Confidence            988742                              245689999999987 8887653        8899999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE-----EEecCCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF-----FLDLSQD  354 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i-----~~~~~~~  354 (447)
                      +.||+|||+ .|++|+||||+||+++.+                     .+||+|||+++........     ....|++
T Consensus       116 ~~~l~~lH~-~~i~h~~l~~~nili~~~---------------------~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~  173 (260)
T cd08222         116 LLGVHYMHQ-RRILHRDLKAKNIFLKNN---------------------LLKIGDFGVSRLLMGSCDLATTFTGTPYYMS  173 (260)
T ss_pred             HHHHHHHHH-cCccccCCChhheEeecC---------------------CEeecccCceeecCCCcccccCCCCCcCccC
Confidence            999999999 999999999999999764                     5999999999876443221     1123678


Q ss_pred             CCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CH
Q 013230          355 PELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SA  429 (447)
Q Consensus       355 pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa  429 (447)
                      ||.+.+...+.+.|+|+ +|.+.++++.+..|+.............. ......+...+.++.+||.+||..|     ++
T Consensus       174 pe~~~~~~~~~~~Dv~s-lG~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~  251 (260)
T cd08222         174 PEALKHQGYDSKSDIWS-LGCILYEMCCLAHAFEGQNFLSVVLRIVE-GPTPSLPETYSRQLNSIMQSMLNKDPSLRPSA  251 (260)
T ss_pred             HHHHccCCCCchhhHHH-HHHHHHHHHhCCCCCCCccHHHHHHHHHc-CCCCCCcchhcHHHHHHHHHHhcCChhhCcCH
Confidence            88887766666789999 89999999998888764433333333221 1122223567889999999999998     99


Q ss_pred             HHHHcCCCC
Q 013230          430 KEAIFDPFF  438 (447)
Q Consensus       430 ~elL~HPff  438 (447)
                      .|+++||||
T Consensus       252 ~~il~~~~~  260 (260)
T cd08222         252 AEILRNPFI  260 (260)
T ss_pred             HHHhhCCCC
Confidence            999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.96  E-value=1.3e-28  Score=269.20  Aligned_cols=225  Identities=20%  Similarity=0.193  Sum_probs=174.5

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+++++||+|+||.||+|++      ||+|++.....     ......+++.+|+.+++.++|        ||    |+
T Consensus         3 rYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~-----~~e~~~~rflrEi~ILs~L~H--------PN----IV   65 (932)
T PRK13184          3 RYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLS-----ENPLLKKRFLREAKIAADLIH--------PG----IV   65 (932)
T ss_pred             CeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccc-----cCHHHHHHHHHHHHHHHhCCC--------cC----cC
Confidence            459999999999999999963      89998874321     222344678999999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------------CCHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------------LNINE  271 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------------l~~~~  271 (447)
                      ++++++..                              .+..|+||||+.|| +|.+++.               ++...
T Consensus        66 kl~~v~~d------------------------------~~~lyLVMEY~eGG-SL~~lL~s~~~~~~l~e~~~~~lsv~~  114 (932)
T PRK13184         66 PVYSICSD------------------------------GDPVYYTMPYIEGY-TLKSLLKSVWQKESLSKELAEKTSVGA  114 (932)
T ss_pred             eEEEEEee------------------------------CCEEEEEEEcCCCC-CHHHHHHHhhhccccchhhhcccCHHH
Confidence            99988543                              46689999999988 9988763               34456


Q ss_pred             HHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-------
Q 013230          272 ARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-------  344 (447)
Q Consensus       272 ~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-------  344 (447)
                      +..++.||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+|+.....       
T Consensus       115 iL~I~~QIa~AL~yLHs-~GIIHRDLKPeNILLd~dg--------------------~vKLiDFGLAk~i~~~~~~~~~l  173 (932)
T PRK13184        115 FLSIFHKICATIEYVHS-KGVLHRDLKPDNILLGLFG--------------------EVVILDWGAAIFKKLEEEDLLDI  173 (932)
T ss_pred             HHHHHHHHHHHHHHHHH-CCccccCCchheEEEcCCC--------------------CEEEEecCcceeccccccccccc
Confidence            78899999999999999 9999999999999999987                    7999999999865211       


Q ss_pred             ---------------C-EEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHH-HHHhhccCCC
Q 013230          345 ---------------D-IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLV-DMLLLKKTFD  407 (447)
Q Consensus       345 ---------------g-~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~-~~l~~~~~~~  407 (447)
                                     + .+....|++||.+.+...+.+.|+|+ +|++.+++.+|..|+.......... ..+.......
T Consensus       174 ~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWS-LGVILyELLTG~~PF~~~~~~ki~~~~~i~~P~~~~  252 (932)
T PRK13184        174 DVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYA-LGVILYQMLTLSFPYRRKKGRKISYRDVILSPIEVA  252 (932)
T ss_pred             ccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHH-HHHHHHHHHHCCCCCCCcchhhhhhhhhccChhhcc
Confidence                           0 12334589999998887888889999 9999999999999986532221111 1111111222


Q ss_pred             CCccchHHHHHHHHHhcccc
Q 013230          408 RSSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       408 ~~~~~s~~l~dLl~~mL~~d  427 (447)
                      ....+++.+.+++.+||..|
T Consensus       253 p~~~iP~~L~~LI~rcL~~D  272 (932)
T PRK13184        253 PYREIPPFLSQIAMKALAVD  272 (932)
T ss_pred             ccccCCHHHHHHHHHHccCC
Confidence            23457889999999999999

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.96  E-value=2.6e-28  Score=237.22  Aligned_cols=233  Identities=24%  Similarity=0.344  Sum_probs=178.8

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+++++||.|++|.||+|.+      ||+|++....      ........+.+|+.+++.++|        +|    +++
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~------~~~~~~~~~~~E~~~l~~l~~--------~~----iv~   62 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLET------EDEGVPSTAIREISLLKELNH--------PN----IVR   62 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeeccc------ccccchhHHHHHHHHHHhcCC--------CC----ccC
Confidence            57889999999999999973      8999887542      122334567889999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +++++.                              ..+..|++|||+. + +|.+++.      +++..+..++.|++.
T Consensus        63 ~~~~~~------------------------------~~~~~~iv~e~~~-~-~l~~~~~~~~~~~~~~~~~~~~~~~i~~  110 (283)
T cd07835          63 LLDVVH------------------------------SENKLYLVFEFLD-L-DLKKYMDSSPLTGLDPPLIKSYLYQLLQ  110 (283)
T ss_pred             Hhheec------------------------------cCCeEEEEEeccC-c-CHHHHHhhCCCCCCCHHHHHHHHHHHHH
Confidence            998843                              2567999999995 5 7888764      789999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pe  356 (447)
                      ||+|||+ .+++||||+|+||+++.++                    .++|+|||+++.....     .......|++||
T Consensus       111 ~L~~lH~-~~~~H~dl~p~nil~~~~~--------------------~~~l~df~~~~~~~~~~~~~~~~~~~~~~~aPE  169 (283)
T cd07835         111 GIAYCHS-HRVLHRDLKPQNLLIDREG--------------------ALKLADFGLARAFGVPVRTYTHEVVTLWYRAPE  169 (283)
T ss_pred             HHHHHHH-CCeeCCCCCHHHEEEcCCC--------------------cEEEeecccccccCCCccccCccccccCCCCCc
Confidence            9999999 9999999999999999976                    7999999999764322     112234588999


Q ss_pred             CCCCCC-CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh------------------ccCCC---------C
Q 013230          357 LFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL------------------KKTFD---------R  408 (447)
Q Consensus       357 lf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~------------------~~~~~---------~  408 (447)
                      .+.+.. ...+.|+|+ +|.+.+++++|..|+........+.+....                  ...++         .
T Consensus       170 ~~~~~~~~~~~~Di~s-lG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (283)
T cd07835         170 ILLGSRQYSTPVDIWS-IGCIFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQDLSKV  248 (283)
T ss_pred             eeecCcccCcHHHHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhhhhhchhhhhhcccccccchhhh
Confidence            886643 355679999 899999999998887533221111111000                  00010         1


Q ss_pred             CccchHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          409 SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       409 ~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                      ....+.++.+||.+||+.|     |++|++.||||
T Consensus       249 ~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~~~~  283 (283)
T cd07835         249 VPNLDEDGLDLLSKMLVYDPAKRISAKAALQHPYF  283 (283)
T ss_pred             cCCCCHHHHHHHHHHhcCChhhCcCHHHHhcCCCC
Confidence            2346789999999999999     99999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.96  E-value=2.6e-29  Score=257.43  Aligned_cols=229  Identities=17%  Similarity=0.176  Sum_probs=181.4

Q ss_pred             CCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccce
Q 013230          132 SDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~i  205 (447)
                      ..|+....+|.|+||.|..|.+      .++|++....            ....+|+.++....+  |     ||    |
T Consensus       322 ~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~------------~~~~~e~~~~~~~~~--h-----~n----i  378 (612)
T KOG0603|consen  322 ESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRA------------DDNQDEIPISLLVRD--H-----PN----I  378 (612)
T ss_pred             hhhccccccCCCCccceeeeeccccccchhheeccccc------------cccccccchhhhhcC--C-----Cc----c
Confidence            3458888999999999999974      7889887441            123567766665543  1     55    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--CCHHHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--LNINEARSLLVQVTAGL  283 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--l~~~~~~~i~~Qil~gL  283 (447)
                      +++.+.+.                              ...+.|+|||++.||..|.....  ....++..+++||+.|+
T Consensus       379 v~~~~v~~------------------------------~~~~~~~v~e~l~g~ell~ri~~~~~~~~e~~~w~~~lv~Av  428 (612)
T KOG0603|consen  379 VKSHDVYE------------------------------DGKEIYLVMELLDGGELLRRIRSKPEFCSEASQWAAELVSAV  428 (612)
T ss_pred             eeecceec------------------------------CCceeeeeehhccccHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence            99999943                              25679999999999977777665  23368888999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEe-cCCCccccccccCcccccccCCCcEEEeeccceeecCCC--CEEEEecCCCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLS-RNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--DIFFLDLSQDPELFSG  360 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~-~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--g~i~~~~~~~pelf~g  360 (447)
                      .|||+ +|||||||||+|||++ ..+                    +++|+|||.++.....  .-.+...|.+||+...
T Consensus       429 ~~LH~-~gvvhRDLkp~NIL~~~~~g--------------------~lrltyFG~a~~~~~~~~tp~~t~~y~APEvl~~  487 (612)
T KOG0603|consen  429 DYLHE-QGVVHRDLKPGNILLDGSAG--------------------HLRLTYFGFWSELERSCDTPALTLQYVAPEVLAI  487 (612)
T ss_pred             HHHHh-cCeeecCCChhheeecCCCC--------------------cEEEEEechhhhCchhhcccchhhcccChhhhcc
Confidence            99999 9999999999999995 555                    7999999999988776  3235667899999999


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHcC
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      ..++..+|||+ +|.+.++|+.|..|+.+.--...+...+   ...+....+|.+++|||++||+.|     ++++++.|
T Consensus       488 ~~yt~acD~WS-LGvlLy~ML~G~tp~~~~P~~~ei~~~i---~~~~~s~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~h  563 (612)
T KOG0603|consen  488 QEYTEACDWWS-LGVLLYEMLTGRTLFAAHPAGIEIHTRI---QMPKFSECVSDEAKDLLQQLLQVDPALRLGADEIGAH  563 (612)
T ss_pred             CCCCcchhhHH-HHHHHHHHHhCCCccccCCchHHHHHhh---cCCccccccCHHHHHHHHHhccCChhhCcChhhhccC
Confidence            88899999999 9999999999998886542221122222   111122679999999999999999     99999999


Q ss_pred             CCC
Q 013230          436 PFF  438 (447)
Q Consensus       436 Pff  438 (447)
                      |||
T Consensus       564 ~w~  566 (612)
T KOG0603|consen  564 PWF  566 (612)
T ss_pred             cch
Confidence            999

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.96  E-value=3.2e-28  Score=233.86  Aligned_cols=224  Identities=22%  Similarity=0.253  Sum_probs=177.6

Q ss_pred             CcceEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          134 PENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      |+++++||+|+||.||+|.     .+|+|.+.....         ..+.+.+|+.++++++|        +|    |+++
T Consensus         8 ~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~---------~~~~~~~E~~~l~~l~~--------~~----i~~~   66 (260)
T cd05070           8 LQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM---------SPESFLEEAQIMKKLRH--------DK----LVQL   66 (260)
T ss_pred             hhhhheeccccCceEEEEEecCCceeEEEEecCCCC---------CHHHHHHHHHHHHhcCC--------Cc----eEEE
Confidence            4899999999999999997     388898764321         23568899999999998        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAG  282 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~g  282 (447)
                      ++++.                               ....|++|||+.+| +|.+++.      +++..++.++.|++.|
T Consensus        67 ~~~~~-------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~l~~a  114 (260)
T cd05070          67 YAVVS-------------------------------EEPIYIVTEYMSKG-SLLDFLKDGEGRALKLPNLVDMAAQVAAG  114 (260)
T ss_pred             EeEEC-------------------------------CCCcEEEEEecCCC-cHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            88731                               34579999999988 9998874      7889999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE------EEEecCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI------FFLDLSQDPE  356 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~------i~~~~~~~pe  356 (447)
                      |+|||+ .||+||||||+||+++.++                    .++|+|||+++.......      .....|++||
T Consensus       115 l~~lH~-~~i~H~di~p~Nili~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE  173 (260)
T cd05070         115 MAYIER-MNYIHRDLRSANILVGDGL--------------------VCKIADFGLARLIEDNEYTARQGAKFPIKWTAPE  173 (260)
T ss_pred             HHHHHH-CCcccCCCccceEEEeCCc--------------------eEEeCCceeeeeccCcccccccCCCCCccccChH
Confidence            999999 9999999999999999887                    799999999987544321      1112388999


Q ss_pred             CCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      .+.+...+.+.|+|+ +|.+.+++++ +..|+............. .....+.+...+..+++|+.+||..|     |++
T Consensus       174 ~~~~~~~~~~~Di~s-lG~~l~~l~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~  251 (260)
T cd05070         174 AALYGRFTIKSDVWS-FGILLTELVTKGRVPYPGMNNREVLEQVE-RGYRMPCPQDCPISLHELMLQCWKKDPEERPTFE  251 (260)
T ss_pred             HHhcCCCcchhhhHH-HHHHHHHHHhcCCCCCCCCCHHHHHHHHH-cCCCCCCCCcCCHHHHHHHHHHcccCcccCcCHH
Confidence            887767777789999 8999999998 777876543333333222 22234445667899999999999998     888


Q ss_pred             HHH
Q 013230          431 EAI  433 (447)
Q Consensus       431 elL  433 (447)
                      +++
T Consensus       252 ~l~  254 (260)
T cd05070         252 YLQ  254 (260)
T ss_pred             HHH
Confidence            875

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.96  E-value=2.2e-28  Score=239.28  Aligned_cols=230  Identities=20%  Similarity=0.233  Sum_probs=175.9

Q ss_pred             CCcceEEeccccceEEEEece----------------------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN----------------------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNH  190 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~----------------------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h  190 (447)
                      +|+++++||+|+||.||+|.+                      +|+|.+....       .....+.+.+|+.++++++|
T Consensus         6 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~-------~~~~~~~~~~e~~~l~~l~~   78 (296)
T cd05051           6 PLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDA-------SDNAREDFLKEVKILSRLSD   78 (296)
T ss_pred             hCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCcc-------CHHHHHHHHHHHHHHHhcCC
Confidence            459999999999999999762                      6888776432       12344678899999999998


Q ss_pred             cccCCCCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----
Q 013230          191 LRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----  266 (447)
Q Consensus       191 ~~~~~~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----  266 (447)
                              ||    |+++++++..                              ++..+++|||+.+| +|.+++.    
T Consensus        79 --------~~----i~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~  115 (296)
T cd05051          79 --------PN----IARLLGVCTV------------------------------DPPLCMIMEYMENG-DLNQFLQKHVA  115 (296)
T ss_pred             --------CC----EeEEEEEEec------------------------------CCCcEEEEecCCCC-CHHHHHHhccc
Confidence                    88    9999998543                              45689999999987 9988863    


Q ss_pred             -----------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeec
Q 013230          267 -----------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDF  335 (447)
Q Consensus       267 -----------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DF  335 (447)
                                 +++..++.++.|++.||+|||+ .||+||||||+|||++.++                    .++|+||
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~-~~i~H~dlkp~Nili~~~~--------------------~~~l~df  174 (296)
T cd05051         116 ETSGLACNSKSLSFSTLLYMATQIASGMRYLES-LNFVHRDLATRNCLVGKNY--------------------TIKIADF  174 (296)
T ss_pred             ccccccccCCCCCHHHHHHHHHHHHHHHHHHHH-cCccccccchhceeecCCC--------------------ceEEccc
Confidence                       6788999999999999999999 9999999999999999987                    7999999


Q ss_pred             cceeecCCCCE-------EEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc--CCCCCChhHHHHHHHHHHh-----
Q 013230          336 TLSRINTGEDI-------FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE--GSFPKTNVLWLVYLVDMLL-----  401 (447)
Q Consensus       336 Gla~~~~~~g~-------i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~--~~~p~~~~~~~~~~~~~l~-----  401 (447)
                      |+++.......       .....|++||.+.+.....+.|+|+ +|.+.++++.  +..|+........+.....     
T Consensus       175 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s-lG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~  253 (296)
T cd05051         175 GMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWA-FGVTLWEILTLCREQPYEHLTDQQVIENAGHFFRDD  253 (296)
T ss_pred             cceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhh-hHHHHHHHHhcCCCCCCCCcChHHHHHHHHhccccc
Confidence            99986533211       1112378999888767777789999 9999998876  4566654322222221111     


Q ss_pred             -hccCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          402 -LKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       402 -~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                       .....+.+...+.++.+|+.+||+.|     |+.|+++
T Consensus       254 ~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~  292 (296)
T cd05051         254 GRQIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREIHL  292 (296)
T ss_pred             cccccCCCccCCCHHHHHHHHHHhccChhcCCCHHHHHH
Confidence             01122334456789999999999999     9999864

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.96  E-value=2.1e-28  Score=251.05  Aligned_cols=229  Identities=18%  Similarity=0.208  Sum_probs=176.1

Q ss_pred             cceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhcc-ccccCCCCCCCcc
Q 013230          135 ENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN-HLRRNEGDTLNAC  202 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~n~~  202 (447)
                      .+.++||+|+||.||+|+           .||+|++....       .....+.+.+|+.+|.++. |        ||  
T Consensus        40 ~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~-------~~~~~~~~~~E~~~l~~l~~H--------~n--  102 (401)
T cd05107          40 VLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTA-------RSSEKQALMSELKIMSHLGPH--------LN--  102 (401)
T ss_pred             ehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCC-------ChhHHHHHHHHHHHHHhcCCC--------CC--
Confidence            888999999999999996           38999886432       1222356889999999997 6        77  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----------------
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----------------  266 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----------------  266 (447)
                        ||++++++..                              .+.+|+|||||.+| +|.+++.                
T Consensus       103 --iv~~~~~~~~------------------------------~~~~~iv~E~~~~g-~L~~~l~~~~~~~~~~~~~~~~~  149 (401)
T cd05107         103 --IVNLLGACTK------------------------------GGPIYIITEYCRYG-DLVDYLHRNKHTFLQYYLDKNRD  149 (401)
T ss_pred             --eEEEEEEEcc------------------------------CCCcEEEEeccCCC-cHHHHHHhccccchhhhcccccc
Confidence              9999998543                              45689999999998 9988763                


Q ss_pred             --------------------------------------------------------------------------------
Q 013230          267 --------------------------------------------------------------------------------  266 (447)
Q Consensus       267 --------------------------------------------------------------------------------  266 (447)
                                                                                                      
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (401)
T cd05107         150 DGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTL  229 (401)
T ss_pred             cccccccccccccccccchhhhhccCccccccCCccccCccchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhh
Confidence                                                                                            


Q ss_pred             ------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceee
Q 013230          267 ------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRI  340 (447)
Q Consensus       267 ------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~  340 (447)
                            +++..++.++.||+.||+|||+ .+|+||||||+|||++.++                    .+||+|||+++.
T Consensus       230 ~~~~~~l~~~~~~~~~~qi~~aL~~LH~-~~ivHrdlkp~NiLl~~~~--------------------~~kL~DfGla~~  288 (401)
T cd05107         230 INESPALSYMDLVGFSYQVANGMEFLAS-KNCVHRDLAARNVLICEGK--------------------LVKICDFGLARD  288 (401)
T ss_pred             hcCCCCCCHHHHHHHHHHHHHHHHHHhc-CCcCcccCCcceEEEeCCC--------------------EEEEEecCccee
Confidence                  3456678899999999999999 9999999999999999876                    799999999986


Q ss_pred             cCCC------CE-EEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccc
Q 013230          341 NTGE------DI-FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKD  412 (447)
Q Consensus       341 ~~~~------g~-i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~  412 (447)
                      ....      +. .....|++||.+.+.....+.|+|+ +|.+.++++. +..|+............+......+.+...
T Consensus       289 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dvws-lGvil~e~l~~g~~P~~~~~~~~~~~~~~~~~~~~~~p~~~  367 (401)
T cd05107         289 IMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWS-FGILLWEIFTLGGTPYPELPMNEQFYNAIKRGYRMAKPAHA  367 (401)
T ss_pred             cccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHH-HHHHHHHHHHcCCCCCCCCCchHHHHHHHHcCCCCCCCCCC
Confidence            4321      11 1223478999887766777789999 8999999887 667765432222223333222334445567


Q ss_pred             hHHHHHHHHHhcccc-----CHHHHHcC
Q 013230          413 ERDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       413 s~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      +.++.+|+++|+..+     +++|+++.
T Consensus       368 ~~~l~~li~~cl~~~P~~RPs~~ell~~  395 (401)
T cd05107         368 SDEIYEIMQKCWEEKFEIRPDFSQLVHL  395 (401)
T ss_pred             CHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            899999999999998     88888753

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.96  E-value=4.9e-28  Score=229.20  Aligned_cols=232  Identities=22%  Similarity=0.330  Sum_probs=185.4

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+..+.||+|+||.||+|.+      +++|++.....        .....+.+|+.+++.++|        +|    ++
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--------~~~~~~~~e~~~l~~l~~--------~~----i~   60 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESK--------EKKEKIINEIQILKKCKH--------PN----IV   60 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccch--------hHHHHHHHHHHHHHhCCC--------CC----Ee
Confidence            468899999999999999973      88998864321        244678999999999988        77    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      ++++++..                              ++..+++|||+.++ +|.+++.     +++..+..++.|++.
T Consensus        61 ~~~~~~~~------------------------------~~~~~l~~e~~~~~-~L~~~~~~~~~~~~~~~~~~i~~~i~~  109 (253)
T cd05122          61 KYYGSYLK------------------------------KDELWIVMEFCSGG-SLKDLLKSTNQTLTESQIAYVCKELLK  109 (253)
T ss_pred             EEEEEEec------------------------------CCeEEEEEecCCCC-cHHHHHhhcCCCCCHHHHHHHHHHHHH
Confidence            99998644                              46699999999877 9998875     799999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPEL  357 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pel  357 (447)
                      ||+|||+ .|++||||+|+||+++.++                    .++|+|||.+.......    ......|++||.
T Consensus       110 ~l~~lh~-~~i~h~dl~p~ni~i~~~~--------------------~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~PE~  168 (253)
T cd05122         110 GLEYLHS-NGIIHRDIKAANILLTSDG--------------------EVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEV  168 (253)
T ss_pred             HHHHhhc-CCEecCCCCHHHEEEccCC--------------------eEEEeeccccccccccccccceecCCcccCHHH
Confidence            9999999 9999999999999999887                    79999999998765432    223344789998


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHH-hhccCCCCCccchHHHHHHHHHhcccc-----CHHH
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDML-LLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKE  431 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l-~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~e  431 (447)
                      +.+...+.+.|+|+ +|.+.+++..+..|+............. ......+....++.++.+||++||..|     |+.|
T Consensus       169 ~~~~~~~~~~Dv~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~~  247 (253)
T cd05122         169 INGKPYDYKADIWS-LGITAIELAEGKPPYSELPPMKALFKIATNGPPGLRNPEKWSDEFKDFLKKCLQKNPEKRPTAEQ  247 (253)
T ss_pred             HcCCCCCccccHHH-HHHHHHHHHhCCCCCCCCchHHHHHHHHhcCCCCcCcccccCHHHHHHHHHHccCChhhCCCHHH
Confidence            88766667779999 8999999999998886542222222221 111223333334889999999999999     9999


Q ss_pred             HHcCCC
Q 013230          432 AIFDPF  437 (447)
Q Consensus       432 lL~HPf  437 (447)
                      +++|||
T Consensus       248 ~l~~~~  253 (253)
T cd05122         248 LLKHPF  253 (253)
T ss_pred             HhcCCC
Confidence            999999

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.96  E-value=3.1e-28  Score=239.17  Aligned_cols=230  Identities=17%  Similarity=0.162  Sum_probs=175.9

Q ss_pred             CCcceEEeccccceEEEEece--------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCccc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN--------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACT  203 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~--------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~  203 (447)
                      +|++.+.||+|+||.||+|..        +|+|.++..       ......+.+.+|+.++.++ +|        ||   
T Consensus         3 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~-------~~~~~~~~~~~E~~~l~~l~~h--------p~---   64 (297)
T cd05089           3 DIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEF-------ASENDHRDFAGELEVLCKLGHH--------PN---   64 (297)
T ss_pred             cceeeeeecCCCcceEEEEEecCCCCcceeEEEEcccc-------CCHHHHHHHHHHHHHHHhhcCC--------Cc---
Confidence            469999999999999999862        577766521       1122345688999999998 45        66   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----------------
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----------------  266 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----------------  266 (447)
                       |+++++++..                              .+..|++|||+.+| +|.+++.                 
T Consensus        65 -iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~  112 (297)
T cd05089          65 -IINLLGACEN------------------------------RGYLYIAIEYAPYG-NLLDFLRKSRVLETDPAFAKEHGT  112 (297)
T ss_pred             -hhheEEEEcc------------------------------CCcceEEEEecCCC-cHHHHHHhccccccccccccccCc
Confidence             9999998532                              45689999999988 9988763                 


Q ss_pred             ---CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCC
Q 013230          267 ---LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG  343 (447)
Q Consensus       267 ---l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~  343 (447)
                         +++..++.++.||+.||+|||+ .||+||||||+|||++.++                    .+||+|||++.....
T Consensus       113 ~~~l~~~~~~~i~~qi~~al~~lH~-~~ivH~dlkp~Nill~~~~--------------------~~kl~dfg~~~~~~~  171 (297)
T cd05089         113 ASTLTSQQLLQFASDVATGMQYLSE-KQFIHRDLAARNVLVGENL--------------------ASKIADFGLSRGEEV  171 (297)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHH-CCcccCcCCcceEEECCCC--------------------eEEECCcCCCccccc
Confidence               6778899999999999999999 9999999999999999886                    799999999864321


Q ss_pred             C---C-EEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHH
Q 013230          344 E---D-IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRS  418 (447)
Q Consensus       344 ~---g-~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~d  418 (447)
                      .   . ......|++||.+.+...+.+.|+|+ +|++.+++++ |..|+............. .....+.+..++.++++
T Consensus       172 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwS-lG~il~el~t~g~~pf~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  249 (297)
T cd05089         172 YVKKTMGRLPVRWMAIESLNYSVYTTKSDVWS-FGVLLWEIVSLGGTPYCGMTCAELYEKLP-QGYRMEKPRNCDDEVYE  249 (297)
T ss_pred             eeccCCCCcCccccCchhhccCCCCchhhHHH-HHHHHHHHHcCCCCCCCCCCHHHHHHHHh-cCCCCCCCCCCCHHHHH
Confidence            1   0 01112478999988777777889999 9999999986 888886544333333222 22233344568899999


Q ss_pred             HHHHhcccc-----CHHHHHcC
Q 013230          419 LKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       419 Ll~~mL~~d-----sa~elL~H  435 (447)
                      |+.+||..+     |++++++.
T Consensus       250 li~~~l~~~p~~Rp~~~~i~~~  271 (297)
T cd05089         250 LMRQCWRDRPYERPPFAQISVQ  271 (297)
T ss_pred             HHHHHcCCChhhCcCHHHHHHH
Confidence            999999999     88888644

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.96  E-value=4.2e-28  Score=236.05  Aligned_cols=231  Identities=17%  Similarity=0.200  Sum_probs=176.6

Q ss_pred             CCcceEEeccccceEEEEec----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          133 DPENIVKVGEGTFGEAFLAG----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      .|++++.||+|+||.||+|.          .||+|.+....        ......+.+|+.+++.++|        ||  
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~--------~~~~~~~~~e~~~l~~l~h--------~~--   66 (284)
T cd05081           5 HLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHST--------AEHLRDFEREIEILKSLQH--------DN--   66 (284)
T ss_pred             cceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCC--------HHHHHHHHHHHHHHHhCCC--------CC--
Confidence            46899999999999999975          38999876331        2234578899999999998        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHH
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLV  277 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~  277 (447)
                        |+++++++...                            ....+|+||||+.+| +|.+++.     +++..+..++.
T Consensus        67 --iv~~~~~~~~~----------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~~l~~~~~~~~~~  115 (284)
T cd05081          67 --IVKYKGVCYSA----------------------------GRRNLRLVMEYLPYG-SLRDYLQKHRERLDHRKLLLYAS  115 (284)
T ss_pred             --eeEEEEEEccC----------------------------CCCceEEEEEecCCC-CHHHHHHhcCcCCCHHHHHHHHH
Confidence              99999875431                            134689999999988 9999874     78999999999


Q ss_pred             HHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE--------EE
Q 013230          278 QVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF--------FL  349 (447)
Q Consensus       278 Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i--------~~  349 (447)
                      |++.||+|||+ .||+||||||+|||++.++                    .+||+|||+++........        ..
T Consensus       116 ~l~~aL~~LH~-~~i~H~dlkp~nili~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~  174 (284)
T cd05081         116 QICKGMEYLGS-KRYVHRDLATRNILVESEN--------------------RVKIGDFGLTKVLPQDKEYYKVREPGESP  174 (284)
T ss_pred             HHHHHHHHHHH-CCceeccCCHhhEEECCCC--------------------eEEECCCcccccccCCCcceeecCCCCCc
Confidence            99999999999 9999999999999999887                    7999999999875432211        01


Q ss_pred             ecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChh--HH-------------HHHHHHHHhhccCCCCCccchH
Q 013230          350 DLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV--LW-------------LVYLVDMLLLKKTFDRSSKDER  414 (447)
Q Consensus       350 ~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~--~~-------------~~~~~~~l~~~~~~~~~~~~s~  414 (447)
                      ..|++||...+.....+.|+|+ +|.+.++++++..+....  .+             ...+.+.+.....++.+...+.
T Consensus       175 ~~y~aPE~~~~~~~~~~~Di~s-lG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (284)
T cd05081         175 IFWYAPESLTESKFSVASDVWS-FGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIELLKNNGRLPAPPGCPA  253 (284)
T ss_pred             eEeeCHHHhccCCcChHHHHHH-HHHHHHHHhhcCCcCCCcchhhhhhcccccccccchHHHHHHHhcCCcCCCCCCCCH
Confidence            2367899888777777789999 999998888764332211  01             0111222322334444556788


Q ss_pred             HHHHHHHHhcccc-----CHHHHHc
Q 013230          415 DLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       415 ~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      ++.+|+.+||..+     |+.|+++
T Consensus       254 ~~~~li~~cl~~~p~~Rpt~~ei~~  278 (284)
T cd05081         254 EIYAIMKECWNNDPSQRPSFSELAL  278 (284)
T ss_pred             HHHHHHHHHccCChhhCCCHHHHHH
Confidence            9999999999999     9999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.96  E-value=2.8e-28  Score=265.21  Aligned_cols=127  Identities=20%  Similarity=0.245  Sum_probs=108.2

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+++++||+|+||.||+|++      ||+|++.....     ........+.+|+.+++.++|        +|    |+
T Consensus         5 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~-----~~~~~~~~~~~E~~~l~~l~h--------p~----Iv   67 (669)
T cd05610           5 EFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADM-----INKNMVHQVQAERDALALSKS--------PF----IV   67 (669)
T ss_pred             CEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhc-----cCHHHHHHHHHHHHHHHhcCC--------CC----cC
Confidence            459999999999999999973      99999875432     222334678899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              .+.+||||||+.|| +|.+++.    +++..++.++.||+.|
T Consensus        68 ~~~~~~~~------------------------------~~~~~lVmEy~~g~-~L~~li~~~~~l~~~~~~~i~~qil~a  116 (669)
T cd05610          68 HLYYSLQS------------------------------ANNVYLVMEYLIGG-DVKSLLHIYGYFDEEMAVKYISEVALA  116 (669)
T ss_pred             eEEEEEEE------------------------------CCEEEEEEeCCCCC-CHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            99987543                              46799999999987 9999886    7899999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRND  308 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~  308 (447)
                      |+|||. +|||||||||+|||++.++
T Consensus       117 L~yLH~-~gIiHrDLKP~NILl~~~g  141 (669)
T cd05610         117 LDYLHR-HGIIHRDLKPDNMLISNEG  141 (669)
T ss_pred             HHHHHh-CCEEeCCccHHHEEEcCCC
Confidence            999999 9999999999999998654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.96  E-value=1.7e-28  Score=242.54  Aligned_cols=237  Identities=15%  Similarity=0.109  Sum_probs=178.6

Q ss_pred             cceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeee
Q 013230          135 ENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      .+.+.+|.|+++.|+++.    .||+|++....      ........+.+|+.+++.++|        +|    |+++++
T Consensus         5 ~i~~~~~~~~~v~~~~~~~~~~~~avK~~~~~~------~~~~~~~~~~~Ei~~l~~l~h--------~~----i~~~~~   66 (314)
T cd08216           5 LIGKCFEDLMIVHLAKHKPTNTLVAVKKINLDS------CSKEDLKLLQQEIITSRQLQH--------PN----ILPYVT   66 (314)
T ss_pred             hhhHhhcCCceEEEEEecCCCCEEEEEEEeccc------cchhHHHHHHHHHHHHHhcCC--------cc----hhhhhh
Confidence            455566777777777765    49999987542      223345678999999999998        88    999999


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHHHH
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~gL~  284 (447)
                      ++..                              ++.+|++|||+.+| +|.+++.      +++..++.++.||+.||+
T Consensus        67 ~~~~------------------------------~~~~~~~~e~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~  115 (314)
T cd08216          67 SFIV------------------------------DSELYVVSPLMAYG-SCEDLLKTHFPEGLPELAIAFILKDVLNALD  115 (314)
T ss_pred             eeec------------------------------CCeEEEEEeccCCC-CHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence            8643                              56699999999988 8988875      789999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE------------EEEecC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI------------FFLDLS  352 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~------------i~~~~~  352 (447)
                      |||+ .+|+||||||+|||++.++                    .+||+|||.+......+.            .....|
T Consensus       116 ~LH~-~~ivH~dlk~~Nili~~~~--------------------~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  174 (314)
T cd08216         116 YIHS-KGFIHRSVKASHILLSGDG--------------------KVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPW  174 (314)
T ss_pred             HHHH-CCeecCCCCcceEEEecCC--------------------ceEEecCccceeeccccccccccccccccccccccc
Confidence            9999 9999999999999999887                    799999999875432211            111237


Q ss_pred             CCCCCCCCC--CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc---------------------------
Q 013230          353 QDPELFSGP--KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK---------------------------  403 (447)
Q Consensus       353 ~~pelf~g~--~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~---------------------------  403 (447)
                      ++||.+.+.  ......|+|+ +|.+.++++.|..|+..............+.                           
T Consensus       175 ~aPE~~~~~~~~~~~~~Diws-~G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (314)
T cd08216         175 LSPEVLQQNLQGYNEKSDIYS-VGITACELANGHVPFKDMPATQMLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHP  253 (314)
T ss_pred             cCHHHhcCCCCCCCcchhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCccccccCchhhhcCCcCccccccccc
Confidence            889988663  2445679999 8999999999999987542222111111100                           


Q ss_pred             -----cCCCCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCC
Q 013230          404 -----KTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       404 -----~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~  442 (447)
                           ........++.++.+|+.+||.+|     |++++|+||||+.+.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~p~~~~~~  302 (314)
T cd08216         254 NNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLNHSFFKQCK  302 (314)
T ss_pred             chhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhcCchHhhhc
Confidence                 000112234678999999999999     999999999999764

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.96  E-value=3.1e-28  Score=239.87  Aligned_cols=230  Identities=20%  Similarity=0.255  Sum_probs=176.4

Q ss_pred             CCcceEEeccccceEEEEec-------------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCC
Q 013230          133 DPENIVKVGEGTFGEAFLAG-------------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDT  198 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-------------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~  198 (447)
                      +|++.+.||+|+||.||+|+             .+|+|.+...       ........+.+|+.+++.+ +|        
T Consensus        16 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~-------~~~~~~~~~~~E~~~l~~l~~h--------   80 (304)
T cd05101          16 KLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDD-------ATEKDLSDLVSEMEMMKMIGKH--------   80 (304)
T ss_pred             HeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccc-------cchHHHHHHHHHHHHHHhhccC--------
Confidence            34889999999999999985             2788876532       1122346788999999999 56        


Q ss_pred             CCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------------
Q 013230          199 LNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------------  266 (447)
Q Consensus       199 ~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------------  266 (447)
                      ||    |+++++++..                              ....|++|||+.+| +|.+++.            
T Consensus        81 ~~----i~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~  125 (304)
T cd05101          81 KN----IINLLGACTQ------------------------------DGPLYVIVEYASKG-NLREYLRARRPPGMEYSYD  125 (304)
T ss_pred             CC----chheeEEEec------------------------------CCceEEEEecCCCC-cHHHHHHhcCCcccccccc
Confidence            77    9999998543                              45689999999988 9988763            


Q ss_pred             --------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccce
Q 013230          267 --------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLS  338 (447)
Q Consensus       267 --------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla  338 (447)
                              ++...+..++.||+.||+|||+ +||+||||||+|||++.++                    .+||+|||++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~qi~~al~~LH~-~givH~dlkp~Nili~~~~--------------------~~kl~D~g~~  184 (304)
T cd05101         126 IARVPDEQMTFKDLVSCTYQVARGMEYLAS-QKCIHRDLAARNVLVTENN--------------------VMKIADFGLA  184 (304)
T ss_pred             cccCCcccccHHHHHHHHHHHHHHHHHHHH-CCeeecccccceEEEcCCC--------------------cEEECCCccc
Confidence                    5667788999999999999999 9999999999999999887                    7999999999


Q ss_pred             eecCCCCE-------EEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCc
Q 013230          339 RINTGEDI-------FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSS  410 (447)
Q Consensus       339 ~~~~~~g~-------i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~  410 (447)
                      +.......       .....|++||.+.+...+.+.|+|+ +|.+.+++++ +..|+........ .+.+........+.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s-lG~~l~el~~~g~~p~~~~~~~~~-~~~~~~~~~~~~~~  262 (304)
T cd05101         185 RDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWS-FGVLMWEIFTLGGSPYPGIPVEEL-FKLLKEGHRMDKPA  262 (304)
T ss_pred             eecccccccccccCCCCCceeeCchhhccCCCCchhhHHH-HHHHHHHHHcCCCCCcccCCHHHH-HHHHHcCCcCCCCC
Confidence            86543211       1112478999888777777789999 8999999987 5666654333322 22222223333445


Q ss_pred             cchHHHHHHHHHhcccc-----CHHHHHcC
Q 013230          411 KDERDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       411 ~~s~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      ..+.++++|+.+||..+     |+.|+++.
T Consensus       263 ~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  292 (304)
T cd05101         263 NCTNELYMMMRDCWHAIPSHRPTFKQLVED  292 (304)
T ss_pred             CCCHHHHHHHHHHcccChhhCCCHHHHHHH
Confidence            67899999999999988     89988764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.96  E-value=3.6e-29  Score=249.69  Aligned_cols=239  Identities=21%  Similarity=0.268  Sum_probs=176.6

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |.+....|+|-||.|.+|++      ||||+|.....         ....=++|+.||++|+..-.     .+ -.++++
T Consensus       434 Y~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~---------M~KtGl~EleiLkKL~~AD~-----Ed-k~Hclr  498 (752)
T KOG0670|consen  434 YEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEV---------MHKTGLKELEILKKLNDADP-----ED-KFHCLR  498 (752)
T ss_pred             eEEEeccccceeeeeeeccccCCCCeeEEEEeecchH---------HhhhhhHHHHHHHHhhccCc-----hh-hhHHHH
Confidence            58899999999999999984      99999985432         33445899999999976221     11 112677


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------CCHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------LNINEARSLLVQVT  280 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------l~~~~~~~i~~Qil  280 (447)
                      |+..|.                              ..+++|+|+|.+.  .+|.++++       |....++.|+.|++
T Consensus       499 l~r~F~------------------------------hknHLClVFE~Ls--lNLRevLKKyG~nvGL~ikaVRsYaqQLf  546 (752)
T KOG0670|consen  499 LFRHFK------------------------------HKNHLCLVFEPLS--LNLREVLKKYGRNVGLHIKAVRSYAQQLF  546 (752)
T ss_pred             HHHHhh------------------------------hcceeEEEehhhh--chHHHHHHHhCcccceeehHHHHHHHHHH
Confidence            777743                              3788999999988  78999887       88899999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE---EEecCCCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF---FLDLSQDPEL  357 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i---~~~~~~~pel  357 (447)
                      .||.+|-. |||+|.||||.|||+.....                   .+||||||.|-....+.+.   ..-+|.+||+
T Consensus       547 lALklLK~-c~vlHaDIKPDNiLVNE~k~-------------------iLKLCDfGSA~~~~eneitPYLVSRFYRaPEI  606 (752)
T KOG0670|consen  547 LALKLLKK-CGVLHADIKPDNILVNESKN-------------------ILKLCDFGSASFASENEITPYLVSRFYRAPEI  606 (752)
T ss_pred             HHHHHHHh-cCeeecccCccceEeccCcc-------------------eeeeccCccccccccccccHHHHHHhccCcce
Confidence            99999999 99999999999999999874                   7999999999877666432   2233677777


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCC--CCC-ChhHHHHH---------------------------------------
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGS--FPK-TNVLWLVY---------------------------------------  395 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~--~p~-~~~~~~~~---------------------------------------  395 (447)
                      ..|-.+++..|+|+ +|+.+|+.++|.  ||- +|..++.+                                       
T Consensus       607 iLG~~yd~~iD~WS-vgctLYElYtGkIlFpG~TNN~MLrl~me~KGk~p~KmlRKgqF~dqHFD~d~nf~~~e~D~vT~  685 (752)
T KOG0670|consen  607 ILGLPYDYPIDTWS-VGCTLYELYTGKILFPGRTNNQMLRLFMELKGKFPNKMLRKGQFKDQHFDQDLNFLYIEVDKVTE  685 (752)
T ss_pred             eecCcccCCcccee-eceeeEEeeccceecCCCCcHHHHHHHHHhcCCCcHHHhhhcchhhhhcccccceEEEecccccc
Confidence            77777777777777 777777777665  222 11111111                                       


Q ss_pred             ---------------HHHHHhhccCCCC-CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCC
Q 013230          396 ---------------LVDMLLLKKTFDR-SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSD  440 (447)
Q Consensus       396 ---------------~~~~l~~~~~~~~-~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~  440 (447)
                                     +...++..+.+|. ....=..|+|||.+||.+|     |+.|||+||||+.
T Consensus       686 r~~~~vm~~vkPtkdl~s~l~~~q~~~deq~~~~~~~rdLLdkml~LdP~KRit~nqAL~HpFi~~  751 (752)
T KOG0670|consen  686 REKRTVMVNVKPTKDLGSELIAVQRLPDEQPKIVQQLRDLLDKMLILDPEKRITVNQALKHPFITE  751 (752)
T ss_pred             ceeEEEecccCcchhHHHHHhccCCCCchhHHHHHHHHHHHHHHhccChhhcCCHHHHhcCCcccC
Confidence                           1111211122222 1134578999999999999     9999999999974

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.96  E-value=1.1e-28  Score=247.69  Aligned_cols=246  Identities=19%  Similarity=0.237  Sum_probs=183.4

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||+|+||.||+|++      +|+|++....      ........+.+|+.+++.++|        +|    ++
T Consensus        16 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------~~----iv   77 (343)
T cd07851          16 RYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPF------QSAIHAKRTYRELRLLKHMDH--------EN----VI   77 (343)
T ss_pred             ceEEEEEeccCCceEEEEEEECCCCcEEEEEeccccc------chhhHHHHHHHHHHHHHhccC--------CC----HH
Confidence            459999999999999999973      8999876431      122234567889999999988        88    89


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGL  283 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL  283 (447)
                      ++.+++...+.                        ......+|+|+||+ ++ +|.+++.   +++..++.++.||+.||
T Consensus        78 ~~~~~~~~~~~------------------------~~~~~~~~lv~e~~-~~-~L~~~~~~~~l~~~~~~~~~~ql~~aL  131 (343)
T cd07851          78 GLLDVFTPASS------------------------LEDFQDVYLVTHLM-GA-DLNNIVKCQKLSDDHIQFLVYQILRGL  131 (343)
T ss_pred             HHHHHhhcccc------------------------ccccccEEEEEecC-CC-CHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            88887432110                        01123489999998 45 9998876   89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--CEEEEecCCCCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--DIFFLDLSQDPELFSGP  361 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--g~i~~~~~~~pelf~g~  361 (447)
                      +|||+ .||+||||||+||+++.++                    .+||+|||++......  +......|++||.+.+.
T Consensus       132 ~~LH~-~gi~H~dlkp~Nill~~~~--------------------~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~  190 (343)
T cd07851         132 KYIHS-AGIIHRDLKPSNIAVNEDC--------------------ELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNW  190 (343)
T ss_pred             HHHHH-CCeecCCCCHHHeEECCCC--------------------CEEEccccccccccccccCCcccccccCHHHHhCC
Confidence            99999 9999999999999999987                    7999999999876433  22233447888877543


Q ss_pred             -CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhcc----------------------------CCC-CCcc
Q 013230          362 -KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKK----------------------------TFD-RSSK  411 (447)
Q Consensus       362 -~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~----------------------------~~~-~~~~  411 (447)
                       ....+.|+|+ +|.+.+++.+|..|+........+..+.....                            .+. ....
T Consensus       191 ~~~~~~~Dvws-lGv~l~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (343)
T cd07851         191 MHYNQTVDIWS-VGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEELLQKISSESARNYIQSLPQMPKKDFKEVFSG  269 (343)
T ss_pred             CCCCchHhHHH-HHHHHHHHHhCCCCCCCCChHHHHHHHHHhcCCCCHHHHhhccchhHHHHHHhccccCCCCHHHHhcc
Confidence             3455679999 89999999999888754332222211110000                            000 0123


Q ss_pred             chHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          412 DERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       412 ~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                      .++++.|||.+||..|     |+.++++||||++...+
T Consensus       270 ~s~~l~dli~~~l~~~P~~Rpt~~ell~h~~~~~~~~~  307 (343)
T cd07851         270 ANPLAIDLLEKMLVLDPDKRITAAEALAHPYLAEYHDP  307 (343)
T ss_pred             CCHHHHHHHHHhCCCChhhCCCHHHHhcCCCccccCCC
Confidence            5889999999999999     99999999999987655

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.96  E-value=4.9e-28  Score=232.64  Aligned_cols=232  Identities=19%  Similarity=0.169  Sum_probs=179.6

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||+|+||.||+|..      +|+|.+.....     ......+.+.+|+.++++++|        +|    ++
T Consensus         3 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-----~~~~~~~~~~~ei~~l~~~~~--------~~----i~   65 (267)
T cd08224           3 NFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEM-----MDAKARQDCLKEIDLLKQLDH--------PN----VI   65 (267)
T ss_pred             ceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccc-----cchhhHHHHHHHHHHHHhCCC--------CC----ee
Confidence            469999999999999999973      89998864322     222334678999999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQ  278 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Q  278 (447)
                      ++++.+..                              .+..++||||+.+| +|..++.        +++.+++.++.|
T Consensus        66 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~~~  114 (267)
T cd08224          66 KYLASFIE------------------------------NNELNIVLELADAG-DLSRMIKHFKKQKRLIPERTIWKYFVQ  114 (267)
T ss_pred             eeeeeeec------------------------------CCeEEEEEecCCCC-CHHHHHHHhcccCCCcCHHHHHHHHHH
Confidence            99998643                              45689999999988 9988763        789999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCC
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQ  353 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~  353 (447)
                      ++.||+|||+ .||+||||||+||+++.++                    .++|+|||+++......     ......|.
T Consensus       115 l~~~l~~lh~-~~i~h~dl~p~nil~~~~~--------------------~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~  173 (267)
T cd08224         115 LCSALEHMHS-KRIMHRDIKPANVFITATG--------------------VVKLGDLGLGRFFSSKTTAAHSLVGTPYYM  173 (267)
T ss_pred             HHHHHHHHHh-CCEecCCcChhhEEECCCC--------------------cEEEeccceeeeccCCCcccceecCCcccc
Confidence            9999999999 9999999999999999887                    79999999987654321     11223478


Q ss_pred             CCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHH-HHHHHHHHhhccCCCCCc-cchHHHHHHHHHhcccc----
Q 013230          354 DPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLW-LVYLVDMLLLKKTFDRSS-KDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       354 ~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~-~~~~~~~l~~~~~~~~~~-~~s~~l~dLl~~mL~~d----  427 (447)
                      +||.+.+.....+.|+|+ +|.+.++++++..|+..... .....+.+......+.+. ..+.+++++|.+||..+    
T Consensus       174 apE~~~~~~~~~~~Di~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~R  252 (267)
T cd08224         174 SPERIHENGYNFKSDIWS-LGCLLYEMAALQSPFYGDKMNLYSLCKKIEKCDYPPLPADHYSEELRDLVSRCINPDPEKR  252 (267)
T ss_pred             CHHHhccCCCCchhcHHH-HHHHHHHHHHCCCCcccCCccHHHHHhhhhcCCCCCCChhhcCHHHHHHHHHHcCCCcccC
Confidence            999888877777779999 99999999999988754321 111122221111222222 57789999999999998    


Q ss_pred             -CHHHHHc
Q 013230          428 -SAKEAIF  434 (447)
Q Consensus       428 -sa~elL~  434 (447)
                       |+.++++
T Consensus       253 p~~~~il~  260 (267)
T cd08224         253 PDISYVLQ  260 (267)
T ss_pred             CCHHHHHH
Confidence             8888764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.96  E-value=4.7e-28  Score=232.98  Aligned_cols=222  Identities=21%  Similarity=0.281  Sum_probs=171.5

Q ss_pred             EeccccceEEEEec--------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeee
Q 013230          139 KVGEGTFGEAFLAG--------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       139 ~LG~G~fG~V~~a~--------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      .||+|+||.||+|.        .||+|++...       ......+.+.+|+.++++++|        +|    |+++++
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~-------~~~~~~~~~~~E~~~l~~l~h--------~~----ii~~~~   62 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNE-------NEKSVRDEMMREAEIMHQLDN--------PY----IVRMIG   62 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccc-------cChHHHHHHHHHHHHHHhcCC--------CC----eEEEEE
Confidence            48999999999874        2888887633       122344678899999999988        88    999998


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHHHHH
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAGLAV  285 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~gL~y  285 (447)
                      ++.                               ....|+||||+.+| +|.+++.     +++..+..++.||+.||+|
T Consensus        63 ~~~-------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~  110 (257)
T cd05115          63 VCE-------------------------------AEALMLVMEMASGG-PLNKFLSGKKDEITVSNVVELMHQVSMGMKY  110 (257)
T ss_pred             EEc-------------------------------CCCeEEEEEeCCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            742                               24589999999988 9998874     8999999999999999999


Q ss_pred             HHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEEE--------EecCCCCCC
Q 013230          286 AEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFF--------LDLSQDPEL  357 (447)
Q Consensus       286 lH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i~--------~~~~~~pel  357 (447)
                      ||+ +|++||||||+|||++.++                    .+||+|||+++.........        ...|++||.
T Consensus       111 lH~-~~i~H~dlkp~nil~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  169 (257)
T cd05115         111 LEG-KNFVHRDLAARNVLLVNQH--------------------YAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPEC  169 (257)
T ss_pred             HHh-cCeeecccchheEEEcCCC--------------------cEEeccCCccccccCCccceeccCCCCCCcccCCHHH
Confidence            999 9999999999999999886                    79999999997543321100        124788998


Q ss_pred             CCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHH
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKE  431 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~e  431 (447)
                      +.+...+...|+|+ +|.+.++++. +..|+......... ..+......+.+...++++.+++.+|+.+|     ++.+
T Consensus       170 ~~~~~~~~~~Di~s-lG~~l~el~~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~li~~c~~~~~~~Rp~~~~  247 (257)
T cd05115         170 INFRKFSSRSDVWS-YGITMWEAFSYGQKPYKKMKGPEVM-SFIEQGKRLDCPAECPPEMYALMKDCWIYKWEDRPNFAK  247 (257)
T ss_pred             HccCCCCchhhHHH-HHHHHHHHhcCCCCCcCcCCHHHHH-HHHHCCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHH
Confidence            87766677789999 8999999886 88888654332222 222222334445667899999999999988     6666


Q ss_pred             HHc
Q 013230          432 AIF  434 (447)
Q Consensus       432 lL~  434 (447)
                      +++
T Consensus       248 i~~  250 (257)
T cd05115         248 VEE  250 (257)
T ss_pred             HHH
Confidence            643

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.96  E-value=2.8e-28  Score=239.83  Aligned_cols=242  Identities=22%  Similarity=0.297  Sum_probs=177.7

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.++||+|+||.||+|.+      +|+|++.....      .........+|+.+++.++|        +|    |+
T Consensus         9 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~------~~~~~~~~~~e~~~l~~l~h--------~~----i~   70 (311)
T cd07866           9 DYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNE------KDGFPITALREIKILKKLKH--------PN----VV   70 (311)
T ss_pred             cEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccC------CCCcchhHHHHHHHHHhcCC--------CC----cc
Confidence            459999999999999999973      89998875421      12223456789999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      ++++++......                      .......+|+||||+. + +|...+.     +++..++.++.||+.
T Consensus        71 ~~~~~~~~~~~~----------------------~~~~~~~~~lv~~~~~-~-~l~~~~~~~~~~~~~~~~~~i~~~l~~  126 (311)
T cd07866          71 PLIDMAVERPDK----------------------SKRKRGSVYMVTPYMD-H-DLSGLLENPSVKLTESQIKCYMLQLLE  126 (311)
T ss_pred             chhhheeccccc----------------------ccccCceEEEEEecCC-c-CHHHHHhccccCCCHHHHHHHHHHHHH
Confidence            999885432110                      0122456899999997 3 6665543     899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----------------
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----------------  345 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----------------  345 (447)
                      ||+|||+ .||+||||||+|||++.++                    .+||+|||+++......                
T Consensus       127 al~~lH~-~~i~H~dl~p~nil~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  185 (311)
T cd07866         127 GINYLHE-NHILHRDIKAANILIDNQG--------------------ILKIADFGLARPYDGPPPNPKGGGGGGTRKYTN  185 (311)
T ss_pred             HHHHHHh-CCeecCCCCHHHEEECCCC--------------------CEEECcCccchhccCCCcccccCCccccccccc
Confidence            9999999 9999999999999999987                    79999999997653321                


Q ss_pred             EEEEecCCCCCCCCCCC-CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh----------------------
Q 013230          346 IFFLDLSQDPELFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL----------------------  402 (447)
Q Consensus       346 ~i~~~~~~~pelf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~----------------------  402 (447)
                      .+....|++||.+.+.. .....|+|+ +|.+.++++.|..|+...............                      
T Consensus       186 ~~~~~~y~aPE~~~~~~~~~~~~Dv~s-lG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (311)
T cd07866         186 LVVTRWYRPPELLLGERRYTTAVDIWG-IGCVFAEMFTRRPILQGKSDIDQLHLIFKLCGTPTEETWPGWRSLPGCEGVH  264 (311)
T ss_pred             ceeccCcCChHHhhCCCccCchhHhHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhchhhhhcccccccc
Confidence            12234488999876543 455679999 899999999998877533221111111000                      


Q ss_pred             -ccCCCC-----CccchHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          403 -KKTFDR-----SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       403 -~~~~~~-----~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                       ....+.     ....++++++||.+||..|     |+.|++.||||
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~~~~f  311 (311)
T cd07866         265 SFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALEHPYF  311 (311)
T ss_pred             cCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhcCCCC
Confidence             000000     1234578999999999999     99999999998

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.96  E-value=3.5e-28  Score=238.42  Aligned_cols=230  Identities=18%  Similarity=0.212  Sum_probs=173.5

Q ss_pred             CCcceEEeccccceEEEEece--------------------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN--------------------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLR  192 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~--------------------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~  192 (447)
                      +|++.++||+|+||.||+|+.                    ||+|.+....       .......+.+|+.++++++|  
T Consensus         6 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~~~ei~~l~~l~h--   76 (295)
T cd05097           6 QLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADV-------TKTARNDFLKEIKIMSRLKN--   76 (295)
T ss_pred             hCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCC-------CHHHHHHHHHHHHHHHhCCC--
Confidence            459999999999999999852                    7888876431       12234568899999999998  


Q ss_pred             cCCCCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------
Q 013230          193 RNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------  266 (447)
Q Consensus       193 ~~~~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------  266 (447)
                            +|    ++++++++..                              .+..|+||||+.+| +|.+++.      
T Consensus        77 ------~~----i~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~  115 (295)
T cd05097          77 ------PN----IIRLLGVCVS------------------------------DDPLCMITEYMENG-DLNQFLSQREIES  115 (295)
T ss_pred             ------CC----cCeEEEEEcC------------------------------CCccEEEEecCCCC-cHHHHHHhccccc
Confidence                  88    9999998532                              56689999999988 9988763      


Q ss_pred             ----------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeecc
Q 013230          267 ----------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFT  336 (447)
Q Consensus       267 ----------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG  336 (447)
                                +++..+..++.|++.||+|||+ .|++||||||+|||++.++                    .+||+|||
T Consensus       116 ~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~-~~i~H~dlkp~Nill~~~~--------------------~~kl~dfg  174 (295)
T cd05097         116 TFTHANNIPSVSIANLLYMAVQIASGMKYLAS-LNFVHRDLATRNCLVGNHY--------------------TIKIADFG  174 (295)
T ss_pred             cccccccCCcccHHHHHHHHHHHHHHHHHHHh-cCeeccccChhhEEEcCCC--------------------cEEecccc
Confidence                      4677889999999999999999 9999999999999999876                    79999999


Q ss_pred             ceeecCCCCE-------EEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc--CCCCCChhHHHHHHHHH---Hhh--
Q 013230          337 LSRINTGEDI-------FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE--GSFPKTNVLWLVYLVDM---LLL--  402 (447)
Q Consensus       337 la~~~~~~g~-------i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~--~~~p~~~~~~~~~~~~~---l~~--  402 (447)
                      +++.......       .....|++||.+.+...+...|+|+ +|.+.+++++  +..|+............   ...  
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwS-lG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  253 (295)
T cd05097         175 MSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWA-FGVTLWEMFTLCKEQPYSLLSDEQVIENTGEFFRNQG  253 (295)
T ss_pred             cccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHH-HHHHHHHHHHcCCCCCCcccChHHHHHHHHHhhhhcc
Confidence            9976433211       1122478999887767777789999 8999999876  44666433222211111   110  


Q ss_pred             cc-CCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          403 KK-TFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       403 ~~-~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      .. ....+...++.+++|+.+||.+|     |++++++
T Consensus       254 ~~~~~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~  291 (295)
T cd05097         254 RQIYLSQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHH  291 (295)
T ss_pred             ccccCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence            11 12223456789999999999998     8888864

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.96  E-value=4e-28  Score=232.74  Aligned_cols=223  Identities=22%  Similarity=0.249  Sum_probs=176.0

Q ss_pred             EEeccccceEEEEec---------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          138 VKVGEGTFGEAFLAG---------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~---------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      ++||+|+||.||+|+         .+|+|.+.....       ....+.+.+|+.+++.++|        +|    |+++
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~-------~~~~~~~~~e~~~l~~l~h--------~~----iv~~   61 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHI-------AAGKKEFLREASVMAQLDH--------PC----IVRL   61 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccc-------hHHHHHHHHHHHHHHhcCC--------CC----eeeE
Confidence            469999999999985         488998764421       1344678899999999988        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~  284 (447)
                      ++++.                               .+..++||||+.+| +|.+++.    +++..+..++.|++.||+
T Consensus        62 ~~~~~-------------------------------~~~~~~v~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~qi~~~l~  109 (257)
T cd05060          62 IGVCK-------------------------------GEPLMLVMELAPLG-PLLKYLKKRREIPVSDLKELAHQVAMGMA  109 (257)
T ss_pred             EEEEc-------------------------------CCceEEEEEeCCCC-cHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            98732                               24589999999988 9999886    899999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEEE--------EecCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFF--------LDLSQDPE  356 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i~--------~~~~~~pe  356 (447)
                      |||. .+++||||||+|||++.++                    .+||+|||+++........+        ...|++||
T Consensus       110 ~lh~-~~i~H~di~p~nili~~~~--------------------~~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~aPE  168 (257)
T cd05060         110 YLES-KHFVHRDLAARNVLLVNRH--------------------QAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPE  168 (257)
T ss_pred             HHhh-cCeeccCcccceEEEcCCC--------------------cEEeccccccceeecCCcccccccCccccccccCHH
Confidence            9999 9999999999999999887                    79999999998764432211        12378999


Q ss_pred             CCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      .+.+.......|+|+ +|.+.+++++ +..|+......... ..+......+.+...+..+++++.+||..|     |+.
T Consensus       169 ~~~~~~~~~~~Di~s-lG~~l~~~~~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~  246 (257)
T cd05060         169 CINYGKFSSKSDVWS-YGVTLWEAFSYGAKPYGEMKGAEVI-AMLESGERLPRPEECPQEIYSIMLSCWKYRPEDRPTFS  246 (257)
T ss_pred             HhcCCCCCccchHHH-HHHHHHHHHcCCCCCcccCCHHHHH-HHHHcCCcCCCCCCCCHHHHHHHHHHhcCChhhCcCHH
Confidence            998877777789999 8999999997 78887654332222 222223334455668899999999999998     888


Q ss_pred             HHHc
Q 013230          431 EAIF  434 (447)
Q Consensus       431 elL~  434 (447)
                      ++++
T Consensus       247 ~l~~  250 (257)
T cd05060         247 ELES  250 (257)
T ss_pred             HHHH
Confidence            8764

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.96  E-value=2.5e-28  Score=241.35  Aligned_cols=237  Identities=19%  Similarity=0.213  Sum_probs=181.6

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+..+.||+|+||.||+|++      +|+|.+.....     ........+.+|+.+++.++|        +|    +++
T Consensus        17 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~-----~~~~~~~~~~~e~~~l~~l~h--------~~----i~~   79 (308)
T cd06634          17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGK-----QSNEKWQDIIKEVRFLQKLRH--------PN----TIQ   79 (308)
T ss_pred             HHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccc-----cChHHHHHHHHHHHHHHhCCC--------CC----ccc
Confidence            47788999999999999984      89998864321     122234567899999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++..                              ....|+||||+. | +|.+++.     +++..++.++.|++.|
T Consensus        80 ~~~~~~~------------------------------~~~~~lv~e~~~-~-~l~~~~~~~~~~l~~~~~~~~~~~l~~~  127 (308)
T cd06634          80 YRGCYLR------------------------------EHTAWLVMEYCL-G-SASDLLEVHKKPLQEVEIAAVTHGALQG  127 (308)
T ss_pred             EEEEEEc------------------------------CCeeEEEEEccC-C-CHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            9998543                              456899999996 5 6666543     8899999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-EEEecCCCCCCCCC-
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-FFLDLSQDPELFSG-  360 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-i~~~~~~~pelf~g-  360 (447)
                      |.|||+ .+++||||||+|||++.++                    .+||+|||++........ .....|++||.+.+ 
T Consensus       128 l~~LH~-~~i~H~dl~p~nil~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~  186 (308)
T cd06634         128 LAYLHS-HNMIHRDVKAGNILLSEPG--------------------LVKLGDFGSASIMAPANXFVGTPYWMAPEVILAM  186 (308)
T ss_pred             HHHHHh-CCcccCCCCHHhEEECCCC--------------------cEEECCcccceeecCcccccCCccccCHHHHhhc
Confidence            999999 9999999999999999887                    799999999886544322 22234788998743 


Q ss_pred             --CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHH
Q 013230          361 --PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAI  433 (447)
Q Consensus       361 --~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL  433 (447)
                        .....+.|+|+ +|.+.++++.|..|+.+.......................+..+++||++||..+     ++++++
T Consensus       187 ~~~~~~~~~Di~s-lG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll  265 (308)
T cd06634         187 DEGQYDGKVDVWS-LGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLL  265 (308)
T ss_pred             ccCCCCcccchHH-HHHHHHHHHcCCCCCccccHHHHHHHHhhcCCCCcCcccccHHHHHHHHHHhhCCcccCCCHHHHh
Confidence              23455679999 8999999999999986643222222222111111123457889999999999988     999999


Q ss_pred             cCCCCCCC
Q 013230          434 FDPFFSDL  441 (447)
Q Consensus       434 ~HPff~~~  441 (447)
                      +|||+...
T Consensus       266 ~~~~~~~~  273 (308)
T cd06634         266 KHRFVLRE  273 (308)
T ss_pred             hCcccccc
Confidence            99999764

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.96  E-value=3.1e-28  Score=235.77  Aligned_cols=228  Identities=20%  Similarity=0.227  Sum_probs=176.8

Q ss_pred             CcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          134 PENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      |++.+.||+|+||.||+|.           .+|+|.+....       .......+.+|+.+++.++|        +|  
T Consensus         8 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~-------~~~~~~~~~~e~~~l~~~~~--------~~--   70 (277)
T cd05032           8 ITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENA-------SMRERIEFLNEASVMKEFNC--------HH--   70 (277)
T ss_pred             eeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCcc-------CHHHHHHHHHHHHHHHhCCC--------Cc--
Confidence            4899999999999999875           28888765321       11223567899999999988        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------------CC
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------------LN  268 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------------l~  268 (447)
                        |+++++++..                              ....|+||||+.+| +|.+++.              ++
T Consensus        71 --i~~~~~~~~~------------------------------~~~~~~v~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~  117 (277)
T cd05032          71 --VVRLLGVVST------------------------------GQPTLVVMELMAKG-DLKSYLRSRRPEAENNPGLGPPT  117 (277)
T ss_pred             --eeEEEEEEcC------------------------------CCCcEEEEecCCCC-CHHHHHHhcccchhhccCCCCCC
Confidence              9999998532                              46689999999988 9998874              46


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC---
Q 013230          269 INEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED---  345 (447)
Q Consensus       269 ~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g---  345 (447)
                      +..+..++.||+.||.|||+ .||+||||||+|||++.++                    .+||+|||+++......   
T Consensus       118 ~~~~~~~~~~i~~~l~~lH~-~~i~H~di~p~nill~~~~--------------------~~kl~dfg~~~~~~~~~~~~  176 (277)
T cd05032         118 LQKFIQMAAEIADGMAYLAA-KKFVHRDLAARNCMVAEDL--------------------TVKIGDFGMTRDIYETDYYR  176 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-CCccccccChheEEEcCCC--------------------CEEECCcccchhhccCcccc
Confidence            67889999999999999999 9999999999999999987                    79999999987643321   


Q ss_pred             ---E-EEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHH
Q 013230          346 ---I-FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLK  420 (447)
Q Consensus       346 ---~-i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl  420 (447)
                         . .....|++||.+.+.....+.|+|+ +|++.+++++ +..|+......... +.+......+.+...+.++.+|+
T Consensus       177 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s-lG~il~el~t~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~li  254 (277)
T cd05032         177 KGGKGLLPVRWMAPESLKDGVFTTKSDVWS-FGVVLWEMATLAEQPYQGLSNEEVL-KFVIDGGHLDLPENCPDKLLELM  254 (277)
T ss_pred             cCCCCCccccccCHHHHhcCCCCcccchHH-HHHHHHHhhccCCCCCccCCHHHHH-HHHhcCCCCCCCCCCCHHHHHHH
Confidence               1 1123478999887766777789999 9999999987 77777543322222 22222334444566789999999


Q ss_pred             HHhcccc-----CHHHHHc
Q 013230          421 KRLDKYN-----SAKEAIF  434 (447)
Q Consensus       421 ~~mL~~d-----sa~elL~  434 (447)
                      .+||+.+     |+.++++
T Consensus       255 ~~~l~~~p~~Rpt~~~l~~  273 (277)
T cd05032         255 RMCWQYNPKMRPTFLEIVS  273 (277)
T ss_pred             HHHcCCChhhCCCHHHHHH
Confidence            9999999     8888875

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.96  E-value=1.1e-28  Score=239.95  Aligned_cols=229  Identities=19%  Similarity=0.162  Sum_probs=177.8

Q ss_pred             CcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          134 PENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      |++.++||+|+||.||+|.           .||+|++....       .....+.+.+|+.++..++|        ||  
T Consensus         7 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~-------~~~~~~~~~~e~~~~~~l~h--------~~--   69 (283)
T cd05091           7 VRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKA-------EGPLREEFKHEAMMRSRLQH--------PN--   69 (283)
T ss_pred             HHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCC-------CHHHHHHHHHHHHHHhcCCC--------CC--
Confidence            4888999999999999985           38899876432       22234668899999999988        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----------------
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----------------  266 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----------------  266 (447)
                        |+++++++..                              .+..++++||+.+| +|.+++.                
T Consensus        70 --iv~~~~~~~~------------------------------~~~~~~~~e~~~~~-~l~~~l~~~~~~~~~~~~~~~~~  116 (283)
T cd05091          70 --IVCLLGVVTK------------------------------EQPLSMIFSYCSHS-DLHEFLVMRSPHSDVGSTDDDKT  116 (283)
T ss_pred             --cCeEEEEEcC------------------------------CCceEEEEEcCCCC-cHHHHHHhcCCCccccccccccc
Confidence              9999998532                              45689999999877 8888862                


Q ss_pred             ----CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC
Q 013230          267 ----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT  342 (447)
Q Consensus       267 ----l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~  342 (447)
                          +++..+..++.|++.||+|||+ +||+||||||+|||++.++                    .+||+|||+++...
T Consensus       117 ~~~~~~~~~~~~~~~ql~~aL~~lH~-~gi~H~dlkp~Nil~~~~~--------------------~~kl~Dfg~~~~~~  175 (283)
T cd05091         117 VKSTLEPADFVHIVTQIAAGMEFLSS-HHVVHKDLATRNVLVFDKL--------------------NVKISDLGLFREVY  175 (283)
T ss_pred             cccccCHHHHHHHHHHHHHHHHHHHH-cCccccccchhheEecCCC--------------------ceEecccccccccc
Confidence                6778889999999999999999 9999999999999999876                    79999999988653


Q ss_pred             CCC------EE-EEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchH
Q 013230          343 GED------IF-FLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDER  414 (447)
Q Consensus       343 ~~g------~i-~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~  414 (447)
                      ...      .. ....|++||.+.+.......|+|+ +|.+.+++++ +..|+......... ..+......+.+...+.
T Consensus       176 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s-lG~~l~el~~~g~~p~~~~~~~~~~-~~i~~~~~~~~~~~~~~  253 (283)
T cd05091         176 AADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWS-YGVVLWEVFSYGLQPYCGYSNQDVI-EMIRNRQVLPCPDDCPA  253 (283)
T ss_pred             cchheeeccCccCCccccCHHHHhcCCCCcchhHHH-HHHHHHHHHcCCCCCCCCCCHHHHH-HHHHcCCcCCCCCCCCH
Confidence            321      11 112488999887666677779999 9999999997 66676543333322 22322333344566889


Q ss_pred             HHHHHHHHhcccc-----CHHHHHcC
Q 013230          415 DLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       415 ~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      ++.+|+.+||+.+     |++++++.
T Consensus       254 ~~~~li~~cl~~~p~~RP~~~~i~~~  279 (283)
T cd05091         254 WVYTLMLECWNEFPSRRPRFKDIHSR  279 (283)
T ss_pred             HHHHHHHHHhCCCcccCCCHHHHHHH
Confidence            9999999999999     99998764

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.96  E-value=4.4e-28  Score=234.06  Aligned_cols=229  Identities=17%  Similarity=0.176  Sum_probs=179.6

Q ss_pred             CCcceEEeccccceEEEEece---------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN---------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACT  203 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~---------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~  203 (447)
                      +|++.+.||+|+||.||+|..         ||+|.+...       ........+..|+.+++.++|        ||   
T Consensus         5 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~-------~~~~~~~~~~~e~~~l~~l~h--------~n---   66 (269)
T cd05065           5 CVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSG-------YTEKQRRDFLSEASIMGQFDH--------PN---   66 (269)
T ss_pred             HeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCC-------CCHHHHHHHHHHHHHHHhCCC--------cC---
Confidence            358899999999999999862         899987533       122234678999999999988        88   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHH
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQ  278 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Q  278 (447)
                       |+++++++.                              .+...|+||||+.+| +|.+++.     ++...++.++.|
T Consensus        67 -i~~~~~~~~------------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~i~~~  114 (269)
T cd05065          67 -IIHLEGVVT------------------------------KSRPVMIITEFMENG-ALDSFLRQNDGQFTVIQLVGMLRG  114 (269)
T ss_pred             -cceEEEEEC------------------------------CCCceEEEEecCCCC-cHHHHHhhCCCCCCHHHHHHHHHH
Confidence             999998843                              256689999999987 9998875     789999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE----------EE
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI----------FF  348 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~----------i~  348 (447)
                      ++.||+|||+ +|++||||||+|||++.++                    .+||+|||+++.......          ..
T Consensus       115 l~~al~~lH~-~g~~H~dl~p~nili~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~  173 (269)
T cd05065         115 IAAGMKYLSE-MNYVHRDLAARNILVNSNL--------------------VCKVSDFGLSRFLEDDTSDPTYTSSLGGKI  173 (269)
T ss_pred             HHHHHHHHHH-CCEeecccChheEEEcCCC--------------------cEEECCCccccccccCccccccccccCCCc
Confidence            9999999999 9999999999999998876                    799999999876533211          11


Q ss_pred             EecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc
Q 013230          349 LDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       349 ~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d  427 (447)
                      ...|++||.+.+...+...|+|+ +|.+.++++. +..|+...........+ ......+.+...+.++.+++.+||..+
T Consensus       174 ~~~y~~PE~~~~~~~~~~~Dvws-lG~~l~e~l~~g~~p~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~li~~~l~~~  251 (269)
T cd05065         174 PIRWTAPEAIAYRKFTSASDVWS-YGIVMWEVMSYGERPYWDMSNQDVINAI-EQDYRLPPPMDCPTALHQLMLDCWQKD  251 (269)
T ss_pred             ceeecCHhHhccCcccchhhhhh-hHHHHHHHhcCCCCCCCCCCHHHHHHHH-HcCCcCCCcccCCHHHHHHHHHHcCCC
Confidence            12378999998877777789999 8999988775 77888654333332222 222344445567889999999999998


Q ss_pred             -----CHHHHHc
Q 013230          428 -----SAKEAIF  434 (447)
Q Consensus       428 -----sa~elL~  434 (447)
                           +++++++
T Consensus       252 p~~Rp~~~~i~~  263 (269)
T cd05065         252 RNARPKFGQIVS  263 (269)
T ss_pred             hhhCcCHHHHHH
Confidence                 8888875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.96  E-value=5.9e-28  Score=231.80  Aligned_cols=222  Identities=22%  Similarity=0.257  Sum_probs=172.7

Q ss_pred             EeccccceEEEEec--------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeee
Q 013230          139 KVGEGTFGEAFLAG--------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       139 ~LG~G~fG~V~~a~--------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      +||+|+||.||+|.        .+|+|++....      ......+.+.+|+.+++.++|        +|    |+++++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~------~~~~~~~~~~~e~~~l~~l~h--------~~----i~~~~~   63 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDN------NDPALKDELLREANVMQQLDN--------PY----IVRMIG   63 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCC------CcHHHHHHHHHHHHHHHhCCC--------CC----cceEEE
Confidence            68999999999983        38999876432      122345678999999999988        88    999988


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHH
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVA  286 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~yl  286 (447)
                      ++.                               .+..++||||+.+| +|.+++.    +++..+..++.|++.||+||
T Consensus        64 ~~~-------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~i~~qi~~al~~l  111 (257)
T cd05116          64 ICE-------------------------------AESWMLVMELAELG-PLNKFLQKNKHVTEKNITELVHQVSMGMKYL  111 (257)
T ss_pred             EEc-------------------------------CCCcEEEEecCCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            731                               24579999999988 9998875    89999999999999999999


Q ss_pred             HHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE--------EEecCCCCCCC
Q 013230          287 EAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF--------FLDLSQDPELF  358 (447)
Q Consensus       287 H~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i--------~~~~~~~pelf  358 (447)
                      |+ +||+||||||.|||++.++                    .+||+|||+++........        ....|++||.+
T Consensus       112 H~-~~i~H~dlkp~nill~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  170 (257)
T cd05116         112 EE-TNFVHRDLAARNVLLVTQH--------------------YAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECM  170 (257)
T ss_pred             HH-CCEeecccchhhEEEcCCC--------------------eEEECCCccccccCCCCCeeeecCCCCCCccccCHhHh
Confidence            99 9999999999999999886                    7999999999865433210        11347889988


Q ss_pred             CCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHH
Q 013230          359 SGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEA  432 (447)
Q Consensus       359 ~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~el  432 (447)
                      .+.....+.|+|+ +|.+.+++++ +..|+....... ....+......+.+...++++.+||.+||+.|     |++++
T Consensus       171 ~~~~~~~~~Di~s-lG~~l~el~t~g~~p~~~~~~~~-~~~~i~~~~~~~~~~~~~~~l~~li~~~~~~~p~~Rp~~~~i  248 (257)
T cd05116         171 NYYKFSSKSDVWS-FGVLMWEAFSYGQKPYKGMKGNE-VTQMIESGERMECPQRCPPEMYDLMKLCWTYGVDERPGFAVV  248 (257)
T ss_pred             ccCCcCchhHHHH-HHHHHHHHHhCCCCCCCCCCHHH-HHHHHHCCCCCCCCCCCCHHHHHHHHHHhccCchhCcCHHHH
Confidence            7766666789999 8999999997 778876432222 22222222334445668999999999999998     77666


Q ss_pred             H
Q 013230          433 I  433 (447)
Q Consensus       433 L  433 (447)
                      .
T Consensus       249 ~  249 (257)
T cd05116         249 E  249 (257)
T ss_pred             H
Confidence            4

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.96  E-value=5e-28  Score=232.51  Aligned_cols=226  Identities=22%  Similarity=0.259  Sum_probs=178.5

Q ss_pred             CCcceEEeccccceEEEEece-----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN-----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~-----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      +|+++++||+|+||.||+|..     +|+|.+....         ...+.+.+|+.++++++|        +|    |++
T Consensus         7 ~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~---------~~~~~~~~E~~~l~~l~h--------~~----i~~   65 (260)
T cd05067           7 TLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGS---------MSPEAFLAEANLMKQLQH--------PR----LVR   65 (260)
T ss_pred             HceeeeeeccCccceEEeeecCCCceEEEEEecCCC---------CcHHHHHHHHHHHHhcCC--------cC----eee
Confidence            459999999999999999973     9999876332         123578899999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +++++.                               .+..|++|||+.+| +|.+++.      ++...+..++.|++.
T Consensus        66 ~~~~~~-------------------------------~~~~~~v~e~~~~~-~L~~~~~~~~~~~~~~~~~~~i~~~i~~  113 (260)
T cd05067          66 LYAVVT-------------------------------QEPIYIITEYMENG-SLVDFLKTPEGIKLTINKLIDMAAQIAE  113 (260)
T ss_pred             EEEEEc-------------------------------cCCcEEEEEcCCCC-CHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence            988731                               34589999999988 9988764      788999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------CEEEEecCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------DIFFLDLSQDP  355 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g~i~~~~~~~p  355 (447)
                      ||+|||+ .|++||||||+||+++.++                    .++|+|||+++.....      +......|++|
T Consensus       114 al~~LH~-~~i~H~dl~p~ni~i~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~p  172 (260)
T cd05067         114 GMAFIER-KNYIHRDLRAANILVSETL--------------------CCKIADFGLARLIEDNEYTAREGAKFPIKWTAP  172 (260)
T ss_pred             HHHHHhc-CCeecccccHHhEEEcCCC--------------------CEEEccCcceeecCCCCcccccCCcccccccCH
Confidence            9999999 9999999999999999987                    7999999999876522      11222348899


Q ss_pred             CCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CH
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SA  429 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa  429 (447)
                      |.+.+.......|+|+ +|.+.+++++ |..|+.......... .+......+.+...+.++++|+.+||..+     |+
T Consensus       173 e~~~~~~~~~~~Di~s-lG~~l~el~~~g~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~  250 (260)
T cd05067         173 EAINYGTFTIKSDVWS-FGILLTEIVTYGRIPYPGMTNPEVIQ-NLERGYRMPRPDNCPEELYELMRLCWKEKPEERPTF  250 (260)
T ss_pred             HHhccCCcCcccchHH-HHHHHHHHHhCCCCCCCCCChHHHHH-HHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCCCH
Confidence            9887766666779999 8999999997 888886543332222 22222233445567889999999999999     88


Q ss_pred             HHHHc
Q 013230          430 KEAIF  434 (447)
Q Consensus       430 ~elL~  434 (447)
                      ++++.
T Consensus       251 ~~l~~  255 (260)
T cd05067         251 EYLRS  255 (260)
T ss_pred             HHHHH
Confidence            88764

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.96  E-value=2.4e-29  Score=259.70  Aligned_cols=192  Identities=22%  Similarity=0.287  Sum_probs=157.2

Q ss_pred             cceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      ...+.||+|+||.||++++      ||||.++...       .....+...+|+++|++|+|        +|    ||++
T Consensus        16 ~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~-------~~r~~e~~~~EieilkKLnh--------~N----IVk~   76 (732)
T KOG4250|consen   16 EMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKES-------SLRPRERWCREIEILKKLNH--------PN----IVKL   76 (732)
T ss_pred             eehhhhcCCccceeeeecccccccchhHHhhhhhc-------ccchHHHHHHHHHHHHHcCc--------hh----hhhh
Confidence            5668899999999999994      9999877432       33456889999999999998        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------CCHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------LNINEARSLLVQVTA  281 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------l~~~~~~~i~~Qil~  281 (447)
                      +++-..                       ..+ .-....-.+|||||.|| +|+..+.       |++.++..++..+..
T Consensus        77 f~iee~-----------------------~~~-~~~~~~~vlvmEyC~gG-sL~~~L~~PEN~~GLpE~e~l~lL~d~~~  131 (732)
T KOG4250|consen   77 FDIEET-----------------------KFL-GLVTRLPVLVMEYCSGG-SLRKVLNSPENAYGLPESEFLDLLSDLVS  131 (732)
T ss_pred             cccCCc-----------------------ccc-CcccccceEEEeecCCC-cHHHHhcCcccccCCCHHHHHHHHHHHHH
Confidence            998211                       000 11134468999999999 9999998       999999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPEL  357 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pel  357 (447)
                      ||.|||+ +|||||||||+||++-....+                -..-||+|||.||...++.    .+.++-|.+|++
T Consensus       132 al~~LrE-n~IvHRDlKP~NIvl~~Gedg----------------q~IyKLtDfG~Arel~d~s~~~S~vGT~~YLhPel  194 (732)
T KOG4250|consen  132 ALRHLRE-NGIVHRDLKPGNIVLQIGEDG----------------QSIYKLTDFGAARELDDNSLFTSLVGTEEYLHPEL  194 (732)
T ss_pred             HHHHHHH-cCceeccCCCCcEEEeecCCC----------------ceEEeeecccccccCCCCCeeeeecCchhhcChHH
Confidence            9999999 999999999999999765410                1257999999999987763    234455889999


Q ss_pred             CC-CCCCCchHHHHHhhccCCcccccCCCCCC
Q 013230          358 FS-GPKGDKQFDTYRKMKKVTEDQWEGSFPKT  388 (447)
Q Consensus       358 f~-g~~~~~~~di~s~lg~~~~~~~~~~~p~~  388 (447)
                      +. ...+..++|.|+ +|+..++..+|.+||.
T Consensus       195 ~E~q~~y~~tVDLWS-~GvtlY~caTG~lPF~  225 (732)
T KOG4250|consen  195 YERQKKYTATVDLWS-FGVTLYECATGELPFI  225 (732)
T ss_pred             HhhccCcCceeehhh-hhhHHHHHhccCCCCC
Confidence            98 367778889999 9999999999998874

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.96  E-value=8e-28  Score=233.62  Aligned_cols=241  Identities=21%  Similarity=0.280  Sum_probs=180.2

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||.||+|++      +|+|++.....      .......+.+|+.+++++..+.|     +|    +++
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~------~~~~~~~~~~e~~~l~~l~~~~h-----~~----i~~   65 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLS------EEGIPLSTLREIALLKQLESFEH-----PN----IVR   65 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccc------cchhhhhHHHHHHHHHHhhccCC-----CC----cce
Confidence            57899999999999999983      99998875432      12223456789888888864333     66    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +++++.....                         .....+|++|||+. | +|.+++.      +++..++.++.||+.
T Consensus        66 ~~~~~~~~~~-------------------------~~~~~~~l~~e~~~-~-~l~~~l~~~~~~~l~~~~~~~~~~~i~~  118 (287)
T cd07838          66 LLDVCHGPRT-------------------------DRELKLTLVFEHVD-Q-DLATYLSKCPKPGLPPETIKDLMRQLLR  118 (287)
T ss_pred             EEEEEeeccC-------------------------CCCceeEEEehhcc-c-CHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence            9999654110                         01234899999997 4 7777654      789999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDPEL  357 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~pel  357 (447)
                      ||+|||+ .+++|+||||+||+++.++                    .+||+|||+++.....    +......|++||.
T Consensus       119 al~~LH~-~~i~h~~l~~~nili~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~PE~  177 (287)
T cd07838         119 GVDFLHS-HRIVHRDLKPQNILVTSDG--------------------QVKIADFGLARIYSFEMALTSVVVTLWYRAPEV  177 (287)
T ss_pred             HHHHHHH-CCeeeccCChhhEEEccCC--------------------CEEEeccCcceeccCCcccccccccccccChHH
Confidence            9999999 9999999999999999987                    7999999999776433    2223344789999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh----------------ccCCCC---------Cccc
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL----------------KKTFDR---------SSKD  412 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~----------------~~~~~~---------~~~~  412 (447)
                      +.+.....+.|+|+ +|.+.++++.+..|+...........+...                ...++.         ....
T Consensus       178 ~~~~~~~~~~Di~s-~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (287)
T cd07838         178 LLQSSYATPVDMWS-VGCIFAELFRRRPLFRGTSEADQLDKIFDVIGLPSEEEWPRNVSLPRSSFPSYTPRSFKSFVPEI  256 (287)
T ss_pred             hccCCCCCcchhhh-HHHHHHHHHhCCCcccCCChHHHHHHHHHHcCCCChHhcCCCcccchhhcccccccchhhhhhhh
Confidence            98877777789999 899999999987776543322222222110                000000         1235


Q ss_pred             hHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          413 ERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       413 s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                      ++++.+||.+||..|     +++|+++||||
T Consensus       257 ~~~~~~li~~~l~~dp~~Rp~~~~il~~~~~  287 (287)
T cd07838         257 CEEGLDLLKKMLTFNPHKRISAFEALQHPYF  287 (287)
T ss_pred             hHHHHHHHHHHhccCCccCCCHHHHhcCcCC
Confidence            688999999999999     99999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.96  E-value=3.6e-28  Score=237.63  Aligned_cols=229  Identities=21%  Similarity=0.254  Sum_probs=178.0

Q ss_pred             CcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCc
Q 013230          134 PENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNA  201 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~  201 (447)
                      |++.+.||+|+||.||+|.           .+|+|.+....       ..+....+.+|+.+++++ +|        +| 
T Consensus        14 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~-------~~~~~~~~~~E~~~l~~l~~h--------~~-   77 (293)
T cd05053          14 LTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDA-------TEKDLSDLVSEMEMMKMIGKH--------KN-   77 (293)
T ss_pred             eEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCC-------CHHHHHHHHHHHHHHHhhcCC--------CC-
Confidence            4899999999999999985           27888776331       122335688999999999 67        77 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------------
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------------  266 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------------  266 (447)
                         |+++++++..                              ++.+|++|||+.+| +|..++.               
T Consensus        78 ---i~~~~~~~~~------------------------------~~~~~li~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~  123 (293)
T cd05053          78 ---IINLLGVCTQ------------------------------EGPLYVVVEYAAHG-NLRDFLRARRPPGEYASPDDPR  123 (293)
T ss_pred             ---eeeEEEEEcC------------------------------CCCeEEEEEeCCCC-cHHHHHHhcCCCcccccccccc
Confidence               9999998532                              45689999999988 9988862               


Q ss_pred             -----CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeec
Q 013230          267 -----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRIN  341 (447)
Q Consensus       267 -----l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~  341 (447)
                           +++..+..++.||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+++..
T Consensus       124 ~~~~~l~~~~~~~i~~qi~~al~~LH~-~~ivH~dlkp~Nil~~~~~--------------------~~kL~Dfg~~~~~  182 (293)
T cd05053         124 PPEETLTQKDLVSFAYQVARGMEFLAS-KKCIHRDLAARNVLVTEDH--------------------VMKIADFGLARDI  182 (293)
T ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHH-CCccccccceeeEEEcCCC--------------------eEEeCcccccccc
Confidence                 7888999999999999999999 9999999999999999887                    7999999999865


Q ss_pred             CCCCE-------EEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccch
Q 013230          342 TGEDI-------FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDE  413 (447)
Q Consensus       342 ~~~g~-------i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s  413 (447)
                      .....       .....|++||.+.+...+.+.|+|+ +|.+.+++++ +..|+......... +.+......+.+...+
T Consensus       183 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s-lG~il~el~~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~  260 (293)
T cd05053         183 HHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWS-FGVLLWEIFTLGGSPYPGIPVEELF-KLLKEGYRMEKPQNCT  260 (293)
T ss_pred             ccccceeccCCCCCCccccCHHHhccCCcCcccceee-hhhHHHHHhcCCCCCCCCCCHHHHH-HHHHcCCcCCCCCCCC
Confidence            43211       0112378999887777777789999 9999999886 77777654333222 2222223334445678


Q ss_pred             HHHHHHHHHhcccc-----CHHHHHcC
Q 013230          414 RDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       414 ~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      .++.+|+.+||..|     |+.|++++
T Consensus       261 ~~~~~li~~~l~~~p~~Rps~~eil~~  287 (293)
T cd05053         261 QELYHLMRDCWHEVPSQRPTFKQLVED  287 (293)
T ss_pred             HHHHHHHHHHcccCcccCcCHHHHHHH
Confidence            89999999999999     99999865

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.96  E-value=6.3e-28  Score=231.27  Aligned_cols=227  Identities=19%  Similarity=0.234  Sum_probs=177.0

Q ss_pred             CCcceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          133 DPENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      +|++.+.||+|+||.||+|.    .+|+|.+...          ...+.+.+|+.++++++|        +|    ++++
T Consensus         7 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~k~~~~~----------~~~~~~~~e~~~l~~l~~--------~~----i~~~   64 (256)
T cd05082           7 ELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKND----------ATAQAFLAEASVMTQLRH--------SN----LVQL   64 (256)
T ss_pred             hCeeeeeecccCCCeEEEEEEcCCcEEEEEeCCC----------chHHHHHHHHHHHHhCCC--------CC----eeeE
Confidence            45999999999999999986    3888877532          123568899999999988        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAG  282 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~g  282 (447)
                      ++++..                             .++..|++|||+.+| +|.+++.      +++..+..++.||+.|
T Consensus        65 ~~~~~~-----------------------------~~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~i~~~  114 (256)
T cd05082          65 LGVIVE-----------------------------EKGGLYIVTEYMAKG-SLVDYLRSRGRSVLGGDCLLKFSLDVCEA  114 (256)
T ss_pred             EEEEEc-----------------------------CCCceEEEEECCCCC-cHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            987533                             235689999999988 9998875      6789999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC--EEEEecCCCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED--IFFLDLSQDPELFSG  360 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g--~i~~~~~~~pelf~g  360 (447)
                      |+|||+ +||+||||||+||+++.++                    .+||+|||+++......  ......|++||.+.+
T Consensus       115 l~~lH~-~~i~H~dlkp~nil~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~  173 (256)
T cd05082         115 MEYLEA-NNFVHRDLAARNVLVSEDN--------------------VAKVSDFGLTKEASSTQDTGKLPVKWTAPEALRE  173 (256)
T ss_pred             HHHHHh-CCEeccccchheEEEcCCC--------------------cEEecCCccceeccccCCCCccceeecCHHHHcc
Confidence            999999 9999999999999999887                    79999999998654321  111223789999988


Q ss_pred             CCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      ...+...|+|+ +|.+.+++++ +..|+............. .......+...++.+++++.+||..+     |+.++++
T Consensus       174 ~~~~~~~Dv~s-lG~i~~~l~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~  251 (256)
T cd05082         174 KKFSTKSDVWS-FGILLWEIYSFGRVPYPRIPLKDVVPRVE-KGYKMDAPDGCPPVVYDVMKQCWHLDAATRPSFLQLRE  251 (256)
T ss_pred             CCCCchhhhHH-HHHHHHHHHhCCCCCCCCCCHHHHHHHHh-cCCCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence            77777779999 8999999986 777776543333222221 11122234567899999999999998     8888864

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.96  E-value=5.8e-28  Score=232.81  Aligned_cols=225  Identities=20%  Similarity=0.245  Sum_probs=176.2

Q ss_pred             CcceEEeccccceEEEEece-----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          134 PENIVKVGEGTFGEAFLAGN-----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~-----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      |++.++||+|+||.||+|++     +|+|++.....         ..+.+.+|+.+++.++|        +|    |+++
T Consensus         8 ~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~---------~~~~~~~E~~~l~~l~~--------~~----i~~~   66 (262)
T cd05071           8 LRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---------SPEAFLQEAQVMKKLRH--------EK----LVQL   66 (262)
T ss_pred             eeEeeecCCCCCCcEEEEEecCCceEEEEecccCcc---------CHHHHHHHHHHHHhCCC--------CC----cceE
Confidence            49999999999999999973     88998764321         23567899999999988        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAG  282 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~g  282 (447)
                      ++.+.                               +...|+||||+.+| +|.+++.      +++..+..++.|++.|
T Consensus        67 ~~~~~-------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~l~~a  114 (262)
T cd05071          67 YAVVS-------------------------------EEPIYIVTEYMSKG-SLLDFLKGEMGKYLRLPQLVDMAAQIASG  114 (262)
T ss_pred             EEEEC-------------------------------CCCcEEEEEcCCCC-cHHHHHhhccccCCCHHHHHHHHHHHHHH
Confidence            87631                               34579999999988 9998875      6889999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE------EEEecCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI------FFLDLSQDPE  356 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~------i~~~~~~~pe  356 (447)
                      |+|||+ .+|+||||||+|||++.++                    .+||+|||+++.......      .....|++||
T Consensus       115 L~~lH~-~~i~H~dl~p~Nill~~~~--------------------~~~L~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE  173 (262)
T cd05071         115 MAYVER-MNYVHRDLRAANILVGENL--------------------VCKVADFGLARLIEDNEYTARQGAKFPIKWTAPE  173 (262)
T ss_pred             HHHHHH-CCccccccCcccEEEcCCC--------------------cEEeccCCceeeccccccccccCCcccceecCHh
Confidence            999999 9999999999999999887                    799999999986544322      1122378999


Q ss_pred             CCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      ...+...+...|+|+ +|.+.+++++ +..|+...........+. .....+.....+..+.+|+.+||+.|     |++
T Consensus       174 ~~~~~~~~~~~Dvws-lG~~l~ellt~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~  251 (262)
T cd05071         174 AALYGRFTIKSDVWS-FGILLTELTTKGRVPYPGMVNREVLDQVE-RGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE  251 (262)
T ss_pred             HhccCCCCchhhHHH-HHHHHHHHHcCCCCCCCCCChHHHHHHHh-cCCCCCCccccCHHHHHHHHHHccCCcccCCCHH
Confidence            887766777789999 8999999998 667775543333222222 12233444567899999999999998     787


Q ss_pred             HHHc
Q 013230          431 EAIF  434 (447)
Q Consensus       431 elL~  434 (447)
                      +++.
T Consensus       252 ~~~~  255 (262)
T cd05071         252 YLQA  255 (262)
T ss_pred             HHHH
Confidence            7653

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.96  E-value=6.6e-28  Score=236.54  Aligned_cols=242  Identities=22%  Similarity=0.309  Sum_probs=178.0

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||.||+|..      ||+|++.....      .......+.+|+.+++.++|        ||    |++
T Consensus         9 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~------~~~~~~~~~~e~~~~~~l~h--------~~----i~~   70 (302)
T cd07864           9 FDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNE------KEGFPITAIREIKILRQLNH--------RN----IVN   70 (302)
T ss_pred             hheeeeecccCCEEEEEEEECCCCcEEEEEEEeeccc------ccCchHHHHHHHHHHHhCCC--------CC----eee
Confidence            49999999999999999973      89998875421      22233566789999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCC-CCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPK-EFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      +++++....                     +... ..+...+|+||||+.+  +|..++.     +++..++.++.||+.
T Consensus        71 ~~~~~~~~~---------------------~~~~~~~~~~~~~lv~e~~~~--~l~~~l~~~~~~~~~~~~~~i~~qi~~  127 (302)
T cd07864          71 LKEIVTDKQ---------------------DALDFKKDKGAFYLVFEYMDH--DLMGLLESGLVHFSEDHIKSFMKQLLE  127 (302)
T ss_pred             eeheecCcc---------------------hhhhccccCCcEEEEEcccCc--cHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence            998854211                     0000 1123479999999984  5555443     899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------EEEEecCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------IFFLDLSQDP  355 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------~i~~~~~~~p  355 (447)
                      ||+|||+ .||+||||||+||+++.++                    .+||+|||+++......      ......|++|
T Consensus       128 aL~~LH~-~~i~H~dl~p~nili~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~P  186 (302)
T cd07864         128 GLNYCHK-KNFLHRDIKCSNILLNNKG--------------------QIKLADFGLARLYNSEESRPYTNKVITLWYRPP  186 (302)
T ss_pred             HHHHHHh-CCeecCCCCHHHEEECCCC--------------------cEEeCcccccccccCCcccccccceeccCccCh
Confidence            9999999 9999999999999999887                    79999999998654322      1223347889


Q ss_pred             CCCCCCC-CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh--cc---CC-----------------------
Q 013230          356 ELFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL--KK---TF-----------------------  406 (447)
Q Consensus       356 elf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~--~~---~~-----------------------  406 (447)
                      |.+.+.. .....|+|+ +|.+.++++.|..|+........+......  ..   .+                       
T Consensus       187 E~~~~~~~~~~~~Di~s-lG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (302)
T cd07864         187 ELLLGEERYGPAIDVWS-CGCILGELFTKKPIFQANQELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLR  265 (302)
T ss_pred             HHhcCCCCCCchhHHHH-HHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhcccccccccccccccccccccchh
Confidence            9886533 355669999 899999999998887643322222111100  00   00                       


Q ss_pred             CCCccchHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          407 DRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       407 ~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                      ......+..+++|+.+||..|     |+++++.||||
T Consensus       266 ~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~~~~  302 (302)
T cd07864         266 EEFSFIPTPALDLLDHMLTLDPSKRCTAEEALNSPWL  302 (302)
T ss_pred             hhcCCCCHHHHHHHHHHccCChhhCCCHHHHhcCCCC
Confidence            001235789999999999999     99999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.96  E-value=7.9e-28  Score=230.37  Aligned_cols=227  Identities=19%  Similarity=0.250  Sum_probs=178.8

Q ss_pred             CCcceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          133 DPENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      +|++.+.||.|+||.||+|.    .+|+|.+....         ....++.+|+.+++.++|        +|    |+++
T Consensus         7 ~~~~~~~ig~g~~g~v~~~~~~~~~v~iK~~~~~~---------~~~~~~~~e~~~l~~l~~--------~~----i~~~   65 (256)
T cd05039           7 ELKLGATIGKGEFGDVMLGDYRGQKVAVKCLKDDS---------TAAQAFLAEASVMTTLRH--------PN----LVQL   65 (256)
T ss_pred             hccceeeeecCCCceEEEEEecCcEEEEEEeccch---------hHHHHHHHHHHHHHhcCC--------cc----eeee
Confidence            46899999999999999987    49999886331         134678999999999998        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAG  282 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~g  282 (447)
                      ++++.                              ..+..|+||||+.+| +|.+++.      +++..++.++.|++.|
T Consensus        66 ~~~~~------------------------------~~~~~~~v~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~qi~~~  114 (256)
T cd05039          66 LGVVL------------------------------QGNPLYIVTEYMAKG-SLVDYLRSRGRAVITLAQQLGFALDVCEG  114 (256)
T ss_pred             EEEEc------------------------------CCCCeEEEEEecCCC-cHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            99843                              256799999999987 9999874      7899999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE--EEEecCCCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI--FFLDLSQDPELFSG  360 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~--i~~~~~~~pelf~g  360 (447)
                      |.|||+ .|++||||||+||+++.++                    .+||+|||.++.......  .....|++||.+.+
T Consensus       115 l~~lh~-~~i~H~di~p~Nili~~~~--------------------~~~l~d~g~~~~~~~~~~~~~~~~~~~ape~~~~  173 (256)
T cd05039         115 MEYLEE-KNFVHRDLAARNVLVSEDL--------------------VAKVSDFGLAKEASQGQDSGKLPVKWTAPEALRE  173 (256)
T ss_pred             HHHHHh-CCccchhcccceEEEeCCC--------------------CEEEcccccccccccccccCCCcccccCchhhcC
Confidence            999999 9999999999999999887                    799999999987643321  11223788998877


Q ss_pred             CCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      .....+.|+|+ +|.+.++++. +..|+......... ..+........+...++++.+||.+||..+     |++|+++
T Consensus       174 ~~~~~~~Di~s-lG~il~~l~~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  251 (256)
T cd05039         174 KKFSTKSDVWS-FGILLWEIYSFGRVPYPRIPLKDVV-PHVEKGYRMEAPEGCPPEVYKVMKDCWELDPAKRPTFKQLRE  251 (256)
T ss_pred             CcCCcHHHHHH-HHHHHHHHHhcCCCCCCCCCHHHHH-HHHhcCCCCCCccCCCHHHHHHHHHHhccChhhCcCHHHHHH
Confidence            66667779999 9999988886 77777554332222 222111122334557899999999999998     8888875

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.96  E-value=2.9e-28  Score=233.88  Aligned_cols=228  Identities=20%  Similarity=0.206  Sum_probs=179.0

Q ss_pred             CCcceEEeccccceEEEEece-----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN-----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~-----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      +|++.++||.|+||.||+|+.     +|+|++....        ......+.+|+.+++.++|        +|    |++
T Consensus         7 ~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~--------~~~~~~~~~e~~~l~~l~~--------~~----i~~   66 (261)
T cd05148           7 EFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDD--------LLKQQDFQKEVQALKRLRH--------KH----LIS   66 (261)
T ss_pred             HHHHhhhhccCCCccEEEeEecCCCcEEEEeccccc--------hhhHHHHHHHHHHHhcCCC--------cc----hhh
Confidence            358899999999999999974     8888876432        2234568899999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +++++..                              ....|+||||+.+| +|.+++.      ++...++.++.||+.
T Consensus        67 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~i~~  115 (261)
T cd05148          67 LFAVCSV------------------------------GEPVYIITELMEKG-SLLAFLRSPEGQVLPVASLIDMACQVAE  115 (261)
T ss_pred             eeeeEec------------------------------CCCeEEEEeecccC-CHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence            9888432                              46689999999988 9999875      789999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE-----EEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF-----FLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i-----~~~~~~~pe  356 (447)
                      ||+|||+ .||+||||||+|||++.++                    .+||+|||++.........     ....|++||
T Consensus       116 al~~lH~-~~i~h~dl~~~nilv~~~~--------------------~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~PE  174 (261)
T cd05148         116 GMAYLEE-QNSIHRDLAARNILVGEDL--------------------VCKVADFGLARLIKEDVYLSSDKKIPYKWTAPE  174 (261)
T ss_pred             HHHHHHH-CCeeccccCcceEEEcCCc--------------------eEEEccccchhhcCCccccccCCCCceEecCHH
Confidence            9999999 9999999999999999987                    7999999999775443211     112367898


Q ss_pred             CCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      .+.+.....+.|+|+ +|.+.+++++ +..|+............. .....+.+...++++.+++.+||+.|     |++
T Consensus       175 ~~~~~~~~~~~Diws-lG~~l~~l~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~  252 (261)
T cd05148         175 AASHGTFSTKSDVWS-FGILLYEMFTYGQVPYPGMNNHEVYDQIT-AGYRMPCPAKCPQEIYKIMLECWAAEPEDRPSFK  252 (261)
T ss_pred             HHccCCCCchhhHHH-HHHHHHHHHcCCCCCCCcCCHHHHHHHHH-hCCcCCCCCCCCHHHHHHHHHHcCCCchhCcCHH
Confidence            887766667779999 8999999997 677875433222222222 22234445678899999999999998     888


Q ss_pred             HHHc
Q 013230          431 EAIF  434 (447)
Q Consensus       431 elL~  434 (447)
                      ++++
T Consensus       253 ~l~~  256 (261)
T cd05148         253 ALRE  256 (261)
T ss_pred             HHHH
Confidence            8764

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.96  E-value=1.1e-27  Score=230.33  Aligned_cols=225  Identities=22%  Similarity=0.248  Sum_probs=176.2

Q ss_pred             CcceEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          134 PENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      |++.++||+|+||.||+|.     .+|+|.+....         ...+.+.+|+.+++.++|        +|    ++++
T Consensus         8 ~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~---------~~~~~~~~E~~~l~~l~h--------~~----i~~~   66 (260)
T cd05069           8 LRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGT---------MMPEAFLQEAQIMKKLRH--------DK----LVPL   66 (260)
T ss_pred             eeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCC---------ccHHHHHHHHHHHHhCCC--------CC----eeeE
Confidence            4889999999999999997     38888765321         123567899999999998        88    9998


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAG  282 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~g  282 (447)
                      ++++.                               .+..|++|||+.+| +|.+++.      +++..+..++.|++.|
T Consensus        67 ~~~~~-------------------------------~~~~~~v~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~l~~a  114 (260)
T cd05069          67 YAVVS-------------------------------EEPIYIVTEFMGKG-SLLDFLKEGDGKYLKLPQLVDMAAQIADG  114 (260)
T ss_pred             EEEEc-------------------------------CCCcEEEEEcCCCC-CHHHHHhhCCCCCCCHHHHHHHHHHHHHH
Confidence            87731                               34579999999988 9988875      6888999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE------EEEecCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI------FFLDLSQDPE  356 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~------i~~~~~~~pe  356 (447)
                      |+|||+ .|++||||||+||+++.++                    .++|+|||+++.......      .....|++||
T Consensus       115 l~~lH~-~~i~H~dl~~~Nill~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe  173 (260)
T cd05069         115 MAYIER-MNYIHRDLRAANILVGDNL--------------------VCKIADFGLARLIEDNEYTARQGAKFPIKWTAPE  173 (260)
T ss_pred             HHHHHh-CCEeecccCcceEEEcCCC--------------------eEEECCCccceEccCCcccccCCCccchhhCCHH
Confidence            999999 9999999999999999887                    799999999987544322      1223478899


Q ss_pred             CCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      ...+...+...|+|+ +|.+.+++.+ +..|+............. .....+.+...+..+++|+++||..|     |++
T Consensus       174 ~~~~~~~~~~~Di~s-lG~~l~el~t~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~  251 (260)
T cd05069         174 AALYGRFTIKSDVWS-FGILLTELVTKGRVPYPGMVNREVLEQVE-RGYRMPCPQGCPESLHELMKLCWKKDPDERPTFE  251 (260)
T ss_pred             HhccCCcChHHHHHH-HHHHHHHHHhCCCCCCCCCCHHHHHHHHH-cCCCCCCCcccCHHHHHHHHHHccCCcccCcCHH
Confidence            887766777789999 8999999987 778876543333322222 22233344567899999999999998     787


Q ss_pred             HHHc
Q 013230          431 EAIF  434 (447)
Q Consensus       431 elL~  434 (447)
                      ++++
T Consensus       252 ~i~~  255 (260)
T cd05069         252 YIQS  255 (260)
T ss_pred             HHHH
Confidence            7753

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.96  E-value=5.1e-28  Score=237.40  Aligned_cols=239  Identities=18%  Similarity=0.225  Sum_probs=178.9

Q ss_pred             CCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhcc-ccccCCCCCCCcccc
Q 013230          132 SDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN-HLRRNEGDTLNACTT  204 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~n~~~~  204 (447)
                      .+|++.+.||+|+||.||+|..      +|+|.+.....       ......+.+|+.++.++. |        +|    
T Consensus        15 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~-------~~~~~~~~~e~~~~~~~~~~--------~~----   75 (296)
T cd06618          15 NDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGN-------KEENKRILMDLDVVLKSHDC--------PY----   75 (296)
T ss_pred             chheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCC-------hHHHHHHHHHHHHHHhccCC--------Cc----
Confidence            4569999999999999999873      89998864321       122345667777666654 4        56    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQV  279 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qi  279 (447)
                      |+++++++..                              ....|+||||+. | .|..++.     +++..+..++.||
T Consensus        76 i~~~~~~~~~------------------------------~~~~~~v~e~~~-~-~l~~l~~~~~~~l~~~~~~~i~~~i  123 (296)
T cd06618          76 IVKCYGYFIT------------------------------DSDVFICMELMS-T-CLDKLLKRIQGPIPEDILGKMTVAI  123 (296)
T ss_pred             hHhhheeeec------------------------------CCeEEEEeeccC-c-CHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            9999998543                              556999999985 4 6666554     7899999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDP  355 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~p  355 (447)
                      +.||+|||+.+||+||||+|+||+++.++                    .+||+|||++.......    ......|++|
T Consensus       124 ~~~l~~lH~~~~i~H~dl~p~nill~~~~--------------------~~kL~dfg~~~~~~~~~~~~~~~~~~~y~aP  183 (296)
T cd06618         124 VKALHYLKEKHGVIHRDVKPSNILLDASG--------------------NVKLCDFGISGRLVDSKAKTRSAGCAAYMAP  183 (296)
T ss_pred             HHHHHHHHhhCCEecCCCcHHHEEEcCCC--------------------CEEECccccchhccCCCcccCCCCCccccCH
Confidence            99999999746999999999999999876                    79999999987653321    1122347899


Q ss_pred             CCCCCCC----CCchHHHHHhhccCCcccccCCCCCChhHH-HHHHHHHHhhc-cCCCCCccchHHHHHHHHHhcccc--
Q 013230          356 ELFSGPK----GDKQFDTYRKMKKVTEDQWEGSFPKTNVLW-LVYLVDMLLLK-KTFDRSSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       356 elf~g~~----~~~~~di~s~lg~~~~~~~~~~~p~~~~~~-~~~~~~~l~~~-~~~~~~~~~s~~l~dLl~~mL~~d--  427 (447)
                      |.+.+..    .+.+.|+|+ +|.+.++++.|..|+..... ...+...+... ...+.....+.++++|+.+||..|  
T Consensus       184 E~~~~~~~~~~~~~~~Di~s-lG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~  262 (296)
T cd06618         184 ERIDPPDPNPKYDIRADVWS-LGISLVELATGQFPYKNCKTEFEVLTKILQEEPPSLPPNEGFSPDFCSFVDLCLTKDHR  262 (296)
T ss_pred             hhcCCCCCccccccchhHHH-HHHHHHHHHhCCCCCCcchhHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHccCChh
Confidence            9887653    445669999 99999999999999865211 12222322221 223333347889999999999999  


Q ss_pred             ---CHHHHHcCCCCCCCC
Q 013230          428 ---SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 ---sa~elL~HPff~~~~  442 (447)
                         |++++++||||+...
T Consensus       263 ~Rp~~~~il~~~~~~~~~  280 (296)
T cd06618         263 KRPKYRELLQHPFIRRYE  280 (296)
T ss_pred             hCCCHHHHhcChhhhccc
Confidence               999999999998653

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.96  E-value=6.3e-28  Score=236.73  Aligned_cols=229  Identities=19%  Similarity=0.200  Sum_probs=172.3

Q ss_pred             CcceEEeccccceEEEEec----------------------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhcccc
Q 013230          134 PENIVKVGEGTFGEAFLAG----------------------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHL  191 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~----------------------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~  191 (447)
                      |++.++||+|+||.||+|+                      .+|+|++....       .......+.+|+.+++.++| 
T Consensus         7 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~-------~~~~~~~~~~E~~~l~~l~~-   78 (296)
T cd05095           7 LTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDA-------NKNARNDFLKEIKIMSRLKD-   78 (296)
T ss_pred             ceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccC-------CHHHHHHHHHHHHHHHhCCC-
Confidence            5999999999999999874                      37888775331       22234678899999999988 


Q ss_pred             ccCCCCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----
Q 013230          192 RRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----  266 (447)
Q Consensus       192 ~~~~~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----  266 (447)
                             +|    |+++++++..                              .+..|+||||+.+| +|.+++.     
T Consensus        79 -------~~----i~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~  116 (296)
T cd05095          79 -------PN----IIRLLAVCIT------------------------------SDPLCMITEYMENG-DLNQFLSRHEPQ  116 (296)
T ss_pred             -------CC----cceEEEEEec------------------------------CCccEEEEEeCCCC-cHHHHHHhcCcc
Confidence                   88    9999998543                              45689999999988 9988864     


Q ss_pred             ----------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeecc
Q 013230          267 ----------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFT  336 (447)
Q Consensus       267 ----------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG  336 (447)
                                +++..+..++.||+.||+|||+ +||+||||||+|||++.++                    .++|+|||
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~-~~i~H~dlkp~Nili~~~~--------------------~~~l~dfg  175 (296)
T cd05095         117 EAAEKADVVTISYSTLIFMATQIASGMKYLSS-LNFVHRDLATRNCLVGKNY--------------------TIKIADFG  175 (296)
T ss_pred             cccccccccccCHHHHHHHHHHHHHHHHHHHH-CCeecccCChheEEEcCCC--------------------CEEeccCc
Confidence                      4456899999999999999999 9999999999999999876                    79999999


Q ss_pred             ceeecCCCCE-------EEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc--CCCCCChhHHHHHHHHH---Hh---
Q 013230          337 LSRINTGEDI-------FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE--GSFPKTNVLWLVYLVDM---LL---  401 (447)
Q Consensus       337 la~~~~~~g~-------i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~--~~~p~~~~~~~~~~~~~---l~---  401 (447)
                      +++.......       .....|++||...+.....+.|+|+ +|.+.+++++  +..|+............   ..   
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwS-lG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  254 (296)
T cd05095         176 MSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWA-FGVTLWEILTLCKEQPYSQLSDEQVIENTGEFFRDQG  254 (296)
T ss_pred             ccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhH-HHHHHHHHHHhCCCCCccccChHHHHHHHHHHHhhcc
Confidence            9986533211       1112367787666656667779999 9999999987  55777543222221111   10   


Q ss_pred             hccCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          402 LKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       402 ~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      ....++.+...++.+++|+.+||+.|     |+.++++
T Consensus       255 ~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~  292 (296)
T cd05095         255 RQVYLPKPALCPDSLYKLMLSCWRRNAKERPSFQEIHA  292 (296)
T ss_pred             ccccCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence            11223444567789999999999998     8888753

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.96  E-value=4.9e-28  Score=234.60  Aligned_cols=233  Identities=21%  Similarity=0.306  Sum_probs=180.1

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|++|.||+|.+      +|+|.+.....      .+.....+.+|+.+++.++|        +|    |++
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~------~~~~~~~~~~e~~~l~~l~~--------~~----i~~   62 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFE------SEGIPKTALREIKLLKELNH--------PN----IIK   62 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccc------cchhHHHHHHHHHHHHHhcC--------CC----cch
Confidence            47889999999999999973      89998764421      22344678899999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++.                              .++..|++|||+. | +|.+++.     +++..+..++.||+.|
T Consensus        63 ~~~~~~------------------------------~~~~~~~v~e~~~-~-~l~~~l~~~~~~~~~~~~~~~~~~i~~~  110 (283)
T cd05118          63 LLDVFR------------------------------HKGDLYLVFEFMD-T-DLYKLIKDRQRGLPESLIKSYLYQLLQG  110 (283)
T ss_pred             HHHhhc------------------------------cCCCEEEEEeccC-C-CHHHHHHhhcccCCHHHHHHHHHHHHHH
Confidence            998843                              2567999999997 4 7777664     7899999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pel  357 (447)
                      |.|||+ .||+|+||||+||+++.++                    .+||+|||.+.......     .+....|++||.
T Consensus       111 l~~LH~-~~i~H~dl~p~nili~~~~--------------------~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~PE~  169 (283)
T cd05118         111 LAFCHS-HGILHRDLKPENLLINTEG--------------------VLKLADFGLARSFGSPVRPYTHYVVTRWYRAPEL  169 (283)
T ss_pred             HHHHHH-CCeeecCcCHHHEEECCCC--------------------cEEEeeeeeeEecCCCcccccCccCcccccCcHH
Confidence            999999 9999999999999999887                    79999999998765442     223345789998


Q ss_pred             CCCC-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh--c-----------------cCCC---------C
Q 013230          358 FSGP-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL--K-----------------KTFD---------R  408 (447)
Q Consensus       358 f~g~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~--~-----------------~~~~---------~  408 (447)
                      +.+. ..+.+.|+|+ +|.+.+++++|..|+........+......  .                 ..++         .
T Consensus       170 ~~~~~~~~~~~Di~s-lG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (283)
T cd05118         170 LLGDKGYSTPVDIWS-VGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKL  248 (283)
T ss_pred             HhcCCCCCchhHHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCchHhcccchhhhhhhhhhhccccccCHHHh
Confidence            8775 4556679999 899999999998777543222211111100  0                 0000         0


Q ss_pred             CccchHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          409 SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       409 ~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                      ....+.++++||.+||..|     ++.++++||||
T Consensus       249 ~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~~~~~  283 (283)
T cd05118         249 FPNASPQALDLLSQMLHYDPHKRITAEQALAHPYF  283 (283)
T ss_pred             hhhhCHHHHHHHHHHhccCcccCcCHHHHhhCCCC
Confidence            1236789999999999999     99999999997

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.96  E-value=5.5e-28  Score=236.30  Aligned_cols=229  Identities=20%  Similarity=0.202  Sum_probs=174.9

Q ss_pred             CCcceEEeccccceEEEEece-----------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN-----------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA  201 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~-----------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~  201 (447)
                      +|++.+.||+|+||.||+|..           +|+|.+....       .......+.+|+.+++.++|        || 
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------~~-   64 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENA-------SSSELRDLLSEFNLLKQVNH--------PH-   64 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCC-------CHHHHHHHHHHHHHHhhCCC--------CC-
Confidence            358889999999999999863           6666654321       12234678899999999988        88 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------------
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------------  266 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------------  266 (447)
                         |+++++.+..                              ++..|++|||+.+| +|.+++.               
T Consensus        65 ---iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~  110 (290)
T cd05045          65 ---VIKLYGACSQ------------------------------DGPLLLIVEYAKYG-SLRSFLRESRKVGPSYLGSDGN  110 (290)
T ss_pred             ---EeeEEEEEec------------------------------CCCcEEEEEecCCC-CHHHHHHhcCCccccccccccc
Confidence               9999988532                              45689999999988 8988753               


Q ss_pred             -------------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEe
Q 013230          267 -------------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTII  333 (447)
Q Consensus       267 -------------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~  333 (447)
                                   ++...+..++.|++.||.|||+ .||+||||||+|||++.++                    .+||+
T Consensus       111 ~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~-~~ivH~dikp~nill~~~~--------------------~~kl~  169 (290)
T cd05045         111 RNSSYLDNPDERALTMGDLISFAWQISRGMQYLAE-MKLVHRDLAARNVLVAEGR--------------------KMKIS  169 (290)
T ss_pred             cccccccCccccccCHHHHHHHHHHHHHHHHHHHH-CCeehhhhhhheEEEcCCC--------------------cEEec
Confidence                         5678889999999999999999 9999999999999998876                    79999


Q ss_pred             eccceeecCCCC-------EEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccC
Q 013230          334 DFTLSRINTGED-------IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKT  405 (447)
Q Consensus       334 DFGla~~~~~~g-------~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~  405 (447)
                      |||+++.....+       ......|++||.+.+...+.+.|||+ +|.+.+++++ +..|+....... +...+.....
T Consensus       170 dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~s-lG~~l~el~t~g~~p~~~~~~~~-~~~~~~~~~~  247 (290)
T cd05045         170 DFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWS-FGVLLWEIVTLGGNPYPGIAPER-LFNLLKTGYR  247 (290)
T ss_pred             cccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHH-HHHHHHHHHhcCCCCCCCCCHHH-HHHHHhCCCC
Confidence            999997643221       11112378899887766777789999 8999999987 777775432222 2222222223


Q ss_pred             CCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          406 FDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       406 ~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      .+.+...+.++++|+.+||..|     |++++++
T Consensus       248 ~~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~  281 (290)
T cd05045         248 MERPENCSEEMYNLMLTCWKQEPDKRPTFADISK  281 (290)
T ss_pred             CCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHH
Confidence            4445668899999999999999     8888764

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.96  E-value=4.6e-28  Score=242.19  Aligned_cols=229  Identities=20%  Similarity=0.252  Sum_probs=177.2

Q ss_pred             CcceEEeccccceEEEEec-------------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCC
Q 013230          134 PENIVKVGEGTFGEAFLAG-------------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTL  199 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-------------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~  199 (447)
                      |++.+.||+|+||.||+|+             .+|+|.+...       ........+.+|+.+++++ +|        +
T Consensus        14 ~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~-------~~~~~~~~~~~E~~~l~~l~~h--------~   78 (334)
T cd05100          14 LTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDD-------ATDKDLSDLVSEMEMMKMIGKH--------K   78 (334)
T ss_pred             eeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccc-------cCHHHHHHHHHHHHHHHhhcCC--------C
Confidence            4899999999999999995             3788876532       1222346788999999999 56        7


Q ss_pred             CcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------------
Q 013230          200 NACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------------  266 (447)
Q Consensus       200 n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------------  266 (447)
                      |    |+++++++..                              ++.+|++|||+.+| +|.+++.             
T Consensus        79 ~----iv~~~~~~~~------------------------------~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~  123 (334)
T cd05100          79 N----IINLLGACTQ------------------------------DGPLYVLVEYASKG-NLREYLRARRPPGMDYSFDT  123 (334)
T ss_pred             C----eeeeeEEEcc------------------------------CCceEEEEecCCCC-cHHHHHHhcCCccccccccc
Confidence            7    9999998532                              45689999999988 9988763             


Q ss_pred             -------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeecccee
Q 013230          267 -------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSR  339 (447)
Q Consensus       267 -------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~  339 (447)
                             ++...+..++.||+.||+|||+ +||+||||||+|||++.++                    .+||+|||+++
T Consensus       124 ~~~~~~~l~~~~~~~~~~qi~~al~~LH~-~givH~dlkp~Nill~~~~--------------------~~kL~Dfg~~~  182 (334)
T cd05100         124 CKLPEEQLTFKDLVSCAYQVARGMEYLAS-QKCIHRDLAARNVLVTEDN--------------------VMKIADFGLAR  182 (334)
T ss_pred             ccCccccCCHHHHHHHHHHHHHHHHHHHH-CCeeccccccceEEEcCCC--------------------cEEECCcccce
Confidence                   5667888899999999999999 9999999999999999887                    79999999998


Q ss_pred             ecCCCCE-------EEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCcc
Q 013230          340 INTGEDI-------FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSK  411 (447)
Q Consensus       340 ~~~~~g~-------i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~  411 (447)
                      .......       .....|++||.+.+.....+.|+|+ +|.+.++++. +..|+.......... .+......+.+..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s-lG~il~el~~~g~~p~~~~~~~~~~~-~~~~~~~~~~~~~  260 (334)
T cd05100         183 DVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWS-FGVLLWEIFTLGGSPYPGIPVEELFK-LLKEGHRMDKPAN  260 (334)
T ss_pred             ecccccccccccCCCcCceEcCHHHhccCCcCchhhhHH-HHHHHHHHHhcCCCCCCCCCHHHHHH-HHHcCCCCCCCCC
Confidence            6543210       1112378999998877777789999 9999999987 667765543333222 2222233344456


Q ss_pred             chHHHHHHHHHhcccc-----CHHHHHcC
Q 013230          412 DERDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       412 ~s~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      .+.++.+|+.+||..+     |+.|++++
T Consensus       261 ~~~~l~~li~~cl~~~p~~Rps~~ell~~  289 (334)
T cd05100         261 CTHELYMIMRECWHAVPSQRPTFKQLVED  289 (334)
T ss_pred             CCHHHHHHHHHHcccChhhCcCHHHHHHH
Confidence            7889999999999988     89988865

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.96  E-value=5.1e-28  Score=235.88  Aligned_cols=234  Identities=21%  Similarity=0.303  Sum_probs=186.8

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+..+.||+|+||.||+|..      +|+|++.....         ..+.+.+|+.+++.++|        +|    +++
T Consensus        21 ~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~---------~~~~~~~e~~~l~~l~~--------~~----i~~   79 (286)
T cd06614          21 YKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ---------NKELIINEILIMKDCKH--------PN----IVD   79 (286)
T ss_pred             chHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch---------hHHHHHHHHHHHHHCCC--------CC----eeE
Confidence            48889999999999999874      89998874321         34668899999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++.+..                              .+..|++|||+.+| +|.+++.     ++...+..++.|++.|
T Consensus        80 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~l~~~~~~~i~~~i~~~  128 (286)
T cd06614          80 YYDSYLV------------------------------GDELWVVMEYMDGG-SLTDIITQNFVRMNEPQIAYVCREVLQG  128 (286)
T ss_pred             EEEEEEE------------------------------CCEEEEEEeccCCC-cHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence            9998654                              56799999999977 9999876     7899999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pel  357 (447)
                      |+|||+ .||+|+||||+||+++.++                    .++|+|||++.......     ......|++||.
T Consensus       129 L~~lH~-~gi~H~dl~p~ni~i~~~~--------------------~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~PE~  187 (286)
T cd06614         129 LEYLHS-QNVIHRDIKSDNILLSKDG--------------------SVKLADFGFAAQLTKEKSKRNSVVGTPYWMAPEV  187 (286)
T ss_pred             HHHHHh-CCeeeCCCChhhEEEcCCC--------------------CEEECccchhhhhccchhhhccccCCcccCCHhH
Confidence            999999 9999999999999999887                    79999999887544321     111233788998


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc-cCCCCCccchHHHHHHHHHhcccc-----CHHH
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK-KTFDRSSKDERDLRSLKKRLDKYN-----SAKE  431 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~-~~~~~~~~~s~~l~dLl~~mL~~d-----sa~e  431 (447)
                      +.+...+.+.|+|+ +|.+.+++++|..|+...........+.... ........++.++++||++||..+     |+.+
T Consensus       188 ~~~~~~~~~~Dv~s-lGvil~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~  266 (286)
T cd06614         188 IKRKDYGPKVDIWS-LGIMCIEMAEGEPPYLREPPLRALFLITTKGIPPLKNPEKWSPEFKDFLNKCLVKDPEKRPSAEE  266 (286)
T ss_pred             hcCCCCCCccccHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCcchhhCCHHHHHHHHHHhccChhhCcCHHH
Confidence            88776777789999 9999999999999987543322222222111 112222337889999999999999     9999


Q ss_pred             HHcCCCCCCC
Q 013230          432 AIFDPFFSDL  441 (447)
Q Consensus       432 lL~HPff~~~  441 (447)
                      ++.||||+..
T Consensus       267 il~~~~~~~~  276 (286)
T cd06614         267 LLQHPFLKKA  276 (286)
T ss_pred             HhhChHhhcc
Confidence            9999999874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.96  E-value=3e-28  Score=234.58  Aligned_cols=230  Identities=19%  Similarity=0.187  Sum_probs=177.9

Q ss_pred             CCcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||+|+||.||+|+      .+|+|.+.....     ........+.+|+.+++.++|        +|    |+
T Consensus         3 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~-----~~~~~~~~~~~e~~~l~~~~h--------~~----i~   65 (267)
T cd08229           3 NFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDL-----MDAKARADCIKEIDLLKQLNH--------PN----VI   65 (267)
T ss_pred             hhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhh-----hhHHHHHHHHHHHHHHHHccC--------Cc----hh
Confidence            45889999999999999997      389998764322     222334678899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQ  278 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Q  278 (447)
                      ++++++..                              ++..|++|||+.+| +|.+++.        +++..++.++.|
T Consensus        66 ~~~~~~~~------------------------------~~~~~~v~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~~~  114 (267)
T cd08229          66 KYYASFIE------------------------------DNELNIVLELADAG-DLSRMIKHFKKQKRLIPEKTVWKYFVQ  114 (267)
T ss_pred             hhhheeEe------------------------------CCeEEEEEEecCCC-CHHHHHHHhhccCCCCCHHHHHHHHHH
Confidence            99998654                              56699999999987 8888764        788999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----EEEecCC
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----FFLDLSQ  353 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i~~~~~~  353 (447)
                      |+.||+|||+ .|++|+||||+||+++.++                    .++|+|||+++.......     .....|+
T Consensus       115 i~~~l~~LH~-~~i~H~dl~p~nili~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~  173 (267)
T cd08229         115 LCSALEHMHS-RRVMHRDIKPANVFITATG--------------------VVKLGDLGLGRFFSSKTTAAHSLVGTPYYM  173 (267)
T ss_pred             HHHHHHHHHH-CCeecCCCCHHHEEEcCCC--------------------CEEECcchhhhccccCCcccccccCCcCcc
Confidence            9999999999 9999999999999999887                    799999999876543321     2223478


Q ss_pred             CCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHH-HHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc---
Q 013230          354 DPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWL-VYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN---  427 (447)
Q Consensus       354 ~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~-~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d---  427 (447)
                      +||.+.+.....+.|+|+ +|.+.++++.+..|+...... ....+.+. ...++.  ....++++++|+.+||..|   
T Consensus       174 ape~~~~~~~~~~~Dv~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  251 (267)
T cd08229         174 SPERIHENGYNFKSDIWS-LGCLLYEMAALQSPFYGDKMNLYSLCKKIE-QCDYPPLPSDHYSEELRQLVNMCINPDPEK  251 (267)
T ss_pred             CHHHhcCCCccchhhHHH-HHHHHHHHHhCCCCcccccchHHHHhhhhh-cCCCCCCCcccccHHHHHHHHHhcCCCccc
Confidence            899887766667779999 899999999999887543211 11111111 111221  2457889999999999998   


Q ss_pred             --CHHHHH
Q 013230          428 --SAKEAI  433 (447)
Q Consensus       428 --sa~elL  433 (447)
                        |+.+++
T Consensus       252 Rpt~~~i~  259 (267)
T cd08229         252 RPDITYVY  259 (267)
T ss_pred             CCCHHHHH
Confidence              888665

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.96  E-value=1.1e-27  Score=231.54  Aligned_cols=229  Identities=23%  Similarity=0.228  Sum_probs=179.0

Q ss_pred             CCcceEEeccccceEEEEece---------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN---------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACT  203 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~---------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~  203 (447)
                      +|.+.++||+|+||.||+|..         +|+|......       .....+.+.+|+.+++.++|        +|   
T Consensus         7 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~-------~~~~~~~~~~e~~~l~~~~h--------~~---   68 (270)
T cd05056           7 DITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCT-------SPSVREKFLQEAYIMRQFDH--------PH---   68 (270)
T ss_pred             hceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcC-------CHHHHHHHHHHHHHHHhCCC--------Cc---
Confidence            358889999999999999862         7778765331       12344678999999999988        88   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHH
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQ  278 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Q  278 (447)
                       |+++++++.                               .+..|+||||+.+| +|.+++.     +++..++.++.|
T Consensus        69 -i~~~~~~~~-------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~  115 (270)
T cd05056          69 -IVKLIGVIT-------------------------------ENPVWIVMELAPLG-ELRSYLQVNKYSLDLASLILYSYQ  115 (270)
T ss_pred             -hhceeEEEc-------------------------------CCCcEEEEEcCCCC-cHHHHHHhCCCCCCHHHHHHHHHH
Confidence             999998742                               24578999999988 9999875     789999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE------EEecC
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF------FLDLS  352 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i------~~~~~  352 (447)
                      ++.||+|||+ +|++||||||+|||++.++                    .+||+|||+++........      ....|
T Consensus       116 l~~~l~~lH~-~~~~H~dl~p~nili~~~~--------------------~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y  174 (270)
T cd05056         116 LSTALAYLES-KRFVHRDIAARNVLVSSPD--------------------CVKLGDFGLSRYLEDESYYKASKGKLPIKW  174 (270)
T ss_pred             HHHHHHHHHh-CCeeccccChheEEEecCC--------------------CeEEccCceeeecccccceecCCCCccccc
Confidence            9999999999 9999999999999999987                    7999999999875443110      11237


Q ss_pred             CCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----
Q 013230          353 QDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       353 ~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      ++||.+.+.......|+|+ +|.+.++++. |..|+............. .....+.+...+.++++++.+|+..+    
T Consensus       175 ~aPE~~~~~~~~~~~Di~s-lG~il~el~~~g~~pf~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~P~~R  252 (270)
T cd05056         175 MAPESINFRRFTSASDVWM-FGVCMWEILMLGVKPFQGVKNNDVIGRIE-NGERLPMPPNCPPTLYSLMTKCWAYDPSKR  252 (270)
T ss_pred             cChhhhccCCCCchhhhHH-HHHHHHHHHHcCCCCCCCCCHHHHHHHHH-cCCcCCCCCCCCHHHHHHHHHHcCCChhhC
Confidence            8999887766677779999 8999999885 788875543333332222 22334445667899999999999998    


Q ss_pred             -CHHHHHcC
Q 013230          428 -SAKEAIFD  435 (447)
Q Consensus       428 -sa~elL~H  435 (447)
                       |+.+++..
T Consensus       253 pt~~~~~~~  261 (270)
T cd05056         253 PRFTELKAQ  261 (270)
T ss_pred             cCHHHHHHH
Confidence             88887753

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.96  E-value=6.5e-28  Score=234.81  Aligned_cols=228  Identities=18%  Similarity=0.140  Sum_probs=175.1

Q ss_pred             CCcceEEeccccceEEEEece----------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN----------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~----------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      +|++++.||+|+||.||+|..          +|+|.+...       ........+..|+.+++.++|        ||  
T Consensus         8 ~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~-------~~~~~~~~~~~~~~~l~~l~h--------~~--   70 (279)
T cd05111           8 ELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDR-------SGRQTFQEITDHMLAMGSLDH--------AY--   70 (279)
T ss_pred             hceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccc-------cchHHHHHHHHHHHHHhcCCC--------CC--
Confidence            468899999999999999863          566655321       122334567788888888888        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHH
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLV  277 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~  277 (447)
                        |+++++++.                               ....+++|||+.+| +|.+++.     +++..++.++.
T Consensus        71 --iv~~~~~~~-------------------------------~~~~~~i~e~~~~g-sL~~~l~~~~~~~~~~~~~~i~~  116 (279)
T cd05111          71 --IVRLLGICP-------------------------------GASLQLVTQLSPLG-SLLDHVRQHRDSLDPQRLLNWCV  116 (279)
T ss_pred             --cceEEEEEC-------------------------------CCccEEEEEeCCCC-cHHHHHHhcccCCCHHHHHHHHH
Confidence              999998732                               24478999999988 9999885     78999999999


Q ss_pred             HHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-------EEEe
Q 013230          278 QVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-------FFLD  350 (447)
Q Consensus       278 Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-------i~~~  350 (447)
                      ||+.||+|||+ .|++||||||+|||++.++                    .+||+|||+++.......       ....
T Consensus       117 qi~~~l~~lH~-~~iiH~dlkp~nili~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~  175 (279)
T cd05111         117 QIAKGMYYLEE-HRMVHRNLAARNILLKSDS--------------------IVQIADFGVADLLYPDDKKYFYSEHKTPI  175 (279)
T ss_pred             HHHHHHHHHHH-CCEeccccCcceEEEcCCC--------------------cEEEcCCccceeccCCCcccccCCCCCcc
Confidence            99999999999 9999999999999999886                    799999999986533211       1112


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc--
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d--  427 (447)
                      .|++||.+.+...+.+.|+|+ +|.+.+++++ +..|+..... ....+.+......+.+...+.++.+++.+|+..|  
T Consensus       176 ~y~~pE~~~~~~~~~~~Dv~s-lG~il~el~t~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~  253 (279)
T cd05111         176 KWMALESILFGRYTHQSDVWS-YGVTVWEMMSYGAEPYAGMRP-HEVPDLLEKGERLAQPQICTIDVYMVMVKCWMIDEN  253 (279)
T ss_pred             cccCHHHhccCCcCchhhHHH-HHHHHHHHHcCCCCCCCCCCH-HHHHHHHHCCCcCCCCCCCCHHHHHHHHHHcCCCcc
Confidence            378899887767777789999 8999999987 7778754322 2223333323334444556788999999999999  


Q ss_pred             ---CHHHHHc
Q 013230          428 ---SAKEAIF  434 (447)
Q Consensus       428 ---sa~elL~  434 (447)
                         |+.|+++
T Consensus       254 ~Rps~~el~~  263 (279)
T cd05111         254 VRPTFKELAN  263 (279)
T ss_pred             cCcCHHHHHH
Confidence               8888765

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.96  E-value=2.7e-28  Score=234.49  Aligned_cols=230  Identities=19%  Similarity=0.214  Sum_probs=169.2

Q ss_pred             EEeccccceEEEEece-------------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          138 VKVGEGTFGEAFLAGN-------------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~~-------------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      +.||+|+||.||+|..             +|+|.+...        .....+.+.+|+.+++.++|        ||    
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~--------~~~~~~~~~~e~~~l~~~~h--------~~----   60 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKS--------HRNYSESFFEAASMMSQLSH--------KH----   60 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcch--------hHHHHHHHHHHHHHHHhCCC--------CC----
Confidence            3699999999999963             556655422        12334577889999999988        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQV  279 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qi  279 (447)
                      |+++++++..                              .+..++||||+.+| +|.+++.     +++..+..++.||
T Consensus        61 iv~~~~~~~~------------------------------~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~~~~qi  109 (258)
T cd05078          61 LVLNYGVCVC------------------------------GDESIMVQEYVKFG-SLDTYLKKNKNLINISWKLEVAKQL  109 (258)
T ss_pred             hhheeeEEEe------------------------------CCCcEEEEecCCCC-cHHHHHhcCCCCCCHHHHHHHHHHH
Confidence            9999998654                              45689999999988 9999885     7899999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE-EEecCCCCCCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF-FLDLSQDPELF  358 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i-~~~~~~~pelf  358 (447)
                      +.||+|||+ +||+||||||+|||++.++...           .... ..++++|||++......... ....|++||.+
T Consensus       110 ~~~l~~lH~-~~iiH~dlkp~nili~~~~~~~-----------~~~~-~~~~l~d~g~~~~~~~~~~~~~~~~y~aPE~~  176 (258)
T cd05078         110 AWALHFLED-KGLTHGNVCAKNVLLIREEDRK-----------TGNP-PFIKLSDPGISITVLPKEILLERIPWVPPECI  176 (258)
T ss_pred             HHHHHHHHH-CCeecCCCccceEEEecccccc-----------cCCC-ceEEecccccccccCCchhccccCCccCchhc
Confidence            999999999 9999999999999998875200           0001 14899999998765443221 22338899999


Q ss_pred             CCCC-CCchHHHHHhhccCCcccccCC-CCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHH
Q 013230          359 SGPK-GDKQFDTYRKMKKVTEDQWEGS-FPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKE  431 (447)
Q Consensus       359 ~g~~-~~~~~di~s~lg~~~~~~~~~~-~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~e  431 (447)
                      .+.. .....|+|+ +|.+.++++.+. .|+........ .....  .....+...+.++.+|+++||+.|     |+++
T Consensus       177 ~~~~~~~~~~Diws-lG~~l~~l~~g~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~  252 (258)
T cd05078         177 ENPQNLSLAADKWS-FGTTLWEIFSGGDKPLSALDSQKK-LQFYE--DRHQLPAPKWTELANLINQCMDYEPDFRPSFRA  252 (258)
T ss_pred             cCCCCCCchhhHHH-HHHHHHHHHcCCCCChhhccHHHH-HHHHH--ccccCCCCCcHHHHHHHHHHhccChhhCCCHHH
Confidence            7633 455679999 899999999985 45443222111 11111  122233446688999999999999     9999


Q ss_pred             HHcC
Q 013230          432 AIFD  435 (447)
Q Consensus       432 lL~H  435 (447)
                      +++.
T Consensus       253 il~~  256 (258)
T cd05078         253 IIRD  256 (258)
T ss_pred             HHHh
Confidence            8864

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.96  E-value=8.5e-28  Score=240.06  Aligned_cols=242  Identities=20%  Similarity=0.233  Sum_probs=178.5

Q ss_pred             CcceEEeccccceEEEEece--------eEEEEEecCCCcccccccccchHHHHHHHHHHHhcc-ccccCCCCCCCcccc
Q 013230          134 PENIVKVGEGTFGEAFLAGN--------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN-HLRRNEGDTLNACTT  204 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~--------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~n~~~~  204 (447)
                      |++.+.||+|+||.||+|+.        +|+|.+....      ........+.+|+.+++++. |        +|    
T Consensus         2 y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~------~~~~~~~~~~~E~~~l~~l~~h--------~~----   63 (332)
T cd07857           2 YELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVF------SKKILAKRALRELKLLRHFRGH--------KN----   63 (332)
T ss_pred             ceEEEEccccCCeEEEEEEeCCCCcCceEEEEEecccc------ccchhHHHHHHHHHHHHHhcCC--------CC----
Confidence            58899999999999999973        8999876331      12223456788999999985 5        66    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVT  280 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil  280 (447)
                      |+++++......                          .....+|++|+|+. + +|.+++.    +++..++.++.||+
T Consensus        64 iv~~~~~~~~~~--------------------------~~~~~~~~~~e~~~-~-~L~~~l~~~~~~~~~~~~~~~~qi~  115 (332)
T cd07857          64 ITCLYDMDIVFP--------------------------GNFNELYLYEELME-A-DLHQIIRSGQPLTDAHFQSFIYQIL  115 (332)
T ss_pred             hheeeeeeeecc--------------------------ccCCcEEEEEeccc-C-CHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            999988743310                          11245899999986 4 8888775    89999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---------CEEEEec
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---------DIFFLDL  351 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---------g~i~~~~  351 (447)
                      .||+|||+ .||+||||||+|||++.++                    .+||+|||+|+.....         +.+....
T Consensus       116 ~aL~~LH~-~givH~dlkp~Nili~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~  174 (332)
T cd07857         116 CGLKYIHS-ANVLHRDLKPGNLLVNADC--------------------ELKICDFGLARGFSENPGENAGFMTEYVATRW  174 (332)
T ss_pred             HHHHHHHh-CCcccCCCCHHHeEEcCCC--------------------CEEeCcCCCceecccccccccccccCcccCcc
Confidence            99999999 9999999999999999887                    7999999999865432         1123344


Q ss_pred             CCCCCCCCC-CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh-----------------------hc----
Q 013230          352 SQDPELFSG-PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL-----------------------LK----  403 (447)
Q Consensus       352 ~~~pelf~g-~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~-----------------------~~----  403 (447)
                      |++||.+.+ ...+.+.|+|+ +|.+.++++.+..|+........+...+.                       ..    
T Consensus       175 y~aPE~~~~~~~~~~~~Di~s-lGv~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (332)
T cd07857         175 YRAPEIMLSFQSYTKAIDVWS-VGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPDEETLSRIGSPKAQNYIRSLPNIP  253 (332)
T ss_pred             ccCcHHHhCCCCCCcHHHHHH-HHHHHHHHHhCCcCCCCCCHHHHHHHHHHHhCCCCHHHHHhhhhhhHHHHHHhccccC
Confidence            789997765 34556679999 89999998888877754321111111000                       00    


Q ss_pred             -cCCC-CCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          404 -KTFD-RSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       404 -~~~~-~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                       ..++ .....+.++++|+.+||++|     |+.|++.||||+.+..
T Consensus       254 ~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~~~~~~~~~~  300 (332)
T cd07857         254 KKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEALEHPYLAIWHD  300 (332)
T ss_pred             CcchHhhCCCCCHHHHHHHHHHccCCcccCCCHHHHhcChhhhhhcC
Confidence             0000 01235789999999999999     9999999999987654

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.96  E-value=9.5e-28  Score=230.41  Aligned_cols=226  Identities=18%  Similarity=0.196  Sum_probs=170.1

Q ss_pred             EEeccccceEEEEec---------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          138 VKVGEGTFGEAFLAG---------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~---------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      +.||+|+||.||+|.         .+|+|.+...       ......+.+.+|+.+++.++|        ||    |+++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~-------~~~~~~~~~~~e~~~l~~l~h--------~~----iv~~   61 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRI-------TDLEEVEQFLKEGIIMKDFSH--------PN----VLSL   61 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCcc-------CCHHHHHHHHHHHHHHccCCC--------CC----cceE
Confidence            368999999999986         2788876422       112234678899999999988        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~gL  283 (447)
                      ++++..                             .++..|++|||+.+| +|.+++.     ++...+..++.||+.||
T Consensus        62 ~~~~~~-----------------------------~~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~i~~~l  111 (262)
T cd05058          62 LGICLP-----------------------------SEGSPLVVLPYMKHG-DLRNFIRSETHNPTVKDLIGFGLQVAKGM  111 (262)
T ss_pred             EEEeec-----------------------------CCCCcEEEEecCCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            987432                             134578999999988 9999875     56778888999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC---------EEEEecCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED---------IFFLDLSQD  354 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g---------~i~~~~~~~  354 (447)
                      +|||+ .+++||||||+|||++.++                    .+||+|||+++.....+         ......|++
T Consensus       112 ~~lH~-~~i~H~dlk~~nili~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~a  170 (262)
T cd05058         112 EYLAS-KKFVHRDLAARNCMLDESF--------------------TVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMA  170 (262)
T ss_pred             HHHHh-CCccccccCcceEEEcCCC--------------------cEEECCccccccccCCcceeecccccCcCCccccC
Confidence            99999 9999999999999999887                    79999999998654321         111224789


Q ss_pred             CCCCCCCCCCchHHHHHhhccCCcccccCC-CCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C
Q 013230          355 PELFSGPKGDKQFDTYRKMKKVTEDQWEGS-FPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S  428 (447)
Q Consensus       355 pelf~g~~~~~~~di~s~lg~~~~~~~~~~-~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s  428 (447)
                      ||.+.+.....+.|+|+ +|.+.++++++. .|+....... +...+......+.+...++.+.+++.+||..+     +
T Consensus       171 PE~~~~~~~~~~~Di~s-lG~~l~el~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~  248 (262)
T cd05058         171 LESLQTQKFTTKSDVWS-FGVLLWELMTRGAPPYPDVDSFD-ITVYLLQGRRLLQPEYCPDPLYEVMLSCWHPKPEMRPT  248 (262)
T ss_pred             hhHhccCccchHHHHHH-HHHHHHHHHcCCCCCCCCCCHHH-HHHHHhcCCCCCCCCcCCHHHHHHHHHHcCCChhhCCC
Confidence            99887766677789999 899999999854 4444322222 22223222233334556889999999999988     8


Q ss_pred             HHHHHcC
Q 013230          429 AKEAIFD  435 (447)
Q Consensus       429 a~elL~H  435 (447)
                      +.|+++.
T Consensus       249 ~~~il~~  255 (262)
T cd05058         249 FSELVSR  255 (262)
T ss_pred             HHHHHHH
Confidence            8888753

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.95  E-value=1.1e-27  Score=230.94  Aligned_cols=228  Identities=17%  Similarity=0.170  Sum_probs=177.4

Q ss_pred             CcceEEeccccceEEEEece---------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          134 PENIVKVGEGTFGEAFLAGN---------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~---------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      |+..+.||+|+||.||+|+.         +|+|.+....       .......+..|+.+++.++|        +|    
T Consensus         7 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~-------~~~~~~~~~~e~~~l~~l~h--------~~----   67 (268)
T cd05063           7 ITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGY-------TEKQRQDFLSEASIMGQFSH--------HN----   67 (268)
T ss_pred             ceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccC-------CHHHHHHHHHHHHHHhcCCC--------CC----
Confidence            47889999999999999962         7888775431       22234668899999999988        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQV  279 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qi  279 (447)
                      |+++.+++..                              .+..|+||||+.+| +|.+++.     +++..+..++.|+
T Consensus        68 i~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~l  116 (268)
T cd05063          68 IIRLEGVVTK------------------------------FKPAMIITEYMENG-ALDKYLRDHDGEFSSYQLVGMLRGI  116 (268)
T ss_pred             eeEEEEEEcc------------------------------CCCcEEEEEcCCCC-CHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            9999998532                              45689999999987 9998874     7899999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-EEE-------Eec
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-IFF-------LDL  351 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-~i~-------~~~  351 (447)
                      +.||+|||+ .|++||||||+|||++.++                    .+||+|||+++...... ...       ...
T Consensus       117 ~~al~~lH~-~~i~H~dlkp~Nili~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~  175 (268)
T cd05063         117 AAGMKYLSD-MNYVHRDLAARNILVNSNL--------------------ECKVSDFGLSRVLEDDPEGTYTTSGGKIPIR  175 (268)
T ss_pred             HHHHHHHHH-CCeeccccchhhEEEcCCC--------------------cEEECCCccceecccccccceeccCCCcCce
Confidence            999999999 9999999999999999876                    79999999998654321 111       113


Q ss_pred             CCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc---
Q 013230          352 SQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN---  427 (447)
Q Consensus       352 ~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d---  427 (447)
                      |++||.+.+...+...|+|+ +|.+.++++. |..|+...........+. .....+.....+.++.+|+.+|++.+   
T Consensus       176 y~~PE~~~~~~~~~~~Dv~s-lG~il~ell~~g~~p~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~li~~c~~~~p~~  253 (268)
T cd05063         176 WTAPEAIAYRKFTSASDVWS-FGIVMWEVMSFGERPYWDMSNHEVMKAIN-DGFRLPAPMDCPSAVYQLMLQCWQQDRAR  253 (268)
T ss_pred             ecCHHHhhcCCcChHhHHHH-HHHHHHHHHhCCCCCCCcCCHHHHHHHHh-cCCCCCCCCCCCHHHHHHHHHHcCCCccc
Confidence            78999988777777789999 8999999886 888886543322222222 22334444557889999999999988   


Q ss_pred             --CHHHHHc
Q 013230          428 --SAKEAIF  434 (447)
Q Consensus       428 --sa~elL~  434 (447)
                        ++.++++
T Consensus       254 Rp~~~~i~~  262 (268)
T cd05063         254 RPRFVDIVN  262 (268)
T ss_pred             CcCHHHHHH
Confidence              8888764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.95  E-value=5.9e-28  Score=239.24  Aligned_cols=228  Identities=21%  Similarity=0.255  Sum_probs=174.3

Q ss_pred             CcceEEeccccceEEEEec-------------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhcc-ccccCCCCCC
Q 013230          134 PENIVKVGEGTFGEAFLAG-------------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN-HLRRNEGDTL  199 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-------------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~  199 (447)
                      |.+.++||+|+||.||+|+             .+|+|.+....       .......+..|+.+++.+. |        |
T Consensus        14 ~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~-------~~~~~~~~~~E~~~l~~l~~h--------~   78 (314)
T cd05099          14 LVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNA-------TDKDLADLISEMELMKLIGKH--------K   78 (314)
T ss_pred             eeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCC-------ChHHHHHHHHHHHHHHhccCC--------C
Confidence            3889999999999999985             28888765321       1223456889999999984 6        7


Q ss_pred             CcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------------
Q 013230          200 NACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------------  266 (447)
Q Consensus       200 n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------------  266 (447)
                      |    |+++++++..                              ++.+|++|||+.+| +|.+++.             
T Consensus        79 ~----iv~~~~~~~~------------------------------~~~~~lv~e~~~~g-~L~~~i~~~~~~~~~~~~~~  123 (314)
T cd05099          79 N----IINLLGVCTQ------------------------------EGPLYVIVEYAAKG-NLREFLRARRPPGPDYTFDI  123 (314)
T ss_pred             C----eeeEEEEEcc------------------------------CCceEEEEecCCCC-cHHHHHHhcCCCcccccccc
Confidence            7    9999998532                              45689999999988 9988872             


Q ss_pred             -------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeecccee
Q 013230          267 -------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSR  339 (447)
Q Consensus       267 -------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~  339 (447)
                             +++..+..++.||+.||.|||+ +||+||||||+|||++.++                    .+||+|||+++
T Consensus       124 ~~~~~~~l~~~~~~~~~~qi~~aL~~lH~-~gi~H~dlkp~Nill~~~~--------------------~~kL~Dfg~~~  182 (314)
T cd05099         124 TKVPEEQLSFKDLVSCAYQVARGMEYLES-RRCIHRDLAARNVLVTEDN--------------------VMKIADFGLAR  182 (314)
T ss_pred             cCCcccccCHHHHHHHHHHHHHHHHHHHH-CCeeeccccceeEEEcCCC--------------------cEEEccccccc
Confidence                   6778889999999999999999 9999999999999999887                    79999999998


Q ss_pred             ecCCCCE-------EEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCcc
Q 013230          340 INTGEDI-------FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSK  411 (447)
Q Consensus       340 ~~~~~g~-------i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~  411 (447)
                      .......       .....|++||.+.+...+...|+|+ +|.+.++++. +..|+......... ..+........+..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Diws-lG~~l~el~~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~  260 (314)
T cd05099         183 GVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWS-FGILMWEIFTLGGSPYPGIPVEELF-KLLREGHRMDKPSN  260 (314)
T ss_pred             cccccccccccccCCCCccccCHHHHccCCcCccchhhH-HHHHHHHHHhCCCCCCCCCCHHHHH-HHHHcCCCCCCCCC
Confidence            6543211       0112478999887766677779999 8999999987 66777554332222 22222222333456


Q ss_pred             chHHHHHHHHHhcccc-----CHHHHHc
Q 013230          412 DERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       412 ~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      .+.++++|+.+||..|     |+.|+++
T Consensus       261 ~~~~l~~li~~cl~~~p~~Rps~~~ll~  288 (314)
T cd05099         261 CTHELYMLMRECWHAVPTQRPTFKQLVE  288 (314)
T ss_pred             CCHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence            7889999999999998     8888764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.95  E-value=1.2e-27  Score=229.68  Aligned_cols=226  Identities=21%  Similarity=0.239  Sum_probs=178.9

Q ss_pred             CCcceEEeccccceEEEEece-----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN-----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~-----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      +|++.++||+|+||.||+|..     +|+|.+....         .....+.+|+.+++.++|        +|    |++
T Consensus         7 ~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~---------~~~~~~~~e~~~l~~l~h--------~~----i~~   65 (261)
T cd05034           7 SLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGT---------MSPEAFLQEAQIMKKLRH--------DK----LVQ   65 (261)
T ss_pred             heeeeeeeccCcceEEEEEEEcCCceEEEEEecCCc---------cCHHHHHHHHHHHhhCCC--------CC----Eee
Confidence            358999999999999999873     8999876332         123578999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +++++..                              ....|+||||+.+| +|.+++.      ++...++.++.|++.
T Consensus        66 ~~~~~~~------------------------------~~~~~~v~e~~~~~-~L~~~i~~~~~~~~~~~~~~~~~~~i~~  114 (261)
T cd05034          66 LYAVCSE------------------------------EEPIYIVTEYMSKG-SLLDFLKSGEGKKLRLPQLVDMAAQIAE  114 (261)
T ss_pred             eeeeeec------------------------------CCceEEEEeccCCC-CHHHHHhccccCCCCHHHHHHHHHHHHH
Confidence            9988432                              45689999999987 9998874      789999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------CEEEEecCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------DIFFLDLSQDP  355 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g~i~~~~~~~p  355 (447)
                      ||+|||+ +|++||||||+||+++.++                    .+||+|||+++.....      +......|++|
T Consensus       115 al~~lh~-~~i~h~di~p~nili~~~~--------------------~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~P  173 (261)
T cd05034         115 GMAYLES-RNYIHRDLAARNILVGENL--------------------VCKIADFGLARLIEDDEYTAREGAKFPIKWTAP  173 (261)
T ss_pred             HHHHHHh-CCcccCCcchheEEEcCCC--------------------CEEECccccceeccchhhhhhhccCCCccccCH
Confidence            9999999 9999999999999999987                    7999999999876432      11112347899


Q ss_pred             CCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CH
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SA  429 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa  429 (447)
                      |.+.+.....+.|+|+ +|.+.+++++ +..|+........+.... .....+.+...+.++++++.+||..+     |+
T Consensus       174 E~~~~~~~~~~~Di~s-lG~il~~l~t~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~  251 (261)
T cd05034         174 EAANYGRFTIKSDVWS-FGILLTEIVTYGRVPYPGMTNREVLEQVE-RGYRMPRPPNCPEELYDLMLQCWDKDPEERPTF  251 (261)
T ss_pred             HHhccCCcCchhHHHH-HHHHHHHHHhCCCCCCCCCCHHHHHHHHH-cCCCCCCCCCCCHHHHHHHHHHcccCcccCCCH
Confidence            9998877777789999 8999999997 788876543333333322 12233444556889999999999998     88


Q ss_pred             HHHH
Q 013230          430 KEAI  433 (447)
Q Consensus       430 ~elL  433 (447)
                      ++++
T Consensus       252 ~~l~  255 (261)
T cd05034         252 EYLQ  255 (261)
T ss_pred             HHHH
Confidence            8876

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.95  E-value=4e-28  Score=253.52  Aligned_cols=258  Identities=20%  Similarity=0.189  Sum_probs=174.1

Q ss_pred             CCCcceEEeccccceEEEEec----------------------eeEEEEEecCCCccccc------ccccchHHHHHHHH
Q 013230          132 SDPENIVKVGEGTFGEAFLAG----------------------NTVCKVVPIDGDLKVNG------EAQKKSEELLEEVV  183 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~----------------------~vAiK~i~~~~~~~~~~------~~~~~~~~~~~Ei~  183 (447)
                      .+|++.++||+|+||.||+|.                      .||+|.+..........      ......+....|+.
T Consensus       145 d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~~  224 (507)
T PLN03224        145 DDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEAY  224 (507)
T ss_pred             cCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHHH
Confidence            467999999999999999983                      38999876432100000      00011233456777


Q ss_pred             HHHhccccccCCCCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhh
Q 013230          184 LSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLES  263 (447)
Q Consensus       184 il~~L~h~~~~~~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~  263 (447)
                      ++.+++|.       ++.+.+++++++++.....                      ...+.+...|+||||+.+| +|.+
T Consensus       225 ~l~~l~~~-------~l~~~~~~~~lg~~~~~~~----------------------~g~~~~~~~~LV~Ey~~~g-sL~~  274 (507)
T PLN03224        225 MCAKIKRN-------PIAAASCAEYLGYFTSNTA----------------------DGAFTKGSQWLVWKFESDA-TLGD  274 (507)
T ss_pred             HHHHhhcc-------cchhhhhhhhhhhcccccc----------------------cccccCCceEEEEEcCCCC-cHHH
Confidence            88888761       3334456777776533110                      0122356689999999987 8877


Q ss_pred             hhc----------------------------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCcccccc
Q 013230          264 FVL----------------------------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFL  315 (447)
Q Consensus       264 ~i~----------------------------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~  315 (447)
                      ++.                            +++..++.++.|++.||.|||+ .+|+||||||+|||++.++       
T Consensus       275 ~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~~~~~~i~~ql~~aL~~lH~-~~ivHrDLKp~NILl~~~~-------  346 (507)
T PLN03224        275 ALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDINVIKGVMRQVLTGLRKLHR-IGIVHRDIKPENLLVTVDG-------  346 (507)
T ss_pred             HHhhccCCCcchHHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHHHHHHHH-CCeecCCCchHhEEECCCC-------
Confidence            653                            2456788999999999999999 9999999999999999887       


Q ss_pred             ccCcccccccCCCcEEEeeccceeecCCCC------EEEEecCCCCCCCCCCCC----------------------CchH
Q 013230          316 LDGKQMFVRTFGLSVTIIDFTLSRINTGED------IFFLDLSQDPELFSGPKG----------------------DKQF  367 (447)
Q Consensus       316 ~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------~i~~~~~~~pelf~g~~~----------------------~~~~  367 (447)
                                   .+||+|||+++......      ......|++||.+.....                      ...+
T Consensus       347 -------------~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~  413 (507)
T PLN03224        347 -------------QVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLF  413 (507)
T ss_pred             -------------cEEEEeCcCccccccCCccCccccCCCcceeChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCcc
Confidence                         79999999997643211      011234788887743211                      1235


Q ss_pred             HHHHhhccCCcccccCCC-CCChhHHHH-H----------HHHHHhhccCCCCCccchHHHHHHHHHhcccc--------
Q 013230          368 DTYRKMKKVTEDQWEGSF-PKTNVLWLV-Y----------LVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN--------  427 (447)
Q Consensus       368 di~s~lg~~~~~~~~~~~-p~~~~~~~~-~----------~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d--------  427 (447)
                      |+|+ +|++.++++.+.. |+.+..... .          ..........++.....++.++||+.+||..+        
T Consensus       414 DvwS-lGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~~~~~~~~~~~~d~~s~~~~dLi~~LL~~~~~~~~~Rl  492 (507)
T PLN03224        414 DSYT-AGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWRMYKGQKYDFSLLDRNKEAGWDLACKLITKRDQANRGRL  492 (507)
T ss_pred             chhh-HHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHHhhcccCCCcccccccChHHHHHHHHHhccCCCCcccCC
Confidence            9999 9999999988764 554321110 0          01111112344445668999999999999963        


Q ss_pred             CHHHHHcCCCCCCC
Q 013230          428 SAKEAIFDPFFSDL  441 (447)
Q Consensus       428 sa~elL~HPff~~~  441 (447)
                      ||+|+|+||||...
T Consensus       493 Sa~eaL~Hp~f~~~  506 (507)
T PLN03224        493 SVGQALSHRFFLPE  506 (507)
T ss_pred             CHHHHhCCCCcCCC
Confidence            99999999999753

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.95  E-value=9.5e-28  Score=234.89  Aligned_cols=228  Identities=21%  Similarity=0.232  Sum_probs=176.3

Q ss_pred             CCcceEEeccccceEEEEece-----------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN-----------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA  201 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~-----------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~  201 (447)
                      +|.+.+.||+|+||.||+|+.           +|+|.+...        .......+.+|+.++++++|        +| 
T Consensus         6 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~--------~~~~~~~~~~e~~~l~~l~h--------~~-   68 (291)
T cd05094           6 DIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDP--------TLAARKDFQREAELLTNLQH--------EH-   68 (291)
T ss_pred             HeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCc--------cHHHHHHHHHHHHHHhcCCC--------CC-
Confidence            458889999999999999862           677765422        12233568899999999988        88 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------------
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------------  266 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------------  266 (447)
                         |+++++++..                              .+..++||||+.+| +|.+++.               
T Consensus        69 ---i~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~i~~~~~~~~~~~~~~~~  114 (291)
T cd05094          69 ---IVKFYGVCGD------------------------------GDPLIMVFEYMKHG-DLNKFLRAHGPDAMILVDGQPR  114 (291)
T ss_pred             ---cceEEEEEcc------------------------------CCceEEEEecCCCC-cHHHHHHhcCcccccccccccc
Confidence               9999998532                              46689999999988 9998873               


Q ss_pred             -----CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeec
Q 013230          267 -----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRIN  341 (447)
Q Consensus       267 -----l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~  341 (447)
                           +++..++.++.||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+++..
T Consensus       115 ~~~~~~~~~~~~~i~~~i~~al~~lH~-~~i~H~dlkp~Nil~~~~~--------------------~~~l~dfg~a~~~  173 (291)
T cd05094         115 QAKGELGLSQMLHIASQIASGMVYLAS-QHFVHRDLATRNCLVGANL--------------------LVKIGDFGMSRDV  173 (291)
T ss_pred             cCcCCCCHHHHHHHHHHHHHHHHHHHh-CCeeecccCcceEEEccCC--------------------cEEECCCCccccc
Confidence                 5788999999999999999999 9999999999999999887                    7999999999764


Q ss_pred             CCCC-------EEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccch
Q 013230          342 TGED-------IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDE  413 (447)
Q Consensus       342 ~~~g-------~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s  413 (447)
                      ....       ......|++||.+.+.....+.|+|+ +|.+.+++++ +..|+........... +........+...+
T Consensus       174 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s-lG~il~el~t~g~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~  251 (291)
T cd05094         174 YSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWS-FGVILWEIFTYGKQPWFQLSNTEVIEC-ITQGRVLERPRVCP  251 (291)
T ss_pred             CCCceeecCCCCCcceeecChHHhccCCCCchhhHHH-HHHHHHHHHhCCCCCCCCCCHHHHHHH-HhCCCCCCCCccCC
Confidence            3321       12223478999998877777889999 8999999998 8888754332222222 22122222344568


Q ss_pred             HHHHHHHHHhcccc-----CHHHHHc
Q 013230          414 RDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       414 ~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      .++.+|+.+||..|     |+.++++
T Consensus       252 ~~~~~li~~~l~~~P~~Rpt~~~v~~  277 (291)
T cd05094         252 KEVYDIMLGCWQREPQQRLNIKEIYK  277 (291)
T ss_pred             HHHHHHHHHHcccChhhCcCHHHHHH
Confidence            89999999999999     7777753

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.95  E-value=1.8e-27  Score=230.97  Aligned_cols=235  Identities=22%  Similarity=0.324  Sum_probs=180.3

Q ss_pred             CcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+++++||+|+||.||+|+      .+|+|++....      ........+.+|+.+++.++|        +|    +++
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~------~~~~~~~~~~~e~~~l~~l~~--------~~----i~~   62 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMEN------EKEGFPITAIREIKLLQKLRH--------PN----IVR   62 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEeccc------ccccchHHHHHHHHHHHhccC--------CC----eee
Confidence            5789999999999999997      38999887542      122344567899999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++...+                            .+..|+||||+. | +|..++.     +++..++.++.||+.|
T Consensus        63 ~~~~~~~~~----------------------------~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~~~~~~i~~~i~~a  112 (287)
T cd07840          63 LKEIVTSKG----------------------------KGSIYMVFEYMD-H-DLTGLLDSPEVKFTESQIKCYMKQLLEG  112 (287)
T ss_pred             heeeEecCC----------------------------CCcEEEEecccc-c-cHHHHHhccCCCCCHHHHHHHHHHHHHH
Confidence            999854310                            256999999997 4 7887764     8899999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------EEEEecCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------IFFLDLSQDPE  356 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------~i~~~~~~~pe  356 (447)
                      |+|||+ .|++|+||||+|||++.++                    .+||+|||+++......      ......|++||
T Consensus       113 l~~LH~-~~~~h~dl~p~nil~~~~~--------------------~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE  171 (287)
T cd07840         113 LQYLHS-NGILHRDIKGSNILINNDG--------------------VLKLADFGLARPYTKRNSADYTNRVITLWYRPPE  171 (287)
T ss_pred             HHHHHH-CCceeccCcHHHeEEcCCC--------------------CEEEccccceeeccCCCcccccccccccccCCce
Confidence            999999 9999999999999999987                    79999999998765432      12234488999


Q ss_pred             CCCCC-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc-----cCCCC----------------------
Q 013230          357 LFSGP-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK-----KTFDR----------------------  408 (447)
Q Consensus       357 lf~g~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~-----~~~~~----------------------  408 (447)
                      .+.+. ....+.|+|+ +|.+.++++++..|+........+.......     ..++.                      
T Consensus       172 ~~~~~~~~~~~~Dv~s-lG~~l~el~t~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (287)
T cd07840         172 LLLGATRYGPEVDMWS-VGCILAELFLGKPIFQGSTELEQLEKIFELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLRE  250 (287)
T ss_pred             eeEccccCChHHHHHH-HHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchhhccccccchhhhhccccccchhHHHH
Confidence            77654 3456679999 8999999999988876443322222111000     00000                      


Q ss_pred             -Ccc-chHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          409 -SSK-DERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       409 -~~~-~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                       ... .+.++.+++++||..|     |+.++++||||
T Consensus       251 ~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~~~~  287 (287)
T cd07840         251 FFKHLIDPSALDLLDKLLTLDPKKRISADQALQHEYF  287 (287)
T ss_pred             HhcccCCHHHHHHHHHHcCCChhhCcCHHHHhhCcCC
Confidence             011 3789999999999999     99999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.95  E-value=1.2e-27  Score=230.82  Aligned_cols=229  Identities=15%  Similarity=0.141  Sum_probs=169.3

Q ss_pred             EEeccccceEEEEec------------------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCC
Q 013230          138 VKVGEGTFGEAFLAG------------------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTL  199 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~------------------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~  199 (447)
                      +.||+|+||.||+|+                  .+|+|++...        .......+.+|+.+++.++|        |
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~--------~~~~~~~~~~~~~~l~~l~h--------p   64 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPS--------HRDISLAFFETASMMRQVSH--------K   64 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChh--------hhhHHHHHHHHHHHHHhCCC--------C
Confidence            368999999999996                  2677765422        12233567888999999988        8


Q ss_pred             CcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHH
Q 013230          200 NACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARS  274 (447)
Q Consensus       200 n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~  274 (447)
                      |    |+++++++..                              +...+++|||+.+| +|..++.     +++..++.
T Consensus        65 ~----iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~l~~~~~~~~~~~~~~~~~~  109 (262)
T cd05077          65 H----IVLLYGVCVR------------------------------DVENIMVEEFVEFG-PLDLFMHRKSDVLTTPWKFK  109 (262)
T ss_pred             C----EeeEEEEEec------------------------------CCCCEEEEecccCC-CHHHHHHhcCCCCCHHHHHH
Confidence            8    9999998532                              45689999999988 8887764     88999999


Q ss_pred             HHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-CEEEEecCC
Q 013230          275 LLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-DIFFLDLSQ  353 (447)
Q Consensus       275 i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-g~i~~~~~~  353 (447)
                      ++.||+.||+|||+ .||+||||||+|||++.++..             ...+..+|++|||++...... +++....|+
T Consensus       110 i~~qi~~~l~~lH~-~~ivH~dlkp~Nill~~~~~~-------------~~~~~~~~l~d~g~~~~~~~~~~~~~~~~y~  175 (262)
T cd05077         110 VAKQLASALSYLED-KDLVHGNVCTKNILLAREGID-------------GECGPFIKLSDPGIPITVLSRQECVERIPWI  175 (262)
T ss_pred             HHHHHHHHHHHhhh-CCeECCCCCcccEEEecCCcc-------------CCCCceeEeCCCCCCccccCccccccccccc
Confidence            99999999999999 999999999999999876510             011124899999998765433 333344589


Q ss_pred             CCCCCC-CCCCCchHHHHHhhccCCcccc-cCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----
Q 013230          354 DPELFS-GPKGDKQFDTYRKMKKVTEDQW-EGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       354 ~pelf~-g~~~~~~~di~s~lg~~~~~~~-~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      +||.+. +.......|||+ +|.+.++++ .+..|+........ ....  ...+......+.++++|+.+||+.|    
T Consensus       176 aPE~~~~~~~~~~~~Diws-lG~~l~el~~~~~~p~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~li~~cl~~dp~~R  251 (262)
T cd05077         176 APECVEDSKNLSIAADKWS-FGTTLWEICYNGEIPLKDKTLAEK-ERFY--EGQCMLVTPSCKELADLMTHCMNYDPNQR  251 (262)
T ss_pred             ChhhhcCCCCCCchhHHHH-HHHHHHHHHhCCCCCCCCcchhHH-HHHH--hcCccCCCCChHHHHHHHHHHcCCChhhC
Confidence            999886 444566679999 899999987 56677654322111 1111  2223333345688999999999999    


Q ss_pred             -CHHHHHcC
Q 013230          428 -SAKEAIFD  435 (447)
Q Consensus       428 -sa~elL~H  435 (447)
                       ++.+++++
T Consensus       252 p~~~~il~~  260 (262)
T cd05077         252 PFFRAIMRD  260 (262)
T ss_pred             cCHHHHHHh
Confidence             99998865

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.95  E-value=2.1e-27  Score=237.25  Aligned_cols=240  Identities=22%  Similarity=0.261  Sum_probs=180.7

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|++++.||+|+||.||+|++      +|+|++....      ........+.+|+.+++.++|        ||    |+
T Consensus        11 ~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------pn----iv   72 (328)
T cd07856          11 RYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPF------STPVLAKRTYRELKLLKHLRH--------EN----II   72 (328)
T ss_pred             ceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccc------cccchhHHHHHHHHHHHhcCC--------CC----ee
Confidence            459999999999999999973      8999876432      122334667899999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGL  283 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL  283 (447)
                      +++++|..                             ....+|++|||+. | +|..++.   +++..++.++.||+.||
T Consensus        73 ~~~~~~~~-----------------------------~~~~~~lv~e~~~-~-~L~~~~~~~~~~~~~~~~~~~ql~~aL  121 (328)
T cd07856          73 SLSDIFIS-----------------------------PLEDIYFVTELLG-T-DLHRLLTSRPLEKQFIQYFLYQILRGL  121 (328)
T ss_pred             eEeeeEec-----------------------------CCCcEEEEeehhc-c-CHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            99998643                             1345899999984 5 8888875   78899999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--CEEEEecCCCCCCCCC-
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--DIFFLDLSQDPELFSG-  360 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--g~i~~~~~~~pelf~g-  360 (447)
                      +|||+ .||+||||||.|||++.++                    .+||+|||+++.....  +......|++||.+.+ 
T Consensus       122 ~~LH~-~~iiH~dl~p~Nili~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~  180 (328)
T cd07856         122 KYVHS-AGVVHRDLKPSNILINENC--------------------DLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTW  180 (328)
T ss_pred             HHHHh-CCcccCCCCHHHEeECCCC--------------------CEEeCccccccccCCCcCCCcccccccCceeeecc
Confidence            99999 9999999999999999886                    7999999999865432  1122334788998755 


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhHHHH---HHHHH-----------------------HhhccCCCC---Ccc
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLV---YLVDM-----------------------LLLKKTFDR---SSK  411 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~---~~~~~-----------------------l~~~~~~~~---~~~  411 (447)
                      .......|+|+ +|.+.+++++|..|+.......   .+.+.                       +......+.   ...
T Consensus       181 ~~~~~~~Dv~s-lG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (328)
T cd07856         181 QKYDVEVDIWS-AGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQSLPKREPVPFSEKFKN  259 (328)
T ss_pred             CCcCcHHHHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHhhccccCCCcHHHHcCC
Confidence            44566779999 8999999999987764321110   00000                       000001111   123


Q ss_pred             chHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          412 DERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       412 ~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                      .+++++++|++||+.+     |+++++.||||.....
T Consensus       260 ~~~~~~~li~~~l~~~P~~R~t~~ell~~~~~~~~~~  296 (328)
T cd07856         260 ADPSAIDLLEKMLVFDPQKRISAAEALAHPYLAPYHD  296 (328)
T ss_pred             CCHHHHHHHHHHcCCChhhCCCHHHHhcCCccccccC
Confidence            6789999999999998     9999999999976543

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.95  E-value=7.1e-28  Score=229.85  Aligned_cols=233  Identities=20%  Similarity=0.213  Sum_probs=184.1

Q ss_pred             CcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.++||+|+||.||+++      .+|+|.+.....      .+.....+.+|+.+++.++|        +|    |++
T Consensus         2 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~------~~~~~~~~~~e~~~l~~l~~--------~~----i~~   63 (256)
T cd08530           2 FKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSM------SQKEREDAVNEIRILASVNH--------PN----IIS   63 (256)
T ss_pred             ceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhc------cHHHHHHHHHHHHHHHhCCC--------CC----chh
Confidence            5899999999999999986      389998875421      22234567889999999988        78    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQV  279 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Qi  279 (447)
                      +++++..                              ....|+||||+.++ +|.+++.        +++..+..++.|+
T Consensus        64 ~~~~~~~------------------------------~~~~~~v~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~~~l  112 (256)
T cd08530          64 YKEAFLD------------------------------GNKLCIVMEYAPFG-DLSKAISKRKKKRKLIPEQEIWRIFIQL  112 (256)
T ss_pred             hhhhhcc------------------------------CCEEEEEehhcCCC-CHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence            9888532                              56799999999877 9988763        7889999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---CEEEEecCCCCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---DIFFLDLSQDPE  356 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---g~i~~~~~~~pe  356 (447)
                      +.||+|||+ .|++||||+|+||+++.++                    .+||+|||+++.....   .......|++||
T Consensus       113 ~~al~~lh~-~~i~h~~l~~~ni~~~~~~--------------------~~kl~d~g~~~~~~~~~~~~~~~~~~~~~Pe  171 (256)
T cd08530         113 LRGLQALHE-QKILHRDLKSANILLVAND--------------------LVKIGDLGISKVLKKNMAKTQIGTPHYMAPE  171 (256)
T ss_pred             HHHHHHHhh-CCcccCCCCcceEEEecCC--------------------cEEEeeccchhhhccCCcccccCCccccCHH
Confidence            999999999 9999999999999999976                    7999999999776443   111223477889


Q ss_pred             CCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHH
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKE  431 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~e  431 (447)
                      .+.+...+.+.|+|+ +|.+.++++.+..|+............. .....+.+...+.++++++.+||..+     |+.+
T Consensus       172 ~~~~~~~~~~~D~~s-lG~~~~~l~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~  249 (256)
T cd08530         172 VWKGRPYSYKSDIWS-LGCLLYEMATFAPPFEARSMQDLRYKVQ-RGKYPPIPPIYSQDLQNFIRSMLQVKPKLRPNCDK  249 (256)
T ss_pred             HHCCCCCCchhhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHh-cCCCCCCchhhCHHHHHHHHHHcCCCcccCCCHHH
Confidence            888877777789999 8999999999998886543333222222 11222233467899999999999988     9999


Q ss_pred             HHcCCCC
Q 013230          432 AIFDPFF  438 (447)
Q Consensus       432 lL~HPff  438 (447)
                      +++||+.
T Consensus       250 ~l~~p~~  256 (256)
T cd08530         250 ILASPAV  256 (256)
T ss_pred             HhcCCCC
Confidence            9999984

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.95  E-value=2.1e-27  Score=230.32  Aligned_cols=232  Identities=19%  Similarity=0.245  Sum_probs=179.8

Q ss_pred             CCcceEEeccccceEEEEec----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          133 DPENIVKVGEGTFGEAFLAG----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      +|+.++.||+|+||.||+|+          .+|+|++.....      . .....+.+|+.+++.++|        +|  
T Consensus         5 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~------~-~~~~~~~~ei~~l~~l~~--------~~--   67 (284)
T cd05038           5 HLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGE------E-QHRSDFEREIEILRTLDH--------EN--   67 (284)
T ss_pred             hchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccc------h-HHHHHHHHHHHHHHhCCC--------CC--
Confidence            45888999999999999986          389998874422      1 234678999999999988        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHH
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLV  277 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~  277 (447)
                        |+++++++...+                            ....|++|||+.+| +|.+++.     +++..+..++.
T Consensus        68 --i~~~~~~~~~~~----------------------------~~~~~lv~e~~~~~-~l~~~l~~~~~~~~~~~~~~~~~  116 (284)
T cd05038          68 --IVKYKGVCEKPG----------------------------GRSLRLIMEYLPSG-SLRDYLQRHRDQINLKRLLLFSS  116 (284)
T ss_pred             --hheEEeeeecCC----------------------------CCceEEEEecCCCC-CHHHHHHhCccccCHHHHHHHHH
Confidence              999998753211                            35689999999988 9999885     88999999999


Q ss_pred             HHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE--------EEE
Q 013230          278 QVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI--------FFL  349 (447)
Q Consensus       278 Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~--------i~~  349 (447)
                      ||+.||+|||+ .||+||||||+|||++.++                    .++|+|||++........        ...
T Consensus       117 ~l~~aL~~lH~-~~i~H~dl~p~nil~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~  175 (284)
T cd05038         117 QICKGMDYLGS-QRYIHRDLAARNILVESED--------------------LVKISDFGLAKVLPEDKDYYYVKEPGESP  175 (284)
T ss_pred             HHHHHHHHHHh-CCeecCCCCHHhEEEcCCC--------------------CEEEcccccccccccCCcceeccCCCCCc
Confidence            99999999999 9999999999999999887                    799999999987653211        011


Q ss_pred             ecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHH--------------HHHHHHHHhhccCCCCCccchHH
Q 013230          350 DLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLW--------------LVYLVDMLLLKKTFDRSSKDERD  415 (447)
Q Consensus       350 ~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~--------------~~~~~~~l~~~~~~~~~~~~s~~  415 (447)
                      ..|++|+.+.+.......|+|+ +|.+.++++++..|+.....              ...+...+.....++.+...+.+
T Consensus       176 ~~~~~Pe~~~~~~~~~~~Di~s-lG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (284)
T cd05038         176 IFWYAPECLRTSKFSSASDVWS-FGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGERLPRPPSCPDE  254 (284)
T ss_pred             ccccCcHHHccCCCCcccchHH-HhhhhheeeccCCCcccccchhccccccccccccHHHHHHHHHcCCcCCCCccCCHH
Confidence            2367888887766666679999 99999999998877654211              11122333223344444556789


Q ss_pred             HHHHHHHhcccc-----CHHHHHc
Q 013230          416 LRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       416 l~dLl~~mL~~d-----sa~elL~  434 (447)
                      +.+|+.+||..+     |+.|+++
T Consensus       255 ~~~li~~cl~~~p~~Rpt~~ei~~  278 (284)
T cd05038         255 VYDLMKLCWEAEPQDRPSFADLIL  278 (284)
T ss_pred             HHHHHHHHhccChhhCCCHHHHHH
Confidence            999999999998     9998875

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.95  E-value=1.2e-27  Score=229.00  Aligned_cols=225  Identities=20%  Similarity=0.238  Sum_probs=175.7

Q ss_pred             CCcceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          133 DPENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      +|++.+.||+|+||.||++.    .+|+|.+....          ..+.+.+|+.+++.++|        +|    ++++
T Consensus         7 ~~~~~~~lg~g~~g~v~~~~~~~~~~~iK~~~~~~----------~~~~~~~e~~~l~~~~~--------~~----i~~~   64 (254)
T cd05083           7 KLTLGEIIGEGEFGAVLQGEYTGQKVAVKNIKCDV----------TAQAFLEETAVMTKLHH--------KN----LVRL   64 (254)
T ss_pred             HceeeeeeccCCCCceEecccCCCceEEEeecCcc----------hHHHHHHHHHHHHhCCC--------CC----cCeE
Confidence            35899999999999999987    48999875321          23568899999999988        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAG  282 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~g  282 (447)
                      ++++.                               .+..|++|||+.+| +|.+++.      +++..+..++.|++.|
T Consensus        65 ~~~~~-------------------------------~~~~~~v~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~qi~~a  112 (254)
T cd05083          65 LGVIL-------------------------------HNGLYIVMELMSKG-NLVNFLRTRGRALVSVIQLLQFSLDVAEG  112 (254)
T ss_pred             EEEEc-------------------------------CCCcEEEEECCCCC-CHHHHHHhcCcCCCCHHHHHHHHHHHHHH
Confidence            98853                               23479999999988 9998875      6888999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--CEEEEecCCCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--DIFFLDLSQDPELFSG  360 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--g~i~~~~~~~pelf~g  360 (447)
                      |.|||+ .|++||||||+|||++.++                    .+||+|||+++.....  +......|++||.+.+
T Consensus       113 l~~lH~-~~~~H~dl~p~nili~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~y~~pe~~~~  171 (254)
T cd05083         113 MEYLES-KKLVHRDLAARNILVSEDG--------------------VAKVSDFGLARVGSMGVDNSKLPVKWTAPEALKH  171 (254)
T ss_pred             HHHHHh-CCeeccccCcceEEEcCCC--------------------cEEECCCccceeccccCCCCCCCceecCHHHhcc
Confidence            999999 9999999999999999887                    7999999999865432  2122234789998877


Q ss_pred             CCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      .....+.|+|+ +|.+.++++. +..|+.......... ........+.+...+.++++|+.+||..+     |+++++.
T Consensus       172 ~~~~~~~Dv~s-lG~~l~el~~~g~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  249 (254)
T cd05083         172 KKFSSKSDVWS-YGVLLWEVFSYGRAPYPKMSLKEVKE-CVEKGYRMEPPEGCPADVYVLMTSCWETEPKKRPSFHKLRE  249 (254)
T ss_pred             CCcCchhhHHH-HHHHHHHHHhCCCCCCccCCHHHHHH-HHhCCCCCCCCCcCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            66667779999 9999999886 777775543333222 22112222334567889999999999988     8888764

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.95  E-value=1.4e-27  Score=232.52  Aligned_cols=228  Identities=21%  Similarity=0.239  Sum_probs=177.2

Q ss_pred             CCcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCc
Q 013230          133 DPENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA  201 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~  201 (447)
                      +|...++||+|+||.||+|.           .+|+|.+...        .......+.+|+.+++.++|        +| 
T Consensus         6 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~--------~~~~~~~~~~e~~~l~~l~h--------~~-   68 (280)
T cd05092           6 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA--------SESARQDFQREAELLTVLQH--------QH-   68 (280)
T ss_pred             hceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcC--------CHHHHHHHHHHHHHHhcCCC--------CC-
Confidence            45888999999999999984           2777765532        22234678999999999988        88 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------------
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------------  266 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------------  266 (447)
                         |+++++++..                              .+..|++|||+.+| +|.+++.               
T Consensus        69 ---i~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~i~~~~~~~~~~~~~~~~  114 (280)
T cd05092          69 ---IVRFYGVCTE------------------------------GRPLLMVFEYMRHG-DLNRFLRSHGPDAKILAGGEDV  114 (280)
T ss_pred             ---CceEEEEEec------------------------------CCceEEEEecCCCC-CHHHHHHhcCcchhhhcccccC
Confidence               9999988543                              45689999999988 8888763               


Q ss_pred             ----CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC
Q 013230          267 ----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT  342 (447)
Q Consensus       267 ----l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~  342 (447)
                          +++..++.++.||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+++...
T Consensus       115 ~~~~l~~~~~~~~~~qi~~al~~LH~-~~i~H~dlkp~nil~~~~~--------------------~~kL~dfg~~~~~~  173 (280)
T cd05092         115 APGQLTLGQMLAIASQIASGMVYLAS-LHFVHRDLATRNCLVGQGL--------------------VVKIGDFGMSRDIY  173 (280)
T ss_pred             CccccCHHHHHHHHHHHHHHHHHHHH-CCeecccccHhhEEEcCCC--------------------CEEECCCCceeEcC
Confidence                5778899999999999999999 9999999999999999876                    79999999997653


Q ss_pred             CCC-------EEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchH
Q 013230          343 GED-------IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDER  414 (447)
Q Consensus       343 ~~g-------~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~  414 (447)
                      ...       ......|++||.+.+...+...|+|+ +|++.+++++ +..|+............. .......+...++
T Consensus       174 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s-lG~il~el~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~  251 (280)
T cd05092         174 STDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWS-FGVVLWEIFTYGKQPWYQLSNTEAIECIT-QGRELERPRTCPP  251 (280)
T ss_pred             CCceeecCCCccccccccCHHHhccCCcCchhhHHH-HHHHHHHHHcCCCCCCccCCHHHHHHHHH-cCccCCCCCCCCH
Confidence            221       11123478999998877777889999 8999999998 778875543333222222 1223334456788


Q ss_pred             HHHHHHHHhcccc-----CHHHHHc
Q 013230          415 DLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       415 ~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      .+.+|+.+||+.|     +++|+++
T Consensus       252 ~~~~li~~cl~~~P~~Rp~~~~l~~  276 (280)
T cd05092         252 EVYAIMQGCWQREPQQRMVIKDIHS  276 (280)
T ss_pred             HHHHHHHHHccCChhhCCCHHHHHH
Confidence            9999999999999     8888764

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.95  E-value=1.2e-27  Score=232.37  Aligned_cols=227  Identities=20%  Similarity=0.226  Sum_probs=177.2

Q ss_pred             CCcceEEeccccceEEEEece----------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN----------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~----------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      +|++++.||+|+||.||+|..          +|+|......       .......+.+|+.++++++|        +|  
T Consensus         8 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~-------~~~~~~~~~~e~~~l~~l~h--------~~--   70 (279)
T cd05057           8 ELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREET-------SPKANKEILDEAYVMASVDH--------PH--   70 (279)
T ss_pred             HcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCC-------CHHHHHHHHHHHHHHHhCCC--------CC--
Confidence            358899999999999999862          7778765331       12344678899999999988        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHH
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLV  277 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~  277 (447)
                        |+++++++.                               ....++||||+.+| +|.+++.     +++..+..++.
T Consensus        71 --i~~~~~~~~-------------------------------~~~~~~v~e~~~~g-~L~~~l~~~~~~~~~~~~~~~~~  116 (279)
T cd05057          71 --VVRLLGICL-------------------------------SSQVQLITQLMPLG-CLLDYVRNHKDNIGSQYLLNWCV  116 (279)
T ss_pred             --cceEEEEEe-------------------------------cCceEEEEecCCCC-cHHHHHHhccCCCCHHHHHHHHH
Confidence              999998843                               14589999999988 9998875     78999999999


Q ss_pred             HHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-EE------EEe
Q 013230          278 QVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-IF------FLD  350 (447)
Q Consensus       278 Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-~i------~~~  350 (447)
                      ||+.||+|||+ +||+||||||+|||++.++                    .+||+|||+++...... +.      ...
T Consensus       117 qi~~~l~~LH~-~~i~H~di~p~nil~~~~~--------------------~~kL~dfg~~~~~~~~~~~~~~~~~~~~~  175 (279)
T cd05057         117 QIAKGMSYLEE-KRLVHRDLAARNVLVKTPQ--------------------HVKITDFGLAKLLDVDEKEYHAEGGKVPI  175 (279)
T ss_pred             HHHHHHHHHHh-CCEEecccCcceEEEcCCC--------------------eEEECCCcccccccCcccceecCCCcccc
Confidence            99999999999 9999999999999999887                    79999999998754321 11      112


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc--
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d--  427 (447)
                      .|++||.+.+.......|+|+ +|.+.+++++ +..|+....... +...+.....++.+...+.++.+++.+||..|  
T Consensus       176 ~y~~PE~~~~~~~~~~~Di~s-lG~~l~el~~~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~  253 (279)
T cd05057         176 KWMALESILHRIYTHKSDVWS-YGVTVWELMTFGAKPYEGIPAVE-IPDLLEKGERLPQPPICTIDVYMVLVKCWMIDAE  253 (279)
T ss_pred             cccCHHHhhcCCcCchhhHHH-HHHHHHHHhcCCCCCCCCCCHHH-HHHHHhCCCCCCCCCCCCHHHHHHHHHHcCCChh
Confidence            378899887766677789999 9999999887 778876543322 23333333445555667889999999999998  


Q ss_pred             ---CHHHHH
Q 013230          428 ---SAKEAI  433 (447)
Q Consensus       428 ---sa~elL  433 (447)
                         |+.+++
T Consensus       254 ~Rp~~~~l~  262 (279)
T cd05057         254 SRPTFKELI  262 (279)
T ss_pred             hCCCHHHHH
Confidence               666654

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.95  E-value=5.2e-28  Score=229.98  Aligned_cols=212  Identities=17%  Similarity=0.159  Sum_probs=162.7

Q ss_pred             ccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEEEEeC
Q 013230          143 GTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQG  216 (447)
Q Consensus       143 G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~~~~g  216 (447)
                      |.||.||+|++      +|+|.+....             ...+|...+....|        ||    |+++++++..  
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~-------------~~~~~~~~~~~~~~--------~~----i~~~~~~~~~--   56 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS-------------EYSRERLTIIPHCV--------PN----MVCLHKYIVS--   56 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh-------------hhhhHHHHHHhcCC--------Cc----eeehhhheec--
Confidence            89999999985      9999887432             12334444444444        55    9999988532  


Q ss_pred             CCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHHHHhCCe
Q 013230          217 PYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVAEAAYEF  292 (447)
Q Consensus       217 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~ylH~~~~i  292 (447)
                                                  .+..|++|||+.|| +|.+++.    +++..+..++.|++.||+|||+ .||
T Consensus        57 ----------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~l~~~~~~~~~~ql~~~l~~lH~-~~i  106 (237)
T cd05576          57 ----------------------------EDSVFLVLQHAEGG-KLWSHISKFLNIPEECVKRWAAEMVVALDALHR-EGI  106 (237)
T ss_pred             ----------------------------CCeEEEEEecCCCC-CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh-CCe
Confidence                                        56799999999988 8988765    8999999999999999999999 999


Q ss_pred             eeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC--EEEEecCCCCCCCCCCCCCchHHHH
Q 013230          293 EHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED--IFFLDLSQDPELFSGPKGDKQFDTY  370 (447)
Q Consensus       293 iHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g--~i~~~~~~~pelf~g~~~~~~~di~  370 (447)
                      +||||||+||+++.++                    .++|+|||++.......  ......|++||.+.+...+...|+|
T Consensus       107 ~H~dlkp~Nil~~~~~--------------------~~~l~df~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dvw  166 (237)
T cd05576         107 VCRDLNPNNILLDDRG--------------------HIQLTYFSRWSEVEDSCDGEAVENMYCAPEVGGISEETEACDWW  166 (237)
T ss_pred             eccCCCHHHEEEcCCC--------------------CEEEecccchhccccccccCCcCccccCCcccCCCCCCchhhHH
Confidence            9999999999999987                    79999999886654431  1223458899988776667777999


Q ss_pred             HhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C-----HHHHHcCCCC
Q 013230          371 RKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S-----AKEAIFDPFF  438 (447)
Q Consensus       371 s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s-----a~elL~HPff  438 (447)
                      + +|.+.+++++|..|+.....      .......+..+..+++++++||.+||+.|     |     ++|+++||||
T Consensus       167 s-lG~il~el~~g~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~h~~~  237 (237)
T cd05576         167 S-LGAILFELLTGKTLVECHPS------GINTHTTLNIPEWVSEEARSLLQQLLQFNPTERLGAGVAGVEDIKSHPFF  237 (237)
T ss_pred             H-HHHHHHHHHHCcchhhcCch------hcccccccCCcccCCHHHHHHHHHHccCCHHHhcCCCccchHHHHcCCCC
Confidence            9 89999999988766532110      00001122334567899999999999999     4     4999999998

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.95  E-value=1.1e-27  Score=228.58  Aligned_cols=225  Identities=22%  Similarity=0.275  Sum_probs=178.6

Q ss_pred             EEeccccceEEEEece---------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          138 VKVGEGTFGEAFLAGN---------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~~---------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      +.||+|+||.||+|..         +|+|++.....       ....+.+.+|+.+++.++|        +|    |+++
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~-------~~~~~~~~~e~~~l~~~~~--------~~----i~~~   61 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDAS-------EEERKDFLKEARVMKKLGH--------PN----VVRL   61 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccc-------hhHHHHHHHHHHHHhhcCC--------CC----hhee
Confidence            4699999999999863         68887764321       1135678999999999987        78    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------------CCHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------------LNINEARSL  275 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------------l~~~~~~~i  275 (447)
                      ++++..                              ...++++|||+.+| +|.+++.             +++..++.+
T Consensus        62 ~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~~~~~  110 (262)
T cd00192          62 LGVCTE------------------------------EEPLYLVLEYMEGG-DLLDYLRKSRPVFPSPEKSTLSLKDLLSF  110 (262)
T ss_pred             eeeecC------------------------------CCceEEEEEeccCC-cHHHHHhhccccccccccccCCHHHHHHH
Confidence            998432                              56799999999988 9888763             589999999


Q ss_pred             HHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-------EEE
Q 013230          276 LVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-------IFF  348 (447)
Q Consensus       276 ~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-------~i~  348 (447)
                      +.|++.||+|||+ .||+||||||+||+++.++                    .+||+|||.++.....+       ...
T Consensus       111 ~~~l~~al~~lH~-~~i~H~di~p~nili~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~  169 (262)
T cd00192         111 AIQIAKGMEYLAS-KKFVHRDLAARNCLVGEDL--------------------VVKISDFGLSRDVYDDDYYRKKTGGKL  169 (262)
T ss_pred             HHHHHHHHHHHHc-CCcccCccCcceEEECCCC--------------------cEEEcccccccccccccccccccCCCc
Confidence            9999999999999 9999999999999999987                    79999999998765432       122


Q ss_pred             EecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc
Q 013230          349 LDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       349 ~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d  427 (447)
                      ...|++||.+.+.....+.|+|+ +|.+.+++++ |..|+............. .....+.+...+.++.+++.+||+.|
T Consensus       170 ~~~y~aPE~~~~~~~~~~~Di~s-lG~il~~l~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~  247 (262)
T cd00192         170 PIRWMAPESLKDGIFTSKSDVWS-FGVLLWEIFTLGATPYPGLSNEEVLEYLR-KGYRLPKPEYCPDELYELMLSCWQLD  247 (262)
T ss_pred             CccccCHHHhccCCcchhhccHH-HHHHHHHHHhcCCCCCCCCCHHHHHHHHH-cCCCCCCCccCChHHHHHHHHHccCC
Confidence            33478999998876677779999 9999999998 477776653333333222 23344445667899999999999998


Q ss_pred             -----CHHHHHcC
Q 013230          428 -----SAKEAIFD  435 (447)
Q Consensus       428 -----sa~elL~H  435 (447)
                           |+.|+++|
T Consensus       248 p~~Rps~~~l~~~  260 (262)
T cd00192         248 PEDRPTFSELVER  260 (262)
T ss_pred             cccCcCHHHHHHh
Confidence                 99999875

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.95  E-value=2.4e-27  Score=226.84  Aligned_cols=228  Identities=19%  Similarity=0.259  Sum_probs=177.3

Q ss_pred             CCcceEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          133 DPENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      +|++.+.||+|+||.||+|.     .+|+|.+....         .....+.+|+.++++++|        ||    +++
T Consensus         5 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~---------~~~~~~~~e~~~l~~l~~--------~~----i~~   63 (256)
T cd05112           5 ELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGA---------MSEEDFIEEAQVMMKLSH--------PK----LVQ   63 (256)
T ss_pred             HeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCC---------CCHHHHHHHHHHHHhCCC--------CC----eee
Confidence            45889999999999999985     38889776331         123567899999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++..                              ....|+||||+.+| +|.+++.     +++..++.++.|++.|
T Consensus        64 ~~~~~~~------------------------------~~~~~~v~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~l~~~  112 (256)
T cd05112          64 LYGVCTE------------------------------RSPICLVFEFMEHG-CLSDYLRAQRGKFSQETLLGMCLDVCEG  112 (256)
T ss_pred             EEEEEcc------------------------------CCceEEEEEcCCCC-cHHHHHHhCccCCCHHHHHHHHHHHHHH
Confidence            9988532                              45689999999988 8988874     7889999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------CEEEEecCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------DIFFLDLSQDPE  356 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g~i~~~~~~~pe  356 (447)
                      |+|||+ .+++||||||+||+++.++                    .+||+|||+++.....      +..+..-|++||
T Consensus       113 l~~lH~-~~i~h~dl~p~ni~i~~~~--------------------~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~aPe  171 (256)
T cd05112         113 MAYLES-SNVIHRDLAARNCLVGENQ--------------------VVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPE  171 (256)
T ss_pred             HHHHHH-CCccccccccceEEEcCCC--------------------eEEECCCcceeecccCcccccCCCccchhhcCHh
Confidence            999999 9999999999999999876                    7999999999865332      111222378999


Q ss_pred             CCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      .+.+.....+.|+|+ +|.+.++++. +..|+........... +........+...+.++.+|+.+||..+     |+.
T Consensus       172 ~~~~~~~~~~~Dv~s-lG~~l~el~~~g~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~  249 (256)
T cd05112         172 VFSFSKYSSKSDVWS-FGVLMWEVFSEGKTPYENRSNSEVVET-INAGFRLYKPRLASQSVYELMQHCWKERPEDRPSFS  249 (256)
T ss_pred             HhccCCcChHHHHHH-HHHHHHHHHcCCCCCCCcCCHHHHHHH-HhCCCCCCCCCCCCHHHHHHHHHHcccChhhCCCHH
Confidence            998777777789999 9999999987 7788754332222222 2111122233456889999999999998     999


Q ss_pred             HHHcC
Q 013230          431 EAIFD  435 (447)
Q Consensus       431 elL~H  435 (447)
                      |++++
T Consensus       250 ~~l~~  254 (256)
T cd05112         250 LLLHQ  254 (256)
T ss_pred             HHHHh
Confidence            99864

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.95  E-value=2e-27  Score=226.54  Aligned_cols=224  Identities=22%  Similarity=0.251  Sum_probs=172.5

Q ss_pred             EEeccccceEEEEece-----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEE
Q 013230          138 VKVGEGTFGEAFLAGN-----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIK  212 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~~-----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~  212 (447)
                      +.||+|+||.||+|..     +|+|.+...       ..+.....+.+|+.+++.++|        ||    |+++++++
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~-------~~~~~~~~~~~e~~~l~~l~h--------~~----i~~~~~~~   61 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKED-------LPQELKIKFLSEARILKQYDH--------PN----IVKLIGVC   61 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCc-------CCHHHHHHHHHHHHHHHhCCC--------CC----cCeEEEEE
Confidence            3689999999999963     888876532       122233568899999999988        88    99999985


Q ss_pred             EEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHHHHHHH
Q 013230          213 VCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAGLAVAE  287 (447)
Q Consensus       213 ~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~gL~ylH  287 (447)
                      ..                              .+..++||||+.+| +|.+++.     +++..+..++.|++.||.|+|
T Consensus        62 ~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH  110 (250)
T cd05085          62 TQ------------------------------RQPIYIVMELVPGG-DFLSFLRKKKDELKTKQLVKFALDAAAGMAYLE  110 (250)
T ss_pred             ec------------------------------CCccEEEEECCCCC-cHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            43                              45689999999988 9988875     788999999999999999999


Q ss_pred             HhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----E-EEEecCCCCCCCCCC
Q 013230          288 AAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----I-FFLDLSQDPELFSGP  361 (447)
Q Consensus       288 ~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~-i~~~~~~~pelf~g~  361 (447)
                      + .|++||||||+||+++.++                    .+||+|||+++......     . .....|++||.+.+.
T Consensus       111 ~-~~~~H~dl~p~nili~~~~--------------------~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  169 (250)
T cd05085         111 S-KNCIHRDLAARNCLVGENN--------------------VLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYG  169 (250)
T ss_pred             h-CCeeecccChheEEEcCCC--------------------eEEECCCccceeccccccccCCCCCCcccccCHHHhccC
Confidence            9 9999999999999999887                    79999999997643321     0 011237899998877


Q ss_pred             CCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          362 KGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       362 ~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      ....+.|+|+ +|.+.+++++ +..|+............. .......+...+.++.+|+.+||..+     |+.|+++
T Consensus       170 ~~~~~~Di~s-lG~ll~~~~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  246 (250)
T cd05085         170 RYSSESDVWS-YGILLWETFSLGVCPYPGMTNQQAREQVE-KGYRMSCPQKCPDDVYKVMQRCWDYKPENRPKFSELQK  246 (250)
T ss_pred             CCCchhHHHH-HHHHHHHHhcCCCCCCCCCCHHHHHHHHH-cCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHH
Confidence            7777789999 8999999987 777875433222222221 11222334557899999999999998     8888865

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.95  E-value=1.9e-27  Score=230.07  Aligned_cols=223  Identities=17%  Similarity=0.183  Sum_probs=169.7

Q ss_pred             EeccccceEEEEece--------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCcccceeeee
Q 013230          139 KVGEGTFGEAFLAGN--------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTTFVEMF  209 (447)
Q Consensus       139 ~LG~G~fG~V~~a~~--------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~iv~l~  209 (447)
                      .||+|+||.||+|+.        +|+|.+...       ......+.+.+|+.++.++ +|        ||    |++++
T Consensus         2 ~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~-------~~~~~~~~~~~E~~~l~~l~~h--------~~----iv~~~   62 (270)
T cd05047           2 VIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY-------ASKDDHRDFAGELEVLCKLGHH--------PN----IINLL   62 (270)
T ss_pred             cCCCCCCceEEEEEEcCCCCeeEEEEEEcccc-------CCHHHHHHHHHHHHHHHhhccC--------CC----eeeEE
Confidence            589999999999962        577766522       1122345678999999999 55        67    99999


Q ss_pred             eEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------------------CCH
Q 013230          210 EIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------------------LNI  269 (447)
Q Consensus       210 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------------------l~~  269 (447)
                      +++..                              .+..|+||||+.+| +|.+++.                    +++
T Consensus        63 ~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~  111 (270)
T cd05047          63 GACEH------------------------------RGYLYLAIEYAPHG-NLLDFLRKSRVLETDPAFAIANSTASTLSS  111 (270)
T ss_pred             EEEec------------------------------CCCceEEEEeCCCC-cHHHHHHhccccccccccccccCCcCCCCH
Confidence            98543                              45689999999988 9988863                    578


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--C--
Q 013230          270 NEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--D--  345 (447)
Q Consensus       270 ~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--g--  345 (447)
                      ..++.++.|++.||+|||+ +|++||||||+|||++.++                    .+||+|||+++.....  .  
T Consensus       112 ~~~~~~~~~i~~al~~lH~-~~i~H~dikp~nili~~~~--------------------~~kl~dfgl~~~~~~~~~~~~  170 (270)
T cd05047         112 QQLLHFAADVARGMDYLSQ-KQFIHRDLAARNILVGENY--------------------VAKIADFGLSRGQEVYVKKTM  170 (270)
T ss_pred             HHHHHHHHHHHHHHHHHHH-CCEeecccccceEEEcCCC--------------------eEEECCCCCccccchhhhccC
Confidence            8999999999999999999 9999999999999999887                    7999999998633211  0  


Q ss_pred             EEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhc
Q 013230          346 IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLD  424 (447)
Q Consensus       346 ~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL  424 (447)
                      ......|++||.+.+...+.+.|+|+ +|.+.+++++ +..|+............. .....+.+...+.++.+|+.+|+
T Consensus       171 ~~~~~~y~apE~~~~~~~~~~~Di~s-lG~il~el~~~g~~pf~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l  248 (270)
T cd05047         171 GRLPVRWMAIESLNYSVYTTNSDVWS-YGVLLWEIVSLGGTPYCGMTCAELYEKLP-QGYRLEKPLNCDDEVYDLMRQCW  248 (270)
T ss_pred             CCCccccCChHHHccCCCCchhhHHH-HHHHHHHHHcCCCCCccccCHHHHHHHHh-CCCCCCCCCcCCHHHHHHHHHHc
Confidence            01112378999987777777789999 9999999996 888875543333222222 12233334557889999999999


Q ss_pred             ccc-----CHHHHHc
Q 013230          425 KYN-----SAKEAIF  434 (447)
Q Consensus       425 ~~d-----sa~elL~  434 (447)
                      ..|     |+.++++
T Consensus       249 ~~~p~~Rps~~~il~  263 (270)
T cd05047         249 REKPYERPSFAQILV  263 (270)
T ss_pred             ccChhhCCCHHHHHH
Confidence            999     8888875

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.95  E-value=1.8e-27  Score=227.82  Aligned_cols=224  Identities=20%  Similarity=0.207  Sum_probs=175.8

Q ss_pred             EEeccccceEEEEec---------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          138 VKVGEGTFGEAFLAG---------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~---------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      +.||+|+||.||+|.         .+|+|.+.....       ....+.+.+|+.++++++|        +|    |+++
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~-------~~~~~~~~~e~~~l~~l~h--------~~----iv~~   61 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKL-------SDIMDDFLKEAAIMHSLDH--------EN----LIRL   61 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCccc-------HHHHHHHHHHHHHHhhcCC--------CC----ccce
Confidence            468999999999986         278888765421       1445678999999999998        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAG  282 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~g  282 (447)
                      ++.+.                              . ..+++||||+.+| +|.+++.      +++..++.++.|++.|
T Consensus        62 ~~~~~------------------------------~-~~~~~v~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~qi~~~  109 (257)
T cd05040          62 YGVVL------------------------------T-HPLMMVTELAPLG-SLLDRLRKDALGHFLISTLCDYAVQIANG  109 (257)
T ss_pred             eEEEc------------------------------C-CeEEEEEEecCCC-cHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence            98843                              2 5689999999988 9988874      6889999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE--------EEEecCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI--------FFLDLSQD  354 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~--------i~~~~~~~  354 (447)
                      |+|||+ .|++||||||+|||++.++                    .+||+|||+++.....+-        .....|++
T Consensus       110 L~~lH~-~~i~H~di~p~nil~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~  168 (257)
T cd05040         110 MRYLES-KRFIHRDLAARNILLASDD--------------------KVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCA  168 (257)
T ss_pred             HHHHHh-CCccccccCcccEEEecCC--------------------EEEeccccccccccccccceecccCCCCCceecC
Confidence            999999 9999999999999999987                    799999999987644211        11123788


Q ss_pred             CCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C
Q 013230          355 PELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S  428 (447)
Q Consensus       355 pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s  428 (447)
                      ||.+.+...+.+.|+|+ +|.+.+++++ |..|+...................+.+...+..+.+++.+||..+     |
T Consensus       169 pE~~~~~~~~~~~Di~s-lG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps  247 (257)
T cd05040         169 PESLRTRTFSHASDVWM-FGVTLWEMFTYGEEPWAGLSGSQILKKIDKEGERLERPEACPQDIYNVMLQCWAHNPADRPT  247 (257)
T ss_pred             HHHhcccCcCchhhhHH-HHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCcCCCCccCCHHHHHHHHHHCCCCcccCCC
Confidence            99888777777789999 8999999998 888875443333333332222334444567889999999999999     8


Q ss_pred             HHHHHc
Q 013230          429 AKEAIF  434 (447)
Q Consensus       429 a~elL~  434 (447)
                      ++++++
T Consensus       248 ~~~~~~  253 (257)
T cd05040         248 FAALRE  253 (257)
T ss_pred             HHHHHH
Confidence            888764

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.95  E-value=1.6e-27  Score=231.51  Aligned_cols=232  Identities=24%  Similarity=0.288  Sum_probs=173.5

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhcc-ccccCCCCCCCccccee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN-HLRRNEGDTLNACTTFV  206 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~n~~~~iv  206 (447)
                      |++.+.||+|+||.||+|+.      +|+|.+.....       ........+|+..+++++ |        +|    ++
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~-------~~~~~~~~~e~~~l~~~~~h--------~~----i~   61 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFY-------SWEECMNLREVKSLRKLNEH--------PN----IV   61 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhcc-------chhHHHHHHHHHHHHhccCC--------CC----ch
Confidence            57889999999999999973      88998764321       111223467899999888 6        77    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVT  280 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil  280 (447)
                      ++++++.                              .++..|+||||+ +| +|.+++.      +++..+..++.|++
T Consensus        62 ~~~~~~~------------------------------~~~~~~lv~e~~-~~-~l~~~~~~~~~~~~~~~~~~~~~~~l~  109 (283)
T cd07830          62 KLKEVFR------------------------------ENDELYFVFEYM-EG-NLYQLMKDRKGKPFSESVIRSIIYQIL  109 (283)
T ss_pred             hHHHHhh------------------------------cCCcEEEEEecC-CC-CHHHHHHhcccccCCHHHHHHHHHHHH
Confidence            9998843                              256799999999 57 7877664      68999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDPE  356 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~pe  356 (447)
                      .||.|||+ +|++|+||||+||+++.++                    .++|+|||+++.....    ..+....|++||
T Consensus       110 ~~l~~Lh~-~~i~H~dl~~~ni~i~~~~--------------------~~~l~d~~~~~~~~~~~~~~~~~~~~~~~aPE  168 (283)
T cd07830         110 QGLAHIHK-HGFFHRDLKPENLLVSGPE--------------------VVKIADFGLAREIRSRPPYTDYVSTRWYRAPE  168 (283)
T ss_pred             HHHHHHHH-CCcccCCCChhhEEEcCCC--------------------CEEEeecccceeccCCCCcCCCCCcccccCce
Confidence            99999999 9999999999999999987                    7999999999876543    223344578999


Q ss_pred             CCCCC-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh--h-----------------ccCCCC--------
Q 013230          357 LFSGP-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL--L-----------------KKTFDR--------  408 (447)
Q Consensus       357 lf~g~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~--~-----------------~~~~~~--------  408 (447)
                      .+.+. ....+.|+|+ +|.+.++++++..|+..........+...  .                 ...++.        
T Consensus       169 ~~~~~~~~~~~~Di~s-~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (283)
T cd07830         169 ILLRSTSYSSPVDIWA-LGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAPTSLHQ  247 (283)
T ss_pred             eeecCcCcCCccchhh-HHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhhccccccccccccccHHH
Confidence            87543 3455679999 89999999999877643322111111100  0                 000000        


Q ss_pred             -CccchHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          409 -SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       409 -~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                       ....+.++++||++||+.|     |++|++.||||
T Consensus       248 ~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~~~~  283 (283)
T cd07830         248 LIPNASPEAIDLIKDMLRWDPKKRPTASQALQHPYF  283 (283)
T ss_pred             HcccCCHHHHHHHHHhcccCcccCCCHHHHhhCCCC
Confidence             0123688999999999998     99999999998

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.95  E-value=1.2e-27  Score=233.39  Aligned_cols=229  Identities=21%  Similarity=0.215  Sum_probs=176.2

Q ss_pred             CCcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCc
Q 013230          133 DPENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA  201 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~  201 (447)
                      +|+.++.||+|+||.||+|+           .+|+|++....       .......+.+|+.++++++|        || 
T Consensus         6 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~-------~~~~~~~~~~ei~~l~~l~h--------~~-   69 (288)
T cd05050           6 NIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA-------SADMQADFQREAALMAEFDH--------PN-   69 (288)
T ss_pred             hceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCc-------CHHHHHHHHHHHHHHHhcCC--------Cc-
Confidence            46999999999999999985           27888775331       11233568889999999988        88 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------------
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------------  266 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------------  266 (447)
                         |+++++++..                              ....|++|||+.+| +|.+++.               
T Consensus        70 ---iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~  115 (288)
T cd05050          70 ---IVKLLGVCAV------------------------------GKPMCLLFEYMAYG-DLNEFLRHRSPRAQCSLSHSTS  115 (288)
T ss_pred             ---hheEEEEEcC------------------------------CCccEEEEecCCCC-CHHHHHHHcCcccccccccccc
Confidence               9999988432                              45689999999988 9988874               


Q ss_pred             -----------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeec
Q 013230          267 -----------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDF  335 (447)
Q Consensus       267 -----------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DF  335 (447)
                                 +++..+..++.||+.||.|||+ .|++||||||+|||++.++                    .++|+||
T Consensus       116 ~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~-~~i~H~dl~p~nil~~~~~--------------------~~~l~df  174 (288)
T cd05050         116 SARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSE-RKFVHRDLATRNCLVGENM--------------------VVKIADF  174 (288)
T ss_pred             ccccccccccccCHHHHHHHHHHHHHHHHHHHh-CCeecccccHhheEecCCC--------------------ceEECcc
Confidence                       4677889999999999999999 9999999999999999887                    7999999


Q ss_pred             cceeecCCC-------CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCC
Q 013230          336 TLSRINTGE-------DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFD  407 (447)
Q Consensus       336 Gla~~~~~~-------g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~  407 (447)
                      |+++.....       .......|++||.+.+.....+.|+|+ +|.+.+++++ +..|+........... +.....++
T Consensus       175 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s-lG~il~el~~~~~~p~~~~~~~~~~~~-~~~~~~~~  252 (288)
T cd05050         175 GLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWA-YGVVLWEIFSYGMQPYYGMAHEEVIYY-VRDGNVLS  252 (288)
T ss_pred             ccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHH-HHHHHHHHHhCCCCCCCCCCHHHHHHH-HhcCCCCC
Confidence            998764322       111122378899888777777789999 8999999986 6667754333222222 22223334


Q ss_pred             CCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          408 RSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       408 ~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      .+...+.++.+|+.+||+.|     |+.|+++
T Consensus       253 ~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~  284 (288)
T cd05050         253 CPDNCPLELYNLMRLCWSKLPSDRPSFASINR  284 (288)
T ss_pred             CCCCCCHHHHHHHHHHcccCcccCCCHHHHHH
Confidence            45567899999999999998     8888764

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.95  E-value=3.3e-27  Score=225.21  Aligned_cols=224  Identities=21%  Similarity=0.247  Sum_probs=174.9

Q ss_pred             EEeccccceEEEEece-----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEE
Q 013230          138 VKVGEGTFGEAFLAGN-----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIK  212 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~~-----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~  212 (447)
                      ++||+|+||.||+|.+     +|+|.+.....       ......+.+|+.+++.++|        +|    |+++++++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~-------~~~~~~~~~e~~~l~~l~~--------~~----i~~~~~~~   61 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLP-------PDLKRKFLQEAEILKQYDH--------PN----IVKLIGVC   61 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCC-------HHHHHHHHHHHHHHHhCCC--------CC----eEEEEEEE
Confidence            4699999999999863     89997764321       1234678999999999988        88    99999885


Q ss_pred             EEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHHHHHHH
Q 013230          213 VCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAGLAVAE  287 (447)
Q Consensus       213 ~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~gL~ylH  287 (447)
                      ..                              .+..|+||||+.+| +|.+++.     ++...+..++.|++.||+|||
T Consensus        62 ~~------------------------------~~~~~~v~e~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH  110 (251)
T cd05041          62 VQ------------------------------KQPIYIVMELVPGG-SLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLE  110 (251)
T ss_pred             ec------------------------------CCCeEEEEEcCCCC-cHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            32                              56689999999977 9988874     788999999999999999999


Q ss_pred             HhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-------EEEecCCCCCCCCC
Q 013230          288 AAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-------FFLDLSQDPELFSG  360 (447)
Q Consensus       288 ~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-------i~~~~~~~pelf~g  360 (447)
                      + ++++||||||+|||++.++                    .+||+|||+++.......       .....|++||.+.+
T Consensus       111 ~-~~i~h~di~p~nili~~~~--------------------~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~  169 (251)
T cd05041         111 S-KNCIHRDLAARNCLVGENN--------------------VLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNY  169 (251)
T ss_pred             h-CCEehhhcCcceEEEcCCC--------------------cEEEeeccccccccCCcceeccccCcceeccCChHhhcc
Confidence            9 9999999999999999887                    799999999986542211       11233789999988


Q ss_pred             CCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      .......|+|+ +|.+.+++++ +..|+....... ....+......+.+...+.++.+++.+||+.+     |+.|+++
T Consensus       170 ~~~~~~~Di~s-lG~i~~~l~t~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~ell~  247 (251)
T cd05041         170 GRYTSESDVWS-YGILLWETFSLGDTPYPGMSNQQ-TRERIESGYRMPAPQLCPEEIYRLMLQCWAYDPENRPSFSEIYN  247 (251)
T ss_pred             CCCCcchhHHH-HHHHHHHHHhccCCCCccCCHHH-HHHHHhcCCCCCCCccCCHHHHHHHHHHhccChhhCcCHHHHHH
Confidence            77777789999 8999999997 667765432211 22222222233445567899999999999998     9999885

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.95  E-value=1.5e-27  Score=238.72  Aligned_cols=241  Identities=22%  Similarity=0.281  Sum_probs=179.1

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCccccee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~iv  206 (447)
                      |++.+.||+|+||.||+|.+      +|+|++.....      .......+.+|+.+++++ +|        +|    |+
T Consensus         9 y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~------~~~~~~~~~~E~~~l~~l~~h--------~n----i~   70 (337)
T cd07852           9 YEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFR------NATDAQRTFREIMFLQELGDH--------PN----IV   70 (337)
T ss_pred             HHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccC------cchhhhhhhHHHHHHHHhcCC--------CC----cc
Confidence            48899999999999999963      89997753211      112234567899999999 77        77    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGL  283 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL  283 (447)
                      ++++++...                            ....+|+||||+. | +|..++.   +++..++.++.||+.||
T Consensus        71 ~~~~~~~~~----------------------------~~~~~~lv~e~~~-~-~L~~~~~~~~~~~~~~~~i~~qi~~~L  120 (337)
T cd07852          71 KLLNVIKAE----------------------------NDKDIYLVFEYME-T-DLHAVIRANILEDVHKRYIMYQLLKAL  120 (337)
T ss_pred             ceeeeeccC----------------------------CCceEEEEecccc-c-CHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            999985321                            1345899999997 5 8888875   78999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------E----EEEecCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------I----FFLDLSQ  353 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------~----i~~~~~~  353 (447)
                      +|||+ .||+||||||+|||++.++                    .+||+|||+++......      +    +....|+
T Consensus       121 ~~LH~-~~i~H~dl~p~nill~~~~--------------------~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~  179 (337)
T cd07852         121 KYIHS-GNVIHRDLKPSNILLNSDC--------------------RVKLADFGLARSLSELEENPENPVLTDYVATRWYR  179 (337)
T ss_pred             HHHHH-CCeecCCCCHHHEEEcCCC--------------------cEEEeeccchhccccccccccCcchhccccccccc
Confidence            99999 9999999999999999987                    79999999998654321      1    1223478


Q ss_pred             CCCCCCCCC-CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHH----------------------HHhh----ccCC
Q 013230          354 DPELFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVD----------------------MLLL----KKTF  406 (447)
Q Consensus       354 ~pelf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~----------------------~l~~----~~~~  406 (447)
                      +||.+.+.. .....|+|+ +|.+.+++++|..|+...........                      .+..    ....
T Consensus       180 aPE~~~~~~~~~~~sDi~s-lG~~l~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (337)
T cd07852         180 APEILLGSTRYTKGVDMWS-VGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSRPRK  258 (337)
T ss_pred             CceeeeccccccccchHHH-HHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhhhccccccc
Confidence            999876533 345569999 89999999999877743211111100                      0000    0000


Q ss_pred             ---CCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          407 ---DRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       407 ---~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                         ......+.++++||.+||+.|     |+.++++||||+++..+
T Consensus       259 ~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~~~~~~~~~~  304 (337)
T cd07852         259 PLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEHPYVAQFHNP  304 (337)
T ss_pred             chhhhccCCCHHHHHHHHHhccCCcccccCHHHHhhChhhhhhccC
Confidence               001236889999999999999     99999999999887543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.95  E-value=5.1e-29  Score=229.21  Aligned_cols=232  Identities=17%  Similarity=0.184  Sum_probs=181.8

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.++||+|+|+.||++++      +|+|.|....        ++..+..++|+...++++|        ||    +++
T Consensus        23 yri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~--------~~~~e~~~rEid~~rkf~s--------~~----vl~   82 (302)
T KOG2345|consen   23 YRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHS--------QEDIEEALREIDNHRKFNS--------PN----VLR   82 (302)
T ss_pred             EEEeeeecCCCceeeeeecccCcccchhhheeeccc--------hHHHHHHHHHHHHHHhhCC--------cc----hHH
Confidence            49999999999999999984      9999887542        3455788999999999999        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQV  279 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Qi  279 (447)
                      ++++.+..-                         .......||++.|...| +|.+.+.        +++.++..++.+|
T Consensus        83 l~dh~l~~~-------------------------~D~~~~~yll~Pyy~~G-sl~d~i~~~k~kg~~~sE~~iL~if~gi  136 (302)
T KOG2345|consen   83 LVDHQLREE-------------------------KDGKHEAYLLLPYYKRG-SLLDEIERLKIKGNFVSEAQILWIFLGI  136 (302)
T ss_pred             HHHHHHHhh-------------------------ccCceeEEEEeehhccc-cHHHHHHHHhhcCCccCHHHHHHHHHHH
Confidence            988732210                         00245699999999999 8888776        8999999999999


Q ss_pred             HHHHHHHHHhCC--eeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-------------
Q 013230          280 TAGLAVAEAAYE--FEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-------------  344 (447)
Q Consensus       280 l~gL~ylH~~~~--iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-------------  344 (447)
                      +.||++||+ ..  ++||||||.|||+...+                    .++|.|||.++...-.             
T Consensus       137 c~gL~~lH~-~~~~yAH~DiKP~NILls~~~--------------------~~vl~D~GS~~~a~i~i~~~~~a~~lQe~  195 (302)
T KOG2345|consen  137 CRGLEALHE-KEPPYAHRDIKPANILLSDSG--------------------LPVLMDLGSATQAPIQIEGSRQALRLQEW  195 (302)
T ss_pred             HHHHHHHhc-cCCcccccCCCcceeEecCCC--------------------ceEEEeccCccccceEeechHHHHHHHHH
Confidence            999999999 88  99999999999999977                    7999999998764221             


Q ss_pred             ---CEEEEecCCCCCCCCCCCC---CchHHHHHhhccCCcccccCCCCCChhHHHH--HHHHHHhhccCCCCCccchHHH
Q 013230          345 ---DIFFLDLSQDPELFSGPKG---DKQFDTYRKMKKVTEDQWEGSFPKTNVLWLV--YLVDMLLLKKTFDRSSKDERDL  416 (447)
Q Consensus       345 ---g~i~~~~~~~pelf~g~~~---~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~--~~~~~l~~~~~~~~~~~~s~~l  416 (447)
                         -|  .-.|++||+|.-+.+   +...|||+ +|++.+.+.-+..||....-.-  ....+...+-.+|....+|..+
T Consensus       196 a~e~C--t~pyRAPELf~vk~~~ti~ertDIWS-LGCtLYa~mf~~sPfe~~~~~GgSlaLAv~n~q~s~P~~~~yse~l  272 (302)
T KOG2345|consen  196 AEERC--TIPYRAPELFNVKSHCTITERTDIWS-LGCTLYAMMFGESPFERIYQQGGSLALAVQNAQISIPNSSRYSEAL  272 (302)
T ss_pred             HHHhC--CCcccCchheecccCcccccccchhh-hhHHHHHHHHcCCcchHHhhcCCeEEEeeeccccccCCCCCccHHH
Confidence               23  234899999965443   34569999 9999999999998986432100  0000111234567767799999


Q ss_pred             HHHHHHhcccc-----CHHHHHcC
Q 013230          417 RSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       417 ~dLl~~mL~~d-----sa~elL~H  435 (447)
                      ..||+.||+.|     ++.+++.+
T Consensus       273 ~~lik~mlqvdP~qRP~i~~ll~~  296 (302)
T KOG2345|consen  273 HQLIKSMLQVDPNQRPTIPELLSK  296 (302)
T ss_pred             HHHHHHHhcCCcccCCCHHHHHHH
Confidence            99999999999     88888764

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.95  E-value=1.8e-27  Score=231.30  Aligned_cols=228  Identities=15%  Similarity=0.136  Sum_probs=166.2

Q ss_pred             EeccccceEEEEece------------------------------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc
Q 013230          139 KVGEGTFGEAFLAGN------------------------------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL  188 (447)
Q Consensus       139 ~LG~G~fG~V~~a~~------------------------------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L  188 (447)
                      +||+|+||.||+|..                              ||+|++...        .......+.+|+.+++.+
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~--------~~~~~~~~~~~~~~~~~l   73 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPS--------HRDIALAFFETASLMSQV   73 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChH--------HHHHHHHHHHHHHHHhcC
Confidence            699999999999851                              667766422        112335678899999999


Q ss_pred             cccccCCCCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--
Q 013230          189 NHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--  266 (447)
Q Consensus       189 ~h~~~~~~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--  266 (447)
                      +|        ||    |+++++++..                              ....|+||||+.+| +|..++.  
T Consensus        74 ~h--------~n----iv~~~~~~~~------------------------------~~~~~lv~ey~~~g-~L~~~l~~~  110 (274)
T cd05076          74 SH--------IH----LAFVHGVCVR------------------------------GSENIMVEEFVEHG-PLDVCLRKE  110 (274)
T ss_pred             CC--------CC----eeeEEEEEEe------------------------------CCceEEEEecCCCC-cHHHHHHhc
Confidence            88        88    9999998543                              45689999999988 8988874  


Q ss_pred             ---CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCC
Q 013230          267 ---LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG  343 (447)
Q Consensus       267 ---l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~  343 (447)
                         +++..+..++.||+.||+|||+ .||+||||||+|||++..+..             ......+||+|||+++....
T Consensus       111 ~~~~~~~~~~~i~~qi~~~l~~lH~-~~iiH~dlkp~Nill~~~~~~-------------~~~~~~~kl~d~g~~~~~~~  176 (274)
T cd05076         111 KGRVPVAWKITVAQQLASALSYLED-KNLVHGNVCAKNILLARLGLA-------------EGTSPFIKLSDPGVSFTALS  176 (274)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHc-CCccCCCCCcccEEEeccCcc-------------cCccceeeecCCcccccccc
Confidence               7899999999999999999999 999999999999999875410             00011489999999865433


Q ss_pred             C-CEEEEecCCCCCCCCC-CCCCchHHHHHhhccCCcccc-cCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHH
Q 013230          344 E-DIFFLDLSQDPELFSG-PKGDKQFDTYRKMKKVTEDQW-EGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLK  420 (447)
Q Consensus       344 ~-g~i~~~~~~~pelf~g-~~~~~~~di~s~lg~~~~~~~-~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl  420 (447)
                      . .......|++||.+.+ ...+.+.|+|+ +|.+.++++ .+..|+....... ..........+  +...++++.++|
T Consensus       177 ~~~~~~~~~~~aPe~~~~~~~~~~~~Dv~s-lG~~l~el~~~g~~p~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~li  252 (274)
T cd05076         177 REERVERIPWIAPECVPGGNSLSTAADKWS-FGTTLLEICFDGEVPLKERTPSE-KERFYEKKHRL--PEPSCKELATLI  252 (274)
T ss_pred             ccccccCCcccCchhhcCCCCCCcHHHHHH-HHHHHHHHHhCCCCCccccChHH-HHHHHHhccCC--CCCCChHHHHHH
Confidence            2 1122234789998865 34556679999 899888875 5677775432211 11111111222  234567899999


Q ss_pred             HHhcccc-----CHHHHHcC
Q 013230          421 KRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       421 ~~mL~~d-----sa~elL~H  435 (447)
                      .+||..+     |++++|++
T Consensus       253 ~~cl~~~p~~Rps~~~il~~  272 (274)
T cd05076         253 SQCLTYEPTQRPSFRTILRD  272 (274)
T ss_pred             HHHcccChhhCcCHHHHHHh
Confidence            9999998     99999875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.95  E-value=3.2e-27  Score=227.11  Aligned_cols=225  Identities=21%  Similarity=0.235  Sum_probs=175.4

Q ss_pred             CCcceEEeccccceEEEEece-----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN-----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~-----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      +|++.++||+|+||.||+|..     +|+|.+....         ...+.+.+|+.+++.++|        +|    |++
T Consensus         7 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~---------~~~~~~~~e~~~l~~l~~--------~~----i~~   65 (260)
T cd05073           7 SLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS---------MSVEAFLAEANVMKTLQH--------DK----LVK   65 (260)
T ss_pred             ceeEEeEecCccceEEEEEEecCCccEEEEecCCCh---------hHHHHHHHHHHHHHhcCC--------CC----cce
Confidence            359999999999999999973     8888776321         123568899999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +++.+.                               ....|++|||+.+| +|.+++.      ++...+..++.||+.
T Consensus        66 ~~~~~~-------------------------------~~~~~~v~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~~l~~  113 (260)
T cd05073          66 LHAVVT-------------------------------KEPIYIITEFMAKG-SLLDFLKSDEGSKQPLPKLIDFSAQIAE  113 (260)
T ss_pred             EEEEEc-------------------------------CCCeEEEEEeCCCC-cHHHHHHhCCccccCHHHHHHHHHHHHH
Confidence            988742                               24589999999988 9998875      678889999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE------EEEecCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI------FFLDLSQDP  355 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~------i~~~~~~~p  355 (447)
                      ||.|||+ .|++||||||+||+++.++                    .+||+|||+++.......      .....|++|
T Consensus       114 aL~~lH~-~~i~H~dl~p~ni~i~~~~--------------------~~~l~d~~~~~~~~~~~~~~~~~~~~~~~y~~P  172 (260)
T cd05073         114 GMAFIEQ-RNYIHRDLRAANILVSASL--------------------VCKIADFGLARVIEDNEYTAREGAKFPIKWTAP  172 (260)
T ss_pred             HHHHHHh-CCccccccCcceEEEcCCC--------------------cEEECCCcceeeccCCCcccccCCcccccccCH
Confidence            9999999 9999999999999998886                    799999999976543221      112337899


Q ss_pred             CCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CH
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SA  429 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa  429 (447)
                      |.+.+.......|+|+ +|.+.+++++ |..|+.......... .+......+.+...+.++.+++.+||..+     ++
T Consensus       173 E~~~~~~~~~~~Di~s-lG~~l~~l~t~g~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~  250 (260)
T cd05073         173 EAINFGSFTIKSDVWS-FGILLMEIVTYGRIPYPGMSNPEVIR-ALERGYRMPRPENCPEELYNIMMRCWKNRPEERPTF  250 (260)
T ss_pred             hHhccCCcCccccchH-HHHHHHHHHhcCCCCCCCCCHHHHHH-HHhCCCCCCCcccCCHHHHHHHHHHcccCcccCcCH
Confidence            9998766666779999 8999999997 778876543322222 22222233445567889999999999988     76


Q ss_pred             HHHH
Q 013230          430 KEAI  433 (447)
Q Consensus       430 ~elL  433 (447)
                      .+++
T Consensus       251 ~~l~  254 (260)
T cd05073         251 EYIQ  254 (260)
T ss_pred             HHHH
Confidence            6664

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=5.9e-28  Score=230.07  Aligned_cols=242  Identities=18%  Similarity=0.170  Sum_probs=197.1

Q ss_pred             CCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccce
Q 013230          132 SDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~i  205 (447)
                      .+|.++..||+|+|++|.+++.      +|+|++++.-.   |  ..+..+=+..|-.+.....+           +|.+
T Consensus       250 ~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~---n--ddedidwvqtek~vfe~asn-----------~pfl  313 (593)
T KOG0695|consen  250 QDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELV---N--DDEDIDWVQTEKHVFEQASN-----------NPFL  313 (593)
T ss_pred             ccceeeeeecCcchhhhhheehcccceeeehhhHHHHhc---C--CcccchhHHhhHHHHHhccC-----------CCeE
Confidence            4569999999999999999973      99999876532   2  22233456677777776643           4559


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTA  281 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~  281 (447)
                      |.+..+                              +.++..+++|.||++|| +|--.++    ++++.++++...|+.
T Consensus       314 vglhsc------------------------------fqtesrlffvieyv~gg-dlmfhmqrqrklpeeharfys~ei~l  362 (593)
T KOG0695|consen  314 VGLHSC------------------------------FQTESRLFFVIEYVNGG-DLMFHMQRQRKLPEEHARFYSAEICL  362 (593)
T ss_pred             Eehhhh------------------------------hcccceEEEEEEEecCc-ceeeehhhhhcCcHHHhhhhhHHHHH
Confidence            999988                              45688999999999999 7765544    999999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE-----EEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF-----FLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i-----~~~~~~~pe  356 (447)
                      ||.|||+ .|||.||||.+|+|++..+                    ++||+|||+++..-.+|-.     ...-|.+||
T Consensus       363 al~flh~-rgiiyrdlkldnvlldaeg--------------------hikltdygmcke~l~~gd~tstfcgtpnyiape  421 (593)
T KOG0695|consen  363 ALNFLHE-RGIIYRDLKLDNVLLDAEG--------------------HIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPE  421 (593)
T ss_pred             HHHHHhh-cCeeeeeccccceEEccCC--------------------ceeecccchhhcCCCCCcccccccCCCcccchh
Confidence            9999999 9999999999999999998                    8999999999987666532     234489999


Q ss_pred             CCCCCCCCchHHHHHhhccCCcccccCCCCCChh-------HHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc--
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV-------LWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~-------~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d--  427 (447)
                      +..|..+...+|.|+ +|+...+|..|..||.-+       ....|+.++++.+ ....|..+|..+-..++..|.+|  
T Consensus       422 ilrgeeygfsvdwwa-lgvlmfemmagrspfdivgm~n~d~ntedylfqvilek-qiriprslsvkas~vlkgflnkdp~  499 (593)
T KOG0695|consen  422 ILRGEEYGFSVDWWA-LGVLMFEMMAGRSPFDIVGMDNPDMNTEDYLFQVILEK-QIRIPRSLSVKASHVLKGFLNKDPK  499 (593)
T ss_pred             hhcccccCceehHHH-HHHHHHHHHcCCCCcceecCCCcccchhHHHHHHHhhh-cccccceeehhhHHHHHHhhcCCcH
Confidence            999998888889999 999999999999888532       3445777776543 44455678888999999999999  


Q ss_pred             ---------CHHHHHcCCCCCCCCC
Q 013230          428 ---------SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       428 ---------sa~elL~HPff~~~~~  443 (447)
                               ...++..||||+.+.+
T Consensus       500 erlgc~~~~g~~dik~h~ffr~idw  524 (593)
T KOG0695|consen  500 ERLGCRPQTGFSDIKSHAFFRSIDW  524 (593)
T ss_pred             HhcCCCcccchhhhhcchhhhhCCH
Confidence                     6889999999997654

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.95  E-value=2.4e-27  Score=228.91  Aligned_cols=223  Identities=19%  Similarity=0.185  Sum_probs=162.7

Q ss_pred             EeccccceEEEEec--------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeee
Q 013230          139 KVGEGTFGEAFLAG--------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       139 ~LG~G~fG~V~~a~--------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      +||+|+||.||+|.        .+|+|.+...       ........+.+|+.+++.++|        +|    |+++++
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~-------~~~~~~~~~~~e~~~~~~l~h--------~n----ii~~~~   62 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRAS-------ATPDEQLLFLQEVQPYRELNH--------PN----VLQCLG   62 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCcc-------CChHHHHHHHHHHHHHHhCCC--------CC----cceEEE
Confidence            69999999999985        2566655422       122233567899999999988        88    999999


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------CCHHHHHHHHHHHHH
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------LNINEARSLLVQVTA  281 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------l~~~~~~~i~~Qil~  281 (447)
                      .+..                              ...+|+||||+.+| +|.+++.         +++..++.++.||+.
T Consensus        63 ~~~~------------------------------~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~  111 (269)
T cd05042          63 QCIE------------------------------SIPYLLVLEFCPLG-DLKNYLRSNRGMVAQMAQKDVLQRMACEVAS  111 (269)
T ss_pred             EECC------------------------------CCceEEEEEeCCCC-cHHHHHHhccccccccccHHHHHHHHHHHHH
Confidence            8432                              45699999999988 9999875         357788999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------E-EEEecCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------I-FFLDLSQD  354 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------~-i~~~~~~~  354 (447)
                      ||+|||+ +||+||||||+|||++.++                    .+||+|||+++.....+      + .....|++
T Consensus       112 ~l~~lH~-~~ivH~dlkp~Nill~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~a  170 (269)
T cd05042         112 GLLWLHQ-ADFIHSDLALRNCQLTADL--------------------SVKIGDYGLALEQYPEDYYITKDCHAVPLRWLA  170 (269)
T ss_pred             HHHHHHh-cCEecccccHhheEecCCC--------------------cEEEeccccccccccchheeccCCCCCcccccC
Confidence            9999999 9999999999999999987                    79999999987643221      1 11223788


Q ss_pred             CCCCCC-------CCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhc-cCCCC---CccchHHHHHHHHH
Q 013230          355 PELFSG-------PKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLK-KTFDR---SSKDERDLRSLKKR  422 (447)
Q Consensus       355 pelf~g-------~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~-~~~~~---~~~~s~~l~dLl~~  422 (447)
                      ||++..       .....+.|+|+ +|.+.++++. +..|+........+...+... ..++.   +...++.+.+++..
T Consensus       171 PE~~~~~~~~~~~~~~~~~~Diws-lG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (269)
T cd05042         171 PELVEIRGQDLLPKDQTKKSNIWS-LGVTMWELFTAADQPYPDLSDEQVLKQVVREQDIKLPKPQLDLKYSDRWYEVMQF  249 (269)
T ss_pred             HHHHhhccccccccccchhhHHHH-HHHHHHHHHhCCCCCCCcCCHHHHHHHHhhccCccCCCCcccccCCHHHHHHHHH
Confidence            887642       23345669999 8999999987 566765443333333332211 12221   34578899999998


Q ss_pred             hcccc-----CHHHHHc
Q 013230          423 LDKYN-----SAKEAIF  434 (447)
Q Consensus       423 mL~~d-----sa~elL~  434 (447)
                      |+. |     |++|++.
T Consensus       250 ~~~-dp~~Rpt~~~v~~  265 (269)
T cd05042         250 CWL-DPETRPTAEEVHE  265 (269)
T ss_pred             Hhc-CcccccCHHHHHH
Confidence            874 5     8888764

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.95  E-value=1.8e-27  Score=230.50  Aligned_cols=233  Identities=26%  Similarity=0.360  Sum_probs=180.2

Q ss_pred             CcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+..+.||+|+||.||+|+      .+|+|++....      ......+.+..|+.+++.++|        +|    |++
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~------~~~~~~~~~~~e~~~l~~~~~--------~~----i~~   62 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDN------EEEGIPSTALREISLLKELKH--------PN----IVK   62 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEecccc------ccccccHHHHHHHHHHHhcCC--------CC----HHH
Confidence            4778999999999999987      39999887542      122334667889999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++.                              ..+..|+||||+. | +|.+++.     +++..++.++.|++.|
T Consensus        63 ~~~~~~------------------------------~~~~~~~v~e~~~-~-~l~~~i~~~~~~~~~~~~~~~~~~i~~~  110 (282)
T cd07829          63 LLDVIH------------------------------TERKLYLVFEYCD-M-DLKKYLDKRPGPLSPNLIKSIMYQLLRG  110 (282)
T ss_pred             HHhhhh------------------------------cCCceEEEecCcC-c-CHHHHHHhhccCCCHHHHHHHHHHHHHH
Confidence            998843                              2467999999997 5 8988874     7899999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pel  357 (447)
                      |+|||+ .||+||||+|+||+++.++                    .+||+|||+++......     ......|++||.
T Consensus       111 l~~LH~-~~i~H~~l~~~ni~~~~~~--------------------~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~  169 (282)
T cd07829         111 LAYCHS-HRILHRDLKPQNILINRDG--------------------VLKLADFGLARAFGIPLRTYTHEVVTLWYRAPEI  169 (282)
T ss_pred             HHHHHH-CCcccCCCChheEEEcCCC--------------------CEEEecCCcccccCCCccccCccccCcCcCChHH
Confidence            999999 9999999999999999987                    79999999998654432     122234789998


Q ss_pred             CCCC-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh------------------hccCCCC---------C
Q 013230          358 FSGP-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL------------------LKKTFDR---------S  409 (447)
Q Consensus       358 f~g~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~------------------~~~~~~~---------~  409 (447)
                      +.+. ....+.|+|+ +|.+.++++.+..|+........+.+...                  ....++.         .
T Consensus       170 ~~~~~~~~~~~Dv~s-lG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (282)
T cd07829         170 LLGSKHYSTAVDIWS-VGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVL  248 (282)
T ss_pred             hcCCcCCCccccHHH-HHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCcHHHHHhhcccccccccccccCccchHHhc
Confidence            8665 4555669999 89999999999888765433322221110                  0001110         1


Q ss_pred             ccchHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          410 SKDERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       410 ~~~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                      ...+.+++++|++||..|     ++.+++.||||
T Consensus       249 ~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~p~~  282 (282)
T cd07829         249 PRLDPEGIDLLSKMLQYNPAKRISAKEALKHPYF  282 (282)
T ss_pred             ccccHHHHHHHHHhhccCcccCCCHHHHhhCcCC
Confidence            124788999999999999     99999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.95  E-value=4.3e-27  Score=224.44  Aligned_cols=227  Identities=24%  Similarity=0.291  Sum_probs=177.2

Q ss_pred             cceEEeccccceEEEEec----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          135 ENIVKVGEGTFGEAFLAG----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      ++.+.||.|+||.||+|+          .+|+|++....       .......+..|+.+++.++|        +|    
T Consensus         2 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~-------~~~~~~~~~~e~~~l~~l~~--------~~----   62 (258)
T smart00219        2 TLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDA-------DEQQIEEFLREARIMRKLDH--------PN----   62 (258)
T ss_pred             cccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCC-------ChHHHHHHHHHHHHHHhcCC--------Cc----
Confidence            677899999999999985          27888875332       12244678999999999987        77    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQ  278 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Q  278 (447)
                      |+++++++..                              .+..|++|||+.+| +|.+++.      +++..+..++.|
T Consensus        63 i~~~~~~~~~------------------------------~~~~~~i~e~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~q  111 (258)
T smart00219       63 IVKLLGVCTE------------------------------EEPLMIVMEYMEGG-DLLDYLRKNRPKELSLSDLLSFALQ  111 (258)
T ss_pred             hheEEEEEcC------------------------------CCeeEEEEeccCCC-CHHHHHHhhhhccCCHHHHHHHHHH
Confidence            9999998543                              46699999999987 9988875      789999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE------EEecC
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF------FLDLS  352 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i------~~~~~  352 (447)
                      ++.||+|||+ .|++||||||+||+++.++                    .++|+|||+++........      ....|
T Consensus       112 l~~~l~~lh~-~~~~h~dl~~~nil~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y  170 (258)
T smart00219      112 IARGMEYLES-KNFIHRDLAARNCLVGENL--------------------VVKISDFGLSRDLYDDDYYKKKGGKLPIRW  170 (258)
T ss_pred             HHHHHHHHhc-CCeeecccccceEEEccCC--------------------eEEEcccCCceecccccccccccCCCcccc
Confidence            9999999999 9999999999999999987                    7999999999876543111      12347


Q ss_pred             CCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----
Q 013230          353 QDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       353 ~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      ++||.+.+.....+.|+|+ +|.+.++++. +..|+............. .....+.+...+.++.+++.+||..|    
T Consensus       171 ~~Pe~~~~~~~~~~~Di~s-lG~i~~~l~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R  248 (258)
T smart00219      171 MAPESLKDGKFTSKSDVWS-FGVLLWEIFTLGESPYPGMSNEEVLEYLK-KGYRLPKPENCPPEIYKLMLQCWAEDPEDR  248 (258)
T ss_pred             cChHHhccCCCCcchhHHH-HHHHHHHHHhCCCCCCCCCCHHHHHHHHh-cCCCCCCCCcCCHHHHHHHHHHCcCChhhC
Confidence            8898887766777779999 9999998887 566765432222222222 22233344557899999999999999    


Q ss_pred             -CHHHHHc
Q 013230          428 -SAKEAIF  434 (447)
Q Consensus       428 -sa~elL~  434 (447)
                       |+.|+++
T Consensus       249 pt~~~ll~  256 (258)
T smart00219      249 PTFSELVE  256 (258)
T ss_pred             cCHHHHHh
Confidence             9999875

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.95  E-value=4.6e-27  Score=226.73  Aligned_cols=238  Identities=18%  Similarity=0.189  Sum_probs=178.9

Q ss_pred             CCcceEEeccccceEEEEece-------eEEEEEecCCCcccc--cccccchHHHHHHHHHHHh-ccccccCCCCCCCcc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN-------TVCKVVPIDGDLKVN--GEAQKKSEELLEEVVLSWT-LNHLRRNEGDTLNAC  202 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~-------vAiK~i~~~~~~~~~--~~~~~~~~~~~~Ei~il~~-L~h~~~~~~~~~n~~  202 (447)
                      +|++.+.||+|+||.||+|..       +|+|.+.........  .........+..|+.++.+ ++|        +|  
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h--------~~--   70 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRH--------PN--   70 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCC--------CC--
Confidence            368899999999999999873       899987654321111  1222334567788887765 666        77  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHH
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARS  274 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~  274 (447)
                        |+++++++..                              ++..|++|||+.|| +|.+++.        +++..++.
T Consensus        71 --i~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~l~~~l~~~~~~~~~~~~~~~~~  117 (269)
T cd08528          71 --IVRYYKTFLE------------------------------NDRLYIVMDLIEGA-PLGEHFNSLKEKKQRFTEERIWN  117 (269)
T ss_pred             --eeeEEeeEcc------------------------------CCeEEEEEecCCCC-cHHHHHHHHHhccCCCCHHHHHH
Confidence              9999998543                              56799999999987 8887752        78999999


Q ss_pred             HHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE----EEEe
Q 013230          275 LLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI----FFLD  350 (447)
Q Consensus       275 i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~----i~~~  350 (447)
                      ++.|++.||.|||+..||+||||||+|||++.++                    .+||+|||++.......+    ....
T Consensus       118 ~~~~l~~~l~~lh~~~~i~H~dl~~~nil~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~  177 (269)
T cd08528         118 IFVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDD--------------------KVTITDFGLAKQKQPESKLTSVVGTI  177 (269)
T ss_pred             HHHHHHHHHHHhccCCceeecCCCHHHEEECCCC--------------------cEEEecccceeecccccccccccCcc
Confidence            9999999999999647899999999999999887                    799999999987654421    2233


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC-CccchHHHHHHHHHhcccc--
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR-SSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~-~~~~s~~l~dLl~~mL~~d--  427 (447)
                      .|++|+.+.+.....+.|+|+ +|.+.++++.+..|+.............. ....+. ....++++.+|+++||+.|  
T Consensus       178 ~~~~Pe~~~~~~~~~~~Dv~s-lG~ll~~l~~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~cl~~~p~  255 (269)
T cd08528         178 LYSCPEIVKNEPYGEKADVWA-FGCILYQMCTLQPPFYSTNMLSLATKIVE-AVYEPLPEGMYSEDVTDVITSCLTPDAE  255 (269)
T ss_pred             cCcChhhhcCCCCchHHHHHH-HHHHHHHHHhCCCcccccCHHHHHHHHhh-ccCCcCCcccCCHHHHHHHHHHCCCCCc
Confidence            478999998766667779999 89999999999999865543333322221 111122 2357899999999999998  


Q ss_pred             ---CHHHHHcC
Q 013230          428 ---SAKEAIFD  435 (447)
Q Consensus       428 ---sa~elL~H  435 (447)
                         |+.|+..+
T Consensus       256 ~Rp~~~e~~~~  266 (269)
T cd08528         256 ARPDIIQVSAM  266 (269)
T ss_pred             cCCCHHHHHHH
Confidence               88887643

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.95  E-value=1.3e-27  Score=254.56  Aligned_cols=176  Identities=18%  Similarity=0.207  Sum_probs=121.9

Q ss_pred             CCceEEEEEEecCccchhhhhc---C---------------------CHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCC
Q 013230          245 ENQRYIVFVLQHGGKDLESFVL---L---------------------NINEARSLLVQVTAGLAVAEAAYEFEHRDLHWG  300 (447)
Q Consensus       245 ~~~~~ivmE~~~gG~~L~~~i~---l---------------------~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpe  300 (447)
                      ...+++||||+.+| +|.+++.   +                     ....++.++.||+.||.|||+ .+|+||||||+
T Consensus       207 ~~~~~LV~ey~~~g-sL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~-~gIiHRDLKP~  284 (566)
T PLN03225        207 EDEYWLVWRYEGES-TLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHS-TGIVHRDVKPQ  284 (566)
T ss_pred             CCceEEEEEecCCC-cHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHH-CCEEeCcCCHH
Confidence            46699999999987 8888764   1                     134467899999999999999 99999999999


Q ss_pred             CEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------CEEEEecCCCCCCCCCCC------------
Q 013230          301 NVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------DIFFLDLSQDPELFSGPK------------  362 (447)
Q Consensus       301 NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g~i~~~~~~~pelf~g~~------------  362 (447)
                      |||++.+..                   .+||+|||+|+.....      ..+....|++||.+....            
T Consensus       285 NILl~~~~~-------------------~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~  345 (566)
T PLN03225        285 NIIFSEGSG-------------------SFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVAT  345 (566)
T ss_pred             HEEEeCCCC-------------------cEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccc
Confidence            999986431                   7999999999864322      122334588888653221            


Q ss_pred             ----------CCchHHHHHhhccCCcccccCCCCCChhHH--HHHHHH----------HHhhc------cCCCCCccchH
Q 013230          363 ----------GDKQFDTYRKMKKVTEDQWEGSFPKTNVLW--LVYLVD----------MLLLK------KTFDRSSKDER  414 (447)
Q Consensus       363 ----------~~~~~di~s~lg~~~~~~~~~~~p~~~~~~--~~~~~~----------~l~~~------~~~~~~~~~s~  414 (447)
                                .....|||+ +|++.++++.+.++......  ...+..          .+...      ..+......+.
T Consensus       346 ~~sp~l~~~~~~~k~DVwS-lGviL~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  424 (566)
T PLN03225        346 ALSPVLWQLNLPDRFDIYS-AGLIFLQMAFPNLRSDSNLIQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGG  424 (566)
T ss_pred             cccchhccccCCCCcccHH-HHHHHHHHHhCcCCCchHHHHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccch
Confidence                      223349999 99999999877666543211  111100          00000      00111122345


Q ss_pred             HHHHHHHHhcccc-----CHHHHHcCCCCCCCC
Q 013230          415 DLRSLKKRLDKYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       415 ~l~dLl~~mL~~d-----sa~elL~HPff~~~~  442 (447)
                      .+.|||++||++|     ||+|+|+||||+...
T Consensus       425 ~~~dLi~~mL~~dP~kR~ta~e~L~Hpff~~~~  457 (566)
T PLN03225        425 AGWELLKSMMRFKGRQRISAKAALAHPYFDREG  457 (566)
T ss_pred             HHHHHHHHHccCCcccCCCHHHHhCCcCcCCCC
Confidence            6779999999999     999999999998653

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.95  E-value=3.1e-27  Score=232.84  Aligned_cols=228  Identities=19%  Similarity=0.200  Sum_probs=174.1

Q ss_pred             CCcceEEeccccceEEEEece----------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN----------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~----------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      +|+.++.||+|+||.||+|.+          +|+|.+....       .......+.+|+.+++.++|        ||  
T Consensus         8 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~-------~~~~~~~~~~e~~~~~~l~h--------~n--   70 (303)
T cd05110           8 ELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETT-------GPKANVEFMDEALIMASMDH--------PH--   70 (303)
T ss_pred             hceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccC-------CHHHHHHHHHHHHHHHhCCC--------CC--
Confidence            468889999999999999963          5777665321       12223467899999999988        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHH
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLV  277 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~  277 (447)
                        |+++++++.                               ....++++||+.+| +|.+++.     +++..+..++.
T Consensus        71 --iv~~~~~~~-------------------------------~~~~~~v~e~~~~g-~l~~~~~~~~~~~~~~~~~~~~~  116 (303)
T cd05110          71 --LVRLLGVCL-------------------------------SPTIQLVTQLMPHG-CLLDYVHEHKDNIGSQLLLNWCV  116 (303)
T ss_pred             --cccEEEEEc-------------------------------CCCceeeehhcCCC-CHHHHHHhcccCCCHHHHHHHHH
Confidence              999999742                               12367999999988 8888875     78889999999


Q ss_pred             HHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-------CEEEEe
Q 013230          278 QVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-------DIFFLD  350 (447)
Q Consensus       278 Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-------g~i~~~  350 (447)
                      |++.||+|||+ +||+||||||+|||++.++                    .+||+|||+++.....       +.....
T Consensus       117 qi~~~L~~LH~-~~ivH~dikp~Nill~~~~--------------------~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~  175 (303)
T cd05110         117 QIAKGMMYLEE-RRLVHRDLAARNVLVKSPN--------------------HVKITDFGLARLLEGDEKEYNADGGKMPI  175 (303)
T ss_pred             HHHHHHHHHhh-cCeeccccccceeeecCCC--------------------ceEEccccccccccCcccccccCCCcccc
Confidence            99999999999 9999999999999998876                    7999999999865432       111123


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc--
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d--  427 (447)
                      .|++||.+.+...+.+.|+|+ +|.+.+++.+ +..|+...... ...+.+.....++.+...+..+++++.+|+..+  
T Consensus       176 ~y~~PE~~~~~~~~~~~Diws-lG~~l~el~t~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~  253 (303)
T cd05110         176 KWMALECIHYRKFTHQSDVWS-YGVTIWELMTFGGKPYDGIPTR-EIPDLLEKGERLPQPPICTIDVYMVMVKCWMIDAD  253 (303)
T ss_pred             ccCCHHHhccCCCChHHHHHH-HHHHHHHHHhCCCCCCCCCCHH-HHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCChh
Confidence            478899888877777789999 9999998876 66777543221 122333223344445567889999999999988  


Q ss_pred             ---CHHHHHc
Q 013230          428 ---SAKEAIF  434 (447)
Q Consensus       428 ---sa~elL~  434 (447)
                         +++++++
T Consensus       254 ~Rp~~~~l~~  263 (303)
T cd05110         254 SRPKFKELAA  263 (303)
T ss_pred             hCcCHHHHHH
Confidence               7777654

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.95  E-value=3.5e-27  Score=227.44  Aligned_cols=227  Identities=22%  Similarity=0.333  Sum_probs=174.4

Q ss_pred             cceEEeccccceEEEEec----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          135 ENIVKVGEGTFGEAFLAG----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      ++.+.||.|.||.||+|.          .|++|.+...       ......+.+.+|+.++++++|        ||    
T Consensus         2 ~~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~-------~~~~~~~~~~~e~~~l~~l~h--------~n----   62 (259)
T PF07714_consen    2 KLIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPS-------SSEEEEEEFLNEIQILRKLRH--------PN----   62 (259)
T ss_dssp             EEEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTT-------SSHHHHHHHHHHHHHHHTHSB--------TT----
T ss_pred             EEeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccc-------cccccceeeeecccccccccc--------cc----
Confidence            457899999999999975          2789988532       122235788999999999988        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQ  278 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Q  278 (447)
                      |+++++++..                              .+.+++|||||.+| +|.+++.      ++......++.|
T Consensus        63 i~~~~g~~~~------------------------------~~~~~lv~e~~~~g-~L~~~L~~~~~~~~~~~~~~~i~~~  111 (259)
T PF07714_consen   63 IVKLYGFCIE------------------------------NEPLFLVMEYCPGG-SLDDYLKSKNKEPLSEQQRLSIAIQ  111 (259)
T ss_dssp             BE-EEEEEES------------------------------SSSEEEEEE--TTE-BHHHHHHHTCTTTSBHHHHHHHHHH
T ss_pred             cccccccccc------------------------------cccccccccccccc-ccccccccccccccccccccccccc
Confidence            9999999652                              34599999999988 9998876      889999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE-------EEec
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF-------FLDL  351 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i-------~~~~  351 (447)
                      |+.||+|||+ .+++|+||++.|||++.++                    .+||+|||+++........       ....
T Consensus       112 i~~~l~~Lh~-~~iiH~~l~~~nill~~~~--------------------~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~  170 (259)
T PF07714_consen  112 IAEALSYLHS-NNIIHGNLSPSNILLDSNG--------------------QVKLSDFGLSRPISEKSKYKNDSSQQLPLR  170 (259)
T ss_dssp             HHHHHHHHHH-TTEEEST-SGGGEEEETTT--------------------EEEEESTTTGEETTTSSSEEESTTSESGGG
T ss_pred             cccccccccc-ccccccccccccccccccc--------------------cccccccccccccccccccccccccccccc
Confidence            9999999999 9999999999999999987                    8999999999887332221       1123


Q ss_pred             CCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc---
Q 013230          352 SQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN---  427 (447)
Q Consensus       352 ~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d---  427 (447)
                      |++||.+.+...+.+.|||+ +|.+.+++++ +..|+.+........ .+......+.+...+..+.++|.+|+..|   
T Consensus       171 ~~aPE~~~~~~~~~ksDVys-fG~~l~ei~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~C~~~~p~~  248 (259)
T PF07714_consen  171 YLAPEVLKDGEYTKKSDVYS-FGMLLYEILTLGKFPFSDYDNEEIIE-KLKQGQRLPIPDNCPKDIYSLIQQCWSHDPEK  248 (259)
T ss_dssp             GS-HHHHHHSEESHHHHHHH-HHHHHHHHHTTSSGTTTTSCHHHHHH-HHHTTEETTSBTTSBHHHHHHHHHHT-SSGGG
T ss_pred             cccccccccccccccccccc-cccccccccccccccccccccccccc-cccccccceeccchhHHHHHHHHHHcCCChhh
Confidence            77888887766677789999 9999999999 567876653333333 33334445555668999999999999988   


Q ss_pred             --CHHHHHc
Q 013230          428 --SAKEAIF  434 (447)
Q Consensus       428 --sa~elL~  434 (447)
                        |+.++++
T Consensus       249 RPs~~~i~~  257 (259)
T PF07714_consen  249 RPSFQEILQ  257 (259)
T ss_dssp             S--HHHHHH
T ss_pred             CcCHHHHHh
Confidence              8888874

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.95  E-value=6.7e-27  Score=223.73  Aligned_cols=226  Identities=16%  Similarity=0.147  Sum_probs=164.7

Q ss_pred             EEeccccceEEEEece----------------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCc
Q 013230          138 VKVGEGTFGEAFLAGN----------------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA  201 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~~----------------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~  201 (447)
                      +.||+|+||.||+|..                +++|++....         .....+.+|+.+++.++|        +| 
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~---------~~~~~~~~e~~~l~~l~h--------~~-   62 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDH---------RDSLAFFETASLMSQLSH--------KH-   62 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccch---------hhHHHHHHHHHHHHcCCC--------cc-
Confidence            4699999999999974                4455443221         114678899999999988        88 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHH
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLL  276 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~  276 (447)
                         |+++++++..                               ...|+||||+.+| +|.+++.     ++...+..++
T Consensus        63 ---i~~~~~~~~~-------------------------------~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~  107 (259)
T cd05037          63 ---LVKLYGVCVR-------------------------------DENIMVEEYVKFG-PLDVFLHREKNNVSLHWKLDVA  107 (259)
T ss_pred             ---hhheeeEEec-------------------------------CCcEEEEEcCCCC-cHHHHHHhhccCCCHHHHHHHH
Confidence               9999998532                               3479999999988 9998875     7889999999


Q ss_pred             HHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-EEEEecCCCC
Q 013230          277 VQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-IFFLDLSQDP  355 (447)
Q Consensus       277 ~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-~i~~~~~~~p  355 (447)
                      .||+.||+|||+ .||+||||||+|||++.++..             ......+||+|||+++...... ......|++|
T Consensus       108 ~~i~~~l~~LH~-~~i~H~dlkp~Nill~~~~~~-------------~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~y~aP  173 (259)
T cd05037         108 KQLASALHYLED-KKLVHGNVCGKNILVARYGLN-------------EGYVPFIKLSDPGIPITVLSREERVERIPWIAP  173 (259)
T ss_pred             HHHHHHHHHHhh-CCeecccCccceEEEecCccc-------------cCCceeEEeCCCCcccccccccccccCCCccCh
Confidence            999999999999 999999999999999987520             0011259999999998754421 1223347899


Q ss_pred             CCCCCC--CCCchHHHHHhhccCCcccccC-CCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----
Q 013230          356 ELFSGP--KGDKQFDTYRKMKKVTEDQWEG-SFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----  427 (447)
Q Consensus       356 elf~g~--~~~~~~di~s~lg~~~~~~~~~-~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----  427 (447)
                      |.+.+.  ....+.|+|+ +|.+.++++.+ ..|+........ ..........+  ......+.+|+.+||..+     
T Consensus       174 E~~~~~~~~~~~~~Di~s-lG~~~~~l~~~~~~p~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~li~~~l~~~p~~Rp  249 (259)
T cd05037         174 ECIRNGQASLTIAADKWS-FGTTLLEICSNGEEPLSTLSSSEK-ERFYQDQHRLP--MPDCAELANLINQCWTYDPTKRP  249 (259)
T ss_pred             hhhcCCCCCcchhhHHHH-HHHHHHHHHhCCCCCcccCCchhH-HHHHhcCCCCC--CCCchHHHHHHHHHhccChhhCC
Confidence            999876  4556679999 99999998874 566544321111 11111111222  223489999999999998     


Q ss_pred             CHHHHHc
Q 013230          428 SAKEAIF  434 (447)
Q Consensus       428 sa~elL~  434 (447)
                      |+.++++
T Consensus       250 t~~~il~  256 (259)
T cd05037         250 SFRAILR  256 (259)
T ss_pred             CHHHHHH
Confidence            8988875

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.95  E-value=9.2e-27  Score=224.93  Aligned_cols=236  Identities=18%  Similarity=0.181  Sum_probs=173.5

Q ss_pred             CcceEEeccccceEEEEec---------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          134 PENIVKVGEGTFGEAFLAG---------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~---------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      |++.+.||+|+||.||+|.         .+|+|++..+.      ......+.+.+|+.+++.++|        ||    
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------~~----   62 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADI------FSSSDIEEFLREAACMKEFDH--------PN----   62 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEecccc------CChHHHHHHHHHHHHHhcCCC--------CC----
Confidence            4778899999999999985         38999886432      122334678899999999998        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----------CCHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----------LNINEARS  274 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----------l~~~~~~~  274 (447)
                      |+++++++......                        ......+++++|+.+| +|..++.          ++...++.
T Consensus        63 i~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~l~~~~~~~  117 (273)
T cd05074          63 VIKLIGVSLRSRAK------------------------GRLPIPMVILPFMKHG-DLHTFLLMSRIGEEPFTLPLQTLVR  117 (273)
T ss_pred             cceEEEEEccCCCC------------------------CcccceEEEEecCCCC-cHHHHHHHhcccCCCCCCCHHHHHH
Confidence            99999986431100                        0012357899999988 8877652          68889999


Q ss_pred             HHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----E--E
Q 013230          275 LLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----I--F  347 (447)
Q Consensus       275 i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~--i  347 (447)
                      ++.||+.||+|||+ .||+||||||+|||++.+.                    .+||+|||+++......     +  .
T Consensus       118 ~~~~i~~~l~~lH~-~~i~H~dikp~nili~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~  176 (273)
T cd05074         118 FMIDIASGMEYLSS-KNFIHRDLAARNCMLNENM--------------------TVCVADFGLSKKIYSGDYYRQGCASK  176 (273)
T ss_pred             HHHHHHHHHHHHHh-CCEeecccchhhEEEcCCC--------------------CEEECcccccccccCCcceecCCCcc
Confidence            99999999999999 9999999999999998876                    79999999998653221     1  1


Q ss_pred             EEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhccc
Q 013230          348 FLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKY  426 (447)
Q Consensus       348 ~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~  426 (447)
                      ....|++|+.+.+.......|+|+ +|.+.++++. +..|+........ .........+..+...+..+.+++.+||..
T Consensus       177 ~~~~~~~pe~~~~~~~~~~sDi~s-lG~il~el~~~g~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  254 (273)
T cd05074         177 LPVKWLALESLADNVYTTHSDVWA-FGVTMWEIMTRGQTPYAGVENSEI-YNYLIKGNRLKQPPDCLEDVYELMCQCWSP  254 (273)
T ss_pred             CchhhcCHhHHhcCccchhhhhHH-HHHHHHHHhhCCCCCCCCCCHHHH-HHHHHcCCcCCCCCCCCHHHHHHHHHHcCC
Confidence            113467788776666666779999 8999999988 6666644322221 111211222333345778999999999998


Q ss_pred             c-----CHHHHHcC
Q 013230          427 N-----SAKEAIFD  435 (447)
Q Consensus       427 d-----sa~elL~H  435 (447)
                      +     |+.+++++
T Consensus       255 ~p~~Rps~~~~~~~  268 (273)
T cd05074         255 EPKCRPSFQHLRDQ  268 (273)
T ss_pred             ChhhCcCHHHHHHH
Confidence            8     88888753

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.95  E-value=1.3e-26  Score=223.98  Aligned_cols=224  Identities=20%  Similarity=0.231  Sum_probs=163.0

Q ss_pred             EEeccccceEEEEec--------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeee
Q 013230          138 VKVGEGTFGEAFLAG--------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMF  209 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~--------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~  209 (447)
                      +.||+|+||.||+|.        .+|+|.+....       .......+.+|+.++++++|        ||    |++++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------~~----iv~~~   61 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSA-------SVQEQMKFLEEAQPYRSLQH--------SN----LLQCL   61 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCC-------ChHHHHHHHHHHHHHHhCCC--------CC----EeeEE
Confidence            368999999999985        27888765432       11223468889999999998        88    99999


Q ss_pred             eEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------CCHHHHHHHHHHHH
Q 013230          210 EIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------LNINEARSLLVQVT  280 (447)
Q Consensus       210 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------l~~~~~~~i~~Qil  280 (447)
                      +++.                              .....|+||||+.+| +|.+++.         .+...++.++.|++
T Consensus        62 ~~~~------------------------------~~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~  110 (269)
T cd05087          62 GQCT------------------------------EVTPYLLVMEFCPLG-DLKGYLRSCRKAELMTPDPTTLQRMACEIA  110 (269)
T ss_pred             EEEc------------------------------CCCCcEEEEECCCCC-cHHHHHHHhhhcccccccHHHHHHHHHHHH
Confidence            8743                              245689999999988 9998874         45667888999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE-------EEecCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF-------FLDLSQ  353 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i-------~~~~~~  353 (447)
                      .||+|||+ .|++||||||+||+++.++                    .+||+|||+++........       ....|+
T Consensus       111 ~al~~lH~-~~i~H~dlkp~nil~~~~~--------------------~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~  169 (269)
T cd05087         111 LGLLHLHK-NNFIHSDLALRNCLLTADL--------------------TVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWI  169 (269)
T ss_pred             HHHHHHHH-CCEeccccCcceEEEcCCC--------------------cEEECCccccccccCcceeecCCCcCCccccc
Confidence            99999999 9999999999999999886                    7999999999764332211       112378


Q ss_pred             CCCCCCCCC-------CCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhh-ccCCCC---CccchHHHHHHHH
Q 013230          354 DPELFSGPK-------GDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLL-KKTFDR---SSKDERDLRSLKK  421 (447)
Q Consensus       354 ~pelf~g~~-------~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~-~~~~~~---~~~~s~~l~dLl~  421 (447)
                      +||++.+..       ...+.|+|+ +|.+.+++++ |..|+............... ...++.   ....++.+.++++
T Consensus       170 aPE~~~~~~~~~~~~~~~~~~Diws-lG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  248 (269)
T cd05087         170 APELVDEVHGNLLVVDQTKESNVWS-LGVTIWELFELGSQPYRHLSDEQVLTYTVREQQLKLPKPRLKLPLSDRWYEVMQ  248 (269)
T ss_pred             CHhHhccccccccccCCCccchhHH-HHHHHHHHHhCCCCCCCCCChHHHHHHHhhcccCCCCCCccCCCCChHHHHHHH
Confidence            999886432       234569999 8999999985 87787543222222111111 112222   1246788999999


Q ss_pred             Hhcccc-----CHHHHHc
Q 013230          422 RLDKYN-----SAKEAIF  434 (447)
Q Consensus       422 ~mL~~d-----sa~elL~  434 (447)
                      +|+ .+     |++|++.
T Consensus       249 ~c~-~~P~~Rpt~~~l~~  265 (269)
T cd05087         249 FCW-LQPEQRPSAEEVHL  265 (269)
T ss_pred             HHh-cCcccCCCHHHHHH
Confidence            998 45     8888864

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.95  E-value=2e-26  Score=223.77  Aligned_cols=230  Identities=17%  Similarity=0.161  Sum_probs=176.4

Q ss_pred             CCcceEEeccccceEEEEece----------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN----------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~----------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      +|++.+.||+|+||.||+|..          ||+|.+...       ........+.+|+.+++.++|        +|  
T Consensus         7 ~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~-------~~~~~~~~~~~e~~~l~~l~h--------~n--   69 (280)
T cd05043           7 RVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDH-------ASEIQVTLLLQESCLLYGLSH--------QN--   69 (280)
T ss_pred             heEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCC-------CCHHHHHHHHHHHHHHHhCCC--------CC--
Confidence            358899999999999999962          667765422       223345678899999999988        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------------CCHH
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------------LNIN  270 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------------l~~~  270 (447)
                        |+++++++..                             .....++++||+.+| +|..++.            +++.
T Consensus        70 --i~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~-~L~~~l~~~~~~~~~~~~~l~~~  117 (280)
T cd05043          70 --ILPILHVCIE-----------------------------DGEPPFVLYPYMNWG-NLKLFLQQCRLGEANNPQALSTQ  117 (280)
T ss_pred             --CCeEEEEEec-----------------------------CCCCCEEEEEcCCCC-cHHHHHHhccccccccccCCCHH
Confidence              9999988532                             134589999999977 9988863            6788


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE---
Q 013230          271 EARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF---  347 (447)
Q Consensus       271 ~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i---  347 (447)
                      .+..++.||+.||+|||+ .+++||||||+|||++.++                    .+||+|||+++........   
T Consensus       118 ~~~~i~~~i~~~l~~LH~-~~i~H~di~p~nil~~~~~--------------------~~kl~d~g~~~~~~~~~~~~~~  176 (280)
T cd05043         118 QLVHMAIQIACGMSYLHK-RGVIHKDIAARNCVIDEEL--------------------QVKITDNALSRDLFPMDYHCLG  176 (280)
T ss_pred             HHHHHHHHHHHHHHHHHH-CCEeecccCHhhEEEcCCC--------------------cEEECCCCCcccccCCceEEeC
Confidence            999999999999999999 9999999999999999886                    7999999999865332110   


Q ss_pred             ----EEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHH
Q 013230          348 ----FLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKR  422 (447)
Q Consensus       348 ----~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~  422 (447)
                          ....|++||.+.+.......|||+ +|.+.+++++ +..|+....... +...+.....++.+...++++.+++.+
T Consensus       177 ~~~~~~~~y~apE~~~~~~~~~~~Di~s-lG~~l~el~~~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~  254 (280)
T cd05043         177 DNENRPVKWMALESLVNKEYSSASDVWS-FGVLLWELMTLGQTPYVEIDPFE-MAAYLKDGYRLAQPINCPDELFAVMAC  254 (280)
T ss_pred             CCCCcchhccCHHHHhcCCCCchhhHHH-hHHHHHHHhcCCCCCcCcCCHHH-HHHHHHcCCCCCCCCcCCHHHHHHHHH
Confidence                112378999998877777789999 8999999998 778876543222 222222222333344568899999999


Q ss_pred             hcccc-----CHHHHHc
Q 013230          423 LDKYN-----SAKEAIF  434 (447)
Q Consensus       423 mL~~d-----sa~elL~  434 (447)
                      |+..|     |+.++++
T Consensus       255 ~l~~~p~~Rps~~~~~~  271 (280)
T cd05043         255 CWALDPEERPSFSQLVQ  271 (280)
T ss_pred             HcCCChhhCCCHHHHHH
Confidence            99998     8888874

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.94  E-value=1.3e-27  Score=241.15  Aligned_cols=203  Identities=22%  Similarity=0.257  Sum_probs=168.7

Q ss_pred             hhhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCC
Q 013230          126 DLFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTL  199 (447)
Q Consensus       126 ~~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~  199 (447)
                      ..+.++.+|..++.+|+|+||.|++|.+      |++|.|.+.+...-........-.+..||.||.+|+..        
T Consensus       555 ~~~~k~s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~--------  626 (772)
T KOG1152|consen  555 KEYKKFSDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKH--------  626 (772)
T ss_pred             eeecccccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhc--------
Confidence            3455566789999999999999999974      99999887765444444455556678899999999943        


Q ss_pred             CcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHH
Q 013230          200 NACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSL  275 (447)
Q Consensus       200 n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i  275 (447)
                       .|+||++++++|.                              +++.+||+||---.|-||+++|.    +++.+++.|
T Consensus       627 -sH~NIlKlLdfFE------------------------------ddd~yyl~te~hg~gIDLFd~IE~kp~m~E~eAk~I  675 (772)
T KOG1152|consen  627 -SHENILKLLDFFE------------------------------DDDYYYLETEVHGEGIDLFDFIEFKPRMDEPEAKLI  675 (772)
T ss_pred             -Cccchhhhhheee------------------------------cCCeeEEEecCCCCCcchhhhhhccCccchHHHHHH
Confidence             3444999999954                              46779999998777789999998    999999999


Q ss_pred             HHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE---EEEecC
Q 013230          276 LVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI---FFLDLS  352 (447)
Q Consensus       276 ~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~---i~~~~~  352 (447)
                      ++||+.|+++||+ .||||||||-||+.++.+|                    -+||+|||.|.....+..   +..--|
T Consensus       676 FkQV~agi~hlh~-~~ivhrdikdenvivd~~g--------------------~~klidfgsaa~~ksgpfd~f~gtv~~  734 (772)
T KOG1152|consen  676 FKQVVAGIKHLHD-QGIVHRDIKDENVIVDSNG--------------------FVKLIDFGSAAYTKSGPFDVFVGTVDY  734 (772)
T ss_pred             HHHHHhccccccc-cCceecccccccEEEecCC--------------------eEEEeeccchhhhcCCCcceeeeeccc
Confidence            9999999999999 9999999999999999998                    799999999987665421   222338


Q ss_pred             CCCCCCCCCCCCchH-HHHHhhccCCcccccCCCCCCh
Q 013230          353 QDPELFSGPKGDKQF-DTYRKMKKVTEDQWEGSFPKTN  389 (447)
Q Consensus       353 ~~pelf~g~~~~~~~-di~s~lg~~~~~~~~~~~p~~~  389 (447)
                      .+||+..|.++-.+- |||+ +|+..+...-...|++|
T Consensus       735 aapevl~g~~y~gk~qdiwa-lgillytivykenpyyn  771 (772)
T KOG1152|consen  735 AAPEVLGGEKYLGKPQDIWA-LGILLYTIVYKENPYYN  771 (772)
T ss_pred             cchhhhCCCccCCCcchhhh-hhheeeEEEeccCCCcC
Confidence            999999999888887 9999 99999888777777765

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.94  E-value=5.3e-28  Score=229.69  Aligned_cols=238  Identities=20%  Similarity=0.275  Sum_probs=163.9

Q ss_pred             cceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      ..++.+|.|.- .|--|-      .||+|.+....      ..+....+..+|..++..++|        +|    ||++
T Consensus        20 ~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf------~n~~~akra~rel~l~~~v~~--------~n----ii~l   80 (369)
T KOG0665|consen   20 VNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPF------QNQTHAKRAYRELKLMKCVNH--------KN----IISL   80 (369)
T ss_pred             eeecccCCCCc-eEEecchhhccCceehhhhcCcc------ccCccchhhhhhhhhhhhhcc--------cc----eeee
Confidence            77788888887 444443      49999776552      335667889999999999999        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--CCHHHHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--LNINEARSLLVQVTAGLAVA  286 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--l~~~~~~~i~~Qil~gL~yl  286 (447)
                      +.+|.-+-.                        ......+|+||||++  .+|.+++.  ++...+++++.|++.|++||
T Consensus        81 ~n~ftP~~~------------------------l~~~~e~y~v~e~m~--~nl~~vi~~elDH~tis~i~yq~~~~ik~l  134 (369)
T KOG0665|consen   81 LNVFTPQKT------------------------LEEFQEVYLVMELMD--ANLCQVILMELDHETISYILYQMLCGIKHL  134 (369)
T ss_pred             eeccCcccc------------------------HHHHHhHHHHHHhhh--hHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            999643110                        001234899999998  48888876  88999999999999999999


Q ss_pred             HHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCCCCCCCCC
Q 013230          287 EAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDPELFSGPK  362 (447)
Q Consensus       287 H~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~pelf~g~~  362 (447)
                      |+ .||+||||||+||++..+.                    .+||.|||+|+.....    ..+..-+|.+||+..|..
T Consensus       135 hs-~~IihRdLkPsnivv~~~~--------------------~lKi~dfg~ar~e~~~~~mtpyVvtRyyrapevil~~~  193 (369)
T KOG0665|consen  135 HS-AGIIHRDLKPSNIVVNSDC--------------------TLKILDFGLARTEDTDFMMTPYVVTRYYRAPEVILGMG  193 (369)
T ss_pred             Hh-cceeecccCcccceecchh--------------------heeeccchhhcccCcccccCchhheeeccCchheeccC
Confidence            99 9999999999999999997                    7999999999865433    122233355555555544


Q ss_pred             CCchHHHHHhhccCCcccccCC--CCCCh---------------------------hHH----HHHHH---HHHhhccCC
Q 013230          363 GDKQFDTYRKMKKVTEDQWEGS--FPKTN---------------------------VLW----LVYLV---DMLLLKKTF  406 (447)
Q Consensus       363 ~~~~~di~s~lg~~~~~~~~~~--~p~~~---------------------------~~~----~~~~~---~~l~~~~~~  406 (447)
                      +...+|||+ +|++..++..+.  +|...                           ..+    .++..   ..+.....|
T Consensus       194 ~ke~vdiwS-vGci~gEli~~~Vlf~g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~~~~y~~~~f~~~fpD~~f  272 (369)
T KOG0665|consen  194 YKENVDIWS-VGCIMGELILGTVLFPGKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVENRPQYQAISFSELFPDSLF  272 (369)
T ss_pred             Ccccchhhh-hhhHHHHHhhceEEecCchHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhhcChHhhccchhhhCCcccc
Confidence            444445555 555544444332  11100                           000    01111   111111122


Q ss_pred             CC----CccchHHHHHHHHHhcccc-----CHHHHHcCCCCC
Q 013230          407 DR----SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFS  439 (447)
Q Consensus       407 ~~----~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~  439 (447)
                      +.    .......++||+.+||..|     |++++|+||||+
T Consensus       273 ~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~HPY~~  314 (369)
T KOG0665|consen  273 PVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALRHPYIK  314 (369)
T ss_pred             cccccCCccchHHHHHHHHHhhccChhhcccHHHHhcCCeee
Confidence            21    2234678999999999999     999999999997

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.94  E-value=3.3e-26  Score=221.29  Aligned_cols=223  Identities=18%  Similarity=0.197  Sum_probs=160.1

Q ss_pred             EeccccceEEEEece--------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeee
Q 013230          139 KVGEGTFGEAFLAGN--------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       139 ~LG~G~fG~V~~a~~--------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      +||+|+||.||+|+.        +++|.+...       ......+.+.+|+.+++.++|        ||    |+++++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~-------~~~~~~~~~~~e~~~~~~l~h--------~~----iv~~~~   62 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKAN-------ASSKEQNEFLQQGDPYRILQH--------PN----ILQCLG   62 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCC-------CChHHHHHHHHHHHHHhccCC--------cc----hhheEE
Confidence            599999999999862        344544322       112234678999999999988        88    999999


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHHHHHH
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQVTAG  282 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Qil~g  282 (447)
                      .+..                              ....|+||||+.+| +|.+++.        ++...++.++.||+.|
T Consensus        63 ~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~a  111 (268)
T cd05086          63 QCVE------------------------------AIPYLLVFEYCELG-DLKSYLSQEQWHRRNSQLLLLQRMACEIAAG  111 (268)
T ss_pred             EecC------------------------------CCccEEEEecCCCC-cHHHHHHhhhcccccccHHHHHHHHHHHHHH
Confidence            8532                              45689999999988 9998875        4567788999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-------CEEEEecCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-------DIFFLDLSQDP  355 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-------g~i~~~~~~~p  355 (447)
                      |+|||+ .+|+||||||+|||++.++                    .+||+|||+++.....       +......|++|
T Consensus       112 l~~lH~-~~i~H~dikp~nil~~~~~--------------------~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  170 (268)
T cd05086         112 VTHMHK-HNFLHSDLALRNCFLTSDL--------------------TVKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAP  170 (268)
T ss_pred             HHHHHH-CCeeccCCccceEEEcCCc--------------------cEEecccccccccCcchhhhcccCCcCcccccCc
Confidence            999999 9999999999999998887                    7999999998653211       11222347889


Q ss_pred             CCCCCC-------CCCchHHHHHhhccCCcccccC-CCCCChhHHHHHHHHHHhhcc-CC---CCCccchHHHHHHHHHh
Q 013230          356 ELFSGP-------KGDKQFDTYRKMKKVTEDQWEG-SFPKTNVLWLVYLVDMLLLKK-TF---DRSSKDERDLRSLKKRL  423 (447)
Q Consensus       356 elf~g~-------~~~~~~di~s~lg~~~~~~~~~-~~p~~~~~~~~~~~~~l~~~~-~~---~~~~~~s~~l~dLl~~m  423 (447)
                      |+..+.       ....+.|+|+ +|.+.++++.+ ..|+............+.... .+   ......++.+.+++..|
T Consensus       171 E~~~~~~~~~~~~~~~~~~Diws-lG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  249 (268)
T cd05086         171 ELVGEFHGGLITAEQTKPSNVWA-LGVTLWELFENAAQPYSHLSDREVLNHVIKDQQVKLFKPQLELPYSERWYEVLQFC  249 (268)
T ss_pred             hhcccccCccccCCCCCcchhHH-HHHHHHHHHhCCCCCCCCCCHHHHHHHHHhhcccccCCCccCCCCcHHHHHHHHHH
Confidence            887432       1234569999 89999998864 456643322222333222211 11   11235788999999999


Q ss_pred             cccc-----CHHHHHc
Q 013230          424 DKYN-----SAKEAIF  434 (447)
Q Consensus       424 L~~d-----sa~elL~  434 (447)
                      + .+     |++++++
T Consensus       250 ~-~~P~~Rp~~~~i~~  264 (268)
T cd05086         250 W-LSPEKRATAEEVHR  264 (268)
T ss_pred             h-hCcccCCCHHHHHH
Confidence            8 34     8888864

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.94  E-value=2.1e-26  Score=221.91  Aligned_cols=228  Identities=22%  Similarity=0.256  Sum_probs=171.5

Q ss_pred             EeccccceEEEEece------------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          139 KVGEGTFGEAFLAGN------------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       139 ~LG~G~fG~V~~a~~------------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .||+|+||.||+|+.            +|+|.+...       ........+.+|+.+++.++|        ||    |+
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~-------~~~~~~~~~~~e~~~l~~l~h--------~~----i~   62 (269)
T cd05044           2 FLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKG-------ATDQEKKEFLKEAHLMSNFNH--------PN----IV   62 (269)
T ss_pred             ccccccceeEEeeeecccccCcccceeehhhhhhcc-------cchhhHHHHHHHHHHHHhcCC--------CC----ee
Confidence            589999999999863            677765432       112234578899999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----------CCHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----------LNINEARSL  275 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----------l~~~~~~~i  275 (447)
                      ++++++.                              .....|+||||+.+| +|.+++.           +++..+..+
T Consensus        63 ~~~~~~~------------------------------~~~~~~~v~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~~~  111 (269)
T cd05044          63 KLLGVCL------------------------------LNEPQYIIMELMEGG-DLLSYLRDARVERFGPPLLTLKELLDI  111 (269)
T ss_pred             eEeeeec------------------------------CCCCeEEEEeccCCC-cHHHHHHHhhhcccCCccccHHHHHHH
Confidence            9999843                              255689999999988 9988874           577889999


Q ss_pred             HHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------CE-EE
Q 013230          276 LVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------DI-FF  348 (447)
Q Consensus       276 ~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g~-i~  348 (447)
                      +.||+.||+|||+ .+++|+||||+|||++.++.               .....++|+|||+++.....      +. ..
T Consensus       112 ~~~l~~~l~~lH~-~~i~H~dl~p~nil~~~~~~---------------~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~  175 (269)
T cd05044         112 CLDVAKGCVYLEQ-MHFIHRDLAARNCLVSEKGY---------------DADRVVKIGDFGLARDIYKSDYYRKEGEGLL  175 (269)
T ss_pred             HHHHHHHHHHHHh-CCcccCCCChheEEEecCCC---------------CCCcceEECCcccccccccccccccCcccCC
Confidence            9999999999999 99999999999999988641               00125999999998754322      11 12


Q ss_pred             EecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc
Q 013230          349 LDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       349 ~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d  427 (447)
                      ...|++||.+.+.....+.|+|+ +|.+.+++++ +..|+.......... .+.....+..+...+..+.+|+.+||..+
T Consensus       176 ~~~y~aPE~~~~~~~~~~~Dv~s-lG~il~ellt~g~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~l~~~  253 (269)
T cd05044         176 PVRWMAPESLLDGKFTTQSDVWS-FGVLMWEILTLGQQPYPALNNQEVLQ-HVTAGGRLQKPENCPDKIYQLMTNCWAQD  253 (269)
T ss_pred             CccccCHHHHccCCcccchhHHH-HHHHHHHHHHcCCCCCcccCHHHHHH-HHhcCCccCCcccchHHHHHHHHHHcCCC
Confidence            23478999888777777789999 8999999997 777775432222222 22222334445567899999999999998


Q ss_pred             -----CHHHHHc
Q 013230          428 -----SAKEAIF  434 (447)
Q Consensus       428 -----sa~elL~  434 (447)
                           |++++++
T Consensus       254 p~~Rp~~~~i~~  265 (269)
T cd05044         254 PSERPTFDRIQE  265 (269)
T ss_pred             cccCCCHHHHHH
Confidence                 8888764

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.94  E-value=4e-27  Score=246.52  Aligned_cols=233  Identities=21%  Similarity=0.197  Sum_probs=175.1

Q ss_pred             ceEEeccccceE-EEEe----ceeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeee
Q 013230          136 NIVKVGEGTFGE-AFLA----GNTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       136 ~~~~LG~G~fG~-V~~a----~~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      .-+.+|.|+-|+ ||+|    +.||||.+-..           ...-+.+||.+|+.-+.           |||||++|.
T Consensus       513 ~~eilG~Gs~Gt~Vf~G~ye~R~VAVKrll~e-----------~~~~A~rEi~lL~eSD~-----------H~NviRyyc  570 (903)
T KOG1027|consen  513 PKEILGYGSNGTVVFRGVYEGREVAVKRLLEE-----------FFDFAQREIQLLQESDE-----------HPNVIRYYC  570 (903)
T ss_pred             cHHHcccCCCCcEEEEEeeCCceehHHHHhhH-----------hHHHHHHHHHHHHhccC-----------CCceEEEEe
Confidence            336689998887 4666    46999976532           33567899999988764           445999988


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhcC--------CHHHHHHHHHHHHHH
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLL--------NINEARSLLVQVTAG  282 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~l--------~~~~~~~i~~Qil~g  282 (447)
                      .                              ..+++..||+.|.|.  ++|.+++..        ..-..+.++.|++.|
T Consensus       571 ~------------------------------E~d~qF~YIalELC~--~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~G  618 (903)
T KOG1027|consen  571 S------------------------------EQDRQFLYIALELCA--CSLQDLIESSGLDVEMQSDIDPISVLSQIASG  618 (903)
T ss_pred             e------------------------------ccCCceEEEEehHhh--hhHHHHHhccccchhhcccccHHHHHHHHHHH
Confidence            7                              334678999999999  799999872        113457899999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--------CEEEEecCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--------DIFFLDLSQD  354 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--------g~i~~~~~~~  354 (447)
                      |+|||+ ++||||||||+||||......               ....++|+|||+|+....+        |+-..+-++|
T Consensus       619 laHLHs-l~iVHRDLkPQNILI~~~~~~---------------~~~ra~iSDfglsKkl~~~~sS~~r~s~~sGt~GW~A  682 (903)
T KOG1027|consen  619 LAHLHS-LKIVHRDLKPQNILISVPSAD---------------GTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQA  682 (903)
T ss_pred             HHHHHh-cccccccCCCceEEEEccCCC---------------cceeEEecccccccccCCCcchhhcccCCCCcccccC
Confidence            999999 999999999999999985310               0147999999999886554        4445555899


Q ss_pred             CCCCCCCCCCchHHHHHhhccCCcccccC-CCCCChhHHHHHHHHHHhhccCCCC-CccchHHHHHHHHHhcccc-----
Q 013230          355 PELFSGPKGDKQFDTYRKMKKVTEDQWEG-SFPKTNVLWLVYLVDMLLLKKTFDR-SSKDERDLRSLKKRLDKYN-----  427 (447)
Q Consensus       355 pelf~g~~~~~~~di~s~lg~~~~~~~~~-~~p~~~~~~~~~~~~~l~~~~~~~~-~~~~s~~l~dLl~~mL~~d-----  427 (447)
                      ||+..........|||+ +|++.+...++ ..||....-  .-..++.+...+-. ....+.+++|||.+||.++     
T Consensus       683 PE~L~~~~~~~avDiFs-lGCvfyYvltgG~HpFGd~~~--R~~NIl~~~~~L~~L~~~~d~eA~dLI~~ml~~dP~~RP  759 (903)
T KOG1027|consen  683 PEQLREDRKTQAVDIFS-LGCVFYYVLTGGSHPFGDSLE--RQANILTGNYTLVHLEPLPDCEAKDLISRMLNPDPQLRP  759 (903)
T ss_pred             HHHHhccccCcccchhh-cCceEEEEecCCccCCCchHH--hhhhhhcCccceeeeccCchHHHHHHHHHhcCCCcccCC
Confidence            99998866666669999 99998887777 588876422  22344443332221 1112239999999999999     


Q ss_pred             CHHHHHcCCCCCCC
Q 013230          428 SAKEAIFDPFFSDL  441 (447)
Q Consensus       428 sa~elL~HPff~~~  441 (447)
                      +|.++|.||||.+.
T Consensus       760 sa~~VL~HPlFW~~  773 (903)
T KOG1027|consen  760 SATDVLNHPLFWDS  773 (903)
T ss_pred             CHHHHhCCCccCCh
Confidence            99999999999865

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.1e-26  Score=244.91  Aligned_cols=221  Identities=22%  Similarity=0.206  Sum_probs=182.4

Q ss_pred             CcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          134 PENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      .+..++||+|+||+||+|+           -||||.++.+       ...+...++.+|+.++..|+|        ||  
T Consensus       488 i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~-------a~~~~~~dF~REaeLla~l~H--------~n--  550 (774)
T KOG1026|consen  488 IVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDK-------AENQARQDFRREAELLAELQH--------PN--  550 (774)
T ss_pred             eeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhccc-------ccHHHHHHHHHHHHHHHhccC--------CC--
Confidence            3677999999999999997           2999988744       233355789999999999999        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----------------
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----------------  266 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----------------  266 (447)
                        ||+|+++...                              ++-+|+|+|||..| ||.+|++                
T Consensus       551 --IVrLlGVC~~------------------------------~~P~~MvFEYm~~G-DL~eFLra~sP~a~~~~~g~~~~  597 (774)
T KOG1026|consen  551 --IVRLLGVCRE------------------------------GDPLCMVFEYMDHG-DLHEFLRARSPKADKLASGQDTP  597 (774)
T ss_pred             --eEEEEEEEcc------------------------------CCeeEEEEEecccc-cHHHHHHhhCCccccccCCCCCC
Confidence              9999999433                              56699999999999 9999987                


Q ss_pred             --CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC
Q 013230          267 --LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE  344 (447)
Q Consensus       267 --l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~  344 (447)
                        ++..+...|+.||+.|+.||-+ +.+|||||-..|.||..+-                    .|||+||||+|..-..
T Consensus       598 ~~L~~~q~L~iA~QIAaGM~YLs~-~~FVHRDLATRNCLVge~l--------------------~VKIsDfGLsRdiYss  656 (774)
T KOG1026|consen  598 PPLSTSQFLHIATQIAAGMEYLSS-HHFVHRDLATRNCLVGENL--------------------VVKISDFGLSRDIYSS  656 (774)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh-Ccccccchhhhhceeccce--------------------EEEecccccchhhhhh
Confidence              5677889999999999999999 9999999999999999986                    8999999999875433


Q ss_pred             ------CE-EEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCC-CCCChhHHHHHHHHHHhhccCCCCCccchHHH
Q 013230          345 ------DI-FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGS-FPKTNVLWLVYLVDMLLLKKTFDRSSKDERDL  416 (447)
Q Consensus       345 ------g~-i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~-~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l  416 (447)
                            |- .+.--+|.||-....+.+..+|||+ .|++.++.|+-. .|++.....+.+.. +.....++.+...+.++
T Consensus       657 DYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs-~GVvLWEIFsyG~QPy~glSn~EVIe~-i~~g~lL~~Pe~CP~~v  734 (774)
T KOG1026|consen  657 DYYKVRGNTLLPIRWMPPESILYGKFTTESDVWS-FGVVLWEIFSYGKQPYYGLSNQEVIEC-IRAGQLLSCPENCPTEV  734 (774)
T ss_pred             hhhcccCCceeeeecCCHHHhhcCcccchhhhhh-hhhhhhhhhccccCcccccchHHHHHH-HHcCCcccCCCCCCHHH
Confidence                  22 3333489999877778888899999 999999988765 67766544333333 33345688889999999


Q ss_pred             HHHHHHhcccc
Q 013230          417 RSLKKRLDKYN  427 (447)
Q Consensus       417 ~dLl~~mL~~d  427 (447)
                      .+|+.+|.+.+
T Consensus       735 Y~LM~~CW~~~  745 (774)
T KOG1026|consen  735 YSLMLECWNEN  745 (774)
T ss_pred             HHHHHHHhhcC
Confidence            99999999998

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.94  E-value=2.6e-26  Score=249.96  Aligned_cols=227  Identities=22%  Similarity=0.266  Sum_probs=186.6

Q ss_pred             cceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccc
Q 013230          135 ENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACT  203 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~  203 (447)
                      ++...||+|+||.||.|.           .||+|.++..       .+.+...++++|..+|+.++|        ||   
T Consensus       695 ~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~-------~~~~~~~~Fl~Ea~~m~~f~H--------pN---  756 (1025)
T KOG1095|consen  695 TLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRL-------SSEQEVSDFLKEALLMSKFDH--------PN---  756 (1025)
T ss_pred             EeeeeeccccccceEEEEEecCCCCccceEEEEEecccc-------CCHHHHHHHHHHHHHHhcCCC--------cc---
Confidence            677899999999999996           2888887643       344556889999999999999        89   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----------CCHHHH
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----------LNINEA  272 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----------l~~~~~  272 (447)
                       ||+++++..                              +....+|++|||+|| ||..|++           ++....
T Consensus       757 -iv~liGv~l------------------------------~~~~~~i~leyM~gG-DL~sflr~~r~~~~~~~~L~~~dL  804 (1025)
T KOG1095|consen  757 -IVSLIGVCL------------------------------DSGPPLILLEYMEGG-DLLSFLRESRPAPFQPSNLSMRDL  804 (1025)
T ss_pred             -eeeEEEeec------------------------------CCCCcEEEehhcccC-cHHHHHHhcccccCCCCCCCHHHH
Confidence             999999943                              355689999999999 9999997           889999


Q ss_pred             HHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCC------CCE
Q 013230          273 RSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG------EDI  346 (447)
Q Consensus       273 ~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~------~g~  346 (447)
                      ..++.||+.|+.||++ +++|||||-..|+||+...                    .|||+|||+||....      .|.
T Consensus       805 l~~a~dvA~G~~YLe~-~~fvHRDLAaRNCLL~~~r--------------------~VKIaDFGlArDiy~~~yyr~~~~  863 (1025)
T KOG1095|consen  805 LAFALDVAKGMNYLES-KHFVHRDLAARNCLLDERR--------------------VVKIADFGLARDIYDKDYYRKHGE  863 (1025)
T ss_pred             HHHHHHHhhhhHHHHh-CCCcCcchhhhheeecccC--------------------cEEEcccchhHhhhhchheeccCc
Confidence            9999999999999999 9999999999999999996                    799999999994322      243


Q ss_pred             -EEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCC-CCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhc
Q 013230          347 -FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGS-FPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLD  424 (447)
Q Consensus       347 -i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~-~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL  424 (447)
                       ..---+|+||.|.......+.|+|+ +|+..+|.++.. .||.+....+.+...+.+. +++.|...+..+-++|..|+
T Consensus       864 a~lPvkWm~PEsl~d~iFtskSDvWs-FGVllWEifslG~~PY~~~~n~~v~~~~~~gg-RL~~P~~CP~~ly~lM~~CW  941 (1025)
T KOG1095|consen  864 AMLPVKWMPPESLKDGIFTSKSDVWS-FGVLLWEIFSLGATPYPSRSNFEVLLDVLEGG-RLDPPSYCPEKLYQLMLQCW  941 (1025)
T ss_pred             cccceecCCHHHHhhcccccccchhh-hHHHHHHHHhCCCCCCCCcchHHHHHHHHhCC-ccCCCCCCChHHHHHHHHHc
Confidence             1112289999998767788889999 999999887765 6777665544444444433 78888889999999999999


Q ss_pred             ccc-----CHHHHHc
Q 013230          425 KYN-----SAKEAIF  434 (447)
Q Consensus       425 ~~d-----sa~elL~  434 (447)
                      +-+     +...++.
T Consensus       942 ~~~pe~RP~F~~i~~  956 (1025)
T KOG1095|consen  942 KHDPEDRPSFRTIVE  956 (1025)
T ss_pred             cCChhhCccHHHHHh
Confidence            998     5555543

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.94  E-value=9.7e-26  Score=221.50  Aligned_cols=240  Identities=11%  Similarity=0.063  Sum_probs=155.3

Q ss_pred             CcceEEeccccceEEEEece---------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          134 PENIVKVGEGTFGEAFLAGN---------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~---------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      |++.++||+|+||.||+|..         +|+|+......................++..+..+....|     +|    
T Consensus        14 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h-----~~----   84 (294)
T PHA02882         14 WKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDH-----LG----   84 (294)
T ss_pred             eEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCC-----CC----
Confidence            59999999999999999962         4555433221100000000000001122333333333222     55    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVT  280 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil  280 (447)
                      ++.+++.......                          .....|++|+++.  .++.+++.    +++..++.++.|++
T Consensus        85 i~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~qi~  136 (294)
T PHA02882         85 IPKYYGCGSFKRC--------------------------RMYYRFILLEKLV--ENTKEIFKRIKCKNKKLIKNIMKDML  136 (294)
T ss_pred             CCcEEEeeeEecC--------------------------CceEEEEEEehhc--cCHHHHHHhhccCCHHHHHHHHHHHH
Confidence            8888886432110                          0113477888775  24544443    67888999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------------EEE
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------------IFF  348 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------------~i~  348 (447)
                      .||+|||+ .+|+||||||+|||++.++                    .++|+|||+|+.....+            ...
T Consensus       137 ~~l~~lH~-~~iiHrDiKp~Nill~~~~--------------------~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~g  195 (294)
T PHA02882        137 TTLEYIHE-HGISHGDIKPENIMVDGNN--------------------RGYIIDYGIASHFIIHGKHIEYSKEQKDLHRG  195 (294)
T ss_pred             HHHHHHHh-CCeecCCCCHHHEEEcCCC--------------------cEEEEEcCCceeeccCCcccccccccccccCC
Confidence            99999999 9999999999999998876                    79999999998653221            112


Q ss_pred             EecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHH----HH-H---HHHHHhhccCCCCCccchHHHHHHH
Q 013230          349 LDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLW----LV-Y---LVDMLLLKKTFDRSSKDERDLRSLK  420 (447)
Q Consensus       349 ~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~----~~-~---~~~~l~~~~~~~~~~~~s~~l~dLl  420 (447)
                      ...|++|+.+.+...+.+.|||+ +|.+.+++.++..||.....    .. .   ....+... ... ....++++.+++
T Consensus       196 t~~y~ape~~~~~~~~~~~DiwS-lG~~l~el~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~  272 (294)
T PHA02882        196 TLYYAGLDAHNGACVTRRGDLES-LGYCMLKWAGIKLPWKGFGHNGNLIHAAKCDFIKRLHEG-KIK-IKNANKFIYDFI  272 (294)
T ss_pred             CccccCHHHhCCCCCCcHHHHHH-HHHHHHHHHhCCCCCCccccchHHHHHhHHHHHHHhhhh-hhc-cCCCCHHHHHHH
Confidence            33478899998888888889999 89999999999999864411    11 0   11111111 111 133578999999


Q ss_pred             HHhcccc-----CHHHHHc
Q 013230          421 KRLDKYN-----SAKEAIF  434 (447)
Q Consensus       421 ~~mL~~d-----sa~elL~  434 (447)
                      +.|+..+     +.+++++
T Consensus       273 ~~~~~~~~~~rp~~~~l~~  291 (294)
T PHA02882        273 ECVTKLSYEEKPDYDALIK  291 (294)
T ss_pred             HHHHhCCCCCCCCHHHHHH
Confidence            9999988     7777764

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=2.9e-26  Score=231.19  Aligned_cols=191  Identities=22%  Similarity=0.277  Sum_probs=154.0

Q ss_pred             chhhhhhccCCCcceEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCC
Q 013230          123 KLLDLFSKYSDPENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGD  197 (447)
Q Consensus       123 ~~~~~~~~y~~~~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~  197 (447)
                      +..++.....+|..-..||+|+||.||+|.     .||||.+....       .+. ..++.+|+.++.+++|       
T Consensus        66 s~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~-------~~~-~~eF~~Ei~~ls~l~H-------  130 (361)
T KOG1187|consen   66 SYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNS-------GQG-EREFLNEVEILSRLRH-------  130 (361)
T ss_pred             eHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCC-------Ccc-hhHHHHHHHHHhcCCC-------
Confidence            444555544566777899999999999997     49999665332       111 3559999999999998       


Q ss_pred             CCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCC-ceEEEEEEecCccchhhhhc------CCHH
Q 013230          198 TLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPEN-QRYIVFVLQHGGKDLESFVL------LNIN  270 (447)
Q Consensus       198 ~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ivmE~~~gG~~L~~~i~------l~~~  270 (447)
                       ||    +|+|++++..                              .+ +.++|+||+.+| +|.+.+.      +++.
T Consensus       131 -~N----lv~LlGyC~e------------------------------~~~~~~LVYEym~nG-sL~d~L~~~~~~~L~W~  174 (361)
T KOG1187|consen  131 -PN----LVKLLGYCLE------------------------------GGEHRLLVYEYMPNG-SLEDHLHGKKGEPLDWE  174 (361)
T ss_pred             -cC----cccEEEEEec------------------------------CCceEEEEEEccCCC-CHHHHhCCCCCCCCCHH
Confidence             88    9999999543                              33 589999999999 9999876      5899


Q ss_pred             HHHHHHHHHHHHHHHHHHhCC--eeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCC-CCEE
Q 013230          271 EARSLLVQVTAGLAVAEAAYE--FEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG-EDIF  347 (447)
Q Consensus       271 ~~~~i~~Qil~gL~ylH~~~~--iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~-~g~i  347 (447)
                      ....|+.+++.||+|||..+.  ||||||||+|||||.+.                    .+||+|||+|+.... ...+
T Consensus       175 ~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~--------------------~aKlsDFGLa~~~~~~~~~~  234 (361)
T KOG1187|consen  175 TRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDF--------------------NAKLSDFGLAKLGPEGDTSV  234 (361)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCC--------------------CEEccCccCcccCCccccce
Confidence            999999999999999997564  99999999999999886                    899999999987765 3222


Q ss_pred             E-----EecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCC
Q 013230          348 F-----LDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSF  385 (447)
Q Consensus       348 ~-----~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~  385 (447)
                      .     ..-|++||++.......+.|+|+ +|++..++.+|..
T Consensus       235 ~~~~~gt~gY~~PEy~~~g~lt~KsDVyS-FGVvllElitgr~  276 (361)
T KOG1187|consen  235 STTVMGTFGYLAPEYASTGKLTEKSDVYS-FGVVLLELITGRK  276 (361)
T ss_pred             eeecCCCCccCChhhhccCCcCccccccc-chHHHHHHHhCCc
Confidence            1     12278999998767777889999 9998888877763

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.93  E-value=5.2e-26  Score=204.43  Aligned_cols=182  Identities=18%  Similarity=0.224  Sum_probs=148.2

Q ss_pred             cceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      ..+..||+|+||.|-+-++      .|+|.++..-       ..+...+.++|+.+..+...           ||.+|++
T Consensus        49 ~~i~elGrGayG~vekmrh~~sg~imAvKri~~tv-------n~q~q~r~L~dldi~~r~~~-----------CPf~V~F  110 (282)
T KOG0984|consen   49 VGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATV-------NSQEQKRLLMDLDIIMRTVD-----------CPFTVHF  110 (282)
T ss_pred             hhhhhhcCCccchhhheeeccCCeEEEEeeehhhc-------ChHHHHHHHHhhhhhccCCC-----------CCeEEEe
Confidence            5668899999999987764      8999887542       22333567888887766543           8889999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQVT  280 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Qil  280 (447)
                      |+.+.                              .+..+||+||.|+  .+|..+.+        .++..+-.|+..++
T Consensus       111 yGa~~------------------------------regdvwIcME~M~--tSldkfy~~v~~~g~~ipE~vlGkIa~Svv  158 (282)
T KOG0984|consen  111 YGALF------------------------------REGDVWICMELMD--TSLDKFYRKVLKKGGTIPEDVLGKIAVSVV  158 (282)
T ss_pred             ehhhh------------------------------ccccEEEeHHHhh--hhHHHHHHHHHhcCCcCchHHhhHhHHHHH
Confidence            99843                              3667999999998  78988765        89999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-------CEEEEecCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-------DIFFLDLSQ  353 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-------g~i~~~~~~  353 (447)
                      .||.|||+...|||||+||+||||+.++                    +|||||||.|-...+.       ||   .-||
T Consensus       159 ~al~~L~~kL~vIHRDvKPsNiLIn~~G--------------------qVKiCDFGIsG~L~dSiAkt~daGC---kpYm  215 (282)
T KOG0984|consen  159 HALEFLHSKLSVIHRDVKPSNILINYDG--------------------QVKICDFGISGYLVDSIAKTMDAGC---KPYM  215 (282)
T ss_pred             HHHHHHHHHhhhhhccCCcceEEEccCC--------------------cEEEcccccceeehhhhHHHHhcCC---CccC
Confidence            9999999889999999999999999999                    8999999999876544       55   5679


Q ss_pred             CCCCCCCCC----CCchHHHHHhhccCCcccccCCCCCChh
Q 013230          354 DPELFSGPK----GDKQFDTYRKMKKVTEDQWEGSFPKTNV  390 (447)
Q Consensus       354 ~pelf~g~~----~~~~~di~s~lg~~~~~~~~~~~p~~~~  390 (447)
                      +||...+..    ++-+.|+|+ +|....++..+.+|+.+-
T Consensus       216 aPEri~~e~n~~gY~vksDvWS-LGItmiElA~lr~PY~~w  255 (282)
T KOG0984|consen  216 APERINPELNQKGYSVKSDVWS-LGITMIEMAILRFPYESW  255 (282)
T ss_pred             ChhhcCcccCcccceeehhhhh-hhhhhhhhhhcccccccc
Confidence            999885432    334459999 999999999999888653

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=1.9e-27  Score=221.32  Aligned_cols=240  Identities=20%  Similarity=0.310  Sum_probs=162.1

Q ss_pred             cceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      +..+.||-|+||.||-+.+      ||+|+++.-.      ..-...+++.+|+.+|-.++|        .|    +...
T Consensus        56 ~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvf------q~L~s~krvFre~kmLcfFkH--------dN----VLSa  117 (449)
T KOG0664|consen   56 QPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVF------QNLASCKRVFREIKMLSSFRH--------DN----VLSL  117 (449)
T ss_pred             CCCCcccccceeEEEeccCCCCccchhHhhcchHH------HHHHHHHHHHHHHHHHHhhcc--------cc----HHHH
Confidence            6668899999999998763      8888776321      122234678999999999988        88    8888


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~  284 (447)
                      +|+..-                       -|+++|  +.+|.+.|++.  .||.++|.    ++.+.++.++.||++||+
T Consensus       118 LDILQP-----------------------ph~dfF--qEiYV~TELmQ--SDLHKIIVSPQ~Ls~DHvKVFlYQILRGLK  170 (449)
T KOG0664|consen  118 LDILQP-----------------------ANPSFF--QELYVLTELMQ--SDLHKIIVSPQALTPDHVKVFVYQILRGLK  170 (449)
T ss_pred             HHhcCC-----------------------CCchHH--HHHHHHHHHHH--hhhhheeccCCCCCcchhhhhHHHHHhhhH
Confidence            887211                       111222  23888999997  59999886    999999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE------EEEecCCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI------FFLDLSQDPELF  358 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~------i~~~~~~~pelf  358 (447)
                      |||+ .+|.||||||+|+|++++.                    .+||||||+||.......      +....|.+||+.
T Consensus       171 YLHs-A~ILHRDIKPGNLLVNSNC--------------------vLKICDFGLARvee~d~~~hMTqEVVTQYYRAPEiL  229 (449)
T KOG0664|consen  171 YLHT-ANILHRDIKPGNLLVNSNC--------------------ILKICDFGLARTWDQRDRLNMTHEVVTQYYRAPELL  229 (449)
T ss_pred             HHhh-cchhhccCCCccEEeccCc--------------------eEEecccccccccchhhhhhhHHHHHHHHhccHHHh
Confidence            9999 9999999999999999997                    799999999998654411      223345566665


Q ss_pred             CCCCCCchH-HHHHhhccCCcccccCCC------CCChh------------HHHHHH-----HHHHhhccCCCC------
Q 013230          359 SGPKGDKQF-DTYRKMKKVTEDQWEGSF------PKTNV------------LWLVYL-----VDMLLLKKTFDR------  408 (447)
Q Consensus       359 ~g~~~~~~~-di~s~lg~~~~~~~~~~~------p~~~~------------~~~~~~-----~~~l~~~~~~~~------  408 (447)
                      .|....... |||+ .|++-.+.+....      |....            .-+++.     ..++......|.      
T Consensus       230 MGaRhYs~AvDiWS-VGCIFaELLgRrILFQAq~PiqQL~lItdLLGTPs~EaMr~ACEGAk~H~LR~~~k~Ps~~vLYt  308 (449)
T KOG0664|consen  230 MGARRYTGAVDIWS-VGCIFAELLQRKILFQAAGPIEQLQMIIDLLGTPSQEAMKYACEGAKNHVLRAGLRAPDTQRLYK  308 (449)
T ss_pred             hcchhhcCccceeh-hhHHHHHHHhhhhhhhccChHHHHHHHHHHhCCCcHHHHHHHhhhhHHHhhccCCCCCCccceee
Confidence            554333322 6665 5544333332211      11000            001111     111211111111      


Q ss_pred             ---CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCC
Q 013230          409 ---SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       409 ---~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~  441 (447)
                         +.....++.+++.+||.+|     +.++++.|++..+.
T Consensus       309 lsS~~~~~heav~~~~~~l~~d~dkris~~~A~~~~~~~e~  349 (449)
T KOG0664|consen  309 IASPDDKNHEAVDLLQKLLHFDPDKRISVEEALQHRYLEEG  349 (449)
T ss_pred             ecCCcccchHHHHHHHHHhCCCCcccccHhhhccccccccc
Confidence               2244678999999999999     88889999987654

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.92  E-value=6.8e-26  Score=232.14  Aligned_cols=236  Identities=20%  Similarity=0.226  Sum_probs=184.9

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+.+..+|.|+||.||+|++      .|+|+|+..-..        ....+..|+-+++..+|        +|    ||
T Consensus        16 dyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~d--------d~~~iqqei~~~~dc~h--------~n----iv   75 (829)
T KOG0576|consen   16 DYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGD--------DFSGIQQEIGMLRDCRH--------PN----IV   75 (829)
T ss_pred             chhheeeecCCcccchhhhcccccCchhhheeeeccCCc--------cccccccceeeeecCCC--------cC----hH
Confidence            469999999999999999996      899999876432        22446778999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      .+++.|..                              .+.++|+||||.|| +|.+.-.    +++.++....+..+.|
T Consensus        76 ay~gsylr------------------------------~dklwicMEycggg-slQdiy~~TgplselqiayvcRetl~g  124 (829)
T KOG0576|consen   76 AYFGSYLR------------------------------RDKLWICMEYCGGG-SLQDIYHVTGPLSELQIAYVCRETLQG  124 (829)
T ss_pred             HHHhhhhh------------------------------hcCcEEEEEecCCC-cccceeeecccchhHHHHHHHhhhhcc
Confidence            99988543                              56799999999988 8887655    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCC-----CCEEEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG-----EDIFFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~-----~g~i~~~~~~~pel  357 (447)
                      |+|||+ .|=+|||||-.|||+...+                    .+|++|||.+..++.     ...+....+|+||+
T Consensus       125 l~ylhs-~gk~hRdiKGanilltd~g--------------------DvklaDfgvsaqitati~KrksfiGtpywmapEv  183 (829)
T KOG0576|consen  125 LKYLHS-QGKIHRDIKGANILLTDEG--------------------DVKLADFGVSAQITATIAKRKSFIGTPYWMAPEV  183 (829)
T ss_pred             chhhhc-CCcccccccccceeecccC--------------------ceeecccCchhhhhhhhhhhhcccCCccccchhH
Confidence            999999 9999999999999999998                    799999999866543     24455666788887


Q ss_pred             CCC--C-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHH---HHHhhccCCCCCccchHHHHHHHHHhcccc----
Q 013230          358 FSG--P-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLV---DMLLLKKTFDRSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       358 f~g--~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~---~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      -.-  . .+...+|+|+ +|.+..+.-.-..|.....-++.+.   +...+...+.....+++-|-+|++.+|.++    
T Consensus       184 aaverkggynqlcdiwa-~gitAiel~eLqpplfdlhpmr~l~LmTkS~~qpp~lkDk~kws~~fh~fvK~altknpKkR  262 (829)
T KOG0576|consen  184 AAVERKGGYNQLCDIWA-LGITAIELGELQPPLFDLHPMRALFLMTKSGFQPPTLKDKTKWSEFFHNFVKGALTKNPKKR  262 (829)
T ss_pred             HHHHhcccccccccccc-cccchhhhhhcCCcccccchHHHHHHhhccCCCCCcccCCccchHHHHHHHHHHhcCCCccC
Confidence            621  1 3344559999 8877666665556665543333322   222222333445678999999999999999    


Q ss_pred             -CHHHHHcCCCCCCC
Q 013230          428 -SAKEAIFDPFFSDL  441 (447)
Q Consensus       428 -sa~elL~HPff~~~  441 (447)
                       ||+.+|+|||...-
T Consensus       263 ptaeklL~h~fvs~~  277 (829)
T KOG0576|consen  263 PTAEKLLQHPFVSQT  277 (829)
T ss_pred             CChhhheeceeeccc
Confidence             99999999998753

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.91  E-value=4e-25  Score=224.68  Aligned_cols=219  Identities=21%  Similarity=0.254  Sum_probs=175.4

Q ss_pred             cceEEeccccceEEEEec----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          135 ENIVKVGEGTFGEAFLAG----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      ..-++||+|.||.||+|.          .||||..+.+.       .....+.++.|..+|+.++|        ||    
T Consensus       392 tl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~-------t~d~tekflqEa~iMrnfdH--------ph----  452 (974)
T KOG4257|consen  392 TLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDC-------TPDDTEKFLQEASIMRNFDH--------PH----  452 (974)
T ss_pred             cHHHhhcCCcccceeeeEecccccCcceeeeeehhccCC-------ChhhHHHHHHHHHHHHhCCC--------cc----
Confidence            566789999999999996          39999887542       23345789999999999999        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQV  279 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qi  279 (447)
                      ||+++++..                               ++.+|||||++..| .|..+++     ++......+..||
T Consensus       453 IikLIGv~~-------------------------------e~P~WivmEL~~~G-ELr~yLq~nk~sL~l~tL~ly~~Qi  500 (974)
T KOG4257|consen  453 IIKLIGVCV-------------------------------EQPMWIVMELAPLG-ELREYLQQNKDSLPLRTLTLYCYQI  500 (974)
T ss_pred             hhheeeeee-------------------------------ccceeEEEecccch-hHHHHHHhccccchHHHHHHHHHHH
Confidence            999999954                               45699999999999 9999987     8888899999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEEEE------ecCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFL------DLSQ  353 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i~~------~~~~  353 (447)
                      +.||+|||+ ..+|||||-..|||+.+..                    .|||+|||+||...+....-+      --+|
T Consensus       501 ~talaYLeS-krfVHRDIAaRNiLVsSp~--------------------CVKLaDFGLSR~~ed~~yYkaS~~kLPIKWm  559 (974)
T KOG4257|consen  501 CTALAYLES-KRFVHRDIAARNILVSSPQ--------------------CVKLADFGLSRYLEDDAYYKASRGKLPIKWM  559 (974)
T ss_pred             HHHHHHHHh-hchhhhhhhhhheeecCcc--------------------eeeecccchhhhccccchhhccccccceeec
Confidence            999999999 9999999999999999997                    799999999999877642111      1278


Q ss_pred             CCCCCCCCCCCchHHHHHhhccCCcccc-cCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc
Q 013230          354 DPELFSGPKGDKQFDTYRKMKKVTEDQW-EGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       354 ~pelf~g~~~~~~~di~s~lg~~~~~~~-~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d  427 (447)
                      +||-..-.......|+|- +|+..++.+ -|.-||..+.....+ ..+-...++|.|.+.++.+-.|+.+|..||
T Consensus       560 aPESINfRrFTtASDVWM-FgVCmWEIl~lGvkPfqgvkNsDVI-~~iEnGeRlP~P~nCPp~LYslmskcWaye  632 (974)
T KOG4257|consen  560 APESINFRRFTTASDVWM-FGVCMWEILSLGVKPFQGVKNSDVI-GHIENGERLPCPPNCPPALYSLMSKCWAYE  632 (974)
T ss_pred             CccccchhcccchhhHHH-HHHHHHHHHHhcCCccccccccceE-EEecCCCCCCCCCCCChHHHHHHHHHhccC
Confidence            888776655666679996 887766654 345777554322111 122234678888999999999999999999

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.91  E-value=1.2e-24  Score=223.75  Aligned_cols=218  Identities=20%  Similarity=0.221  Sum_probs=177.9

Q ss_pred             cceEEeccccceEEEEec---------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccce
Q 013230          135 ENIVKVGEGTFGEAFLAG---------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~---------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~i  205 (447)
                      .+.++||+|.||.|++|.         +||||.++.+..      . .....+++|+.+|.+|+|        +|    +
T Consensus       113 ~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l------~-~~mddflrEas~M~~L~H--------~h----l  173 (1039)
T KOG0199|consen  113 KLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSL------N-AIMDDFLREASHMLKLQH--------PH----L  173 (1039)
T ss_pred             HHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCcc------c-hhHHHHHHHHHHHHhccC--------cc----e
Confidence            556999999999999996         499999986532      1 256889999999999999        88    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQV  279 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qi  279 (447)
                      |+||++..                               +..+.+|||++.+| +|.+-+.      |.......|+.||
T Consensus       174 iRLyGvVl-------------------------------~qp~mMV~ELaplG-SLldrLrka~~~~llv~~Lcdya~Qi  221 (1039)
T KOG0199|consen  174 IRLYGVVL-------------------------------DQPAMMVFELAPLG-SLLDRLRKAKKAILLVSRLCDYAMQI  221 (1039)
T ss_pred             eEEeeeec-------------------------------cchhhHHhhhcccc-hHHHHHhhccccceeHHHHHHHHHHH
Confidence            99999832                               25588999999999 7766654      7788899999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEEEEec--------
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDL--------  351 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i~~~~--------  351 (447)
                      +.|+.||.+ .++|||||-..|||+....                    .|||+||||.|....+.-.| .|        
T Consensus       222 A~aM~YLes-krlvHRDLAARNlllaspr--------------------tVKI~DFGLmRaLg~ned~Y-vm~p~rkvPf  279 (1039)
T KOG0199|consen  222 AKAMQYLES-KRLVHRDLAARNLLLASPR--------------------TVKICDFGLMRALGENEDMY-VMAPQRKVPF  279 (1039)
T ss_pred             HHHHHHHhh-hhhhhhhhhhhhheecccc--------------------eeeeecccceeccCCCCcce-EecCCCcCcc
Confidence            999999999 9999999999999999976                    79999999999887654322 22        


Q ss_pred             -CCCCCCCCCCCCCchHHHHHhhccCCcccccCC-CCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc
Q 013230          352 -SQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGS-FPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       352 -~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~-~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d  427 (447)
                       +.+||-....+.....|+|. .|+..++|++.. .|+....-...+..+ -....+++++..++++-++++.|...+
T Consensus       280 AWCaPEsLrh~kFShaSDvWm-yGVTiWEMFtyGEePW~G~~g~qIL~~i-D~~erLpRPk~csedIY~imk~cWah~  355 (1039)
T KOG0199|consen  280 AWCAPESLRHRKFSHASDVWM-YGVTIWEMFTYGEEPWVGCRGIQILKNI-DAGERLPRPKYCSEDIYQIMKNCWAHN  355 (1039)
T ss_pred             cccCHhHhccccccccchhhh-hhhhHHhhhccCCCCCCCCCHHHHHHhc-cccccCCCCCCChHHHHHHHHHhccCC
Confidence             67788777767777889998 999998888765 566554333333333 356788999999999999999999988

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.91  E-value=4.3e-24  Score=216.03  Aligned_cols=226  Identities=21%  Similarity=0.230  Sum_probs=171.9

Q ss_pred             cceEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeee
Q 013230          135 ENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMF  209 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~  209 (447)
                      .+.++||+|.||+|.+|.     .||+|.++-..       ......++.+||++|.+|+|        ||    ||+++
T Consensus       541 ~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a-------~~~~r~~F~kEIkiLsqLkh--------PN----IveLv  601 (807)
T KOG1094|consen  541 RFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDA-------TKNARNDFLKEIKILSRLKH--------PN----IVELL  601 (807)
T ss_pred             ehhhhhcCcccceeEEEEecCceEEEEeecCccc-------chhHHHHHHHHHHHHhccCC--------CC----eeEEE
Confidence            678999999999999997     48999877432       12224789999999999999        88    99999


Q ss_pred             eEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHHH
Q 013230          210 EIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAGL  283 (447)
Q Consensus       210 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~gL  283 (447)
                      ++++.                              ++.++++|||+++| ||.+|+.      ..-....++..||+.|+
T Consensus       602 GVC~~------------------------------DePicmI~EYmEnG-DLnqFl~aheapt~~t~~~vsi~tqiasgm  650 (807)
T KOG1094|consen  602 GVCVQ------------------------------DDPLCMITEYMENG-DLNQFLSAHELPTAETAPGVSICTQIASGM  650 (807)
T ss_pred             eeeec------------------------------CCchHHHHHHHhcC-cHHHHHHhccCcccccchhHHHHHHHHHHH
Confidence            99654                              56699999999999 9999987      23344556999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------CE-EEEecCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------DI-FFLDLSQDPE  356 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g~-i~~~~~~~pe  356 (447)
                      +||.+ ++||||||-+.|+|++.+.                    .+||+|||+||..-..      |- ++---+|++|
T Consensus       651 aYLes-~nfVHrd~a~rNcLv~~e~--------------------~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawE  709 (807)
T KOG1094|consen  651 AYLES-LNFVHRDLATRNCLVDGEF--------------------TIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWE  709 (807)
T ss_pred             HHHHh-hchhhccccccceeecCcc--------------------cEEecCcccccccccCCceeeecceeeeeeehhHH
Confidence            99999 9999999999999999997                    8999999999954333      22 3333478887


Q ss_pred             CCCCCCCCchHHHHHhhccCCcccccCC--CCCChhHHHHH---HHHHHhhc---cCCCCCccchHHHHHHHHHhcccc-
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWEGS--FPKTNVLWLVY---LVDMLLLK---KTFDRSSKDERDLRSLKKRLDKYN-  427 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~~~--~p~~~~~~~~~---~~~~l~~~---~~~~~~~~~s~~l~dLl~~mL~~d-  427 (447)
                      -.--.+.....|+|+ +|+..+++....  .|+......+.   ....+...   ..++.|.-.+.++-.|+-+|..+| 
T Consensus       710 sillgkFttaSDvWa-fgvTlwE~~~~C~e~Py~~lt~e~vven~~~~~~~~~~~~~l~~P~~cp~~lyelml~Cw~~es  788 (807)
T KOG1094|consen  710 SILLGKFTTASDVWA-FGVTLWEVFMLCREQPYSQLTDEQVVENAGEFFRDQGRQVVLSRPPACPQGLYELMLRCWRRES  788 (807)
T ss_pred             HHHhccccchhhhhh-hHHHHHHHHHHHhhCchhhhhHHHHHHhhhhhcCCCCcceeccCCCcCcHHHHHHHHHHhchhh
Confidence            665547777889999 888877765443  67655432221   12222111   234456667889999999999998 


Q ss_pred             ----CHHHH
Q 013230          428 ----SAKEA  432 (447)
Q Consensus       428 ----sa~el  432 (447)
                          |.+++
T Consensus       789 ~~RPsFe~l  797 (807)
T KOG1094|consen  789 EQRPSFEQL  797 (807)
T ss_pred             hcCCCHHHH
Confidence                66665

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.91  E-value=1.5e-24  Score=225.56  Aligned_cols=221  Identities=18%  Similarity=0.190  Sum_probs=183.3

Q ss_pred             CcceEEeccccceEEEEec---------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          134 PENIVKVGEGTFGEAFLAG---------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~---------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      ..+.+.||.|.||+|++|+         .||||.++..       -.++...+++.|+.||-+++|        ||    
T Consensus       631 i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~G-------ytekqrrdFL~EAsIMGQFdH--------PN----  691 (996)
T KOG0196|consen  631 VKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAG-------YTEKQRRDFLSEASIMGQFDH--------PN----  691 (996)
T ss_pred             eEEEEEEecccccceecccccCCCCcceeEEEeeeccC-------ccHHHHhhhhhhhhhcccCCC--------Cc----
Confidence            3678899999999999997         3999998754       455566889999999999999        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQV  279 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qi  279 (447)
                      ||+|.++.                              ....-++||.|||++| .|+.|++     |+.-++.-+++.|
T Consensus       692 IIrLEGVV------------------------------Tks~PvMIiTEyMENG-sLDsFLR~~DGqftviQLVgMLrGI  740 (996)
T KOG0196|consen  692 IIRLEGVV------------------------------TKSKPVMIITEYMENG-SLDSFLRQNDGQFTVIQLVGMLRGI  740 (996)
T ss_pred             EEEEEEEE------------------------------ecCceeEEEhhhhhCC-cHHHHHhhcCCceEeehHHHHHHHH
Confidence            99999982                              2245589999999999 9999998     8888999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-EE-------EEec
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-IF-------FLDL  351 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-~i-------~~~~  351 (447)
                      +.|++||-+ ++.|||||-..|||++.+-                    .+|++||||||...++. ..       .---
T Consensus       741 AsGMkYLsd-m~YVHRDLAARNILVNsnL--------------------vCKVsDFGLSRvledd~~~~ytt~GGKIPiR  799 (996)
T KOG0196|consen  741 ASGMKYLSD-MNYVHRDLAARNILVNSNL--------------------VCKVSDFGLSRVLEDDPEAAYTTLGGKIPIR  799 (996)
T ss_pred             HHHhHHHhh-cCchhhhhhhhheeeccce--------------------EEEeccccceeecccCCCccccccCCcccee
Confidence            999999999 9999999999999999995                    89999999999875442 11       1122


Q ss_pred             CCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc
Q 013230          352 SQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       352 ~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d  427 (447)
                      +++||...-.+.....|+|+ .|++.++..+ |..|+++....+.+..+- ..-.+|.|...+..+-.|+.-|.++|
T Consensus       800 WTAPEAIa~RKFTsASDVWS-yGIVmWEVmSyGERPYWdmSNQdVIkaIe-~gyRLPpPmDCP~aL~qLMldCWqkd  874 (996)
T KOG0196|consen  800 WTAPEAIAYRKFTSASDVWS-YGIVMWEVMSYGERPYWDMSNQDVIKAIE-QGYRLPPPMDCPAALYQLMLDCWQKD  874 (996)
T ss_pred             ecChhHhhhcccCchhhccc-cceEEEEecccCCCcccccchHHHHHHHH-hccCCCCCCCCcHHHHHHHHHHHHHH
Confidence            79999998888888889999 9988877554 458998765544444333 23477778889999999999999999

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.91  E-value=1e-23  Score=197.92  Aligned_cols=223  Identities=26%  Similarity=0.335  Sum_probs=173.4

Q ss_pred             cceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEEEEeCC
Q 013230          144 TFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGP  217 (447)
Q Consensus       144 ~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~~~~g~  217 (447)
                      +||.||+|..      +|+|++.....       ....+.+.+|+.+++.++|        +|    |+++++.+..   
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~-------~~~~~~~~~e~~~~~~l~~--------~~----i~~~~~~~~~---   58 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKI-------KKKRERILREISILKKLKH--------PN----IVRLYDVFED---   58 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEeccccc-------ccHHHHHHHHHHHHHhCCC--------Cc----HHHHHhheee---
Confidence            5899999973      89998764422       1115788999999999987        77    9999888543   


Q ss_pred             CchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHHHHhCCee
Q 013230          218 YDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVAEAAYEFE  293 (447)
Q Consensus       218 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~ylH~~~~ii  293 (447)
                                                 ....+++|||+.+| +|..++.    ++...+..++.|++.||.|||+ .+++
T Consensus        59 ---------------------------~~~~~l~~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~-~~i~  109 (244)
T smart00220       59 ---------------------------EDKLYLVMEYCDGG-DLFDLLKKRGRLSEDEARFYARQILSALEYLHS-NGII  109 (244)
T ss_pred             ---------------------------CCEEEEEEeCCCCC-CHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH-cCee
Confidence                                       46689999999977 9998876    6889999999999999999999 9999


Q ss_pred             eccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCCCCCCCCCCCchHHH
Q 013230          294 HRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDPELFSGPKGDKQFDT  369 (447)
Q Consensus       294 HrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~pelf~g~~~~~~~di  369 (447)
                      |+||+|.||+++.++                    .++|+|||++......    .......|++||.+.+...+.+.|+
T Consensus       110 h~~i~~~ni~~~~~~--------------------~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Di  169 (244)
T smart00220      110 HRDLKPENILLDEDG--------------------HVKLADFGLARQLDPGGLLTTFVGTPEYMAPEVLLGKGYGKAVDV  169 (244)
T ss_pred             cCCcCHHHeEECCCC--------------------cEEEccccceeeeccccccccccCCcCCCCHHHHccCCCCchhhH
Confidence            999999999999987                    7999999999876553    1222334778988877667777799


Q ss_pred             HHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCc-c-chHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          370 YRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSS-K-DERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       370 ~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~-~-~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                      |+ +|.+.++++.+..|+..........+.+.......... . ++.++.+++.+||..+     ++.++++||||
T Consensus       170 ~s-lG~~l~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~~~~~~~  244 (244)
T smart00220      170 WS-LGVILYELLTGKPPFPGDDQLLELFKKIGKPKPPFPPPEWKISPEAKDLIRKLLVKDPEKRLTAEEALQHPFF  244 (244)
T ss_pred             HH-HHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCCCCccccccCCHHHHHHHHHHccCCchhccCHHHHhhCCCC
Confidence            99 99999999999888765222222223322111111111 1 7789999999999988     99999999998

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.90  E-value=7.1e-24  Score=215.31  Aligned_cols=219  Identities=21%  Similarity=0.238  Sum_probs=175.9

Q ss_pred             CcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      ...-.+||-|.||.||.|.      .||||.++         ++-...++++.|+.+|+.++|        ||    +|+
T Consensus       269 ItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLK---------EDtMeveEFLkEAAvMKeikH--------pN----LVq  327 (1157)
T KOG4278|consen  269 ITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK---------EDTMEVEEFLKEAAVMKEIKH--------PN----LVQ  327 (1157)
T ss_pred             eeeeeccCCCcccceeeeeeeccceeeehhhhh---------hcchhHHHHHHHHHHHHhhcC--------cc----HHH
Confidence            4566899999999999986      38999876         333456899999999999999        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      |++++..                              +--+|||.|||..| +|.++++      ++.-....++.||..
T Consensus       328 LLGVCT~------------------------------EpPFYIiTEfM~yG-NLLdYLRecnr~ev~avvLlyMAtQIsS  376 (1157)
T KOG4278|consen  328 LLGVCTH------------------------------EPPFYIITEFMCYG-NLLDYLRECNRSEVPAVVLLYMATQISS  376 (1157)
T ss_pred             Hhhhhcc------------------------------CCCeEEEEecccCc-cHHHHHHHhchhhcchhHHHHHHHHHHH
Confidence            9999443                              45599999999999 8888887      677778889999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------CEEEEecCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------DIFFLDLSQDP  355 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g~i~~~~~~~p  355 (447)
                      |+.||.. .++|||||-..|.|+..+.                    .||++||||+|.++.+      |.-|---+++|
T Consensus       377 aMeYLEk-knFIHRDLAARNCLVgEnh--------------------iVKvADFGLsRlMtgDTYTAHAGAKFPIKWTAP  435 (1157)
T KOG4278|consen  377 AMEYLEK-KNFIHRDLAARNCLVGENH--------------------IVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP  435 (1157)
T ss_pred             HHHHHHH-hhhhhhhhhhhhccccccc--------------------eEEeeccchhhhhcCCceecccCccCcccccCc
Confidence            9999999 9999999999999999997                    7999999999998876      33333348899


Q ss_pred             CCCCCCCCCchHHHHHhhccCCcccccC-CCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWEG-SFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~~-~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d  427 (447)
                      |-..-....-+.|+|+ +|+.+++..+- ..|+.... ....++.+-..-+...+..+++..-.|++.|.+|+
T Consensus       436 EsLAyNtFSiKSDVWA-FGVLLWEIATYGMsPYPGid-lSqVY~LLEkgyRM~~PeGCPpkVYeLMraCW~Ws  506 (1157)
T KOG4278|consen  436 ESLAYNTFSIKSDVWA-FGVLLWEIATYGMSPYPGID-LSQVYGLLEKGYRMDGPEGCPPKVYELMRACWNWS  506 (1157)
T ss_pred             ccccccccccchhhHH-HHHHHHHHHhcCCCCCCCcc-HHHHHHHHhccccccCCCCCCHHHHHHHHHHhcCC
Confidence            9887766677779999 99888776543 35655432 22233444323355567788999999999999998

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.90  E-value=7.4e-24  Score=208.08  Aligned_cols=236  Identities=19%  Similarity=0.186  Sum_probs=169.7

Q ss_pred             CcceEEeccccceEEEEec---------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          134 PENIVKVGEGTFGEAFLAG---------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~---------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      |..+.+||+|+|+.||+|.         .||+|.+....          ...++..|+++|..+...       .|    
T Consensus        38 ~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts----------~p~ri~~El~~L~~~gG~-------~n----   96 (418)
T KOG1167|consen   38 YKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTS----------SPSRILNELEMLYRLGGS-------DN----   96 (418)
T ss_pred             hhhhccccccchhhhhhhhHhhhccccceEeeeeccccc----------CchHHHHHHHHHHHhccc-------hh----
Confidence            4899999999999999986         28999776442          336789999999999762       44    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-CCHHHHHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-LNINEARSLLVQVTAGL  283 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-l~~~~~~~i~~Qil~gL  283 (447)
                      |+.+.+++                              ..+++..+||||.+.- ...++.. ++..+++.+++.++.||
T Consensus        97 i~~~~~~~------------------------------rnnd~v~ivlp~~~H~-~f~~l~~~l~~~~i~~Yl~~ll~Al  145 (418)
T KOG1167|consen   97 IIKLNGCF------------------------------RNNDQVAIVLPYFEHD-RFRDLYRSLSLAEIRWYLRNLLKAL  145 (418)
T ss_pred             hhcchhhh------------------------------ccCCeeEEEecccCcc-CHHHHHhcCCHHHHHHHHHHHHHHh
Confidence            89998883                              3478899999999864 7777776 99999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC-----------------C-C-
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT-----------------G-E-  344 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~-----------------~-~-  344 (447)
                      +++|. +|||||||||+|+|.+....                   .-.|+|||+|....                 . . 
T Consensus       146 ~~~h~-~GIvHRDiKpsNFL~n~~t~-------------------rg~LvDFgLA~~~d~~~~~~~s~~~~~~~~~~~~g  205 (418)
T KOG1167|consen  146 AHLHK-NGIVHRDIKPSNFLYNRRTQ-------------------RGVLVDFGLAQRYDGYQQTEHSRSYSGRHATPAMG  205 (418)
T ss_pred             hhhhc-cCccccCCCccccccccccC-------------------CceEEechhHHHHHhhhhhhhhhhhhcccCCcccc
Confidence            99999 99999999999999998864                   67899999997211                 0 0 


Q ss_pred             ---------------CE---------------EEEecCCCCCCCCCCC-CCchHHHHHhhccCCcccccCCCCCChhHH-
Q 013230          345 ---------------DI---------------FFLDLSQDPELFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLW-  392 (447)
Q Consensus       345 ---------------g~---------------i~~~~~~~pelf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~-  392 (447)
                                     |.               ..+.-|.+||+..... .....|||+ .|++.....+..+||..... 
T Consensus       206 ~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiws-~GVI~Lslls~~~PFf~a~dd  284 (418)
T KOG1167|consen  206 KDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIWS-AGVILLSLLSRRYPFFKAKDD  284 (418)
T ss_pred             CcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCccceee-ccceeehhhccccccccCccc
Confidence                           10               0111156676554433 333459999 88887777777666653200 


Q ss_pred             ---HH---------------HHHHH--Hhh-------------ccCC----------------CCCccchHHHHHHHHHh
Q 013230          393 ---LV---------------YLVDM--LLL-------------KKTF----------------DRSSKDERDLRSLKKRL  423 (447)
Q Consensus       393 ---~~---------------~~~~~--l~~-------------~~~~----------------~~~~~~s~~l~dLl~~m  423 (447)
                         ..               .+.+.  +..             -..+                ......+..+.||+.+|
T Consensus       285 ~~al~ei~tifG~~~mrk~A~l~g~~~l~~ksn~~~~~e~~~~f~s~~~~~~~~~~q~n~~~~~~~d~~~~~~~dlLdk~  364 (418)
T KOG1167|consen  285 ADALAEIATIFGSAEMRKCAALPGRILLWQKSNIPTIPELRVNFETLHIESIYKSRQPNTEREIGSDVFPALLLDLLDKC  364 (418)
T ss_pred             cchHHHHHHHhChHHHHHHhhcCCceeeeccccccccHHHHhchhccChhhcccccccceeeccccccccHHHHHHHHHH
Confidence               00               00000  000             0000                00123456899999999


Q ss_pred             cccc-----CHHHHHcCCCCCCCC
Q 013230          424 DKYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       424 L~~d-----sa~elL~HPff~~~~  442 (447)
                      |..|     ||+++|+||||.+..
T Consensus       365 le~np~kRitAEeALkHpFF~~~~  388 (418)
T KOG1167|consen  365 LELNPQKRITAEDALKHPFFDEAD  388 (418)
T ss_pred             ccCChhhcccHHHHhcCcCCcchh
Confidence            9999     999999999998653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.89  E-value=4.5e-23  Score=233.85  Aligned_cols=223  Identities=13%  Similarity=0.174  Sum_probs=164.7

Q ss_pred             cceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      ...+.||+|+||.||+|+      .||+|.+.....            ....|+.++++++|        ||    ||++
T Consensus       693 ~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~------------~~~~~~~~l~~l~H--------pn----Iv~~  748 (968)
T PLN00113        693 KEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNS------------IPSSEIADMGKLQH--------PN----IVKL  748 (968)
T ss_pred             CcccEEccCCCeeEEEEEECCCCcEEEEEEccCCcc------------ccHHHHHHHhhCCC--------CC----cceE
Confidence            677899999999999997      389998753211            11356888999988        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-CCHHHHHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-LNINEARSLLVQVTAGLAVAE  287 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-l~~~~~~~i~~Qil~gL~ylH  287 (447)
                      ++++..                              ++..|+||||+++| +|.+++. +++..+..++.||+.||+|||
T Consensus       749 ~~~~~~------------------------------~~~~~lv~Ey~~~g-~L~~~l~~l~~~~~~~i~~~ia~~L~yLH  797 (968)
T PLN00113        749 IGLCRS------------------------------EKGAYLIHEYIEGK-NLSEVLRNLSWERRRKIAIGIAKALRFLH  797 (968)
T ss_pred             EEEEEc------------------------------CCCCEEEEeCCCCC-cHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Confidence            999543                              45689999999988 9999988 899999999999999999999


Q ss_pred             ---HhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-CEEEEecCCCCCCCCCCCC
Q 013230          288 ---AAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-DIFFLDLSQDPELFSGPKG  363 (447)
Q Consensus       288 ---~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-g~i~~~~~~~pelf~g~~~  363 (447)
                         + .+|+||||||+|||++.+.                    ..++. ||.+...... .+.....|++||.+.+...
T Consensus       798 ~~~~-~~iiH~dlkp~Nil~~~~~--------------------~~~~~-~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~  855 (968)
T PLN00113        798 CRCS-PAVVVGNLSPEKIIIDGKD--------------------EPHLR-LSLPGLLCTDTKCFISSAYVAPETRETKDI  855 (968)
T ss_pred             cCCC-CCeecCCCCHHhEEECCCC--------------------ceEEE-eccccccccCCCccccccccCcccccCCCC
Confidence               5 7999999999999999876                    45543 5554432211 2233345899999998878


Q ss_pred             CchHHHHHhhccCCcccccCCCCCChh--------HHHHHHHHH-----Hhhc---cCCCCCccchHHHHHHHHHhcccc
Q 013230          364 DKQFDTYRKMKKVTEDQWEGSFPKTNV--------LWLVYLVDM-----LLLK---KTFDRSSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       364 ~~~~di~s~lg~~~~~~~~~~~p~~~~--------~~~~~~~~~-----l~~~---~~~~~~~~~s~~l~dLl~~mL~~d  427 (447)
                      +.+.|||+ +|++.++++++..|+...        .|.++....     ....   ...+.......++.+++.+|++.|
T Consensus       856 ~~~sDv~S-~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~~  934 (968)
T PLN00113        856 TEKSDIYG-FGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTATD  934 (968)
T ss_pred             Ccccchhh-HHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCccchhheeCccccCCCCccHHHHHHHHHHHHhhCcCC
Confidence            88889999 999999999999886421        122211100     0000   011111233457889999999999


Q ss_pred             -----CHHHHHcC
Q 013230          428 -----SAKEAIFD  435 (447)
Q Consensus       428 -----sa~elL~H  435 (447)
                           |++|+++.
T Consensus       935 P~~RPt~~evl~~  947 (968)
T PLN00113        935 PTARPCANDVLKT  947 (968)
T ss_pred             chhCcCHHHHHHH
Confidence                 88888754

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.88  E-value=2.9e-22  Score=201.45  Aligned_cols=140  Identities=12%  Similarity=0.034  Sum_probs=107.3

Q ss_pred             CCcceEEeccccceEEEEece-------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccce
Q 013230          133 DPENIVKVGEGTFGEAFLAGN-------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~-------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~i  205 (447)
                      .|.+.+.||+|+||+||+|++       +|+|++.....   ........+.+.+|+.+|+.|+|        +|    +
T Consensus        19 ~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~---~~~~~~~~~~~~~E~~iL~~L~h--------~~----i   83 (365)
T PRK09188         19 RFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVP---WWSKPLARHLAAREIRALKTVRG--------IG----V   83 (365)
T ss_pred             CceEccEEeecCcEEEEEEEEcCCCCeEEEEEEeccccc---ccccHHHHHHHHHHHHHHHhccC--------CC----C
Confidence            359999999999999999963       68887642210   00112234568999999999998        77    6


Q ss_pred             e-eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhcCCHHHHHHHHHHHHHHHH
Q 013230          206 V-EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLA  284 (447)
Q Consensus       206 v-~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~l~~~~~~~i~~Qil~gL~  284 (447)
                      + .+++.                                  +..|+||||+.|| +|.......   ...++.|++.||.
T Consensus        84 v~~l~~~----------------------------------~~~~LVmE~~~G~-~L~~~~~~~---~~~~~~~i~~aL~  125 (365)
T PRK09188         84 VPQLLAT----------------------------------GKDGLVRGWTEGV-PLHLARPHG---DPAWFRSAHRALR  125 (365)
T ss_pred             CcEEEEc----------------------------------CCcEEEEEccCCC-CHHHhCccc---hHHHHHHHHHHHH
Confidence            6 44432                                  2479999999976 886432111   2578899999999


Q ss_pred             HHHHhCCeeeccC-CCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE
Q 013230          285 VAEAAYEFEHRDL-HWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI  346 (447)
Q Consensus       285 ylH~~~~iiHrDL-KpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~  346 (447)
                      |||+ .||+|||| ||+|||++.++                    .+||+|||+|+.....++
T Consensus       126 ~lH~-~gIiHrDL~KP~NILv~~~~--------------------~ikLiDFGlA~~~~~~~~  167 (365)
T PRK09188        126 DLHR-AGITHNDLAKPQNWLMGPDG--------------------EAAVIDFQLASVFRRRGA  167 (365)
T ss_pred             HHHH-CCCeeCCCCCcceEEEcCCC--------------------CEEEEECccceecccCcc
Confidence            9999 99999999 99999998776                    799999999998776654

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.88  E-value=3.7e-23  Score=192.78  Aligned_cols=221  Identities=21%  Similarity=0.273  Sum_probs=164.4

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |.+.+.||+|.||.+.+|++      +|+|.++..         +....++.+|...--.|.+.           .+|+.
T Consensus        26 y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p---------~tt~~dF~rEfhY~~~Ls~H-----------~hIi~   85 (378)
T KOG1345|consen   26 YTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRP---------QTTQADFVREFHYSFFLSPH-----------QHIID   85 (378)
T ss_pred             hhHHHHhcccceeeEEeeeccCCceEEEeeccCcc---------hhhHHHHHHHhccceeeccc-----------hhhhH
Confidence            38889999999999999984      899988843         34667899999988888773           33999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~  284 (447)
                      .|++.                             +.+.+.++++|||++.| ||..-+.   +.+...+.++.|+++|+.
T Consensus        86 tY~va-----------------------------Fqt~d~YvF~qE~aP~g-dL~snv~~~GigE~~~K~v~~ql~SAi~  135 (378)
T KOG1345|consen   86 TYEVA-----------------------------FQTSDAYVFVQEFAPRG-DLRSNVEAAGIGEANTKKVFAQLLSAIE  135 (378)
T ss_pred             HHHHH-----------------------------hhcCceEEEeeccCccc-hhhhhcCcccccHHHHHHHHHHHHHHHH
Confidence            88873                             33456688999999999 9998887   899999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC--EEEEecCCCCCCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED--IFFLDLSQDPELFSGPK  362 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g--~i~~~~~~~pelf~g~~  362 (447)
                      |+|+ .++||||||.+||||-..+.                  ..|||||||+++..+..-  .-++-.|.+||+...-.
T Consensus       136 fMHs-knlVHRdlK~eNiLif~~df------------------~rvKlcDFG~t~k~g~tV~~~~~~~~y~~pe~~~~~~  196 (378)
T KOG1345|consen  136 FMHS-KNLVHRDLKAENILIFDADF------------------YRVKLCDFGLTRKVGTTVKYLEYVNNYHAPELCDTVV  196 (378)
T ss_pred             Hhhc-cchhhcccccceEEEecCCc------------------cEEEeeecccccccCceehhhhhhcccCCcHHHhhcc
Confidence            9999 99999999999999977652                  289999999988754321  11222356676653221


Q ss_pred             C-----CchHHHHHhhccCCcccccCCCCCChh--------HHHHHHHHHHhhccCCCC-CccchHHHHHHHHHhcccc
Q 013230          363 G-----DKQFDTYRKMKKVTEDQWEGSFPKTNV--------LWLVYLVDMLLLKKTFDR-SSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       363 ~-----~~~~di~s~lg~~~~~~~~~~~p~~~~--------~~~~~~~~~l~~~~~~~~-~~~~s~~l~dLl~~mL~~d  427 (447)
                      .     ....|+|+ +|++.+..++|.+|+-..        .|.++.....   ...|. ....++.+..+.++-|..+
T Consensus       197 ne~~~~~ps~D~Wq-fGIi~f~cltG~~PWQka~~~d~~Y~~~~~w~~rk~---~~~P~~F~~fs~~a~r~Fkk~lt~~  271 (378)
T KOG1345|consen  197 NEKLVVNPSTDIWQ-FGIIFFYCLTGKFPWQKASIMDKPYWEWEQWLKRKN---PALPKKFNPFSEKALRLFKKSLTPR  271 (378)
T ss_pred             ccceEecccccchh-eeeeeeeeecCCCcchhhhccCchHHHHHHHhcccC---ccCchhhcccCHHHHHHHHHhcCCc
Confidence            1     12238999 999999999999887532        2333333222   12222 3346788888888888776

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.87  E-value=7.3e-23  Score=213.75  Aligned_cols=220  Identities=20%  Similarity=0.165  Sum_probs=177.8

Q ss_pred             CcceEEeccccceEEEEec----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccc
Q 013230          134 PENIVKVGEGTFGEAFLAG----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACT  203 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~  203 (447)
                      .+..++||.|+||+||+|.          .||+|++...       ...+...+++.|+.+|..|+|        ||   
T Consensus       698 lkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~-------t~~~~s~e~LdeAl~masldH--------pn---  759 (1177)
T KOG1025|consen  698 LKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEF-------TSPKASIELLDEALRMASLDH--------PN---  759 (1177)
T ss_pred             hhhhceeccccceeEEeeeEecCCceecceeEEEEeecc-------CCchhhHHHHHHHHHHhcCCC--------ch---
Confidence            4677999999999999996          3999987643       334556889999999999999        88   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHH
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQ  278 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Q  278 (447)
                       +++++++...                               +.+.||.+|+++| .|.++++     +.......+..|
T Consensus       760 -l~RLLgvc~~-------------------------------s~~qlvtq~mP~G-~LlDyvr~hr~~igsq~lLnw~~Q  806 (1177)
T KOG1025|consen  760 -LLRLLGVCML-------------------------------STLQLVTQLMPLG-CLLDYVREHRDNIGSQDLLNWCYQ  806 (1177)
T ss_pred             -HHHHhhhccc-------------------------------chHHHHHHhcccc-hHHHHHHHhhccccHHHHHHHHHH
Confidence             9999998432                               4488999999999 8888877     778889999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE-------EEec
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF-------FLDL  351 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i-------~~~~  351 (447)
                      |+.|+.|||+ +++|||||-..|+|+....                    ++||.|||+|+.....+--       +.--
T Consensus       807 IAkgM~YLe~-qrlVHrdLaaRNVLVksP~--------------------hvkitdfgla~ll~~d~~ey~~~~gK~pik  865 (1177)
T KOG1025|consen  807 IAKGMKYLEE-QRLVHRDLAARNVLVKSPN--------------------HVKITDFGLAKLLAPDEKEYSAPGGKVPIK  865 (1177)
T ss_pred             HHHHHHHHHh-cchhhhhhhhhheeecCCC--------------------eEEEEecchhhccCcccccccccccccCcH
Confidence            9999999999 9999999999999999987                    8999999999987665321       1122


Q ss_pred             CCCCCCCCCCCCCchHHHHHhhccCCcccccCC-CCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc
Q 013230          352 SQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGS-FPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       352 ~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~-~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d  427 (447)
                      +++-|.+.-..+..+.|+|+ .|+..++.++-. .|+.+. ..+.+.+.+....+++.|...+-+.--++.+|+..|
T Consensus       866 wmale~i~~~~~thqSDVWs-fGVtiWElmTFGa~Py~gi-~~~eI~dlle~geRLsqPpiCtiDVy~~mvkCwmid  940 (1177)
T KOG1025|consen  866 WMALESIRIRKYTHQSDVWS-FGVTIWELMTFGAKPYDGI-PAEEIPDLLEKGERLSQPPICTIDVYMVMVKCWMID  940 (1177)
T ss_pred             HHHHHHhhccCCCchhhhhh-hhhhHHHHHhcCCCccCCC-CHHHhhHHHhccccCCCCCCccHHHHHHHHHHhccC
Confidence            55666666667888999999 998887776654 566543 333445555445568888888999999999999998

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.87  E-value=9.6e-23  Score=202.46  Aligned_cols=182  Identities=19%  Similarity=0.237  Sum_probs=144.6

Q ss_pred             CCcceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          133 DPENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      ..++++.||+|.||.||+|.    .||||+++...           .+.+..|-.|.+... ++|     +|    |+++
T Consensus       211 pl~l~eli~~Grfg~V~KaqL~~~~VAVKifp~~~-----------kqs~~~Ek~Iy~lp~-m~h-----~n----Il~F  269 (534)
T KOG3653|consen  211 PLQLLELIGRGRFGCVWKAQLDNRLVAVKIFPEQE-----------KQSFQNEKNIYSLPG-MKH-----EN----ILQF  269 (534)
T ss_pred             chhhHHHhhcCccceeehhhccCceeEEEecCHHH-----------HHHHHhHHHHHhccC-ccc-----hh----HHHh
Confidence            34888999999999999997    49999988442           255788888877542 233     66    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLAV  285 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~y  285 (447)
                      +.+-. .|.                         ...-.++||++|.+.| +|.++++   .++.....++.-+++||+|
T Consensus       270 i~~ek-r~t-------------------------~~~~eywLVt~fh~kG-sL~dyL~~ntisw~~~cria~SmarGLa~  322 (534)
T KOG3653|consen  270 IGAEK-RGT-------------------------ADRMEYWLVTEFHPKG-SLCDYLKANTISWNSLCRIAESMARGLAH  322 (534)
T ss_pred             hchhc-cCC-------------------------ccccceeEEeeeccCC-cHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            88711 110                         0134689999999999 9999998   8999999999999999999


Q ss_pred             HHH--------hCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-------CEEEEe
Q 013230          286 AEA--------AYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-------DIFFLD  350 (447)
Q Consensus       286 lH~--------~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-------g~i~~~  350 (447)
                      ||+        ...|+|||||..||||..+.                    ..-|+|||||......       |-+.+-
T Consensus       323 LHee~p~~d~~Kp~IaHRDlkSkNVLvK~Dl--------------------TccIaDFGLAl~~~p~~~~~d~~~qVGT~  382 (534)
T KOG3653|consen  323 LHEELPRGDHHKPPIAHRDLKSKNVLVKNDL--------------------TCCIADFGLALRLEPGKPQGDTHGQVGTR  382 (534)
T ss_pred             hcccCCcCCCCCCccccccccccceEEccCC--------------------cEEeeccceeEEecCCCCCcchhhhhhhh
Confidence            996        34799999999999999997                    7999999999886543       446666


Q ss_pred             cCCCCCCCCCCCCCc------hHHHHHhhccCCcccccC
Q 013230          351 LSQDPELFSGPKGDK------QFDTYRKMKKVTEDQWEG  383 (447)
Q Consensus       351 ~~~~pelf~g~~~~~------~~di~s~lg~~~~~~~~~  383 (447)
                      -||+||+..|...-.      +.|+|+ ||-+..++.+.
T Consensus       383 RYMAPEvLEgainl~d~~Afkr~DvYa-mgLVLWEi~SR  420 (534)
T KOG3653|consen  383 RYMAPEVLEGAINLQDRDAFKRIDVYA-MGLVLWEIASR  420 (534)
T ss_pred             hhcCHHHHhhhcccccHHHHHHHHHHH-HHHHHHHHHhh
Confidence            799999998865443      349999 88887776544

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.86  E-value=8e-21  Score=173.41  Aligned_cols=192  Identities=29%  Similarity=0.443  Sum_probs=155.2

Q ss_pred             eccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEEE
Q 013230          140 VGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKV  213 (447)
Q Consensus       140 LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~~  213 (447)
                      ||+|.+|.||+|..      +++|++.....       ......+.+|+.+++.+.|        ++    |+++++++.
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~-------~~~~~~~~~e~~~~~~l~~--------~~----i~~~~~~~~   61 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDS-------SSLLEELLREIEILKKLNH--------PN----IVKLYGVFE   61 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccc-------hhHHHHHHHHHHHHHhcCC--------CC----eeeEeeeee
Confidence            68999999999973      88998774421       1034678999999999988        67    999999853


Q ss_pred             EeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHHHHHHHH
Q 013230          214 CQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAGLAVAEA  288 (447)
Q Consensus       214 ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~gL~ylH~  288 (447)
                      .                              ....+++||++.|+ +|.+++.     ++...++.++.|++.+|++||+
T Consensus        62 ~------------------------------~~~~~~~~e~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~  110 (215)
T cd00180          62 D------------------------------ENHLYLVMEYCEGG-SLKDLLKENEGKLSEDEILRILLQILEGLEYLHS  110 (215)
T ss_pred             c------------------------------CCeEEEEEecCCCC-cHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            2                              46799999999876 9999875     7889999999999999999999


Q ss_pred             hCCeeeccCCCCCEEEec-CCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCCCCCC-
Q 013230          289 AYEFEHRDLHWGNVLLSR-NDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPELFSGP-  361 (447)
Q Consensus       289 ~~~iiHrDLKpeNILl~~-~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pelf~g~-  361 (447)
                       .|++|+||+|.||+++. ++                    .++|+|||.+.......     ......|+.|+.+.+. 
T Consensus       111 -~~~~H~dl~~~ni~~~~~~~--------------------~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~  169 (215)
T cd00180         111 -NGIIHRDLKPENILLDSDNG--------------------KVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKG  169 (215)
T ss_pred             -CCeeccCCCHhhEEEeCCCC--------------------cEEEecCCceEEccCCcchhhcccCCCCccChhHhcccC
Confidence             99999999999999998 55                    79999999998765542     2334457788888775 


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHcCC
Q 013230          362 KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDP  436 (447)
Q Consensus       362 ~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HP  436 (447)
                      ......|+|+ +|.+..++                                 ..+.+++.+||..|     +++++++|+
T Consensus       170 ~~~~~~D~~~-lg~~~~~l---------------------------------~~~~~~l~~~l~~~p~~R~~~~~l~~~~  215 (215)
T cd00180         170 YYSEKSDIWS-LGVILYEL---------------------------------PELKDLIRKMLQKDPEKRPSAKEILEHL  215 (215)
T ss_pred             CCCchhhhHH-HHHHHHHH---------------------------------HHHHHHHHHHhhCCcccCcCHHHHhhCC
Confidence            4555669998 77655443                                 46899999999888     999999886

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.86  E-value=8e-21  Score=204.43  Aligned_cols=222  Identities=19%  Similarity=0.254  Sum_probs=175.7

Q ss_pred             cceEEeccccceEEEEec-------------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCc
Q 013230          135 ENIVKVGEGTFGEAFLAG-------------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA  201 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~-------------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~  201 (447)
                      ++.+.||+|.||.|++|.             .||+|..+..       ......+.+..|+.+|+.+.+  |     +| 
T Consensus       299 ~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~-------~~~~~~~~~~~El~~m~~~g~--H-----~n-  363 (609)
T KOG0200|consen  299 KLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKEN-------ASSSEKKDLMSELNVLKELGK--H-----PN-  363 (609)
T ss_pred             cccceeecccccceEeEEEeecccccccceEEEEEEecccc-------cCcHHHHHHHHHHHHHHHhcC--C-----cc-
Confidence            455699999999999995             2888877643       222445789999999999975  1     55 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------------
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------------  266 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------------  266 (447)
                         |+.++++...                              .+.+++|+|||..| +|..+++               
T Consensus       364 ---iv~llG~~t~------------------------------~~~~~~v~Ey~~~G-~L~~~Lr~~r~~~~~~~~~~~~  409 (609)
T KOG0200|consen  364 ---IVNLLGACTQ------------------------------DGPLYVIVEYAEHG-DLLEFLRKKRVTESIDGSGVFP  409 (609)
T ss_pred             ---hhhheeeecc------------------------------CCceEEEEEeccCC-cHHHHHHhccccccccccCCCc
Confidence               9999998432                              45699999999999 8888864               


Q ss_pred             -----CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeec
Q 013230          267 -----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRIN  341 (447)
Q Consensus       267 -----l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~  341 (447)
                           ++......++.||+.|++||++ ..+|||||-..|||+..+.                    .+||+|||+||..
T Consensus       410 ~~~~~L~~~dLlsfa~QIa~GMe~L~~-~~~vHRDLAaRNVLi~~~~--------------------~~kIaDFGlar~~  468 (609)
T KOG0200|consen  410 NERDALTTKDLLSFAYQIANGMEYLAS-VPCVHRDLAARNVLITKNK--------------------VIKIADFGLARDH  468 (609)
T ss_pred             cccCCcCHHHHHHHHHHHHHHHHHHhh-CCccchhhhhhhEEecCCC--------------------EEEEccccceecc
Confidence                 4567889999999999999999 9999999999999999997                    7999999999965


Q ss_pred             CCCCEE--------EEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCC-CCCChhHHHHHHHHHHhhccCCCCCccc
Q 013230          342 TGEDIF--------FLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGS-FPKTNVLWLVYLVDMLLLKKTFDRSSKD  412 (447)
Q Consensus       342 ~~~g~i--------~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~-~p~~~~~~~~~~~~~l~~~~~~~~~~~~  412 (447)
                      ...+..        +---+|+||-+.......+.|+|+ .|+.++++.+.. .|+.+......+.+.+........|...
T Consensus       469 ~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWS-fGI~L~EifsLG~~PYp~~~~~~~l~~~l~~G~r~~~P~~c  547 (609)
T KOG0200|consen  469 YNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWS-FGILLWEIFTLGGTPYPGIPPTEELLEFLKEGNRMEQPEHC  547 (609)
T ss_pred             CCCCceEecCCCCccceeecCHHHhccCcccccchhhH-HHHHHHHHhhCCCCCCCCCCcHHHHHHHHhcCCCCCCCCCC
Confidence            444221        112289999998888888889999 999988887665 6776643233334455545566777888


Q ss_pred             hHHHHHHHHHhcccc
Q 013230          413 ERDLRSLKKRLDKYN  427 (447)
Q Consensus       413 s~~l~dLl~~mL~~d  427 (447)
                      +++.-++++.|...+
T Consensus       548 ~~eiY~iM~~CW~~~  562 (609)
T KOG0200|consen  548 SDEIYDLMKSCWNAD  562 (609)
T ss_pred             CHHHHHHHHHHhCCC
Confidence            999999999999777

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.85  E-value=3.5e-20  Score=172.59  Aligned_cols=195  Identities=27%  Similarity=0.372  Sum_probs=156.2

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |.+.+.||.|+||.||+|..      +|+|.+.....       ......+.+|+..++.++|        +|    +++
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-------~~~~~~~~~e~~~~~~~~~--------~~----i~~   61 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKT-------EKQREEFLREIRILKKLKH--------PN----IVK   61 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccc-------hHHHHHHHHHHHHHHhCCC--------CC----hhh
Confidence            46789999999999999963      89998875422       1245678899999999987        77    899


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++.+..                              ....++++|++.+| +|.+++.     +++..+..++.|++.+
T Consensus        62 ~~~~~~~------------------------------~~~~~~v~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~l~~~  110 (225)
T smart00221       62 LYGVFED------------------------------PEPLYLVMEYCEGG-DLFDYLRKKGGKLSEEEARFYLRQILEA  110 (225)
T ss_pred             heeeeec------------------------------CCceEEEEeccCCC-CHHHHHHhcccCCCHHHHHHHHHHHHHH
Confidence            9888432                              46699999999977 9998875     6888899999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------EEEEecCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------IFFLDLSQDPE  356 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------~i~~~~~~~pe  356 (447)
                      |.+||+ ++++|+||+|.||+++.++                    .++|+|||++.......      ......+++|+
T Consensus       111 l~~lh~-~~i~h~di~~~ni~v~~~~--------------------~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~~pe  169 (225)
T smart00221      111 LEYLHS-LGIVHRDLKPENILLGMDG--------------------LVKLADFGLARFIHRDLAALLKTVKGTPFYLAPE  169 (225)
T ss_pred             HHHHHh-CCeecCCCCHHHEEEcCCC--------------------CEEEeeCceeeEecCcccccccceeccCCcCCHh
Confidence            999999 9999999999999999986                    79999999998875532      23344588999


Q ss_pred             CC-CCCCCCchHHHHHhhccCCcccccCCCCCCh-hHHHHHHHHHH
Q 013230          357 LF-SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTN-VLWLVYLVDML  400 (447)
Q Consensus       357 lf-~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~-~~~~~~~~~~l  400 (447)
                      .+ .+.......|+|+ +|.+..+++.+..|+.. ......+.+.+
T Consensus       170 ~~~~~~~~~~~~Dv~~-lG~~~~~l~~g~~pf~~~~~~~~~~~~~~  214 (225)
T smart00221      170 VLLGGKGYGEAVDIWS-LGVILYELLWGPEPFSGEGEFTSLLSDVW  214 (225)
T ss_pred             HhcCCCCCCchhhHHH-HHHHHHHHHHCCCCccccchhHHHHHHHH
Confidence            88 5555556679999 89999999999999976 34433333333

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.84  E-value=1.1e-20  Score=174.33  Aligned_cols=138  Identities=16%  Similarity=0.117  Sum_probs=99.0

Q ss_pred             eEEeccccceEEEEec-----eeEEEEEecCCCcccccc-----ccc-------------chHHHHHHHHHHHhcccccc
Q 013230          137 IVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGE-----AQK-------------KSEELLEEVVLSWTLNHLRR  193 (447)
Q Consensus       137 ~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~-----~~~-------------~~~~~~~Ei~il~~L~h~~~  193 (447)
                      ...||+|+||.||+|.     .||+|+++..........     ...             ......+|+.++..|.+   
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~---   78 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVT---   78 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHH---
Confidence            4689999999999997     399999876432100000     000             01233569999999986   


Q ss_pred             CCCCCCCc-ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhh-hc---CC
Q 013230          194 NEGDTLNA-CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESF-VL---LN  268 (447)
Q Consensus       194 ~~~~~~n~-~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~-i~---l~  268 (447)
                           ++. +|.++   ..                                  ...+|||||+.|+ ++... +.   ++
T Consensus        79 -----~~v~~p~~~---~~----------------------------------~~~~iVmE~i~g~-~l~~~~~~~~~~~  115 (190)
T cd05147          79 -----AGIPCPEPI---LL----------------------------------KSHVLVMEFIGDD-GWAAPRLKDAPLS  115 (190)
T ss_pred             -----CCCCCCcEE---Ee----------------------------------cCCEEEEEEeCCC-CCcchhhhcCCCC
Confidence                 441 12121   11                                  1238999999876 66543 22   88


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC
Q 013230          269 INEARSLLVQVTAGLAVA-EAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT  342 (447)
Q Consensus       269 ~~~~~~i~~Qil~gL~yl-H~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~  342 (447)
                      ...+..++.|++.+|.|+ |+ .||+||||||+|||++. +                    .++|+|||+|....
T Consensus       116 ~~~~~~i~~qi~~~L~~l~H~-~giiHrDlkP~NIli~~-~--------------------~v~LiDFG~a~~~~  168 (190)
T cd05147         116 ESKARELYLQVIQIMRILYQD-CRLVHADLSEYNLLYHD-G--------------------KLYIIDVSQSVEHD  168 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CCcccCCCCHHHEEEEC-C--------------------cEEEEEccccccCC
Confidence            999999999999999999 68 99999999999999984 4                    69999999987543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.83  E-value=2.3e-20  Score=184.44  Aligned_cols=176  Identities=19%  Similarity=0.229  Sum_probs=137.8

Q ss_pred             cceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHH--hccccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSW--TLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~--~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      .+++.||+|.||+||+|+    +||||++.....           ..+.+|.+|.+  .|+|        +|    |..+
T Consensus       214 ~L~e~IGkGRyGEVwrG~wrGe~VAVKiF~srdE-----------~SWfrEtEIYqTvmLRH--------EN----ILgF  270 (513)
T KOG2052|consen  214 VLQEIIGKGRFGEVWRGRWRGEDVAVKIFSSRDE-----------RSWFRETEIYQTVMLRH--------EN----ILGF  270 (513)
T ss_pred             EEEEEecCccccceeeccccCCceEEEEecccch-----------hhhhhHHHHHHHHHhcc--------ch----hhhh
Confidence            889999999999999987    699999874322           45788888876  4666        88    9998


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLAV  285 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~y  285 (447)
                      +..-..                          +--.-.++|+|.+|-+.| +|++|+.   ++......++..++.||+|
T Consensus       271 IaaD~~--------------------------~~gs~TQLwLvTdYHe~G-SL~DyL~r~tv~~~~ml~LalS~AsGLaH  323 (513)
T KOG2052|consen  271 IAADNK--------------------------DNGSWTQLWLVTDYHEHG-SLYDYLNRNTVTTEGMLKLALSIASGLAH  323 (513)
T ss_pred             hhcccc--------------------------CCCceEEEEEeeecccCC-cHHHHHhhccCCHHHHHHHHHHHhhhHHH
Confidence            877111                          011135699999999999 9999998   9999999999999999999


Q ss_pred             HHH-------hCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---------CEEEE
Q 013230          286 AEA-------AYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---------DIFFL  349 (447)
Q Consensus       286 lH~-------~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---------g~i~~  349 (447)
                      ||-       ...|.|||||..|||+.+++                    ..-|+|+|||......         .-+..
T Consensus       324 LH~eI~GTqgKPaIAHRDlKSKNILVKkn~--------------------~C~IADLGLAv~h~~~t~~idi~~N~rVGT  383 (513)
T KOG2052|consen  324 LHMEIVGTQGKPAIAHRDLKSKNILVKKNG--------------------TCCIADLGLAVRHDSDTDTIDIPPNPRVGT  383 (513)
T ss_pred             HHHHHhcCCCCchhhccccccccEEEccCC--------------------cEEEeeceeeEEecccCCcccCCCCCccce
Confidence            994       24799999999999999998                    7999999999764333         23556


Q ss_pred             ecCCCCCCCCCCCCC-----chH-HHHHhhccCCcccc
Q 013230          350 DLSQDPELFSGPKGD-----KQF-DTYRKMKKVTEDQW  381 (447)
Q Consensus       350 ~~~~~pelf~g~~~~-----~~~-di~s~lg~~~~~~~  381 (447)
                      --||+||+....-..     .+. |||+ +|.+.++..
T Consensus       384 KRYMAPEvLdetin~~~Fesyk~ADIYa-fgLVlWEia  420 (513)
T KOG2052|consen  384 KRYMAPEVLDETINMKHFESYKRADIYA-FGLVLWEIA  420 (513)
T ss_pred             eeccChHHhhhhcChhhhhhhhHHHHHH-HHHHHHHHH
Confidence            669999998654322     222 8999 887765543

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.82  E-value=1.7e-19  Score=166.39  Aligned_cols=142  Identities=15%  Similarity=0.011  Sum_probs=101.3

Q ss_pred             eEEeccccceEEEEec-----eeEEEEEecCCCccccc-----------------cc-ccchHHHHHHHHHHHhcccccc
Q 013230          137 IVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNG-----------------EA-QKKSEELLEEVVLSWTLNHLRR  193 (447)
Q Consensus       137 ~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~-----------------~~-~~~~~~~~~Ei~il~~L~h~~~  193 (447)
                      .+.||+|+||+||+|+     .||+|+++.........                 .. ........+|...+.++.+   
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~---   78 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYE---   78 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHh---
Confidence            4789999999999997     39999988653210000                 00 0001234578999999987   


Q ss_pred             CCCCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHH
Q 013230          194 NEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNIN  270 (447)
Q Consensus       194 ~~~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~  270 (447)
                           ++    +.....+..                                ...|+||||+.|+..+...+.   ++..
T Consensus        79 -----~~----i~~p~~~~~--------------------------------~~~~lVmE~~~g~~~~~~~l~~~~~~~~  117 (190)
T cd05145          79 -----AG----VPVPEPILL--------------------------------KKNVLVMEFIGDDGSPAPRLKDVPLEEE  117 (190)
T ss_pred             -----CC----CCCceEEEe--------------------------------cCCEEEEEEecCCCchhhhhhhccCCHH
Confidence                 55    322222211                                124899999987622222232   7888


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCC
Q 013230          271 EARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG  343 (447)
Q Consensus       271 ~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~  343 (447)
                      .+..++.|++.+|.++|+..||+||||||+|||++ ++                    .++|+|||+|+....
T Consensus       118 ~~~~i~~~l~~~l~~lH~~~givHrDlkP~NIll~-~~--------------------~~~liDFG~a~~~~~  169 (190)
T cd05145         118 EAEELYEQVVEQMRRLYQEAGLVHGDLSEYNILYH-DG--------------------KPYIIDVSQAVELDH  169 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEecCCCChhhEEEE-CC--------------------CEEEEEcccceecCC
Confidence            99999999999999999778999999999999998 55                    799999999887544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.81  E-value=3.3e-20  Score=206.23  Aligned_cols=186  Identities=10%  Similarity=0.003  Sum_probs=131.6

Q ss_pred             CceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCC-ccccccccCc
Q 013230          246 NQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDS-VTMNFLLDGK  319 (447)
Q Consensus       246 ~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~-~~~~~~~~~~  319 (447)
                      ..++.+||++. + +|.+++.     +++.+++.++.||+.||+|||+ +||+||||||+||||+..+. ...+|.....
T Consensus        53 ~~~~~~~e~~~-~-~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~-~gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~  129 (793)
T PLN00181         53 DSIVRALECED-V-SLRQWLDNPDRSVDAFECFHVFRQIVEIVNAAHS-QGIVVHNVRPSCFVMSSFNHVSFIESASCSD  129 (793)
T ss_pred             chhhhhhccCC-c-cHHHHHhcccccccHHHHHHHHHHHHHHHHHHHh-CCeeeccCCchhEEEcccCcEEEeeccccCc
Confidence            45788889874 4 9999985     8999999999999999999999 99999999999999976543 2333332211


Q ss_pred             ccccccCCCcEEEeeccceeecCCC------------C---------EEEEecCCCCCCCCCCCCCchHHHHHhhccCCc
Q 013230          320 QMFVRTFGLSVTIIDFTLSRINTGE------------D---------IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTE  378 (447)
Q Consensus       320 ~~~~~~~~~~vkL~DFGla~~~~~~------------g---------~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~  378 (447)
                      .  .......+||+|||+++.....            +         .+....|++||++.+..+....|||+ +|++.+
T Consensus       130 ~--~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwS-lGviL~  206 (793)
T PLN00181        130 S--GSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYR-LGVLLF  206 (793)
T ss_pred             c--cccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcceEChhhhccCCCCchhhhhh-HHHHHH
Confidence            1  0111236899999999753210            0         01123389999998888888889999 999999


Q ss_pred             ccccCCCCCChhHH-HHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCC
Q 013230          379 DQWEGSFPKTNVLW-LVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       379 ~~~~~~~p~~~~~~-~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~  441 (447)
                      +++.+..|+..... ...+....    ..+......++..+++.+||..|     |+.|+|+||||...
T Consensus       207 ELl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~L~~~P~~Rps~~eil~h~~~~~~  271 (793)
T PLN00181        207 ELFCPVSSREEKSRTMSSLRHRV----LPPQILLNWPKEASFCLWLLHPEPSCRPSMSELLQSEFINEP  271 (793)
T ss_pred             HHhhCCCchhhHHHHHHHHHHhh----cChhhhhcCHHHHHHHHHhCCCChhhCcChHHHhhchhhhhh
Confidence            99988777653211 11111111    11111123456789999999999     99999999999764

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.80  E-value=2.9e-19  Score=171.09  Aligned_cols=175  Identities=21%  Similarity=0.296  Sum_probs=139.0

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|++.++||+|+||+.|.|++      ||||.-+.+..          +-++.-|.+..+.|.+           |++|.
T Consensus        29 hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~----------APQLrdEYr~YKlL~g-----------~~GIP   87 (449)
T KOG1165|consen   29 HYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSE----------APQLRDEYRTYKLLGG-----------TEGIP   87 (449)
T ss_pred             cceeccccccCcceeeecccccccCceEEEEeccccCC----------cchHHHHHHHHHHHcC-----------CCCCC
Confidence            369999999999999999984      99998775532          2456789999998876           55577


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      .+|-+--|                              .-.-.+|||++  |.+|+++..     |+...+..++.|++.
T Consensus        88 ~vYYFGqe------------------------------G~~NiLVidLL--GPSLEDLFD~CgR~FSvKTV~miA~Qmi~  135 (449)
T KOG1165|consen   88 QVYYFGQE------------------------------GKYNILVIDLL--GPSLEDLFDLCGRRFSVKTVAMIAKQMIT  135 (449)
T ss_pred             ceeeeccc------------------------------cchhhhhhhhh--CcCHHHHHHHhcCcccHHhHHHHHHHHHH
Confidence            77654111                              23356888877  578888876     999999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----------------
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----------------  344 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----------------  344 (447)
                      -++|+|+ +.+|.|||||+|.||...+....+               .|.|+|||+|+.+.++                 
T Consensus       136 rie~vH~-k~LIYRDIKPdNFLIGrp~~k~~n---------------~IhiiDFGmAK~YrDp~TkqHIPYrE~KSLsGT  199 (449)
T KOG1165|consen  136 RIEYVHE-KDLIYRDIKPDNFLIGRPGTKDAN---------------VIHIIDFGMAKEYRDPKTKQHIPYREHKSLSGT  199 (449)
T ss_pred             HHHHHHh-cceeecccCccceeecCCCCCCCc---------------eEEEEeccchhhhcCccccccCccccccccccc
Confidence            9999999 999999999999999987642222               6899999999987654                 


Q ss_pred             -----------------------CEEEEecCCCCCCCCCCCCCchHHHHHhhccC
Q 013230          345 -----------------------DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKV  376 (447)
Q Consensus       345 -----------------------g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~  376 (447)
                                             |.+|+-++.|.-+|+|-+......-|..+|..
T Consensus       200 ARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA~tnK~kYeKIGe~  254 (449)
T KOG1165|consen  200 ARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKADTNKEKYEKIGET  254 (449)
T ss_pred             eeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccccccCcchHHHHHHhccc
Confidence                                   67777778888888887777666777777753

>PRK10345 hypothetical protein; Provisional

Probab=99.80  E-value=3.6e-19  Score=166.43  Aligned_cols=141  Identities=14%  Similarity=0.101  Sum_probs=101.1

Q ss_pred             cceEEeccccceEEEEece---eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeE
Q 013230          135 ENIVKVGEGTFGEAFLAGN---TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEI  211 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~---vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~  211 (447)
                      .-.+.||+|+||.||.-..   .+||++....        ....+.+.+|+.+++.|.|.       ...||+|++++++
T Consensus         5 ~~~~~LG~G~~~~Vy~hp~~~~k~IKv~~~~~--------~~~~~~~~rEi~~l~~L~~~-------~~~h~nIvr~yg~   69 (210)
T PRK10345          5 SEQSPLGTGRHRKCYAHPEDAQRCIKIVYHRG--------DGGDKEIRRELKYYAHLSRR-------LIDWSGIPRYYGT   69 (210)
T ss_pred             CCcceecCCCceEEEECCCCcCeEEEEEeccc--------cchHHHHHHHHHHHHHhhcc-------CCCCcccceeeEE
Confidence            4458899999999997443   4566655321        12346789999999999651       1224559999999


Q ss_pred             EEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceE-EEEEE--ecCccchhhhhc---CCHHHHHHHHHHHHHHH-H
Q 013230          212 KVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRY-IVFVL--QHGGKDLESFVL---LNINEARSLLVQVTAGL-A  284 (447)
Q Consensus       212 ~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-ivmE~--~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL-~  284 (447)
                      +....                           ....++ +||||  +.+| +|.+++.   +++.  ..++.|++.++ +
T Consensus        70 ~et~~---------------------------g~g~v~~~I~e~~G~~~~-tL~~~l~~~~~~e~--~~~~~~~L~~l~~  119 (210)
T PRK10345         70 VETDC---------------------------GTGYVYDVIADFDGKPSI-TLTEFAEQCRYEED--VAQLRQLLKKLKR  119 (210)
T ss_pred             EEeCC---------------------------CCeEEEEEEecCCCCcch-hHHHHHHcccccHh--HHHHHHHHHHHHH
Confidence            65411                           012334 78999  4456 9999987   5555  46688888888 9


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccc
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTL  337 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGl  337 (447)
                      |||+ ++|+||||||+|||++..+.                .+..++|+||+-
T Consensus       120 yLh~-~~IvhrDlKp~NILl~~~~~----------------~~~~~~LiDg~G  155 (210)
T PRK10345        120 YLLD-NRIVTMELKPQNILCQRISE----------------SEVIPVVCDNIG  155 (210)
T ss_pred             HHHH-CCEeecCCCHHHEEEeccCC----------------CCCcEEEEECCC
Confidence            9999 99999999999999986431                012699999553

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=2.1e-20  Score=199.49  Aligned_cols=239  Identities=21%  Similarity=0.201  Sum_probs=169.3

Q ss_pred             cceEEeccccceEEEEece------eEEEEEecCCCccccccc-ccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          135 ENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEA-QKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~-~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      .....+|.|+||.|+.+..      .+.|..+.. ..  .... ......+..|..+-..|.|        +|.++++..
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~-~~--~~~s~~~~~~~i~sE~~i~~~l~h--------~~~~e~l~~  389 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVR-VK--PTESERKYNYNITSEFCIGSSLSH--------PNIIETLDI  389 (601)
T ss_pred             CccceeeecccCceEEEEecCCCccchhhhhhcc-cC--CcccHHHHhhhhhhheeecccccC--------CchhhhHHH
Confidence            4568899999997777753      333332211 00  1111 1222236778888888888        884333333


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++.                                  ...+-+||||+ + ||..++.    ++..++..+++|++.||
T Consensus       390 ~~~~----------------------------------~~~~~~mE~~~-~-Dlf~~~~~~~~~~~~e~~c~fKqL~~Gv  433 (601)
T KOG0590|consen  390 VQEI----------------------------------DGILQSMEYCP-Y-DLFSLVMSNGKLTPLEADCFFKQLLRGV  433 (601)
T ss_pred             Hhhc----------------------------------ccchhhhhccc-H-HHHHHHhcccccchhhhhHHHHHHHHHH
Confidence            3332                                  12233399998 4 9998876    88999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---------CEEEEecCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---------DIFFLDLSQD  354 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---------g~i~~~~~~~  354 (447)
                      +|+|+ .||.||||||+|+|+..++                    .+||+|||.+....-+         |.+...-|.+
T Consensus       434 ~y~h~-~GiahrdlK~enll~~~~g--------------------~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~a  492 (601)
T KOG0590|consen  434 KYLHS-MGLAHRDLKLENLLVTENG--------------------ILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLA  492 (601)
T ss_pred             HHHHh-cCceeccCccccEEEecCC--------------------ceEEeecCcceeeccCcchhhhhhcCcccCCcCcC
Confidence            99999 9999999999999999998                    7999999998764332         5566677999


Q ss_pred             CCCCCCCCCCchH-HHHHhhccCCcccccCCCCCChhHHH--HHHH-HHHhhc----cCCCCCccchHHHHHHHHHhccc
Q 013230          355 PELFSGPKGDKQF-DTYRKMKKVTEDQWEGSFPKTNVLWL--VYLV-DMLLLK----KTFDRSSKDERDLRSLKKRLDKY  426 (447)
Q Consensus       355 pelf~g~~~~~~~-di~s~lg~~~~~~~~~~~p~~~~~~~--~~~~-~~l~~~----~~~~~~~~~s~~l~dLl~~mL~~  426 (447)
                      ||.+.+..++..+ |||+ .|++...|..+.+|+....-.  .+.. ......    ...+....++.+.+.+|.+||+.
T Consensus       493 pE~~~~~~ydpr~vDiwS-~~ii~~~m~~~~~~Wk~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~  571 (601)
T KOG0590|consen  493 PEVLTGKEYDPRAVDVWS-CGIIYICMILGRFPWKVAKKSDNSFKTNNYSDQRNIFEGPNRLLSLLPRETRIIIYRMLQL  571 (601)
T ss_pred             cccccccccCcchhhhhh-ccceEEEEecCCCccccccccccchhhhccccccccccChHHHHHhchhhHHHHHHHHccC
Confidence            9999999999888 9999 888888888777776432111  0000 000000    11111235678899999999999


Q ss_pred             c-----CHHHHHcCCCCCCCC
Q 013230          427 N-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       427 d-----sa~elL~HPff~~~~  442 (447)
                      |     |++++++.+||+.+.
T Consensus       572 ~P~~R~ti~~i~~d~W~~~i~  592 (601)
T KOG0590|consen  572 DPTKRITIEQILNDEWIRSIE  592 (601)
T ss_pred             ChhheecHHHHhhChHhhhcc
Confidence            9     999999999999874

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.78  E-value=3.9e-20  Score=190.26  Aligned_cols=226  Identities=19%  Similarity=0.251  Sum_probs=179.2

Q ss_pred             eccccceEEEEece---------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeee
Q 013230          140 VGEGTFGEAFLAGN---------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       140 LG~G~fG~V~~a~~---------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      +|+|+||.|++++.         +|+|+..+...  ..+..    .....|..++..++.           +|.+|++.-
T Consensus         2 lg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~--~~~~~----~~t~~er~il~~~~~-----------~~f~v~lhy   64 (612)
T KOG0603|consen    2 LGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATL--KVRDR----THTKQERIILAFVHN-----------TPFLVKLHY   64 (612)
T ss_pred             CCcCCCcchHHHHHhccccccchhhhhccccccc--ccccc----cccccHHHHHhhccC-----------CCceeeeee
Confidence            79999999999873         88888766543  11111    144667777777763           344899887


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHH
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVA  286 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~yl  286 (447)
                      .                              ++++..+|+++++..|| +|..-+.    +++...+.+...++.|++++
T Consensus        65 a------------------------------fqt~~kl~l~ld~~rgg-~lft~l~~~~~f~~~~~~~~~aelaLald~l  113 (612)
T KOG0603|consen   65 A------------------------------FQTDGKLYLILDFLRGG-DLFTRLSKEVMFDELDVAFYLAELALALDHL  113 (612)
T ss_pred             e------------------------------eccccchhHhhhhcccc-hhhhccccCCchHHHHHHHHHHHHHHHHhhc
Confidence            7                              44578899999999988 6665544    88999999999999999999


Q ss_pred             HHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--CEEEEecCCCCCCCCCCCCC
Q 013230          287 EAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--DIFFLDLSQDPELFSGPKGD  364 (447)
Q Consensus       287 H~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--g~i~~~~~~~pelf~g~~~~  364 (447)
                      |+ .+|+|||+|++||+++.+|                    ++++.|||+++.....  +| ..-.||+||++.|  ..
T Consensus       114 h~-l~iiyrd~k~enilld~~G--------------------hi~~tdfglske~v~~~~~c-gt~eymApEI~~g--h~  169 (612)
T KOG0603|consen  114 HK-LGIAYRDYKLENVLLLLEG--------------------HIKLTDFGLSKEAVKEKIAC-GTYEYRAPEIING--HL  169 (612)
T ss_pred             ch-hHHHHhcccccceeecccC--------------------ccccCCchhhhHhHhhhhcc-cchhhhhhHhhhc--cC
Confidence            99 9999999999999999998                    8999999999876443  22 3445899999984  34


Q ss_pred             chHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----------CHHHHHc
Q 013230          365 KQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----------SAKEAIF  434 (447)
Q Consensus       365 ~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----------sa~elL~  434 (447)
                      ...|.|+ +|....++.+|..|+...    ....++  +..+..+...+.++++++..|+..+          -+.|+++
T Consensus       170 ~a~D~ws-~gvl~felltg~~pf~~~----~~~~Il--~~~~~~p~~l~~~a~~~~~~l~~r~p~nrLg~~~~~~~eik~  242 (612)
T KOG0603|consen  170 SAADWWS-FGVLAFELLTGTLPFGGD----TMKRIL--KAELEMPRELSAEARSLFRQLFKRNPENRLGAGPDGVDEIKQ  242 (612)
T ss_pred             Ccccchh-hhhhHHHHhhCCCCCchH----HHHHHh--hhccCCchhhhHHHHHHHHHHHhhCHHHHhccCcchhHHHhc
Confidence            4459998 999999999999999772    223333  3456667889999999999999999          6889999


Q ss_pred             CCCCCCCCCC
Q 013230          435 DPFFSDLIVD  444 (447)
Q Consensus       435 HPff~~~~~~  444 (447)
                      |+||+.+.+.
T Consensus       243 h~f~~~i~~~  252 (612)
T KOG0603|consen  243 HEFFQSIDWN  252 (612)
T ss_pred             cchheeeeHh
Confidence            9999977543

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.77  E-value=1.6e-17  Score=160.18  Aligned_cols=238  Identities=24%  Similarity=0.324  Sum_probs=172.4

Q ss_pred             CcceEEeccccceEEEEece---eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCC-Ccccceeeee
Q 013230          134 PENIVKVGEGTFGEAFLAGN---TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTL-NACTTFVEMF  209 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~---vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~-n~~~~iv~l~  209 (447)
                      |...+.||.|+||.||++.+   +|+|.+.....     ........+.+|+.++..+.|        + +    +++++
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~~~~~~k~~~~~~~-----~~~~~~~~~~~e~~~~~~~~~--------~~~----i~~~~   64 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDRKLVALKVLAKKLE-----SKSKEVERFLREIQILASLNH--------PPN----IVKLY   64 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEeccEEEEEeechhhc-----cchhHHHHHHHHHHHHHHccC--------Ccc----eeeEE
Confidence            47889999999999999985   68888875532     111245778999999999987        4 5    99999


Q ss_pred             eEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------CCHHHHHHHHHHHHHH
Q 013230          210 EIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------LNINEARSLLVQVTAG  282 (447)
Q Consensus       210 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------l~~~~~~~i~~Qil~g  282 (447)
                      +.+..                              ....+++++++.+| ++.+++.       ++...+..++.|++.+
T Consensus        65 ~~~~~------------------------------~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (384)
T COG0515          65 DFFQD------------------------------EGSLYLVMEYVDGG-SLEDLLKKIGRKGPLSESEALFILAQILSA  113 (384)
T ss_pred             EEEec------------------------------CCEEEEEEecCCCC-cHHHHHHhcccccCCCHHHHHHHHHHHHHH
Confidence            98633                              33489999999987 7776654       6788999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----------CEEEEec
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----------DIFFLDL  351 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----------g~i~~~~  351 (447)
                      +.|+|+ .+++|||+||+|||++..+.                   .++++|||+++.....           ..+....
T Consensus       114 l~~~H~-~~~~hrd~kp~nil~~~~~~-------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~  173 (384)
T COG0515         114 LEYLHS-KGIIHRDIKPENILLDRDGR-------------------VVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPG  173 (384)
T ss_pred             HHHHHh-CCeeccCCCHHHeeecCCCC-------------------eEEEeccCcceecCCCCccccccccccccccccc
Confidence            999999 99999999999999999862                   5999999999855432           2234455


Q ss_pred             CCCCCCCCC---CCCCchHHHHHhhccCCcccccCCCCCChhHH---HHHHHHHHhhcc-C-CCCCccc------hHHHH
Q 013230          352 SQDPELFSG---PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLW---LVYLVDMLLLKK-T-FDRSSKD------ERDLR  417 (447)
Q Consensus       352 ~~~pelf~g---~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~---~~~~~~~l~~~~-~-~~~~~~~------s~~l~  417 (447)
                      |++|+.+.+   .......|+|+ +|...+....+..|+.....   .......+.... . .......      ...+.
T Consensus       174 ~~~pe~~~~~~~~~~~~~~D~~s-~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (384)
T COG0515         174 YMAPEVLLGLSLAYASSSSDIWS-LGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLASPLSPSNPELISKAAS  252 (384)
T ss_pred             cCCHHHhcCCCCCCCCchHhHHH-HHHHHHHHHhCCCCCCCCCccccHHHHHHHHHhcCCcccccccCccccchhhHHHH
Confidence            889998887   34555669997 88777777777777543321   111222221111 1 1111111      25899


Q ss_pred             HHHHHhcccc-----CHHHHHcCCCCCC
Q 013230          418 SLKKRLDKYN-----SAKEAIFDPFFSD  440 (447)
Q Consensus       418 dLl~~mL~~d-----sa~elL~HPff~~  440 (447)
                      +++.+++..+     ++.+...++|...
T Consensus       253 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~  280 (384)
T COG0515         253 DLLKKLLAKDPKNRLSSSSDLSHDLLAH  280 (384)
T ss_pred             HHHHHHHhcCchhcCCHHHHhhchHhhC
Confidence            9999999998     6776666665543

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.77  E-value=4.7e-18  Score=156.52  Aligned_cols=140  Identities=21%  Similarity=0.275  Sum_probs=110.9

Q ss_pred             CCcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|.++++||+|+||.+|+|.      .||+|+-..+.          ...++..|..+.+.|++           +.+|.
T Consensus        16 ky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a----------~hpqL~yEskvY~iL~~-----------g~GiP   74 (341)
T KOG1163|consen   16 KYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKA----------KHPQLLYESKVYRILQG-----------GVGIP   74 (341)
T ss_pred             ceEEEEeecCCchhheeeeeeccCCceEEEEeecccC----------CCcchhHHHHHHHHhcc-----------CCCCc
Confidence            45999999999999999997      49999755321          22457899999999987           23355


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      .++.++                              .....-.+||++.  |.+|+++..     |+...+..++-|++.
T Consensus        75 ~i~~y~------------------------------~e~~ynvlVMdLL--GPsLEdLfnfC~R~ftmkTvLMLaDQml~  122 (341)
T KOG1163|consen   75 HIRHYG------------------------------TEKDYNVLVMDLL--GPSLEDLFNFCSRRFTMKTVLMLADQMLS  122 (341)
T ss_pred             hhhhhc------------------------------cccccceeeeecc--CccHHHHHHHHhhhhhHHhHHHHHHHHHH
Confidence            555442                              1245568999987  579999877     899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG  343 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~  343 (447)
                      -++|+|. .++|||||||+|.|+.-+..                 --.+-|+|||+|+...+
T Consensus       123 RiEyvH~-r~fiHRDIKPdNFLMGlgrh-----------------~~kl~LIDFGLaKky~d  166 (341)
T KOG1163|consen  123 RIEYVHL-RNFIHRDIKPDNFLMGLGRH-----------------CNKLYLIDFGLAKKYRD  166 (341)
T ss_pred             HHHHHHh-hccccccCCccceeeccccc-----------------cceEEEEeccchhhhcc
Confidence            9999999 99999999999999976531                 11689999999987544

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.76  E-value=6.6e-18  Score=156.20  Aligned_cols=136  Identities=18%  Similarity=0.081  Sum_probs=99.6

Q ss_pred             cceEEeccccceEEEEeceeEEEEEecCCCcccccccccc-----hHHHHHHHHHHHhccccccCCCCCCCcccceeeee
Q 013230          135 ENIVKVGEGTFGEAFLAGNTVCKVVPIDGDLKVNGEAQKK-----SEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMF  209 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~vAiK~i~~~~~~~~~~~~~~~-----~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~  209 (447)
                      .+...||+|+||+||++..-..|.+..+-.     .....     ...+.+|+++|++|.|.       ++    +.+++
T Consensus         5 ~~~~~l~~~~f~~v~~~~~~~~k~~~~~l~-----~~~~~~~~~~~~l~~rE~~iL~~L~~~-------~~----vP~ll   68 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRGGERKFVRRDLS-----AAPWWLRGVAWWLARREALALRQLDGL-------PR----TPRLL   68 (218)
T ss_pred             ccceeecCCCcceEEEeecCCceeeecccc-----cchhhhhhHHHHHHHHHHHHHHhcCCC-------CC----CCEEE
Confidence            566889999999999887533333322211     11111     12478999999999762       33    67776


Q ss_pred             eEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhcCCHHHHHHHHHHHHHHHHHHHHh
Q 013230          210 EIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAA  289 (447)
Q Consensus       210 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~l~~~~~~~i~~Qil~gL~ylH~~  289 (447)
                      ++                                  +..|++|||+.|+ +|.+...  .. ...++.|++.+|.++|+ 
T Consensus        69 ~~----------------------------------~~~~lvmeyI~G~-~L~~~~~--~~-~~~~~~qi~~~L~~lH~-  109 (218)
T PRK12274         69 HW----------------------------------DGRHLDRSYLAGA-AMYQRPP--RG-DLAYFRAARRLLQQLHR-  109 (218)
T ss_pred             EE----------------------------------cCEEEEEeeecCc-cHHhhhh--hh-hHHHHHHHHHHHHHHHH-
Confidence            65                                  2369999999965 8876532  22 24578999999999999 


Q ss_pred             CCeeeccC-CCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC
Q 013230          290 YEFEHRDL-HWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED  345 (447)
Q Consensus       290 ~~iiHrDL-KpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g  345 (447)
                      +||+|||| ||+|||++.++                    .++|+|||+|......+
T Consensus       110 ~GIvHrDL~kp~NILv~~~g--------------------~i~LIDFG~A~~~~~~~  146 (218)
T PRK12274        110 CGVAHNDLAKEANWLVQEDG--------------------SPAVIDFQLAVRGNPRA  146 (218)
T ss_pred             CcCccCCCCCcceEEEcCCC--------------------CEEEEECCCceecCCcc
Confidence            99999999 79999998876                    79999999998655443

>smart00090 RIO RIO-like kinase

Probab=99.76  E-value=5.9e-18  Score=161.51  Aligned_cols=144  Identities=15%  Similarity=0.005  Sum_probs=103.7

Q ss_pred             CCcceEEeccccceEEEEec-------eeEEEEEecCCCccccc------cc----------ccchHHHHHHHHHHHhcc
Q 013230          133 DPENIVKVGEGTFGEAFLAG-------NTVCKVVPIDGDLKVNG------EA----------QKKSEELLEEVVLSWTLN  189 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-------~vAiK~i~~~~~~~~~~------~~----------~~~~~~~~~Ei~il~~L~  189 (447)
                      .|++.+.||+|+||.||+|.       .||+|+++.......+.      ..          +.....+.+|+.+++++.
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~  108 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLY  108 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46889999999999999997       29999987543110000      00          001123568999999997


Q ss_pred             ccccCCCCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---
Q 013230          190 HLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---  266 (447)
Q Consensus       190 h~~~~~~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---  266 (447)
                      +        ..  ..+.++++.                                  ...|+||||+.|+ +|..+..   
T Consensus       109 ~--------~~--i~~p~~~~~----------------------------------~~~~lV~E~~~g~-~L~~~~~~~~  143 (237)
T smart00090      109 E--------AG--VPVPKPIAW----------------------------------RRNVLVMEFIGGD-GLPAPRLKDV  143 (237)
T ss_pred             h--------cC--CCCCeeeEe----------------------------------cCceEEEEEecCC-cccccccccC
Confidence            5        21  112233322                                  1258999999865 7765542   


Q ss_pred             -CCHHHHHHHHHHHHHHHHHHHHhCC-eeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCC
Q 013230          267 -LNINEARSLLVQVTAGLAVAEAAYE-FEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG  343 (447)
Q Consensus       267 -l~~~~~~~i~~Qil~gL~ylH~~~~-iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~  343 (447)
                       +....++.++.||+.+|.+||+ .| |+||||||+|||++ ++                    .++|+|||+|+....
T Consensus       144 ~~~~~~~~~i~~qi~~~l~~LH~-~g~iiH~Dikp~NIli~-~~--------------------~i~LiDFg~a~~~~~  200 (237)
T smart00090      144 EPEEEEEFELYDDILEEMRKLYK-EGELVHGDLSEYNILVH-DG--------------------KVVIIDVSQSVELDH  200 (237)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHh-cCCEEeCCCChhhEEEE-CC--------------------CEEEEEChhhhccCC
Confidence             5566778999999999999999 99 99999999999999 54                    799999999876443

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.75  E-value=6.2e-18  Score=168.73  Aligned_cols=144  Identities=22%  Similarity=0.289  Sum_probs=111.0

Q ss_pred             CCcceEEeccccceEEEEece-------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccce
Q 013230          133 DPENIVKVGEGTFGEAFLAGN-------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~-------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~i  205 (447)
                      .|++.++||+|+||.||+|.+       +|+|+......       ... ..+..|+.++..+..        .+...+|
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~-------~~~-~~l~~E~~vl~~l~~--------~~~~~~~   82 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELG-------SKP-SVLKIEIQVLKKLEK--------KNGPSHF   82 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEeccc-------CCC-ccchhHHHHHHHHhh--------hcCCCCC
Confidence            349999999999999999983       77776654321       111 257889999999974        1112337


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQV  279 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qi  279 (447)
                      ..+++...                             ..+...||||+++  |.+|.++..      |+...+..++.|+
T Consensus        83 ~~~~~~G~-----------------------------~~~~~~~iVM~l~--G~sL~dl~~~~~~~~fs~~T~l~ia~q~  131 (322)
T KOG1164|consen   83 PKLLDHGR-----------------------------STEDFNFIVMSLL--GPSLEDLRKRNPPGRFSRKTVLRIAIQN  131 (322)
T ss_pred             CEEEEecc-----------------------------CCCceeEEEEecc--CccHHHHHHhCCCCCcCHhHHHHHHHHH
Confidence            88877731                             1245689999988  579999874      8999999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeecccee
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSR  339 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~  339 (447)
                      +.+|.+||+ .|++||||||+|+++.....               ..--.+.|+|||+|+
T Consensus       132 l~~l~~lH~-~G~iHRDiKp~N~~~g~~~~---------------~~~~~~~llDfGlar  175 (322)
T KOG1164|consen  132 LNALEDLHS-KGFIHRDIKPENFVVGQSSR---------------SEVRTLYLLDFGLAR  175 (322)
T ss_pred             HHHHHHHHh-cCcccCCcCHHHeeecCCCC---------------cccceEEEEecCCCc
Confidence            999999999 99999999999999987631               000169999999998

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.75  E-value=1.4e-17  Score=156.88  Aligned_cols=144  Identities=13%  Similarity=0.111  Sum_probs=108.8

Q ss_pred             CCcceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHH------HHHHHHHHHhccccccCCCCCCCcc
Q 013230          133 DPENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEE------LLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~------~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      .|+.++.||+|+||.||++.    ++|+|++.....     ..+.....      +.+|+..+.+|.|        ++  
T Consensus        32 ~y~~~~~l~~~~f~~v~l~~~~~~~~iiKvf~~~~~-----~~~~~~~~f~~g~~~e~Ea~~l~rL~~--------~G--   96 (232)
T PRK10359         32 NIKTIKVFRNIDDTKVSLIDTDYGKYILKVFAPKVK-----RTERFLKSFVKGDYYENLIVQTDRVRS--------EG--   96 (232)
T ss_pred             ceEEEEEecCCCceEEEEEecCCCcEEEEEechhcC-----chHHHHHhhhhhHHHHHHHHHHHHHHH--------CC--
Confidence            35999999999999999975    399998864422     12222222      5789999999988        77  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhcCCHHHHHHHHHHHHHH
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAG  282 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~l~~~~~~~i~~Qil~g  282 (447)
                        |....+++.......                      +.-....+|+|||++|. +|.++..+++.    .+.|++.+
T Consensus        97 --I~~~~d~~~~~~~~~----------------------~~~~~~~~lvmEyi~G~-tL~~~~~~~~~----~~~~i~~~  147 (232)
T PRK10359         97 --LASLNDFYLLAERKT----------------------LRYAHTYIMLIEYIEGV-ELNDMPEISED----VKAKIKAS  147 (232)
T ss_pred             --CCcceEeeeeccccc----------------------ccccCCeEEEEEEECCc-cHHHhhhccHH----HHHHHHHH
Confidence              788887765422100                      11135689999999964 99888655543    45699999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT  342 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~  342 (447)
                      |..+|+ .||+|||+||+|||++.++                     ++|+|||.++...
T Consensus       148 l~~lH~-~gi~H~Dikp~Nili~~~g---------------------i~liDfg~~~~~~  185 (232)
T PRK10359        148 IESLHQ-HGMVSGDPHKGNFIVSKNG---------------------LRIIDLSGKRCTA  185 (232)
T ss_pred             HHHHHH-cCCccCCCChHHEEEeCCC---------------------EEEEECCCccccc
Confidence            999999 9999999999999998763                     9999999887654

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.74  E-value=1.6e-17  Score=155.06  Aligned_cols=137  Identities=18%  Similarity=0.133  Sum_probs=101.6

Q ss_pred             EEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEEE
Q 013230          138 VKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKV  213 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~~  213 (447)
                      +.||+|++|.||+|+    .+++|+...................+.+|+.++..+.+        ++    +.....++.
T Consensus         2 ~~l~~G~~~~vy~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~--------~~----i~~p~~~~~   69 (211)
T PRK14879          2 KLIKRGAEAEIYLGDFLGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARK--------AG----VNVPAVYFV   69 (211)
T ss_pred             cccccCceEEEEEEeeCCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHH--------CC----CCCCeEEEE
Confidence            679999999999995    58888754321100000011122467889999999987        55    433333322


Q ss_pred             EeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-CCHHHHHHHHHHHHHHHHHHHHhCCe
Q 013230          214 CQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-LNINEARSLLVQVTAGLAVAEAAYEF  292 (447)
Q Consensus       214 ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-l~~~~~~~i~~Qil~gL~ylH~~~~i  292 (447)
                      .                              .+..+++|||++|+ +|.+++. ... ....++.|++.+|.++|+ .|+
T Consensus        70 ~------------------------------~~~~~lv~e~~~G~-~L~~~~~~~~~-~~~~i~~~i~~~l~~lH~-~~i  116 (211)
T PRK14879         70 D------------------------------PENFIIVMEYIEGE-PLKDLINSNGM-EELELSREIGRLVGKLHS-AGI  116 (211)
T ss_pred             e------------------------------CCCCEEEEEEeCCc-CHHHHHHhccH-HHHHHHHHHHHHHHHHHh-CCc
Confidence            2                              34579999999976 9998876 333 778899999999999999 999


Q ss_pred             eeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceee
Q 013230          293 EHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRI  340 (447)
Q Consensus       293 iHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~  340 (447)
                      +|||+||+|||++ ++                    .++|+|||+++.
T Consensus       117 ~H~Dl~p~Nil~~-~~--------------------~~~liDf~~a~~  143 (211)
T PRK14879        117 IHGDLTTSNMILS-GG--------------------KIYLIDFGLAEF  143 (211)
T ss_pred             ccCCCCcccEEEE-CC--------------------CEEEEECCcccC
Confidence            9999999999999 44                    699999999876

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.73  E-value=7.1e-18  Score=152.48  Aligned_cols=150  Identities=15%  Similarity=0.100  Sum_probs=115.4

Q ss_pred             chhhhhc-----CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEee
Q 013230          260 DLESFVL-----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIID  334 (447)
Q Consensus       260 ~L~~~i~-----l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~D  334 (447)
                      +|.+++.     +++.+++.++.||+.||+|||+ .+      ||+|||++.++                    .+|+  
T Consensus         2 sL~~~l~~~~~~l~~~~~~~i~~qi~~~L~~lH~-~~------kp~Nil~~~~~--------------------~~~~--   52 (176)
T smart00750        2 SLADILEVRGRPLNEEEIWAVCLQCLRALRELHR-QA------KSGNILLTWDG--------------------LLKL--   52 (176)
T ss_pred             cHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh-cC------CcccEeEcCcc--------------------ceee--
Confidence            6777765     8999999999999999999999 76      99999999887                    6888  


Q ss_pred             ccceeecCCCCEEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc-cCC-----CC
Q 013230          335 FTLSRINTGEDIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK-KTF-----DR  408 (447)
Q Consensus       335 FGla~~~~~~g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~-~~~-----~~  408 (447)
                      ||+++............|++||++.+..++.+.|||+ +|++.+++.++..|+............+... ...     +.
T Consensus        53 fG~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwS-lG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (176)
T smart00750       53 DGSVAFKTPEQSRVDPYFMAPEVIQGQSYTEKADIYS-LGITLYEALDYELPYNEERELSAILEILLNGMPADDPRDRSN  131 (176)
T ss_pred             ccceEeeccccCCCcccccChHHhcCCCCcchhhHHH-HHHHHHHHHhCCCCccccchhcHHHHHHHHHhccCCcccccc
Confidence            9999876554333456689999999888888889999 9999999999999986542222111111111 111     11


Q ss_pred             CccchH--HHHHHHHHhcccc-----CHHHHHcCCCCC
Q 013230          409 SSKDER--DLRSLKKRLDKYN-----SAKEAIFDPFFS  439 (447)
Q Consensus       409 ~~~~s~--~l~dLl~~mL~~d-----sa~elL~HPff~  439 (447)
                      +...+.  ++++|+.+||..|     |+.|+++|+|+.
T Consensus       132 ~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~  169 (176)
T smart00750      132 LESVSAARSFADFMRVCASRLPQRREAANHYLAHCRAL  169 (176)
T ss_pred             HHHHHhhhhHHHHHHHHHhcccccccCHHHHHHHHHHH
Confidence            223444  7999999999999     999999999874

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.72  E-value=3.1e-17  Score=174.64  Aligned_cols=138  Identities=19%  Similarity=0.176  Sum_probs=102.1

Q ss_pred             cceEEeccccceEEEEec----eeEEEEEecCCCccccc-ccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeee
Q 013230          135 ENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNG-EAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMF  209 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~-~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~  209 (447)
                      ...+.||+|+||.||+|.    .+++|+...+.. .... ......+.+.+|+.+++.++|        ++    ++...
T Consensus       336 ~~~~~iG~G~~g~Vy~~~~~~~~~v~k~~~~~~~-~~~~~~~~~~~~~~~~E~~~l~~l~~--------~~----i~~p~  402 (535)
T PRK09605        336 IPDHLIGKGAEADIKKGEYLGRDAVIKERVPKGY-RHPELDERLRTERTRAEARLLSEARR--------AG----VPTPV  402 (535)
T ss_pred             CccceeccCCcEEEEEEeecCccceeEEEecccc-cchhHHHHHHHHHHHHHHHHHHhhcc--------cC----CCeeE
Confidence            567899999999999965    466664332211 0000 111223567899999999988        66    55444


Q ss_pred             eEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhcCCHHHHHHHHHHHHHHHHHHHHh
Q 013230          210 EIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAA  289 (447)
Q Consensus       210 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~l~~~~~~~i~~Qil~gL~ylH~~  289 (447)
                      .+...                              ....++||||++|| +|.+++.    ....++.|++.+|.|||+ 
T Consensus       403 ~~~~~------------------------------~~~~~lv~E~~~g~-~L~~~l~----~~~~~~~~i~~~L~~lH~-  446 (535)
T PRK09605        403 IYDVD------------------------------PEEKTIVMEYIGGK-DLKDVLE----GNPELVRKVGEIVAKLHK-  446 (535)
T ss_pred             EEEEe------------------------------CCCCEEEEEecCCC-cHHHHHH----HHHHHHHHHHHHHHHHHh-
Confidence            33221                              34578999999977 9988764    567899999999999999 


Q ss_pred             CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC
Q 013230          290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT  342 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~  342 (447)
                      .||+||||||+|||++ ++                    .++|+|||+|+...
T Consensus       447 ~giiHrDlkp~NILl~-~~--------------------~~~liDFGla~~~~  478 (535)
T PRK09605        447 AGIVHGDLTTSNFIVR-DD--------------------RLYLIDFGLGKYSD  478 (535)
T ss_pred             CCCccCCCChHHEEEE-CC--------------------cEEEEeCcccccCC
Confidence            9999999999999994 43                    69999999998743

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.72  E-value=6.7e-17  Score=149.50  Aligned_cols=135  Identities=16%  Similarity=0.198  Sum_probs=97.2

Q ss_pred             EeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEEEE
Q 013230          139 KVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKVC  214 (447)
Q Consensus       139 ~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~~~  214 (447)
                      .||+|+||.||+|.    .+++|+..................++.+|+.++..+.+        ++..  +..++..  .
T Consensus         1 ~ig~G~~~~vy~~~~~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~--------~~i~--~p~~~~~--~   68 (199)
T TIGR03724         1 LIAKGAEAIIYLGDFLGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARK--------AGVN--TPVVYDV--D   68 (199)
T ss_pred             CCCCCceEEEEEeecCCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHH--------CCCC--CCEEEEE--E
Confidence            38999999999998    68999754321100000011123567889999999987        4411  2333322  1


Q ss_pred             eCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhcCCHHHHHHHHHHHHHHHHHHHHhCCeee
Q 013230          215 QGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEH  294 (447)
Q Consensus       215 ~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~l~~~~~~~i~~Qil~gL~ylH~~~~iiH  294 (447)
                                                    ++..+++|||++|+ +|.+++.-...   .++.|++.+|.++|+ .|++|
T Consensus        69 ------------------------------~~~~~lv~e~~~g~-~l~~~~~~~~~---~~~~~i~~~l~~lH~-~gi~H  113 (199)
T TIGR03724        69 ------------------------------PDNKTIVMEYIEGK-PLKDVIEEGND---ELLREIGRLVGKLHK-AGIVH  113 (199)
T ss_pred             ------------------------------CCCCEEEEEEECCc-cHHHHHhhcHH---HHHHHHHHHHHHHHH-CCeec
Confidence                                          34578999999977 88887642111   789999999999999 99999


Q ss_pred             ccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeec
Q 013230          295 RDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRIN  341 (447)
Q Consensus       295 rDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~  341 (447)
                      ||+||+|||++ ++                    .++++|||+++..
T Consensus       114 ~Dl~~~Nil~~-~~--------------------~~~liDfg~a~~~  139 (199)
T TIGR03724       114 GDLTTSNIIVR-DD--------------------KLYLIDFGLGKYS  139 (199)
T ss_pred             CCCCcceEEEE-CC--------------------cEEEEECCCCcCC
Confidence            99999999999 44                    7999999998764

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.71  E-value=8.6e-17  Score=149.11  Aligned_cols=141  Identities=15%  Similarity=0.112  Sum_probs=101.8

Q ss_pred             CcceEEeccccceEEEEec-----eeEEEEEecCCCcccccc--------------cccchHHHHHHHHHHHhccccccC
Q 013230          134 PENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGE--------------AQKKSEELLEEVVLSWTLNHLRRN  194 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~--------------~~~~~~~~~~Ei~il~~L~h~~~~  194 (447)
                      |.+.+.||+|+||.||+|.     .+|+|+++..........              .........+|+.++..+.+    
T Consensus        17 ~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~----   92 (198)
T cd05144          17 ESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYE----   92 (198)
T ss_pred             hhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHH----
Confidence            4777999999999999986     499998775431000000              00011236788999998876    


Q ss_pred             CCCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhcCCHHHHHH
Q 013230          195 EGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARS  274 (447)
Q Consensus       195 ~~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~l~~~~~~~  274 (447)
                          .+.  .+...++.                                  ...++||||+.|+ +|..+..  ...+..
T Consensus        93 ----~~i--~v~~~~~~----------------------------------~~~~lv~e~~~g~-~L~~~~~--~~~~~~  129 (198)
T cd05144          93 ----EGF--PVPKPIDW----------------------------------NRHAVVMEYIDGV-ELYRVRV--LEDPEE  129 (198)
T ss_pred             ----cCC--CCCceeec----------------------------------CCceEEEEEeCCc-chhhccc--cccHHH
Confidence                431  13333322                                  2358999999977 8876643  145677


Q ss_pred             HHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC
Q 013230          275 LLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT  342 (447)
Q Consensus       275 i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~  342 (447)
                      ++.|++.++.++|+ .||+||||||+|||++.++                    .++|+|||+|....
T Consensus       130 ~~~~i~~~l~~lh~-~gi~H~Dl~p~Nill~~~~--------------------~~~liDfg~~~~~~  176 (198)
T cd05144         130 VLDEILEEIVKAYK-HGIIHGDLSEFNILVDDDE--------------------KIYIIDWPQMVSTD  176 (198)
T ss_pred             HHHHHHHHHHHHHH-CCCCcCCCCcccEEEcCCC--------------------cEEEEECCccccCC
Confidence            89999999999999 9999999999999999876                    79999999986543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.67  E-value=8.6e-17  Score=157.34  Aligned_cols=202  Identities=17%  Similarity=0.130  Sum_probs=137.3

Q ss_pred             cccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCC-CCCceEEEEEEecCccchhhhhc---CCHHHHHHHH
Q 013230          201 ACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEF-PENQRYIVFVLQHGGKDLESFVL---LNINEARSLL  276 (447)
Q Consensus       201 ~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~  276 (447)
                      .|||||++..+|+..-+   .|-.+-..|-+..- ..-+|+.. ....+|+||.-..  ++|.+++.   .+....+.++
T Consensus       274 ~HPNIvri~~aF~dsv~---~lPda~~~YPdalp-~R~~p~g~g~~~tlylvMkrY~--~tLr~yl~~~~~s~r~~~~~l  347 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVK---VLPDAIERYPDALP-ARWYPSGAGEPKTLYLVMKRYR--QTLREYLWTRHRSYRTGRVIL  347 (598)
T ss_pred             CCCCEEeehhhhhhhhc---cCCchhhhCccccc-ceecccccCCCceEEEehhcch--hhHHHHHhcCCCchHHHHHHH
Confidence            36779999999875432   22222233322111 11122222 2357999999888  79999987   7888899999


Q ss_pred             HHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE----E-----
Q 013230          277 VQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI----F-----  347 (447)
Q Consensus       277 ~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~----i-----  347 (447)
                      .|+++|+.|||+ +||.|||+|.+|||+.-++..                -..+.|+|||++-.....|-    .     
T Consensus       348 aQlLEav~hL~~-hgvAhRDlKSDNiL~ElddD~----------------~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd  410 (598)
T KOG4158|consen  348 AQLLEAVTHLHK-HGVAHRDLKSDNILLELDDDE----------------IPQLVVADFGCCLADDNHGLQLPYESDEVD  410 (598)
T ss_pred             HHHHHHHHHHHH-ccchhhcccccceEEEecCCC----------------CcEEEEcccceeeecccccccccccccccc
Confidence            999999999999 999999999999999876521                12589999999865444321    0     


Q ss_pred             --EEecCCCCCCCCCCCC------CchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccC-CCCCccchHHHHH
Q 013230          348 --FLDLSQDPELFSGPKG------DKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKT-FDRSSKDERDLRS  418 (447)
Q Consensus       348 --~~~~~~~pelf~g~~~------~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~-~~~~~~~s~~l~d  418 (447)
                        ...-+|+||+|..-.+      ..+.|.|+ .|.+.|+.+....||+..--+. +.....++.. .+.++.+.+.+++
T Consensus       411 ~GGNa~lmAPEi~ta~PGp~avvny~kAD~WA-~GalaYEIfg~~NPFY~rGem~-L~~r~Yqe~qLPalp~~vpp~~rq  488 (598)
T KOG4158|consen  411 LGGNAKLMAPEIATAVPGPNAVVNYEKADTWA-AGALAYEIFGRSNPFYKRGEML-LDTRTYQESQLPALPSRVPPVARQ  488 (598)
T ss_pred             CCCcceecchhhhhcCCCCceeeccchhhhhh-hhhhHHHHhccCCcccccchhe-echhhhhhhhCCCCcccCChHHHH
Confidence              0112578888843222      23459999 9999999999999998731111 0111111222 3346778999999


Q ss_pred             HHHHhcccc
Q 013230          419 LKKRLDKYN  427 (447)
Q Consensus       419 Ll~~mL~~d  427 (447)
                      |+..+|+.|
T Consensus       489 lV~~lL~r~  497 (598)
T KOG4158|consen  489 LVFDLLKRD  497 (598)
T ss_pred             HHHHHhcCC
Confidence            999999999

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.66  E-value=6.6e-16  Score=141.32  Aligned_cols=75  Identities=17%  Similarity=0.135  Sum_probs=59.8

Q ss_pred             eEEEEEEecCccchhhhhc-CCH-HHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCccccccc
Q 013230          248 RYIVFVLQHGGKDLESFVL-LNI-NEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRT  325 (447)
Q Consensus       248 ~~ivmE~~~gG~~L~~~i~-l~~-~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~  325 (447)
                      .++||||+.||..+...+. ... ..++.++.|++.++.++|...||+||||||+||+++ ++                 
T Consensus        90 ~~lv~e~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~lh~~~~ivH~Dl~p~Nili~-~~-----------------  151 (187)
T cd05119          90 HVLVMEFIGGDGIPAPRLKDVRLLEDPEELYDQILELMRKLYREAGLVHGDLSEYNILVD-DG-----------------  151 (187)
T ss_pred             CEEEEEEeCCCCccChhhhhhhhcccHHHHHHHHHHHHHHHhhccCcCcCCCChhhEEEE-CC-----------------
Confidence            6899999997622222222 222 778899999999999999769999999999999999 55                 


Q ss_pred             CCCcEEEeeccceeecCC
Q 013230          326 FGLSVTIIDFTLSRINTG  343 (447)
Q Consensus       326 ~~~~vkL~DFGla~~~~~  343 (447)
                         .++|+|||+|+....
T Consensus       152 ---~~~liDfg~a~~~~~  166 (187)
T cd05119         152 ---KVYIIDVPQAVEIDH  166 (187)
T ss_pred             ---cEEEEECcccccccC
Confidence               799999999876543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=4.5e-16  Score=170.37  Aligned_cols=174  Identities=18%  Similarity=0.153  Sum_probs=128.0

Q ss_pred             CcceEEeccccceEEEEece-----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          134 PENIVKVGEGTFGEAFLAGN-----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~-----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      |.+-+.||+|+||.||+|.+     ||+|+-.....+           ++.-=.+++.+|+         +-..+.|..+
T Consensus       700 ~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~W-----------EfYI~~q~~~RLk---------~~~~~~~~~~  759 (974)
T KOG1166|consen  700 FCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPW-----------EFYICLQVMERLK---------PQMLPSIMHI  759 (974)
T ss_pred             EEEEeeeccccceEEEEeecCCCcEEEEEeecCCCce-----------eeeehHHHHHhhc---------hhhhcchHHH
Confidence            68889999999999999973     999975543221           1111123444444         1112226666


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~  284 (447)
                      ..+++.                              .+..++|+||.+.| +|.+++.    +++..+.+|..|++.-+.
T Consensus       760 ~~a~~~------------------------------~~~S~lv~ey~~~G-tlld~~N~~~~m~e~lv~~~~~qml~ive  808 (974)
T KOG1166|consen  760 SSAHVF------------------------------QNASVLVSEYSPYG-TLLDLINTNKVMDEYLVMFFSCQMLRIVE  808 (974)
T ss_pred             HHHHcc------------------------------CCcceeeeeccccc-cHHHhhccCCCCCchhhhHHHHHHHHHHH
Confidence            666543                              45689999999999 9999987    899999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC--CC-----CEEEEecCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT--GE-----DIFFLDLSQDPEL  357 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~--~~-----g~i~~~~~~~pel  357 (447)
                      +||. ++|||+||||+|.||...-.             .+.....++|||||.|-.+.  .+     |..-.+.+...|+
T Consensus       809 ~lH~-~~IIHgDiKPDNfll~~~~~-------------~~~~~~~l~lIDfG~siDm~lfp~~~~F~~~~~td~f~C~EM  874 (974)
T KOG1166|consen  809 HLHA-MGIIHGDIKPDNFLLRREIC-------------ADSDSKGLYLIDFGRSIDMKLFPDGTKFKAVWHTDLFDCIEM  874 (974)
T ss_pred             HHHh-cceecccCCcceeEeecccC-------------CCCcccceEEEecccceeeeEcCCCcEEeeeeccccchhHHH
Confidence            9999 99999999999999987531             11113469999999986542  22     3334556777888


Q ss_pred             CCCCCCCchHHHHHh
Q 013230          358 FSGPKGDKQFDTYRK  372 (447)
Q Consensus       358 f~g~~~~~~~di~s~  372 (447)
                      -.|....+|.|.|-+
T Consensus       875 ~~grpWtYq~DyfGl  889 (974)
T KOG1166|consen  875 REGRPWTYQIDYFGL  889 (974)
T ss_pred             hcCCCCchhhhhHHH
Confidence            899999999987763

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.64  E-value=1.3e-16  Score=171.89  Aligned_cols=143  Identities=18%  Similarity=0.145  Sum_probs=114.5

Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---------------
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---------------  344 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---------------  344 (447)
                      +.+++|+|+ .||+|||+||+|.||..-+                    ++|++|||+++.....               
T Consensus       153 vla~Eylh~-ygivhrdlkpdnllIT~mG--------------------hiKlTDfgLsk~GLms~atnl~eg~I~k~t~  211 (1205)
T KOG0606|consen  153 VLAVEYLHS-YGIVHRDLKPDNLLITSMG--------------------HIKLTDFGLSKKGLMSLATNLKEGHIEKDTH  211 (1205)
T ss_pred             hHHhHhhcc-CCeecCCCCCCcceeeecc--------------------cccccchhhhhhhhhhccchhhhcchHHHHH
Confidence            789999999 9999999999999999998                    8999999999764221               


Q ss_pred             -----CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC-CccchHHHHH
Q 013230          345 -----DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR-SSKDERDLRS  418 (447)
Q Consensus       345 -----g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~-~~~~s~~l~d  418 (447)
                           +...+..|.+|++..-..+...+|+|+ ||++.++..-+..||....-.+.+...+.....++. .....+|++|
T Consensus       212 Ef~dKqvcgTPeyiaPeVilrqgygkpvdwwa-mGiIlyeFLVgcvpffGdtpeelfg~visd~i~wpE~dea~p~Ea~d  290 (1205)
T KOG0606|consen  212 EFQDKQVCGTPEYIAPEVILRQGYGKPVDWWA-MGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPEEDEALPPEAQD  290 (1205)
T ss_pred             HhhhccccCCccccChhhhhhhccCCCccHHH-HHHHHHHHheeeeeccCCCHHHHHhhhhhhhccccccCcCCCHHHHH
Confidence                 434556688898887666777789999 999999999999998876444444444433334443 3456789999


Q ss_pred             HHHHhcccc--------CHHHHHcCCCCCCCCCC
Q 013230          419 LKKRLDKYN--------SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       419 Ll~~mL~~d--------sa~elL~HPff~~~~~~  444 (447)
                      +|.+||+.+        .|-++.+|+||+.+..-
T Consensus       291 li~~LL~qnp~~Rlgt~ga~evk~h~ff~~LDw~  324 (1205)
T KOG0606|consen  291 LIEQLLRQNPLCRLGTGGALEVKQHGFFQLLDWK  324 (1205)
T ss_pred             HHHHHHHhChHhhcccchhhhhhhccceeecccc
Confidence            999999999        78889999999988654

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.61  E-value=6.8e-15  Score=140.63  Aligned_cols=142  Identities=18%  Similarity=0.153  Sum_probs=96.2

Q ss_pred             EEec-cccceEEEEec----eeEEEEEecCCCccc--ccc---cccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          138 VKVG-EGTFGEAFLAG----NTVCKVVPIDGDLKV--NGE---AQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       138 ~~LG-~G~fG~V~~a~----~vAiK~i~~~~~~~~--~~~---~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      ..|| .|+.|+||++.    .+|+|.+...+.+..  ...   .......+.+|+.++..|.+        ++.  .++.
T Consensus        37 ~~lg~~~g~gtv~~v~~~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~--------~gi--~vP~  106 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQTPGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYE--------AGL--PVPR  106 (239)
T ss_pred             ceeecCCCCccEEEEEeCCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHh--------CCC--CCce
Confidence            4566 67777777654    589987754321000  000   01123567899999999988        441  1344


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~  284 (447)
                      .+++....+.                          .....++|||+++|+.+|.+++.   +++.    .+.||+.+|.
T Consensus       107 pl~~~~~~~~--------------------------~~~~~~lV~e~l~G~~~L~~~l~~~~l~~~----~~~~i~~~l~  156 (239)
T PRK01723        107 PIAARVVRHG--------------------------LFYRADILIERIEGARDLVALLQEAPLSEE----QWQAIGQLIA  156 (239)
T ss_pred             eEeeeeeecC--------------------------cceeeeEEEEecCCCCCHHHHHhcCCCCHH----HHHHHHHHHH
Confidence            4544222110                          01124699999997669988876   4443    3678999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceee
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRI  340 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~  340 (447)
                      +||+ .||+||||||+|||++.++                    .++|+|||.++.
T Consensus       157 ~lH~-~GI~HrDlkp~NILv~~~~--------------------~v~LIDfg~~~~  191 (239)
T PRK01723        157 RFHD-AGVYHADLNAHNILLDPDG--------------------KFWLIDFDRGEL  191 (239)
T ss_pred             HHHH-CCCCCCCCCchhEEEcCCC--------------------CEEEEECCCccc
Confidence            9999 9999999999999999876                    799999998765

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.58  E-value=2.9e-14  Score=123.94  Aligned_cols=132  Identities=21%  Similarity=0.283  Sum_probs=102.1

Q ss_pred             ceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeE
Q 013230          136 NIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEI  211 (447)
Q Consensus       136 ~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~  211 (447)
                      +++.||+|.++.||++.    .+++|.+....       .   ...+.+|+.+++.+.+. .     .+    +++++.+
T Consensus         2 ~~~~i~~g~~~~v~~~~~~~~~~~iK~~~~~~-------~---~~~~~~e~~~~~~l~~~-~-----~~----~p~~~~~   61 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTKDEDYVLKINPSRE-------K---GADREREVAILQLLARK-G-----LP----VPKVLAS   61 (155)
T ss_pred             cceecccccccceEEEEecCCeEEEEecCCCC-------c---hhHHHHHHHHHHHHHHc-C-----CC----CCeEEEE
Confidence            45789999999999998    48888765321       1   35688999999999872 1     12    5666655


Q ss_pred             EEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhcCCHHHHHHHHHHHHHHHHHHHHh--
Q 013230          212 KVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAA--  289 (447)
Q Consensus       212 ~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~l~~~~~~~i~~Qil~gL~ylH~~--  289 (447)
                      +.                              ..+..|++|||+.|+ .+..+   +......++.+++.+|+++|..  
T Consensus        62 ~~------------------------------~~~~~~~v~e~~~g~-~~~~~---~~~~~~~~~~~~~~~l~~lh~~~~  107 (155)
T cd05120          62 GE------------------------------SDGWSYLLMEWIEGE-TLDEV---SEEEKEDIAEQLAELLAKLHQLPL  107 (155)
T ss_pred             cC------------------------------CCCccEEEEEecCCe-ecccC---CHHHHHHHHHHHHHHHHHHhCCCc
Confidence            21                              135689999999866 66554   5667788899999999999972  


Q ss_pred             CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeec
Q 013230          290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRIN  341 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~  341 (447)
                      .+++|+|+||+|||++..+                    .++++|||.++..
T Consensus       108 ~~i~H~Dl~~~Nil~~~~~--------------------~~~l~Df~~~~~~  139 (155)
T cd05120         108 LVLCHGDLHPGNILVDDGK--------------------ILGIIDWEYAGYG  139 (155)
T ss_pred             eEEEecCCCcceEEEECCc--------------------EEEEEecccccCC
Confidence            3799999999999999865                    7999999988753

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.52  E-value=2.1e-14  Score=140.44  Aligned_cols=227  Identities=15%  Similarity=0.123  Sum_probs=169.1

Q ss_pred             CcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          134 PENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      ++....+-+|+||.||.|.           .|-+|.++..       ..+-....++.|.-++..+.|        ||  
T Consensus       286 v~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~-------AS~iQv~~~L~es~lly~~sH--------~n--  348 (563)
T KOG1024|consen  286 VRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQH-------ASQIQVNLLLQESMLLYGASH--------PN--  348 (563)
T ss_pred             eechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhc-------ccHHHHHHHHHHHHHHhcCcC--------CC--
Confidence            4777789999999999993           2556655422       334455678889888888888        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------------CCHH
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------------LNIN  270 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------------l~~~  270 (447)
                        +..+.++.+..                             ...-+.++.+..-| +|..|+.            ++-.
T Consensus       349 --ll~V~~V~ie~-----------------------------~~~P~V~y~~~~~g-NLK~FL~~Cr~~~~~~aqtvtt~  396 (563)
T KOG1024|consen  349 --LLSVLGVSIED-----------------------------YATPFVLYPATGVG-NLKSFLQICRGDDPSYAQTVTTI  396 (563)
T ss_pred             --ccceeEEEeec-----------------------------cCcceEEEeccCcc-hHHHHHHHhccCCCccccchhHH
Confidence              88888885432                             24456777777767 9999986            6677


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--CEEE
Q 013230          271 EARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--DIFF  348 (447)
Q Consensus       271 ~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--g~i~  348 (447)
                      ++..++.|+..|++|||+ +||||.||-..|.+|+..-                    .|||+|=.+||..-+.  .|+.
T Consensus       397 qlV~masQla~am~hlh~-~~ViHkDiAaRNCvIdd~L--------------------qVkltDsaLSRDLFP~DYhcLG  455 (563)
T KOG1024|consen  397 QLVLMASQLAMAMEHLHN-HGVIHKDIAARNCVIDDQL--------------------QVKLTDSALSRDLFPGDYHCLG  455 (563)
T ss_pred             HHHHHHHHHHHHHHHHHh-cCcccchhhhhcceehhhe--------------------eEEeccchhccccCcccccccC
Confidence            888899999999999999 9999999999999999985                    8999999999976443  2322


Q ss_pred             Ee-----cCCCCCCCCCCCCCchHHHHHhhccCCcccccC-CCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHH
Q 013230          349 LD-----LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEG-SFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKR  422 (447)
Q Consensus       349 ~~-----~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~-~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~  422 (447)
                      -.     -+|++|-.....+....|+|+ +|+..+++.+- ..|+.... +......+....++..|-+.++++...+.-
T Consensus       456 DnEnRPvkWMslEal~n~~yssasDvWs-fGVllWELmtlg~~PyaeID-PfEm~~ylkdGyRlaQP~NCPDeLf~vMac  533 (563)
T KOG1024|consen  456 DNENRPVKWMSLEALQNSHYSSASDVWS-FGVLLWELMTLGKLPYAEID-PFEMEHYLKDGYRLAQPFNCPDELFTVMAC  533 (563)
T ss_pred             CCCCCcccccCHHHHhhhhhcchhhhHH-HHHHHHHHHhcCCCCccccC-HHHHHHHHhccceecCCCCCcHHHHHHHHH
Confidence            11     167777777777777889999 99988887654 46665432 222333444445666677788999999999


Q ss_pred             hcccc-----CHHHH
Q 013230          423 LDKYN-----SAKEA  432 (447)
Q Consensus       423 mL~~d-----sa~el  432 (447)
                      |...+     +.+|+
T Consensus       534 CWallpeeRPsf~Ql  548 (563)
T KOG1024|consen  534 CWALLPEERPSFSQL  548 (563)
T ss_pred             HHhcCcccCCCHHHH
Confidence            98877     55554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.50  E-value=4.7e-15  Score=160.28  Aligned_cols=230  Identities=17%  Similarity=0.184  Sum_probs=155.0

Q ss_pred             CCcceEEeccccceEEEEece----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      ++...+.||.+.|=+|.+|++    |++|++-+....    ..-....+.++|++ ....++        ||+    +.+
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~vVvKVFvk~~p~----~sL~~~~qrL~~ik-~~l~~~--------pn~----lPf   86 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGLVVVKVFVKQDPT----ISLRPFKQRLEEIK-FALMKA--------PNC----LPF   86 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCceEEEEEEeccCCC----CCchHHHHHHHHHH-HHhhcC--------Ccc----cch
Confidence            347889999999999999985    899987654320    11122344555666 444455        884    443


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~  284 (447)
                      ..+                              ..++...|+|=+|..  .+|++-+.    +..-+-+.|++||+.||.
T Consensus        87 qk~------------------------------~~t~kAAylvRqyvk--hnLyDRlSTRPFL~~iEKkWiaFQLL~al~  134 (1431)
T KOG1240|consen   87 QKV------------------------------LVTDKAAYLVRQYVK--HNLYDRLSTRPFLVLIEKKWIAFQLLKALS  134 (1431)
T ss_pred             HHH------------------------------HHhhHHHHHHHHHHh--hhhhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence            333                              112444677778887  58888776    778889999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC----CCC--EEEEec------C
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT----GED--IFFLDL------S  352 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~----~~g--~i~~~~------~  352 (447)
                      -+|. .||+|+|||.|||||.+-.                    -+.|+||..-+-.-    .++  ..|++.      |
T Consensus       135 qcH~-~gVcHGDIKsENILiTSWN--------------------W~~LtDFAsFKPtYLPeDNPadf~fFFDTSrRRtCY  193 (1431)
T KOG1240|consen  135 QCHK-LGVCHGDIKSENILITSWN--------------------WLYLTDFASFKPTYLPEDNPADFTFFFDTSRRRTCY  193 (1431)
T ss_pred             HHHH-cCccccccccceEEEeeec--------------------hhhhhcccccCCccCCCCCcccceEEEecCCceeee
Confidence            9999 9999999999999999986                    68899998665321    111  133333      7


Q ss_pred             CCCCCCCCCC-----------CCchHHHHHhhccCCcccccCCCCCCh-hHHHHHHHHH-HhhccCCCCCccchHHHHHH
Q 013230          353 QDPELFSGPK-----------GDKQFDTYRKMKKVTEDQWEGSFPKTN-VLWLVYLVDM-LLLKKTFDRSSKDERDLRSL  419 (447)
Q Consensus       353 ~~pelf~g~~-----------~~~~~di~s~lg~~~~~~~~~~~p~~~-~~~~~~~~~~-l~~~~~~~~~~~~s~~l~dL  419 (447)
                      .|||-|....           -...+|||+ +|++..+.|....|..+ .....|.... ...+..+.  +-.+..++.|
T Consensus       194 iAPERFv~~~~~~~~~q~~~~L~paMDIFS-~GCViaELf~Eg~PlF~LSQL~aYr~~~~~~~e~~Le--~Ied~~~Rnl  270 (1431)
T KOG1240|consen  194 IAPERFVSALGKTSVGQDAPLLTPAMDIFS-AGCVIAELFLEGRPLFTLSQLLAYRSGNADDPEQLLE--KIEDVSLRNL  270 (1431)
T ss_pred             cChHhhhccccccccCCcccccChhhhhhh-hhHHHHHHHhcCCCcccHHHHHhHhccCccCHHHHHH--hCcCccHHHH
Confidence            8999994311           123459999 99999998877544433 2333332220 00000010  1134578999


Q ss_pred             HHHhcccc-----CHHHHHcC
Q 013230          420 KKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       420 l~~mL~~d-----sa~elL~H  435 (447)
                      |..|++.|     ||++.|+-
T Consensus       271 il~Mi~rdPs~RlSAedyL~~  291 (1431)
T KOG1240|consen  271 ILSMIQRDPSKRLSAEDYLQK  291 (1431)
T ss_pred             HHHHHccCchhccCHHHHHHh
Confidence            99999999     99999875

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.48  E-value=2.3e-14  Score=139.01  Aligned_cols=238  Identities=20%  Similarity=0.170  Sum_probs=132.1

Q ss_pred             cceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      ...+.||.|+||.||.+.+      +|+|+......     ......+.+.+|......+.+......  -+.+-.++--
T Consensus        15 ~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~-----~~~~~~~~~~~e~l~~~~~~~~~~p~~--a~~~~r~l~P   87 (288)
T PF14531_consen   15 VRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPAD-----ASANEYEQLKEEQLAITLFPGVKNPKE--AYRHLRFLVP   87 (288)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESST-----THTTHHHHHHHHHHGGGGSTT--SHHH--HHHHH-B---
T ss_pred             EEccccccCCceEEEEEEEccCCceEEEEEEecccc-----cchHHHHHHHHHHHHhhhhccCCCHHH--HHHhceEEee
Confidence            6778999999999999984      89998776542     333344566666544433322111000  0001113333


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCC-----ceEEEEEEecCccchhhhhc-------C---CHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPEN-----QRYIVFVLQHGGKDLESFVL-------L---NINEAR  273 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ivmE~~~gG~~L~~~i~-------l---~~~~~~  273 (447)
                      +|.-...|.-+         +.+..         ...+     ..+++|+-+.  .||.+++.       .   ....++
T Consensus        88 ~d~~~i~~~~~---------~~~~~---------~~~~~~~v~n~~~l~P~~~--~dL~~~~~~l~~~~~~~~~l~~~ar  147 (288)
T PF14531_consen   88 LDLLRIPGKPP---------FFERG---------PGQSIYWVLNRFLLMPRAQ--GDLQDLVEALFSRAQTHSPLAFAAR  147 (288)
T ss_dssp             SEEEEETTS-S---------EEEEC---------ETTEEEEEESEEEEEE--S--EEHHHHHHHHHHHTTTSHHHHHHHH
T ss_pred             eEEEEEcCCCc---------ceecC---------CCCccceeehhhhccchhh--hcHHHHHHHHhhcccccchhHHHHH
Confidence            33322222110         00000         0001     2467888776  48988865       1   123343


Q ss_pred             -HHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE--EEEe
Q 013230          274 -SLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI--FFLD  350 (447)
Q Consensus       274 -~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~--i~~~  350 (447)
                       .+..|++..+++||+ .|++|+||||+|++++.+|                    .+.|+||+.....+....  ....
T Consensus       148 l~lT~Q~I~lvA~Lh~-~GlVHgdi~~~nfll~~~G--------------------~v~Lg~F~~~~r~g~~~~~~~~~~  206 (288)
T PF14531_consen  148 LSLTVQMIRLVANLHS-YGLVHGDIKPENFLLDQDG--------------------GVFLGDFSSLVRAGTRYRCSEFPV  206 (288)
T ss_dssp             HHHHHHHHHHHHHHHH-TTEEEST-SGGGEEE-TTS---------------------EEE--GGGEEETTEEEEGGGS-T
T ss_pred             HHHHHHHHHHHHHHhh-cceEecccceeeEEEcCCC--------------------CEEEcChHHHeecCceeeccCCCc
Confidence             455999999999999 9999999999999999998                    799999998766543221  0111


Q ss_pred             cCCCCCCCCCC--------CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHH
Q 013230          351 LSQDPELFSGP--------KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKR  422 (447)
Q Consensus       351 ~~~~pelf~g~--------~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~  422 (447)
                      .++.||+....        ..+...|.|+ +|...+.+|-+..|+.......      .....|.....++...++||++
T Consensus       207 ~~~PPe~~~~~~~~~~~~~~~t~~~DaW~-LG~~ly~lWC~~lPf~~~~~~~------~~~~~f~~C~~~Pe~v~~LI~~  279 (288)
T PF14531_consen  207 AFTPPELESCAGQFGQNNAPYTFATDAWQ-LGITLYSLWCGRLPFGLSSPEA------DPEWDFSRCRDMPEPVQFLIRG  279 (288)
T ss_dssp             TTS-HHHHHHHTSCHHSEEEE-HHHHHHH-HHHHHHHHHHSS-STCCCGGGS------TSGGGGTTSS---HHHHHHHHH
T ss_pred             ccCChhhhhhhcccCcccceeeeccCHHH-HHHHHHHHHHccCCCCCCCccc------cccccchhcCCcCHHHHHHHHH
Confidence            24444433221        2334459999 9999999999999986431100      0011344444789999999999


Q ss_pred             hcccc
Q 013230          423 LDKYN  427 (447)
Q Consensus       423 mL~~d  427 (447)
                      ||++|
T Consensus       280 lL~~~  284 (288)
T PF14531_consen  280 LLQRN  284 (288)
T ss_dssp             HT-SS
T ss_pred             HccCC
Confidence            99986

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.38  E-value=2.8e-14  Score=152.65  Aligned_cols=238  Identities=23%  Similarity=0.224  Sum_probs=174.6

Q ss_pred             CCcceEEeccccceEEEEece-------eEEEEEecCCCcccccccccchHHHHHHHHHHHhcc-ccccCCCCCCCcccc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN-------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN-HLRRNEGDTLNACTT  204 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~-------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~n~~~~  204 (447)
                      .|++.+.||+|+|+.|-.+.+       +|+|.+....      ......+.+..|..+-+.+. |        .|    
T Consensus        21 ~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~------~~~~~~~~i~~e~~~~~~~s~h--------~n----   82 (601)
T KOG0590|consen   21 QYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPP------KSEDSSEHIDTETDIQKKLSKH--------SN----   82 (601)
T ss_pred             cccccccccccccchhhhhhhcCCCcceeeccCCCCCC------CccchhhhcCcccccccccccc--------cc----
Confidence            347888899999999998863       5555544332      12233455666777777776 5        56    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhh-c-----CCHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFV-L-----LNINEARSLLVQ  278 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i-~-----l~~~~~~~i~~Q  278 (447)
                      ++.+++..                              ...+..++.++|..|| ++..-+ .     .+...+..++.|
T Consensus        83 ~~~~~~~~------------------------------~~~~~~~~~~~~s~g~-~~f~~i~~~~~~~~~~~~~~~~~~q  131 (601)
T KOG0590|consen   83 TVHMIEPS------------------------------SSPRSYLLSLSYSDGG-SLFSKISHPDSTGTSSSSASRYLPQ  131 (601)
T ss_pred             ccccCCcc------------------------------CCCcccccccCccccc-ccccccccCCccCCCCcchhhhhhh
Confidence            89988873                              2356789999998887 888777 3     778889999999


Q ss_pred             HHHHHHHHH-HhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCC-CCE-------EE-
Q 013230          279 VTAGLAVAE-AAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG-EDI-------FF-  348 (447)
Q Consensus       279 il~gL~ylH-~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~-~g~-------i~-  348 (447)
                      +..|+.|+| . .++.||||||+|.+++..+.                   .+|++|||+|..... .|.       .. 
T Consensus       132 l~s~l~~~H~~-~~~~h~~ikP~n~~l~~s~~-------------------~l~~~df~~At~~~~~~g~~~~~~~~~g~  191 (601)
T KOG0590|consen  132 LNSGLSYLHPE-NGVTHRDIKPSNSLLDESGS-------------------ALKIADFGLATAYRNKNGAERSLKDRCGS  191 (601)
T ss_pred             hccCccccCcc-cccccCCCCCccchhccCCC-------------------cccCCCchhhccccccCCcceeeecccCC
Confidence            999999999 7 99999999999999999862                   599999999987665 321       11 


Q ss_pred             EecCCCCCCCCCCCCCc-hHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhcc---CCCCCccchHHHHHHHHHhc
Q 013230          349 LDLSQDPELFSGPKGDK-QFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKK---TFDRSSKDERDLRSLKKRLD  424 (447)
Q Consensus       349 ~~~~~~pelf~g~~~~~-~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~---~~~~~~~~s~~l~dLl~~mL  424 (447)
                      ..-|++||.+.+..+.. ..++|+ +|.....+..+..|..................   ....+...+..+.+++.++|
T Consensus       192 s~~y~a~E~~~~~~~~~~~~d~~S-~g~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~l  270 (601)
T KOG0590|consen  192 SPPYGAPEHLSGKAYRGPSVDVWS-LGIVLSAMLTGELPWDFPSRKDGRYSSWKSNKGRFTQLPWNSISDQAHDLLHKIL  270 (601)
T ss_pred             CCCCCCcccccchhhcCCCccccc-ccccccccccCCCCccccccccccceeecccccccccCccccCChhhhhcccccc
Confidence            33488899988854444 449999 88888888888777654322111111111111   23345778999999999999


Q ss_pred             ccc-----CHHHHHcCCCCCC
Q 013230          425 KYN-----SAKEAIFDPFFSD  440 (447)
Q Consensus       425 ~~d-----sa~elL~HPff~~  440 (447)
                      ..+     +.+++-.+||+..
T Consensus       271 ~~~~~~r~s~~~~~~d~~~~~  291 (601)
T KOG0590|consen  271 KENPSNRLSIEELKLDNWLSS  291 (601)
T ss_pred             cCCchhccccccccccccccc
Confidence            866     8999999999987

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=99.38  E-value=2.3e-12  Score=126.20  Aligned_cols=144  Identities=32%  Similarity=0.569  Sum_probs=123.2

Q ss_pred             CCceEEEEEEecCccchhhhhcCCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccc
Q 013230          245 ENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVR  324 (447)
Q Consensus       245 ~~~~~ivmE~~~gG~~L~~~i~l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~  324 (447)
                      +++.|++.-+-.+|..|...-.-...++..|+.+.+.-+.-+.....+.|||+...||||+ +|                
T Consensus       296 de~~y~yl~~kdhgt~is~ik~~~~~e~lsff~s~~sil~~lekkf~fehrnlt~~niLId-~G----------------  358 (488)
T COG5072         296 DETLYLYLHFKDHGTPISIIKADRSEEELSFFWSCISILDILEKKFPFEHRNLTLDNILID-EG----------------  358 (488)
T ss_pred             CCceEEEEEEecCCceeeeeecccHHHHHHHHHHHHHHHhhhhhcCCcccccccccceeee-cC----------------
Confidence            4455555444556756654443678899999999999888888779999999999999999 66                


Q ss_pred             cCCCcEEEeeccceeecCCCCEEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhcc
Q 013230          325 TFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKK  404 (447)
Q Consensus       325 ~~~~~vkL~DFGla~~~~~~g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~  404 (447)
                          .|.|+||-+||...+.|.+.+..+-.|.+|.| .++.|++||+.|..++...|..+.|.+|+.|..|+...++.+.
T Consensus       359 ----nvtLIDfklsRl~~~q~~isy~rldhp~lF~G-~dd~QFeIYrlMr~l~~g~wa~F~P~TNvlWL~yLs~~llkk~  433 (488)
T COG5072         359 ----NVTLIDFKLSRLSYSQGIISYNRLDHPDLFNG-VDDYQFEIYRLMRRLLKGRWAQFEPITNVLWLYYLSHQLLKKK  433 (488)
T ss_pred             ----ceEEEEeeeeecccCCceeeccccCchhhhcC-ccceeeeHHHHHHHHhcCcHHhcccchhhHHHHHHHHHHHhhc
Confidence                79999999999999999999999999999998 5688999999999999999999999999999999999998777


Q ss_pred             CCCCCc
Q 013230          405 TFDRSS  410 (447)
Q Consensus       405 ~~~~~~  410 (447)
                      .+..+.
T Consensus       434 ~~~~~k  439 (488)
T COG5072         434 NLSSPK  439 (488)
T ss_pred             cccccc
Confidence            766543

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.38  E-value=1.9e-12  Score=134.21  Aligned_cols=77  Identities=21%  Similarity=0.286  Sum_probs=58.2

Q ss_pred             CceEEEEEEecCccchhhhhcCCH--HHHHHHHHHHHH-HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccc
Q 013230          246 NQRYIVFVLQHGGKDLESFVLLNI--NEARSLLVQVTA-GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMF  322 (447)
Q Consensus       246 ~~~~ivmE~~~gG~~L~~~i~l~~--~~~~~i~~Qil~-gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~  322 (447)
                      +..++||||++|+ +|.++.....  .....++.+++. .+..+|. .|++|+|+||+||++..++              
T Consensus       231 ~~~vLvmE~i~G~-~L~~~~~~~~~~~~~~~ia~~~~~~~l~ql~~-~g~~H~D~hPgNilv~~~g--------------  294 (437)
T TIGR01982       231 SERVLTMEWIDGI-PLSDIAALDEAGLDRKALAENLARSFLNQVLR-DGFFHADLHPGNIFVLKDG--------------  294 (437)
T ss_pred             CCceEEEEeECCc-ccccHHHHHhcCCCHHHHHHHHHHHHHHHHHh-CCceeCCCCcccEEECCCC--------------
Confidence            3468999999976 8877654110  022345555555 4678899 9999999999999998887              


Q ss_pred             cccCCCcEEEeeccceeecCCC
Q 013230          323 VRTFGLSVTIIDFTLSRINTGE  344 (447)
Q Consensus       323 ~~~~~~~vkL~DFGla~~~~~~  344 (447)
                            .++|+|||++......
T Consensus       295 ------~i~liDfG~~~~l~~~  310 (437)
T TIGR01982       295 ------KIIALDFGIVGRLSEE  310 (437)
T ss_pred             ------cEEEEeCCCeeECCHH
Confidence                  7999999999876543

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.38  E-value=5.9e-13  Score=140.10  Aligned_cols=74  Identities=20%  Similarity=0.214  Sum_probs=53.9

Q ss_pred             CceEEEEEEecCccchhhhhc----------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCcccccc
Q 013230          246 NQRYIVFVLQHGGKDLESFVL----------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFL  315 (447)
Q Consensus       246 ~~~~ivmE~~~gG~~L~~~i~----------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~  315 (447)
                      +..+|||||++|+ .+.++..          +.+..+..++.|++       . .|++|+|+||+||+++.++..     
T Consensus       234 t~~VLvmE~i~G~-~l~d~~~l~~~g~d~~~la~~~v~~~~~Qif-------~-~GffHaDpHPGNIlv~~~g~~-----  299 (537)
T PRK04750        234 SETVMVMERMYGI-PVSDVAALRAAGTDMKLLAERGVEVFFTQVF-------R-DGFFHADMHPGNIFVSYDPPE-----  299 (537)
T ss_pred             CCceEEEeeecCc-cHHhHHHHHhcCCCHHHHHHHHHHHHHHHHH-------h-CCeeeCCCChHHeEEecCCCC-----
Confidence            4478999999977 7765421          34444555666654       5 999999999999999987510     


Q ss_pred             ccCcccccccCCCcEEEeeccceeecCCC
Q 013230          316 LDGKQMFVRTFGLSVTIIDFTLSRINTGE  344 (447)
Q Consensus       316 ~~~~~~~~~~~~~~vkL~DFGla~~~~~~  344 (447)
                                . ..++++|||++......
T Consensus       300 ----------~-~~i~llDFGivg~l~~~  317 (537)
T PRK04750        300 ----------N-PRYIALDFGIVGSLNKE  317 (537)
T ss_pred             ----------C-CeEEEEecceEEECCHH
Confidence                      0 16999999999876543

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.35  E-value=6e-12  Score=112.90  Aligned_cols=125  Identities=14%  Similarity=0.117  Sum_probs=89.6

Q ss_pred             eEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEE
Q 013230          137 IVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIK  212 (447)
Q Consensus       137 ~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~  212 (447)
                      ++.|+.|.++.||+++    .+++|+......         ......+|+.+++.+.+        .+.   +.+++...
T Consensus         3 ~~~l~~G~~~~vy~~~~~~~~~~lK~~~~~~~---------~~~~~~~E~~~l~~l~~--------~~~---~P~~~~~~   62 (170)
T cd05151           3 ISPLKGGMTNKNYRVEVANKKYVVRIPGNGTE---------LLINRENEAENSKLAAE--------AGI---GPKLYYFD   62 (170)
T ss_pred             eeecCCcccCceEEEEECCeEEEEEeCCCCcc---------cccCHHHHHHHHHHHHH--------hCC---CCceEEEe
Confidence            5789999999999986    488887643210         11245789999999876        332   22333331


Q ss_pred             EEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhcCCHHHHHHHHHHHHHHHHHHHHhCCe
Q 013230          213 VCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAYEF  292 (447)
Q Consensus       213 ~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~l~~~~~~~i~~Qil~gL~ylH~~~~i  292 (447)
                                                      ...-++||||++|+ ++....    .....++.+++.+|+.||+ .++
T Consensus        63 --------------------------------~~~~~lv~e~i~G~-~l~~~~----~~~~~~~~~l~~~l~~LH~-~~~  104 (170)
T cd05151          63 --------------------------------PETGVLITEFIEGS-ELLTED----FSDPENLEKIAKLLKKLHS-SPL  104 (170)
T ss_pred             --------------------------------CCCCeEEEEecCCC-cccccc----ccCHHHHHHHHHHHHHHhC-CCC
Confidence                                            12357999999965 665431    1224567899999999998 774


Q ss_pred             -----eeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceee
Q 013230          293 -----EHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRI  340 (447)
Q Consensus       293 -----iHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~  340 (447)
                           +|+|+||+||+++ ++                    .++++|||.+..
T Consensus       105 ~~~~~~HgD~~~~Nil~~-~~--------------------~~~liDf~~a~~  136 (170)
T cd05151         105 PDLVPCHNDLLPGNFLLD-DG--------------------RLWLIDWEYAGM  136 (170)
T ss_pred             CCceeecCCCCcCcEEEE-CC--------------------eEEEEecccccC
Confidence                 9999999999999 44                    699999998764

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.17  E-value=6e-10  Score=102.83  Aligned_cols=73  Identities=23%  Similarity=0.189  Sum_probs=57.5

Q ss_pred             eEEEEEEecCc----cchhhhhcCCHHHHHHHHHHHHHHHHHH-HHhCCeeeccCCCCCEEEecCCCccccccccCcccc
Q 013230          248 RYIVFVLQHGG----KDLESFVLLNINEARSLLVQVTAGLAVA-EAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMF  322 (447)
Q Consensus       248 ~~ivmE~~~gG----~~L~~~i~l~~~~~~~i~~Qil~gL~yl-H~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~  322 (447)
                      -+|||||+.++    ..|.+. .++...+..++.|++.+|..+ |+ .||||+||++.|||+..+               
T Consensus        99 ~~lvME~Ig~~~~~~~~Lkd~-~~~~~~~~~i~~~i~~~l~~l~H~-~glVHGDLs~~NIL~~~~---------------  161 (197)
T cd05146          99 HVLVMSFIGDDQVPAPKLKDA-KLNDEEMKNAYYQVLSMMKQLYKE-CNLVHADLSEYNMLWHDG---------------  161 (197)
T ss_pred             CEEEEEEcCCCCccchhhhcc-ccCHHHHHHHHHHHHHHHHHHHHh-CCeecCCCCHHHEEEECC---------------
Confidence            68999999753    122221 156667788899999999999 88 999999999999999754               


Q ss_pred             cccCCCcEEEeeccceeecCC
Q 013230          323 VRTFGLSVTIIDFTLSRINTG  343 (447)
Q Consensus       323 ~~~~~~~vkL~DFGla~~~~~  343 (447)
                            .+.|+|||.|.....
T Consensus       162 ------~v~iIDF~qav~~~h  176 (197)
T cd05146         162 ------KVWFIDVSQSVEPTH  176 (197)
T ss_pred             ------cEEEEECCCceeCCC
Confidence                  699999998765543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=1e-11  Score=126.36  Aligned_cols=163  Identities=19%  Similarity=0.203  Sum_probs=124.2

Q ss_pred             CCceEEEEEEecCccchhhhhc-------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCcccccccc
Q 013230          245 ENQRYIVFVLQHGGKDLESFVL-------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLD  317 (447)
Q Consensus       245 ~~~~~ivmE~~~gG~~L~~~i~-------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~  317 (447)
                      ...+||.|++|..+ +|.+++.       .+....+.++.|+..|+.|    .|.+|||+||.||....+.         
T Consensus       328 ~~~lyI~Mn~c~~~-tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y----k~~ihrdlkp~nif~~~d~---------  393 (516)
T KOG1033|consen  328 KVYLYIQMNLCEKE-TLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY----KGLIHRDLKPSNIFFSDDD---------  393 (516)
T ss_pred             ccchhhhhhhhhhh-hHHHHhhCCCcccccchhHHHHHHHhhccchhh----ccchhhhccccccccccch---------
Confidence            34689999999977 9999995       6778899999999999999    7999999999999999987         


Q ss_pred             CcccccccCCCcEEEeeccceeecCCCC-----------EEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCC-C
Q 013230          318 GKQMFVRTFGLSVTIIDFTLSRINTGED-----------IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGS-F  385 (447)
Q Consensus       318 ~~~~~~~~~~~~vkL~DFGla~~~~~~g-----------~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~-~  385 (447)
                                 .+||.|||+.......+           -+....||.||-..|..+..+.|||+ +|.+..+.|..+ .
T Consensus       394 -----------q~kIgDFgl~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIya-LGlil~EL~~~f~T  461 (516)
T KOG1033|consen  394 -----------QLKIGDFGLVTSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYA-LGLILAELLIQFST  461 (516)
T ss_pred             -----------hhhhhhhhheeecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhh-HHHHHHHHHHHhcc
Confidence                       79999999987765443           24556699999999999999999999 999999988733 3


Q ss_pred             CCChhHHHHHHHHHHhhccCCC-CCccchHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          386 PKTNVLWLVYLVDMLLLKKTFD-RSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       386 p~~~~~~~~~~~~~l~~~~~~~-~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                      ++........+.     ...+| ......++-.+|+..||...     ++.+.-.|+|.
T Consensus       462 ~~er~~t~~d~r-----~g~ip~~~~~d~p~e~~ll~~lls~~p~~RP~~~~~~~~~~~  515 (516)
T KOG1033|consen  462 QFERIATLTDIR-----DGIIPPEFLQDYPEEYTLLQQLLSPSPEERPSAIEVALHEFL  515 (516)
T ss_pred             HHHHHHhhhhhh-----cCCCChHHhhcCcHHHHHHHHhcCCCcccCchHHHHhhhhhc
Confidence            332221111111     12233 11223456778999999888     66666667664

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.99  E-value=6.3e-09  Score=93.47  Aligned_cols=148  Identities=15%  Similarity=0.135  Sum_probs=101.4

Q ss_pred             cceEEeccccceEEEEece----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeee
Q 013230          135 ENIVKVGEGTFGEAFLAGN----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      ..+..|-+|+=+.|+++..    ..||.=..++-.+..-..+-...+.++|+++|.++..+        -+|  ...++-
T Consensus        10 ~~l~likQGAEArv~~~~~~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~--------GI~--~P~l~~   79 (229)
T KOG3087|consen   10 DSLELIKQGAEARVPRGSFSGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRAL--------GIP--APRLIF   79 (229)
T ss_pred             CcceeeeccceeeEeeeccCCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHh--------CCC--CceEEE
Confidence            4678899999999999873    45664322221111112222346788999999998762        111  222222


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHHHH
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~gL~  284 (447)
                      +                                +...-.|+|||.+|-.++.+++.      ........++++|-..+.
T Consensus        80 ~--------------------------------D~~~~~i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~ig  127 (229)
T KOG3087|consen   80 I--------------------------------DTYGGQIYMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIG  127 (229)
T ss_pred             E--------------------------------ecCCCeEEEEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHH
Confidence            2                                12335789999996568888876      222333788999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT  342 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~  342 (447)
                      -||. .+|||+||..+|||+.+++.                 -+.+.++|||++....
T Consensus       128 klH~-ndiiHGDLTTSNill~~~~~-----------------~~~~~lIdfgls~~s~  167 (229)
T KOG3087|consen  128 KLHD-NDIIHGDLTTSNILLRSDGN-----------------QITPILIDFGLSSVSR  167 (229)
T ss_pred             Hhhh-CCeecccccccceEEecCCC-----------------cCceEEEeecchhccc
Confidence            9999 99999999999999999874                 1246899999987653

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.99  E-value=5e-09  Score=94.41  Aligned_cols=134  Identities=19%  Similarity=0.212  Sum_probs=92.5

Q ss_pred             EeccccceEEEEec----eeEEEEEecCCCccccccccc-chHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEEE
Q 013230          139 KVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQK-KSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKV  213 (447)
Q Consensus       139 ~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~-~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~~  213 (447)
                      .+++|+=+.++.+.    ++++|. ++.+..+....+++ ..++..+|++++.++...-      -+    ...++++  
T Consensus         3 ~i~~GAEa~i~~~~~~g~~av~K~-Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~G------V~----~P~v~dv--   69 (204)
T COG3642           3 LIKQGAEAIIYLTDFLGLPAVVKE-RIPKRYRHPELDEKLRRERTRREARILAKAREAG------VP----VPIVYDV--   69 (204)
T ss_pred             hhhCCcceeEEeeeccCcceEEEe-ecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcC------CC----CCeEEEE--
Confidence            47788888888772    555563 33322222222222 3467789999999987621      22    4455555  


Q ss_pred             EeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhcCCHHHHHHHHHHHHHHHHHHHHhCCee
Q 013230          214 CQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFE  293 (447)
Q Consensus       214 ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~l~~~~~~~i~~Qil~gL~ylH~~~~ii  293 (447)
                                                    +.+...|+|||.. |..|.+++.-.   .-.+++.+-.-+.-||. .|||
T Consensus        70 ------------------------------D~~~~~I~me~I~-G~~lkd~l~~~---~~~~~r~vG~~vg~lH~-~giv  114 (204)
T COG3642          70 ------------------------------DPDNGLIVMEYIE-GELLKDALEEA---RPDLLREVGRLVGKLHK-AGIV  114 (204)
T ss_pred             ------------------------------cCCCCEEEEEEeC-ChhHHHHHHhc---chHHHHHHHHHHHHHHh-cCee
Confidence                                          1455789999998 56888777522   23455666666788999 9999


Q ss_pred             eccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeec
Q 013230          294 HRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRIN  341 (447)
Q Consensus       294 HrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~  341 (447)
                      |.||.+.||++...                     .+.++||||+...
T Consensus       115 HGDLTtsNiIl~~~---------------------~i~~IDfGLg~~s  141 (204)
T COG3642         115 HGDLTTSNIILSGG---------------------RIYFIDFGLGEFS  141 (204)
T ss_pred             cCCCccceEEEeCC---------------------cEEEEECCccccc
Confidence            99999999999998                     4999999998754

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.98  E-value=6.1e-09  Score=97.17  Aligned_cols=139  Identities=18%  Similarity=0.216  Sum_probs=97.4

Q ss_pred             eEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeE
Q 013230          137 IVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEI  211 (447)
Q Consensus       137 ~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~  211 (447)
                      ++.||.|.++.||++.     .+++|.......       ......+.+|+.+++.+.+. +     .+    +.+++.+
T Consensus         3 ~~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~-------~~~~~~~~~E~~~~~~l~~~-~-----~~----vp~~~~~   65 (223)
T cd05154           3 VRQLSGGQSNLTYLLTAGGGRRLVLRRPPPGAL-------LPSAHDVAREYRVLRALAGT-G-----VP----VPKVLAL   65 (223)
T ss_pred             ceecCCCccceEEEEEecCCcceEEEeCCCccc-------CcccccHHHHHHHHHHhhCC-C-----CC----CCCEEEE
Confidence            3779999999999975     478887653321       11335679999999999761 1     11    3344433


Q ss_pred             EEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHHHHHH
Q 013230          212 KVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLAVAEA  288 (447)
Q Consensus       212 ~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~ylH~  288 (447)
                      ...                           ....+..|++|||+.|+ ++...+.   ++......++.+++.+|..||+
T Consensus        66 ~~~---------------------------~~~~~~~~~v~e~i~G~-~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~  117 (223)
T cd05154          66 CED---------------------------PSVLGTPFYVMERVDGR-VLRDRLLRPELSPEERRALARALADTLAALHS  117 (223)
T ss_pred             CCC---------------------------CCccCCceEEEEEeCCE-ecCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            100                           00013568999999865 7777653   6777888888888888888884


Q ss_pred             -------------------------------------------------------hCCeeeccCCCCCEEEec--CCCcc
Q 013230          289 -------------------------------------------------------AYEFEHRDLHWGNVLLSR--NDSVT  311 (447)
Q Consensus       289 -------------------------------------------------------~~~iiHrDLKpeNILl~~--~~~~~  311 (447)
                                                                             ...++|+|++|.|||++.  ++   
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~---  194 (223)
T cd05154         118 VDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAMERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPR---  194 (223)
T ss_pred             CChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCc---
Confidence                                                                   135699999999999998  43   


Q ss_pred             ccccccCcccccccCCCcEEEeeccceee
Q 013230          312 MNFLLDGKQMFVRTFGLSVTIIDFTLSRI  340 (447)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~vkL~DFGla~~  340 (447)
                                       .+.|+||+.+..
T Consensus       195 -----------------~~~iID~e~~~~  206 (223)
T cd05154         195 -----------------VVAVLDWELATL  206 (223)
T ss_pred             -----------------EEEEEecccccc
Confidence                             589999998765

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.97  E-value=1.5e-09  Score=112.30  Aligned_cols=233  Identities=17%  Similarity=0.128  Sum_probs=150.0

Q ss_pred             CcceEEecc--ccceEEEEece--------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccc
Q 013230          134 PENIVKVGE--GTFGEAFLAGN--------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACT  203 (447)
Q Consensus       134 ~~~~~~LG~--G~fG~V~~a~~--------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~  203 (447)
                      +...+.+|.  |.+|.||.++.        +|+|.-.+...      .......-++|+.-.+.++           .|+
T Consensus       116 ~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s------~p~~~~~k~~~~~s~~~i~-----------~~~  178 (524)
T KOG0601|consen  116 FPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFS------PPLDSKRKLREFLSHHKID-----------SHE  178 (524)
T ss_pred             cccccccccCCCCCceeecccCCcccCCcccccccccCCCC------CccccccccchhhcccccC-----------ccc
Confidence            367789999  99999998873        77775222211      1111122355555544443           344


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHH
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQ  278 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Q  278 (447)
                      +.++.+..|.                              ..+.+|+-.|+|.  .+|..+..     ++...++..+.+
T Consensus       179 ~~v~~~~~~e------------------------------~~~~lfiqtE~~~--~sl~~~~~~~~~~~p~~~l~~~~~~  226 (524)
T KOG0601|consen  179 NPVRDSPAWE------------------------------GSGILFIQTELCG--ESLQSYCHTPCNFLPDNLLWNSLRD  226 (524)
T ss_pred             cccccCcccc------------------------------cCCcceeeecccc--chhHHhhhcccccCCchhhhhHHhh
Confidence            5777666633                              3567999999996  58888765     899999999999


Q ss_pred             HHH----HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE------EE
Q 013230          279 VTA----GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI------FF  348 (447)
Q Consensus       279 il~----gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~------i~  348 (447)
                      ...    ||.++|. .+++|-|+||+||++..+..                   ..+++|||+.......+.      .+
T Consensus       227 ~~~~~~~al~~~hs-~~~~~~~~kp~~i~~~~~~~-------------------s~~~~df~~v~~i~~~~~~~~~~~~~  286 (524)
T KOG0601|consen  227 WLSRDVTALSHLHS-NNIVHDDLKPANIFTTSDWT-------------------SCKLTDFGLVSKISDGNFSSVFKVSK  286 (524)
T ss_pred             hhhcccccccccCC-Ccccccccchhheecccccc-------------------eeecCCcceeEEccCCccccceeeee
Confidence            999    9999999 99999999999999999842                   678888887766554421      10


Q ss_pred             E----ecCCCCCCCCCCCCCchHHHHHhhccCCcccccCC-CCCCh--hHHHHHHHHHHhhccCCCCCccchHHHHHHHH
Q 013230          349 L----DLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGS-FPKTN--VLWLVYLVDMLLLKKTFDRSSKDERDLRSLKK  421 (447)
Q Consensus       349 ~----~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~-~p~~~--~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~  421 (447)
                      -    ..|+++++..+ ......|||+ +|.+..+...+. .|-.+  ..|.... ...+....   ....+.+++..+.
T Consensus       287 r~~~~~~Y~~ke~~~~-l~~~~~di~s-l~ev~l~~~l~~~~~~~g~~~~W~~~r-~~~ip~e~---~~~~s~~l~~~~~  360 (524)
T KOG0601|consen  287 RPEGDCIYAAKELLNG-LATFASDIFS-LGEVILEAILGSHLPSVGKNSSWSQLR-QGYIPLEF---CEGGSSSLRSVTS  360 (524)
T ss_pred             cCCCCceEeChhhhcc-ccchHhhhcc-hhhhhHhhHhhcccccCCCCCCccccc-cccCchhh---hcCcchhhhhHHH
Confidence            0    12568888776 3334447887 554433322222 22211  2232211 00011111   1234667777899


Q ss_pred             Hhcccc-----CHHHHHcCCCCCCC
Q 013230          422 RLDKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       422 ~mL~~d-----sa~elL~HPff~~~  441 (447)
                      .|+..+     +++.++.|++....
T Consensus       361 ~~~d~~~~~~~~~q~~~~l~~i~s~  385 (524)
T KOG0601|consen  361 QMLDEDPRLRLTAQILTALNVIHSK  385 (524)
T ss_pred             HhcCcchhhhhHHHHHhccccccch
Confidence            999988     99999999998743

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.95  E-value=6.3e-10  Score=115.14  Aligned_cols=232  Identities=19%  Similarity=0.116  Sum_probs=149.9

Q ss_pred             CCcceEEeccccceEEEEec-------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccce
Q 013230          133 DPENIVKVGEGTFGEAFLAG-------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~i  205 (447)
                      +|..+..||.|.|+.|+.+.       .+++|.+.....      ........+.|+.+...+.-           |.++
T Consensus       266 df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~------~~~~di~sl~ev~l~~~l~~-----------~~~~  328 (524)
T KOG0601|consen  266 DFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLA------TFASDIFSLGEVILEAILGS-----------HLPS  328 (524)
T ss_pred             CcceeEEccCCccccceeeeecCCCCceEeChhhhcccc------chHhhhcchhhhhHhhHhhc-----------cccc
Confidence            57899999999999999864       267775543211      00011123556666655543           3337


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTA  281 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~  281 (447)
                      +.++..|..                              ..+.||-.|||++| ++...+.    +.+...+.+..|++.
T Consensus       329 ~g~~~~W~~------------------------------~r~~~ip~e~~~~~-s~~l~~~~~~~~d~~~~~~~~~q~~~  377 (524)
T KOG0601|consen  329 VGKNSSWSQ------------------------------LRQGYIPLEFCEGG-SSSLRSVTSQMLDEDPRLRLTAQILT  377 (524)
T ss_pred             CCCCCCccc------------------------------cccccCchhhhcCc-chhhhhHHHHhcCcchhhhhHHHHHh
Confidence            777766433                              45578999999977 5544333    899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEEEEec--CC--CCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDL--SQ--DPEL  357 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i~~~~--~~--~pel  357 (447)
                      |+.++|+ ..++|+|+||+||++..++.                   ..++.|||+.......-.++..+  +.  ++.+
T Consensus       378 ~l~~i~s-~~~~~~d~~psni~i~~~~~-------------------~~~~~~~~~~t~~~~~~~~~~~~~r~~p~~~~~  437 (524)
T KOG0601|consen  378 ALNVIHS-KLFVHLDVKPSNILISNDGF-------------------FSKLGDFGCWTRLAFSSGVFHHIDRLYPIAEIL  437 (524)
T ss_pred             ccccccc-hhhhcccccccceeeccchh-------------------hhhccccccccccceecccccccccccccchhh
Confidence            9999999 99999999999999999742                   68899999886432221112111  22  2333


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCC-CCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHH
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGS-FPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKE  431 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~-~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~e  431 (447)
                      -.......++++++ ++....+...+. ++.....|....      ....+.......++..+.+.++..+     .+.+
T Consensus       438 ~e~~~~~~~~~~~s-l~~~~~e~~~~~~ls~~~~~~~~i~------~~~~p~~~~~~~~~q~~~kv~~~~~~~~~~l~~~  510 (524)
T KOG0601|consen  438 LEDYPHLSKADIFS-LGLSVDEAITGSPLSESGVQSLTIR------SGDTPNLPGLKLQLQVLLKVMINPDRKRRPSAVE  510 (524)
T ss_pred             cccccccccccccc-ccccccccccCcccCcccccceeee------cccccCCCchHHhhhhhhhhhcCCccccchhhhh
Confidence            33444455668898 776555554443 444333332211      1233443445588888999998888     7777


Q ss_pred             HHcCCCCC
Q 013230          432 AIFDPFFS  439 (447)
Q Consensus       432 lL~HPff~  439 (447)
                      +..|+=|.
T Consensus       511 l~~~~~~~  518 (524)
T KOG0601|consen  511 LSLHSEFY  518 (524)
T ss_pred             hcccchhh
Confidence            77776554

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=98.89  E-value=8.4e-10  Score=103.92  Aligned_cols=223  Identities=13%  Similarity=0.114  Sum_probs=164.4

Q ss_pred             cceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeee
Q 013230          135 ENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      .++.+|.+...|+.|+|+    +++.|++....      ........+..|.--|+-+.|        ||    |..+++
T Consensus       193 nl~tkl~e~hsgelwrgrwqgndivakil~vr~------~t~risrdfneefp~lrifsh--------pn----ilpvlg  254 (448)
T KOG0195|consen  193 NLITKLAESHSGELWRGRWQGNDIVAKILNVRE------VTARISRDFNEEFPALRIFSH--------PN----ILPVLG  254 (448)
T ss_pred             hhhhhhccCCCcccccccccCcchhhhhhhhhh------cchhhcchhhhhCcceeeecC--------Cc----hhhhhh
Confidence            667889999999999998    58888877543      233345678888888888888        88    888887


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHHHH
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~gL~  284 (447)
                      .+                              ...-.+.++..|++-| +|+.++.      .+..++.+++.+++.|++
T Consensus       255 ac------------------------------nsppnlv~isq~mp~g-slynvlhe~t~vvvd~sqav~faldiargma  303 (448)
T KOG0195|consen  255 AC------------------------------NSPPNLVIISQYMPFG-SLYNVLHEQTSVVVDHSQAVRFALDIARGMA  303 (448)
T ss_pred             hc------------------------------cCCCCceEeeeeccch-HHHHHHhcCccEEEecchHHHHHHHHHhhHH
Confidence            72                              2245588999999999 9999886      788999999999999999


Q ss_pred             HHHHhCCeee-ccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEEEEecCCCCCCCCCCCC
Q 013230          285 VAEAAYEFEH-RDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKG  363 (447)
Q Consensus       285 ylH~~~~iiH-rDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i~~~~~~~pelf~g~~~  363 (447)
                      |||+--.++- --|....++|+.+-.                  ..+..+|--+|.  ...|-+|...+++||..+....
T Consensus       304 flhslep~ipr~~lns~hvmidedlt------------------arismad~kfsf--qe~gr~y~pawmspealqrkpe  363 (448)
T KOG0195|consen  304 FLHSLEPMIPRFYLNSKHVMIDEDLT------------------ARISMADTKFSF--QEVGRAYSPAWMSPEALQRKPE  363 (448)
T ss_pred             HHhhcchhhhhhhcccceEEecchhh------------------hheecccceeee--eccccccCcccCCHHHHhcCch
Confidence            9998223332 346677788887741                  134445544433  3446778888999998876555


Q ss_pred             Cc---hHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc
Q 013230          364 DK---QFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       364 ~~---~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d  427 (447)
                      +.   ..|+|+ +.+...+.-+...||.....++.--++.+..-....+...++....|++-|+.-|
T Consensus       364 d~n~raadmws-faillwel~trevpfadlspmecgmkialeglrv~ippgis~hm~klm~icmned  429 (448)
T KOG0195|consen  364 DLNIRAADMWS-FAILLWELNTREVPFADLSPMECGMKIALEGLRVHIPPGISRHMNKLMNICMNED  429 (448)
T ss_pred             hcchhhhhHHH-HHHHHHHhhccccccccCCchhhhhhhhhccccccCCCCccHHHHHHHHHHhcCC
Confidence            53   349999 7777888888888887765555545555545556667789999999999999887

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.82  E-value=3.4e-08  Score=90.74  Aligned_cols=74  Identities=24%  Similarity=0.249  Sum_probs=54.3

Q ss_pred             eEEEEEEec-Cccchhhhhc--CCHHHHHHHHHHHHHHHHHH-HHhCCeeeccCCCCCEEEecCCCccccccccCccccc
Q 013230          248 RYIVFVLQH-GGKDLESFVL--LNINEARSLLVQVTAGLAVA-EAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFV  323 (447)
Q Consensus       248 ~~ivmE~~~-gG~~L~~~i~--l~~~~~~~i~~Qil~gL~yl-H~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~  323 (447)
                      -+|||||+. +|..+..+..  ++......++.+++..+..+ |+ .||+|+||.+.|||++.+                
T Consensus        81 ~~ivME~I~~~G~~~~~l~~~~~~~~~~~~~~~~il~~~~~~~~~-~givHGDLs~~NIlv~~~----------------  143 (188)
T PF01163_consen   81 NVIVMEYIGEDGVPLPRLKDVDLSPEEPKELLEEILEEIIKMLHK-AGIVHGDLSEYNILVDDG----------------  143 (188)
T ss_dssp             TEEEEE--EETTEEGGCHHHCGGGGSTHHHHHHHHHHHHHHHHHC-TTEEESS-STTSEEEETT----------------
T ss_pred             CEEEEEecCCCccchhhHHhccccchhHHHHHHHHHHHHHHHHHh-cCceecCCChhhEEeecc----------------
Confidence            579999998 3557766655  33567788889999877765 68 999999999999999987                


Q ss_pred             ccCCCcEEEeeccceeecCC
Q 013230          324 RTFGLSVTIIDFTLSRINTG  343 (447)
Q Consensus       324 ~~~~~~vkL~DFGla~~~~~  343 (447)
                           .+.|+|||.|.....
T Consensus       144 -----~~~iIDf~qav~~~~  158 (188)
T PF01163_consen  144 -----KVYIIDFGQAVDSSH  158 (188)
T ss_dssp             -----CEEE--GTTEEETTS
T ss_pred             -----eEEEEecCcceecCC
Confidence                 499999998766543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=98.75  E-value=1.5e-09  Score=118.18  Aligned_cols=177  Identities=19%  Similarity=0.164  Sum_probs=135.8

Q ss_pred             CCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcc
Q 013230          245 ENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQ  320 (447)
Q Consensus       245 ~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~  320 (447)
                      ....+++|+|..+| +|...+.    .+..-++.++..+..+++|||. ..++|||+||.|+|+..++            
T Consensus       876 rsP~~L~~~~~~~~-~~~Skl~~~~~~saepaRs~i~~~vqs~e~L~s-~~r~h~~~~p~~~l~~~~g------------  941 (1205)
T KOG0606|consen  876 RSPLPLVGHYLNGG-DLPSKLHNSGCLSAEPARSPILERVQSLESLHS-SLRKHRDLKPDSLLIAYDG------------  941 (1205)
T ss_pred             CCCcchhhHHhccC-CchhhhhcCCCcccccccchhHHHHhhhhcccc-chhhcccccccchhhcccC------------
Confidence            34589999999876 9998876    6777899999999999999999 7799999999999999988            


Q ss_pred             cccccCCCcEEEeeccceeecC-C-----------------------------------CCEEEEecCCCCCCCCCCCCC
Q 013230          321 MFVRTFGLSVTIIDFTLSRINT-G-----------------------------------EDIFFLDLSQDPELFSGPKGD  364 (447)
Q Consensus       321 ~~~~~~~~~vkL~DFGla~~~~-~-----------------------------------~g~i~~~~~~~pelf~g~~~~  364 (447)
                              +.+++|||+..... -                                   ...+...-|.+|+...|....
T Consensus       942 --------h~~l~~~~t~~~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hg 1013 (1205)
T KOG0606|consen  942 --------HRPLTDFGTLSKVGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHG 1013 (1205)
T ss_pred             --------CcccCccccccccccccCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCC
Confidence                    67777777322110 0                                   011223337788888887777


Q ss_pred             chHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC-CccchHHHHHHHHHhcccc--------CHHHHHcC
Q 013230          365 KQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR-SSKDERDLRSLKKRLDKYN--------SAKEAIFD  435 (447)
Q Consensus       365 ~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~-~~~~s~~l~dLl~~mL~~d--------sa~elL~H  435 (447)
                      ...++|+ .|....+...|..|+....-.+....++.....++. +...+.++++++.++|..+        -+.++-.|
T Consensus      1014 s~ad~~~-~g~~l~e~l~g~pp~na~tpq~~f~ni~~~~~~~p~g~~~~s~~aq~~~~~ll~~~~~qr~~a~~~~e~k~~ 1092 (1205)
T KOG0606|consen 1014 SAADWWS-SGVCLFEVLTGIPPFNAETPQQIFENILNRDIPWPEGPEEGSYEAQDLINRLLTEEPTQRLGAKGAAEVKGH 1092 (1205)
T ss_pred             Ccchhhh-hhhhhhhhhcCCCCCCCcchhhhhhccccCCCCCCCCccccChhhhhhhhhhhccCchhccCcccccccccC
Confidence            7779888 999999999999888776555555555533334443 5568999999999999998        45589999


Q ss_pred             CCCCCCCCC
Q 013230          436 PFFSDLIVD  444 (447)
Q Consensus       436 Pff~~~~~~  444 (447)
                      |||++..++
T Consensus      1093 ~~~~~~~~~ 1101 (1205)
T KOG0606|consen 1093 PFFQDVDWE 1101 (1205)
T ss_pred             CccCCCCcc
Confidence            999988654

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=98.65  E-value=4.8e-08  Score=101.10  Aligned_cols=161  Identities=18%  Similarity=0.086  Sum_probs=112.1

Q ss_pred             CCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCc
Q 013230          245 ENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGK  319 (447)
Q Consensus       245 ~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~  319 (447)
                      ...+++|-+||.-| +|.+.+.     ++.-....++++|+.||+|+|.-....|.-|+..|.+++...           
T Consensus        19 ~~~~~~i~~~c~rG-sl~D~i~~~~~~~d~~F~~s~~rdi~~Gl~ylh~s~i~~hg~l~s~nClvd~~w-----------   86 (484)
T KOG1023|consen   19 GPEMIVIWEYCSRG-SLLDILSNEDIKLDYFFILSFIRDISKGLAYLHNSPIGYHGALKSSNCLVDSRW-----------   86 (484)
T ss_pred             CCceEEEEeeecCc-cHHhHHhccccCccHHHHHHHHHHHHHHHHHHhcCcceeeeeeccccceeeeeE-----------
Confidence            46689999999999 9998876     777778889999999999999724449999999999999996           


Q ss_pred             ccccccCCCcEEEeeccceeecCCC-----C--EEEEecCCCCCCCCCCCCC------ch-HHHHHhhccCCcccccCCC
Q 013230          320 QMFVRTFGLSVTIIDFTLSRINTGE-----D--IFFLDLSQDPELFSGPKGD------KQ-FDTYRKMKKVTEDQWEGSF  385 (447)
Q Consensus       320 ~~~~~~~~~~vkL~DFGla~~~~~~-----g--~i~~~~~~~pelf~g~~~~------~~-~di~s~lg~~~~~~~~~~~  385 (447)
                               .+||+|||+.......     .  .....++++|++..+....      .+ .|+|+ +|.+.++......
T Consensus        87 ---------~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs-~~ii~~ei~~r~~  156 (484)
T KOG1023|consen   87 ---------VLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYS-FGIIMYEILFRSG  156 (484)
T ss_pred             ---------EEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeeh-HHHHHHHHHhccC
Confidence                     8999999998776421     0  0111237888888664222      23 39999 8889888888877


Q ss_pred             CCChhHHH---HHHHHHHhh-ccCCCCC-----ccchHHHHHHHHHhcccc
Q 013230          386 PKTNVLWL---VYLVDMLLL-KKTFDRS-----SKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       386 p~~~~~~~---~~~~~~l~~-~~~~~~~-----~~~s~~l~dLl~~mL~~d  427 (447)
                      |+......   ..+...+.. ......|     ....+++..+++.|...+
T Consensus       157 ~~~~~~~~~~~~eii~~~~~~~~~~~rP~i~~~~e~~~~l~~l~~~cw~e~  207 (484)
T KOG1023|consen  157 PFDLRNLVEDPDEIILRVKKGGSNPFRPSIELLNELPPELLLLVARCWEEI  207 (484)
T ss_pred             ccccccccCChHHHHHHHHhcCCCCcCcchhhhhhcchHHHHHHHHhcccC
Confidence            77542110   111111111 1111111     134557899999998877

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.57  E-value=4.6e-07  Score=88.00  Aligned_cols=81  Identities=21%  Similarity=0.194  Sum_probs=62.7

Q ss_pred             CceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCc
Q 013230          246 NQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGK  319 (447)
Q Consensus       246 ~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~  319 (447)
                      ..-+||||++.+-.+|.+++.      .+......++.++...+.-||. .||+|+|+++.|||++.+..          
T Consensus       108 ~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH~-~Gi~HgDL~~~NiLl~~~~~----------  176 (268)
T PRK15123        108 RTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMHA-AGINHRDCYICHFLLHLPFP----------  176 (268)
T ss_pred             ceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHH-CcCccCCCChhhEEEecccc----------
Confidence            347899999985458888864      4556778999999999999999 99999999999999986200          


Q ss_pred             ccccccCCCcEEEeeccceee
Q 013230          320 QMFVRTFGLSVTIIDFTLSRI  340 (447)
Q Consensus       320 ~~~~~~~~~~vkL~DFGla~~  340 (447)
                         ....+..+.|+||+.++.
T Consensus       177 ---~~~~~~~~~LIDl~r~~~  194 (268)
T PRK15123        177 ---GREEDLKLSVIDLHRAQI  194 (268)
T ss_pred             ---CCCCCceEEEEECCcccc
Confidence               000013799999997753

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.57  E-value=1e-06  Score=82.25  Aligned_cols=77  Identities=23%  Similarity=0.347  Sum_probs=65.9

Q ss_pred             CceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCccc
Q 013230          246 NQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQM  321 (447)
Q Consensus       246 ~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~  321 (447)
                      ...++|+|++++-.+|.+++.    .+......++.++...++-||+ .||+|+|++|.|||++.++.            
T Consensus        90 ~~s~lite~l~~~~~L~~~~~~~~~~~~~~~~~ll~~l~~~i~~lH~-~gi~H~Dl~~~NILv~~~~~------------  156 (206)
T PF06293_consen   90 YRSYLITEALPGAQDLRDLLQQWEQLDPSQRRELLRALARLIAKLHD-AGIYHGDLNPSNILVDPDDG------------  156 (206)
T ss_pred             eeEEEEEEeCCCcccHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH-CcCCCCCCCcccEEEeCCCC------------
Confidence            346899999996678999876    4677888999999999999999 99999999999999999851            


Q ss_pred             ccccCCCcEEEeeccceee
Q 013230          322 FVRTFGLSVTIIDFTLSRI  340 (447)
Q Consensus       322 ~~~~~~~~vkL~DFGla~~  340 (447)
                           ...+.++||+.++.
T Consensus       157 -----~~~~~lIDld~~~~  170 (206)
T PF06293_consen  157 -----QYRFYLIDLDRMRF  170 (206)
T ss_pred             -----ceeEEEEcchhcee
Confidence                 23699999997665

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.39  E-value=5.1e-06  Score=78.76  Aligned_cols=46  Identities=20%  Similarity=0.194  Sum_probs=33.6

Q ss_pred             cceEEeccccceEEEEec--eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccc
Q 013230          135 ENIVKVGEGTFGEAFLAG--NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNH  190 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~--~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h  190 (447)
                      .....||+|..+.||++.  .+++|..+..          .....+.+|.++++.+..
T Consensus         4 ~~~~~i~~G~t~~~y~~~~~~~VlR~~~~~----------~~~~~i~~E~~~l~~l~~   51 (226)
T TIGR02172         4 SDWTQTGEGGNGESYTHKTGKWMLKLYNPG----------FDKETIKREFDASRKVFS   51 (226)
T ss_pred             hHheeecCCCCcceeEecCCCEEEEeCCCC----------CCHHHHHHHHHHHHHHHH
Confidence            345789999999999953  5677776522          123457899999999875

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.36  E-value=6.2e-06  Score=84.66  Aligned_cols=115  Identities=18%  Similarity=0.138  Sum_probs=88.1

Q ss_pred             EEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEEEEeCCCch
Q 013230          147 EAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDA  220 (447)
Q Consensus       147 ~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~~~~g~~~~  220 (447)
                      +-|+|.      .|++|.+...+.        ........=++.++++.|        +|    ||.+.++|.+.     
T Consensus       291 Ttyk~~s~~DG~~YvLkRlhg~r~--------~~~nk~t~lve~wkkl~h--------~N----vV~frevf~t~-----  345 (655)
T KOG3741|consen  291 TTYKATSNVDGNAYVLKRLHGDRD--------QSTNKDTSLVEAWKKLCH--------TN----VVPFREVFLTY-----  345 (655)
T ss_pred             eeEeeeeccCCceeeeeeeccccc--------cCcccchHHHHHHHHhcc--------Cc----eeehhhhhhhh-----
Confidence            456664      388888743322        111112334678888888        88    99999998642     


Q ss_pred             HHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------------------CCHHHHHHHHHHHHH
Q 013230          221 ALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------------------LNINEARSLLVQVTA  281 (447)
Q Consensus       221 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------------------l~~~~~~~i~~Qil~  281 (447)
                                           -|.+..+++|++|.++-.+|.++--                   .++..+|.|+.|+..
T Consensus       346 ---------------------tF~D~SlvlvYDYyP~s~TL~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLta  404 (655)
T KOG3741|consen  346 ---------------------TFGDLSLVLVYDYYPSSPTLYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTA  404 (655)
T ss_pred             ---------------------ccCcceEEEEEecCCCCchHHHHHccCCccccccccccccCCCCchHHHHHHHHHHHHH
Confidence                                 2446789999999987668877532                   788999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRND  308 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~  308 (447)
                      ||.++|+ .|+.-+-|-|.+||+..+.
T Consensus       405 aL~sIHs-sGLAck~L~~~kIlv~G~~  430 (655)
T KOG3741|consen  405 ALYSIHS-SGLACKTLDLKKILVTGKM  430 (655)
T ss_pred             HHHHHHh-cCceeecccHhHeEeeCcc
Confidence            9999999 9999999999999999985

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.36  E-value=1.1e-06  Score=92.48  Aligned_cols=161  Identities=19%  Similarity=0.244  Sum_probs=95.8

Q ss_pred             chhhhhhccCCCcceEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCC
Q 013230          123 KLLDLFSKYSDPENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGD  197 (447)
Q Consensus       123 ~~~~~~~~y~~~~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~  197 (447)
                      ++.+.|.++.    -+.|+.++-|+||+|+     .||||+.+..           ..+.+..-+.+|+.+-..      
T Consensus       120 ~iee~F~eF~----~~PiAsASIaQVH~A~L~sG~~VAVKVqrPg-----------i~~~i~~DL~il~~~a~~------  178 (517)
T COG0661         120 PIEELFSEFE----PEPIASASIAQVHRAVLKSGEEVAVKVQRPG-----------IRERIEADLKLLRRLARL------  178 (517)
T ss_pred             CHHHHHHHcC----CCchhhhhHhhheeEEecCCCEEEEEecCCC-----------hHHHHHHHHHHHHHHHHH------
Confidence            5667777763    2789999999999997     5999987643           223445555555554321      


Q ss_pred             CCCcccceeeeeeEEEEeC--CCchHHHHHhhhc-------cc------------ccCCCCCCCCCCCC--CceEEEEEE
Q 013230          198 TLNACTTFVEMFEIKVCQG--PYDAALIQAWEDW-------DD------------KHCSENDNPKEFPE--NQRYIVFVL  254 (447)
Q Consensus       198 ~~n~~~~iv~l~~~~~~~g--~~~~~l~~~~~~~-------~~------------~~~~~~~~~~~~~~--~~~~ivmE~  254 (447)
                              ++   .+.-.+  -.+.+.+..+...       ..            ++...---|+++.+  +.-.++|||
T Consensus       179 --------~~---~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~  247 (517)
T COG0661         179 --------IK---RLPPGGRRLDLVEVVDEFEKRLREELDYRREAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEW  247 (517)
T ss_pred             --------HH---HcCCccccCChHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEe
Confidence                    11   000000  1112222222221       00            00000011333333  557899999


Q ss_pred             ecCccchhhhhc-----CC-----HHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccc
Q 013230          255 QHGGKDLESFVL-----LN-----INEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVR  324 (447)
Q Consensus       255 ~~gG~~L~~~i~-----l~-----~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~  324 (447)
                      ++ |..+.++..     ++     ...++.++.|++.        .|++|.|.||+||++..++                
T Consensus       248 i~-Gi~i~d~~~l~~~g~d~k~ia~~~~~~f~~q~~~--------dgffHaDpHpGNi~v~~~g----------------  302 (517)
T COG0661         248 ID-GIKISDIAALKSAGIDRKELAELLVRAFLRQLLR--------DGFFHADPHPGNILVRSDG----------------  302 (517)
T ss_pred             eC-CEecccHHHHHhcCCCHHHHHHHHHHHHHHHHHh--------cCccccCCCccceEEecCC----------------
Confidence            98 557776632     33     3444445555543        8999999999999999998                


Q ss_pred             cCCCcEEEeeccceeecCCC
Q 013230          325 TFGLSVTIIDFTLSRINTGE  344 (447)
Q Consensus       325 ~~~~~vkL~DFGla~~~~~~  344 (447)
                          .+.+.|||+.......
T Consensus       303 ----~i~~lDfGi~g~l~~~  318 (517)
T COG0661         303 ----RIVLLDFGIVGRLDPK  318 (517)
T ss_pred             ----cEEEEcCcceecCCHH
Confidence                7999999998776554

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.35  E-value=7.3e-06  Score=76.62  Aligned_cols=67  Identities=24%  Similarity=0.337  Sum_probs=53.5

Q ss_pred             ceEEEEEEecCccchhhhhcCCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccC
Q 013230          247 QRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTF  326 (447)
Q Consensus       247 ~~~ivmE~~~gG~~L~~~i~l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~  326 (447)
                      ..+++|||++| ..|.++..+++.    +...|..++.-+|+ .|+.|+|++|+|+++..+                   
T Consensus       117 ~~~ll~EYIeG-~~l~d~~~i~e~----~~~ki~~~ikqlH~-~G~~HGD~hpgNFlv~~~-------------------  171 (229)
T PF06176_consen  117 SYVLLMEYIEG-VELNDIEDIDED----LAEKIVEAIKQLHK-HGFYHGDPHPGNFLVSNN-------------------  171 (229)
T ss_pred             EEEEEEEEecC-eecccchhcCHH----HHHHHHHHHHHHHH-cCCccCCCCcCcEEEECC-------------------
Confidence            35689999995 577776555543    34556678899999 999999999999999976                   


Q ss_pred             CCcEEEeeccceee
Q 013230          327 GLSVTIIDFTLSRI  340 (447)
Q Consensus       327 ~~~vkL~DFGla~~  340 (447)
                        .++++||+..+.
T Consensus       172 --~i~iID~~~k~~  183 (229)
T PF06176_consen  172 --GIRIIDTQGKRM  183 (229)
T ss_pred             --cEEEEECccccc
Confidence              499999986654

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=98.26  E-value=4.1e-06  Score=88.35  Aligned_cols=105  Identities=20%  Similarity=0.187  Sum_probs=89.3

Q ss_pred             hHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEE
Q 013230          175 SEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVL  254 (447)
Q Consensus       175 ~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~  254 (447)
                      .+.+.+-+.-|+.|+|        ||    |+++++.+..                              +..+|||.|-
T Consensus        53 ~~~~~~A~k~lKtlRH--------P~----Il~yL~t~e~------------------------------~~~~ylvTEr   90 (690)
T KOG1243|consen   53 TELAKRAVKRLKTLRH--------PN----ILSYLDTTEE------------------------------EGTLYLVTER   90 (690)
T ss_pred             hHHHHHHHHHhhhccC--------ch----hhhhhhhhcc------------------------------cCceEEEeec
Confidence            3556777788888888        88    9999998543                              5679999999


Q ss_pred             ecCccchhhhhc-CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEe
Q 013230          255 QHGGKDLESFVL-LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTII  333 (447)
Q Consensus       255 ~~gG~~L~~~i~-l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~  333 (447)
                      +.   .|..+++ +....+...++||+.||.|||..++++|.+|--.-|+++..|                    .-||+
T Consensus        91 V~---Pl~~~lk~l~~~~v~~Gl~qIl~AL~FL~~d~~lvHgNv~~~SVfVn~~G--------------------eWkLg  147 (690)
T KOG1243|consen   91 VR---PLETVLKELGKEEVCLGLFQILAALSFLNDDCNLVHGNVCKDSVFVNESG--------------------EWKLG  147 (690)
T ss_pred             cc---cHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCCeeeccEeeeeEEEcCCC--------------------cEEEe
Confidence            94   8888877 888888999999999999998559999999999999999998                    79999


Q ss_pred             eccceeecCCC
Q 013230          334 DFTLSRINTGE  344 (447)
Q Consensus       334 DFGla~~~~~~  344 (447)
                      +|-++......
T Consensus       148 gle~v~~~~~~  158 (690)
T KOG1243|consen  148 GLELVSKASGF  158 (690)
T ss_pred             eeEEEeccccC
Confidence            99887665443

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.18  E-value=9.4e-06  Score=77.63  Aligned_cols=137  Identities=16%  Similarity=0.163  Sum_probs=92.7

Q ss_pred             cceEEeccccceEEEEece-----eEEEEEecCCCccc----c--------ccc--ccchHHHHHHHHHHHhccccccCC
Q 013230          135 ENIVKVGEGTFGEAFLAGN-----TVCKVVPIDGDLKV----N--------GEA--QKKSEELLEEVVLSWTLNHLRRNE  195 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~-----vAiK~i~~~~~~~~----~--------~~~--~~~~~~~~~Ei~il~~L~h~~~~~  195 (447)
                      .+..+||-|-=|.||.|.+     +|+|.-+.....-.    +        ...  .-....+.+|..+|.+|...-   
T Consensus        94 ~iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G---  170 (304)
T COG0478          94 AIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEG---  170 (304)
T ss_pred             hhccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcC---
Confidence            5678999999999999973     88986544211000    0        000  011345788999999986510   


Q ss_pred             CCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhcCCHHHHHHH
Q 013230          196 GDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSL  275 (447)
Q Consensus       196 ~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~l~~~~~~~i  275 (447)
                         -.    +.+-+++                                  +.-.+||||.+| ..|...- ++...+..+
T Consensus       171 ---~~----VP~P~~~----------------------------------nRHaVvMe~ieG-~eL~~~r-~~~en~~~i  207 (304)
T COG0478         171 ---VK----VPKPIAW----------------------------------NRHAVVMEYIEG-VELYRLR-LDVENPDEI  207 (304)
T ss_pred             ---CC----CCCcccc----------------------------------ccceeeeehccc-ceeeccc-CcccCHHHH
Confidence               01    3333333                                  556899999984 5776654 245556666


Q ss_pred             HHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccce
Q 013230          276 LVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLS  338 (447)
Q Consensus       276 ~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla  338 (447)
                      +..|+.-+.-+-. .|+||+|+.+=|||++.++                    .+.++||--+
T Consensus       208 l~~il~~~~~~~~-~GiVHGDlSefNIlV~~dg--------------------~~~vIDwPQ~  249 (304)
T COG0478         208 LDKILEEVRKAYR-RGIVHGDLSEFNILVTEDG--------------------DIVVIDWPQA  249 (304)
T ss_pred             HHHHHHHHHHHHH-cCccccCCchheEEEecCC--------------------CEEEEeCccc
Confidence            6666666666666 9999999999999999998                    6999999643

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=98.12  E-value=2.4e-06  Score=89.76  Aligned_cols=86  Identities=21%  Similarity=0.250  Sum_probs=53.4

Q ss_pred             CCCCCCC--ceEEEEEEecCc--cchhhhhc--CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCcccc
Q 013230          240 PKEFPEN--QRYIVFVLQHGG--KDLESFVL--LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMN  313 (447)
Q Consensus       240 ~~~~~~~--~~~ivmE~~~gG--~~L~~~i~--l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~  313 (447)
                      |+++.+-  .-.++||||+|.  .||..+-.  ++...+..-+.|...-.  +-. .|++|.|-||+|||+..++     
T Consensus       267 P~Vy~~~st~RVLtME~~~G~~i~Dl~~i~~~gi~~~~i~~~l~~~~~~q--If~-~GffHaDPHPGNilv~~~~-----  338 (538)
T KOG1235|consen  267 PKVYWDLSTKRVLTMEYVDGIKINDLDAIDKRGISPHDILNKLVEAYLEQ--IFK-TGFFHADPHPGNILVRPNP-----  338 (538)
T ss_pred             CeehhhcCcceEEEEEecCCccCCCHHHHHHcCCCHHHHHHHHHHHHHHH--HHh-cCCccCCCCCCcEEEecCC-----
Confidence            4444442  578999999976  24433322  55544333333221111  113 7999999999999999653     


Q ss_pred             ccccCcccccccCCCcEEEeeccceeecCCC
Q 013230          314 FLLDGKQMFVRTFGLSVTIIDFTLSRINTGE  344 (447)
Q Consensus       314 ~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~  344 (447)
                                 ..+..+.+-|||+.+.....
T Consensus       339 -----------~~~~~ivllDhGl~~~is~~  358 (538)
T KOG1235|consen  339 -----------EGDEEIVLLDHGLYAVISHK  358 (538)
T ss_pred             -----------CCCccEEEEcccccccccHH
Confidence                       11237999999998766543

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=98.11  E-value=1.7e-05  Score=71.38  Aligned_cols=127  Identities=20%  Similarity=0.220  Sum_probs=85.2

Q ss_pred             cceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeee
Q 013230          135 ENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      +..+.||+|++|.||+|.    .+|+|+-+.+          .....+..|+++|..+..        .+.   -.+++.
T Consensus        25 ~v~~~L~KG~~s~Vyl~~~~~~~~a~Kvrr~d----------s~r~~l~kEakiLeil~g--------~~~---~p~vy~   83 (201)
T COG2112          25 RVEKELAKGTTSVVYLGEWRGGEVALKVRRRD----------SPRRNLEKEAKILEILAG--------EGV---TPEVYF   83 (201)
T ss_pred             hhhhhhhcccccEEEEeeccCceEEEEEecCC----------cchhhHHHHHHHHHHhhh--------cCC---CceEEE
Confidence            567889999999999986    5888875533          234678999999999987        342   234444


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-CCHHHHHHHHHHHHHHHHHHHHh
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-LNINEARSLLVQVTAGLAVAEAA  289 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-l~~~~~~~i~~Qil~gL~ylH~~  289 (447)
                      +                                  +..++.|||.+ |..|.++-. .+    +.-+..++.+ +|.-+.
T Consensus        84 y----------------------------------g~~~i~me~i~-G~~L~~~~~~~~----rk~l~~vlE~-a~~LD~  123 (201)
T COG2112          84 Y----------------------------------GEDFIRMEYID-GRPLGKLEIGGD----RKHLLRVLEK-AYKLDR  123 (201)
T ss_pred             e----------------------------------chhhhhhhhhc-Ccchhhhhhccc----HHHHHHHHHH-HHHHHH
Confidence            4                                  23567799998 557766532 22    2333344555 454445


Q ss_pred             CCeeeccCC-CCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC
Q 013230          290 YEFEHRDLH-WGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT  342 (447)
Q Consensus       290 ~~iiHrDLK-peNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~  342 (447)
                      .||-|..|. |..++|..++                    .+-|+||-.|+...
T Consensus       124 ~GI~H~El~~~~k~vlv~~~--------------------~~~iIDFd~At~k~  157 (201)
T COG2112         124 LGIEHGELSRPWKNVLVNDR--------------------DVYIIDFDSATFKK  157 (201)
T ss_pred             hccchhhhcCCceeEEecCC--------------------cEEEEEccchhhcc
Confidence            999999995 4444444443                    59999999887443

>PRK09902 hypothetical protein; Provisional

Probab=98.07  E-value=9.1e-05  Score=69.01  Aligned_cols=141  Identities=11%  Similarity=0.038  Sum_probs=94.5

Q ss_pred             ccccceEEEEec----eeEEEEEe--cCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEEEE
Q 013230          141 GEGTFGEAFLAG----NTVCKVVP--IDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKVC  214 (447)
Q Consensus       141 G~G~fG~V~~a~----~vAiK~i~--~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~~~  214 (447)
                      |+|+-+-|++..    .+-+|.-.  .....+    .+--...+.+|...+..|....-     |  .|.++ +.+.   
T Consensus        27 ~rgG~SgV~r~~~~g~~~ylKrq~nhl~~s~r----~P~g~ptf~rE~~~L~~L~~~Gv-----P--VP~pv-f~~~---   91 (216)
T PRK09902         27 RRNGMSGVQCVERNGKKLYVKRMTHHLFHSVR----YPFGRPTIVREVAVIKELERAGV-----I--VPKIV-FGEA---   91 (216)
T ss_pred             CCCCcceEEEEEeCCcEEEEEeccCccccccc----CCCCchHHHHHHHHHHHHHHcCC-----C--CCccc-eeee---
Confidence            557777787754    25566432  111111    01233578999999999987321     1  12233 2222   


Q ss_pred             eCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHHHHHHHH
Q 013230          215 QGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAGLAVAEA  288 (447)
Q Consensus       215 ~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~gL~ylH~  288 (447)
                       ++.                        ...-+-+||.|-+.|=.+|.+++.      .+...-+.++.+|...++-||+
T Consensus        92 -~k~------------------------~~~~rA~LVTe~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~  146 (216)
T PRK09902         92 -VKI------------------------EGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHS  146 (216)
T ss_pred             -ecc------------------------CCceEEEEEEEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHH
Confidence             110                        012347899998876689988864      3566668899999999999999


Q ss_pred             hCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceee
Q 013230          289 AYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRI  340 (447)
Q Consensus       289 ~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~  340 (447)
                       .|+.|+|+-+.|||++.++                  ++.|+++||--++.
T Consensus       147 -~Gv~Hgdly~khIll~~~g------------------~~~v~lIDlEk~r~  179 (216)
T PRK09902        147 -VNRQHGCCYVRHIYVKTEG------------------KAEAGFLDLEKSRR  179 (216)
T ss_pred             -CCCcCCCCCHhheeecCCC------------------CeeEEEEEhhccch
Confidence             9999999999999998665                  13699999976543

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=98.04  E-value=0.00012  Score=67.60  Aligned_cols=140  Identities=17%  Similarity=0.103  Sum_probs=88.9

Q ss_pred             CCCcceEEeccccc-eEEEEec----eeEEEEEe---cCCCc----cccccc------ccchHHHHHHHHHHHhcccccc
Q 013230          132 SDPENIVKVGEGTF-GEAFLAG----NTVCKVVP---IDGDL----KVNGEA------QKKSEELLEEVVLSWTLNHLRR  193 (447)
Q Consensus       132 ~~~~~~~~LG~G~f-G~V~~a~----~vAiK~i~---~~~~~----~~~~~~------~~~~~~~~~Ei~il~~L~h~~~  193 (447)
                      .+++.++.||.|+- |.||+++    .+|+|+..   .....    ...+..      ..+...+..|.+...+|+... 
T Consensus        37 ~~I~flefLg~g~~~~~V~kv~I~g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~~-  115 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDGYVFKVEIDGRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLKEAG-  115 (207)
T ss_pred             CcEeeeeecCCCCceeEEEEEEECCeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHHhcc-
Confidence            35699999999999 9999997    59999832   22110    000111      123456889999999988732 


Q ss_pred             CCCCCCCcccce--eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhcCCHHH
Q 013230          194 NEGDTLNACTTF--VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINE  271 (447)
Q Consensus       194 ~~~~~~n~~~~i--v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~l~~~~  271 (447)
                              +.++  |+.+++.....  .+.+.+...+          +......-..-||.||.....      .+... 
T Consensus       116 --------~e~~~Avkc~Gyl~L~~--~~q~~~~~~~----------~~~~~~~~~~aIVKD~v~~~~------~~~~~-  168 (207)
T PF13095_consen  116 --------REGLWAVKCHGYLLLTE--DQQFEQLRQR----------GSDHRPLPIRAIVKDFVPDDP------PLQIR-  168 (207)
T ss_pred             --------ccCceEEEeeEEEEEch--HHHHHHhhcc----------cccCCCCccEEEEEeecCCcc------ccchh-
Confidence                    2235  88899876543  2222222110          111112233579999998652      12333 


Q ss_pred             HHHHHHHHHHHHHHHHHhCCeeeccCCCCCEE
Q 013230          272 ARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVL  303 (447)
Q Consensus       272 ~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNIL  303 (447)
                         -+.+|++-|..+|. .||+-+|+|+.|..
T Consensus       169 ---~~~~~~~dl~~~~k-~gI~~~Dv~~~ny~  196 (207)
T PF13095_consen  169 ---DIPQMLRDLKILHK-LGIVPRDVKPRNYR  196 (207)
T ss_pred             ---HHHHHHHHHHHHHH-CCeeeccCcccccc
Confidence               34567777888999 99999999999985

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=98.04  E-value=0.0001  Score=68.86  Aligned_cols=44  Identities=18%  Similarity=0.147  Sum_probs=34.4

Q ss_pred             eEEeccccceEEEEece----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccc
Q 013230          137 IVKVGEGTFGEAFLAGN----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNH  190 (447)
Q Consensus       137 ~~~LG~G~fG~V~~a~~----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h  190 (447)
                      ++.|+.|..+.||++..    +++|.....          .....+.+|..+++.|..
T Consensus         2 i~~l~~G~~n~~~~v~~~~~~~vlK~~~~~----------~~~~~~~~e~~~~~~l~~   49 (239)
T PF01636_consen    2 IRPLSGGFSNRVYRVTTDDGRYVLKFYRPP----------DAAERLRREAAVLRQLAE   49 (239)
T ss_dssp             EEEEEESSSSEEEEEEETTSEEEEEEESSH----------HHHHHHHHHHHHHHHHHH
T ss_pred             CccCCCCCeeeEEEEEECCcEEEEEEeCCC----------CCHHHHHHHHHHHHHHHh
Confidence            57899999999999874    888875421          234677899999999876

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=97.83  E-value=1.6e-05  Score=84.22  Aligned_cols=143  Identities=19%  Similarity=0.222  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEEEE--------
Q 013230          278 QVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFL--------  349 (447)
Q Consensus       278 Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i~~--------  349 (447)
                      ++..||.|+|...++||+.|-|++|.++.++                    ..||+-|+++....++.++.+        
T Consensus       107 ~v~dgl~flh~sAk~VH~ni~p~~i~~na~~--------------------~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp  166 (700)
T KOG2137|consen  107 NVADGLAFLHRSAKVVHGNIQPEAIVVNANG--------------------DWKLAGFSFCVNANGPTEYPFSEYDPPLP  166 (700)
T ss_pred             cccchhhhhccCcceeecccchhheeeccCc--------------------ceeeccchhhhccCCCCccccccCCCCCC
Confidence            3449999999769999999999999999998                    699999998877665433111        


Q ss_pred             ------ecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhH--HHH-HHHHHHhhccCCCCCccchHHHHHHH
Q 013230          350 ------DLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVL--WLV-YLVDMLLLKKTFDRSSKDERDLRSLK  420 (447)
Q Consensus       350 ------~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~--~~~-~~~~~l~~~~~~~~~~~~s~~l~dLl  420 (447)
                            -.|.+||+..+.......|.|+ +|+..+-...+..+.....  ... -......+-..+....+++.++++=|
T Consensus       167 ~~~~~~~~f~apE~~~~~~~~~~sd~fS-lG~li~~i~~~gk~i~~a~~~~~~~~~~~~~~~~~~~~~s~~~p~el~~~l  245 (700)
T KOG2137|consen  167 LLLQPHLNFLAPEYLLGTTNTPASDVFS-LGVLIYTIYNGGKSIIAANGGLLSYSFSRNLLNAGAFGYSNNLPSELRESL  245 (700)
T ss_pred             hhhccCcccccchhhcccccccccccee-eeeEEEEEecCCcchhhccCCcchhhhhhcccccccccccccCcHHHHHHH
Confidence                  1178888888866667779999 8888777765543332211  011 11122222234444567899999999


Q ss_pred             HHhcccc-----CHHHHHcCCCCCCC
Q 013230          421 KRLDKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       421 ~~mL~~d-----sa~elL~HPff~~~  441 (447)
                      +++|..+     ++.+++.-|||++.
T Consensus       246 ~k~l~~~~~~rp~~~~l~~~~ff~D~  271 (700)
T KOG2137|consen  246 KKLLNGDSAVRPTLDLLLSIPFFSDP  271 (700)
T ss_pred             HHHhcCCcccCcchhhhhcccccCCc
Confidence            9999999     88999999999975

>KOG2464 consensus Serine/threonine kinase (haspin family) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.79  E-value=6.4e-05  Score=72.21  Aligned_cols=102  Identities=39%  Similarity=0.661  Sum_probs=85.8

Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCC-CCceEEEEEEecCccchhhhhcCCHHHHHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFP-ENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGL  283 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~ivmE~~~gG~~L~~~i~l~~~~~~~i~~Qil~gL  283 (447)
                      +..+...+++.|.+|..+..+  .|.-....+++.+.... ..+.|+++....+|..|..+..-+..++..++.|+...+
T Consensus        73 ~~~~~~~~~~~g~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~si~~q~~~~l  150 (246)
T KOG2464|consen   73 FTNLLSIKVVAGKYPDFLLKA--LYLVEKESENDRPQKFSGDAQLYLALVVEKGGLGLEHYKLESKNQALSIFWQLVLSL  150 (246)
T ss_pred             hheeeeEEeccCCCCchhhhh--hhhhhhcccccCccccccccceeeEEEEecCCccceecccccHHHHHHHHHHHHHHH
Confidence            788888889999999888777  56555667777777666 677888888777777777775578899999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRND  308 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~  308 (447)
                      +-..+..++.|||++++|||++..+
T Consensus       151 ~i~~~~~~~~hrdl~~gnili~k~~  175 (246)
T KOG2464|consen  151 AIAEKSLGFEHRDLHLGNILIKKTG  175 (246)
T ss_pred             HHhhhhhcccccccCcCcEEEeccc
Confidence            9999879999999999999999964

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=97.74  E-value=0.00043  Score=66.00  Aligned_cols=31  Identities=16%  Similarity=0.201  Sum_probs=26.4

Q ss_pred             CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceee
Q 013230          290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRI  340 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~  340 (447)
                      ..++|+|+.|+|||++.++                    .+.|+||+.|..
T Consensus       163 ~~l~HgD~~~~Nil~~~~~--------------------~~~iIDwe~a~~  193 (244)
T cd05150         163 LVVTHGDACLPNIIVDPGK--------------------FSGFIDLGRLGV  193 (244)
T ss_pred             eEEECCCCCCccEEEeCCc--------------------EEEEEEcccccc
Confidence            4589999999999999875                    578999997654

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=97.72  E-value=2.8e-05  Score=75.80  Aligned_cols=63  Identities=14%  Similarity=0.225  Sum_probs=55.3

Q ss_pred             CCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHHHHHHHHHHHH-hCCeeeccCCCCCEEEecCC
Q 013230          245 ENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQVTAGLAVAEA-AYEFEHRDLHWGNVLLSRND  308 (447)
Q Consensus       245 ~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Qil~gL~ylH~-~~~iiHrDLKpeNILl~~~~  308 (447)
                      .....++.||+..| +|.++++        +....-+++.-||+.||.|||+ ..-|+|..+...-|.+..++
T Consensus       144 ~~rviFiteymssg-s~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~~PpiihgnlTc~tifiq~ng  215 (458)
T KOG1266|consen  144 KPRVIFITEYMSSG-SLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSCDPPIIHGNLTCDTIFIQHNG  215 (458)
T ss_pred             ccceEEEEecccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhccCCccccCCcchhheeecCCc
Confidence            45578899999999 9999987        7778888999999999999996 25799999999999999776

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=97.60  E-value=0.00062  Score=64.65  Aligned_cols=44  Identities=16%  Similarity=0.126  Sum_probs=29.2

Q ss_pred             eEEeccccce-EEEEece-eEEEEEecCCCcccccccccchHHHHHHHHHHHhccc
Q 013230          137 IVKVGEGTFG-EAFLAGN-TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNH  190 (447)
Q Consensus       137 ~~~LG~G~fG-~V~~a~~-vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h  190 (447)
                      ++.|+.|+.. .||+... +++|..+.          ......+.+|..++..|..
T Consensus         2 ~~~~~~gG~~n~vy~~~~~~VlR~~~~----------~~~~~~~~~E~~~l~~L~~   47 (235)
T cd05155           2 IEPVDSGGTDNATFRLGDDMSVRLPSA----------AGYAGQVRKEQRWLPRLAP   47 (235)
T ss_pred             ceeccCCCcccceEEcCCceEEEcCCc----------cchHHHHHHHHHHHHHHhc
Confidence            4567877766 4898654 66775331          1123578999999998864

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=97.50  E-value=0.0021  Score=59.69  Aligned_cols=130  Identities=17%  Similarity=0.103  Sum_probs=86.6

Q ss_pred             eEEeccccceEEEEec---eeEEEEEecCCC--------cccccccccchHHHHHHHHHHHhcc-ccccCCCCCCCcccc
Q 013230          137 IVKVGEGTFGEAFLAG---NTVCKVVPIDGD--------LKVNGEAQKKSEELLEEVVLSWTLN-HLRRNEGDTLNACTT  204 (447)
Q Consensus       137 ~~~LG~G~fG~V~~a~---~vAiK~i~~~~~--------~~~~~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~n~~~~  204 (447)
                      ...||+|+.=.||.--   ...||++.....        ............+..+|+.-...+. .   .    .-....
T Consensus         6 ~~~i~~G~~R~cy~HP~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~---~----~~~~~~   78 (199)
T PF10707_consen    6 SDLIAQGGERDCYQHPDDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLR---R----GVDWSH   78 (199)
T ss_pred             CcccccCCCceEEECCCCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhc---c----CCcccc
Confidence            4679999999999876   378888775530        0000011123466788888777776 2   1    112233


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecC--c---cchhhhhc---CCHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHG--G---KDLESFVL---LNINEARSLL  276 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~g--G---~~L~~~i~---l~~~~~~~i~  276 (447)
                      |.+++++                              ..++...-+|+|....  |   .+|.+++.   ++. .++..+
T Consensus        79 i~r~~G~------------------------------veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~~~~~~-~~~~~L  127 (199)
T PF10707_consen   79 IPRFYGF------------------------------VETNLGLGLVVELIRDADGNISPTLEDYLKEGGLTE-ELRQAL  127 (199)
T ss_pred             cccEeEE------------------------------EecCCceEEEEEEEECCCCCcCccHHHHHHcCCccH-HHHHHH
Confidence            8899998                              3456678899998753  2   67888886   554 333333


Q ss_pred             HHHHHHHHHHHHhCCeeeccCCCCCEEEecCC
Q 013230          277 VQVTAGLAVAEAAYEFEHRDLHWGNVLLSRND  308 (447)
Q Consensus       277 ~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~  308 (447)
                      .   .-.+||-+ .+|+.+||+|.||++....
T Consensus       128 ~---~f~~~l~~-~~Iv~~dl~~~NIv~~~~~  155 (199)
T PF10707_consen  128 D---EFKRYLLD-HHIVIRDLNPHNIVVQRRD  155 (199)
T ss_pred             H---HHHHHHHH-cCCeecCCCcccEEEEecC
Confidence            3   34457778 9999999999999999886

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>PLN02876 acyl-CoA dehydrogenase

Probab=97.49  E-value=0.0013  Score=73.90  Aligned_cols=47  Identities=17%  Similarity=0.230  Sum_probs=32.2

Q ss_pred             ceEEeccccceEEEEec--------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhcc
Q 013230          136 NIVKVGEGTFGEAFLAG--------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN  189 (447)
Q Consensus       136 ~~~~LG~G~fG~V~~a~--------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~  189 (447)
                      .++.++.|.++.+|+..        .+++|+.+...       .......+.+|+.+|+.|.
T Consensus        42 ~v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~-------~~~~~~~~~rE~~~l~~L~   96 (822)
T PLN02876         42 KVSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGK-------LLQSAHAVEREYQVLRALG   96 (822)
T ss_pred             eEEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCc-------cCccHHHHHHHHHHHHHHh
Confidence            46889999999999864        35666544221       1122356789999999996

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=97.49  E-value=0.001  Score=68.26  Aligned_cols=53  Identities=15%  Similarity=0.155  Sum_probs=34.4

Q ss_pred             ceEEeccccceEEEEec------eeEEEEEecCCCccccccc-ccchHHHHHHHHHHHhccc
Q 013230          136 NIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEA-QKKSEELLEEVVLSWTLNH  190 (447)
Q Consensus       136 ~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~-~~~~~~~~~Ei~il~~L~h  190 (447)
                      .++.||.|.+..||++.      .+++|.-...  .+..+.. .-..++...|...|+.+..
T Consensus        30 ~~~elggGn~N~VyrV~~~~g~~svIVKqa~p~--~r~~g~~wpl~~eR~~~Eae~L~~l~~   89 (401)
T PRK09550         30 TAREIGDGNLNLVFRVSDTEGGKSVIVKQALPY--VRVVGESWPLTLDRARIEAEALKIQAK   89 (401)
T ss_pred             eeeEcCCCceEEEEEEEeCCCCeEEEEEecCcc--cccccccccccHHHHHHHHHHHHHHHh
Confidence            45789999999999985      3778864311  1111121 2345677889999888754

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=97.41  E-value=0.002  Score=61.28  Aligned_cols=73  Identities=21%  Similarity=0.187  Sum_probs=55.5

Q ss_pred             eEEEEEEecCc----cchhhhhcCCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCccccc
Q 013230          248 RYIVFVLQHGG----KDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFV  323 (447)
Q Consensus       248 ~~ivmE~~~gG----~~L~~~i~l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~  323 (447)
                      -.+||||+...    ..|.+.- +...++..+..+++..+.-|-...++||.||..=|||+..+                
T Consensus       141 nVLvMEfIg~~g~pAP~LkDv~-~e~~e~~~~~~~~v~~~~~l~~~a~LVHgDLSEyNiL~~~~----------------  203 (268)
T COG1718         141 NVLVMEFIGDDGLPAPRLKDVP-LELEEAEGLYEDVVEYMRRLYKEAGLVHGDLSEYNILVHDG----------------  203 (268)
T ss_pred             CeEEEEeccCCCCCCCCcccCC-cCchhHHHHHHHHHHHHHHHHHhcCcccccchhhheEEECC----------------
Confidence            57999998522    1222221 44447888999999999988755999999999999999944                


Q ss_pred             ccCCCcEEEeeccceeecC
Q 013230          324 RTFGLSVTIIDFTLSRINT  342 (447)
Q Consensus       324 ~~~~~~vkL~DFGla~~~~  342 (447)
                           .+.|||||-|....
T Consensus       204 -----~p~iID~~QaV~~~  217 (268)
T COG1718         204 -----EPYIIDVSQAVTID  217 (268)
T ss_pred             -----eEEEEECccccccC
Confidence                 69999999776544

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=97.22  E-value=0.0024  Score=62.63  Aligned_cols=45  Identities=16%  Similarity=0.080  Sum_probs=32.5

Q ss_pred             cceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccc
Q 013230          135 ENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNH  190 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h  190 (447)
                      ..++.|..|.-..+|++.    .+++|+...           .....+..|+.++..|.+
T Consensus        17 ~~i~~i~~G~~n~~y~v~~~~~~~vLr~~~~-----------~~~~~~~~e~~~l~~L~~   65 (296)
T cd05153          17 LSFEGISAGIENTNYFVTTDSGRYVLTLFEK-----------VSAEELPFFLALLDHLAE   65 (296)
T ss_pred             hheecccCccccceEEEEeCCCcEEEEEcCC-----------CChHhccHHHHHHHHHHH
Confidence            457888888888999875    478887652           122456789999988865

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=97.16  E-value=2e-05  Score=82.87  Aligned_cols=162  Identities=20%  Similarity=0.076  Sum_probs=109.6

Q ss_pred             cceEEeccccceEEEEeceeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEEEE
Q 013230          135 ENIVKVGEGTFGEAFLAGNTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKVC  214 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~~~  214 (447)
                      +....+++|+++++++.|+.|-|.+...-      ..+.  ....-++++|.+++|        ||.   .+..++-   
T Consensus       245 ~~fh~fvK~altknpKkRptaeklL~h~f------vs~~--l~~rl~~eLLdK~n~--------P~~---~v~~~~d---  302 (829)
T KOG0576|consen  245 EFFHNFVKGALTKNPKKRPTAEKLLQHPF------VSQT--LSRRLAIELLDKVNN--------PNP---VVRYLED---  302 (829)
T ss_pred             HHHHHHHHHHhcCCCccCCChhhheecee------eccc--hhhHHHHHHHHHccC--------CCC---ccccccc---
Confidence            55566799999999999998888665221      1111  345668889999998        771   3333332   


Q ss_pred             eCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHHHHHHHHh
Q 013230          215 QGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAGLAVAEAA  289 (447)
Q Consensus       215 ~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~gL~ylH~~  289 (447)
                                                 ...+...+|+|+++.+|++-...+.     +..-+...+.+.-+.+|+++|+ 
T Consensus       303 ---------------------------~~~E~~~~i~~~i~s~~rs~~~~~~~se~~~~~~~~~~~~r~et~~l~~l~~-  354 (829)
T KOG0576|consen  303 ---------------------------YDGEDYLWIPMRICSTGRSSALEMTVSEIALEQYQFAYPLRKETRPLAELHS-  354 (829)
T ss_pred             ---------------------------CCcccccchhhhhhcCCccccccCChhhHhhhhhhhhhhhhhhccccccccc-
Confidence                                       2235678999999998844443333     5555566677778899999998 


Q ss_pred             CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCCCCCCCCCCCc
Q 013230          290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDPELFSGPKGDK  365 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~pelf~g~~~~~  365 (447)
                      ..=+|||    |||....                     ..|..|||........    ..+..+..++|++-.......
T Consensus       355 ~~~~~~d----~~l~s~~---------------------~~~~~~~~v~~~L~~~~~~~t~~~~~~~~~pev~~~~~~~~  409 (829)
T KOG0576|consen  355 SYKVHRD----NILGSEE---------------------EVKLLDFAVPPQLTRTMKPRTAIGTPEPLAPEVIQENTIDG  409 (829)
T ss_pred             ccccCcc----ccccccc---------------------ccccccccCCcccCcccccccCCCCCCCCCchhhccccccc
Confidence            6568998    9988886                     5899999988765443    234445566777555544444


Q ss_pred             hHHHHH
Q 013230          366 QFDTYR  371 (447)
Q Consensus       366 ~~di~s  371 (447)
                      ..+.|+
T Consensus       410 ~p~~~~  415 (829)
T KOG0576|consen  410 CPDSGS  415 (829)
T ss_pred             CCCccC
Confidence            446665

>PF12330 DUF3635: Domain of unknown function (DUF3635); InterPro: IPR024604 This domain may be a potential Haspin-related leucine-zipper

Probab=97.09  E-value=0.00045  Score=56.39  Aligned_cols=66  Identities=48%  Similarity=0.825  Sum_probs=46.1

Q ss_pred             CCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHh
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRL  423 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~m  423 (447)
                      ++|.| .++.|+|||+.|...+...|..+.|.+|+.|..|+.+.++.+...+... -....++.+.++
T Consensus         2 ~~F~g-~gD~QfdiYr~Mr~~~~~~W~~f~P~TNvlWL~YL~~kLl~~~~~~~~~-~~~~~r~~~~~l   67 (98)
T PF12330_consen    2 ELFEG-RGDYQFDIYRLMRSLTKNDWSEFEPKTNVLWLHYLADKLLDKKKYKKKP-STKLQRKKLKKL   67 (98)
T ss_dssp             GGGS---SSHHHHHHHHHHHHHTT-TTS--THHHHHHHHHHHHHHHHS--BSSTS--SHHHHHHHHHH
T ss_pred             ccccC-CCccHHHHHHHHHHHhhCcchhcCCHHHHHHHHHHHHHHHHHccCCCCC-CcHHHHHHHHHH
Confidence            57888 6799999999999999999999999999999999999998765555421 233444444444

A leucine zipper was proposed to be present towards the C terminus of human Haspin, (up-stream of the current family) []; however, as this domain would appear to span several helices and be largely within a loop structure [], the actual zipper might be further downstream, and be represented by this entry, which is the very C-terminal part of the Schizosaccharomyces pombe sequence.; PDB: 2WB8_A 3F2N_A 3FMD_A 3DLZ_A 2VUW_A 3IQ7_A 3E7V_A.

>PRK05231 homoserine kinase; Provisional

Probab=97.08  E-value=0.0057  Score=60.75  Aligned_cols=31  Identities=29%  Similarity=0.327  Sum_probs=26.3

Q ss_pred             CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceee
Q 013230          290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRI  340 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~  340 (447)
                      .++||+|++|.|||++.+.                    ..-|+||+.+..
T Consensus       187 ~~liHgD~~~~Nil~~~~~--------------------~~~iIDf~~~~~  217 (319)
T PRK05231        187 RGVIHADLFRDNVLFEGDR--------------------LSGFIDFYFACN  217 (319)
T ss_pred             cccCCCCCCCCcEEEECCc--------------------eEEEEecccccC
Confidence            4899999999999998664                    457999998765

>PRK10593 hypothetical protein; Provisional

Probab=97.06  E-value=0.012  Score=58.19  Aligned_cols=46  Identities=7%  Similarity=-0.041  Sum_probs=33.0

Q ss_pred             cceEEeccccceEEEEece----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccc
Q 013230          135 ENIVKVGEGTFGEAFLAGN----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNH  190 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h  190 (447)
                      ..++.||.|..+.||+...    +.+|..+..          .....+..|...|+.|..
T Consensus        17 ~~~~~i~~G~~~~vy~~~~~~~~~~~k~~~~~----------~~~~~~~~Ea~~L~~L~~   66 (297)
T PRK10593         17 SRVECISEQPYAALWALYDSQGNPMPLMARSF----------STPGVAQQEAWKLSMLAR   66 (297)
T ss_pred             heeeecCCccceeEEEEEcCCCCEEEEEeccc----------ccchHHHHHHHHHHHHcc
Confidence            5568899999999999642    566664311          122468999999999865

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=96.95  E-value=0.0043  Score=57.05  Aligned_cols=97  Identities=16%  Similarity=0.142  Sum_probs=75.4

Q ss_pred             HHHHHHHHhccccccCCCCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCc
Q 013230          179 LEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGG  258 (447)
Q Consensus       179 ~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG  258 (447)
                      ..|..+|+.+.+..       +    +.+++++.                                 + -++|.||...|
T Consensus         7 ~~E~lll~~l~~~~-------~----~pk~lG~C---------------------------------G-~~~v~E~~~~~   41 (188)
T PF12260_consen    7 NNEPLLLQLLQGSE-------P----FPKLLGSC---------------------------------G-RFYVVEYVGAG   41 (188)
T ss_pred             ccHHHHHHHcCCCC-------C----CCCeeeEC---------------------------------C-CEEEEEeecCc
Confidence            45888999997732       2    89999882                                 2 36688999765


Q ss_pred             c------chhhhhcCCHHHHHHHHHHHHHHHHHHHH--hCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcE
Q 013230          259 K------DLESFVLLNINEARSLLVQVTAGLAVAEA--AYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSV  330 (447)
Q Consensus       259 ~------~L~~~i~l~~~~~~~i~~Qil~gL~ylH~--~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~v  330 (447)
                      .      .|.++..-++.....|+.|++..+.+++.  ...+.-.|++|+|+-++.++                    .+
T Consensus        42 ~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l~~l~~~~~~~~~lcDv~~~nfgv~~~~--------------------~l  101 (188)
T PF12260_consen   42 SLYGIYRPLSQFLQSPWEQRAKIALQLLELLEELDHGPLGFFYLCDVSPDNFGVNDDG--------------------RL  101 (188)
T ss_pred             cccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecchHHeEEeCCC--------------------cE
Confidence            2      24456567899999999999999999984  12377889999999999887                    79


Q ss_pred             EEeeccceee
Q 013230          331 TIIDFTLSRI  340 (447)
Q Consensus       331 kL~DFGla~~  340 (447)
                      |++|......
T Consensus       102 k~iDld~v~~  111 (188)
T PF12260_consen  102 KLIDLDDVFV  111 (188)
T ss_pred             EEEechhcch
Confidence            9999986544

Proteins in this uncharacterised family are described as transmembrane proteins.

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=96.86  E-value=0.011  Score=55.81  Aligned_cols=31  Identities=32%  Similarity=0.555  Sum_probs=26.5

Q ss_pred             CCeeeccCCCCCEEEec-CCCccccccccCcccccccCCCcEEEeeccceee
Q 013230          290 YEFEHRDLHWGNVLLSR-NDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRI  340 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~-~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~  340 (447)
                      .+++|+|+++.|||++. ++                    .+.|+||-.|..
T Consensus       170 ~~l~H~Dl~~~Nil~~~~~~--------------------~~~lIDwe~a~~  201 (235)
T cd05157         170 IVFCHNDLLSGNIIYNEEKN--------------------SVKFIDYEYAGY  201 (235)
T ss_pred             EEEEcCCCCcCcEEEeCCCC--------------------CEEEEEcccCCc
Confidence            47999999999999998 34                    699999987664

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=96.75  E-value=0.0094  Score=60.13  Aligned_cols=50  Identities=16%  Similarity=0.112  Sum_probs=31.8

Q ss_pred             EeccccceEEEEec------eeEEEEEecCCCccccc-ccccchHHHHHHHHHHHhccc
Q 013230          139 KVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNG-EAQKKSEELLEEVVLSWTLNH  190 (447)
Q Consensus       139 ~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~-~~~~~~~~~~~Ei~il~~L~h  190 (447)
                      .||.|.-..||++.      .++||.-..  ..+..+ .-.-..++...|...|+....
T Consensus         2 EigdGnlN~VfrV~~~~g~~svIVKQAlp--~vRv~g~~wpl~~~R~~~E~~~L~~~~~   58 (370)
T TIGR01767         2 EVGDGNLNLVFHVYDQEGDRAAIVKQALP--YVRVVGESWPLTLDRARIESSALIRQGE   58 (370)
T ss_pred             cCCCCceEEEEEEEcCCCCeeEEEEEcCH--HHhhcCCCCCCCccHHHHHHHHHHHhhc
Confidence            57999999999994      377774221  111112 223445677889999987754

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=96.73  E-value=0.016  Score=57.24  Aligned_cols=31  Identities=29%  Similarity=0.353  Sum_probs=26.9

Q ss_pred             CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceee
Q 013230          290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRI  340 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~  340 (447)
                      .+++|+|+++.||+++.++                    .+.|+||+.+..
T Consensus       187 ~~l~HgD~~~~Nvl~~~~~--------------------~~~vIDfd~~~~  217 (307)
T TIGR00938       187 RGVIHADLFPDNVLFDGDS--------------------VKGVIDFYFACT  217 (307)
T ss_pred             CccCCCCCCcCcEEEECCc--------------------eEEEeecccccC
Confidence            7899999999999999875                    568999997654

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>TIGR02721 ycfN_thiK thiamine kinase

Probab=96.72  E-value=0.0073  Score=58.02  Aligned_cols=32  Identities=19%  Similarity=0.242  Sum_probs=26.9

Q ss_pred             CeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCC
Q 013230          291 EFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG  343 (447)
Q Consensus       291 ~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~  343 (447)
                      .++|+|+.|+|||++.++                     +.|+||..|.....
T Consensus       147 ~l~H~Dl~~~Nil~~~~~---------------------~~lIDwE~a~~gdp  178 (256)
T TIGR02721       147 APLHMDVHAYNLVVTPQG---------------------LKLIDWEYASDGDI  178 (256)
T ss_pred             eeecCCCCcCcEEEeCCC---------------------CEEEeccccCcCCH
Confidence            589999999999998864                     68999998876443

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]

Probab=95.94  E-value=0.041  Score=56.03  Aligned_cols=154  Identities=19%  Similarity=0.198  Sum_probs=90.8

Q ss_pred             chhhhhhccCCCcceEEeccccceEEEEec---------------------eeEEEEEecCCCcccccccccchHHHHHH
Q 013230          123 KLLDLFSKYSDPENIVKVGEGTFGEAFLAG---------------------NTVCKVVPIDGDLKVNGEAQKKSEELLEE  181 (447)
Q Consensus       123 ~~~~~~~~y~~~~~~~~LG~G~fG~V~~a~---------------------~vAiK~i~~~~~~~~~~~~~~~~~~~~~E  181 (447)
                      .+.++|..+.    -..||.|+-++||+|.                     .+|+|+....           ..+.+.+.
T Consensus       184 ~~~eiF~efn----~~PIGsG~IAQVY~atl~~a~lekd~~~~~~~~~~tq~~AiKv~Hp~-----------V~~~ir~D  248 (565)
T KOG1236|consen  184 KIEEIFSEFN----REPIGSGCIAQVYRATLKTAYLEKDSGKEYVQKLGTQSCAIKVLHPN-----------VEKQIRLD  248 (565)
T ss_pred             cHHHHHHhcC----CcccccchhhhhhhhhhhHHHhhcccchhhhcCCccceeeeeccCcc-----------HHHHHHHH
Confidence            4555555552    3579999999999985                     2777775532           22455666


Q ss_pred             HHHHHhccccccCCCCCCCcccceeeeeeEEEEeCCCchHHHHHhhhccc---------ccC---CCCC-------CCCC
Q 013230          182 VVLSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDD---------KHC---SEND-------NPKE  242 (447)
Q Consensus       182 i~il~~L~h~~~~~~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~---------~~~---~~~~-------~~~~  242 (447)
                      ..||.....+       +|    +|.-..+-.     .+..+++|..+-.         .+.   ..|-       .|.-
T Consensus       249 l~Il~f~Akl-------~~----~vP~l~wL~-----l~~~vkqF~v~ln~QvdL~~EA~hL~rF~~NF~~s~~V~fP~P  312 (565)
T KOG1236|consen  249 LGILGFGAKL-------IN----NVPDLSWLS-----LPLEVKQFSVGLNAQVDLRQEALHLPRFTNNFSGSKKVLFPKP  312 (565)
T ss_pred             HHHHhhhhhh-------hh----hcCcccccc-----CcchHHHHHHHHHhhcchhhhhhhhHHHHHhcccceeecCCcc
Confidence            6677655442       34    444443321     2334455444321         110   1111       1111


Q ss_pred             CC--CCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCC
Q 013230          243 FP--ENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRND  308 (447)
Q Consensus       243 ~~--~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~  308 (447)
                      ..  .....++-+|+. |..+..+++   .++...+.++.-...||--+--.-+++|.|++|+|||+..+.
T Consensus       313 ~~~~~~~~vl~E~~~~-Gl~v~~~v~~~~~pe~l~kkva~lg~~AllkMl~vDNFvHaDlHPGNVlirf~~  382 (565)
T KOG1236|consen  313 IAPLHTDLVLVETYER-GLSVLRFVKWKSQPEALVKKVAKLGVNALLKMLIVDNFVHADLHPGNVLIRFNK  382 (565)
T ss_pred             cccccccceeeeeccc-cccHHhhhhcccChHHHHHHHHHHHHHHHHHHHHhhcceecccCCCcEEEEecC
Confidence            11  122445556666 668888887   666667777766677776655447999999999999998765

>PRK12396 5-methylribose kinase; Reviewed

Probab=95.76  E-value=0.029  Score=57.39  Aligned_cols=52  Identities=12%  Similarity=0.139  Sum_probs=35.2

Q ss_pred             eEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccc
Q 013230          137 IVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNH  190 (447)
Q Consensus       137 ~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h  190 (447)
                      ++.||.|.-..||++.+      ++||.-..  ..++...-.-..++...|..+|+.+..
T Consensus        34 ~~eigdGnlN~VfrV~~~~~~~svIVKQAlp--~vRv~~swpL~~~R~~~E~~aL~~~~~   91 (409)
T PRK12396         34 CKEIGDGNLNYVFRVWDEQKNISVIVKQAGD--TARISDEFKLSTNRIRIESDVLQLEEE   91 (409)
T ss_pred             eeEcCCCceEEEEEEeeCCCCceEEEEeccH--hhccCCCCCCChHHHHHHHHHHHHHHh
Confidence            68899999999999962      67774211  111222224456788899999998765

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=95.15  E-value=0.022  Score=56.33  Aligned_cols=136  Identities=13%  Similarity=0.121  Sum_probs=82.5

Q ss_pred             cceEEeccccceEEEEece-----eEEEEEecCCCc----------cccc--ccccc--hHHHHHHHHHHHhccccccCC
Q 013230          135 ENIVKVGEGTFGEAFLAGN-----TVCKVVPIDGDL----------KVNG--EAQKK--SEELLEEVVLSWTLNHLRRNE  195 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~-----vAiK~i~~~~~~----------~~~~--~~~~~--~~~~~~Ei~il~~L~h~~~~~  195 (447)
                      .+..+||-|-=+.||.+.+     .++|.-+..+..          +...  -...+  .-.+.+|...|+.|...-.  
T Consensus        95 svGnqIGVGKESDIY~v~d~~G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~kEfafmkaL~e~gf--  172 (465)
T KOG2268|consen   95 SVGNQIGVGKESDIYVVADEEGNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATKEFAFMKALYERGF--  172 (465)
T ss_pred             hhccccccccccceEEEecCCCCchhHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHHHHHHHHHHHHHHcCC--
Confidence            6678899999999998753     566643322110          0000  00111  1245788888888865100  


Q ss_pred             CCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-CCHHHHHH
Q 013230          196 GDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-LNINEARS  274 (447)
Q Consensus       196 ~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-l~~~~~~~  274 (447)
                         |     +.+.+|                                  .+.-++|||++. |..|.+.-. .+...+..
T Consensus       173 ---p-----VPkpiD----------------------------------~~RH~Vvmelv~-g~Pl~~v~~v~d~~~ly~  209 (465)
T KOG2268|consen  173 ---P-----VPKPID----------------------------------HNRHCVVMELVD-GYPLRQVRHVEDPPTLYD  209 (465)
T ss_pred             ---C-----CCCccc----------------------------------ccceeeHHHhhc-ccceeeeeecCChHHHHH
Confidence               1     223333                                  355689999998 558877654 33333332


Q ss_pred             HHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeecccee
Q 013230          275 LLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSR  339 (447)
Q Consensus       275 i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~  339 (447)
                      -+..+   +--|-. +|+||+|..-=||+++.++                    .+++|||--.-
T Consensus       210 ~lm~~---Iv~la~-~GlIHgDFNEFNimv~dd~--------------------~i~vIDFPQmv  250 (465)
T KOG2268|consen  210 DLMGL---IVRLAN-HGLIHGDFNEFNIMVKDDD--------------------KIVVIDFPQMV  250 (465)
T ss_pred             HHHHH---HHHHHH-cCceecccchheeEEecCC--------------------CEEEeechHhh
Confidence            22222   223345 9999999999999999877                    79999997443

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=94.97  E-value=0.15  Score=51.07  Aligned_cols=33  Identities=30%  Similarity=0.571  Sum_probs=27.1

Q ss_pred             eeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCC
Q 013230          292 FEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG  343 (447)
Q Consensus       292 iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~  343 (447)
                      ++|.|+.++|||++.++.                   .++++||..|.....
T Consensus       184 ~CHnDl~~~NiL~~~~~~-------------------~l~lID~EYag~nd~  216 (330)
T PLN02421        184 FAHNDLLSGNLMLNEDEG-------------------KLYFIDFEYGSYSYR  216 (330)
T ss_pred             EEECCCCcccEEEeCCCC-------------------cEEEEcccccCCCcc
Confidence            799999999999986532                   699999998876544

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=94.74  E-value=0.39  Score=47.85  Aligned_cols=35  Identities=17%  Similarity=0.335  Sum_probs=29.9

Q ss_pred             CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC
Q 013230          290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE  344 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~  344 (447)
                      ..++|+|++++|||++..+                    .+-++||+++....+.
T Consensus       198 ~~lvHGD~~~gNlii~~~~--------------------~~gVlDwe~~~lGDP~  232 (321)
T COG3173         198 PVLVHGDYRPGNLIIDPGR--------------------PTGVLDWELATLGDPL  232 (321)
T ss_pred             ceeeeCCcccCCEEEeCCC--------------------eeEEEeccccccCCcH
Confidence            3689999999999999997                    5889999999875543

>PLN02756 S-methyl-5-thioribose kinase

Probab=94.13  E-value=0.62  Score=48.02  Aligned_cols=52  Identities=19%  Similarity=0.106  Sum_probs=31.5

Q ss_pred             ceEEeccccceEEEEec----eeEEEEEecCCCcccccc-cccchHHHHHHHHHHHhcc
Q 013230          136 NIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGE-AQKKSEELLEEVVLSWTLN  189 (447)
Q Consensus       136 ~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~-~~~~~~~~~~Ei~il~~L~  189 (447)
                      .++.||.|.-..||+..    .++||.-.....  ..+. -.-...+...|...|+.+.
T Consensus        36 ~~~eiggGn~N~VyrV~~~~~svVVKqa~p~~r--~vga~wpl~~~R~~~Ea~aL~~~~   92 (418)
T PLN02756         36 KIKEVGDGNLNFVYIVVSSSGSFVIKQALPYIR--CIGESWPMTKERAYFEATALREHG   92 (418)
T ss_pred             eEEEcCCCceeeEEEEEcCCccEEEEeCCcccc--CCCccccCCccHHHHHHHHHHHhh
Confidence            46889999999999986    377885431111  0111 0113345566777777665

>PHA03111 Ser/Thr kinase; Provisional

Probab=94.06  E-value=0.067  Score=53.06  Aligned_cols=94  Identities=18%  Similarity=0.231  Sum_probs=52.6

Q ss_pred             CceEEEEEEecCcc---chhhhhc----CCHHHHHHHHHHHHHHHHHHHH---hCCeeeccCCCCCEEEecCCCcccccc
Q 013230          246 NQRYIVFVLQHGGK---DLESFVL----LNINEARSLLVQVTAGLAVAEA---AYEFEHRDLHWGNVLLSRNDSVTMNFL  315 (447)
Q Consensus       246 ~~~~ivmE~~~gG~---~L~~~i~----l~~~~~~~i~~Qil~gL~ylH~---~~~iiHrDLKpeNILl~~~~~~~~~~~  315 (447)
                      ..-.|||.++.+..   ++.....    --..-++.++.||+.-.-.+-+   ...++|-||||.|||+-.... .....
T Consensus       248 rGnIIIfPLArcSadkv~~~~~~e~GF~s~~~YikfifLQiaLLyikIYelp~c~nF~H~DLKPdNILiFds~~-~i~I~  326 (444)
T PHA03111        248 RGNIIIFPLARCSADKVTEENAAELGFKSLVEYIKFIFLQIALLYIKIYELPCCDNFLHVDLKPDNILIFDSDE-PISIT  326 (444)
T ss_pred             CCcEEEEehhhcccccCCHHHHHHcCCccHHHHHHHHHHHHHHHHHhhhcCCCcceeeeccCCCCcEEEecCCC-cEEEE
Confidence            45678888775321   1111112    2245678888888655433321   257999999999999987752 11111


Q ss_pred             ccCcccccccCCCcEEEeeccceeec
Q 013230          316 LDGKQMFVRTFGLSVTIIDFTLSRIN  341 (447)
Q Consensus       316 ~~~~~~~~~~~~~~vkL~DFGla~~~  341 (447)
                      ..+ ...+-..-+..+|.||.+|+..
T Consensus       327 ~~~-~~~vF~Epi~~~LnDFDfSqv~  351 (444)
T PHA03111        327 LKD-ATYVFNEPIKACLNDFDFSQVA  351 (444)
T ss_pred             ECC-eEEEeccchhhhhcccCHHHHc
Confidence            111 1111222235677888877654

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=93.38  E-value=0.13  Score=50.45  Aligned_cols=33  Identities=36%  Similarity=0.552  Sum_probs=27.8

Q ss_pred             CCeeeccCCCCCEEEecC----CCccccccccCcccccccCCCcEEEeeccceeecC
Q 013230          290 YEFEHRDLHWGNVLLSRN----DSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT  342 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~----~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~  342 (447)
                      ..++|.|++|.|||++.+    +                    .+.++||..|....
T Consensus       179 ~~lcH~Dl~~~Nil~~~~~~~~~--------------------~i~lIDwEya~~~~  215 (302)
T cd05156         179 VVFCHNDLQEGNILLLNPSSETK--------------------KLVLIDFEYASYNY  215 (302)
T ss_pred             ceEEecCCCcCeEEecCCCCCCC--------------------cEEEEeeCCCCCCC
Confidence            578999999999999974    4                    68999999876543

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>PF05445 Pox_ser-thr_kin: Poxvirus serine/threonine protein kinase; InterPro: IPR008790 This family of proteins contain poxvirus serine/threonine protein kinases, which are essential for phosphorylation of virion proteins during virion assembly

Probab=93.29  E-value=0.081  Score=52.72  Aligned_cols=91  Identities=18%  Similarity=0.273  Sum_probs=50.1

Q ss_pred             ceEEEEEEecCc---cchhhhhc----CCHHHHHHHHHHHHHHHHHHH-----HhCCeeeccCCCCCEEEecCCCccccc
Q 013230          247 QRYIVFVLQHGG---KDLESFVL----LNINEARSLLVQVTAGLAVAE-----AAYEFEHRDLHWGNVLLSRNDSVTMNF  314 (447)
Q Consensus       247 ~~~ivmE~~~gG---~~L~~~i~----l~~~~~~~i~~Qil~gL~ylH-----~~~~iiHrDLKpeNILl~~~~~~~~~~  314 (447)
                      .-.|||.++.+.   -++.....    --..-++.++.||+  |-|+-     ....++|-||||.|||+-.... ....
T Consensus       245 GnIIIfPLA~~Sadkv~~~~~~e~GF~s~~~YvkfifLQia--LLyikIYelp~c~nF~H~DLKPdNILiFds~~-~i~I  321 (434)
T PF05445_consen  245 GNIIIFPLARCSADKVTESNAAELGFKSNVEYVKFIFLQIA--LLYIKIYELPCCTNFLHVDLKPDNILIFDSKE-PIRI  321 (434)
T ss_pred             CcEEEEehhhcchhhcCHHHHHhcCchhHHHHHHHHHHHHH--HHHeeeecCCCcceeeecccCcCcEEEecCCC-ceEE
Confidence            346888877522   11111112    22345777777775  44421     2257999999999999987652 1111


Q ss_pred             cccCcccccccCCCcEEEeeccceeec
Q 013230          315 LLDGKQMFVRTFGLSVTIIDFTLSRIN  341 (447)
Q Consensus       315 ~~~~~~~~~~~~~~~vkL~DFGla~~~  341 (447)
                      ...+ ...+-..-+.++|.||.+|+..
T Consensus       322 ~~~~-~~~vF~Epi~~~LnDFDfSqv~  347 (434)
T PF05445_consen  322 KFGN-RNYVFKEPIRCCLNDFDFSQVA  347 (434)
T ss_pred             EECC-eEEEecccceeeecccCHHHhc
Confidence            1111 1122222345788888888764

; GO: 0004672 protein kinase activity, 0005524 ATP binding

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=93.09  E-value=0.19  Score=49.36  Aligned_cols=30  Identities=40%  Similarity=0.649  Sum_probs=25.9

Q ss_pred             CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceee
Q 013230          290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRI  340 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~  340 (447)
                      .+++|+|+++.|||++.+                     .+.|+||+.+..
T Consensus       187 ~~liHgD~~~~Nil~~~~---------------------~i~lIDfd~~~~  216 (313)
T TIGR02906       187 RGFCHQDYAYHNILLKDN---------------------EVYVIDFDYCTI  216 (313)
T ss_pred             CceEcCCCCcccEEEeCC---------------------cEEEEECccccc
Confidence            689999999999999874                     578999997654

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=93.03  E-value=0.33  Score=49.68  Aligned_cols=60  Identities=8%  Similarity=0.029  Sum_probs=51.2

Q ss_pred             eEEEEEEecCccchhhhhc----------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCC
Q 013230          248 RYIVFVLQHGGKDLESFVL----------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRND  308 (447)
Q Consensus       248 ~~ivmE~~~gG~~L~~~i~----------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~  308 (447)
                      +-+.|..+.|-+....+..          +.++.+....+.|+.+.+-||. .|-+-+|+.++|+|+.+++
T Consensus        85 iGflmP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~-~Gh~vGDVn~~~~lVsd~~  154 (637)
T COG4248          85 IGFLMPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHE-HGHVVGDVNQNSFLVSDDS  154 (637)
T ss_pred             eEEecccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHh-cCCcccccCccceeeecCc
Confidence            5678888875545554443          7889999999999999999999 9999999999999999997

>PTZ00384 choline kinase; Provisional

Probab=93.02  E-value=0.64  Score=47.64  Aligned_cols=31  Identities=32%  Similarity=0.515  Sum_probs=25.5

Q ss_pred             CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeec
Q 013230          290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRIN  341 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~  341 (447)
                      ..++|.|+-++|||.+.+                     .+.++||-.|...
T Consensus       227 ~VfCHNDL~~gNIL~~~~---------------------~l~lID~EYA~~n  257 (383)
T PTZ00384        227 VLFCHNDLFFTNILDFNQ---------------------GIYFIDFDFAGFN  257 (383)
T ss_pred             eeeeeccCCcccEEecCC---------------------CEEEEEeccccCC
Confidence            577999999999997655                     5999999877553

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=93.00  E-value=0.2  Score=57.02  Aligned_cols=160  Identities=19%  Similarity=0.193  Sum_probs=88.0

Q ss_pred             EEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccc
Q 013230          249 YIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVR  324 (447)
Q Consensus       249 ~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~  324 (447)
                      .+..++|.. .++...+.    .+...++.+..+++.||+|+|+ .       +-+|+.+.....         +.....
T Consensus       262 ~v~~~~~s~-~~~~~~~q~v~~i~~~~~r~~~~~~~~GL~~~h~-~-------~l~~v~L~~s~~---------~~~~~~  323 (1351)
T KOG1035|consen  262 DVLQEICSK-VELRSLLQSVGSIPLETLRILHQKLLEGLAYLHS-L-------SLEHVVLSASSS---------KESTVD  323 (1351)
T ss_pred             HHHHhhcCc-cchHHHHhhccccCHHHHHHHHHHHhhhHHHHHH-h-------ccceeEEecccc---------cccccC
Confidence            344566653 35555544    8899999999999999999999 5       455555554421         000001


Q ss_pred             cCCCcEEEe--eccceeecCCCCEEEE----ecCCCCCCCCCCCCCchH--HHHHhhccCCcccccCCCC-CChhHHHHH
Q 013230          325 TFGLSVTII--DFTLSRINTGEDIFFL----DLSQDPELFSGPKGDKQF--DTYRKMKKVTEDQWEGSFP-KTNVLWLVY  395 (447)
Q Consensus       325 ~~~~~vkL~--DFGla~~~~~~g~i~~----~~~~~pelf~g~~~~~~~--di~s~lg~~~~~~~~~~~p-~~~~~~~~~  395 (447)
                      ..+ .+.+.  ||+.++.......-+.    +.+.+++.........+.  ++|. +|........+..+ ........+
T Consensus       324 ~e~-~~~~sl~~~~ss~~l~d~~~~~~~~~~~~~~~~e~~~~~~~~~~r~~dL~~-lgll~~~~~~~~~i~~~~~~~~~~  401 (1351)
T KOG1035|consen  324 GEG-VVAISLSDFDSSKPLPDNEKSFSDLLAEIRNADEDLKENTAKKSRLTDLWC-LGLLLLQLSQGEDISEKSAVPVSL  401 (1351)
T ss_pred             ccc-eeecchhhhcccccCCCcccchhhcCccccccccccccccchhhhhhHHHH-HHHHHhhhhhcCcccccccchhhh
Confidence            111 34444  8888877655533222    223344444444444443  7777 55443333332211 111111000


Q ss_pred             HHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCC
Q 013230          396 LVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSD  440 (447)
Q Consensus       396 ~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~  440 (447)
                                .+. ...+ +..+++.+|+.-+     ++.+++.|||.+.
T Consensus       402 ----------l~~-~~~~-~~~d~~~~~~~~~~~~Rl~~~~ll~~~f~~~  439 (1351)
T KOG1035|consen  402 ----------LDV-LSTS-ELLDALPKCLDEDSEERLSALELLTHPFLRF  439 (1351)
T ss_pred             ----------hcc-ccch-hhhhhhhhhcchhhhhccchhhhhhchhccc
Confidence                      110 1111 6788899999766     9999999999863

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=92.99  E-value=1.3  Score=44.86  Aligned_cols=75  Identities=20%  Similarity=0.152  Sum_probs=58.0

Q ss_pred             eEEEEEEecCccchhh-hhc---CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCccccc
Q 013230          248 RYIVFVLQHGGKDLES-FVL---LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFV  323 (447)
Q Consensus       248 ~~ivmE~~~gG~~L~~-~i~---l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~  323 (447)
                      -.+||+|+- +..... .++   ++...++.+-.|++.-+.-|-..|++||.||.-=|+|+...                
T Consensus       239 hVLVM~FlG-rdgw~aPkLKd~~ls~~ka~~~Y~~~v~~MR~lY~~c~LVHADLSEfN~LyhdG----------------  301 (520)
T KOG2270|consen  239 HVLVMEFLG-RDGWAAPKLKDASLSTSKARELYQQCVRIMRRLYQKCRLVHADLSEFNLLYHDG----------------  301 (520)
T ss_pred             ceEeeeecc-CCCCcCcccccccCChHHHHHHHHHHHHHHHHHHHHhceeccchhhhhheEECC----------------
Confidence            468999994 311111 111   88889999999999999998766999999999999999887                


Q ss_pred             ccCCCcEEEeeccceeecCCC
Q 013230          324 RTFGLSVTIIDFTLSRINTGE  344 (447)
Q Consensus       324 ~~~~~~vkL~DFGla~~~~~~  344 (447)
                           .+.|||-+-|.....+
T Consensus       302 -----~lyiIDVSQSVE~DHP  317 (520)
T KOG2270|consen  302 -----KLYIIDVSQSVEHDHP  317 (520)
T ss_pred             -----EEEEEEccccccCCCh
Confidence                 6999999877654443

>PRK10271 thiK thiamine kinase; Provisional

Probab=92.14  E-value=0.11  Score=47.58  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=26.9

Q ss_pred             CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCC
Q 013230          290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG  343 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~  343 (447)
                      .-.+|.|+.|+||++..++                     ++|+||+.|.....
T Consensus        77 ~~p~H~D~~~~N~~~~~~~---------------------~~lIDwe~a~~gDp  109 (188)
T PRK10271         77 LAPLHMDVHAGNLVHSASG---------------------LRLIDWEYAGDGDI  109 (188)
T ss_pred             eeeecCCCCCccEEEECCC---------------------EEEEeCCcccCCCH
Confidence            3569999999999988764                     88999998876443

>PLN02236 choline kinase

Probab=91.27  E-value=0.26  Score=49.67  Aligned_cols=34  Identities=32%  Similarity=0.706  Sum_probs=28.0

Q ss_pred             CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC
Q 013230          290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT  342 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~  342 (447)
                      ..++|+|+++.|||++....                   .+.|+||..|....
T Consensus       200 ~~~cH~Dl~~~Nil~~~~~~-------------------~~~lID~Eya~~~~  233 (344)
T PLN02236        200 IGFCHNDLQYGNIMIDEETR-------------------AITIIDYEYASYNP  233 (344)
T ss_pred             ceEEeCCCCcCcEEEeCCCC-------------------cEEEEeehhccccc
Confidence            57899999999999986432                   69999999887644

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=91.19  E-value=0.19  Score=46.72  Aligned_cols=32  Identities=38%  Similarity=0.675  Sum_probs=20.9

Q ss_pred             CCeeeccCCCCCEEE-ecCCCccccccccCcccccccCCCcEEEeeccceeec
Q 013230          290 YEFEHRDLHWGNVLL-SRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRIN  341 (447)
Q Consensus       290 ~~iiHrDLKpeNILl-~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~  341 (447)
                      .-++|.|+.|.|||+ ..++                    .++|+||-.|...
T Consensus       143 ~v~cHnDl~~~Nil~~~~~~--------------------~~~lIDfEya~~n  175 (211)
T PF01633_consen  143 LVFCHNDLNPGNILINNKDG--------------------EVKLIDFEYAGYN  175 (211)
T ss_dssp             EEEE-S--SGGGEEETSSSS--------------------CEEE--GTT-EEE
T ss_pred             ceEeeccCccccEEeccCCC--------------------eEEEecHHHHhhc
Confidence            578999999999999 4444                    7999999887653

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=91.12  E-value=1.1  Score=44.17  Aligned_cols=45  Identities=20%  Similarity=0.129  Sum_probs=31.4

Q ss_pred             cceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccc
Q 013230          135 ENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNH  190 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h  190 (447)
                      +..+.+|.|....+|+..    .+.+|+-...           ....+..|..=|+.|..
T Consensus        20 ~~~~~v~GG~i~~a~~~~~~~~~~FvK~~~~~-----------~~~~f~~Ea~gL~~L~~   68 (288)
T PF03881_consen   20 TSIEPVSGGDINEAYRLDTDGGSYFVKVNSES-----------GRDMFEGEAEGLKALAE   68 (288)
T ss_dssp             -EEEEE--SSSSEEEEEETTS-EEEEEEEEGG-----------GCCHHHHHHHHHHHHCH
T ss_pred             eeeEecCCCChhheEEEECCCccEEEEecChh-----------hHHHHHHHHHHHHHHHh
Confidence            566889999999999876    4888876521           22467889998888854

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=90.04  E-value=0.25  Score=48.21  Aligned_cols=34  Identities=26%  Similarity=0.504  Sum_probs=27.2

Q ss_pred             CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC
Q 013230          290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT  342 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~  342 (447)
                      ..++|+|++|+|||++.++.                   ..-|+||+.+....
T Consensus       185 ~~lvHGD~~~~Nilv~~~~~-------------------~~gviDWe~a~iGD  218 (276)
T cd05152         185 TVLVHGDLHPGHILIDEDAR-------------------VTGLIDWTEAKVGD  218 (276)
T ss_pred             CeeEeCCCCCCcEEEeCCCC-------------------EEEEECcHhcccCC
Confidence            45899999999999997441                   45799999887643

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=90.04  E-value=0.4  Score=48.11  Aligned_cols=30  Identities=33%  Similarity=0.426  Sum_probs=25.4

Q ss_pred             eeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceee
Q 013230          292 FEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRI  340 (447)
Q Consensus       292 iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~  340 (447)
                      +||.|+.|.|||++.+..                   .+.++|||-++.
T Consensus       199 iIH~D~~~~NVl~d~~~~-------------------~~g~iDFdDa~~  228 (331)
T COG2334         199 IIHGDLHPDNVLFDDDTD-------------------VSGFIDFDDAGY  228 (331)
T ss_pred             eeecCCCccceeEcCCCC-------------------eeeEEEcccccc
Confidence            999999999999999861                   378999996543

>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]

Probab=89.20  E-value=0.52  Score=45.85  Aligned_cols=55  Identities=24%  Similarity=0.318  Sum_probs=41.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHh-CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC
Q 013230          268 NINEARSLLVQVTAGLAVAEAA-YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT  342 (447)
Q Consensus       268 ~~~~~~~i~~Qil~gL~ylH~~-~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~  342 (447)
                      +...++..+..+-.++.-.+.. .-++|.|+.|+|+|.+..+                    .++|+||--|....
T Consensus       130 ~~~~~~~~~~~l~~~l~~~~~~~~v~cH~Dl~~~N~l~t~~~--------------------~l~LIDWEyAg~~D  185 (269)
T COG0510         130 DNHLLRKKLKELRRALEEVPKDDLVPCHNDLNPGNLLLTDKG--------------------GLFLIDWEYAGLND  185 (269)
T ss_pred             hhHHHHHHHHHHHHHhhhcCCCceeeecCCCCccceEEcCCC--------------------cEEEEecccCCCcc
Confidence            4445555666666677666653 4699999999999999966                    69999998776543

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=89.17  E-value=1.3  Score=41.87  Aligned_cols=61  Identities=10%  Similarity=-0.018  Sum_probs=42.2

Q ss_pred             ceEEEEEEecCccchhhhhcCCHHHHHHHHHHHHHHHHHHH-HhCCeeeccCCCCCEEEecCCCccccccccCccccccc
Q 013230          247 QRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAE-AAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRT  325 (447)
Q Consensus       247 ~~~ivmE~~~gG~~L~~~i~l~~~~~~~i~~Qil~gL~ylH-~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~  325 (447)
                      .+-++.|+|..=..+      +   .- ++.-=+.+|.-.| +..+.+|+|..|+||+-+..|                 
T Consensus       128 ~yGvIlE~Cy~~~i~------~---~N-~i~agi~~L~~fH~~~~~~lHGD~np~NiM~D~~G-----------------  180 (308)
T PF07387_consen  128 KYGVILERCYKIKIN------F---SN-FITAGIKDLMDFHSENQHCLHGDCNPDNIMCDKFG-----------------  180 (308)
T ss_pred             eeEEEEeeccCcccc------h---hH-HHHHhHHHHHHhhccCCCeecCCCChhheeecCCC-----------------
Confidence            366889999721111      1   11 1111246677788 447899999999999999998                 


Q ss_pred             CCCcEEEeeccc
Q 013230          326 FGLSVTIIDFTL  337 (447)
Q Consensus       326 ~~~~vkL~DFGl  337 (447)
                         .+||.|=+.
T Consensus       181 ---~lKlVDP~~  189 (308)
T PF07387_consen  181 ---YLKLVDPVC  189 (308)
T ss_pred             ---CEEecChhh
Confidence               799999764

The function of this family is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	447
2wb8_A	352	Crystal Structure Of Haspin Kinase Length = 352		3e-42
3dlz_A	357	Crystal Structure Of Human Haspin In Complex With A		4e-42
2vuw_A	336	Structure Of Human Haspin Kinase Domain Length = 33		2e-40

>pdb|2WB8|A Chain A, Crystal Structure Of Haspin Kinase Length = 352

Iteration: 1
 Score =  169 bits (427), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/295 (35%), Positives = 161/295 (54%), Gaps = 11/295 (3%)
Query: 139 KVGEGTFGEAF--LAGNT--VCKVVPIDGDLKVNGEAQKKSXXXXXXXXXSWTLNHLRRN 194
           K+GEG FGE F  +A +T    K++ I+G   VNG  QK           S  L+ L   
Sbjct: 43  KIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLL--- 99
Query: 195 EGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVL 254
            G+  N    F+ +  +   QG Y   L++AW+ ++    S ND P  F ++Q +IV   
Sbjct: 100 SGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEF 159
Query: 255 QHGGKDLESFV--LLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTM 312
           + GG DLE     L ++  A+S+L Q+TA LAVAEA+  FEHRDLHWGNVLL +     +
Sbjct: 160 EFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKKTSLKKL 219
Query: 313 NFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQFDTYRK 372
           ++ L+GK   + + GL V+IID+TLSR+     + F D+S D +LF+G  GD QFD YR 
Sbjct: 220 HYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTG-DGDYQFDIYRL 278
Query: 373 MKKVTEDQWEGSFPKTNXXXXXXXXXXXXXKKTFDRSSKDERDLRSLKKRLDKYN 427
           MKK   ++W    P +N             + TF ++  +   ++ +K+++ +++
Sbjct: 279 MKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTF-KTKCNTPAMKQIKRKIQEFH 332

>pdb|3DLZ|A Chain A, Crystal Structure Of Human Haspin In Complex With Amp Length = 357

Iteration: 1
 Score =  169 bits (427), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 105/295 (35%), Positives = 161/295 (54%), Gaps = 11/295 (3%)
Query: 139 KVGEGTFGEAF--LAGNT--VCKVVPIDGDLKVNGEAQKKSXXXXXXXXXSWTLNHLRRN 194
           K+GEG FGE F  +A +T    K++ I+G   VNG  QK           S  L+ L   
Sbjct: 48  KIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLL--- 104
Query: 195 EGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVL 254
            G+  N    F+ +  +   QG Y   L++AW+ ++    S ND P  F ++Q +IV   
Sbjct: 105 SGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEF 164
Query: 255 QHGGKDLESFV--LLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTM 312
           + GG DLE     L ++  A+S+L Q+TA LAVAEA+  FEHRDLHWGNVLL +     +
Sbjct: 165 EFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKKTSLKKL 224
Query: 313 NFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQFDTYRK 372
           ++ L+GK   + + GL V+IID+TLSR+     + F D+S D +LF+G  GD QFD YR 
Sbjct: 225 HYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTG-DGDYQFDIYRL 283
Query: 373 MKKVTEDQWEGSFPKTNXXXXXXXXXXXXXKKTFDRSSKDERDLRSLKKRLDKYN 427
           MKK   ++W    P +N             + TF ++  +   ++ +K+++ +++
Sbjct: 284 MKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTF-KTKCNTPAMKQIKRKIQEFH 337

>pdb|2VUW|A Chain A, Structure Of Human Haspin Kinase Domain Length = 336

Iteration: 1
 Score =  163 bits (413), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 101/257 (39%), Positives = 144/257 (56%), Gaps = 10/257 (3%)
Query: 139 KVGEGTFGEAF--LAGNT--VCKVVPIDGDLKVNGEAQKKSXXXXXXXXXSWTLNHLRRN 194
           K+GEG FGE F  +A +T    K++ I+G   VNG  QK           S  L+ L   
Sbjct: 27  KIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLL--- 83
Query: 195 EGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVL 254
            G+  N    F+ +  +   QG Y   L++AW+ ++    S ND P  F ++Q +IV   
Sbjct: 84  SGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEF 143
Query: 255 QHGGKDLESFV--LLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTM 312
           + GG DLE     L ++  A+S+L Q+TA LAVAEA+  FEHRDLHWGNVLL +     +
Sbjct: 144 EFGGIDLEQXRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKKTSLKKL 203
Query: 313 NFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQFDTYRK 372
           ++ L+GK   + + GL V+IID+TLSR+     + F D+S D +LF+G  GD QFD YR 
Sbjct: 204 HYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSXDEDLFTG-DGDYQFDIYRL 262
Query: 373 MKKVTEDQWEGSFPKTN 389
            KK   ++W    P +N
Sbjct: 263 XKKENNNRWGEYHPYSN 279

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	447
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	3e-88
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
2a19_B	284	Interferon-induced, double-stranded RNA-activated	4e-06
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	5e-04
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	5e-04
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	6e-04

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score =  271 bits (694), Expect = 3e-88
 Identities = 118/335 (35%), Positives = 176/335 (52%), Gaps = 17/335 (5%)

Query: 116 VDHSAPTKLLDLFSKYSDPENIVKVGEGTFGEAFLAGNT----VCKVVPIDGDLKVNGEA 171
                P             +   K+GEG FGE F           K++ I+G   VNG  
Sbjct: 5   CSQKGPVPFSHCLPT-EKLQRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSH 63

Query: 172 QKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDD 231
           QK  EE+L E+++S  L+ L    G+  N    F+ +  +   QG Y   L++AW+ ++ 
Sbjct: 64  QKTFEEILPEIIISKELSLLS---GEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNS 120

Query: 232 KHCSENDNPKEFPENQRYIVFVLQHGGKDLESFV--LLNINEARSLLVQVTAGLAVAEAA 289
              S ND P  F ++Q +IV   + GG DLE     L ++  A+S+L Q+TA LAVAEA+
Sbjct: 121 TKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEAS 180

Query: 290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFL 349
             FEHRDLHWGNVLL +     +++ L+GK   + + GL V+IID+TLSR+     + F 
Sbjct: 181 LRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFC 240

Query: 350 DLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTF--- 406
           D+S D +LF+G  GD QFD YR MKK   ++W    P +NVLWL YL D +L + TF   
Sbjct: 241 DVSMDEDLFTG-DGDYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTK 299

Query: 407 ---DRSSKDERDLRSLKKRLDKYNSAKEAIFDPFF 438
                  + +R ++   + +  ++SA + +     
Sbjct: 300 CNTPAMKQIKRKIQEFHRTMLNFSSATDLLCQHSL 334

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 4e-09
 Identities = 72/507 (14%), Positives = 150/507 (29%), Gaps = 137/507 (27%)

Query: 6   DTVPIPHLCSRLEKWLLS-KKFNY-------SCGPSSTLSKILETPYRNLESLQGEVNFS 57
             V       +L + LL  +             G  + +   L+    +   +Q +++F 
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-KTWV--ALDV-CLS-YKVQCKMDFK 183

Query: 58  I--LSTPKKSSFKDTSDV-----HERDINSQKSNAVSESVKNESCEDIEVAVKKLSLAST 110
           I  L+    +S +   ++     ++ D N    +  S ++K      I+  +++      
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-LRIHSIQAELRR------ 236

Query: 111 SASLVVDHSAPTKLLDLFSKYSDPENIVKVGEGTFGEAFLAGNTVCKVVPIDGDLKV--N 168
              L+        LL L     + +            AF      CK++      +V   
Sbjct: 237 ---LLKSKPYENCLLVL-LNVQNAKAW---------NAFNLS---CKILLTTRFKQVTDF 280

Query: 169 GEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM--FEIK--VCQG-PYDAALI 223
             A   +   L+   ++ T         +  +    +++    ++   V    P   ++I
Sbjct: 281 LSAATTTHISLDHHSMTLT-------PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 224 QA--------WEDWD----DKH------CSENDNPKE----------FPENQRYIVFVLQ 255
                     W++W     DK             P E          FP +      +L 
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393

Query: 256 ---HGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTM 312
                    +  V++N     SL+ +        E+        ++   + +   +   +
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEK-----QPKESTISI-P-SIYL-ELKVKLENEYAL 445

Query: 313 NFLLDGKQMFVRTF---GLSVTIID---FT-----LSRINTGE--DIF---FLDLSQDPE 356
           +  +       +TF    L    +D   ++     L  I   E   +F   FLD      
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---- 501

Query: 357 LFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTF-DRSSKDERD 415
            F            +K++  +   W  S    N      L  +   K    D   K ER 
Sbjct: 502 -FLE----------QKIRHDST-AWNASGSILNT-----LQQLKFYKPYICDNDPKYERL 544

Query: 416 LRSLKKRLDKYNSAKEAIFDPFFSDLI 442
           + ++   L K       I    ++DL+
Sbjct: 545 VNAILDFLPKIEE--NLICSK-YTDLL 568

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 36/186 (19%), Positives = 57/186 (30%), Gaps = 48/186 (25%)

Query: 135 ENIVKVGEGTFGEAFLAGNTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRN 194
           + I  +G G FG+ F A +       IDG   V    +  +E+   EV     L+H    
Sbjct: 14  KEIELIGSGGFGQVFKAKHR------IDGKTYVIKRVKYNNEKAEREVKALAKLDH---- 63

Query: 195 EGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVL 254
                                          W+ +D    + + N         +I    
Sbjct: 64  ----------------------VNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEF 101

Query: 255 QHGGKDLESFV------LLNINEARSLLVQVTAGLAVAEAAY----EFEHRDLHWGNVLL 304
              G  LE ++       L+   A  L  Q+T G+      Y    +  +RDL   N+ L
Sbjct: 102 CDKG-TLEQWIEKRRGEKLDKVLALELFEQITKGVD-----YIHSKKLINRDLKPSNIFL 155

Query: 305 SRNDSV 310
                V
Sbjct: 156 VDTKQV 161

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 25/207 (12%), Positives = 47/207 (22%), Gaps = 52/207 (25%)

Query: 141 GEGTFGEAFLA-----GNTV-CKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRN 194
             G     FL            KV  +  +       + + E L E    +  L     +
Sbjct: 71  RVGDRSVVFLVRDVERLEDFALKVFTMGAENS-----RSELERLHEATFAAARLLG--ES 123

Query: 195 EGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVL 254
             +  +     +    + V   P  A L    +D+   +                ++   
Sbjct: 124 PEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVAN--------------YLLLMPA 169

Query: 255 QHGGKDLESFV-----------LLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVL 303
                DLE                 I     L  Q+    A  ++     H      N+ 
Sbjct: 170 ASV--DLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQS-KGLVHGHFTPDNLF 226

Query: 304 LSRNDSVTMNFLLDGKQMFVRTFGLSV 330
           +  +  +    L D             
Sbjct: 227 IMPDGRL---MLGD--------VSALW 242

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 37/221 (16%), Positives = 59/221 (26%), Gaps = 51/221 (23%)

Query: 140 VGEGTFGEAFLA-----GNTV-CKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRR 193
           +G+        A     G +    V         N   Q K E L            L R
Sbjct: 86  LGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLR---------LLR 136

Query: 194 NEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFV 253
              +   A      +F   + + P    +I+   D  D                R+ ++ 
Sbjct: 137 GIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLS-----------RFFLYP 185

Query: 254 LQHGGKDLESFV-----------LLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNV 302
                 +L++F             L  +    L +QV   LA         H  L   ++
Sbjct: 186 RMQS--NLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY-GLVHTYLRPVDI 242

Query: 303 LLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG 343
           +L +   V   FL          F   V      +S I  G
Sbjct: 243 VLDQRGGV---FLTG--------FEHLVRDGASAVSPIGRG 272

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 26/133 (19%)

Query: 245 ENQRYIV--FVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLH 298
           + Q Y+    +    G DL + +     L    A +++ Q+ + L  A AA    HRD+ 
Sbjct: 106 DGQLYVDMRLI---NGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHAA-GATHRDVK 161

Query: 299 WGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLD-LSQDPEL 357
             N+L+S +D     +L+D        FG++    D  L++   G  +  L  ++  PE 
Sbjct: 162 PENILVSADDFA---YLVD--------FGIASATTDEKLTQ--LGNTVGTLYYMA--PER 206

Query: 358 FSGPKGDKQFDTY 370
           FS      + D Y
Sbjct: 207 FSESHATYRADIY 219

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	447
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.98
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.98
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.98
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.98
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.98
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.98
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.98
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.98
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.98
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.98
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.98
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.98
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.98
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.98
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.98
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.98
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.98
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.98
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.97
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.97
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.97
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.97
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.97
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.97
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.97
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.97
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.97
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.97
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.97
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.97
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.97
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.97
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.97
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.97
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.97
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.97
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.97
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.97
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.97
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.97
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.97
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.97
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.97
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.97
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.97
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.97
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.97
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.97
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.97
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.97
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.97
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.97
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.97
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.97
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.97
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.97
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.97
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.97
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.97
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.97
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.97
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.97
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.97
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.97
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.97
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.97
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.97
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.97
3uqc_A	286	Probable conserved transmembrane protein; structur	99.96
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.96
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.93
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.88
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.87
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.82
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.69
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.17
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.13
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	99.0
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.57
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.53
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.34
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.1
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.09
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	98.07
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.9
3ats_A	357	Putative uncharacterized protein; hypothetical pro	97.85
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	97.8
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	97.66
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	97.16
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	97.13
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.66
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	96.64
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	96.22
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	96.17
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	96.08
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	95.7
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	91.86
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	90.23
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	89.3
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	88.86
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	81.49

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=9.9e-50  Score=392.69  Aligned_cols=240  Identities=20%  Similarity=0.225  Sum_probs=204.4

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||+||+|++      ||+|++.+...     ......+.+.+|+.+|+.|+|        ||    ||
T Consensus        33 dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~-----~~~~~~~~~~~E~~il~~l~H--------pn----Iv   95 (311)
T 4aw0_A           33 DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHI-----IKENKVPYVTRERDVMSRLDH--------PF----FV   95 (311)
T ss_dssp             GEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHH-----HHTTCHHHHHHHHHHHTTCCC--------TT----BC
T ss_pred             ccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHC-----CCHHHHHHHHHHHHHHHhCCC--------CC----CC
Confidence            459999999999999999974      99999985422     223345778999999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      +++++|..                              ++.+|||||||.|| +|.+++.    +++.+++.++.||+.|
T Consensus        96 ~l~~~~~~------------------------------~~~~yivmEy~~gG-~L~~~i~~~~~l~e~~~~~~~~qi~~a  144 (311)
T 4aw0_A           96 KLYFTFQD------------------------------DEKLYFGLSYAKNG-ELLKYIRKIGSFDETCTRFYTAEIVSA  144 (311)
T ss_dssp             CEEEEEEC------------------------------SSEEEEEECCCTTE-EHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             eEEEEEEe------------------------------CCEEEEEEecCCCC-CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            99999643                              67799999999999 9999986    9999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-------CEEEEecCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-------DIFFLDLSQDP  355 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-------g~i~~~~~~~p  355 (447)
                      |+|||+ +|||||||||+|||++.++                    .+||+|||+|+.....       ..+.+..|++|
T Consensus       145 l~ylH~-~~IiHRDlKPeNILl~~~g--------------------~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmAP  203 (311)
T 4aw0_A          145 LEYLHG-KGIIHRDLKPENILLNEDM--------------------HIQITDFGTAKVLSPESKQARANSFVGTAQYVSP  203 (311)
T ss_dssp             HHHHHH-TTEECSCCSGGGEEECTTS--------------------CEEECCCTTCEECCTTTTCCCBCCCCSCGGGCCH
T ss_pred             HHHHHH-CCCccCCCCHHHeEEcCCC--------------------CEEEEEcCCceecCCCCCcccccCcccCcccCCH
Confidence            999999 9999999999999999987                    7999999999976432       22355679999


Q ss_pred             CCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      |++.+..++...|||+ +|++.+++.+|..||...........++...  +..+..++++++|||++||++|     ||+
T Consensus       204 Evl~~~~y~~~~DiWS-lGvilyeml~G~~PF~~~~~~~~~~~i~~~~--~~~p~~~s~~~~dli~~lL~~dp~~R~t~~  280 (311)
T 4aw0_A          204 ELLTEKSACKSSDLWA-LGCIIYQLVAGLPPFRAGNEGLIFAKIIKLE--YDFPEKFFPKARDLVEKLLVLDATKRLGCE  280 (311)
T ss_dssp             HHHHHSCBCHHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHTC--CCCCTTCCHHHHHHHHHHSCSSGGGSTTSG
T ss_pred             HHHcCCCCCcHHHHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHcCC--CCCCcccCHHHHHHHHHHccCCHhHCcChH
Confidence            9999988888889999 9999999999999997765555556666433  4445679999999999999999     777


Q ss_pred             H------HHcCCCCCCCCCC
Q 013230          431 E------AIFDPFFSDLIVD  444 (447)
Q Consensus       431 e------lL~HPff~~~~~~  444 (447)
                      |      +++||||+++..+
T Consensus       281 e~~~~~~i~~Hp~F~~idw~  300 (311)
T 4aw0_A          281 EMEGYGPLKAHPFFESVTWE  300 (311)
T ss_dssp             GGTCHHHHHTSGGGTTCCCT
T ss_pred             HHcCCHHHHCCCCcCCCCHH
Confidence            6      6899999988654

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=9.1e-49  Score=391.27  Aligned_cols=238  Identities=23%  Similarity=0.298  Sum_probs=201.9

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+++++||+|+||+||+|++      ||||++.....        ...+.+.+|+.+|+.|+|        ||    ||+
T Consensus        76 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~--------~~~~~~~~Ei~il~~l~H--------pn----IV~  135 (346)
T 4fih_A           76 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQ--------QRRELLFNEVVIMRDYQH--------EN----VVE  135 (346)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGC--------SSGGGGHHHHHHHHHCCC--------TT----BCC
T ss_pred             cEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCch--------hHHHHHHHHHHHHHhCCC--------CC----CCc
Confidence            49999999999999999974      99999975422        233567899999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~  284 (447)
                      ++++|..                              ++.+|||||||+|| +|.+++.   +++.+++.++.||+.||+
T Consensus       136 l~~~~~~------------------------------~~~~~ivmEy~~gg-~L~~~l~~~~l~e~~~~~~~~qi~~aL~  184 (346)
T 4fih_A          136 MYNSYLV------------------------------GDELWVVMEFLEGG-ALTDIVTHTRMNEEQIAAVCLAVLQALS  184 (346)
T ss_dssp             EEEEEEE------------------------------TTEEEEEECCCTTE-EHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEE------------------------------CCEEEEEEeCCCCC-cHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            9999765                              56799999999999 9999887   999999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPELFS  359 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pelf~  359 (447)
                      |||+ +|||||||||+||||+.++                    .+||+|||+|+.....     ..+....|++||++.
T Consensus       185 ylH~-~~IiHRDlKp~NILl~~~g--------------------~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~  243 (346)
T 4fih_A          185 VLHA-QGVIHRDIKSDSILLTHDG--------------------RVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELIS  243 (346)
T ss_dssp             HHHH-TTEECCCCSGGGEEECTTC--------------------CEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHT
T ss_pred             HHHH-CCcccccCCHHHEEECCCC--------------------CEEEecCcCceecCCCCCcccccccCcCcCCHHHHC
Confidence            9999 9999999999999999988                    7999999999876543     224456699999999


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh-ccCCCCCccchHHHHHHHHHhcccc-----CHHHHH
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL-KKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAI  433 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~-~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL  433 (447)
                      +..++...|||+ +|++.+++..|..||.+......+..+... ...++.+..+|++++|||++||++|     ||+|+|
T Consensus       244 ~~~y~~~~DiWS-lGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l  322 (346)
T 4fih_A          244 RLPYGPEVDIWS-LGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELL  322 (346)
T ss_dssp             TCCBCTHHHHHH-HHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHT
T ss_pred             CCCCCcHHHHHH-HHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHcCCChhHCcCHHHHh
Confidence            988888889999 999999999999999776544444443321 1233445678999999999999999     999999


Q ss_pred             cCCCCCCCCCC
Q 013230          434 FDPFFSDLIVD  444 (447)
Q Consensus       434 ~HPff~~~~~~  444 (447)
                      +||||++...+
T Consensus       323 ~Hp~~~~~~~p  333 (346)
T 4fih_A          323 KHPFLAKAGPP  333 (346)
T ss_dssp             TCGGGGGCCCG
T ss_pred             cCHhhcCCCCC
Confidence            99999876443

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=6.9e-48  Score=394.15  Aligned_cols=237  Identities=23%  Similarity=0.298  Sum_probs=203.5

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+++++||+|+||.||+|++      ||||++.....        ...+.+.+|+.+|+.|+|        ||    ||+
T Consensus       153 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~--------~~~~~~~~Ei~il~~l~H--------pn----IV~  212 (423)
T 4fie_A          153 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQ--------QRRELLFNEVVIMRDYQH--------EN----VVE  212 (423)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTC--------SSGGGHHHHHHHHHHCCC--------TT----BCC
T ss_pred             cEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccch--------hHHHHHHHHHHHHHhCCC--------CC----CCc
Confidence            59999999999999999984      99999975432        233568999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~  284 (447)
                      ++++|..                              ++.+|||||||.|| +|.+++.   +++.+++.++.||+.||+
T Consensus       213 l~~~~~~------------------------------~~~~~iVmEy~~gG-~L~~~i~~~~l~e~~~~~~~~qil~aL~  261 (423)
T 4fie_A          213 MYNSYLV------------------------------GDELWVVMEFLEGG-ALTDIVTHTRMNEEQIAAVCLAVLQALS  261 (423)
T ss_dssp             EEEEEEE------------------------------TTEEEEEEECCTTE-EHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEE------------------------------CCEEEEEEeCCCCC-cHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            9999765                              56799999999999 9999987   999999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPELFS  359 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pelf~  359 (447)
                      |||+ +|||||||||+||||+.++                    .+||+|||+|+.....     ..+....||+||++.
T Consensus       262 ylH~-~~IiHRDiKp~NILl~~~g--------------------~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~  320 (423)
T 4fie_A          262 VLHA-QGVIHRDIKSDSILLTHDG--------------------RVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELIS  320 (423)
T ss_dssp             HHHH-TTEECCCCSTTTEEECTTC--------------------CEEECCCTTCEECCSSCCCBCCCEECTTTCCHHHHT
T ss_pred             HHHH-CCeecccCCHHHEEEcCCC--------------------CEEEecCccceECCCCCccccccccCcCcCCHHHHC
Confidence            9999 9999999999999999988                    7999999999876543     345677799999999


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc-cCCCCCccchHHHHHHHHHhcccc-----CHHHHH
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK-KTFDRSSKDERDLRSLKKRLDKYN-----SAKEAI  433 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~-~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL  433 (447)
                      +..++...|||+ +|++.++++.|..||.+......+..+.... ..++.+..+|++++|||++||++|     ||+|+|
T Consensus       321 ~~~y~~~~DiWS-lGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell  399 (423)
T 4fie_A          321 RLPYGPEVDIWS-LGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELL  399 (423)
T ss_dssp             TCCBCTHHHHHH-HHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHT
T ss_pred             CCCCCcHHHHHH-HHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHh
Confidence            988888899999 9999999999999998765544444443221 234445678999999999999999     999999


Q ss_pred             cCCCCCCCCC
Q 013230          434 FDPFFSDLIV  443 (447)
Q Consensus       434 ~HPff~~~~~  443 (447)
                      +||||+....
T Consensus       400 ~Hp~~~~~~~  409 (423)
T 4fie_A          400 KHPFLAKAGP  409 (423)
T ss_dssp             TCGGGGGCCC
T ss_pred             cCHHhcCCCC
Confidence            9999987543

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=1.9e-48  Score=389.60  Aligned_cols=237  Identities=23%  Similarity=0.242  Sum_probs=197.3

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+++++||+|+||+||+|++      ||||++.....      .....+.+.+|+.+|++|+|        ||    ||
T Consensus        25 ~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~------~~~~~~~~~~E~~il~~l~H--------pn----IV   86 (350)
T 4b9d_A           25 KYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRM------SSKEREESRREVAVLANMKH--------PN----IV   86 (350)
T ss_dssp             CEEEEEEC------CEEEEEETTTCCEEEEEEEECTTS------CHHHHHHHHHHHHHHHHCCC--------TT----BC
T ss_pred             ceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHC------CHHHHHHHHHHHHHHHHCCC--------CC----CC
Confidence            459999999999999999974      99999986532      23345778999999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVT  280 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil  280 (447)
                      +++++|..                              ++.+|||||||+|| +|.+++.      +++.+++.|+.||+
T Consensus        87 ~~~~~~~~------------------------------~~~~yiVmEy~~gg-~L~~~i~~~~~~~~~e~~~~~~~~qi~  135 (350)
T 4b9d_A           87 QYRESFEE------------------------------NGSLYIVMDYCEGG-DLFKRINAQKGVLFQEDQILDWFVQIC  135 (350)
T ss_dssp             CEEEEEEE------------------------------TTEEEEEEECCTTC-BHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred             cEEEEEEE------------------------------CCEEEEEEeCCCCC-cHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            99999754                              56799999999999 9999884      78999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDP  355 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~p  355 (447)
                      .||+|||+ +|||||||||+||||+.++                    .+||+|||+|+.....     .++....|++|
T Consensus       136 ~aL~ylH~-~~IiHRDlKp~NILl~~~g--------------------~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAP  194 (350)
T 4b9d_A          136 LALKHVHD-RKILHRDIKSQNIFLTKDG--------------------TVQLGDFGIARVLNSTVELARACIGTPYYLSP  194 (350)
T ss_dssp             HHHHHHHH-TTCEETTCCGGGEEECTTC--------------------CEEECSTTEESCCCHHHHHHHHHHSCCTTCCH
T ss_pred             HHHHHHHH-CCeeeccCCHHHEEECCCC--------------------CEEEcccccceeecCCcccccccCCCccccCH
Confidence            99999999 9999999999999999987                    7999999999976543     23456679999


Q ss_pred             CCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      |++.+..++...|||+ +|++.+++++|..||........+..++.. ...+.+..+++++++||++||++|     ||+
T Consensus       195 E~l~~~~y~~~~DiwS-lGvilyemltG~~PF~~~~~~~~~~~i~~~-~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~  272 (350)
T 4b9d_A          195 EICENKPYNNKSDIWA-LGCVLYELCTLKHAFEAGSMKNLVLKIISG-SFPPVSLHYSYDLRSLVSQLFKRNPRDRPSVN  272 (350)
T ss_dssp             HHHTTCCCCHHHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHHT-CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HHHCCCCCCcHHHHHH-HHHHHHHHHHCCCCCCCcCHHHHHHHHHcC-CCCCCCccCCHHHHHHHHHHccCChhHCcCHH
Confidence            9999988888889999 999999999999999876555555555532 223445678999999999999999     999


Q ss_pred             HHHcCCCCCCC
Q 013230          431 EAIFDPFFSDL  441 (447)
Q Consensus       431 elL~HPff~~~  441 (447)
                      |+|+||||+.-
T Consensus       273 e~l~hp~~~~~  283 (350)
T 4b9d_A          273 SILEKGFIAKR  283 (350)
T ss_dssp             HHHTSHHHHTT
T ss_pred             HHhcCHHhhcC
Confidence            99999999753

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=8e-48  Score=373.53  Aligned_cols=235  Identities=20%  Similarity=0.254  Sum_probs=188.6

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||+||+|++      ||+|++.....     ........+.+|+.+|+.|+|        ||    ||
T Consensus        14 ~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~-----~~~~~~~~~~~Ei~il~~l~H--------pn----Iv   76 (275)
T 3hyh_A           14 NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVL-----AKSDMQGRIEREISYLRLLRH--------PH----II   76 (275)
T ss_dssp             CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC-----------CHHHHHHHHHHHHHCCC--------TT----BC
T ss_pred             CeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHc-----CCHHHHHHHHHHHHHHHHCCC--------CC----CC
Confidence            459999999999999999973      99999986532     223345678999999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      +++++|..                              ++.+||||||| +| +|.+++.    +++.+++.++.||+.|
T Consensus        77 ~~~~~~~~------------------------------~~~~~ivmEy~-~g-~L~~~l~~~~~l~e~~~~~~~~qi~~a  124 (275)
T 3hyh_A           77 KLYDVIKS------------------------------KDEIIMVIEYA-GN-ELFDYIVQRDKMSEQEARRFFQQIISA  124 (275)
T ss_dssp             CEEEEEEC------------------------------SSEEEEEEECC-CE-EHHHHHHHSCSCCHHHHHHHHHHHHHH
T ss_pred             eEEEEEEE------------------------------CCEEEEEEeCC-CC-CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            99999643                              67799999999 57 8888876    9999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDPELF  358 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~pelf  358 (447)
                      |+|||+ +||+||||||+|||++.++                    .+||+|||+|+.....    ..+.+..|++||++
T Consensus       125 l~ylH~-~~IiHRDiKP~NILl~~~~--------------------~vkl~DFGla~~~~~~~~~~~~~GT~~Y~APE~~  183 (275)
T 3hyh_A          125 VEYCHR-HKIVHRDLKPENLLLDEHL--------------------NVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVI  183 (275)
T ss_dssp             HHHHHH-TTCCCCCCCTTTEEECTTC--------------------CEEECCSSCC---------------CTTSCHHHH
T ss_pred             HHHHHH-CCcccccCChHHeEECCCC--------------------CEEEeecCCCeecCCCCccCCeeECcccCChhhh
Confidence            999999 9999999999999999987                    7999999999876543    23456779999999


Q ss_pred             CCCCCC-chHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHH
Q 013230          359 SGPKGD-KQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEA  432 (447)
Q Consensus       359 ~g~~~~-~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~el  432 (447)
                      .+..+. ...|||+ +|++.+++++|..||...........+..  ..++.+..+|++++|||++||++|     ||+|+
T Consensus       184 ~~~~y~~~~~DiwS-lGvily~lltg~~PF~~~~~~~~~~~i~~--~~~~~p~~~s~~~~~li~~~L~~dP~~R~s~~ei  260 (275)
T 3hyh_A          184 SGKLYAGPEVDVWS-CGVILYVMLCRRLPFDDESIPVLFKNISN--GVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEI  260 (275)
T ss_dssp             SSSSCCCTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHH--TCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred             cCCCCCCChhhhHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHHc--CCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence            987765 5679999 99999999999999987655555555443  334445678999999999999999     99999


Q ss_pred             HcCCCCCC
Q 013230          433 IFDPFFSD  440 (447)
Q Consensus       433 L~HPff~~  440 (447)
                      |+||||+.
T Consensus       261 l~hpw~k~  268 (275)
T 3hyh_A          261 MQDDWFKV  268 (275)
T ss_dssp             HHCHHHHT
T ss_pred             HcCccccc
Confidence            99999974

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=3.3e-48  Score=381.32  Aligned_cols=236  Identities=19%  Similarity=0.208  Sum_probs=194.8

Q ss_pred             CcceEEeccccceEEEEece---------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          134 PENIVKVGEGTFGEAFLAGN---------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~---------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      |++++.||+|+||+||+|++         ||+|++.....      .......+.+|+.+|++|+|        ||    
T Consensus        26 Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~------~~~~~~~~~~E~~il~~l~H--------pn----   87 (304)
T 3ubd_A           26 FELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATL------KVRDRVRTKMERDILVEVNH--------PF----   87 (304)
T ss_dssp             EEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEE------EEEECC------CCCCCCCC--------TT----
T ss_pred             cEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHc------ChHHHHHHHHHHHHHHHCCC--------CC----
Confidence            49999999999999999963         89999875421      11223467889999999998        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVT  280 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil  280 (447)
                      ||+++++|..                              ++.+|||||||+|| +|.+++.    +++.+++.++.||+
T Consensus        88 Iv~l~~~~~~------------------------------~~~~~ivmEy~~gg-~L~~~l~~~~~l~e~~~~~~~~qi~  136 (304)
T 3ubd_A           88 IVKLHYAFQT------------------------------EGKLYLILDFLRGG-DLFTRLSKEVMFTEEDVKFYLAELA  136 (304)
T ss_dssp             EECEEEEEEE------------------------------TTEEEEEECCCTTC-EEHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEEEE------------------------------CCEEEEEEEcCCCC-CHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            9999999654                              56799999999999 9999986    99999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDP  355 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~p  355 (447)
                      .||+|||+ +|||||||||+|||++.++                    .+||+|||+|+.....     ..+.+..|++|
T Consensus       137 ~aL~ylH~-~~IiHRDlKp~NILl~~~g--------------------~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAP  195 (304)
T 3ubd_A          137 LALDHLHS-LGIIYRDLKPENILLDEEG--------------------HIKLTDFGLSKESIDHEKKAYSFCGTVEYMAP  195 (304)
T ss_dssp             HHHHHHHH-TTCCCSSCCGGGEEECTTS--------------------CEEEESSEEEEC-----CCCCSCCCCGGGCCH
T ss_pred             HHHHHHHH-CCCcCCCCCHHHeEEcCCC--------------------CEEecccccceeccCCCccccccccCcccCCH
Confidence            99999999 9999999999999999988                    7999999999865332     23455679999


Q ss_pred             CCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C--
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S--  428 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s--  428 (447)
                      |++.+..++..+|||+ +|++.+++++|..||........+..++.  ..++.+..+|++++|||++||++|     |  
T Consensus       196 E~~~~~~y~~~~DiwS-lGvilyemltG~~PF~~~~~~~~~~~i~~--~~~~~p~~~s~~~~~li~~~L~~dP~~R~ta~  272 (304)
T 3ubd_A          196 EVVNRRGHTQSADWWS-FGVLMFEMLTGTLPFQGKDRKETMTMILK--AKLGMPQFLSPEAQSLLRMLFKRNPANRLGAG  272 (304)
T ss_dssp             HHHHTSCCCTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHH--CCCCCCTTSCHHHHHHHHHHTCSSGGGSTTCS
T ss_pred             HHhccCCCCCCCcccc-hHHHHHHHHhCCCCCCCcCHHHHHHHHHc--CCCCCCCcCCHHHHHHHHHHcccCHHHCCCCC
Confidence            9999988888889999 99999999999999987655555555553  344555779999999999999999     5  


Q ss_pred             ---HHHHHcCCCCCCCC
Q 013230          429 ---AKEAIFDPFFSDLI  442 (447)
Q Consensus       429 ---a~elL~HPff~~~~  442 (447)
                         ++|+++||||+++.
T Consensus       273 ~~~~~eil~Hp~f~~id  289 (304)
T 3ubd_A          273 PDGVEEIKRHSFFSTID  289 (304)
T ss_dssp             TTTHHHHHTSGGGTTCC
T ss_pred             cCCHHHHHcCccccCCC
Confidence               58999999999874

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=100.00  E-value=1.3e-45  Score=366.94  Aligned_cols=314  Identities=37%  Similarity=0.654  Sum_probs=255.9

Q ss_pred             CCCCcchhhhh--hccCCCcceEEeccccceEEEEece----eEEEEEecCCCcccccccccchHHHHHHHHHHHhcccc
Q 013230          118 HSAPTKLLDLF--SKYSDPENIVKVGEGTFGEAFLAGN----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHL  191 (447)
Q Consensus       118 ~~~~~~~~~~~--~~y~~~~~~~~LG~G~fG~V~~a~~----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~  191 (447)
                      +..|.++.+.+  ++|   +++++||+|+||+||+|++    ||+|++........++......+.+.+|+.+++.|+.+
T Consensus         7 ~~~~~~~~~~~~~~~y---~~~~~lG~G~~g~V~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l   83 (336)
T 2vuw_A            7 QKGPVPFSHCLPTEKL---QRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLL   83 (336)
T ss_dssp             -CCCBCHHHHSCHHHH---HTCEEEEEETTEEEEEEEETTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHG
T ss_pred             CCCCcchhhhcccccc---hheeeecccCceEEEEEEeCCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHh
Confidence            34556666544  455   9999999999999999974    99999987643222333445567899999999998743


Q ss_pred             ccCCCCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--CCH
Q 013230          192 RRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--LNI  269 (447)
Q Consensus       192 ~~~~~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--l~~  269 (447)
                      +..   ..|.|||||++.+++++.|.+++++++.++.|.....+.++.|+++..+.+|||||||.+|.+|..++.  +++
T Consensus        84 ~~~---~~~~h~niv~l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~~~~~  160 (336)
T 2vuw_A           84 SGE---VCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSL  160 (336)
T ss_dssp             GGC---SSSBCCCBCCEEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTTCCCH
T ss_pred             hcc---ccccCCchhhhcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhcCCCH
Confidence            210   022356699999999999999999999999999988888888888889999999999999956666654  899


Q ss_pred             HHHHHHHHHHHHHHHHHH-HhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEEE
Q 013230          270 NEARSLLVQVTAGLAVAE-AAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFF  348 (447)
Q Consensus       270 ~~~~~i~~Qil~gL~ylH-~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i~  348 (447)
                      ..++.++.||+.||+||| + +||+||||||+|||++.++.....+...+........+..+||+|||+|+......++.
T Consensus       161 ~~~~~i~~qi~~aL~~lH~~-~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~~~~g  239 (336)
T 2vuw_A          161 ATAKSILHQLTASLAVAEAS-LRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVF  239 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETTEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHh-CCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCCcEEE
Confidence            999999999999999999 8 99999999999999999875555566666666666667789999999999988777777


Q ss_pred             EecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC------CccchHHHHHHHHH
Q 013230          349 LDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR------SSKDERDLRSLKKR  422 (447)
Q Consensus       349 ~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~------~~~~s~~l~dLl~~  422 (447)
                      ...|++||+|.|.. +.+.|||++++++.+++|++..|+.+..|..+....+.....++.      +..++++++|||++
T Consensus       240 t~~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~  318 (336)
T 2vuw_A          240 CDVSMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRT  318 (336)
T ss_dssp             CCCTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHHHHHHHHHHHHHHTCCCSSCCCSHHHHHHHHHHHHHHHH
T ss_pred             eecccChhhhcCCC-ccceehhhhhCCCCcccccccCCCcchhhhhHHHHhhhhhhccCcccchhhhhhcCHHHHHHHHH
Confidence            88899999999865 667799998888899999999999887776766665543322221      23578999999999


Q ss_pred             hccccCHHHHH-cCCCCC
Q 013230          423 LDKYNSAKEAI-FDPFFS  439 (447)
Q Consensus       423 mL~~dsa~elL-~HPff~  439 (447)
                      ||++|||+|+| +||||+
T Consensus       319 ~L~~dsa~e~l~~Hp~f~  336 (336)
T 2vuw_A          319 MLNFSSATDLLCQHSLFK  336 (336)
T ss_dssp             GGGSSSHHHHHHHCGGGC
T ss_pred             HhccCCHHHHHhcCCCcC
Confidence            99999999999 999996

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=8.8e-47  Score=369.06  Aligned_cols=238  Identities=17%  Similarity=0.224  Sum_probs=192.3

Q ss_pred             cceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      ++.++||+|+||+||+|++      ||+|++.....      .....+.+.+|+.+|++|+|        ||    ||++
T Consensus        29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~------~~~~~~~~~~E~~il~~l~H--------pn----IV~~   90 (290)
T 3fpq_A           29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKL------TKSERQRFKEEAEMLKGLQH--------PN----IVRF   90 (290)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGS------CHHHHHHHHHHHHHHHTCCC--------TT----BCCE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhC------CHHHHHHHHHHHHHHHhCCC--------CC----CCcE
Confidence            6678899999999999974      99999875432      22334678999999999999        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~  284 (447)
                      +++|.....                          .++.+|||||||+|| +|.+++.    +++..++.++.||+.||+
T Consensus        91 ~~~~~~~~~--------------------------~~~~~~lvmEy~~gg-~L~~~l~~~~~l~~~~~~~~~~qi~~aL~  143 (290)
T 3fpq_A           91 YDSWESTVK--------------------------GKKCIVLVTELMTSG-TLKTYLKRFKVMKIKVLRSWCRQILKGLQ  143 (290)
T ss_dssp             EEEEEEEET--------------------------TEEEEEEEEECCCSC-BHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEeeccC--------------------------CCcEEEEEEeCCCCC-CHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            999754211                          135689999999999 9999987    999999999999999999


Q ss_pred             HHHHhCC--eeeccCCCCCEEEec-CCCccccccccCcccccccCCCcEEEeeccceeecCCCC---EEEEecCCCCCCC
Q 013230          285 VAEAAYE--FEHRDLHWGNVLLSR-NDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED---IFFLDLSQDPELF  358 (447)
Q Consensus       285 ylH~~~~--iiHrDLKpeNILl~~-~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g---~i~~~~~~~pelf  358 (447)
                      |||+ +|  ||||||||+||||+. ++                    .+||+|||+|+......   .+.+..|++||++
T Consensus       144 ylH~-~~~~IiHRDlKp~NILl~~~~g--------------------~vKl~DFGla~~~~~~~~~~~~GTp~YmAPE~~  202 (290)
T 3fpq_A          144 FLHT-RTPPIIHRDLKCDNIFITGPTG--------------------SVKIGDLGLATLKRASFAKAVIGTPEFMAPEMY  202 (290)
T ss_dssp             HHHT-SSSCCCCCCCCGGGEEESSTTS--------------------CEEECCTTGGGGCCTTSBEESCSSCCCCCGGGG
T ss_pred             HHHH-CCCCEEecccChhheeEECCCC--------------------CEEEEeCcCCEeCCCCccCCcccCccccCHHHc
Confidence            9999 88  999999999999985 45                    79999999998754432   2345669999999


Q ss_pred             CCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccC-CCCCccchHHHHHHHHHhcccc-----CHHHH
Q 013230          359 SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKT-FDRSSKDERDLRSLKKRLDKYN-----SAKEA  432 (447)
Q Consensus       359 ~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~-~~~~~~~s~~l~dLl~~mL~~d-----sa~el  432 (447)
                      .+ .++.+.|||+ +|++.+++++|..||........+...+..... ...+...++++++||.+||+.|     ||+|+
T Consensus       203 ~~-~y~~~~DiwS-lGvilyelltg~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~  280 (290)
T 3fpq_A          203 EE-KYDESVDVYA-FGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDL  280 (290)
T ss_dssp             GT-CCCTHHHHHH-HHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred             CC-CCCcHHHHHH-HHHHHHHHHHCCCCCCCCCcHHHHHHHHHcCCCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHH
Confidence            87 5788889999 999999999999999754333333333332211 1223457899999999999999     99999


Q ss_pred             HcCCCCCC
Q 013230          433 IFDPFFSD  440 (447)
Q Consensus       433 L~HPff~~  440 (447)
                      |+||||++
T Consensus       281 l~Hp~~~~  288 (290)
T 3fpq_A          281 LNHAFFQE  288 (290)
T ss_dssp             HTSGGGC-
T ss_pred             hcCccccC
Confidence            99999985

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=7.4e-46  Score=364.53  Aligned_cols=247  Identities=19%  Similarity=0.225  Sum_probs=184.6

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||+||+|++      ||+|++....       .+...+.+.+|+.+|++|+|        ||    ||
T Consensus         6 dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~-------~~~~~~~~~~E~~il~~l~H--------pn----IV   66 (299)
T 4g31_A            6 DFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPN-------RELAREKVMREVKALAKLEH--------PG----IV   66 (299)
T ss_dssp             HEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECS-------SHHHHHHHHHHHHHHTTCCC--------TT----BC
T ss_pred             hCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccC-------CHHHHHHHHHHHHHHHhCCC--------CC----CC
Confidence            359999999999999999973      9999987542       22344678999999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------CCHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------LNINEARSLLVQV  279 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------l~~~~~~~i~~Qi  279 (447)
                      +++++|...+...                 .. ....++..+|||||||.|| +|.+++.       .+...++.++.||
T Consensus        67 ~~~~~~~~~~~~~-----------------~~-~~~~~~~~l~ivmE~~~gg-~L~~~l~~~~~~~~~~~~~~~~i~~qi  127 (299)
T 4g31_A           67 RYFNAWLEKNTTE-----------------KL-QPSSPKVYLYIQMQLCRKE-NLKDWMNGRCTIEERERSVCLHIFLQI  127 (299)
T ss_dssp             CEEEEEEEEC----------------------------CEEEEEEEECCCSC-CHHHHHHTCCSGGGSCHHHHHHHHHHH
T ss_pred             eEEEEEEecCccc-----------------cc-cccCCCcEEEEEEecCCCC-cHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence            9999987643210                 00 0011234589999999998 9999886       4567799999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---------------
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---------------  344 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---------------  344 (447)
                      +.||+|||+ +|||||||||+|||++.++                    .+||+|||+|+.....               
T Consensus       128 ~~al~ylH~-~~IiHRDlKp~NILl~~~~--------------------~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~  186 (299)
T 4g31_A          128 AEAVEFLHS-KGLMHRDLKPSNIFFTMDD--------------------VVKVGDFGLVTAMDQDEEEQTVLTPMPAYAR  186 (299)
T ss_dssp             HHHHHHHHH-TTCCCCCCCGGGEEECTTC--------------------CEEECCCCCC---------------------
T ss_pred             HHHHHHHHH-CcCccccCcHHHeEECCCC--------------------cEEEccCccceecCCCccccccccccccccc
Confidence            999999999 9999999999999999987                    7999999999875432               


Q ss_pred             --CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHH-HHHHHHHHhhccCCCC-CccchHHHHHHH
Q 013230          345 --DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLW-LVYLVDMLLLKKTFDR-SSKDERDLRSLK  420 (447)
Q Consensus       345 --g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~-~~~~~~~l~~~~~~~~-~~~~s~~l~dLl  420 (447)
                        +.+.+..|++||++.+..++.+.|||+ +|++.++++.   |+..... ...+....  ...+|. ....++++++||
T Consensus       187 ~~~~~GT~~YmAPE~~~~~~y~~~~DiwS-lGvilyell~---Pf~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~li  260 (299)
T 4g31_A          187 HTGQVGTKLYMSPEQIHGNSYSHKVDIFS-LGLILFELLY---PFSTQMERVRTLTDVR--NLKFPPLFTQKYPCEYVMV  260 (299)
T ss_dssp             -----CCCTTSCHHHHTTCCCCTHHHHHH-HHHHHHHHHS---CCSSHHHHHHHHHHHH--TTCCCHHHHHHCHHHHHHH
T ss_pred             cCCcccCccccCHHHHcCCCCCCHHHHHH-HHHHHHHHcc---CCCCccHHHHHHHHHh--cCCCCCCCcccCHHHHHHH
Confidence              224566799999999988888899999 9999999984   6654322 12222221  223332 234567899999


Q ss_pred             HHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          421 KRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       421 ~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                      ++||+.|     ||.|+|+||||+++..+
T Consensus       261 ~~~L~~dP~~Rps~~eil~h~~~~~~~~p  289 (299)
T 4g31_A          261 QDMLSPSPMERPEAINIIENAVFEDLDFP  289 (299)
T ss_dssp             HHHTCSSGGGSCCHHHHHTSGGGCCC---
T ss_pred             HHHcCCChhHCcCHHHHhcCHhhCCCCCC
Confidence            9999999     99999999999988654

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=3.7e-46  Score=371.19  Aligned_cols=235  Identities=20%  Similarity=0.170  Sum_probs=194.3

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|+..++||+|+||+||+|++      ||||++..+..             ..+|+.+|+.|+|        ||    ||
T Consensus        59 ~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-------------~~~E~~il~~l~H--------pn----IV  113 (336)
T 4g3f_A           59 WMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-------------RVEELVACAGLSS--------PR----IV  113 (336)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-------------CTHHHHTTTTCCC--------TT----BC
T ss_pred             heEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-------------HHHHHHHHHhCCC--------CC----CC
Confidence            358899999999999999974      99999985432             1479999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      +++++|..                              ++.+|||||||+|| +|.+++.    +++.+++.++.||+.|
T Consensus       114 ~l~~~~~~------------------------------~~~~~ivmEy~~gg-~L~~~l~~~~~l~e~~~~~~~~qi~~a  162 (336)
T 4g3f_A          114 PLYGAVRE------------------------------GPWVNIFMELLEGG-SLGQLIKQMGCLPEDRALYYLGQALEG  162 (336)
T ss_dssp             CEEEEEEE------------------------------TTEEEEEECCCTTC-BHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             cEEEEEEE------------------------------CCEEEEEEeccCCC-cHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            99999654                              56799999999999 9999987    9999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----------EEEEecC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----------IFFLDLS  352 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----------~i~~~~~  352 (447)
                      |+|||+ +|||||||||+||||+.++.                   .+||+|||+|+.....+          .+.+..|
T Consensus       163 L~ylH~-~~IiHRDlKp~NILl~~~g~-------------------~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~Y  222 (336)
T 4g3f_A          163 LEYLHT-RRILHGDVKADNVLLSSDGS-------------------RAALCDFGHALCLQPDGLGKSLLTGDYIPGTETH  222 (336)
T ss_dssp             HHHHHT-TTEECSCCCGGGEEECTTSC-------------------CEEECCCTTCEEC------------CCCCCCGGG
T ss_pred             HHHHHH-CCceecccCHHHEEEeCCCC-------------------EEEEeeCCCCeEccCCCcccceecCCccccCccc
Confidence            999999 99999999999999998862                   69999999999765432          1245669


Q ss_pred             CCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCC-CCCccchHHHHHHHHHhcccc----
Q 013230          353 QDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTF-DRSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       353 ~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~-~~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      ++||++.+..++.+.|||+ +|++.+++++|..||...........+......+ ..+..+++++++||.+||++|    
T Consensus       223 mAPE~~~~~~y~~~~DiwS-lGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  301 (336)
T 4g3f_A          223 MAPEVVMGKPCDAKVDIWS-SCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHR  301 (336)
T ss_dssp             CCHHHHTTCCCCTHHHHHH-HHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCCGGGGSCTTSCHHHHHHHHHHTCSSGGGS
T ss_pred             cCHHHHCCCCCCcHHHHHH-HHHHHHHHHHCcCCCCCCCHHHHHHHHHcCCCCchhcCccCCHHHHHHHHHHccCCHhHC
Confidence            9999999988888899999 9999999999999997643222233333222221 234678999999999999999    


Q ss_pred             -CHHHH-------------HcCCCCCCCCCC
Q 013230          428 -SAKEA-------------IFDPFFSDLIVD  444 (447)
Q Consensus       428 -sa~el-------------L~HPff~~~~~~  444 (447)
                       ||.|+             |+|||+++...|
T Consensus       302 ~sa~el~~~l~~~l~~~~~l~hPw~~~~~~P  332 (336)
T 4g3f_A          302 ASAMELRRKVGKALQEVGGLKSPWKGEYKEP  332 (336)
T ss_dssp             CCHHHHHHHHHHHHHHTTSSCSCSSSSCCCC
T ss_pred             cCHHHHHHHHHHHHhhhhhccCCCcCCCCCC
Confidence             99997             689999988655

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.9e-45  Score=372.08  Aligned_cols=244  Identities=21%  Similarity=0.257  Sum_probs=193.6

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+++++||+|+||+||+|++      ||||++.....      .....+.+.+|+.+|+.|+|        ||    ||+
T Consensus        56 Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~------~~~~~~~~~~Ei~il~~l~H--------pn----Iv~  117 (398)
T 4b99_A           56 YEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFD------VVTNAKRTLRELKILKHFKH--------DN----IIA  117 (398)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTS------SHHHHHHHHHHHHHHHHCCC--------TT----BCC
T ss_pred             eEEEEEEecccCeEEEEEEECCCCCEEEEEEECcccc------chHHHHHHHHHHHHHHhcCC--------CC----cce
Confidence            59999999999999999974      99999875432      22344678899999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++.....                        +...+.+|||||||. | +|.+++.    +++.+++.+++||+.||
T Consensus       118 l~~~~~~~~~------------------------~~~~~~~~ivmE~~~-g-~L~~~i~~~~~l~~~~~~~~~~qil~al  171 (398)
T 4b99_A          118 IKDILRPTVP------------------------YGEFKSVYVVLDLME-S-DLHQIIHSSQPLTLEHVRYFLYQLLRGL  171 (398)
T ss_dssp             EEEECCCSSC------------------------TTTCCCEEEEEECCS-E-EHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             Eeeeeecccc------------------------cccCCEEEEEEeCCC-C-CHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            9998543211                        223467999999996 6 7888876    99999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---------CEEEEecCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---------DIFFLDLSQD  354 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---------g~i~~~~~~~  354 (447)
                      +|||+ +|||||||||+|||++.++                    .+||+|||+|+.....         ..+.+..|++
T Consensus       172 ~ylH~-~~iiHRDlKP~NIl~~~~~--------------------~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~A  230 (398)
T 4b99_A          172 KYMHS-AQVIHRDLKPSNLLVNENC--------------------ELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRA  230 (398)
T ss_dssp             HHHHH-TTCBCCCCCGGGEEECTTC--------------------CEEECCCTTCBCC-------CCCCCSSCCCCTTCC
T ss_pred             HHHHH-CcCcCCCcCccccccCCCC--------------------CEEEeecceeeecccCccccccccccceeChHhcC
Confidence            99999 9999999999999999988                    7999999999865332         2345566999


Q ss_pred             CCCCCCCCC-CchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccC--------------------CCC-----
Q 013230          355 PELFSGPKG-DKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKT--------------------FDR-----  408 (447)
Q Consensus       355 pelf~g~~~-~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~--------------------~~~-----  408 (447)
                      ||++.+..+ +...|||+ +|++.++++.|..||........+..++.....                    ++.     
T Consensus       231 PEv~~~~~~~~~~~DiWS-lG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (398)
T 4b99_A          231 PELMLSLHEYTQAIDLWS-VGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPRQPVP  309 (398)
T ss_dssp             HHHHTTCSCCCTHHHHHH-HHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGGGTC-----CHHHHHHSSCCCCCCC
T ss_pred             HHHhcCCCCCCChhheeh-hHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcCCCcCCCC
Confidence            999888654 56679999 999999999999998654433333333211111                    111     


Q ss_pred             ----CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          409 ----SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       409 ----~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                          ....+++++|||++||++|     ||+|+|+||||++...
T Consensus       310 ~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~~  353 (398)
T 4b99_A          310 WETVYPGADRQALSLLGRMLRFEPSARISAAAALRHPFLAKYHD  353 (398)
T ss_dssp             HHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTSGGGTTTCC
T ss_pred             HHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcCHhhCcCCC
Confidence                1246899999999999999     9999999999998754

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=1.3e-44  Score=364.81  Aligned_cols=235  Identities=18%  Similarity=0.205  Sum_probs=185.0

Q ss_pred             CcceEEeccccceEEEEec---------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhcc-ccccCCCCCCCccc
Q 013230          134 PENIVKVGEGTFGEAFLAG---------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN-HLRRNEGDTLNACT  203 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~---------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~n~~~  203 (447)
                      |+++++||+|+||+||+|+         .||+|++....          ....+.+|+.+|+.+. |        ||   
T Consensus        23 Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~----------~~~~~~~E~~~l~~~~~h--------~n---   81 (361)
T 4f9c_A           23 FKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS----------HPIRIAAELQCLTVAGGQ--------DN---   81 (361)
T ss_dssp             CEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS----------CHHHHHHHHHHHHHTCSB--------TT---
T ss_pred             EEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc----------CHHHHHHHHHHHHHhcCC--------CC---
Confidence            4999999999999999995         28999875331          2356789999999984 5        66   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-CCHHHHHHHHHHHHHH
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-LNINEARSLLVQVTAG  282 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-l~~~~~~~i~~Qil~g  282 (447)
                       ||+++++|..                              ++.+|||||||+|| +|.+++. +++.+++.+++||+.|
T Consensus        82 -Iv~l~~~~~~------------------------------~~~~~lvmE~~~g~-~L~~~~~~l~~~~~~~~~~qll~a  129 (361)
T 4f9c_A           82 -VMGVKYCFRK------------------------------NDHVVIAMPYLEHE-SFLDILNSLSFQEVREYMLNLFKA  129 (361)
T ss_dssp             -BCCCSEEEEE------------------------------TTEEEEEEECCCCC-CHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             -CceEEEEEEE------------------------------CCEEEEEEeCCCcc-cHHHHHcCCCHHHHHHHHHHHHHH
Confidence             9999999654                              67799999999988 9999988 9999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----------------
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----------------  345 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----------------  345 (447)
                      |+|||+ +|||||||||+|||++.+..                   .+||+|||+|+......                 
T Consensus       130 l~ylH~-~gIiHRDiKPeNiLl~~~~~-------------------~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~  189 (361)
T 4f9c_A          130 LKRIHQ-FGIVHRDVKPSNFLYNRRLK-------------------KYALVDFGLAQGTHDTKIELLKFVQSEAQQERCS  189 (361)
T ss_dssp             HHHHHH-TTEECSCCSGGGEEEETTTT-------------------EEEECCCTTCEECTTCSCGGGGGC----------
T ss_pred             HHHHHH-CCeEeCcCCHHHeEEeCCCC-------------------eEEECcCCCCcccCCccccccccccccccccccc
Confidence            999999 99999999999999988732                   79999999998654320                 


Q ss_pred             ----------------EEEEecCCCCCCCCCCC-CCchHHHHHhhccCCcccccCCCCCChhH-HHHHHHHHH-------
Q 013230          346 ----------------IFFLDLSQDPELFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVL-WLVYLVDML-------  400 (447)
Q Consensus       346 ----------------~i~~~~~~~pelf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~-~~~~~~~~l-------  400 (447)
                                      .+.+..|++||++.+.. ++...|||+ +|++.+++.+|..||.... ....+..+.       
T Consensus       190 ~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWS-lG~il~ell~G~~Pf~~~~~~~~~l~~I~~~~G~~~  268 (361)
T 4f9c_A          190 QNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWS-AGVIFLSLLSGRYPFYKASDDLTALAQIMTIRGSRE  268 (361)
T ss_dssp             ----------------CCCCGGGCCHHHHTTCSCCCTHHHHHH-HHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHH
T ss_pred             cccccccccccccccccccCccccCHHHHcCCCCCCCccchhh-hHHHHHHHHHCCCCCCCCCCHHHHHHHHHHhcCCcc
Confidence                            12345599999998754 566779999 9999999999999984321 000010000       


Q ss_pred             ------------------------------hh-c--------------cCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          401 ------------------------------LL-K--------------KTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       401 ------------------------------~~-~--------------~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                                                    .. .              ...+....+|++++|||++||++|     ||+
T Consensus       269 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~is~~a~DLl~~lL~~dP~~R~ta~  348 (361)
T 4f9c_A          269 TIQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNEVPDEAYDLLDKLLDLNPASRITAE  348 (361)
T ss_dssp             HHHHHHHTTEEEEESSCCCCCCHHHHHHHHC----------------------CTTCCHHHHHHHHHHTCSCTTTSCCHH
T ss_pred             chhhhhhccccccccccCcchhhhHHHHhhccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHH
Confidence                                          00 0              001123457899999999999999     999


Q ss_pred             HHHcCCCCCCCC
Q 013230          431 EAIFDPFFSDLI  442 (447)
Q Consensus       431 elL~HPff~~~~  442 (447)
                      |||+||||+++.
T Consensus       349 eaL~Hp~f~~i~  360 (361)
T 4f9c_A          349 EALLHPFFKDMS  360 (361)
T ss_dssp             HHHTSGGGTTC-
T ss_pred             HHhcCcccCCCC
Confidence            999999999875

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=2.2e-43  Score=377.10  Aligned_cols=242  Identities=20%  Similarity=0.145  Sum_probs=194.6

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||+||+|++      ||||++.+...     ........+.+|..++..+.+++|     ||    ||
T Consensus       190 df~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i-----~~~~~~~~~~~E~~~l~ll~~~~H-----P~----IV  255 (689)
T 3v5w_A          190 DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRI-----KMKQGETLALNERIMLSLVSTGDC-----PF----IV  255 (689)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHH-----HHTTCHHHHHHHHHHHHHHSSSCC-----TT----BC
T ss_pred             HeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHc-----chhhhHHHHHHHHHHHHHHhhCCC-----CC----Ee
Confidence            469999999999999999984      99999975432     112223445666555555544333     77    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      +++++|..                              ++.+|||||||.|| +|..++.    +++..++.|+.||+.|
T Consensus       256 ~l~~~f~~------------------------------~~~lylVmEy~~GG-dL~~~l~~~~~l~E~~a~~y~~qIl~a  304 (689)
T 3v5w_A          256 CMSYAFHT------------------------------PDKLSFILDLMNGG-DLHYHLSQHGVFSEADMRFYAAEIILG  304 (689)
T ss_dssp             CEEEEEEC------------------------------SSEEEEEECCCCSC-BHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             EEEEEEEE------------------------------CCEEEEEEecCCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            99999643                              67799999999999 9999986    9999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---CEEEEecCCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---DIFFLDLSQDPELFS  359 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---g~i~~~~~~~pelf~  359 (447)
                      |+|||+ +|||||||||+||||+.++                    ++||+|||+|+.....   ..+.+..|++||++.
T Consensus       305 L~yLH~-~gIiHRDLKPeNILld~~G--------------------~vKL~DFGlA~~~~~~~~~t~~GTp~YmAPEvl~  363 (689)
T 3v5w_A          305 LEHMHN-RFVVYRDLKPANILLDEHG--------------------HVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQ  363 (689)
T ss_dssp             HHHHHT-TTEECCCCSGGGEEECTTS--------------------CEEECCCTTCEECSSCCCCSCCSCGGGCCHHHHS
T ss_pred             HHHHHH-CCccccCCchHHeEEeCCC--------------------CEEecccceeeecCCCCCCCccCCcCccCHHHHh
Confidence            999999 9999999999999999998                    8999999999876543   334566799999996


Q ss_pred             -CCCCCchHHHHHhhccCCcccccCCCCCChhH---HHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C--
Q 013230          360 -GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVL---WLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S--  428 (447)
Q Consensus       360 -g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~---~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s--  428 (447)
                       +..++..+|+|+ +|++.+++..|..||....   .......++  ...+..+..+|++++|||++||+.|     +  
T Consensus       364 ~~~~y~~~vDiWS-LGvilYEmLtG~~PF~~~~~~~~~~i~~~i~--~~~~~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~  440 (689)
T 3v5w_A          364 KGVAYDSSADWFS-LGCMLFKLLRGHSPFRQHKTKDKHEIDRMTL--TMAVELPDSFSPELRSLLEGLLQRDVNRRLGCL  440 (689)
T ss_dssp             TTCCCCTHHHHHH-HHHHHHHHHHSSCTTCGGGCCCHHHHHHHHH--HCCCCCCTTSCHHHHHHHHHHTCSCGGGCTTCS
T ss_pred             CCCCCCcHHHHHH-HHHHHHHHHhCCCCCCCCChHHHHHHHHhhc--CCCCCCCccCCHHHHHHHHHHccCCHhHCCCCC
Confidence             456778889999 9999999999999996532   122223333  2334445679999999999999999     3  


Q ss_pred             ---HHHHHcCCCCCCCCC
Q 013230          429 ---AKEAIFDPFFSDLIV  443 (447)
Q Consensus       429 ---a~elL~HPff~~~~~  443 (447)
                         |+|+++||||+++.+
T Consensus       441 ~~ga~ei~~HpfF~~idW  458 (689)
T 3v5w_A          441 GRGAQEVKESPFFRSLDW  458 (689)
T ss_dssp             SSTHHHHTTSGGGTTCCH
T ss_pred             CCCHHHHhcCccccCCCH
Confidence               899999999998754

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=1.9e-42  Score=368.87  Aligned_cols=240  Identities=18%  Similarity=0.181  Sum_probs=201.3

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||+||+|++      ||+|++.....        ...+.+.+|+.+|+.|+|        ||    ||+
T Consensus       159 Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~--------~~~~~~~~Ei~il~~l~h--------pn----Iv~  218 (573)
T 3uto_A          159 YDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHE--------SDKETVRKEIQTMSVLRH--------PT----LVN  218 (573)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSH--------HHHHHHHHHHHHHHHTCC--------TT----BCC
T ss_pred             cEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccch--------hhHHHHHHHHHHHHhCCC--------CC----CCe
Confidence            49999999999999999974      99999875421        234678899999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      ++++|..                              ++.+|||||||.|| +|.+++.     +++.+++.+++||+.|
T Consensus       219 l~~~~~~------------------------------~~~~~iv~E~~~gg-~L~~~i~~~~~~l~e~~~~~~~~qi~~a  267 (573)
T 3uto_A          219 LHDAFED------------------------------DNEMVMIYEFMSGG-ELFEKVADEHNKMSEDEAVEYMRQVCKG  267 (573)
T ss_dssp             EEEEEEC------------------------------SSEEEEEEECCCCC-BHHHHHTCTTSCEEHHHHHHHHHHHHHH
T ss_pred             EEEEEEE------------------------------CCEEEEEEeecCCC-cHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence            9999643                              67799999999999 9988874     8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE----EEecCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF----FLDLSQDPELF  358 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i----~~~~~~~pelf  358 (447)
                      |+|||+ +||+||||||+|||++.+..                  -.+||+|||+|+........    ....|++||++
T Consensus       268 l~ylH~-~~iiHRDlKp~Nill~~~~~------------------~~vKl~DFG~a~~~~~~~~~~~~~GT~~y~APEv~  328 (573)
T 3uto_A          268 LCHMHE-NNYVHLDLKPENIMFTTKRS------------------NELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVA  328 (573)
T ss_dssp             HHHHHH-TTEECCCCCGGGEEESSSSC------------------CCEEECCCSSCEECCTTSEEEEECSSGGGCCHHHH
T ss_pred             HHHHHH-CCeeeccCChhhccccCCCC------------------CCEEEeeccceeEccCCCceeeeEECccccCHHHh
Confidence            999999 99999999999999987521                  17999999999987665432    23459999999


Q ss_pred             CCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc-----CHHH
Q 013230          359 SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN-----SAKE  431 (447)
Q Consensus       359 ~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d-----sa~e  431 (447)
                      .+..++...|||+ +|++.++++.|..||........+..+......++.  +..+|++++|||++||++|     ||+|
T Consensus       329 ~~~~y~~~~DiWS-lGvilyeml~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~~L~~dp~~R~t~~e  407 (573)
T 3uto_A          329 EGKPVGYYTDMWS-VGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQ  407 (573)
T ss_dssp             TTCCBCHHHHHHH-HHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHH
T ss_pred             CCCCCCcHHHHHH-HHHHHHHHHHCCCCCCCcCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHH
Confidence            9988888889999 999999999999999876555555555543333332  3468999999999999999     9999


Q ss_pred             HHcCCCCCCCCCC
Q 013230          432 AIFDPFFSDLIVD  444 (447)
Q Consensus       432 lL~HPff~~~~~~  444 (447)
                      +|+||||+....+
T Consensus       408 ~l~Hpw~~~~~~~  420 (573)
T 3uto_A          408 ALEHPWLTPGNAP  420 (573)
T ss_dssp             HHHSTTTSCCCCT
T ss_pred             HhcCcCcCCCCCC
Confidence            9999999976543

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=8.5e-42  Score=336.23  Aligned_cols=234  Identities=16%  Similarity=0.163  Sum_probs=184.8

Q ss_pred             CCcceEEeccccceEEEEec---eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeee
Q 013230          133 DPENIVKVGEGTFGEAFLAG---NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMF  209 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~---~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~  209 (447)
                      ++++.++||+|+||+||+|+   .||||+++...      ......+.+.+|+.+|++|+|        ||    ||+++
T Consensus        37 ~l~l~~~iG~G~fG~Vy~~~~~~~vAvK~~~~~~------~~~~~~~~f~~E~~il~~l~H--------pN----IV~l~   98 (307)
T 3omv_A           37 EVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVD------PTPEQFQAFRNEVAVLRKTRH--------VN----ILLFM   98 (307)
T ss_dssp             SCCEEEECCCCSSSEEEEEESSSEEEEEECCCSS------CCHHHHHHHHHHHHHHTTCCC--------TT----BCCEE
T ss_pred             HeEEeeEEeeCCCcEEEEEEECCcEEEEEEEecC------CCHHHHHHHHHHHHHHHhCCC--------CC----EeeEE
Confidence            45899999999999999997   59999986432      223345789999999999999        88    99999


Q ss_pred             eEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHHHH
Q 013230          210 EIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       210 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~gL~  284 (447)
                      +++.                               ++.+|||||||+|| +|.+++.     +++.++..|+.||+.||+
T Consensus        99 g~~~-------------------------------~~~~~iVmEy~~gG-sL~~~l~~~~~~l~~~~~~~i~~qia~gL~  146 (307)
T 3omv_A           99 GYMT-------------------------------KDNLAIVTQWCEGS-SLYKHLHVQETKFQMFQLIDIARQTAQGMD  146 (307)
T ss_dssp             EEEC-------------------------------SSSCEEEEECCSSC-BHHHHHHTSCCCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEE-------------------------------CCeEEEEEEcCCCC-CHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence            9731                               34589999999999 9999884     899999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-------CEEEEecCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-------DIFFLDLSQDPEL  357 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-------g~i~~~~~~~pel  357 (447)
                      |||+ ++||||||||+||||+.++                    .+||+|||+|+.....       .......|++||+
T Consensus       147 yLH~-~~IiHRDlKp~NILl~~~~--------------------~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~  205 (307)
T 3omv_A          147 YLHA-KNIIHRDMKSNNIFLHEGL--------------------TVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEV  205 (307)
T ss_dssp             HHHH-TTCBCSCCCSSSEEEETTE--------------------EEEECCCSSCBC------------CCCCTTSCCHHH
T ss_pred             HHHH-CCccCCccCHHHEEECCCC--------------------cEEEeeccCceecccCCcceeecccccCCCccCHHH
Confidence            9999 9999999999999999987                    8999999999875432       1123455999999


Q ss_pred             CCCC---CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCC----CCccchHHHHHHHHHhcccc---
Q 013230          358 FSGP---KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFD----RSSKDERDLRSLKKRLDKYN---  427 (447)
Q Consensus       358 f~g~---~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~----~~~~~s~~l~dLl~~mL~~d---  427 (447)
                      +.+.   .++.+.|||+ +|++.+++++|..||........+...+......|    .+..+++++.+|+.+||+.|   
T Consensus       206 l~~~~~~~y~~ksDVwS-~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dP~~  284 (307)
T 3omv_A          206 IRMQDNNPFSFQSDVYS-YGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEE  284 (307)
T ss_dssp             HHCCSSCCCCHHHHHHH-HHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCCCCCSTTSCTTSCHHHHHHHHHHTCSSSTT
T ss_pred             hhccCCCCCCcHHHhHh-HHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCCcccccccchHHHHHHHHHHcCCCHhH
Confidence            8643   3566789999 99999999999999975432222222322221221    24567899999999999999   


Q ss_pred             --CHHHH------HcCCCC
Q 013230          428 --SAKEA------IFDPFF  438 (447)
Q Consensus       428 --sa~el------L~HPff  438 (447)
                        |+.|+      |+||+-
T Consensus       285 RPs~~ei~~~Le~l~~~lp  303 (307)
T 3omv_A          285 RPLFPQILSSIELLQHSLP  303 (307)
T ss_dssp             SCCHHHHHHHHHHHHTTCC
T ss_pred             CcCHHHHHHHHHHHhccCC
Confidence              77764      678874

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=2.4e-42  Score=339.40  Aligned_cols=232  Identities=21%  Similarity=0.241  Sum_probs=190.0

Q ss_pred             CCcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCc
Q 013230          133 DPENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA  201 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~  201 (447)
                      +|.+.++||+|+||+||+|+           .||||++...        .....+.+.+|+.+|++|+|        || 
T Consensus        14 ~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~--------~~~~~~~f~~E~~il~~l~H--------pn-   76 (299)
T 4asz_A           14 NIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA--------SDNARKDFHREAELLTNLQH--------EH-   76 (299)
T ss_dssp             GEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSC--------CHHHHHHHHHHHHHHTTCCC--------TT-
T ss_pred             HeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCC--------ChHHHHHHHHHHHHHHhCCC--------CC-
Confidence            45889999999999999995           2899998632        22334678999999999998        88 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------------
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------------  266 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------------  266 (447)
                         ||++++++.                              .++.+|||||||++| +|.+++.               
T Consensus        77 ---IV~l~g~~~------------------------------~~~~~~lV~Ey~~~G-~L~~~l~~~~~~~~~~~~~~~~  122 (299)
T 4asz_A           77 ---IVKFYGVCV------------------------------EGDPLIMVFEYMKHG-DLNKFLRAHGPDAVLMAEGNPP  122 (299)
T ss_dssp             ---BCCEEEEEC------------------------------SSSSEEEEEECCTTC-BHHHHHHHTSHHHHHC----CC
T ss_pred             ---CccEEEEEe------------------------------eCCEEEEEEEcCCCC-cHHHHHHhcCcccccccccCCC
Confidence               999999953                              256799999999999 9999872               


Q ss_pred             --CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC
Q 013230          267 --LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE  344 (447)
Q Consensus       267 --l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~  344 (447)
                        +++.++..++.||+.||+|||+ ++||||||||+||||+.++                    .+||+|||+|+.....
T Consensus       123 ~~l~~~~~~~i~~qia~gl~yLH~-~~iiHRDlKp~NILl~~~~--------------------~~Ki~DFGla~~~~~~  181 (299)
T 4asz_A          123 TELTQSQMLHIAQQIAAGMVYLAS-QHFVHRDLATRNCLVGENL--------------------LVKIGDFGMSRDVYST  181 (299)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHH-TTCCCSCCSGGGEEECGGG--------------------CEEECCCSCHHHHTGG
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHh-CCcccCccCHhhEEECCCC--------------------cEEECCcccceecCCC
Confidence              7899999999999999999999 9999999999999999987                    7999999999865332


Q ss_pred             -------CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHH
Q 013230          345 -------DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDL  416 (447)
Q Consensus       345 -------g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l  416 (447)
                             .......|++||.+.+..++.+.|||+ +|++.+++++ |..||......+.+..+. .....+.+..+++++
T Consensus       182 ~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS-~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~-~~~~~~~p~~~~~~~  259 (299)
T 4asz_A          182 DYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWS-LGVVLWEIFTYGKQPWYQLSNNEVIECIT-QGRVLQRPRTCPQEV  259 (299)
T ss_dssp             GCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHH-HHHHHHHHHTTTCCTTTTSCHHHHHHHHH-HTCCCCCCTTCCHHH
T ss_pred             CceeecCceecChhhcCHHHHcCCCCCchhhHHH-HHHHHHHHHcCCCCCCCCCCHHHHHHHHH-cCCCCCCCccchHHH
Confidence                   233445599999999888888899999 9999999998 789987654444443333 334556667899999


Q ss_pred             HHHHHHhcccc-----CHHHHHcCCCCCC
Q 013230          417 RSLKKRLDKYN-----SAKEAIFDPFFSD  440 (447)
Q Consensus       417 ~dLl~~mL~~d-----sa~elL~HPff~~  440 (447)
                      .+|+.+||+.|     |++|+  |+|+++
T Consensus       260 ~~li~~cl~~dP~~RPs~~~i--~~~L~~  286 (299)
T 4asz_A          260 YELMLGCWQREPHMRKNIKGI--HTLLQN  286 (299)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHH--HHHHHH
T ss_pred             HHHHHHHcCCChhHCcCHHHH--HHHHHH
Confidence            99999999999     99988  344443

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=2.2e-41  Score=339.80  Aligned_cols=233  Identities=18%  Similarity=0.195  Sum_probs=191.0

Q ss_pred             CCcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCc
Q 013230          133 DPENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA  201 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~  201 (447)
                      +|++.++||+|+||+||+|+           .||+|.+...       ......+.+.+|+.+|++++|  |     || 
T Consensus        65 ~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~-------~~~~~~~~~~~E~~il~~l~h--h-----pn-  129 (353)
T 4ase_A           65 RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEG-------ATHSEHRALMSELKILIHIGH--H-----LN-  129 (353)
T ss_dssp             GEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTT-------CCHHHHHHHHHHHHHHHHHCC--C-----TT-
T ss_pred             HeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccc-------cChHHHHHHHHHHHHHHHcCC--C-----Cc-
Confidence            34999999999999999996           2788877633       222334678999999999977  1     45 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------------
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------------  266 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------------  266 (447)
                         ||++++++..                             +.+.+|||||||++| +|.+++.               
T Consensus       130 ---IV~l~g~~~~-----------------------------~~~~~~iV~Ey~~~G-~L~~~L~~~~~~~~~~~~~~~~  176 (353)
T 4ase_A          130 ---VVNLLGACTK-----------------------------PGGPLMVIVEFCKFG-NLSTYLRSKRNEFVPYKVAPED  176 (353)
T ss_dssp             ---BCCEEEEECC-----------------------------TTSCCEEEEECCTTE-EHHHHHHHTGGGBCCC------
T ss_pred             ---EEEEEEEEEe-----------------------------cCCEEEEEEEcCCCC-CHHHHHHhcccccccccccchh
Confidence               9999998532                             235689999999999 9999873               


Q ss_pred             -----CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeec
Q 013230          267 -----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRIN  341 (447)
Q Consensus       267 -----l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~  341 (447)
                           +++..+..++.||+.||+|||+ ++||||||||+|||++.++                    .+||+|||+|+..
T Consensus       177 ~~~~~l~~~~~~~~~~qia~gl~yLH~-~~iiHRDLK~~NILl~~~~--------------------~vKi~DFGlar~~  235 (353)
T 4ase_A          177 LYKDFLTLEHLICYSFQVAKGMEFLAS-RKCIHRDLAARNILLSEKN--------------------VVKICDFGLARDI  235 (353)
T ss_dssp             -CTTCBCHHHHHHHHHHHHHHHHHHHH-TTCCCSCCSGGGEEECGGG--------------------CEEECCCGGGSCT
T ss_pred             hccccCCHHHHHHHHHHHHHHHHhHhh-CCeecCccCccceeeCCCC--------------------CEEECcchhhhhc
Confidence                 6889999999999999999999 9999999999999999987                    7999999999876


Q ss_pred             CCC-------CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccch
Q 013230          342 TGE-------DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDE  413 (447)
Q Consensus       342 ~~~-------g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s  413 (447)
                      ...       .......|++||++.+..++.+.|||+ +|++.+++++ |..||........+...+.....++.+...+
T Consensus       236 ~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS-~Gv~l~El~t~G~~Pf~~~~~~~~~~~~i~~g~~~~~p~~~~  314 (353)
T 4ase_A          236 YKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWS-FGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTT  314 (353)
T ss_dssp             TTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHH-HHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCC
T ss_pred             ccCCCceeeccccccccccCHHHHhcCCCCCcccEee-hHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCCCCCccCC
Confidence            433       223344599999999888888899999 9999999998 7888876433333444454445666677899


Q ss_pred             HHHHHHHHHhcccc-----CHHHHHcC
Q 013230          414 RDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       414 ~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      +++.+||.+||+.|     |+.|+++|
T Consensus       315 ~~~~~li~~c~~~dP~~RPt~~eil~~  341 (353)
T 4ase_A          315 PEMYQTMLDCWHGEPSQRPTFSELVEH  341 (353)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHHHcCcChhHCcCHHHHHHH
Confidence            99999999999999     99999987

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=7.1e-41  Score=333.16  Aligned_cols=229  Identities=22%  Similarity=0.249  Sum_probs=184.6

Q ss_pred             CCcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCc
Q 013230          133 DPENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA  201 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~  201 (447)
                      +|.+.++||+|+||+||+|+           .||||++...        .....+.+.+|+.+|++|+|        || 
T Consensus        42 d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~--------~~~~~~~f~~E~~il~~l~H--------pn-  104 (329)
T 4aoj_A           42 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA--------SESARQDFQREAELLTMLQH--------QH-  104 (329)
T ss_dssp             GEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC--------SHHHHHHHHHHHHHHTTCCC--------TT-
T ss_pred             HeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcC--------CHHHHHHHHHHHHHHHhCCC--------CC-
Confidence            44788999999999999995           2999998632        22344679999999999998        88 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------------
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------------  266 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------------  266 (447)
                         ||++++++.                              ..+.+|||||||++| +|.+++.               
T Consensus       105 ---IV~l~g~~~------------------------------~~~~~~lV~Ey~~~G-~L~~~l~~~~~~~~~~~~~~~~  150 (329)
T 4aoj_A          105 ---IVRFFGVCT------------------------------EGRPLLMVFEYMRHG-DLNRFLRSHGPDAKLLAGGEDV  150 (329)
T ss_dssp             ---BCCEEEEEC------------------------------SSSSEEEEEECCTTC-BHHHHHHTSSCC----------
T ss_pred             ---CCcEEEEEE------------------------------ECCEEEEEEEcCCCC-cHHHHHHhcCcccccccccccc
Confidence               999999953                              256799999999999 9999863               


Q ss_pred             ----CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC
Q 013230          267 ----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT  342 (447)
Q Consensus       267 ----l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~  342 (447)
                          +++.++..|+.||+.||+|||+ ++||||||||+||||+.+.                    .+||+|||+|+...
T Consensus       151 ~~~~l~~~~~~~i~~qia~gl~yLH~-~~iiHRDLKp~NILl~~~~--------------------~~Ki~DFGla~~~~  209 (329)
T 4aoj_A          151 APGPLGLGQLLAVASQVAAGMVYLAG-LHFVHRDLATRNCLVGQGL--------------------VVKIGDFGMSRDIY  209 (329)
T ss_dssp             -CCSCCHHHHHHHHHHHHHHHHHHHH-TTCCCSCCCGGGEEEETTT--------------------EEEECCCC------
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhc-CCeecccccHhhEEECCCC--------------------cEEEcccccceecc
Confidence                7889999999999999999999 9999999999999999987                    89999999998754


Q ss_pred             CCC-------EEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchH
Q 013230          343 GED-------IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDER  414 (447)
Q Consensus       343 ~~g-------~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~  414 (447)
                      ...       ......|++||++.+..++.+.|||+ +|++.+++++ |..||........+..+. ....++.+..+++
T Consensus       210 ~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS-~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~-~g~~~~~p~~~~~  287 (329)
T 4aoj_A          210 STDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWS-FGVVLWEIFTYGKQPWYQLSNTEAIDCIT-QGRELERPRACPP  287 (329)
T ss_dssp             ----------CCCCGGGCCHHHHTTCCCCHHHHHHH-HHHHHHHHHTTSCCTTCSSCHHHHHHHHH-HTCCCCCCTTCCH
T ss_pred             CCCcceecCcccccccccChhhhcCCCCCccccccc-hHHHHHHHHcCCCCCCCCCCHHHHHHHHH-cCCCCCCcccccH
Confidence            331       12234599999999988888899999 9999999998 788987654444433333 3345666778999


Q ss_pred             HHHHHHHHhcccc-----CHHHHHcC
Q 013230          415 DLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       415 ~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      ++.+|+.+||+.|     |++|++++
T Consensus       288 ~~~~li~~cl~~dP~~RPs~~ei~~~  313 (329)
T 4aoj_A          288 EVYAIMRGCWQREPQQRHSIKDVHAR  313 (329)
T ss_dssp             HHHHHHHHHCCSSTTTSCCHHHHHHH
T ss_pred             HHHHHHHHHcCcChhHCcCHHHHHHH
Confidence            9999999999999     89988754

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=1.2e-40  Score=328.66  Aligned_cols=229  Identities=19%  Similarity=0.167  Sum_probs=189.6

Q ss_pred             CcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          134 PENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      ++++++||+|+||+||+|+           .||||++...       ......+.+.+|+.+|++|+|        ||  
T Consensus        28 ~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~-------~~~~~~~~f~~E~~il~~l~H--------pN--   90 (308)
T 4gt4_A           28 VRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDK-------AEGPLREEFRHEAMLRARLQH--------PN--   90 (308)
T ss_dssp             EEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC--------CCC-CHHHHHHHHHHHHHCCC--------TT--
T ss_pred             CeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcc-------cChHHHHHHHHHHHHHHhCCC--------CC--
Confidence            3889999999999999986           3999988633       223345789999999999999        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----------------
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----------------  266 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----------------  266 (447)
                        ||++++++.                              .++.+|||||||++| +|.+++.                
T Consensus        91 --IV~l~g~~~------------------------------~~~~~~lV~Ey~~~G-~L~~~L~~~~~~~~~~~~~~~~~  137 (308)
T 4gt4_A           91 --VVCLLGVVT------------------------------KDQPLSMIFSYCSHG-DLHEFLVMRSPHSDVGSTDDDRT  137 (308)
T ss_dssp             --BCCEEEEEC------------------------------SSSSCEEEEECCSSC-BHHHHHHTTCSSCCCC-----CC
T ss_pred             --CCCcceEEE------------------------------ECCEEEEEEEcCCCC-cHHHHHHhhCccccccccccccc
Confidence              999999943                              256699999999999 9999872                


Q ss_pred             ----CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC
Q 013230          267 ----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT  342 (447)
Q Consensus       267 ----l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~  342 (447)
                          +++.++..++.||+.||+|||+ ++||||||||+||||+.++                    .+||+|||+|+...
T Consensus       138 ~~~~l~~~~~~~i~~qia~gl~yLH~-~~iiHRDLK~~NILl~~~~--------------------~~Ki~DFGlar~~~  196 (308)
T 4gt4_A          138 VKSALEPPDFVHLVAQIAAGMEYLSS-HHVVHKDLATRNVLVYDKL--------------------NVKISDLGLFREVY  196 (308)
T ss_dssp             EECCCCHHHHHHHHHHHHHHHHHHHH-TTCCCSCCSGGGEEECGGG--------------------CEEECCSCCBCGGG
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHh-CCCCCCCccccceEECCCC--------------------CEEECCcccceecc
Confidence                7899999999999999999999 9999999999999999987                    79999999998653


Q ss_pred             CC-------CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchH
Q 013230          343 GE-------DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDER  414 (447)
Q Consensus       343 ~~-------g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~  414 (447)
                      ..       .......|++||.+.+..++.+.|||+ +|++.+++++ |..||.......... .+......+.+...++
T Consensus       197 ~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwS-fGvvl~El~t~g~~Pf~~~~~~~~~~-~i~~~~~~~~p~~~~~  274 (308)
T 4gt4_A          197 AADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWS-YGVVLWEVFSYGLQPYCGYSNQDVVE-MIRNRQVLPCPDDCPA  274 (308)
T ss_dssp             GGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHH-HHHHHHHHHTTTCCTTTTCCHHHHHH-HHHTTCCCCCCTTCCH
T ss_pred             CCCceeEecccccCCcccCHHHHhCCCCCccchhhh-HHHHHHHHHhCCCCCCCCCCHHHHHH-HHHcCCCCCCcccchH
Confidence            22       122344599999998888888889999 9999999998 778887654433333 3334455667778999


Q ss_pred             HHHHHHHHhcccc-----CHHHHHcC
Q 013230          415 DLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       415 ~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      ++.+|+.+|+..|     |+.|++++
T Consensus       275 ~~~~li~~C~~~dP~~RPs~~ei~~~  300 (308)
T 4gt4_A          275 WVYALMIECWNEFPSRRPRFKDIHSR  300 (308)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            9999999999999     99999875

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=4e-39  Score=320.46  Aligned_cols=239  Identities=23%  Similarity=0.299  Sum_probs=199.0

Q ss_pred             CCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccce
Q 013230          132 SDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~i  205 (447)
                      .+|++++.||+|+||.||+|++      ||+|++....      ......+.+.+|+.+++.++|        ||    |
T Consensus        15 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------pn----I   76 (328)
T 3fe3_A           15 GNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQ------LNPTSLQKLFREVRIMKILNH--------PN----I   76 (328)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGG------SCHHHHHHHHHHHHHHHHCCC--------TT----B
T ss_pred             CCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhc------CCHHHHHHHHHHHHHHHhCCC--------CC----E
Confidence            3459999999999999999974      9999987542      123345678899999999998        88    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTA  281 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~  281 (447)
                      +++++++..                              ++.+|+||||+.|| +|.+++.    +++..++.++.||+.
T Consensus        77 v~l~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~l~~~~~~~~~~qi~~  125 (328)
T 3fe3_A           77 VKLFEVIET------------------------------EKTLYLIMEYASGG-EVFDYLVAHGRMKEKEARSKFRQIVS  125 (328)
T ss_dssp             CCEEEEEEC------------------------------SSEEEEEECCCTTC-BHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             eeEEEEEEE------------------------------CCEEEEEEECCCCC-cHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            999999543                              56799999999988 9998875    999999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPEL  357 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pel  357 (447)
                      ||+|||+ .||+||||||+|||++.++                    .+||+|||+|+.....+    ......|++||+
T Consensus       126 al~~lH~-~~ivHrDlkp~NIll~~~~--------------------~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~  184 (328)
T 3fe3_A          126 AVQYCHQ-KRIVHRDLKAENLLLDADM--------------------NIKIADFGFSNEFTVGGKLDAFCGAPPYAAPEL  184 (328)
T ss_dssp             HHHHHHH-TTCCCSCCCGGGEEECTTS--------------------CEEECSTTCCGGGSSSCGGGTTSSSGGGCCHHH
T ss_pred             HHHHHHH-CCEeccCCCHHHEEEcCCC--------------------CEEEeeccCceecCCCCccccccCCcceeCccc
Confidence            9999999 9999999999999999987                    79999999998655432    123345899999


Q ss_pred             CCCCCCC-chHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHH
Q 013230          358 FSGPKGD-KQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKE  431 (447)
Q Consensus       358 f~g~~~~-~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~e  431 (447)
                      +.+.... .+.|||+ +|++.++++.|..||...........+..  ..+..+...++++.+||++||..|     |++|
T Consensus       185 ~~~~~~~~~~~Diws-lG~il~ell~g~~pf~~~~~~~~~~~i~~--~~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~e  261 (328)
T 3fe3_A          185 FQGKKYDGPEVDVWS-LGVILYTLVSGSLPFDGQNLKELRERVLR--GKYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQ  261 (328)
T ss_dssp             HHTCCCCSHHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHH--CCCCCCTTSCHHHHHHHHHHCCSSTTTSCCHHH
T ss_pred             ccCCCcCCchhhhhh-hHHHHHHHHhCCCCCCCCCHHHHHHHHHh--CCCCCCCCCCHHHHHHHHHHCCCChhHCcCHHH
Confidence            9887665 5669999 99999999999999987655555555553  334445668999999999999999     9999


Q ss_pred             HHcCCCCCCCCC
Q 013230          432 AIFDPFFSDLIV  443 (447)
Q Consensus       432 lL~HPff~~~~~  443 (447)
                      +++||||+....
T Consensus       262 il~h~~~~~~~~  273 (328)
T 3fe3_A          262 IMKDRWINAGHE  273 (328)
T ss_dssp             HTTCTTTTTTCT
T ss_pred             HhcCHhhcCCCc
Confidence            999999986544

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=9.6e-39  Score=318.98  Aligned_cols=238  Identities=18%  Similarity=0.202  Sum_probs=198.4

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|++      ||+|++.....     ........+.+|+.+++.++|        ||    |+
T Consensus         6 ~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~~~~~E~~~l~~l~h--------p~----iv   68 (337)
T 1o6l_A            6 DFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVI-----IAKDEVAHTVTESRVLQNTRH--------PF----LT   68 (337)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHH-----HHTTCHHHHHHHHHHHHSCCC--------TT----BC
T ss_pred             HeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHh-----hhhhHHHHHHHHHHHHHhCCC--------Cc----Cc
Confidence            459999999999999999973      99999875321     122345678999999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              .+.+|+||||+.|| +|..++.    +++..++.++.||+.|
T Consensus        69 ~l~~~~~~------------------------------~~~~~lv~E~~~gg-~L~~~l~~~~~~~~~~~~~~~~qi~~a  117 (337)
T 1o6l_A           69 ALKYAFQT------------------------------HDRLCFVMEYANGG-ELFFHLSRERVFTEERARFYGAEIVSA  117 (337)
T ss_dssp             CEEEEEEC------------------------------SSEEEEEEECCTTC-BHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             ceEEEEEe------------------------------CCEEEEEEeCCCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            99998643                              56799999999988 9988876    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pel  357 (447)
                      |+|||+ +||+||||||+|||++.++                    .+||+|||+|+.....     .......|++||+
T Consensus       118 L~~LH~-~~ivHrDlkp~NIll~~~g--------------------~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~  176 (337)
T 1o6l_A          118 LEYLHS-RDVVYRDIKLENLMLDKDG--------------------HIKITDFGLCKEGISDGATMKTFCGTPEYLAPEV  176 (337)
T ss_dssp             HHHHHH-TTCBCCCCCGGGEEECTTS--------------------CEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGG
T ss_pred             HHHHHH-CCeecCcCCHHHEEECCCC--------------------CEEEeeccchhhcccCCCcccccccChhhCChhh
Confidence            999999 9999999999999999987                    7999999999864332     2244556999999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----------
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----------  427 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----------  427 (447)
                      +.+...+.+.|+|+ +|++.++++.|..|+...........++..  ....+..+++++++||++||+.|          
T Consensus       177 ~~~~~~~~~~Diws-lG~il~ell~g~~Pf~~~~~~~~~~~i~~~--~~~~p~~~s~~~~~li~~lL~~dP~~R~g~~~~  253 (337)
T 1o6l_A          177 LEDNDYGRAVDWWG-LGVVMYEMMCGRLPFYNQDHERLFELILME--EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPS  253 (337)
T ss_dssp             GSSSCBCTTHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHC--CCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTT
T ss_pred             hcCCCCCchhhccc-chhHHHHHhcCCCCCCCCCHHHHHHHHHcC--CCCCCCCCCHHHHHHHHHHhhcCHHHhcCCCCC
Confidence            99887778889999 999999999999999765544444444433  33344678999999999999999          


Q ss_pred             CHHHHHcCCCCCCCC
Q 013230          428 SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 sa~elL~HPff~~~~  442 (447)
                      +|+|+++||||+++.
T Consensus       254 ~~~ei~~h~~f~~~~  268 (337)
T 1o6l_A          254 DAKEVMEHRFFLSIN  268 (337)
T ss_dssp             THHHHHTSGGGTTCC
T ss_pred             CHHHHHcCCCcCCCC
Confidence            699999999998764

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=5.3e-39  Score=329.18  Aligned_cols=241  Identities=20%  Similarity=0.177  Sum_probs=197.7

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+++++||+|+||.||+|++      ||+|++.....     ........+.+|+.+++.++|        ||    ||
T Consensus        70 ~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~-----~~~~~~~~~~~E~~il~~l~h--------p~----Iv  132 (410)
T 3v8s_A           70 DYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEM-----IKRSDSAFFWEERDIMAFANS--------PW----VV  132 (410)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHH-----HHTCCCSTHHHHHHHHHHCCC--------TT----BC
T ss_pred             ccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhh-----hhhHHHHHHHHHHHHHHhCCC--------CC----CC
Confidence            459999999999999999974      99999875321     112223457899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGL  283 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL  283 (447)
                      +++++|..                              ++.+|+|||||.|| +|.+++.   +++..++.++.||+.||
T Consensus       133 ~l~~~~~~------------------------------~~~~~lV~E~~~gg-~L~~~l~~~~~~e~~~~~~~~qi~~aL  181 (410)
T 3v8s_A          133 QLFYAFQD------------------------------DRYLYMVMEYMPGG-DLVNLMSNYDVPEKWARFYTAEVVLAL  181 (410)
T ss_dssp             CEEEEEEC------------------------------SSEEEEEECCCTTE-EHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEE------------------------------CCEEEEEEeCCCCC-cHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            99998643                              56799999999988 9999887   99999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE------EEecCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF------FLDLSQDPEL  357 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i------~~~~~~~pel  357 (447)
                      +|||+ +||+||||||+|||++.++                    .+||+|||+|+.....+..      ....|++||+
T Consensus       182 ~~LH~-~givHrDLKp~NILl~~~g--------------------~ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~  240 (410)
T 3v8s_A          182 DAIHS-MGFIHRDVKPDNMLLDKSG--------------------HLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEV  240 (410)
T ss_dssp             HHHHH-TTEECCCCSGGGEEECTTS--------------------CEEECCCTTCEECCTTSEEECCSCCSCGGGCCHHH
T ss_pred             HHHHH-CCeEeccCCHHHeeECCCC--------------------CEEEeccceeEeeccCCcccccCCcCCccccCHHH
Confidence            99999 9999999999999999987                    7999999999887655432      2344899999


Q ss_pred             CCCCC----CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc--cCCCCCccchHHHHHHHHHhcccc----
Q 013230          358 FSGPK----GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK--KTFDRSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       358 f~g~~----~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~--~~~~~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      +.+..    +....|+|+ +|++.++++.|..||...........++...  ..+|....+++++++||++||+.+    
T Consensus       241 l~~~~~~~~~~~~~DiwS-lGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~lL~~~~~rl  319 (410)
T 3v8s_A          241 LKSQGGDGYYGRECDWWS-VGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRL  319 (410)
T ss_dssp             HHTTTTTCEEETHHHHHH-HHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCTTCCCCHHHHHHHHHHSSCGGGCT
T ss_pred             hhccCCCcCCCCcceEec-chHHHHHHHhCCCCCCCCChhhHHHHHHhccccccCCCcccccHHHHHHHHHHccChhhhC
Confidence            87654    345679999 9999999999999997655444444444322  345555678999999999999865    


Q ss_pred             ---CHHHHHcCCCCCCCCC
Q 013230          428 ---SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       428 ---sa~elL~HPff~~~~~  443 (447)
                         +++|+++||||+++.+
T Consensus       320 gR~~~~ei~~Hp~f~~~~w  338 (410)
T 3v8s_A          320 GRNGVEEIKRHLFFKNDQW  338 (410)
T ss_dssp             TSSCHHHHHTSGGGCCSSC
T ss_pred             CCCCHHHHhcCccccCCCH
Confidence               8999999999998754

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=3.9e-39  Score=323.83  Aligned_cols=238  Identities=19%  Similarity=0.188  Sum_probs=195.9

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCcccce
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTTF  205 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~i  205 (447)
                      +|++++.||+|+||.||+|++      ||+|++.....     ......+.+.+|+.+++.+ +|        ||    |
T Consensus        24 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~-----~~~~~~~~~~~E~~il~~~~~h--------p~----I   86 (353)
T 3txo_A           24 NFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVI-----LQDDDVECTMTEKRILSLARNH--------PF----L   86 (353)
T ss_dssp             CEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHH-----HHHTTHHHHHHHHHHHHHTTTC--------TT----B
T ss_pred             heEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHh-----cchhHHHHHHHHHHHHHhccCC--------Cc----e
Confidence            459999999999999999973      99999875421     1223446788999999988 45        66    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTA  281 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~  281 (447)
                      +++++++..                              .+.+|+|||||.|| +|..++.    +++..++.++.||+.
T Consensus        87 v~l~~~~~~------------------------------~~~~~lv~E~~~gg-~L~~~l~~~~~~~~~~~~~~~~qi~~  135 (353)
T 3txo_A           87 TQLFCCFQT------------------------------PDRLFFVMEFVNGG-DLMFHIQKSRRFDEARARFYAAEIIS  135 (353)
T ss_dssp             CCEEEEEEC------------------------------SSEEEEEEECCCSC-BHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             eeEEEEEEe------------------------------CCEEEEEEeCCCCC-cHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            999999643                              56799999999988 9998876    999999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----EEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----FFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i~~~~~~~pe  356 (447)
                      ||+|||+ +||+||||||+|||++.++                    .+||+|||+|+.....+.     .....|++||
T Consensus       136 aL~~LH~-~givHrDlkp~NILl~~~g--------------------~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE  194 (353)
T 3txo_A          136 ALMFLHD-KGIIYRDLKLDNVLLDHEG--------------------HCKLADFGMCKEGICNGVTTATFCGTPDYIAPE  194 (353)
T ss_dssp             HHHHHHH-TTCBCCCCCGGGEEECTTS--------------------CEEECCCTTCBCSCC---------CCGGGCCHH
T ss_pred             HHHHHHH-CCCcccCCCHHHEEECCCC--------------------CEEEccccceeecccCCccccccCCCcCeEChh
Confidence            9999999 9999999999999999987                    799999999986443321     2334589999


Q ss_pred             CCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CH--
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SA--  429 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa--  429 (447)
                      ++.+..++.+.|+|+ +|++.++++.|..||...........++..  .+..+..+++++++||++||++|     ++  
T Consensus       195 ~~~~~~~~~~~Diws-lG~il~ell~G~~Pf~~~~~~~~~~~i~~~--~~~~p~~~~~~~~~li~~lL~~dP~~R~~~~~  271 (353)
T 3txo_A          195 ILQEMLYGPAVDWWA-MGVLLYEMLCGHAPFEAENEDDLFEAILND--EVVYPTWLHEDATGILKSFMTKNPTMRLGSLT  271 (353)
T ss_dssp             HHHHHHCTTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHC--CCCCCTTSCHHHHHHHHHHTCSSGGGSTTSGG
T ss_pred             hcCCCCcCCccCCCc-chHHHHHHHhCCCCCCCCCHHHHHHHHHcC--CCCCCCCCCHHHHHHHHHHhhhCHHHccCCcc
Confidence            998877778889999 999999999999999776555555555533  33344568999999999999999     66  


Q ss_pred             ----HHHHcCCCCCCCC
Q 013230          430 ----KEAIFDPFFSDLI  442 (447)
Q Consensus       430 ----~elL~HPff~~~~  442 (447)
                          +|+++||||+++.
T Consensus       272 ~~~~~~il~hp~f~~~~  288 (353)
T 3txo_A          272 QGGEHAILRHPFFKEID  288 (353)
T ss_dssp             GTCTHHHHTSGGGTTCC
T ss_pred             cCCHHHHhhCCcccCCC
Confidence                8999999999874

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=2.6e-38  Score=309.49  Aligned_cols=235  Identities=20%  Similarity=0.251  Sum_probs=196.4

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+++++||+|+||.||+|++      ||+|++....        ....+.+.+|+.+++.++|        ||    |++
T Consensus        22 y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--------~~~~~~~~~E~~~l~~l~h--------p~----iv~   81 (297)
T 3fxz_A           22 YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQ--------QPKKELIINEILVMRENKN--------PN----IVN   81 (297)
T ss_dssp             BCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGG--------CSCHHHHHHHHHHHHHCCC--------TT----BCC
T ss_pred             eeeeeeeccCCCeEEEEEEECCCCcEEEEEEeeccc--------ccHHHHHHHHHHHHhcCCC--------CC----CCe
Confidence            39999999999999999963      9999987542        2234678999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~  284 (447)
                      +++++..                              .+.+|+||||+.|| +|.+++.   +++..++.++.||+.||+
T Consensus        82 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~qi~~~l~  130 (297)
T 3fxz_A           82 YLDSYLV------------------------------GDELWVVMEYLAGG-SLTDVVTETCMDEGQIAAVCRECLQALE  130 (297)
T ss_dssp             EEEEEEE------------------------------TTEEEEEEECCTTC-BHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred             EeEEEEE------------------------------CCEEEEEEECCCCC-CHHHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence            9999754                              56699999999988 9999987   999999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPELFS  359 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pelf~  359 (447)
                      |||+ .||+||||||+|||++.++                    .+||+|||+|+......     ......|++||++.
T Consensus       131 ~lH~-~~i~H~Dlkp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~  189 (297)
T 3fxz_A          131 FLHS-NQVIHRDIKSDNILLGMDG--------------------SVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVT  189 (297)
T ss_dssp             HHHH-TTEECCCCSGGGEEECTTC--------------------CEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHH
T ss_pred             HHHh-CCceeCCCCHHHEEECCCC--------------------CEEEeeCCCceecCCcccccCCccCCcCccChhhhc
Confidence            9999 9999999999999999987                    79999999998765432     22344589999998


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh-ccCCCCCccchHHHHHHHHHhcccc-----CHHHHH
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL-KKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAI  433 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~-~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL  433 (447)
                      +...+.+.|||+ +|.+.+++++|..||............... ...+..+..+++++++||.+||..|     |++|+|
T Consensus       190 ~~~~~~~~Diws-lG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell  268 (297)
T 3fxz_A          190 RKAYGPKVDIWS-LGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELL  268 (297)
T ss_dssp             CSCBCTHHHHHH-HHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHT
T ss_pred             CCCCCcHHHHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCccccCHHHHHHHHHHccCChhHCcCHHHHh
Confidence            888888889999 999999999999998765433333333221 2344456678999999999999999     999999


Q ss_pred             cCCCCCCC
Q 013230          434 FDPFFSDL  441 (447)
Q Consensus       434 ~HPff~~~  441 (447)
                      +||||+..
T Consensus       269 ~h~~~~~~  276 (297)
T 3fxz_A          269 QHQFLKIA  276 (297)
T ss_dssp             TCGGGGGC
T ss_pred             hChhhccc
Confidence            99999854

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=6.5e-39  Score=331.05  Aligned_cols=242  Identities=18%  Similarity=0.182  Sum_probs=195.3

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+++++||+|+||+||+|++      ||+|++.....     ........+.+|+.++..++|        ||    |+
T Consensus        75 ~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~-----~~~~~~~~~~~E~~il~~~~h--------p~----Iv  137 (437)
T 4aw2_A           75 DFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEM-----LKRAETACFREERDVLVNGDS--------KW----IT  137 (437)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHH-----HHTTTTCCHHHHHHHHHHSCT--------TT----BC
T ss_pred             heEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHh-----hhHHHHHHHHHHHHHHHhCCC--------CC----EE
Confidence            459999999999999999973      99999875321     111223447899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      +++++|..                              ++.+|+|||||.|| +|.+++.     +++..++.++.||+.
T Consensus       138 ~l~~~~~~------------------------------~~~~~lV~Ey~~gg-~L~~~l~~~~~~l~e~~~~~~~~qi~~  186 (437)
T 4aw2_A          138 TLHYAFQD------------------------------DNNLYLVMDYYVGG-DLLTLLSKFEDRLPEEMARFYLAEMVI  186 (437)
T ss_dssp             CEEEEEEC------------------------------SSEEEEEECCCTTC-BHHHHHHTTTTCCCHHHHHHHHHHHHH
T ss_pred             EEEEEEee------------------------------CCEEEEEEecCCCC-cHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence            99998543                              56799999999988 9999875     899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE------EEEecCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI------FFLDLSQDP  355 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~------i~~~~~~~p  355 (447)
                      ||+|||+ .|||||||||+|||++.++                    .+||+|||+|+.....+.      +....|++|
T Consensus       187 aL~~LH~-~giiHrDLKp~NILl~~~g--------------------~vkL~DFGla~~~~~~~~~~~~~~~GT~~Y~AP  245 (437)
T 4aw2_A          187 AIDSVHQ-LHYVHRDIKPDNILMDMNG--------------------HIRLADFGSCLKLMEDGTVQSSVAVGTPDYISP  245 (437)
T ss_dssp             HHHHHHH-TTEECCCCSGGGEEECTTS--------------------CEEECCCTTCEECCTTSCEECCSCCSCGGGCCH
T ss_pred             HHHHHHh-CCeEecccCHHHeeEcCCC--------------------CEEEcchhhhhhcccCCCcccccccCCcCeeCh
Confidence            9999999 9999999999999999987                    799999999987655432      233458999


Q ss_pred             CCCC-----CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhcc--CCCC-CccchHHHHHHHHHhcccc
Q 013230          356 ELFS-----GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKK--TFDR-SSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       356 elf~-----g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~--~~~~-~~~~s~~l~dLl~~mL~~d  427 (447)
                      |++.     +..++...|+|+ +|++.++++.|..||...........++....  .+|. ...++++++|||++||+.+
T Consensus       246 E~l~~~~~~~~~~~~~~DvwS-lGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~dLi~~lL~~~  324 (437)
T 4aw2_A          246 EILQAMEGGKGRYGPECDWWS-LGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPTQVTDVSENAKDLIRRLICSR  324 (437)
T ss_dssp             HHHHHHHTSCCEECTHHHHHH-HHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCSSCCCSCHHHHHHHHTTSSCG
T ss_pred             HHHhhcccCCCCCCCcCeeHH-HHHHHHHHHhCCCCCCCCChhHHHHhhhhccccccCCcccccCCHHHHHHHHHHhccc
Confidence            9986     334566779999 99999999999999976554444444443222  3332 2458999999999999876


Q ss_pred             -------CHHHHHcCCCCCCCCCC
Q 013230          428 -------SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       428 -------sa~elL~HPff~~~~~~  444 (447)
                             +++|+++||||+++.++
T Consensus       325 ~~r~~r~~~~eil~Hpff~~i~w~  348 (437)
T 4aw2_A          325 EHRLGQNGIEDFKKHPFFSGIDWD  348 (437)
T ss_dssp             GGCTTTTTTHHHHTSGGGTTCCTT
T ss_pred             ccccCCCCHHHHhCCCccCCCCHH
Confidence                   89999999999987643

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=1.4e-38  Score=315.15  Aligned_cols=238  Identities=19%  Similarity=0.225  Sum_probs=198.2

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|++      ||+|++.....     ......+.+.+|+.+++.++|        ||    |+
T Consensus         7 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~E~~~l~~l~h--------p~----Iv   69 (318)
T 1fot_A            7 DFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIV-----VRLKQVEHTNDERLMLSIVTH--------PF----II   69 (318)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHH-----HHTTCHHHHHHHHHHHHSCCB--------TT----BC
T ss_pred             HcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHh-----hhhhHHHHHHHHHHHHhhCCC--------CC----Cc
Confidence            359999999999999999973      99999875421     122345678899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              .+.+|+||||+.|| +|.+++.    +++..++.++.||+.|
T Consensus        70 ~~~~~~~~------------------------------~~~~~lv~e~~~gg-~L~~~l~~~~~~~~~~~~~~~~qi~~a  118 (318)
T 1fot_A           70 RMWGTFQD------------------------------AQQIFMIMDYIEGG-ELFSLLRKSQRFPNPVAKFYAAEVCLA  118 (318)
T ss_dssp             CEEEEEEC------------------------------SSEEEEEECCCCSC-BHHHHHHHTSSCCHHHHHHHHHHHHHH
T ss_pred             eEeEEEEe------------------------------CCEEEEEEeCCCCC-CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            99998543                              56799999999988 9999886    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC--EEEEecCCCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED--IFFLDLSQDPELFSG  360 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g--~i~~~~~~~pelf~g  360 (447)
                      |+|||+ +||+||||||+|||++.++                    .+||+|||+|+......  ......|++||++.+
T Consensus       119 L~~LH~-~~ivHrDlkp~NIll~~~g--------------------~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~  177 (318)
T 1fot_A          119 LEYLHS-KDIIYRDLKPENILLDKNG--------------------HIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVST  177 (318)
T ss_dssp             HHHHHT-TTEECCCCCGGGEEECTTS--------------------CEEECCCSSCEECSSCBCCCCSCTTTCCHHHHTT
T ss_pred             HHHHHH-CCccccCCChheEEEcCCC--------------------CEEEeecCcceecCCccccccCCccccCHhHhcC
Confidence            999999 9999999999999999887                    79999999998765432  123345899999988


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----------CHH
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----------SAK  430 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----------sa~  430 (447)
                      ...+.+.|+|+ +|++.++++.|..||...........++..  .+..+..+++++++||++||..|          +++
T Consensus       178 ~~~~~~~Diws-lG~il~ell~g~~pf~~~~~~~~~~~i~~~--~~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~  254 (318)
T 1fot_A          178 KPYNKSIDWWS-FGILIYEMLAGYTPFYDSNTMKTYEKILNA--ELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTE  254 (318)
T ss_dssp             CCBCTTHHHHH-HHHHHHHHHHSSCTTCCSSHHHHHHHHHHC--CCCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTH
T ss_pred             CCCCcccchhh-hHHHHHHHHhCCCCCCCCCHHHHHHHHHhC--CCCCCCCCCHHHHHHHHHHhccCHHHcCCCcCCCHH
Confidence            77778889999 999999999999999765544445555533  33444678999999999999998          689


Q ss_pred             HHHcCCCCCCCC
Q 013230          431 EAIFDPFFSDLI  442 (447)
Q Consensus       431 elL~HPff~~~~  442 (447)
                      |+++||||+++.
T Consensus       255 ~i~~hp~f~~~~  266 (318)
T 1fot_A          255 DVKNHPWFKEVV  266 (318)
T ss_dssp             HHHTSGGGSSCC
T ss_pred             HHhcCccccCCC
Confidence            999999999764

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=3.2e-38  Score=321.86  Aligned_cols=239  Identities=18%  Similarity=0.196  Sum_probs=192.1

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCcccce
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTTF  205 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~i  205 (447)
                      +|+++++||+|+||+||+|++      ||+|++.....     ........+.+|..+++.+ +|        ||    |
T Consensus        53 ~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~-----~~~~~~~~~~~E~~il~~~~~h--------p~----I  115 (396)
T 4dc2_A           53 DFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELV-----NDDEDIDWVQTEKHVFEQASNH--------PF----L  115 (396)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGT-----C----CCHHHHHHHHHHHHTTC--------TT----B
T ss_pred             HcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhc-----cCHHHHHHHHHHHHHHHhcCCC--------CC----c
Confidence            349999999999999999973      99999986532     2223345678999999887 56        77    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTA  281 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~  281 (447)
                      |+++++|..                              ++.+|+||||+.|| +|..++.    +++..++.++.||+.
T Consensus       116 v~l~~~~~~------------------------------~~~~~lV~E~~~gg-~L~~~l~~~~~l~~~~~~~~~~qi~~  164 (396)
T 4dc2_A          116 VGLHSCFQT------------------------------ESRLFFVIEYVNGG-DLMFHMQRQRKLPEEHARFYSAEISL  164 (396)
T ss_dssp             CCEEEEEEC------------------------------SSEEEEEEECCTTC-BHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             CeeEEEEEE------------------------------CCEEEEEEEcCCCC-cHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            999998643                              56799999999988 9988876    999999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pe  356 (447)
                      ||+|||+ .||+||||||+|||++.++                    .+||+|||+|+.....     .......|++||
T Consensus       165 aL~~LH~-~givHrDLKp~NILl~~~g--------------------~ikL~DFGla~~~~~~~~~~~~~~gt~~Y~aPE  223 (396)
T 4dc2_A          165 ALNYLHE-RGIIYRDLKLDNVLLDSEG--------------------HIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPE  223 (396)
T ss_dssp             HHHHHHH-TTCBCCCCCGGGEEECTTS--------------------CEEECCCTTCBCCCCTTCCBCCCCBCGGGCCHH
T ss_pred             HHHHHHH-CCEEeccCCHHHEEECCCC--------------------CEEEeecceeeecccCCCccccccCCcccCCch
Confidence            9999999 9999999999999999987                    7999999999864322     122345589999


Q ss_pred             CCCCCCCCchHHHHHhhccCCcccccCCCCCChh--------HHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV--------LWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-  427 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~--------~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-  427 (447)
                      ++.+..++...|+|+ +|++.++++.|..||...        .....+...+. ...+..+..+++++++||++||+.| 
T Consensus       224 ~l~~~~~~~~~Diws-lGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~-~~~~~~p~~~s~~~~~li~~lL~~dP  301 (396)
T 4dc2_A          224 ILRGEDYGFSVDWWA-LGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVIL-EKQIRIPRSLSVKAASVLKSFLNKDP  301 (396)
T ss_dssp             HHTTCCBCTHHHHHH-HHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHH-HCCCCCCTTSCHHHHHHHHHHTCSCT
T ss_pred             hhcCCCCChHHHHHH-HHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHh-ccccCCCCcCCHHHHHHHHHHhcCCH
Confidence            999988888889999 999999999999998521        01112222222 2344445678999999999999999 


Q ss_pred             ----C------HHHHHcCCCCCCCC
Q 013230          428 ----S------AKEAIFDPFFSDLI  442 (447)
Q Consensus       428 ----s------a~elL~HPff~~~~  442 (447)
                          +      ++|+++||||+++.
T Consensus       302 ~~R~~~~~~~~~~ei~~Hpff~~i~  326 (396)
T 4dc2_A          302 KERLGCHPQTGFADIQGHPFFRNVD  326 (396)
T ss_dssp             TTSTTCSTTTHHHHHHHSTTTTTCC
T ss_pred             hHcCCCCCCCCHHHHhcCccccCCC
Confidence                5      48999999999874

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=6.2e-38  Score=316.03  Aligned_cols=246  Identities=19%  Similarity=0.200  Sum_probs=198.3

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|++      ||+|++......  ........+.+.+|+.+++.++|        ||    |++
T Consensus        14 y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~--~~~~~~~~~~~~~E~~il~~l~h--------pn----Iv~   79 (361)
T 2yab_A           14 YDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSR--ASRRGVCREEIEREVSILRQVLH--------PN----IIT   79 (361)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSST--TCSSSBCHHHHHHHHHHHTTCCC--------TT----BCC
T ss_pred             eEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccc--cccchhHHHHHHHHHHHHHhCCC--------cC----CCc
Confidence            49999999999999999973      999999865431  01111234678999999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      ++++|..                              .+.+|+||||+.|| +|.+++.    +++..++.++.||+.||
T Consensus        80 l~~~~~~------------------------------~~~~~lv~e~~~gg-~L~~~l~~~~~l~~~~~~~i~~qi~~aL  128 (361)
T 2yab_A           80 LHDVYEN------------------------------RTDVVLILELVSGG-ELFDFLAQKESLSEEEATSFIKQILDGV  128 (361)
T ss_dssp             EEEEEEC------------------------------SSEEEEEEECCCSC-BHHHHHTTCSCCBHHHHHHHHHHHHHHH
T ss_pred             EEEEEEe------------------------------CCEEEEEEEcCCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            9999643                              56799999999988 9999886    89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPELFS  359 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pelf~  359 (447)
                      .|||+ .||+||||||+|||++.++.                ....+||+|||+|+......    ......|++||++.
T Consensus       129 ~~LH~-~givHrDlkp~NIll~~~~~----------------~~~~vkl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~  191 (361)
T 2yab_A          129 NYLHT-KKIAHFDLKPENIMLLDKNI----------------PIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVN  191 (361)
T ss_dssp             HHHHH-TTEECCCCSGGGEEESCTTS----------------SSCCEEECCCSSCEECCTTCCCCCCCSCGGGCCHHHHT
T ss_pred             HHHHH-CCcccCCCCHHHEEEeCCCC----------------CccCEEEEecCCceEcCCCCccccCCCCccEECchHHc
Confidence            99999 99999999999999987651                01159999999998765431    22344589999999


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc-----CHHHH
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN-----SAKEA  432 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d-----sa~el  432 (447)
                      +..++...|+|+ +|++.++++.|..||........+..+......++.  +..+++++++||++||..|     |++|+
T Consensus       192 ~~~~~~~~Diws-lGvil~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~  270 (361)
T 2yab_A          192 YEPLGLEADMWS-IGVITYILLSGASPFLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEA  270 (361)
T ss_dssp             TCCCCTHHHHHH-HHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             CCCCCccccHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHCCCChhHCcCHHHH
Confidence            877888889999 999999999999999765444444444433323332  2457899999999999999     99999


Q ss_pred             HcCCCCCCCC
Q 013230          433 IFDPFFSDLI  442 (447)
Q Consensus       433 L~HPff~~~~  442 (447)
                      |+||||+...
T Consensus       271 l~hp~~~~~~  280 (361)
T 2yab_A          271 LRHPWITPVD  280 (361)
T ss_dssp             HTSTTTSCSS
T ss_pred             hcCcCcCCCc
Confidence            9999999653

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=6e-38  Score=314.73  Aligned_cols=237  Identities=17%  Similarity=0.185  Sum_probs=198.8

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|++      ||+|++.....     ......+.+.+|+.+++.++|        ||    |++
T Consensus        43 y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~E~~~l~~l~h--------p~----iv~  105 (350)
T 1rdq_E           43 FDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKV-----VKLKQIEHTLNEKRILQAVNF--------PF----LVK  105 (350)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHH-----HHTTCHHHHHHHHHHHTTCCC--------TT----BCC
T ss_pred             CEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHh-----ccHHHHHHHHHHHHHHHhCCC--------CC----CCe
Confidence            49999999999999999973      99999875421     222345678999999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++..                              .+.+|+||||+.|| +|.+++.    +++..++.++.||+.||
T Consensus       106 ~~~~~~~------------------------------~~~~~lv~e~~~gg-~L~~~l~~~~~~~~~~~~~~~~qi~~aL  154 (350)
T 1rdq_E          106 LEFSFKD------------------------------NSNLYMVMEYVAGG-EMFSHLRRIGRFSEPHARFYAAQIVLTF  154 (350)
T ss_dssp             EEEEEEC------------------------------SSEEEEEEECCTTC-BHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             EEEEEEc------------------------------CCEEEEEEcCCCCC-cHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            9998543                              56799999999988 9998886    89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--CEEEEecCCCCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--DIFFLDLSQDPELFSGP  361 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--g~i~~~~~~~pelf~g~  361 (447)
                      +|||+ +||+||||||+|||++.++                    .+||+|||+|+.....  .......|++||++.+.
T Consensus       155 ~~LH~-~~ivHrDlkp~NIll~~~g--------------------~~kL~DFg~a~~~~~~~~~~~gt~~y~aPE~~~~~  213 (350)
T 1rdq_E          155 EYLHS-LDLIYRDLKPENLLIDQQG--------------------YIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSK  213 (350)
T ss_dssp             HHHHH-TTEECCCCSGGGEEECTTS--------------------CEEECCCTTCEECSSCBCCCEECGGGCCHHHHTTC
T ss_pred             HHHHH-CCcccccCccceEEECCCC--------------------CEEEcccccceeccCCcccccCCccccCHHHhcCC
Confidence            99999 9999999999999999887                    7999999999876544  23445669999999987


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C-----HHH
Q 013230          362 KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S-----AKE  431 (447)
Q Consensus       362 ~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s-----a~e  431 (447)
                      ..+...|+|+ +|++.++++.|..|+...........+...  .+..+..+++++++||++||+.|     +     ++|
T Consensus       214 ~~~~~~Diws-lG~il~ell~g~~Pf~~~~~~~~~~~i~~~--~~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~e  290 (350)
T 1rdq_E          214 GYNKAVDWWA-LGVLIYEMAAGYPPFFADQPIQIYEKIVSG--KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVND  290 (350)
T ss_dssp             CBCTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHC--CCCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHH
T ss_pred             CCCCcCCEec-ccHhHhHHhhCCCCCCCCCHHHHHHHHHcC--CCCCCCCCCHHHHHHHHHHhhcCHHhccCCccCCHHH
Confidence            7788889999 999999999999999765444444444433  33444678999999999999999     4     999


Q ss_pred             HHcCCCCCCCC
Q 013230          432 AIFDPFFSDLI  442 (447)
Q Consensus       432 lL~HPff~~~~  442 (447)
                      +++||||+++.
T Consensus       291 i~~h~~f~~~~  301 (350)
T 1rdq_E          291 IKNHKWFATTD  301 (350)
T ss_dssp             HHTSGGGTTCC
T ss_pred             HHhCcCcCCCC
Confidence            99999998764

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=4.4e-38  Score=316.17  Aligned_cols=238  Identities=16%  Similarity=0.165  Sum_probs=195.6

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCcccce
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTTF  205 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~i  205 (447)
                      +|++++.||+|+||.||+|++      ||+|++.....     ......+.+.+|..++..+ +|        ||    |
T Consensus        21 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~-----~~~~~~~~~~~E~~~l~~~~~h--------p~----i   83 (353)
T 2i0e_A           21 DFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVV-----IQDDDVECTMVEKRVLALPGKP--------PF----L   83 (353)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHH-----HHTTCHHHHHHHHHHHTCTTCC--------TT----B
T ss_pred             HcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHh-----hcchHHHHHHHHHHHHHhcCCC--------CE----E
Confidence            459999999999999999973      99999875421     1223446788999999887 44        66    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTA  281 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~  281 (447)
                      +++++++..                              .+.+|+||||+.|| +|.+++.    +++..++.++.||+.
T Consensus        84 v~l~~~~~~------------------------------~~~~~lv~E~~~gg-~L~~~l~~~~~~~~~~~~~~~~qi~~  132 (353)
T 2i0e_A           84 TQLHSCFQT------------------------------MDRLYFVMEYVNGG-DLMYHIQQVGRFKEPHAVFYAAEIAI  132 (353)
T ss_dssp             CCEEEEEEC------------------------------SSEEEEEEECCCSC-BHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             eeEEEEEEc------------------------------CCEEEEEEeCCCCC-cHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            999998543                              56799999999988 9998876    999999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pe  356 (447)
                      ||+|||+ .||+||||||+|||++.++                    .+||+|||+|+.....+     ......|++||
T Consensus       133 aL~~LH~-~givHrDlkp~NIll~~~g--------------------~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE  191 (353)
T 2i0e_A          133 GLFFLQS-KGIIYRDLKLDNVMLDSEG--------------------HIKIADFGMCKENIWDGVTTKTFCGTPDYIAPE  191 (353)
T ss_dssp             HHHHHHH-TTCBCCCCCGGGEEECTTS--------------------CEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHH
T ss_pred             HHHHHHH-CCEEeccCCHHHEEEcCCC--------------------cEEEEeCCcccccccCCcccccccCCccccChh
Confidence            9999999 9999999999999999987                    79999999998643321     12334589999


Q ss_pred             CCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc---------
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN---------  427 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d---------  427 (447)
                      ++.+...+...|+|+ +|++.++++.|..||...........++..  .+..+..+++++++||++||..|         
T Consensus       192 ~~~~~~~~~~~Diws-lG~il~ell~G~~Pf~~~~~~~~~~~i~~~--~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~  268 (353)
T 2i0e_A          192 IIAYQPYGKSVDWWA-FGVLLYEMLAGQAPFEGEDEDELFQSIMEH--NVAYPKSMSKEAVAICKGLMTKHPGKRLGCGP  268 (353)
T ss_dssp             HHTTCCBSTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHC--CCCCCTTSCHHHHHHHHHHTCSCTTSCTTCST
T ss_pred             hhcCCCcCCcccccc-hHHHHHHHHcCCCCCCCCCHHHHHHHHHhC--CCCCCCCCCHHHHHHHHHHhhcCHHHcCCCCC
Confidence            998877788889999 999999999999999765544444555533  33344678999999999999999         


Q ss_pred             -CHHHHHcCCCCCCCC
Q 013230          428 -SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 -sa~elL~HPff~~~~  442 (447)
                       +++|+++||||+++.
T Consensus       269 ~~~~~i~~h~~f~~~~  284 (353)
T 2i0e_A          269 EGERDIKEHAFFRYID  284 (353)
T ss_dssp             THHHHHHTSGGGTTCC
T ss_pred             CCHHHHhcCccccCCC
Confidence             379999999999764

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.3e-38  Score=323.50  Aligned_cols=241  Identities=18%  Similarity=0.159  Sum_probs=193.7

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|++      ||+|++.....     ......+.+.+|+.++..++|        ||    |+
T Consensus        62 ~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~-----~~~~~~~~~~~E~~il~~~~h--------p~----Iv  124 (412)
T 2vd5_A           62 DFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDM-----LKRGEVSCFREERDVLVNGDR--------RW----IT  124 (412)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHH-----HHHGGGCCHHHHHHHHHHSCT--------TT----BC
T ss_pred             hEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHh-----hhHHHHHHHHHHHHHHHhcCC--------CC----ee
Confidence            459999999999999999973      99999874321     112233457899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      +++++|..                              ++.+|+||||+.|| +|.+++.     +++..++.++.||+.
T Consensus       125 ~l~~~~~~------------------------------~~~~~lVmE~~~gg-~L~~~l~~~~~~l~~~~~~~~~~qi~~  173 (412)
T 2vd5_A          125 QLHFAFQD------------------------------ENYLYLVMEYYVGG-DLLTLLSKFGERIPAEMARFYLAEIVM  173 (412)
T ss_dssp             CEEEEEEC------------------------------SSEEEEEECCCCSC-BHHHHHHHHSSCCCHHHHHHHHHHHHH
T ss_pred             eEEEEEee------------------------------CCEEEEEEcCCCCC-cHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            99998543                              56799999999988 9999875     899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE------EEEecCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI------FFLDLSQDP  355 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~------i~~~~~~~p  355 (447)
                      ||+|||+ +||+||||||+|||++.++                    .+||+|||+|+.....+.      .....|++|
T Consensus       174 aL~~LH~-~giiHrDLKp~NILld~~g--------------------~vkL~DFGla~~~~~~~~~~~~~~~Gt~~Y~AP  232 (412)
T 2vd5_A          174 AIDSVHR-LGYVHRDIKPDNILLDRCG--------------------HIRLADFGSCLKLRADGTVRSLVAVGTPDYLSP  232 (412)
T ss_dssp             HHHHHHH-TTEECCCCSGGGEEECTTS--------------------CEEECCCTTCEECCTTSCEECSSCCSCGGGCCH
T ss_pred             HHHHHHH-CCeeecccCHHHeeecCCC--------------------CEEEeechhheeccCCCccccceeccccCcCCH
Confidence            9999999 9999999999999999987                    799999999987655432      223458999


Q ss_pred             CCCC-------CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc--cCCCC-CccchHHHHHHHHHhcc
Q 013230          356 ELFS-------GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK--KTFDR-SSKDERDLRSLKKRLDK  425 (447)
Q Consensus       356 elf~-------g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~--~~~~~-~~~~s~~l~dLl~~mL~  425 (447)
                      |++.       +..++...|+|+ +|++.++++.|..||...........++...  ..+|. +..+++++++||++||+
T Consensus       233 E~l~~~~~~~~~~~~~~~~DiwS-lGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~dli~~lL~  311 (412)
T 2vd5_A          233 EILQAVGGGPGTGSYGPECDWWA-LGVFAYEMFYGQTPFYADSTAETYGKIVHYKEHLSLPLVDEGVPEEARDFIQRLLC  311 (412)
T ss_dssp             HHHHHHHTCTTCSEECTHHHHHH-HHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCC----CCCHHHHHHHHTTSS
T ss_pred             HHHhhcccCcCCCCCChHHhhhH-HhHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCcCCCccccCCCHHHHHHHHHHcC
Confidence            9886       234566779999 9999999999999997654444444444322  22332 35689999999999998


Q ss_pred             cc--------CHHHHHcCCCCCCCCCC
Q 013230          426 YN--------SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       426 ~d--------sa~elL~HPff~~~~~~  444 (447)
                       +        +|+|+++||||+++.++
T Consensus       312 -~p~~Rlgr~~~~ei~~Hpff~~i~w~  337 (412)
T 2vd5_A          312 -PPETRLGRGGAGDFRTHPFFFGLDWD  337 (412)
T ss_dssp             -CGGGCTTTTTHHHHHTSGGGTTCCST
T ss_pred             -ChhhcCCCCCHHHHhcCCCcCCCCHH
Confidence             5        79999999999987654

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=4.1e-38  Score=315.41  Aligned_cols=239  Identities=19%  Similarity=0.210  Sum_probs=195.9

Q ss_pred             CCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCcccc
Q 013230          132 SDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTT  204 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~  204 (447)
                      .+|++++.||+|+||.||+|++      ||+|++.....     ......+.+..|..+++.+ +|        ||    
T Consensus        17 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~~~~~E~~il~~~~~h--------p~----   79 (345)
T 1xjd_A           17 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVV-----LMDDDVECTMVEKRVLSLAWEH--------PF----   79 (345)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHH-----HHTTCHHHHHHHHHHHHHHTTC--------TT----
T ss_pred             HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHh-----hhhhhHHHHHHHHHHHHhcCCC--------CC----
Confidence            3459999999999999999973      99999875421     1223446778999999877 66        77    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVT  280 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil  280 (447)
                      |+++++++..                              .+.+|+||||+.|| +|.+++.    +++..++.++.||+
T Consensus        80 iv~l~~~~~~------------------------------~~~~~lv~E~~~gg-~L~~~l~~~~~~~~~~~~~~~~qi~  128 (345)
T 1xjd_A           80 LTHMFCTFQT------------------------------KENLFFVMEYLNGG-DLMYHIQSCHKFDLSRATFYAAEII  128 (345)
T ss_dssp             BCCEEEEEEC------------------------------SSEEEEEEECCTTC-BHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             CCcEEEEEEe------------------------------CCEEEEEEeCCCCC-cHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            9999998543                              56799999999988 9999886    99999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDP  355 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~p  355 (447)
                      .||+|||+ +||+||||||+|||++.++                    .+||+|||+|+.....     .......|++|
T Consensus       129 ~aL~~LH~-~~ivHrDlkp~NIll~~~g--------------------~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aP  187 (345)
T 1xjd_A          129 LGLQFLHS-KGIVYRDLKLDNILLDKDG--------------------HIKIADFGMCKENMLGDAKTNTFCGTPDYIAP  187 (345)
T ss_dssp             HHHHHHHH-TTCBCCCCCGGGEEECTTS--------------------CEEECCCTTCBCCCCTTCCBCCCCSCGGGCCH
T ss_pred             HHHHHHHH-CCeEeCCCChhhEEECCCC--------------------CEEEeEChhhhhcccCCCcccCCCCCcccCCh
Confidence            99999999 9999999999999999987                    7999999999864322     11233458999


Q ss_pred             CCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      |++.+..++...|+|+ +|++.++++.|..||...........+......+  +..+++++++||++||+.|     |+.
T Consensus       188 E~~~~~~~~~~~Diws-lG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~--p~~~s~~~~~li~~lL~~dp~~R~~~~  264 (345)
T 1xjd_A          188 EILLGQKYNHSVDWWS-FGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFY--PRWLEKEAKDLLVKLFVREPEKRLGVR  264 (345)
T ss_dssp             HHHTTCCBCTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCC--CTTSCHHHHHHHHHHSCSSGGGSBTTB
T ss_pred             hhhcCCCCCChhhhHH-HHHHHHHHhcCCCCCCCCCHHHHHHHHHhCCCCC--CcccCHHHHHHHHHHhcCCHhHcCCCh
Confidence            9999877788889999 9999999999999997654444444444333333  4568999999999999999     776


Q ss_pred             -HHHcCCCCCCCC
Q 013230          431 -EAIFDPFFSDLI  442 (447)
Q Consensus       431 -elL~HPff~~~~  442 (447)
                       |+++||||+++.
T Consensus       265 ~~i~~hp~f~~~~  277 (345)
T 1xjd_A          265 GDIRQHPLFREIN  277 (345)
T ss_dssp             SCGGGSGGGTTCC
T ss_pred             HHHHcCccccCCC
Confidence             999999999874

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.7e-37  Score=302.93  Aligned_cols=245  Identities=22%  Similarity=0.276  Sum_probs=190.0

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCccccc------------------ccccchHHHHHHHHHHHhc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNG------------------EAQKKSEELLEEVVLSWTL  188 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~------------------~~~~~~~~~~~Ei~il~~L  188 (447)
                      +|++.+.||+|+||.||+|++      ||+|++.........+                  ......+.+.+|+.+++.+
T Consensus        14 ~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l   93 (298)
T 2zv2_A           14 QYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKL   93 (298)
T ss_dssp             TEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHTC
T ss_pred             ceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHhC
Confidence            459999999999999999963      9999987553211000                  0111235689999999999


Q ss_pred             cccccCCCCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--
Q 013230          189 NHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--  266 (447)
Q Consensus       189 ~h~~~~~~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--  266 (447)
                      +|        ||    |+++++++...                            ..+.+|+||||+.+| +|.+++.  
T Consensus        94 ~h--------~~----iv~~~~~~~~~----------------------------~~~~~~lv~e~~~~~-~l~~~~~~~  132 (298)
T 2zv2_A           94 DH--------PN----VVKLVEVLDDP----------------------------NEDHLYMVFELVNQG-PVMEVPTLK  132 (298)
T ss_dssp             CC--------TT----BCCEEEEEECS----------------------------SSSEEEEEEECCTTC-BSCCSSCSS
T ss_pred             CC--------CC----CCeEEEEEEcC----------------------------CCCEEEEEEecCCCC-cHHHHhhcC
Confidence            88        88    99999986431                            145699999999988 8888765  


Q ss_pred             -CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC
Q 013230          267 -LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED  345 (447)
Q Consensus       267 -l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g  345 (447)
                       +++..++.++.||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+|+......
T Consensus       133 ~~~~~~~~~~~~qi~~~l~~lH~-~~ivH~Dlkp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~  191 (298)
T 2zv2_A          133 PLSEDQARFYFQDLIKGIEYLHY-QKIIHRDIKPSNLLVGEDG--------------------HIKIADFGVSNEFKGSD  191 (298)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH-TTEECCCCCGGGEEECTTS--------------------CEEECCCTTCEECSSSS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH-CCeeccCCCHHHEEECCCC--------------------CEEEecCCCcccccccc
Confidence             8999999999999999999999 9999999999999999887                    79999999998765432


Q ss_pred             E-----EEEecCCCCCCCCCCCC---CchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHH
Q 013230          346 I-----FFLDLSQDPELFSGPKG---DKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLR  417 (447)
Q Consensus       346 ~-----i~~~~~~~pelf~g~~~---~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~  417 (447)
                      .     .....|++||.+.+...   ..+.|||+ +|.+.++++.|..|+..................++....++++++
T Consensus       192 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~s-lG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (298)
T 2zv2_A          192 ALLSNTVGTPAFMAPESLSETRKIFSGKALDVWA-MGVTLYCFVFGQCPFMDERIMCLHSKIKSQALEFPDQPDIAEDLK  270 (298)
T ss_dssp             CEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSSSCCCHHHH
T ss_pred             ccccCCcCCccccChhhhccCCCCCCCchhhhHh-HHHHHHHHHHCCCCCCCccHHHHHHHHhcccCCCCCccccCHHHH
Confidence            1     23345899999987553   45569999 999999999999998765444433333333334555567899999


Q ss_pred             HHHHHhcccc-----CHHHHHcCCCCCC
Q 013230          418 SLKKRLDKYN-----SAKEAIFDPFFSD  440 (447)
Q Consensus       418 dLl~~mL~~d-----sa~elL~HPff~~  440 (447)
                      +||.+||..|     |+.|+|+||||+.
T Consensus       271 ~li~~~l~~dp~~R~s~~e~l~hp~~~~  298 (298)
T 2zv2_A          271 DLITRMLDKNPESRIVVPEIKLHPWVTR  298 (298)
T ss_dssp             HHHHHHTCSCTTTSCCHHHHTTCHHHHC
T ss_pred             HHHHHHhhcChhhCCCHHHHhcCccccC
Confidence            9999999999     9999999999963

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.8e-38  Score=310.34  Aligned_cols=237  Identities=19%  Similarity=0.192  Sum_probs=193.9

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|++.+.||+|+||.||+|++      +|+|++....         .....+.+|+.+++.++|        ||    |+
T Consensus         6 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~---------~~~~~~~~E~~~l~~l~h--------pn----Iv   64 (321)
T 1tki_A            6 KYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG---------TDQVLVKKEISILNIARH--------RN----IL   64 (321)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT---------HHHHHHHHHHHHHHHSCC--------TT----BC
T ss_pred             ceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc---------ccHHHHHHHHHHHHhCCC--------CC----CC
Confidence            349999999999999999973      9999887432         233567899999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      ++++++..                              .+.+|+|||||.|| +|.+++.     +++..++.++.||+.
T Consensus        65 ~~~~~~~~------------------------------~~~~~lv~e~~~g~-~L~~~l~~~~~~~~~~~~~~i~~qi~~  113 (321)
T 1tki_A           65 HLHESFES------------------------------MEELVMIFEFISGL-DIFERINTSAFELNEREIVSYVHQVCE  113 (321)
T ss_dssp             CEEEEEEE------------------------------TTEEEEEECCCCCC-BHHHHHTSSSCCCCHHHHHHHHHHHHH
T ss_pred             eEeEEEec------------------------------CCEEEEEEEeCCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            99999654                              56799999999988 9998875     899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE----EEEecCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI----FFLDLSQDPEL  357 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~----i~~~~~~~pel  357 (447)
                      ||.|||+ .||+||||||+|||++.+..                  ..+||+|||+|+.......    .....|++||+
T Consensus       114 al~~lH~-~givH~Dlkp~NIl~~~~~~------------------~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~  174 (321)
T 1tki_A          114 ALQFLHS-HNIGHFDIRPENIIYQTRRS------------------STIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEV  174 (321)
T ss_dssp             HHHHHHH-TTEECCCCCGGGEEESSSSC------------------CCEEECCCTTCEECCTTCEEEEEESCGGGSCHHH
T ss_pred             HHHHHHH-CCCCcCCCCHHHEEEccCCC------------------CCEEEEECCCCeECCCCCccccccCChhhcCcHH
Confidence            9999999 99999999999999987320                  1799999999988765432    12234899999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc-----CHH
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      +.+...+...|||+ +|.+.++++.|..|+...........+......++.  ...+++++++||++||..|     |+.
T Consensus       175 ~~~~~~~~~~Diws-lG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~  253 (321)
T 1tki_A          175 HQHDVVSTATDMWS-LGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTAS  253 (321)
T ss_dssp             HTTCEECHHHHHHH-HHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHH
T ss_pred             hcCCCCCchhhHHH-HHHHHHHHHhCCCCCcCCCHHHHHHHHHcCCCCCChhhhccCCHHHHHHHHHHcCCChhHCcCHH
Confidence            98876677789999 999999999999999765544444444433323322  2357899999999999999     999


Q ss_pred             HHHcCCCCCCC
Q 013230          431 EAIFDPFFSDL  441 (447)
Q Consensus       431 elL~HPff~~~  441 (447)
                      |+|+||||++.
T Consensus       254 e~l~hp~~~~~  264 (321)
T 1tki_A          254 EALQHPWLKQK  264 (321)
T ss_dssp             HHHHSHHHHSC
T ss_pred             HHhcChhhccC
Confidence            99999999764

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=1.6e-37  Score=302.26  Aligned_cols=238  Identities=26%  Similarity=0.336  Sum_probs=185.4

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+++++||+|+||.||+|++      ||+|++....      ........+.+|+.+++.++|        ||    |+
T Consensus         3 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------~~----iv   64 (292)
T 3o0g_A            3 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDD------DDEGVPSSALREICLLKELKH--------KN----IV   64 (292)
T ss_dssp             SEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSC------SSTTHHHHHHHHHHHHTTCCC--------TT----BC
T ss_pred             CceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccC------CcCCcchHHHHHHHHHhcCCC--------CC----Ee
Confidence            459999999999999999974      9999997553      223344678899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      ++++++..                              ++.+|+||||+. | +|.+++.     +++..++.++.||+.
T Consensus        65 ~~~~~~~~------------------------------~~~~~lv~e~~~-~-~l~~~~~~~~~~l~~~~~~~~~~ql~~  112 (292)
T 3o0g_A           65 RLHDVLHS------------------------------DKKLTLVFEFCD-Q-DLKKYFDSCNGDLDPEIVKSFLFQLLK  112 (292)
T ss_dssp             CEEEEEEE------------------------------TTEEEEEEECCS-E-EHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             eEEeEEEe------------------------------CCEEEEEEecCC-C-CHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            99999654                              567999999998 4 4554443     899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pe  356 (447)
                      ||+|||+ .||+||||||+|||++.++                    .+||+|||+|+.....     .......|++||
T Consensus       113 ~l~~lH~-~~ivH~dikp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE  171 (292)
T 3o0g_A          113 GLGFCHS-RNVLHRDLKPQNLLINRNG--------------------ELKLANFGLARAFGIPVRCYSAEVVTLWYRPPD  171 (292)
T ss_dssp             HHHHHHH-TTEECCCCSGGGEEECTTS--------------------CEEECCCTTCEECCSCCSCCCSCCSCGGGCCHH
T ss_pred             HHHHHHh-CCeecCCCCHHHEEEcCCC--------------------CEEEeecccceecCCccccccCCccccCCcChH
Confidence            9999999 9999999999999999987                    7999999999875432     122344589999


Q ss_pred             CCCCCC-CCchHHHHHhhccCCcccccCCCCCChh-HHHHHHHHHHhhccC---------------------------CC
Q 013230          357 LFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNV-LWLVYLVDMLLLKKT---------------------------FD  407 (447)
Q Consensus       357 lf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~-~~~~~~~~~l~~~~~---------------------------~~  407 (447)
                      ++.+.. ...+.|||+ +|.+.++++++..|+... .....+..+......                           ..
T Consensus       172 ~~~~~~~~~~~~Diws-lG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (292)
T 3o0g_A          172 VLFGAKLYSTSIDMWS-AGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVN  250 (292)
T ss_dssp             HHTTCSCCCTHHHHHH-HHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTT
T ss_pred             HHcCCCCcCchHHHHH-HHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcccccccccccccCCcchhh
Confidence            987755 567779999 999999999887775322 222222222110000                           00


Q ss_pred             CCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCC
Q 013230          408 RSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       408 ~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~  442 (447)
                      .....++++++||++||++|     ||+|+|+||||+++.
T Consensus       251 ~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~  290 (292)
T 3o0g_A          251 VVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFSDFC  290 (292)
T ss_dssp             TSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTC-
T ss_pred             cccccChHHHHHHHHHhccChhhCCCHHHHhcCcccccCC
Confidence            11247899999999999999     999999999999874

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=1.2e-37  Score=311.83  Aligned_cols=239  Identities=19%  Similarity=0.197  Sum_probs=192.5

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCcccce
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTTF  205 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~i  205 (447)
                      +|++++.||+|+||.||+|++      ||+|++.....     ......+.+.+|+.+++.+ +|        ||    |
T Consensus        10 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~-----~~~~~~~~~~~E~~~l~~~~~h--------p~----i   72 (345)
T 3a8x_A           10 DFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELV-----NDDEDIDWVQTEKHVFEQASNH--------PF----L   72 (345)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGS-----CSHHHHHHHHHHHHHHHHTTTC--------TT----B
T ss_pred             heEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHh-----cchHHHHHHHHHHHHHHhcCCC--------Cc----c
Confidence            359999999999999999973      99999985432     2223446688999999987 56        77    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTA  281 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~  281 (447)
                      +++++++..                              ++.+|+||||+.|| +|.+++.    +++..++.++.||+.
T Consensus        73 v~l~~~~~~------------------------------~~~~~lv~e~~~gg-~L~~~l~~~~~l~~~~~~~~~~qi~~  121 (345)
T 3a8x_A           73 VGLHSCFQT------------------------------ESRLFFVIEYVNGG-DLMFHMQRQRKLPEEHARFYSAEISL  121 (345)
T ss_dssp             CCEEEEEEC------------------------------SSEEEEEECCCCSC-BHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             CeEEEEEEe------------------------------CCEEEEEEeCCCCC-cHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            999999643                              56799999999988 9998876    999999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pe  356 (447)
                      ||+|||+ +||+||||||+|||++.++                    .+||+|||+|+.....+     ......|++||
T Consensus       122 aL~~LH~-~~ivHrDlkp~NIll~~~g--------------------~~kL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE  180 (345)
T 3a8x_A          122 ALNYLHE-RGIIYRDLKLDNVLLDSEG--------------------HIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPE  180 (345)
T ss_dssp             HHHHHHH-TTCBCCCCCGGGEEECTTS--------------------CEEECCGGGCBCSCCTTCCBCCCCSCGGGCCHH
T ss_pred             HHHHHHH-CCceecCCCHHHEEECCCC--------------------CEEEEeccccccccCCCCcccccCCCccccCcc
Confidence            9999999 9999999999999999887                    79999999998643221     12344589999


Q ss_pred             CCCCCCCCchHHHHHhhccCCcccccCCCCCChh--------HHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV--------LWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-  427 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~--------~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-  427 (447)
                      ++.+..+....|+|+ +|++.++++.|..||...        .....+...+. ......+..+++++++||++||+.| 
T Consensus       181 ~~~~~~~~~~~Diws-lG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~-~~~~~~p~~~s~~~~~li~~lL~~dP  258 (345)
T 3a8x_A          181 ILRGEDYGFSVDWWA-LGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVIL-EKQIRIPRSLSVKAASVLKSFLNKDP  258 (345)
T ss_dssp             HHTTCCBCTHHHHHH-HHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHH-HCCCCCCTTSCHHHHHHHHHHTCSST
T ss_pred             ccCCCCCChHHhHHH-HHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHH-cCCCCCCCCCCHHHHHHHHHHhcCCH
Confidence            999877778889999 999999999999998531        11112222222 2334445678999999999999999 


Q ss_pred             ----C------HHHHHcCCCCCCCC
Q 013230          428 ----S------AKEAIFDPFFSDLI  442 (447)
Q Consensus       428 ----s------a~elL~HPff~~~~  442 (447)
                          |      ++|+++||||+++.
T Consensus       259 ~~R~~~~~~~~~~~i~~hp~f~~~~  283 (345)
T 3a8x_A          259 KERLGCHPQTGFADIQGHPFFRNVD  283 (345)
T ss_dssp             TTSTTCCTTTHHHHHHTSGGGTTCC
T ss_pred             hHCCCCCCcCCHHHHhcCCccCCCC
Confidence                5      48999999999864

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=1.6e-37  Score=321.42  Aligned_cols=246  Identities=19%  Similarity=0.207  Sum_probs=198.6

Q ss_pred             hhhhhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCC
Q 013230          124 LLDLFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGD  197 (447)
Q Consensus       124 ~~~~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~  197 (447)
                      ...+.++|   ++++.||+|+||.||+|.+      +|+|++.....      .....+.+.+|+.+++.|+|       
T Consensus         6 ~~~~~~~Y---~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~------~~~~~~~~~~E~~il~~l~h-------   69 (444)
T 3soa_A            6 CTRFTEEY---QLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKL------SARDHQKLEREARICRLLKH-------   69 (444)
T ss_dssp             -CHHHHHE---EEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSC------HHHHHHHHHHHHHHHHHCCB-------
T ss_pred             cccccCCe---EEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccC------CHHHHHHHHHHHHHHHhCCC-------
Confidence            34455666   9999999999999999963      99999886532      22334678999999999998       


Q ss_pred             CCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHH
Q 013230          198 TLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEAR  273 (447)
Q Consensus       198 ~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~  273 (447)
                       ||    |+++++++..                              ++..|+|||||.|| +|.+.+.    +++..++
T Consensus        70 -pn----Iv~l~~~~~~------------------------------~~~~~lv~E~~~gg-~L~~~i~~~~~~~e~~~~  113 (444)
T 3soa_A           70 -PN----IVRLHDSISE------------------------------EGHHYLIFDLVTGG-ELFEDIVAREYYSEADAS  113 (444)
T ss_dssp             -TT----BCCEEEEEEC------------------------------SSEEEEEECCCBCC-BHHHHHHHCSCCCHHHHH
T ss_pred             -cC----CCeEEEEEEE------------------------------CCEEEEEEEeCCCC-CHHHHHHHcCCCCHHHHH
Confidence             88    9999998643                              56799999999988 8888775    8999999


Q ss_pred             HHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEE
Q 013230          274 SLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFF  348 (447)
Q Consensus       274 ~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~  348 (447)
                      .++.||+.||+|||+ .||+||||||+|||++.+..                 +..+||+|||+|+......     ...
T Consensus       114 ~i~~qil~aL~~lH~-~givHrDlKp~NIll~~~~~-----------------~~~vkL~DFG~a~~~~~~~~~~~~~~g  175 (444)
T 3soa_A          114 HCIQQILEAVLHCHQ-MGVVHRNLKPENLLLASKLK-----------------GAAVKLADFGLAIEVEGEQQAWFGFAG  175 (444)
T ss_dssp             HHHHHHHHHHHHHHH-TTCBCCCCSSTTEEESBSST-----------------TCCEEECCCSSCBCCCTTCCBCCCSCS
T ss_pred             HHHHHHHHHHHHHHH-CCccccCCCHHHEEEeccCC-----------------CCcEEEccCceeEEecCCCceeecccC
Confidence            999999999999999 99999999999999986421                 1179999999998765432     233


Q ss_pred             EecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhccc
Q 013230          349 LDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKY  426 (447)
Q Consensus       349 ~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~  426 (447)
                      ...|++||++.+..++...|||+ +|.+.++++.|..||...........+......++.  ...+++++++||.+||+.
T Consensus       176 t~~Y~APE~l~~~~~~~~~DIwS-lGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~  254 (444)
T 3soa_A          176 TPGYLSPEVLRKDPYGKPVDLWA-CGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTI  254 (444)
T ss_dssp             CGGGCCHHHHTTCCBCTHHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCS
T ss_pred             CcccCCHHHhcCCCCCCccccHH-HHHHHHHHHhCCCCCCCccHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHHcCC
Confidence            45589999999877888889999 999999999999999776555555555443334443  246899999999999999


Q ss_pred             c-----CHHHHHcCCCCCC
Q 013230          427 N-----SAKEAIFDPFFSD  440 (447)
Q Consensus       427 d-----sa~elL~HPff~~  440 (447)
                      |     ||.|+|+||||+.
T Consensus       255 dP~~Rpta~e~L~hp~~~~  273 (444)
T 3soa_A          255 NPSKRITAAEALKHPWISH  273 (444)
T ss_dssp             STTTSCCHHHHHHSCTTHH
T ss_pred             ChhHCCCHHHHhcCccccC
Confidence            9     9999999999963

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=1.8e-37  Score=307.75  Aligned_cols=238  Identities=19%  Similarity=0.208  Sum_probs=185.8

Q ss_pred             CcceEEeccccceEEEEece---------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          134 PENIVKVGEGTFGEAFLAGN---------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~---------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      |++++.||+|+||.||+|++         ||+|++......    ........+.+|+.+++.++|        ||    
T Consensus        19 y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~----~~~~~~~~~~~E~~~l~~l~h--------p~----   82 (327)
T 3a62_A           19 FELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIV----RNAKDTAHTKAERNILEEVKH--------PF----   82 (327)
T ss_dssp             EEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC------------------HHHHHHHCCC--------TT----
T ss_pred             eEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhh----hhhhHHHHHHHHHHHHHhCCC--------CC----
Confidence            49999999999999999863         999998754221    112233567889999999998        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVT  280 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil  280 (447)
                      |+++++++..                              .+.+|+||||+.|| +|.+++.    +++..++.++.||+
T Consensus        83 iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~qi~  131 (327)
T 3a62_A           83 IVDLIYAFQT------------------------------GGKLYLILEYLSGG-ELFMQLEREGIFMEDTACFYLAEIS  131 (327)
T ss_dssp             BCCEEEEEEC------------------------------SSCEEEEEECCTTE-EHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             ccceeEEEEc------------------------------CCEEEEEEeCCCCC-cHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            9999998643                              56799999999988 9998876    89999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----EEEecCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----FFLDLSQDP  355 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i~~~~~~~p  355 (447)
                      .||.|||+ .||+||||||+|||++.++                    .+||+|||+|+.....+.     .....|++|
T Consensus       132 ~al~~lH~-~~ivH~Dlkp~Nill~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aP  190 (327)
T 3a62_A          132 MALGHLHQ-KGIIYRDLKPENIMLNHQG--------------------HVKLTDFGLCKESIHDGTVTHTFCGTIEYMAP  190 (327)
T ss_dssp             HHHHHHHH-TTCCCCCCCTTTEEECTTS--------------------CEEECCCSCC----------CTTSSCCTTSCH
T ss_pred             HHHHHHHh-CCEEcccCCHHHeEECCCC--------------------cEEEEeCCcccccccCCccccccCCCcCccCH
Confidence            99999999 9999999999999999887                    799999999986443322     123458999


Q ss_pred             CCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc--------
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN--------  427 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d--------  427 (447)
                      |++.+.....+.|+|+ +|.+.++++.|..||...........++.  ..+..+..+++++++||++||..|        
T Consensus       191 E~~~~~~~~~~~Diws-lG~il~el~~g~~pf~~~~~~~~~~~i~~--~~~~~p~~~~~~~~~li~~~L~~dp~~R~~~~  267 (327)
T 3a62_A          191 EILMRSGHNRAVDWWS-LGALMYDMLTGAPPFTGENRKKTIDKILK--CKLNLPPYLTQEARDLLKKLLKRNAASRLGAG  267 (327)
T ss_dssp             HHHTTSCCCTHHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHH--TCCCCCTTSCHHHHHHHHHHSCSCGGGSTTSS
T ss_pred             hhCcCCCCCCcccchh-HHHHHHHHHHCCCCCCCCCHHHHHHHHHh--CCCCCCCCCCHHHHHHHHHHHhcCHhhccCCC
Confidence            9998877778889999 99999999999999976544444444443  233444668999999999999999        


Q ss_pred             --CHHHHHcCCCCCCCC
Q 013230          428 --SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 --sa~elL~HPff~~~~  442 (447)
                        +++|+++||||+++.
T Consensus       268 ~~~~~e~l~hp~f~~~~  284 (327)
T 3a62_A          268 PGDAGEVQAHPFFRHIN  284 (327)
T ss_dssp             TTTHHHHHHSGGGSSCC
T ss_pred             CCCHHHHHcCCcccCCC
Confidence              689999999999764

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=1.3e-37  Score=306.49  Aligned_cols=245  Identities=23%  Similarity=0.300  Sum_probs=188.7

Q ss_pred             hhhhhhccCCCcceEEeccccceEEEEece-----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCC
Q 013230          124 LLDLFSKYSDPENIVKVGEGTFGEAFLAGN-----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDT  198 (447)
Q Consensus       124 ~~~~~~~y~~~~~~~~LG~G~fG~V~~a~~-----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~  198 (447)
                      ...+.++|   +++++||+|+||.||+|++     ||+|++....      ........+.+|+.+++.++|        
T Consensus        16 ~q~l~~~y---~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------   78 (311)
T 3niz_A           16 FQGLMEKY---QKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDA------EDEGIPSTAIREISLLKELHH--------   78 (311)
T ss_dssp             EECSSCEE---EEEEEEEECSSCEEEEEEETTSCEEEEEEEC------------CHHHHHHHHHHHHHHCCC--------
T ss_pred             ecchHhhh---HhhhhccCCCCeEEEEEEECCCCEEEEEEEeccc------ccchhhHHHHHHHHHHHHcCC--------
Confidence            33455666   9999999999999999985     9999987542      223344678899999999988        


Q ss_pred             CCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHH
Q 013230          199 LNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEAR  273 (447)
Q Consensus       199 ~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~  273 (447)
                      ||    |+++++++.                              .++.+|+||||+. | +|.+++.     +++..++
T Consensus        79 p~----iv~~~~~~~------------------------------~~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~~~~~  122 (311)
T 3niz_A           79 PN----IVSLIDVIH------------------------------SERCLTLVFEFME-K-DLKKVLDENKTGLQDSQIK  122 (311)
T ss_dssp             TT----BCCEEEEEC------------------------------CSSCEEEEEECCS-E-EHHHHHHTCTTCCCHHHHH
T ss_pred             CC----EeeeeeEEc------------------------------cCCEEEEEEcCCC-C-CHHHHHHhccCCCCHHHHH
Confidence            88    999999853                              3567999999998 5 6777664     8999999


Q ss_pred             HHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEE
Q 013230          274 SLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFF  348 (447)
Q Consensus       274 ~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~  348 (447)
                      .++.||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+|+......     ...
T Consensus       123 ~~~~qi~~~l~~LH~-~~ivH~Dikp~NIl~~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~  181 (311)
T 3niz_A          123 IYLYQLLRGVAHCHQ-HRILHRDLKPQNLLINSDG--------------------ALKLADFGLARAFGIPVRSYTHEVV  181 (311)
T ss_dssp             HHHHHHHHHHHHHHH-TTEECCCCCGGGEEECTTC--------------------CEEECCCTTCEETTSCCC---CCCC
T ss_pred             HHHHHHHHHHHHHHH-CCcccCCCchHhEEECCCC--------------------CEEEccCcCceecCCCcccccCCcc
Confidence            999999999999999 9999999999999999987                    79999999998764331     123


Q ss_pred             EecCCCCCCCCCC-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh--hcc-----------------CCC-
Q 013230          349 LDLSQDPELFSGP-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL--LKK-----------------TFD-  407 (447)
Q Consensus       349 ~~~~~~pelf~g~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~--~~~-----------------~~~-  407 (447)
                      ...|++||++.+. ....+.|||+ +|.+.++++.|..||........+..+..  ...                 .+. 
T Consensus       182 t~~y~aPE~~~~~~~~~~~~Diws-lG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (311)
T 3niz_A          182 TLWYRAPDVLMGSKKYSTSVDIWS-IGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQV  260 (311)
T ss_dssp             CCTTCCHHHHTTCCSCCTHHHHHH-HHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCCC
T ss_pred             cCCcCCHHHhcCCCCCCchHHhHH-HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccchhhhccccc
Confidence            4458999998764 4566779999 99999999999988854322111111110  000                 000 


Q ss_pred             --------CCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          408 --------RSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       408 --------~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                              .....++++++||++||++|     ||+|+|+||||+++..
T Consensus       261 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~  309 (311)
T 3niz_A          261 FEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNHPYFKDLDP  309 (311)
T ss_dssp             CCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTSCT
T ss_pred             ccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhcCcccccCCc
Confidence                    01236789999999999999     9999999999998753

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=2.2e-37  Score=311.71  Aligned_cols=236  Identities=20%  Similarity=0.248  Sum_probs=188.1

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|++      ||+|++.....         ..+.+.+|+.+++.++|        ||    |++
T Consensus        22 y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~---------~~~~~~~E~~~l~~l~h--------pn----iv~   80 (361)
T 3uc3_A           22 YDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA---------IDENVQREIINHRSLRH--------PN----IVR   80 (361)
T ss_dssp             EEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT---------SCHHHHHHHHHHHHCCC--------TT----BCC
T ss_pred             EEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc---------ccHHHHHHHHHHHhCCC--------CC----CCc
Confidence            49999999999999999984      99999874321         23567899999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++..                              .+.+|+||||+.|| +|.+++.    +++..++.++.||+.||
T Consensus        81 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~i~~ql~~~L  129 (361)
T 3uc3_A           81 FKEVILT------------------------------PTHLAIIMEYASGG-ELYERICNAGRFSEDEARFFFQQLLSGV  129 (361)
T ss_dssp             EEEEEEC------------------------------SSEEEEEEECCCSC-BHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             EEEEEee------------------------------CCEEEEEEEeCCCC-CHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            9999643                              56799999999988 9998875    99999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDPELFS  359 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~pelf~  359 (447)
                      +|||+ +||+||||||+|||++.++.                  ..+||+|||+|+.....    ..+....|++||++.
T Consensus       130 ~~LH~-~~ivH~Dlkp~Nill~~~~~------------------~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~  190 (361)
T 3uc3_A          130 SYCHS-MQICHRDLKLENTLLDGSPA------------------PRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLL  190 (361)
T ss_dssp             HHHHH-TTCCSCCCCGGGEEECSSSS------------------CCEEECCCCCC---------------CTTSCHHHHH
T ss_pred             HHHHH-CCcccCCCCHHHEEEcCCCC------------------ceEEEeecCccccccccCCCCCCcCCCCcCChhhhc
Confidence            99999 99999999999999987651                  14999999999854322    234556699999998


Q ss_pred             CCCCCch-HHHHHhhccCCcccccCCCCCChh----HHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CH
Q 013230          360 GPKGDKQ-FDTYRKMKKVTEDQWEGSFPKTNV----LWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SA  429 (447)
Q Consensus       360 g~~~~~~-~di~s~lg~~~~~~~~~~~p~~~~----~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa  429 (447)
                      +...... .|||+ +|.+.++++.|..||...    .+.......+.....++....+++++++||++||++|     |+
T Consensus       191 ~~~~~~~~~Diws-lG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~  269 (361)
T 3uc3_A          191 RQEYDGKIADVWS-CGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSIPDDIRISPECCHLISRIFVADPATRISI  269 (361)
T ss_dssp             CSSCCHHHHHHHH-HHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCCCCTTSCCCHHHHHHHHHHSCSCTTTSCCH
T ss_pred             CCCCCCCeeeeeh-hHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCCCCCcCCCCHHHHHHHHHHccCChhHCcCH
Confidence            8766666 59999 999999999999998753    2233344444334455555568999999999999999     99


Q ss_pred             HHHHcCCCCCCC
Q 013230          430 KEAIFDPFFSDL  441 (447)
Q Consensus       430 ~elL~HPff~~~  441 (447)
                      .|+++||||...
T Consensus       270 ~ell~hp~f~~~  281 (361)
T 3uc3_A          270 PEIKTHSWFLKN  281 (361)
T ss_dssp             HHHHTSHHHHTT
T ss_pred             HHHHhCcchhcC
Confidence            999999999644

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=2.4e-37  Score=311.68  Aligned_cols=242  Identities=19%  Similarity=0.211  Sum_probs=197.9

Q ss_pred             hhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCc
Q 013230          128 FSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA  201 (447)
Q Consensus       128 ~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~  201 (447)
                      .++|   ++.+.||+|+||.||+|.+      ||+|++.....      .....+.+.+|+.+++.|+|        || 
T Consensus        28 ~~~y---~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~------~~~~~~~~~~E~~il~~l~h--------pn-   89 (362)
T 2bdw_A           28 SDNY---DVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKL------SARDFQKLEREARICRKLQH--------PN-   89 (362)
T ss_dssp             HHHE---EEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC------CHHHHHHHHHHHHHHHHCCC--------TT-
T ss_pred             ccCe---EEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccC------CHHHHHHHHHHHHHHHhCCC--------CC-
Confidence            4455   9999999999999999973      99999985532      22334678899999999998        88 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHH
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLV  277 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~  277 (447)
                         |+++++++..                              ++..|+||||+.|| +|.+++.    +++..++.++.
T Consensus        90 ---Iv~~~~~~~~------------------------------~~~~~lv~e~~~gg-~L~~~l~~~~~~~~~~~~~~~~  135 (362)
T 2bdw_A           90 ---IVRLHDSIQE------------------------------ESFHYLVFDLVTGG-ELFEDIVAREFYSEADASHCIQ  135 (362)
T ss_dssp             ---BCCEEEEEEC------------------------------SSEEEEEECCCCSC-BHHHHHTTCSCCCHHHHHHHHH
T ss_pred             ---CCeEEEEEEe------------------------------CCEEEEEEecCCCC-CHHHHHHHcCCCCHHHHHHHHH
Confidence               9999998643                              56799999999988 8888775    89999999999


Q ss_pred             HHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCC
Q 013230          278 QVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQ  353 (447)
Q Consensus       278 Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~  353 (447)
                      ||+.||+|||+ .||+||||||+|||++.++.                 +..+||+|||+|+......    ......|+
T Consensus       136 qi~~al~~lH~-~~ivH~Dlkp~NIll~~~~~-----------------~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~  197 (362)
T 2bdw_A          136 QILESIAYCHS-NGIVHRNLKPENLLLASKAK-----------------GAAVKLADFGLAIEVNDSEAWHGFAGTPGYL  197 (362)
T ss_dssp             HHHHHHHHHHH-TTCBCCCCSGGGEEESCSST-----------------TCCEEECCCTTCBCCTTCCSCCCSCSCTTTC
T ss_pred             HHHHHHHHHHH-CCeEeccCchHHEEEecCCC-----------------CCCEEEeecCcceEecCCcccccCCCCcccc
Confidence            99999999999 99999999999999987641                 1269999999998765432    22344589


Q ss_pred             CCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCC--ccchHHHHHHHHHhcccc----
Q 013230          354 DPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRS--SKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       354 ~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~--~~~s~~l~dLl~~mL~~d----  427 (447)
                      +||++.+..++...|||+ +|++.++++.|..||...........+......++.+  ..+++++++||.+||..|    
T Consensus       198 aPE~~~~~~~~~~~Diws-lG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R  276 (362)
T 2bdw_A          198 SPEVLKKDPYSKPVDIWA-CGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKR  276 (362)
T ss_dssp             CHHHHTTCCCCTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTGGGGSCHHHHHHHHHHSCSSGGGS
T ss_pred             CHHHHccCCCCchhhHHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHcCCChhhC
Confidence            999999887888889999 9999999999999997655444444444333344432  467999999999999999    


Q ss_pred             -CHHHHHcCCCCCC
Q 013230          428 -SAKEAIFDPFFSD  440 (447)
Q Consensus       428 -sa~elL~HPff~~  440 (447)
                       |+.|+|+||||+.
T Consensus       277 ~t~~e~l~hp~~~~  290 (362)
T 2bdw_A          277 ITADQALKVPWICN  290 (362)
T ss_dssp             CCHHHHTTSHHHHT
T ss_pred             cCHHHHhcCcccCC
Confidence             9999999999964

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=9.6e-38  Score=322.78  Aligned_cols=239  Identities=19%  Similarity=0.208  Sum_probs=188.4

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+++++||+|+||.||+|++      ||+|++.....     ........+.+|+.+++.++|        ||    |+
T Consensus       149 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~~~~~e~~~l~~l~h--------~~----iv  211 (446)
T 4ejn_A          149 EFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVI-----VAKDEVAHTLTENRVLQNSRH--------PF----LT  211 (446)
T ss_dssp             GEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHH-----C-------------CCCCCSC--------TT----SC
T ss_pred             HcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhh-----hhhHHHHHHHHHHHHHHhCCC--------Ce----Ee
Confidence            359999999999999999973      99999874321     122233567889999998888        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              .+.+|+||||+.|| +|..++.    +++..++.++.||+.|
T Consensus       212 ~l~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~qi~~a  260 (446)
T 4ejn_A          212 ALKYSFQT------------------------------HDRLCFVMEYANGG-ELFFHLSRERVFSEDRARFYGAEIVSA  260 (446)
T ss_dssp             CEEEEEEE------------------------------TTEEEEEECCCSSC-BHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             eEEEEEee------------------------------CCEEEEEEeeCCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            99999654                              56799999999988 9988876    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----EEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----FFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i~~~~~~~pel  357 (447)
                      |+|||+..||+||||||+|||++.++                    .+||+|||+|+.....+.     .....|++||+
T Consensus       261 L~~LH~~~giiHrDlkp~NIll~~~~--------------------~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~  320 (446)
T 4ejn_A          261 LDYLHSEKNVVYRDLKLENLMLDKDG--------------------HIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEV  320 (446)
T ss_dssp             HHHHHHHTCCCCCCCCGGGEEECSSS--------------------CEEECCCCCCCTTCC-----CCSSSCGGGCCHHH
T ss_pred             HHHHhhcCCEEECCCCHHHEEECCCC--------------------CEEEccCCCceeccCCCcccccccCCccccCHhh
Confidence            99999658999999999999999987                    799999999986543322     12345899999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----------
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----------  427 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----------  427 (447)
                      +.+..++...|||+ +|.+.++++.|..|+...........+...  .+..+..+++++++||.+||.+|          
T Consensus       321 ~~~~~~~~~~Diws-lG~il~ell~g~~Pf~~~~~~~~~~~i~~~--~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~  397 (446)
T 4ejn_A          321 LEDNDYGRAVDWWG-LGVVMYEMMCGRLPFYNQDHEKLFELILME--EIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSE  397 (446)
T ss_dssp             HHTSCCCTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHC--CCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTT
T ss_pred             cCCCCCCCccchhh-hHHHHHHHhhCCCCCCCCCHHHHHHHHHhC--CCCCCccCCHHHHHHHHHHcccCHHHhCCCCCC
Confidence            98888888889999 999999999999999776555555555433  33444668999999999999999          


Q ss_pred             CHHHHHcCCCCCCCC
Q 013230          428 SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 sa~elL~HPff~~~~  442 (447)
                      ||+|+++||||+++.
T Consensus       398 t~~ell~hp~f~~~~  412 (446)
T 4ejn_A          398 DAKEIMQHRFFAGIV  412 (446)
T ss_dssp             THHHHHTSGGGTTCC
T ss_pred             CHHHHHhCccccCCC
Confidence            799999999999874

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=3.7e-37  Score=303.44  Aligned_cols=265  Identities=18%  Similarity=0.255  Sum_probs=191.5

Q ss_pred             hhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCC
Q 013230          127 LFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLN  200 (447)
Q Consensus       127 ~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n  200 (447)
                      ..++|   ++++.||+|+||.||+|++      ||+|++....       .....+.+.+|+.+++.|+|        ||
T Consensus         4 ~~~~y---~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------pn   65 (332)
T 3qd2_B            4 YLTDF---EPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPN-------RELAREKVMREVKALAKLEH--------PG   65 (332)
T ss_dssp             HHHHE---EEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCS-------TTTHHHHHHHHHHHHTSCCC--------TT
T ss_pred             hhhcC---ceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCC-------chhHHHHHHHHHHHHHhCCC--------CC
Confidence            34555   9999999999999999974      9999987542       22344678999999999988        88


Q ss_pred             cccceeeeeeEEEEeCCCc--hHHHHHhhh--------------------------cccccCCCCCCCCCCCCCceEEEE
Q 013230          201 ACTTFVEMFEIKVCQGPYD--AALIQAWED--------------------------WDDKHCSENDNPKEFPENQRYIVF  252 (447)
Q Consensus       201 ~~~~iv~l~~~~~~~g~~~--~~l~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~ivm  252 (447)
                          |++++++|...+...  ..+...|-.                          +..... .........+..+|+||
T Consensus        66 ----iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lv~  140 (332)
T 3qd2_B           66 ----IVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNT-VGQLQPSSPKVYLYIQM  140 (332)
T ss_dssp             ----BCCEEEEEEECCSCHHHHHHHC---------------------------------------------CCCEEEEEE
T ss_pred             ----EeeEEEEEEEeccchhhhhhhhhhhccccccccccCCCcccccccceeeccccCcccc-cccccCCCCCceEEEEE
Confidence                999999987644211  000000000                          000000 00000011234589999


Q ss_pred             EEecCccchhhhhc-------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCccccccc
Q 013230          253 VLQHGGKDLESFVL-------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRT  325 (447)
Q Consensus       253 E~~~gG~~L~~~i~-------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~  325 (447)
                      |||.|| +|.+++.       .++..++.++.||+.||+|||+ .||+||||||+|||++.++                 
T Consensus       141 e~~~~~-~L~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~-~~ivH~Dlkp~NIll~~~~-----------------  201 (332)
T 3qd2_B          141 QLCRKE-NLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHS-KGLMHRDLKPSNIFFTMDD-----------------  201 (332)
T ss_dssp             ECCCSS-CHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHH-TTEECCCCCGGGEEECTTC-----------------
T ss_pred             EecCCC-CHHHHHhcccCccchhhHHHHHHHHHHHHHHHHHHh-CCeeecCCCcccEEEeCCC-----------------
Confidence            999988 9999876       5667799999999999999999 9999999999999999887                 


Q ss_pred             CCCcEEEeeccceeecCCCC-----------------EEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCC
Q 013230          326 FGLSVTIIDFTLSRINTGED-----------------IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKT  388 (447)
Q Consensus       326 ~~~~vkL~DFGla~~~~~~g-----------------~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~  388 (447)
                         .+||+|||+|+......                 ......|++||.+.+...+.+.|||+ +|.+.++++.+..|+.
T Consensus       202 ---~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s-lG~il~el~~~~~~~~  277 (332)
T 3qd2_B          202 ---VVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFS-LGLILFELLYSFSTQM  277 (332)
T ss_dssp             ---CEEECCCTTCEECSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHH-HHHHHHHHHSCCCCHH
T ss_pred             ---CEEEeecCcccccccchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHHH-HHHHHHHHHHcCCChh
Confidence               79999999998765431                 22445589999998877788889999 9999999999877654


Q ss_pred             hhHHHHHHHHHHhhccCCCC-CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCC
Q 013230          389 NVLWLVYLVDMLLLKKTFDR-SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       389 ~~~~~~~~~~~l~~~~~~~~-~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~  441 (447)
                      ....  ......  ...++. ....++++++||++||..|     |++|+|+||||+++
T Consensus       278 ~~~~--~~~~~~--~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~~~f~~~  332 (332)
T 3qd2_B          278 ERVR--IITDVR--NLKFPLLFTQKYPQEHMMVQDMLSPSPTERPEATDIIENAIFENL  332 (332)
T ss_dssp             HHHH--HHHHHH--TTCCCHHHHHHCHHHHHHHHHHHCSSGGGSCCHHHHHHSTTCCCC
T ss_pred             HHHH--HHHHhh--ccCCCcccccCChhHHHHHHHHccCCCCcCCCHHHHhhchhhhcC
Confidence            3211  111111  112221 2346788999999999999     99999999999975

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=1.9e-37  Score=313.91  Aligned_cols=238  Identities=19%  Similarity=0.194  Sum_probs=186.0

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHH-HHhccccccCCCCCCCcccce
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVL-SWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~i-l~~L~h~~~~~~~~~n~~~~i  205 (447)
                      +|++++.||+|+||.||+|++      ||+|++.....     ........+.+|..+ ++.++|        ||    |
T Consensus        39 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~-----~~~~~~~~~~~e~~~ll~~~~h--------p~----I  101 (373)
T 2r5t_A           39 DFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAI-----LKKKEEKHIMSERNVLLKNVKH--------PF----L  101 (373)
T ss_dssp             GEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGB-----C-------------CCBCCCCC--------TT----B
T ss_pred             heEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHh-----hhhHHHHHHHHHHHHHHHhCCC--------CC----C
Confidence            349999999999999999973      89999976532     122233456677766 455666        77    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTA  281 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~  281 (447)
                      ++++++|..                              .+.+|+||||+.|| +|.+++.    +++..++.++.||+.
T Consensus       102 v~l~~~~~~------------------------------~~~~~lv~E~~~gg-~L~~~l~~~~~~~~~~~~~~~~qi~~  150 (373)
T 2r5t_A          102 VGLHFSFQT------------------------------ADKLYFVLDYINGG-ELFYHLQRERCFLEPRARFYAAEIAS  150 (373)
T ss_dssp             CCEEEEEEC------------------------------SSEEEEEEECCCSC-BHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             CCEEEEEEe------------------------------CCEEEEEEeCCCCC-cHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            999998643                              56799999999988 9988876    899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pe  356 (447)
                      ||+|||+ +||+||||||+|||++.++                    .+||+|||+|+.....     .......|++||
T Consensus       151 aL~~LH~-~givHrDlkp~NIll~~~g--------------------~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE  209 (373)
T 2r5t_A          151 ALGYLHS-LNIVYRDLKPENILLDSQG--------------------HIVLTDFGLCKENIEHNSTTSTFCGTPEYLAPE  209 (373)
T ss_dssp             HHHHHHH-TTCCCCCCCGGGEEECTTS--------------------CEEECCCCBCGGGBCCCCCCCSBSCCCCCCCHH
T ss_pred             HHHHHHH-CCceecCCCHHHEEECCCC--------------------CEEEeeCccccccccCCCccccccCCccccCHH
Confidence            9999999 9999999999999999987                    7999999999864322     112344589999


Q ss_pred             CCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C---
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S---  428 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s---  428 (447)
                      ++.+..++...|+|+ +|++.++++.|..||...........++..  .+..+..++.++++||++||+.|     +   
T Consensus       210 ~~~~~~~~~~~Diws-lG~il~ell~G~~Pf~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~li~~lL~~dp~~R~~~~~  286 (373)
T 2r5t_A          210 VLHKQPYDRTVDWWC-LGAVLYEMLYGLPPFYSRNTAEMYDNILNK--PLQLKPNITNSARHLLEGLLQKDRTKRLGAKD  286 (373)
T ss_dssp             HHTTCCCCTHHHHHH-HHHHHHHHHHSSCTTCCSBHHHHHHHHHHS--CCCCCSSSCHHHHHHHHHHTCSSGGGSTTTTT
T ss_pred             HhCCCCCCchhhhHH-HHHHHHHHHcCCCCCCCCCHHHHHHHHHhc--ccCCCCCCCHHHHHHHHHHcccCHHhCCCCCC
Confidence            999888888889999 999999999999999765544444455432  33334668999999999999999     3   


Q ss_pred             -HHHHHcCCCCCCCC
Q 013230          429 -AKEAIFDPFFSDLI  442 (447)
Q Consensus       429 -a~elL~HPff~~~~  442 (447)
                       +.++++||||+++.
T Consensus       287 ~~~~i~~h~~f~~~~  301 (373)
T 2r5t_A          287 DFMEIKSHVFFSLIN  301 (373)
T ss_dssp             THHHHHTSGGGTTCC
T ss_pred             CHHHHhCCccccCCC
Confidence             57999999999864

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=4.2e-37  Score=312.48  Aligned_cols=238  Identities=18%  Similarity=0.229  Sum_probs=193.1

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|++      ||+|++.....     ........+.+|+.+++.++|        ||    ||+
T Consensus        17 y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~-----~~~~~~~~~~~E~~il~~l~h--------p~----Iv~   79 (384)
T 4fr4_A           17 FEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKC-----VERNEVRNVFKELQIMQGLEH--------PF----LVN   79 (384)
T ss_dssp             EEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHH-----HHTTCHHHHHHHHHHHHTCCC--------TT----BCC
T ss_pred             eEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhc-----ccHHHHHHHHHHHHHHHhCCC--------CC----CCc
Confidence            49999999999999999973      99999875422     222345678999999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      ++++|..                              .+.+|+||||+.|| +|..++.    +++..++.++.||+.||
T Consensus        80 l~~~~~~------------------------------~~~~~lv~e~~~gg-~L~~~l~~~~~l~~~~~~~~~~qi~~aL  128 (384)
T 4fr4_A           80 LWYSFQD------------------------------EEDMFMVVDLLLGG-DLRYHLQQNVHFKEETVKLFICELVMAL  128 (384)
T ss_dssp             EEEEEEC------------------------------SSEEEEEECCCTTE-EHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             EEEEEEe------------------------------CCEEEEEEecCCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            9998643                              56799999999988 9998886    89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPELFS  359 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pelf~  359 (447)
                      .|||+ .||+||||||+|||++.++                    .+||+|||+|+......    ......|++||++.
T Consensus       129 ~~LH~-~givHrDlkp~NIll~~~g--------------------~vkL~DFG~a~~~~~~~~~~~~~gt~~Y~aPE~~~  187 (384)
T 4fr4_A          129 DYLQN-QRIIHRDMKPDNILLDEHG--------------------HVHITDFNIAAMLPRETQITTMAGTKPYMAPEMFS  187 (384)
T ss_dssp             HHHHH-TTEECCCCSGGGEEECTTS--------------------CEEECCCTTCEECCTTCCBCCCCSCGGGCCGGGTC
T ss_pred             HHHHH-CCceeccCcHHHeEECCCC--------------------CEEEeccceeeeccCCCceeccCCCccccCCeeec
Confidence            99999 9999999999999999987                    79999999998764431    22344589999996


Q ss_pred             C---CCCCchHHHHHhhccCCcccccCCCCCChh---HHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc------
Q 013230          360 G---PKGDKQFDTYRKMKKVTEDQWEGSFPKTNV---LWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN------  427 (447)
Q Consensus       360 g---~~~~~~~di~s~lg~~~~~~~~~~~p~~~~---~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d------  427 (447)
                      +   ..++...|+|+ +|++.++++.|..||...   ..........  ......+..+++++++||++||..|      
T Consensus       188 ~~~~~~~~~~~DiwS-lG~il~elltG~~Pf~~~~~~~~~~~~~~~~--~~~~~~p~~~s~~~~~li~~lL~~dP~~R~s  264 (384)
T 4fr4_A          188 SRKGAGYSFAVDWWS-LGVTAYELLRGRRPYHIRSSTSSKEIVHTFE--TTVVTYPSAWSQEMVSLLKKLLEPNPDQRFS  264 (384)
T ss_dssp             CCSSCCBCTTHHHHH-HHHHHHHHHHSSCSSCCCTTSCHHHHHHHHH--HCCCCCCTTSCHHHHHHHHHHSCSSGGGSCC
T ss_pred             cCCCCCCCccceeec-hHHHHHHHHhCCCCCCCCCCccHHHHHHHHh--hcccCCCCcCCHHHHHHHHHHhcCCHhHhcc
Confidence            4   33556779999 999999999999998532   1222222222  2334445678999999999999999      


Q ss_pred             CHHHHHcCCCCCCCCC
Q 013230          428 SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       428 sa~elL~HPff~~~~~  443 (447)
                      +++++++||||+++..
T Consensus       265 ~~~~l~~hp~f~~~~w  280 (384)
T 4fr4_A          265 QLSDVQNFPYMNDINW  280 (384)
T ss_dssp             SHHHHHTSGGGTTCCH
T ss_pred             cHHHHHcChhhhcCCH
Confidence            4999999999998753

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=3.4e-37  Score=305.43  Aligned_cols=238  Identities=21%  Similarity=0.261  Sum_probs=188.3

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|++      ||+|++.....       ....+.+.+|+.+++.++|        ||    |+
T Consensus         8 ~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-------~~~~~~~~~E~~~l~~l~h--------pn----Iv   68 (323)
T 3tki_A            8 DWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA-------VDCPENIKKEICINKMLNH--------EN----VV   68 (323)
T ss_dssp             CEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC--------------CHHHHHHHHHHCCC--------TT----BC
T ss_pred             hceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccc-------cchHHHHHHHHHHHHhCCC--------CC----CC
Confidence            349999999999999999963      99999875432       1223567899999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              .+..|+|||||.|| +|.+++.    +++..++.++.||+.|
T Consensus        69 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~i~~qi~~a  117 (323)
T 3tki_A           69 KFYGHRRE------------------------------GNIQYLFLEYCSGG-ELFDRIEPDIGMPEPDAQRFFHQLMAG  117 (323)
T ss_dssp             CEEEEEEC------------------------------SSEEEEEEECCTTE-EGGGGSBTTTBCCHHHHHHHHHHHHHH
T ss_pred             eEEEEEec------------------------------CCeEEEEEEcCCCC-cHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence            99998543                              56789999999988 9999886    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-------CEEEEecCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-------DIFFLDLSQDP  355 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-------g~i~~~~~~~p  355 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+|+.....       .......|++|
T Consensus       118 L~~LH~-~givH~Dlkp~NIll~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aP  176 (323)
T 3tki_A          118 VVYLHG-IGITHRDIKPENLLLDERD--------------------NLKISDFGLATVFRYNNRERLLNKMCGTLPYVAP  176 (323)
T ss_dssp             HHHHHH-TTEECSCCSGGGEEECTTC--------------------CEEECCCTTCEECEETTEECCBCSCCSCGGGSCH
T ss_pred             HHHHHH-CCccccccchHHEEEeCCC--------------------CEEEEEeeccceeccCCcccccCCCccCcCccCc
Confidence            999999 9999999999999999987                    7999999999865322       11233458899


Q ss_pred             CCCCCCCC-CchHHHHHhhccCCcccccCCCCCChhHHH-HHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C
Q 013230          356 ELFSGPKG-DKQFDTYRKMKKVTEDQWEGSFPKTNVLWL-VYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S  428 (447)
Q Consensus       356 elf~g~~~-~~~~di~s~lg~~~~~~~~~~~p~~~~~~~-~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s  428 (447)
                      |++.+... ..+.|||+ +|.+.+++++|..|+...... .............+....+++++++||++||..|     |
T Consensus       177 E~~~~~~~~~~~~Diws-lG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t  255 (323)
T 3tki_A          177 ELLKRREFHAEPVDVWS-CGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARIT  255 (323)
T ss_dssp             HHHHCSSBCHHHHHHHH-HHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCC
T ss_pred             HHhccCCCCCCcccHHH-HHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccCCccccCCHHHHHHHHHHccCChhhCcC
Confidence            99977654 34569999 999999999999998643211 1112222122233344678999999999999999     9


Q ss_pred             HHHHHcCCCCCCCC
Q 013230          429 AKEAIFDPFFSDLI  442 (447)
Q Consensus       429 a~elL~HPff~~~~  442 (447)
                      ++|+++||||+...
T Consensus       256 ~~eil~h~~~~~~~  269 (323)
T 3tki_A          256 IPDIKKDRWYNKPL  269 (323)
T ss_dssp             HHHHTTCTTTTCCC
T ss_pred             HHHHhhChhhcccc
Confidence            99999999998653

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=3.4e-37  Score=312.56  Aligned_cols=243  Identities=21%  Similarity=0.285  Sum_probs=181.9

Q ss_pred             hhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhcc-ccccCCCCCC
Q 013230          127 LFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN-HLRRNEGDTL  199 (447)
Q Consensus       127 ~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~  199 (447)
                      +.++|   ++++.||+|+||.||+|.+      ||+|++....      ........+.+|+.+++.+. |        |
T Consensus         7 ~~~~y---~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~------~~~~~~~~~~~E~~~l~~l~~h--------~   69 (388)
T 3oz6_A            7 VLRKY---ELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAF------QNSTDAQRTFREIMILTELSGH--------E   69 (388)
T ss_dssp             HHTTE---EEEEC-------CEEEEEETTTCCEEEEEEECC--------CCHHHHHHHHHHHHHHHHTTTC--------T
T ss_pred             ccCce---EEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccc------cChHHHHHHHHHHHHHHhccCC--------C
Confidence            34555   9999999999999999963      9999886432      22334567889999999997 6        7


Q ss_pred             CcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHH
Q 013230          200 NACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLL  276 (447)
Q Consensus       200 n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~  276 (447)
                      |    |+++++++...                            +...+|+|||||. | +|..++.   +++..++.++
T Consensus        70 n----iv~l~~~~~~~----------------------------~~~~~~lv~e~~~-~-~L~~~~~~~~~~~~~~~~i~  115 (388)
T 3oz6_A           70 N----IVNLLNVLRAD----------------------------NDRDVYLVFDYME-T-DLHAVIRANILEPVHKQYVV  115 (388)
T ss_dssp             T----BCCEEEEEECT----------------------------TSSCEEEEEECCS-E-EHHHHHHHTCCCHHHHHHHH
T ss_pred             C----CCeeeeEEecC----------------------------CCCEEEEEecccC-c-CHHHHHHcCCCCHHHHHHHH
Confidence            7    99999996531                            1346999999997 5 8988887   8999999999


Q ss_pred             HHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------------
Q 013230          277 VQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------------  344 (447)
Q Consensus       277 ~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------------  344 (447)
                      .||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+|+.....            
T Consensus       116 ~qi~~~L~~LH~-~~ivHrDlkp~NIll~~~~--------------------~~kl~DFG~a~~~~~~~~~~~~~~~~~~  174 (388)
T 3oz6_A          116 YQLIKVIKYLHS-GGLLHRDMKPSNILLNAEC--------------------HVKVADFGLSRSFVNIRRVTNNIPLSIN  174 (388)
T ss_dssp             HHHHHHHHHHHH-TTEECCCCCGGGEEECTTC--------------------CEEECCCTTCEESSSCCCCCCCGGGCCC
T ss_pred             HHHHHHHHHHHh-CCEEeCCCCHHHeEEcCCC--------------------CEEecCCccccccccccccccccccccc
Confidence            999999999999 9999999999999999987                    7999999999865321            


Q ss_pred             --------------CEEEEecCCCCCCCCC-CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCC---
Q 013230          345 --------------DIFFLDLSQDPELFSG-PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTF---  406 (447)
Q Consensus       345 --------------g~i~~~~~~~pelf~g-~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~---  406 (447)
                                    ..+....|++||++.+ ..++.+.|||+ +|++.++++.|..||........+..++. ...+   
T Consensus       175 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwS-lG~il~ell~g~~pf~~~~~~~~~~~i~~-~~~~p~~  252 (388)
T 3oz6_A          175 ENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWS-LGCILGEILCGKPIFPGSSTMNQLERIIG-VIDFPSN  252 (388)
T ss_dssp             ---------------CCCGGGGCCHHHHTTCCCCCTHHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHH-HHCCCCH
T ss_pred             ccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHH-hcCCCCH
Confidence                          1122334899999877 45566779999 99999999999988865433322222210 0000   


Q ss_pred             -------------------------------------------CCCccchHHHHHHHHHhcccc-----CHHHHHcCCCC
Q 013230          407 -------------------------------------------DRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       407 -------------------------------------------~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff  438 (447)
                                                                 ......+++++|||++||++|     ||+|+|+||||
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t~~e~l~Hp~~  332 (388)
T 3oz6_A          253 EDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNKRISANDALKHPFV  332 (388)
T ss_dssp             HHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGGSCCHHHHTTSTTT
T ss_pred             HHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcccCCCHHHHhCCHHH
Confidence                                                       011256889999999999999     99999999999


Q ss_pred             CCCCC
Q 013230          439 SDLIV  443 (447)
Q Consensus       439 ~~~~~  443 (447)
                      +.+..
T Consensus       333 ~~~~~  337 (388)
T 3oz6_A          333 SIFHN  337 (388)
T ss_dssp             TTTCC
T ss_pred             HHhcC
Confidence            87643

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.1e-36  Score=302.12  Aligned_cols=245  Identities=18%  Similarity=0.214  Sum_probs=195.8

Q ss_pred             cceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      ++.+.||+|+||.||+|++      ||+|++......  ........+.+.+|+.+++.++|        ||    |+++
T Consensus        14 ~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~--~~~~~~~~~~~~~E~~~l~~l~h--------p~----iv~~   79 (326)
T 2y0a_A           14 DTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTK--SSRRGVSREDIEREVSILKEIQH--------PN----VITL   79 (326)
T ss_dssp             EEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCST--TCSSSBCHHHHHHHHHHHHHCCC--------TT----BCCE
T ss_pred             EeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccc--cccchhhHHHHHHHHHHHHhCCC--------CC----CCcE
Confidence            9999999999999999973      999998765321  11112235678999999999998        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~  284 (447)
                      ++++..                              .+.+|+||||+.|| +|.+++.    +++..++.++.||+.||.
T Consensus        80 ~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~i~~qi~~al~  128 (326)
T 2y0a_A           80 HEVYEN------------------------------KTDVILILELVAGG-ELFDFLAEKESLTEEEATEFLKQILNGVY  128 (326)
T ss_dssp             EEEEEC------------------------------SSEEEEEEECCCSC-BHHHHHTTSSCCBHHHHHHHHHHHHHHHH
T ss_pred             EEEEEe------------------------------CCEEEEEEEcCCCC-CHHHHHHhcCCcCHHHHHHHHHHHHHHHH
Confidence            998643                              56799999999988 9999886    899999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPELFSG  360 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pelf~g  360 (447)
                      |||+ .||+||||||+|||++.++.                ....+||+|||+|+......    ......|++||++.+
T Consensus       129 ~lH~-~~ivH~Dlkp~NIll~~~~~----------------~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~  191 (326)
T 2y0a_A          129 YLHS-LQIAHFDLKPENIMLLDRNV----------------PKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNY  191 (326)
T ss_dssp             HHHH-TTEECCCCCGGGEEESCSSS----------------SSCCEEECCCTTCEECCTTSCCCCCCSCTTTCCHHHHTT
T ss_pred             HHHH-CCeEcCCCCHHHEEEecCCC----------------CCCCEEEEECCCCeECCCCCccccccCCcCcCCceeecC
Confidence            9999 99999999999999988751                01269999999998764331    223345899999988


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc-----CHHHHH
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN-----SAKEAI  433 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d-----sa~elL  433 (447)
                      ...+...|+|+ +|.+.++++.|..|+........+.........++.  ....++++++||++||..|     |+.|+|
T Consensus       192 ~~~~~~~Diws-lG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l  270 (326)
T 2y0a_A          192 EPLGLEADMWS-IGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSL  270 (326)
T ss_dssp             CCCCTHHHHHH-HHHHHHHHHHSCCSSCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred             CCCCcHHHHHH-HHHHHHHHHHCcCCCCCCCHHHHHHHHHhcCCCcCccccccCCHHHHHHHHHHccCChhhCCCHHHHh
Confidence            78888889999 999999999999998765444444333322222221  2357899999999999999     999999


Q ss_pred             cCCCCCCCC
Q 013230          434 FDPFFSDLI  442 (447)
Q Consensus       434 ~HPff~~~~  442 (447)
                      +||||+...
T Consensus       271 ~hp~~~~~~  279 (326)
T 2y0a_A          271 QHPWIKPKD  279 (326)
T ss_dssp             HSTTTSCCS
T ss_pred             cCCCccCCc
Confidence            999998653

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=4e-37  Score=320.13  Aligned_cols=244  Identities=18%  Similarity=0.231  Sum_probs=186.4

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|+++++||+|+||.||+|++      ||+|++....      ........+.+|+.+++.++|        ||    ||
T Consensus        63 ~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------pn----Iv  124 (464)
T 3ttj_A           63 RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPF------QNQTHAKRAYRELVLMKCVNH--------KN----II  124 (464)
T ss_dssp             TEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGG------GSHHHHHHHHHHHHHHHHCCC--------TT----BC
T ss_pred             CeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccc------cChHHHHHHHHHHHHHHhCCC--------CC----CC
Confidence            349999999999999999963      9999987432      233445678999999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--CCHHHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--l~~~~~~~i~~Qil~gL~  284 (447)
                      ++++++...+.                        ......+|+||||+.+  +|.+.+.  +++..++.++.||+.||+
T Consensus       125 ~l~~~~~~~~~------------------------~~~~~~~~lv~E~~~~--~l~~~~~~~l~~~~~~~~~~qil~aL~  178 (464)
T 3ttj_A          125 SLLNVFTPQKT------------------------LEEFQDVYLVMELMDA--NLCQVIQMELDHERMSYLLYQMLCGIK  178 (464)
T ss_dssp             CCSEEECSCCS------------------------TTTCCEEEEEEECCSE--EHHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEccCCc------------------------cccCCeEEEEEeCCCC--CHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence            99999643221                        1123568999999984  5666655  999999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDPELFSG  360 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~pelf~g  360 (447)
                      |||+ .||+||||||+|||++.++                    .+||+|||+|+.....    ..+....|++||++.+
T Consensus       179 ~lH~-~~iiHrDlkp~NIll~~~~--------------------~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~  237 (464)
T 3ttj_A          179 HLHS-AGIIHRDLKPSNIVVKSDC--------------------TLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILG  237 (464)
T ss_dssp             HHHH-TTCCCCCCCGGGEEECTTS--------------------CEEECCCCCC-----CCCC----CCCTTCCHHHHTT
T ss_pred             HHHH-CCcccCCCChHhEEEeCCC--------------------CEEEEEEEeeeecCCCcccCCCcccccccCHHHHcC
Confidence            9999 9999999999999999987                    7999999999876543    2234455999999999


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh----------------------ccC-------------
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL----------------------KKT-------------  405 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~----------------------~~~-------------  405 (447)
                      ..++.+.|||+ +|++.++++.|..||........+..++..                      ...             
T Consensus       238 ~~~~~~~DiwS-lG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (464)
T 3ttj_A          238 MGYKENVDIWS-VGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDS  316 (464)
T ss_dssp             CCCCTTHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGG
T ss_pred             CCCCHHHHHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHcchhhhhHhhcccccCCCChHHhCccc
Confidence            88888889999 999999999999888654333322222110                      000             


Q ss_pred             -CCCC----ccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCC
Q 013230          406 -FDRS----SKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       406 -~~~~----~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~  442 (447)
                       ++..    ...+++++|||++||++|     ||+|+|+||||+.+.
T Consensus       317 ~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~~~~~~  363 (464)
T 3ttj_A          317 LFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWY  363 (464)
T ss_dssp             GSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGGGC
T ss_pred             ccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcChhhhhcc
Confidence             0000    012788999999999999     999999999998653

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=2.9e-36  Score=306.57  Aligned_cols=243  Identities=17%  Similarity=0.201  Sum_probs=196.5

Q ss_pred             hhhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCC
Q 013230          126 DLFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTL  199 (447)
Q Consensus       126 ~~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~  199 (447)
                      ...++|   ++++.||+|+||.||+|.+      +|+|++.....        .....+.+|+.+|+.|+|        |
T Consensus        48 ~~~~~y---~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~--------~~~~~~~~E~~il~~l~h--------p  108 (387)
T 1kob_A           48 SVYDYY---DILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYP--------LDKYTVKNEISIMNQLHH--------P  108 (387)
T ss_dssp             CGGGTE---EEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSH--------HHHHHHHHHHHHHTTCCS--------T
T ss_pred             ccccce---EEEEEEecCCCEEEEEEEECCCCCEEEEEEecccch--------hhHHHHHHHHHHHHhCCC--------c
Confidence            344555   9999999999999999973      89998874321        123568899999999988        8


Q ss_pred             CcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHH
Q 013230          200 NACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARS  274 (447)
Q Consensus       200 n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~  274 (447)
                      |    |+++++++..                              .+.+|+||||+.|| +|.+++.     +++..++.
T Consensus       109 n----Iv~~~~~~~~------------------------------~~~~~lv~E~~~gg-~L~~~l~~~~~~l~~~~~~~  153 (387)
T 1kob_A          109 K----LINLHDAFED------------------------------KYEMVLILEFLSGG-ELFDRIAAEDYKMSEAEVIN  153 (387)
T ss_dssp             T----BCCEEEEEEC------------------------------SSEEEEEEECCCCC-BHHHHTTCTTCCBCHHHHHH
T ss_pred             C----CCeEEEEEEe------------------------------CCEEEEEEEcCCCC-cHHHHHHhhcCCCCHHHHHH
Confidence            8    9999999643                              56799999999988 9998875     89999999


Q ss_pred             HHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE----EEe
Q 013230          275 LLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF----FLD  350 (447)
Q Consensus       275 i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i----~~~  350 (447)
                      ++.||+.||+|||+ +||+||||||+|||++.++.                  ..+||+|||+|+........    ...
T Consensus       154 i~~qi~~aL~~LH~-~givHrDlkp~NIll~~~~~------------------~~vkL~DFG~a~~~~~~~~~~~~~gt~  214 (387)
T 1kob_A          154 YMRQACEGLKHMHE-HSIVHLDIKPENIMCETKKA------------------SSVKIIDFGLATKLNPDEIVKVTTATA  214 (387)
T ss_dssp             HHHHHHHHHHHHHH-TTEECCCCCGGGEEESSTTC------------------CCEEECCCTTCEECCTTSCEEEECSSG
T ss_pred             HHHHHHHHHHHHHh-CCeeecccchHHeEEecCCC------------------CceEEEecccceecCCCcceeeeccCC
Confidence            99999999999999 99999999999999986431                  16999999999987655322    223


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCC--CCccchHHHHHHHHHhcccc-
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFD--RSSKDERDLRSLKKRLDKYN-  427 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~--~~~~~s~~l~dLl~~mL~~d-  427 (447)
                      .|++||++.+...+...|||+ +|++.+++++|..|+........+..+......++  ....+++++++||++||..| 
T Consensus       215 ~y~aPE~~~~~~~~~~~DiwS-lG~il~elltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP  293 (387)
T 1kob_A          215 EFAAPEIVDREPVGFYTDMWA-IGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEP  293 (387)
T ss_dssp             GGCCHHHHTTCCBCHHHHHHH-HHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSG
T ss_pred             CccCchhccCCCCCCcccEee-HhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHHcCCCh
Confidence            489999998877777789999 99999999999999976544444444433222222  23468999999999999999 


Q ss_pred             ----CHHHHHcCCCCCCCC
Q 013230          428 ----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 ----sa~elL~HPff~~~~  442 (447)
                          |+.|+|+||||++..
T Consensus       294 ~~Rpt~~ell~hp~~~~~~  312 (387)
T 1kob_A          294 RKRLTVHDALEHPWLKGDH  312 (387)
T ss_dssp             GGSCCHHHHHTSTTTSSCC
T ss_pred             hHCcCHHHHhhCccccCCc
Confidence                999999999998653

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=5.6e-37  Score=307.33  Aligned_cols=241  Identities=19%  Similarity=0.204  Sum_probs=191.7

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|++      ||+|++.....   ........+.+.+|+.+++.++|        ||    |++
T Consensus        26 y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~~~~~E~~~l~~l~h--------pn----Iv~   90 (351)
T 3c0i_A           26 YELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKF---TSSPGLSTEDLKREASICHMLKH--------PH----IVE   90 (351)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHH---HTSSSCCHHHHHHHHHHHHHCCC--------TT----BCC
T ss_pred             eEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhc---cccccchHHHHHHHHHHHHhCCC--------CC----CCc
Confidence            39999999999999999963      99999875321   01112234678999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQV  279 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Qi  279 (447)
                      +++++..                              ++.+|+|||||.|| +|.+++.        +++..++.++.||
T Consensus        91 ~~~~~~~------------------------------~~~~~lv~e~~~g~-~L~~~l~~~~~~~~~~~~~~~~~i~~qi  139 (351)
T 3c0i_A           91 LLETYSS------------------------------DGMLYMVFEFMDGA-DLCFEIVKRADAGFVYSEAVASHYMRQI  139 (351)
T ss_dssp             EEEEEEE------------------------------TTEEEEEEECCSSC-BHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             EEEEEEe------------------------------CCEEEEEEeCCCCC-CHHHHHHHhcccCCCCCHHHHHHHHHHH
Confidence            9999654                              56799999999988 8877653        7999999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----EEEecCCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----FFLDLSQD  354 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i~~~~~~~  354 (447)
                      +.||+|||+ +||+||||||+|||++.++.                 ...+||+|||+|+.....+.     +....|++
T Consensus       140 ~~al~~lH~-~~ivHrDlkp~NIl~~~~~~-----------------~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~y~a  201 (351)
T 3c0i_A          140 LEALRYCHD-NNIIHRDVKPHCVLLASKEN-----------------SAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMA  201 (351)
T ss_dssp             HHHHHHHHH-TTEECSCCSGGGEEECSSST-----------------TCCEEECCCTTCEECCTTSCBCCCCCSCGGGCC
T ss_pred             HHHHHHHHH-CCceeccCChHHeEEecCCC-----------------CCcEEEecCcceeEecCCCeeecCCcCCcCccC
Confidence            999999999 99999999999999987651                 12599999999987655432     23445899


Q ss_pred             CCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc-----
Q 013230          355 PELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN-----  427 (447)
Q Consensus       355 pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d-----  427 (447)
                      ||++.+...+.+.|||+ +|++.++++.+..|+.... ......+......++.  ...+++++++||++||..|     
T Consensus       202 PE~~~~~~~~~~~Diws-lG~il~~ll~g~~pf~~~~-~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~  279 (351)
T 3c0i_A          202 PEVVKREPYGKPVDVWG-CGVILFILLSGCLPFYGTK-ERLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERI  279 (351)
T ss_dssp             HHHHTTCCBCTHHHHHH-HHHHHHHHHHSSCSSCSSH-HHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSC
T ss_pred             HHHHcCCCCCchHhhHH-HHHHHHHHHHCCCCCCCcH-HHHHHHHHcCCCCCCccccccCCHHHHHHHHHHCCCChhHCc
Confidence            99998877778889999 9999999999999987642 2222233322222221  1357899999999999999     


Q ss_pred             CHHHHHcCCCCCC
Q 013230          428 SAKEAIFDPFFSD  440 (447)
Q Consensus       428 sa~elL~HPff~~  440 (447)
                      |+.|+|+||||++
T Consensus       280 s~~e~l~hp~~~~  292 (351)
T 3c0i_A          280 TVYEALNHPWLKE  292 (351)
T ss_dssp             CHHHHHTSHHHHT
T ss_pred             CHHHHhcChhhcC
Confidence            9999999999975

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=3e-37  Score=303.83  Aligned_cols=232  Identities=17%  Similarity=0.152  Sum_probs=169.8

Q ss_pred             CcceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeee
Q 013230          134 PENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMF  209 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~  209 (447)
                      |.+.++||+|+||+||+|+    .||||++....         ........|+.++..|+|        ||    ||+++
T Consensus         5 i~L~~~iG~G~fG~Vy~~~~~g~~VAvK~l~~~~---------~~~~~~e~Ei~~~~~l~H--------pN----Iv~l~   63 (303)
T 3hmm_A            5 IVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSRE---------ERSWFREAEIYQTVMLRH--------EN----ILGFI   63 (303)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTEEEEEEEECGGG---------HHHHHHHHHHHTSTTCCC--------TT----BCCEE
T ss_pred             EEEEEEEeeCCCeEEEEEEECCEEEEEEEECccc---------hhhHHHHHHHHHHhcCCC--------CC----CCcEE
Confidence            4888999999999999997    49999986321         111222345555667777        88    99999


Q ss_pred             eEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHHHH
Q 013230          210 EIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLAVA  286 (447)
Q Consensus       210 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~yl  286 (447)
                      +++...+.                          ....+|||||||+|| +|.+++.   +++..+..++.|++.||+||
T Consensus        64 g~~~~~~~--------------------------~~~~~~lV~Ey~~~g-sL~~~l~~~~l~~~~~~~i~~~ia~gl~yl  116 (303)
T 3hmm_A           64 AADNKDNG--------------------------TWTQLWLVSDYHEHG-SLFDYLNRYTVTVEGMIKLALSTASGLAHL  116 (303)
T ss_dssp             EEEEEECS--------------------------SSEEEEEEEECCTTC-BHHHHHHHCCBCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCC--------------------------CceEEEEEecCCCCC-cHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            99765321                          123589999999999 9999987   89999999999999999999


Q ss_pred             HHhC--------CeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---------CEEEE
Q 013230          287 EAAY--------EFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---------DIFFL  349 (447)
Q Consensus       287 H~~~--------~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---------g~i~~  349 (447)
                      |+ .        +||||||||+||||+.++                    .+||+|||+|+.....         +.+..
T Consensus       117 H~-~~~~~~~~~~IiHRDlKp~NILl~~~~--------------------~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT  175 (303)
T 3hmm_A          117 HM-EIVGTQGKPAIAHRDLKSKNILVKKNG--------------------TCCIADLGLAVRHDSATDTIDIAPNHRVGT  175 (303)
T ss_dssp             HC-CBCSTTCBCCEECSCCCGGGEEECTTS--------------------CEEECCCTTCEEEETTTTEESCC-----CC
T ss_pred             HH-hhhhccCCCCEeeccCCcccEEECCCC--------------------CEEEEeCCCCccccCCCCceeeeccccccc
Confidence            97 5        999999999999999987                    7999999999875433         12345


Q ss_pred             ecCCCCCCCCCCC------CCchHHHHHhhccCCcccccCCCC----------CChhH----HHHHHHHHHhhcc-CCCC
Q 013230          350 DLSQDPELFSGPK------GDKQFDTYRKMKKVTEDQWEGSFP----------KTNVL----WLVYLVDMLLLKK-TFDR  408 (447)
Q Consensus       350 ~~~~~pelf~g~~------~~~~~di~s~lg~~~~~~~~~~~p----------~~~~~----~~~~~~~~l~~~~-~~~~  408 (447)
                      ..|++||++.+..      ++.+.|||+ +|++.++++++..|          +....    ....+...+.... ..+.
T Consensus       176 ~~ymAPE~l~~~~~~~~~~~~~k~DVwS-~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rp~~  254 (303)
T 3hmm_A          176 KRYMAPEVLDDSINMKHFESFKRADIYA-MGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNI  254 (303)
T ss_dssp             GGGCCHHHHTTCSCTTCHHHHHHHHHHH-HHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCC
T ss_pred             ccccCHHHhcccccccCCccChhHhhhh-HHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHhcccCCCCC
Confidence            5699999997753      234569999 99999999887533          32210    1111222222121 1111


Q ss_pred             Cc-----cchHHHHHHHHHhcccc-----CHHHHHcC
Q 013230          409 SS-----KDERDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       409 ~~-----~~s~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      +.     ...+.+.+|+.+||..|     |+.|+++.
T Consensus       255 p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~  291 (303)
T 3hmm_A          255 PNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKT  291 (303)
T ss_dssp             CGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHH
T ss_pred             CccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHH
Confidence            11     24568899999999999     99998753

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=1.2e-36  Score=300.39  Aligned_cols=239  Identities=21%  Similarity=0.295  Sum_probs=177.0

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+++++||+|+||.||+|++      ||+|++....       .....+.+.+|+.+++.++|        ||    |+
T Consensus         6 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------p~----iv   66 (317)
T 2pmi_A            6 QFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDS-------EEGTPSTAIREISLMKELKH--------EN----IV   66 (317)
T ss_dssp             -------------CEEEEEECSSSCCEEEEEEEECCS-------TTCSCHHHHHHHHHHTTCCB--------TT----BC
T ss_pred             ceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeeccc-------ccccHHHHHHHHHHHHhcCC--------CC----cc
Confidence            459999999999999999963      9999987542       22234678899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----------CCHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----------LNINEARSLL  276 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----------l~~~~~~~i~  276 (447)
                      ++++++.                              .++.+|+||||+. | +|.+++.          +++..++.++
T Consensus        67 ~~~~~~~------------------------------~~~~~~lv~e~~~-~-~L~~~l~~~~~~~~~~~~~~~~~~~~~  114 (317)
T 2pmi_A           67 RLYDVIH------------------------------TENKLTLVFEFMD-N-DLKKYMDSRTVGNTPRGLELNLVKYFQ  114 (317)
T ss_dssp             CEEEEEC------------------------------CTTEEEEEEECCC-C-BHHHHHHHHHSSSCCCCCCHHHHHHHH
T ss_pred             eEEEEEE------------------------------ECCeEEEEEEecC-C-CHHHHHHhccccccccCCCHHHHHHHH
Confidence            9999853                              3567999999998 5 8888764          7899999999


Q ss_pred             HHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEec
Q 013230          277 VQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDL  351 (447)
Q Consensus       277 ~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~  351 (447)
                      .||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+|+.....     .......
T Consensus       115 ~qi~~aL~~lH~-~~ivH~Dlkp~NIl~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~t~~  173 (317)
T 2pmi_A          115 WQLLQGLAFCHE-NKILHRDLKPQNLLINKRG--------------------QLKLGDFGLARAFGIPVNTFSSEVVTLW  173 (317)
T ss_dssp             HHHHHHHHHHHH-TTEECCCCCGGGEEECTTC--------------------CEEECCCSSCEETTSCCCCCCCCCSCCT
T ss_pred             HHHHHHHHHHHH-CCeeeCCCChHHeEEcCCC--------------------CEEECcCccceecCCCcccCCCCccccc
Confidence            999999999999 9999999999999999987                    7999999999875432     1223455


Q ss_pred             CCCCCCCCCC-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccC------------------C------
Q 013230          352 SQDPELFSGP-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKT------------------F------  406 (447)
Q Consensus       352 ~~~pelf~g~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~------------------~------  406 (447)
                      |++||++.+. ....+.|||+ +|++.+++++|..||........+..+......                  +      
T Consensus       174 y~aPE~~~~~~~~~~~~Diws-lG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (317)
T 2pmi_A          174 YRAPDVLMGSRTYSTSIDIWS-CGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPR  252 (317)
T ss_dssp             TCCHHHHTTCCCCCTHHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCCCCC
T ss_pred             ccCchHhhCCCCCCcHHHHHH-HHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhhhhhhhhhcccccccccch
Confidence            8999998764 4566779999 999999999999888654333222222110000                  0      


Q ss_pred             --------CCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          407 --------DRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       407 --------~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                              ......+.++++||++||+.|     ||+|+|+||||++...+
T Consensus       253 ~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~  303 (317)
T 2pmi_A          253 DLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHHPWFAEYYHH  303 (317)
T ss_dssp             CSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGCC-
T ss_pred             hHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhCChhhhcccch
Confidence                    011246889999999999999     99999999999987543

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=7.9e-37  Score=309.84  Aligned_cols=244  Identities=16%  Similarity=0.156  Sum_probs=188.7

Q ss_pred             hhhhccCCCcceEEeccc--cceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCC
Q 013230          126 DLFSKYSDPENIVKVGEG--TFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGD  197 (447)
Q Consensus       126 ~~~~~y~~~~~~~~LG~G--~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~  197 (447)
                      ...++|   +++++||+|  +||.||+|++      ||+|++.....      .....+.+.+|+.+++.++|       
T Consensus        22 ~~~~~y---~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~------~~~~~~~~~~E~~~l~~l~h-------   85 (389)
T 3gni_B           22 PEGGCY---ELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEAC------SNEMVTFLQGELHVSKLFNH-------   85 (389)
T ss_dssp             CCGGGE---EEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGS------CHHHHHHHHHHHHHHHHCCC-------
T ss_pred             CCCCcE---EEEecccCCcCCceEEEEEEEcCCCCEEEEEEeccccc------ChHHHHHHHHHHHHHHhCCC-------
Confidence            334555   999999999  9999999984      99999975432      23345678889999999998       


Q ss_pred             CCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHH
Q 013230          198 TLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINE  271 (447)
Q Consensus       198 ~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~  271 (447)
                       ||    ||++++++..                              ++.+|+|||||.+| +|.+++.      +++..
T Consensus        86 -~n----iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~  129 (389)
T 3gni_B           86 -PN----IVPYRATFIA------------------------------DNELWVVTSFMAYG-SAKDLICTHFMDGMNELA  129 (389)
T ss_dssp             -TT----BCCEEEEEEE------------------------------TTEEEEEEECCTTC-BHHHHHHHTCTTCCCHHH
T ss_pred             -CC----CCcEeEEEEE------------------------------CCEEEEEEEccCCC-CHHHHHhhhcccCCCHHH
Confidence             88    9999999754                              56799999999988 9998874      89999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----
Q 013230          272 ARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----  346 (447)
Q Consensus       272 ~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----  346 (447)
                      ++.++.||+.||+|||+ +||+||||||+|||++.++                    .+||+|||++......+.     
T Consensus       130 ~~~~~~qi~~~l~~LH~-~~ivHrDlkp~NIll~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~  188 (389)
T 3gni_B          130 IAYILQGVLKALDYIHH-MGYVHRSVKASHILISVDG--------------------KVYLSGLRSNLSMISHGQRQRVV  188 (389)
T ss_dssp             HHHHHHHHHHHHHHHHH-TTEECCCCSGGGEEECTTC--------------------CEEECCGGGCEECEETTEECSCB
T ss_pred             HHHHHHHHHHHHHHHHh-CCeecCCCCHHHEEEcCCC--------------------CEEEcccccceeecccccccccc
Confidence            99999999999999999 9999999999999999887                    799999999876533321     


Q ss_pred             -------EEEecCCCCCCCCC--CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc--------------
Q 013230          347 -------FFLDLSQDPELFSG--PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK--------------  403 (447)
Q Consensus       347 -------i~~~~~~~pelf~g--~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~--------------  403 (447)
                             +....|++||++.+  ...+.+.|||+ +|++.++++.|..||............+...              
T Consensus       189 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~Diws-lG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (389)
T 3gni_B          189 HDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYS-VGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTSTIPAEE  267 (389)
T ss_dssp             CCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHH-HHHHHHHHHHSSCTTTTCCSTTHHHHC------------------
T ss_pred             ccccccccccccccCHHHHhccCCCCCcHhHHHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCcccccccccccc
Confidence                   11223789999987  45666779999 9999999999998886431111111111000              


Q ss_pred             ------------------------------cCCCCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          404 ------------------------------KTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       404 ------------------------------~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                                                    ...+.+..+++++++||++||++|     ||+|+|+||||+++..
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~hp~f~~~~~  342 (389)
T 3gni_B          268 LTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQIKR  342 (389)
T ss_dssp             --------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTSGGGGGC--
T ss_pred             ccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcCHHHHHHhh
Confidence                                          011123457899999999999999     9999999999997643

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=1.3e-36  Score=295.30  Aligned_cols=237  Identities=22%  Similarity=0.315  Sum_probs=186.5

Q ss_pred             CCcceEEeccccceEEEEece-----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN-----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~-----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      +|++++.||+|+||.||+|++     ||+|++....      ........+.+|+.+++.++|        ||    |++
T Consensus         3 ~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------~~----iv~   64 (288)
T 1ob3_A            3 KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEK------EDEGIPSTTIREISILKELKH--------SN----IVK   64 (288)
T ss_dssp             SEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSS------GGGCCCHHHHHHHHGGGGCCC--------TT----BCC
T ss_pred             cchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccc------cccccchhHHHHHHHHHhcCC--------CC----Eee
Confidence            459999999999999999973     9999987543      223344678899999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++..                              ++.+|+||||+. | +|.+++.     +++..++.++.||+.|
T Consensus        65 ~~~~~~~------------------------------~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~  112 (288)
T 1ob3_A           65 LYDVIHT------------------------------KKRLVLVFEHLD-Q-DLKKLLDVCEGGLESVTAKSFLLQLLNG  112 (288)
T ss_dssp             EEEEEEC------------------------------SSCEEEEEECCS-E-EHHHHHHTSTTCCCHHHHHHHHHHHHHH
T ss_pred             eeeEEcc------------------------------CCeEEEEEEecC-C-CHHHHHHhcccCCCHHHHHHHHHHHHHH
Confidence            9999643                              567999999998 5 8888765     8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pel  357 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+|+.....     .......|++||+
T Consensus       113 l~~lH~-~~i~H~dlkp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~  171 (288)
T 1ob3_A          113 IAYCHD-RRVLHRDLKPQNLLINREG--------------------ELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDV  171 (288)
T ss_dssp             HHHHHH-TTCCCSCCCGGGEEECTTS--------------------CEEECCTTHHHHHCC---------CCCTTCCHHH
T ss_pred             HHHHHH-CCeecCCCCHHHEEEcCCC--------------------CEEEeECccccccCccccccccccccccccCchh
Confidence            999999 9999999999999999887                    7999999999865432     1223455899999


Q ss_pred             CCCCC-CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh--c---cC-------------CC---------CC
Q 013230          358 FSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL--K---KT-------------FD---------RS  409 (447)
Q Consensus       358 f~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~--~---~~-------------~~---------~~  409 (447)
                      +.+.. .+.+.|||+ +|.+.+++++|..|+........+..+...  .   ..             ++         ..
T Consensus       172 ~~~~~~~~~~~Diws-lG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (288)
T 1ob3_A          172 LMGSKKYSTTIDIWS-VGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFL  250 (288)
T ss_dssp             HTTCCSCCTHHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTC
T ss_pred             eeCCCCCCcHHHHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhcccccccccccccCccHHHHh
Confidence            87643 566779999 999999999999888654332222222110  0   00             00         01


Q ss_pred             ccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCC
Q 013230          410 SKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       410 ~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~  441 (447)
                      ..+++++++||++||+.|     |++|+|+||||++.
T Consensus       251 ~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~  287 (288)
T 1ob3_A          251 KGLDESGIDLLSKMLKLDPNQRITAKQALEHAYFKEN  287 (288)
T ss_dssp             CSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGGC-
T ss_pred             hhcCHHHHHHHHHHcCCCcccCCCHHHHhcCcchhhc
Confidence            347899999999999999     99999999999864

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.4e-38  Score=312.92  Aligned_cols=236  Identities=20%  Similarity=0.245  Sum_probs=188.8

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|++.+.||+|+||.||+|++      ||+|++.....     ........+.+|+.+++.++|        ||    |+
T Consensus        10 ~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~-----~~~~~~~~~~~E~~~l~~l~h--------pn----Iv   72 (336)
T 3h4j_B           10 PYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLL-----KKSDMHMRVEREISYLKLLRH--------PH----II   72 (336)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHH-----HHTTCSHHHHHHHHHHTTCCC--------TT----BC
T ss_pred             CEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHc-----cchhHHHHHHHHHHHHHhCCC--------CC----CC
Confidence            459999999999999999984      99999874321     122234678999999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              .+.+|+||||+ +| +|.+++.    +++..++.++.||+.|
T Consensus        73 ~l~~~~~~------------------------------~~~~~lv~E~~-~g-~l~~~l~~~~~l~~~~~~~i~~qi~~a  120 (336)
T 3h4j_B           73 KLYDVITT------------------------------PTDIVMVIEYA-GG-ELFDYIVEKKRMTEDEGRRFFQQIICA  120 (336)
T ss_dssp             CEEEEEEC------------------------------SSEEEEEECCC-CE-EHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             eEEEEEEe------------------------------CCEEEEEEECC-CC-cHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            99999543                              56799999999 57 7877765    9999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPELF  358 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pelf  358 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+|+......    ......|++||++
T Consensus       121 L~~LH~-~givH~Dlkp~NIll~~~~--------------------~~kl~DFG~s~~~~~~~~~~~~~gt~~y~aPE~~  179 (336)
T 3h4j_B          121 IEYCHR-HKIVHRDLKPENLLLDDNL--------------------NVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVI  179 (336)
T ss_dssp             HHHHHH-HTCCCCCCSTTTEEECTTC--------------------CEEECCSSCTBTTTTSBTTCCCTTSTTTSCGGGS
T ss_pred             HHHHHH-CCeEecCCchhhEEEcCCC--------------------CEEEEEeccceeccCCcccccccCCcCcCCHHHH
Confidence            999999 9999999999999999887                    79999999998765431    1223458999999


Q ss_pred             CCCCC-CchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHH
Q 013230          359 SGPKG-DKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEA  432 (447)
Q Consensus       359 ~g~~~-~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~el  432 (447)
                      .+... ..+.|||+ +|.+.++++.|..||...........+.  ...+..+..+++++++||++||..|     |++|+
T Consensus       180 ~~~~~~~~~~Diws-lG~il~~ll~g~~Pf~~~~~~~~~~~i~--~~~~~~p~~~s~~~~~li~~~L~~dP~~Rpt~~ei  256 (336)
T 3h4j_B          180 NGKLYAGPEVDVWS-CGIVLYVMLVGRLPFDDEFIPNLFKKVN--SCVYVMPDFLSPGAQSLIRRMIVADPMQRITIQEI  256 (336)
T ss_dssp             CCSGGGCHHHHHHH-HHHHHHHHHHSSCSSBCSSSTTCBCCCC--SSCCCCCTTSCHHHHHHHHTTSCSSGGGSCCHHHH
T ss_pred             cCCCCCCCccchhH-HHHHHHHHHhCCCCCCCccHHHHHHHHH--cCCCCCcccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence            88665 35669999 9999999999999986532211111111  1223345668999999999999999     99999


Q ss_pred             HcCCCCCCC
Q 013230          433 IFDPFFSDL  441 (447)
Q Consensus       433 L~HPff~~~  441 (447)
                      ++||||+..
T Consensus       257 l~hp~~~~~  265 (336)
T 3h4j_B          257 RRDPWFNVN  265 (336)
T ss_dssp             TTCHHHHTT
T ss_pred             HhChhhccC
Confidence            999999753

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=8.2e-37  Score=331.46  Aligned_cols=240  Identities=16%  Similarity=0.167  Sum_probs=198.4

Q ss_pred             CCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccce
Q 013230          132 SDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~i  205 (447)
                      .+|++++.||+|+||.||+|++      ||+|++.....     ......+.+..|..++..+.+  |     +|    |
T Consensus       341 ~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~-----~~~~~~~~~~~E~~~l~~~~~--~-----~~----i  404 (674)
T 3pfq_A          341 TDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVV-----IQDDDVECTMVEKRVLALPGK--P-----PF----L  404 (674)
T ss_dssp             TTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHH-----HHTTTTHHHHHHHHHHTCTTC--C-----TT----B
T ss_pred             cceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEecccc-----ccHHHHHHHHHHHHHHHhccC--C-----Ce----E
Confidence            4579999999999999999983      99999875421     122344678899999988754  1     55    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTA  281 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~  281 (447)
                      +.++++|                              .+.+.+||||||+.|| +|..++.    +++..++.++.||+.
T Consensus       405 ~~l~~~~------------------------------~~~~~~~lV~E~~~gg-~L~~~l~~~~~~~~~~~~~~~~qi~~  453 (674)
T 3pfq_A          405 TQLHSCF------------------------------QTMDRLYFVMEYVNGG-DLMYHIQQVGRFKEPHAVFYAAEIAI  453 (674)
T ss_dssp             CCEEEEC------------------------------BCSSEEEEEEECCCSC-BHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             EEEEEEE------------------------------EeCCEEEEEEeCcCCC-cHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            9999883                              3467799999999988 9998886    999999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pe  356 (447)
                      ||+|||+ .|||||||||+||||+.++                    .+||+|||+|+.....+     ......|++||
T Consensus       454 aL~~LH~-~gIiHrDLKp~NILl~~~g--------------------~ikL~DFGla~~~~~~~~~~~~~~GT~~Y~APE  512 (674)
T 3pfq_A          454 GLFFLQS-KGIIYRDLKLDNVMLDSEG--------------------HIKIADFGMCKENIWDGVTTKTFCGTPDYIAPE  512 (674)
T ss_dssp             HHHHHHH-TSEECCCCCSTTEEECSSS--------------------CEEECCCTTCEECCCTTCCBCCCCSCSSSCCHH
T ss_pred             HHHHHHh-CCeEeccCChhhEEEcCCC--------------------cEEEeecceeeccccCCcccccccCCCcccCHh
Confidence            9999999 9999999999999999987                    79999999998743332     12334589999


Q ss_pred             CCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CH--
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SA--  429 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa--  429 (447)
                      ++.+..++...|+|+ +|.+.++++.|..||...........++..  .+..+..+++++++||++||++|     ++  
T Consensus       513 ~l~~~~~~~~~DvwS-lGvilyelltG~~Pf~~~~~~~~~~~i~~~--~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~  589 (674)
T 3pfq_A          513 IIAYQPYGKSVDWWA-FGVLLYEMLAGQAPFEGEDEDELFQSIMEH--NVAYPKSMSKEAVAICKGLMTKHPGKRLGCGP  589 (674)
T ss_dssp             HHTCCCBSTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHSS--CCCCCTTSCHHHHHHHHHHSCSSSTTCTTCST
T ss_pred             hhcCCCCCccceEec-hHHHHHHHHcCCCCCCCCCHHHHHHHHHhC--CCCCCccCCHHHHHHHHHHccCCHHHCCCCCC
Confidence            999888888889999 999999999999999876555555555533  34445679999999999999999     54  


Q ss_pred             ---HHHHcCCCCCCCC
Q 013230          430 ---KEAIFDPFFSDLI  442 (447)
Q Consensus       430 ---~elL~HPff~~~~  442 (447)
                         +|+++||||+++.
T Consensus       590 ~~~~ei~~h~ff~~i~  605 (674)
T 3pfq_A          590 EGERDIKEHAFFRYID  605 (674)
T ss_dssp             THHHHHHSSGGGSSCC
T ss_pred             CcHHHHhcCccccCCC
Confidence               9999999999875

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=1.4e-36  Score=301.40  Aligned_cols=248  Identities=21%  Similarity=0.279  Sum_probs=185.7

Q ss_pred             hhhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCC
Q 013230          126 DLFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTL  199 (447)
Q Consensus       126 ~~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~  199 (447)
                      ..+++|   +++++||+|+||.||+|++      ||+|++....      ........+.+|+.+++.++|        |
T Consensus        31 ~~~~~y---~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------~   93 (329)
T 3gbz_A           31 TSIDRY---RRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEH------EEEGVPGTAIREVSLLKELQH--------R   93 (329)
T ss_dssp             -CGGGE---EEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------------CHHHHHHGGGCCC--------T
T ss_pred             cchhhE---EEEEEEEecCCeEEEEEEECCCCceEEEEEEcccc------cccccchhHHHHHHHHHHcCC--------C
Confidence            345566   9999999999999999963      9999987543      222334567899999999988        8


Q ss_pred             CcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHH
Q 013230          200 NACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSL  275 (447)
Q Consensus       200 n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i  275 (447)
                      |    |+++++++..                              ++.+|+||||+. | +|.+++.    +++..++.+
T Consensus        94 ~----iv~~~~~~~~------------------------------~~~~~lv~e~~~-~-~L~~~~~~~~~~~~~~~~~i  137 (329)
T 3gbz_A           94 N----IIELKSVIHH------------------------------NHRLHLIFEYAE-N-DLKKYMDKNPDVSMRVIKSF  137 (329)
T ss_dssp             T----BCCEEEEEEE------------------------------TTEEEEEEECCS-E-EHHHHHHHCTTCCHHHHHHH
T ss_pred             C----cceEEEEEec------------------------------CCEEEEEEecCC-C-CHHHHHhhcCCCCHHHHHHH
Confidence            8    9999999654                              567999999998 6 8988876    899999999


Q ss_pred             HHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEe
Q 013230          276 LVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLD  350 (447)
Q Consensus       276 ~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~  350 (447)
                      +.||+.||+|||+ .||+||||||+|||++.++.               .....+||+|||+|+.....     ..+...
T Consensus       138 ~~ql~~~l~~LH~-~~ivH~Dlkp~NIll~~~~~---------------~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~  201 (329)
T 3gbz_A          138 LYQLINGVNFCHS-RRCLHRDLKPQNLLLSVSDA---------------SETPVLKIGDFGLARAFGIPIRQFTHEIITL  201 (329)
T ss_dssp             HHHHHHHHHHHHH-TTCCCSCCCGGGEEEEC--------------------CCEEEECCTTHHHHHC-----------CC
T ss_pred             HHHHHHHHHHHHh-CCEECCCCCHHHEEEecCCC---------------CccceEEECcCCCccccCCcccccCCCcCCc
Confidence            9999999999999 99999999999999975431               00116999999999865432     223345


Q ss_pred             cCCCCCCCCCCC-CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccC-----CC-------------C---
Q 013230          351 LSQDPELFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKT-----FD-------------R---  408 (447)
Q Consensus       351 ~~~~pelf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~-----~~-------------~---  408 (447)
                      .|++||++.+.. ...+.|||+ +|++.++++.+..|+........+..+......     ++             .   
T Consensus       202 ~y~aPE~~~~~~~~~~~~Diws-lG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (329)
T 3gbz_A          202 WYRPPEILLGSRHYSTSVDIWS-IACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRG  280 (329)
T ss_dssp             TTCCHHHHTTCCCCCTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCC
T ss_pred             cccCHHHhcCCCCCCcHHHHHH-HHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhhcc
Confidence            589999998744 566779999 999999999999888655433333333211000     00             0   


Q ss_pred             -------CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          409 -------SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       409 -------~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                             ...+++++++||++||++|     ||+|+|+||||++...
T Consensus       281 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~  327 (329)
T 3gbz_A          281 KTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALEHPYFSHNDF  327 (329)
T ss_dssp             CCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSSCS
T ss_pred             ccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhCCcccCCCCC
Confidence                   0126799999999999999     9999999999998754

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=6.5e-36  Score=296.28  Aligned_cols=248  Identities=16%  Similarity=0.154  Sum_probs=195.9

Q ss_pred             hhhhhhccCCCcce-EEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCC
Q 013230          124 LLDLFSKYSDPENI-VKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEG  196 (447)
Q Consensus       124 ~~~~~~~y~~~~~~-~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~  196 (447)
                      ...+.++|   .+. +.||+|+||.||+|+      .||+|++....      ........+.+|+.+++.+.+  |   
T Consensus        23 ~~~~~~~y---~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~~~~~~e~~~l~~l~~--~---   88 (327)
T 3lm5_A           23 MENFNNFY---ILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRR------RGQDCRAEILHEIAVLELAKS--C---   88 (327)
T ss_dssp             HHHHHHHE---EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEE------TTEECHHHHHHHHHHHHHTTT--C---
T ss_pred             HHhhhhEE---eeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhh------cchHHHHHHHHHHHHHHhccC--C---
Confidence            34445555   666 889999999999996      39999987542      223345678999999999865  1   


Q ss_pred             CCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHH
Q 013230          197 DTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNIN  270 (447)
Q Consensus       197 ~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~  270 (447)
                        ||    |+++++++..                              .+.+|+||||+.+| +|.+++.      +++.
T Consensus        89 --~~----iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~  131 (327)
T 3lm5_A           89 --PR----VINLHEVYEN------------------------------TSEIILILEYAAGG-EIFSLCLPELAEMVSEN  131 (327)
T ss_dssp             --TT----BCCEEEEEEC------------------------------SSEEEEEEECCTTE-EGGGGGSSCC-CCCCHH
T ss_pred             --CC----EEEEEEEEEe------------------------------CCeEEEEEEecCCC-cHHHHHHHhcccCCCHH
Confidence              45    9999999643                              56699999999988 9998874      8999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEec---CCCccccccccCcccccccCCCcEEEeeccceeecCCCC--
Q 013230          271 EARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSR---NDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED--  345 (447)
Q Consensus       271 ~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~---~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g--  345 (447)
                      .++.++.||+.||+|||+ .||+||||||+|||++.   ++                    .+||+|||+|+......  
T Consensus       132 ~~~~i~~ql~~~L~~LH~-~givH~Dikp~NIl~~~~~~~~--------------------~~kL~Dfg~a~~~~~~~~~  190 (327)
T 3lm5_A          132 DVIRLIKQILEGVYYLHQ-NNIVHLDLKPQNILLSSIYPLG--------------------DIKIVDFGMSRKIGHACEL  190 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TTEECSCCCGGGEEESCBTTBC--------------------CEEECCGGGCEEC------
T ss_pred             HHHHHHHHHHHHHHHHHH-CCeecCcCChHHEEEecCCCCC--------------------cEEEeeCccccccCCcccc
Confidence            999999999999999999 99999999999999988   33                    79999999998765432  


Q ss_pred             --EEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCC--CCccchHHHHHHHH
Q 013230          346 --IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFD--RSSKDERDLRSLKK  421 (447)
Q Consensus       346 --~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~--~~~~~s~~l~dLl~  421 (447)
                        ......|++||++.+.....+.|+|+ +|.+.++++.+..|+...........+......++  ....+++++++||+
T Consensus       191 ~~~~gt~~y~aPE~~~~~~~~~~~Diws-lG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~  269 (327)
T 3lm5_A          191 REIMGTPEYLAPEILNYDPITTATDMWN-IGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYSEETFSSVSQLATDFIQ  269 (327)
T ss_dssp             ---CCCGGGCCHHHHTTCCCCTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHH
T ss_pred             ccccCCcCccCCeeecCCCCCchhhHHH-HHHHHHHHHhCCCCCCCCCchHHHHHHHhcccccCchhhcccCHHHHHHHH
Confidence              12334589999998888888889999 99999999999999866544443333332222222  23568999999999


Q ss_pred             Hhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          422 RLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       422 ~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                      +||+.|     |++|+|+||||+++..+
T Consensus       270 ~~L~~dP~~Rpt~~~ll~h~~~~~~~~~  297 (327)
T 3lm5_A          270 SLLVKNPEKRPTAEICLSHSWLQQWDFE  297 (327)
T ss_dssp             HHSCSSGGGSCCHHHHTTCGGGCCCCTT
T ss_pred             HHcCCChhhCcCHHHHhCCHhhcccccc
Confidence            999999     99999999999987554

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.8e-36  Score=305.68  Aligned_cols=245  Identities=19%  Similarity=0.243  Sum_probs=185.0

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|++      ||+|++....      ......+.+.+|+.+++.++|        ||    |++
T Consensus        27 y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------pn----Iv~   88 (367)
T 1cm8_A           27 YRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPF------QSELFAKRAYRELRLLKHMRH--------EN----VIG   88 (367)
T ss_dssp             EEEEEEC------CEEEEEETTTCCEEEEEECSSTT------SSHHHHHHHHHHHHHHHHCCB--------TT----BCC
T ss_pred             EEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccc------cCHHHHHHHHHHHHHHHhCCC--------cC----CCC
Confidence            49999999999999999973      9999886432      223345678999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~  284 (447)
                      +++++...+.                        ......+|+||||+ +| +|.+++.   +++..++.++.||+.||+
T Consensus        89 l~~~~~~~~~------------------------~~~~~~~~lv~e~~-~~-~L~~~~~~~~l~~~~~~~~~~qi~~~L~  142 (367)
T 1cm8_A           89 LLDVFTPDET------------------------LDDFTDFYLVMPFM-GT-DLGKLMKHEKLGEDRIQFLVYQMLKGLR  142 (367)
T ss_dssp             CSEEECSCSS------------------------TTTCCCCEEEEECC-SE-EHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             ceeeEecCCc------------------------cccCceEEEEEecC-CC-CHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            9999643211                        11124579999999 55 9999987   999999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--CEEEEecCCCCCCCCC-C
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--DIFFLDLSQDPELFSG-P  361 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--g~i~~~~~~~pelf~g-~  361 (447)
                      |||+ .||+||||||+|||++.++                    .+||+|||+|+.....  +.+....|++||++.+ .
T Consensus       143 ~LH~-~~ivH~Dlkp~NIll~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~  201 (367)
T 1cm8_A          143 YIHA-AGIIHRDLKPGNLAVNEDC--------------------ELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWM  201 (367)
T ss_dssp             HHHH-TTEECCCCCGGGEEECTTC--------------------CEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTT
T ss_pred             HHHH-CCccccCcCHHHEEEcCCC--------------------CEEEEeeecccccccccCcCcCCCCcCCHHHHhCCC
Confidence            9999 9999999999999999987                    7999999999876443  2233455899998876 4


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc-----------------------c-----CCC-CCccc
Q 013230          362 KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK-----------------------K-----TFD-RSSKD  412 (447)
Q Consensus       362 ~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~-----------------------~-----~~~-~~~~~  412 (447)
                      ....+.|+|+ +|++.++++.|..||........+..++...                       .     .+. .....
T Consensus       202 ~~~~~~Diws-lG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (367)
T 1cm8_A          202 RYTQTVDIWS-VGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNA  280 (367)
T ss_dssp             CCCTTHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTC
T ss_pred             CCChhhhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCCCCCCCHHHHCCCC
Confidence            5667779999 9999999999998886543333222221100                       0     000 12346


Q ss_pred             hHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          413 ERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       413 s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                      +++++|||++||++|     ||+|+|+||||+++..+
T Consensus       281 ~~~~~~ll~~mL~~dP~~R~t~~e~l~hp~f~~~~~~  317 (367)
T 1cm8_A          281 SPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHDT  317 (367)
T ss_dssp             CHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC--
T ss_pred             CHHHHHHHHHHccCChhHCCCHHHHhcChHHHhhcCC
Confidence            899999999999999     99999999999987543

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=5.2e-36  Score=293.72  Aligned_cols=248  Identities=20%  Similarity=0.231  Sum_probs=188.8

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+++++||+|+||.||+|++      ||+|++.....   ............+|+.+++.++.+.|     ||    |++
T Consensus        11 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~~~~~e~~~l~~l~~~~h-----~n----iv~   78 (308)
T 3g33_A           11 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNG---GGGGGGLPISTVREVALLRRLEAFEH-----PN----VVR   78 (308)
T ss_dssp             CEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECC---CTTSSCCCHHHHHHHHHHHHHHHHCC-----TT----BCC
T ss_pred             eEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccc---cccccccchhHHHHHHHHHHHhhcCC-----CC----eEE
Confidence            49999999999999999983      99999875432   11222234567899999998874333     77    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +++++.....                         .....+|+||||+. | +|.+++.      +++..++.++.||+.
T Consensus        79 ~~~~~~~~~~-------------------------~~~~~~~lv~e~~~-~-~L~~~~~~~~~~~~~~~~~~~i~~qi~~  131 (308)
T 3g33_A           79 LMDVCATSRT-------------------------DREIKVTLVFEHVD-Q-DLRTYLDKAPPPGLPAETIKDLMRQFLR  131 (308)
T ss_dssp             EEEEEEECCS-------------------------SSEEEEEEEEECCC-C-BHHHHHHTCCTTCSCHHHHHHHHHHHHH
T ss_pred             eeeeeeccCC-------------------------CCceeEEEEehhhh-c-CHHHHHhhccCCCCCHHHHHHHHHHHHH
Confidence            9999765221                         01125899999997 6 8988875      899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPEL  357 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pel  357 (447)
                      ||+|||+ .||+||||||+|||++.++                    .+||+|||+|+......    ......|++||+
T Consensus       132 al~~lH~-~~ivH~Dlkp~Nil~~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~  190 (308)
T 3g33_A          132 GLDFLHA-NCIVHRDLKPENILVTSGG--------------------TVKLADFGLARIYSYQMALTPVVVTLWYRAPEV  190 (308)
T ss_dssp             HHHHHHH-TTCCCSCCCTTTEEECTTS--------------------CEEECSCSCTTTSTTCCCSGGGGCCCSSCCHHH
T ss_pred             HHHHHHH-CCcccCCCCHHHEEEcCCC--------------------CEEEeeCccccccCCCcccCCccccccccCchH
Confidence            9999999 9999999999999999887                    79999999998654331    223455899999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhcc-----CCCC--------------------Cccc
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKK-----TFDR--------------------SSKD  412 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~-----~~~~--------------------~~~~  412 (447)
                      +.+...+.+.|||+ +|.+.++++.+..|+........+..+...-.     .++.                    ...+
T Consensus       191 ~~~~~~~~~~Diws-lG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (308)
T 3g33_A          191 LLQSTYATPVDMWS-VGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEM  269 (308)
T ss_dssp             HHTSCCCSTHHHHH-HHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSC
T ss_pred             HcCCCCCchHHHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCccc
Confidence            98878888889999 99999999999999865543333333321100     0000                    1247


Q ss_pred             hHHHHHHHHHhcccc-----CHHHHHcCCCCCCCC
Q 013230          413 ERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       413 s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~  442 (447)
                      ++++++||.+||++|     ||.|+|+||||++..
T Consensus       270 ~~~~~~li~~~L~~dP~~R~t~~e~l~h~~~~~~~  304 (308)
T 3g33_A          270 EESGAQLLLEMLTFNPHKRISAFRALQHSYLHKDE  304 (308)
T ss_dssp             CHHHHHHHHHHTCSSTTTSCCHHHHHTSTTC----
T ss_pred             cHHHHHHHHHHhcCCCccCCCHHHHhcCccccCCC
Confidence            899999999999999     999999999999753

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=4.3e-36  Score=291.49  Aligned_cols=244  Identities=21%  Similarity=0.257  Sum_probs=190.8

Q ss_pred             hhhhhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCC
Q 013230          124 LLDLFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGD  197 (447)
Q Consensus       124 ~~~~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~  197 (447)
                      -..+.++|   ++.++||+|+||.||+|++      +|+|++....       .....+.+.+|+.+++.++|       
T Consensus        17 ~g~i~~~y---~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~-------~~~~~~~~~~E~~~l~~l~h-------   79 (285)
T 3is5_A           17 QGTIDDLF---IFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDR-------SQVPMEQIEAEIEVLKSLDH-------   79 (285)
T ss_dssp             SSCHHHHE---EEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGG-------CCSCHHHHHHHHHHHHTCCC-------
T ss_pred             CCChhhhe---eecceeccCCCeEEEEEEEccCCceEEEEEeeccc-------cchhHHHHHHHHHHHHhCCC-------
Confidence            33455666   9999999999999999973      8999887542       22345778999999999988       


Q ss_pred             CCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCH
Q 013230          198 TLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNI  269 (447)
Q Consensus       198 ~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~  269 (447)
                       ||    |+++++++..                              .+.+|+||||+.+| +|.+++.        +++
T Consensus        80 -p~----iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~  123 (285)
T 3is5_A           80 -PN----IIKIFEVFED------------------------------YHNMYIVMETCEGG-ELLERIVSAQARGKALSE  123 (285)
T ss_dssp             -TT----BCCEEEEEEC------------------------------SSEEEEEECCCSCC-BHHHHHHHHHHHTCCCCH
T ss_pred             -ch----HHhHHHheec------------------------------CCeEEEEEEeCCCC-cHHHHHHhhhhcccCCCH
Confidence             88    9999999543                              56799999999988 8888763        899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE---
Q 013230          270 NEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI---  346 (447)
Q Consensus       270 ~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~---  346 (447)
                      ..++.++.||+.||+|||+ .||+||||||+|||++.+..                 ...+||+|||+|+.......   
T Consensus       124 ~~~~~i~~qi~~~L~~LH~-~~ivH~dikp~NIl~~~~~~-----------------~~~~kl~Dfg~a~~~~~~~~~~~  185 (285)
T 3is5_A          124 GYVAELMKQMMNALAYFHS-QHVVHKDLKPENILFQDTSP-----------------HSPIKIIDFGLAELFKSDEHSTN  185 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TTCCCCCCSGGGEEESSSST-----------------TCCEEECCCCCCCC---------
T ss_pred             HHHHHHHHHHHHHHHHHHh-CCEEECCCCHHHEEEecCCC-----------------CCCEEEEeeecceecCCcccCcC
Confidence            9999999999999999999 99999999999999965421                 01699999999986544321   


Q ss_pred             -EEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC-CccchHHHHHHHHHhc
Q 013230          347 -FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR-SSKDERDLRSLKKRLD  424 (447)
Q Consensus       347 -i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~-~~~~s~~l~dLl~~mL  424 (447)
                       .....|++||++.+ ....+.|+|+ +|.+.++++.+..|+..................+.. ....++++++||++||
T Consensus       186 ~~~t~~y~aPE~~~~-~~~~~~Di~s-lG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L  263 (285)
T 3is5_A          186 AAGTALYMAPEVFKR-DVTFKCDIWS-AGVVMYFLLTGCLPFTGTSLEEVQQKATYKEPNYAVECRPLTPQAVDLLKQML  263 (285)
T ss_dssp             -CTTGGGCCHHHHTT-CCCHHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCC--CCCCHHHHHHHHHHT
T ss_pred             cccccCcCChHHhcc-CCCcccCeeh-HHHHHHHHHhCCCCCCCCCHHHHHhhhccCCcccccccCcCCHHHHHHHHHHc
Confidence             12234889999876 4566779999 999999999999998765544444433332333322 2347899999999999


Q ss_pred             ccc-----CHHHHHcCCCCCC
Q 013230          425 KYN-----SAKEAIFDPFFSD  440 (447)
Q Consensus       425 ~~d-----sa~elL~HPff~~  440 (447)
                      ..|     |+.|+|+||||++
T Consensus       264 ~~dP~~Rps~~e~l~hp~f~~  284 (285)
T 3is5_A          264 TKDPERRPSAAQVLHHEWFKQ  284 (285)
T ss_dssp             CSCTTTSCCHHHHHTSGGGGC
T ss_pred             cCChhhCcCHHHHhcCHHhhc
Confidence            999     9999999999985

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=2.2e-36  Score=315.93  Aligned_cols=250  Identities=23%  Similarity=0.314  Sum_probs=200.2

Q ss_pred             chhhhhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCC
Q 013230          123 KLLDLFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEG  196 (447)
Q Consensus       123 ~~~~~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~  196 (447)
                      .-..+.++|   +++++||+|+||.||+|++      ||+|++....      ........+.+|+.+++.++|      
T Consensus        16 ~~g~~~~~y---~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~~~~~~E~~~l~~l~h------   80 (486)
T 3mwu_A           16 FQGTFAERY---NIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKAS------AKNKDTSTILREVELLKKLDH------   80 (486)
T ss_dssp             TCCHHHHHE---EEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHH------HBCSCHHHHHHHHHHHHHCCC------
T ss_pred             ccCChhcce---EEeEEEeecCCEEEEEEEECCCCCEEEEEEEeccc------ccchHHHHHHHHHHHHHhCCC------
Confidence            334566777   9999999999999999973      9999987432      122345678999999999998      


Q ss_pred             CCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHH
Q 013230          197 DTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEA  272 (447)
Q Consensus       197 ~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~  272 (447)
                        ||    |+++++++..                              .+.+|+|||||.|| +|.+++.    +++..+
T Consensus        81 --pn----iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~  123 (486)
T 3mwu_A           81 --PN----IMKLFEILED------------------------------SSSFYIVGELYTGG-ELFDEIIKRKRFSEHDA  123 (486)
T ss_dssp             --TT----BCCEEEEEEC------------------------------SSEEEEEECCCCSC-BHHHHHHHHSSCCHHHH
T ss_pred             --CC----cCeEEEEEEc------------------------------CCEEEEEEEcCCCC-cHHHHHHhcCCCCHHHH
Confidence              88    9999999543                              56799999999988 8887765    999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE----EE
Q 013230          273 RSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI----FF  348 (447)
Q Consensus       273 ~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~----i~  348 (447)
                      +.++.||+.||.|||+ .||+||||||+|||++..+.                 ...+||+|||+|+.......    +.
T Consensus       124 ~~i~~qi~~al~~lH~-~~ivH~Dlkp~Nil~~~~~~-----------------~~~~kl~Dfg~a~~~~~~~~~~~~~g  185 (486)
T 3mwu_A          124 ARIIKQVFSGITYMHK-HNIVHRDLKPENILLESKEK-----------------DCDIKIIDFGLSTCFQQNTKMKDRIG  185 (486)
T ss_dssp             HHHHHHHHHHHHHHHH-TTCCCSCCSGGGEEESSSST-----------------TCCEEECSCSCTTTBCCC----CCTT
T ss_pred             HHHHHHHHHHHHHHHH-CCeEeccCchHHEEEecCCC-----------------CCCEEEEECCcCeECCCCCccCCCcC
Confidence            9999999999999999 99999999999999975431                 12699999999986654321    22


Q ss_pred             EecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCC--CCccchHHHHHHHHHhccc
Q 013230          349 LDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFD--RSSKDERDLRSLKKRLDKY  426 (447)
Q Consensus       349 ~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~--~~~~~s~~l~dLl~~mL~~  426 (447)
                      ...|++||++.+ .++.+.|||+ +|++.++++.|..|+........+..+......++  ....+++++++||++||+.
T Consensus       186 t~~y~aPE~~~~-~~~~~~Diws-lG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~  263 (486)
T 3mwu_A          186 TAYYIAPEVLRG-TYDEKCDVWS-AGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTF  263 (486)
T ss_dssp             GGGGCCGGGGGS-CCCHHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCSGGGGGSCHHHHHHHHHHTCS
T ss_pred             CCCCCCHHHhCC-CCCchhhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCcccCCCCHHHHHHHHHHcCC
Confidence            345899999988 4677779999 99999999999999977655454554443333333  2356899999999999999


Q ss_pred             c-----CHHHHHcCCCCCCCCCC
Q 013230          427 N-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       427 d-----sa~elL~HPff~~~~~~  444 (447)
                      |     ||.|+|+||||+.....
T Consensus       264 dp~~R~t~~~~l~hp~~~~~~~~  286 (486)
T 3mwu_A          264 HPSLRITATQCLEHPWIQKYSSE  286 (486)
T ss_dssp             STTTSCCHHHHHHCHHHHHTCCC
T ss_pred             ChhhCcCHHHHhcCHhhccCccc
Confidence            9     99999999999866443

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=2e-36  Score=321.17  Aligned_cols=238  Identities=19%  Similarity=0.142  Sum_probs=193.9

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|++      ||+|++.....     ........+.+|+.+|+.++|        ||    ||
T Consensus       185 ~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~-----~~~~~~~~~~~E~~iL~~l~h--------p~----Iv  247 (576)
T 2acx_A          185 TFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRI-----KKRKGEAMALNEKQILEKVNS--------RF----VV  247 (576)
T ss_dssp             GEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHH-----HHTTCHHHHHHHHHHHHHCCC--------TT----BC
T ss_pred             ceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhh-----hhhHHHHHHHHHHHHHHHcCC--------CC----Ee
Confidence            359999999999999999973      99999875422     122334678899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVT  280 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil  280 (447)
                      ++++++..                              .+.+|+||||+.|| +|.+++.      +++..++.++.||+
T Consensus       248 ~l~~~~~~------------------------------~~~l~lVmEy~~gg-~L~~~l~~~~~~~l~e~~~~~i~~qIl  296 (576)
T 2acx_A          248 SLAYAYET------------------------------KDALCLVLTLMNGG-DLKFHIYHMGQAGFPEARAVFYAAEIC  296 (576)
T ss_dssp             CEEEEEEC------------------------------SSEEEEEECCCCSC-BHHHHHHSSSSCCCCHHHHHHHHHHHH
T ss_pred             eEEEEEee------------------------------CCEEEEEEEcCCCC-cHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            99998543                              56799999999988 9988874      89999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE----EEEecCCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI----FFLDLSQDPE  356 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~----i~~~~~~~pe  356 (447)
                      .||+|||+ .||+||||||+|||++.++                    .+||+|||+|+.......    .....|++||
T Consensus       297 ~aL~yLH~-~gIvHrDLKPeNILld~~g--------------------~vKL~DFGla~~~~~~~~~~~~~GT~~Y~APE  355 (576)
T 2acx_A          297 CGLEDLHR-ERIVYRDLKPENILLDDHG--------------------HIRISDLGLAVHVPEGQTIKGRVGTVGYMAPE  355 (576)
T ss_dssp             HHHHHHHH-TTEECCCCCGGGEEECTTS--------------------CEEECCCTTCEECCTTCCEECCCSCGGGCCHH
T ss_pred             HHHHHHHH-CCEeccCCchheEEEeCCC--------------------CeEEEecccceecccCccccccCCCccccCHH
Confidence            99999999 9999999999999999987                    799999999987654422    2234589999


Q ss_pred             CCCCCCCCchHHHHHhhccCCcccccCCCCCChhH----HHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVL----WLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----  427 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~----~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----  427 (447)
                      ++.+..++...|+|+ +|++.++++.|..||....    .......+.  ......+..+++++++||++||+.|     
T Consensus       356 vl~~~~~~~~~DiwS-LGvilyeLltG~~PF~~~~~~~~~~~i~~~i~--~~~~~~p~~~s~~~~dLI~~lL~~dP~~R~  432 (576)
T 2acx_A          356 VVKNERYTFSPDWWA-LGCLLYEMIAGQSPFQQRKKKIKREEVERLVK--EVPEEYSERFSPQARSLCSQLLCKDPAERL  432 (576)
T ss_dssp             HHTTCEESSHHHHHH-HHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHH--HCCCCCCTTSCHHHHHHHHHHTCSSGGGST
T ss_pred             HHcCCCCCccchHHH-HHHHHHHHHhCCCCCcccccchhHHHHHHHhh--cccccCCccCCHHHHHHHHHhccCCHHHcC
Confidence            999877788889999 9999999999999986531    111222222  2222334678999999999999999     


Q ss_pred             -----CHHHHHcCCCCCCCC
Q 013230          428 -----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 -----sa~elL~HPff~~~~  442 (447)
                           ||+|+++||||+++.
T Consensus       433 g~~~~sa~eil~HpfF~~i~  452 (576)
T 2acx_A          433 GCRGGSAREVKEHPLFKKLN  452 (576)
T ss_dssp             TCSSSHHHHHHTSGGGTTCC
T ss_pred             CCCCCCHHHHHhChhhccCC
Confidence                 479999999999864

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=2.2e-36  Score=313.36  Aligned_cols=243  Identities=21%  Similarity=0.249  Sum_probs=175.0

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|++      ||+|++....      ......+.+.+|+.+|+.|+|        ||    ||+
T Consensus        55 y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~------~~~~~~~~~~~E~~~l~~l~h--------~n----iv~  116 (458)
T 3rp9_A           55 YEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVF------EDLIDCKRILREIAILNRLNH--------DH----VVK  116 (458)
T ss_dssp             EEECCC-------CEEEEEECC--CEEEEEEECSTT------SSHHHHHHHHHHHHHHHHCCC--------TT----BCC
T ss_pred             eEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhh------cCHHHHHHHHHHHHHHHhCCC--------CC----CCc
Confidence            49999999999999999963      9999886432      223345678999999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++...+                         ......+|+||||+. | +|.+++.    +++..++.++.||+.||
T Consensus       117 l~~~~~~~~-------------------------~~~~~~~~lv~e~~~-~-~L~~~~~~~~~l~~~~~~~~~~qi~~aL  169 (458)
T 3rp9_A          117 VLDIVIPKD-------------------------VEKFDELYVVLEIAD-S-DFKKLFRTPVYLTELHIKTLLYNLLVGV  169 (458)
T ss_dssp             EEEECCCSC-------------------------TTTCCCEEEEECCCS-E-EHHHHHHSSCCCCHHHHHHHHHHHHHHH
T ss_pred             eEEEEecCC-------------------------cccCceEEEEEeccc-c-chhhhcccCCCCCHHHHHHHHHHHHHHH
Confidence            999954321                         122456999999985 5 8888876    89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-------------------
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-------------------  344 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-------------------  344 (447)
                      +|||+ .|||||||||+||||+.++                    .+||+|||+|+.....                   
T Consensus       170 ~~LH~-~~iiHrDlKp~NILl~~~~--------------------~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~  228 (458)
T 3rp9_A          170 KYVHS-AGILHRDLKPANCLVNQDC--------------------SVKVCDFGLARTVDYPENGNSQLPISPREDDMNLV  228 (458)
T ss_dssp             HHHHH-TTCBCCCCCGGGEEECTTC--------------------CEEECCCTTCBCTTSCTTCCCCCC-----------
T ss_pred             HHHHh-CCcCCCCCChhhEEECCCC--------------------CEeecccccchhccCccccccccccCccccccccc
Confidence            99999 9999999999999999987                    7999999999875421                   


Q ss_pred             -------------CEEEEecCCCCCCC-CCCCCCchHHHHHhhccCCcccccC-----------CCCCChhH--------
Q 013230          345 -------------DIFFLDLSQDPELF-SGPKGDKQFDTYRKMKKVTEDQWEG-----------SFPKTNVL--------  391 (447)
Q Consensus       345 -------------g~i~~~~~~~pelf-~g~~~~~~~di~s~lg~~~~~~~~~-----------~~p~~~~~--------  391 (447)
                                   +.+....|++||++ .+..++...|||+ +|++.++++++           ..+|....        
T Consensus       229 ~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwS-lG~il~elltg~~~~~~~~~~~~p~f~g~~~~~~~~~~  307 (458)
T 3rp9_A          229 TFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWS-IGCIFAELLNMIKENVAYHADRGPLFPGSSCFPLSPDQ  307 (458)
T ss_dssp             ----------------CCCTTCCHHHHTTCCCCCTHHHHHH-HHHHHHHHHTTSTTTCSSGGGCCCSCC-----------
T ss_pred             cccccccccccccCCcccccccChHHhhCCCCCCcHhHHHH-HHHHHHHHHHhccccccccccccccCCCCccccccccc
Confidence                         12234449999976 4555677789999 99999999873           22222110        


Q ss_pred             ------------HHHHHHHHH--hhc------------------cCCC---------CCccchHHHHHHHHHhcccc---
Q 013230          392 ------------WLVYLVDML--LLK------------------KTFD---------RSSKDERDLRSLKKRLDKYN---  427 (447)
Q Consensus       392 ------------~~~~~~~~l--~~~------------------~~~~---------~~~~~s~~l~dLl~~mL~~d---  427 (447)
                                  ....+..++  .+.                  ..++         .....+++++|||++||++|   
T Consensus       308 ~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~  387 (458)
T 3rp9_A          308 KAGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTDLAERFPASSADAIHLLKRMLVFNPNK  387 (458)
T ss_dssp             ---------CHHHHHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHTTSCCCCCCCGGGGSTTSCHHHHHHHHHHSCSSTTT
T ss_pred             cccccccccccCCHHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHHhcCCCCCCCHHHHCCCCCHHHHHHHHHHhccCccc
Confidence                        000010000  000                  0011         12345899999999999999   


Q ss_pred             --CHHHHHcCCCCCCCCC
Q 013230          428 --SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       428 --sa~elL~HPff~~~~~  443 (447)
                        ||+|+|+||||+++..
T Consensus       388 R~t~~e~L~Hp~f~~~~~  405 (458)
T 3rp9_A          388 RITINECLAHPFFKEVRI  405 (458)
T ss_dssp             SCCHHHHHHSGGGTTTCC
T ss_pred             cCCHHHHhcCHhhhhcCC
Confidence              9999999999998754

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=1.6e-36  Score=306.95  Aligned_cols=236  Identities=21%  Similarity=0.252  Sum_probs=186.3

Q ss_pred             cceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      ...+.||+|+||.||+|+      .||+|++.....        ...+.+.+|+.+++.|+|        ||    |+++
T Consensus        92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h--------pn----Iv~~  151 (373)
T 2x4f_A           92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGM--------KDKEEVKNEISVMNQLDH--------AN----LIQL  151 (373)
T ss_dssp             EEEEECC-----CEEEEEETTTCCEEEEEEEECCSH--------HHHHHHHHHHHHHTTCCC--------TT----BCCE
T ss_pred             ecceEEecCcCEEEEEEEEcCCCcEEEEEEEccccc--------ccHHHHHHHHHHHHhCCC--------CC----CCeE
Confidence            457889999999999997      399999875421        234678999999999988        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~gL  283 (447)
                      ++++..                              .+.+|+||||+.+| +|.+++.     +++..++.++.||+.||
T Consensus       152 ~~~~~~------------------------------~~~~~lv~E~~~~~-~L~~~l~~~~~~l~~~~~~~i~~qi~~aL  200 (373)
T 2x4f_A          152 YDAFES------------------------------KNDIVLVMEYVDGG-ELFDRIIDESYNLTELDTILFMKQICEGI  200 (373)
T ss_dssp             EEEEEC------------------------------SSEEEEEEECCTTC-EEHHHHHHTGGGCCHHHHHHHHHHHHHHH
T ss_pred             EEEEEE------------------------------CCEEEEEEeCCCCC-cHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            998643                              56799999999988 8887764     89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE----EEEecCCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI----FFLDLSQDPELFS  359 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~----i~~~~~~~pelf~  359 (447)
                      +|||+ .||+||||||+|||+..+..                  ..+||+|||+|+.......    .....|++||++.
T Consensus       201 ~~LH~-~~ivH~Dlkp~NIll~~~~~------------------~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~  261 (373)
T 2x4f_A          201 RHMHQ-MYILHLDLKPENILCVNRDA------------------KQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVN  261 (373)
T ss_dssp             HHHHH-TTEECCCCCGGGEEEEETTT------------------TEEEECCCSSCEECCTTCBCCCCCSSCTTCCHHHHT
T ss_pred             HHHHH-CCcccccCCHHHEEEecCCC------------------CcEEEEeCCCceecCCccccccccCCCcEeChhhcc
Confidence            99999 99999999999999964321                  1799999999987654421    2234589999998


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc-----CHHHH
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN-----SAKEA  432 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d-----sa~el  432 (447)
                      +.....+.|||+ +|++.++++.+..|+........+..++.....++.  ...+++++++||++||++|     |++|+
T Consensus       262 ~~~~~~~~Diws-lG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~  340 (373)
T 2x4f_A          262 YDFVSFPTDMWS-VGVIAYMLLSGLSPFLGDNDAETLNNILACRWDLEDEEFQDISEEAKEFISKLLIKEKSWRISASEA  340 (373)
T ss_dssp             TCBCCHHHHHHH-HHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCSCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHH
T ss_pred             CCCCCcHHhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCChhhhccCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence            877777889999 999999999999998765444444555433333332  2457899999999999999     99999


Q ss_pred             HcCCCCCCC
Q 013230          433 IFDPFFSDL  441 (447)
Q Consensus       433 L~HPff~~~  441 (447)
                      |+||||++.
T Consensus       341 l~hp~~~~~  349 (373)
T 2x4f_A          341 LKHPWLSDH  349 (373)
T ss_dssp             HHSHHHHCH
T ss_pred             hcCcCcCCC
Confidence            999999865

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=4.4e-36  Score=297.05  Aligned_cols=237  Identities=22%  Similarity=0.301  Sum_probs=193.6

Q ss_pred             cceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      +..++||+|+||.||+|+      .||+|++....        ....+.+.+|+.+++.++|        ||    |+++
T Consensus        48 ~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~h--------~n----iv~~  107 (321)
T 2c30_A           48 DSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRK--------QQRRELLFNEVVIMRDYQH--------FN----VVEM  107 (321)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTT--------CCSHHHHHHHHHHHTTCCC--------TT----BCCE
T ss_pred             hccEEeccCCCeEEEEEEECCCCcEEEEEEEeccc--------hhHHHHHHHHHHHHHhCCC--------CC----cceE
Confidence            667899999999999996      39999987542        2234678899999999988        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLAV  285 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~y  285 (447)
                      ++++..                              .+..|+||||+.|| +|.+++.   +++..++.++.||+.||+|
T Consensus       108 ~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~l~~~~~~~i~~qi~~~L~~  156 (321)
T 2c30_A          108 YKSYLV------------------------------GEELWVLMEFLQGG-ALTDIVSQVRLNEEQIATVCEAVLQALAY  156 (321)
T ss_dssp             EEEEEE------------------------------TTEEEEEECCCCSC-BHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEE------------------------------CCEEEEEEecCCCC-CHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            998654                              46699999999988 9999887   8999999999999999999


Q ss_pred             HHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCCCCC
Q 013230          286 AEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPELFSG  360 (447)
Q Consensus       286 lH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pelf~g  360 (447)
                      ||+ .||+||||||+|||++.++                    .+||+|||+++.....     .......|++||++.+
T Consensus       157 LH~-~~ivH~Dlkp~NIll~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  215 (321)
T 2c30_A          157 LHA-QGVIHRDIKSDSILLTLDG--------------------RVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISR  215 (321)
T ss_dssp             HHH-TTEECCCCSGGGEEECTTC--------------------CEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTT
T ss_pred             HHH-CCeecCCCCHHHEEECCCC--------------------cEEEeeeeeeeecccCccccccccCCccccCHhhhcC
Confidence            999 9999999999999999887                    7999999999875433     1223345899999988


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc-cCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK-KTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~-~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      .....+.|+|+ +|.+.+++++|..|+................ ..+.....+++++++||.+||..|     |++|+++
T Consensus       216 ~~~~~~~Dv~s-lG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  294 (321)
T 2c30_A          216 SLYATEVDIWS-LGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQELLD  294 (321)
T ss_dssp             CCBCTHHHHHH-HHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             CCCCchhhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCcCccccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            77778889999 9999999999999986543333333222111 123334567899999999999999     9999999


Q ss_pred             CCCCCCCCCC
Q 013230          435 DPFFSDLIVD  444 (447)
Q Consensus       435 HPff~~~~~~  444 (447)
                      ||||.....+
T Consensus       295 hp~~~~~~~~  304 (321)
T 2c30_A          295 HPFLLQTGLP  304 (321)
T ss_dssp             SGGGGGCCCG
T ss_pred             ChhhccCCCc
Confidence            9999866443

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=1.7e-36  Score=320.45  Aligned_cols=238  Identities=18%  Similarity=0.151  Sum_probs=194.7

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|++      ||+|++.....     ........+.+|+.+++.++|        ||    |+
T Consensus       186 ~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~-----~~~~~~~~~~~E~~iL~~l~h--------p~----Iv  248 (543)
T 3c4z_A          186 WFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRL-----KKRKGYQGAMVEKKILAKVHS--------RF----IV  248 (543)
T ss_dssp             GEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHH-----HHTTCHHHHHHHHHHHHHCCC--------TT----BC
T ss_pred             heEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHh-----hhhHHHHHHHHHHHHHHhcCC--------CC----Ee
Confidence            459999999999999999973      99999875422     122344678999999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQ  278 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Q  278 (447)
                      +++++|..                              .+.+|+||||+.|| +|..++.        +++..++.++.|
T Consensus       249 ~l~~~~~~------------------------------~~~l~lVmE~~~gg-~L~~~l~~~~~~~~~l~e~~~~~~~~q  297 (543)
T 3c4z_A          249 SLAYAFET------------------------------KTDLCLVMTIMNGG-DIRYHIYNVDEDNPGFQEPRAIFYTAQ  297 (543)
T ss_dssp             CEEEEEEC------------------------------SSEEEEEECCCTTC-BHHHHHHTSSTTSCSCCHHHHHHHHHH
T ss_pred             eEEEEEee------------------------------CCEEEEEEEeccCC-CHHHHHHHhhcccccccHHHHHHHHHH
Confidence            99998543                              56799999999988 9988763        899999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCC
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQ  353 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~  353 (447)
                      |+.||.|||+ +||+||||||+|||++.++                    .+||+|||+|+......     ......|+
T Consensus       298 i~~aL~~LH~-~gIvHrDLKP~NILl~~~g--------------------~vkL~DFGla~~~~~~~~~~~~~~GT~~Y~  356 (543)
T 3c4z_A          298 IVSGLEHLHQ-RNIIYRDLKPENVLLDDDG--------------------NVRISDLGLAVELKAGQTKTKGYAGTPGFM  356 (543)
T ss_dssp             HHHHHHHHHH-TTEECCCCCGGGEEECTTS--------------------CEEECCCTTCEECCTTCCCBCCCCSCTTTS
T ss_pred             HHHHHHHHHH-cCCcccCCChHHEEEeCCC--------------------CEEEeecceeeeccCCCcccccccCCcccc
Confidence            9999999999 9999999999999999987                    79999999998764432     12345599


Q ss_pred             CCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChh----HHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc--
Q 013230          354 DPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV----LWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       354 ~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~----~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d--  427 (447)
                      +||++.+..++...|+|+ +|++.+++++|..||...    ........++.  .....+..+++++++||++||+.|  
T Consensus       357 APE~l~~~~~~~~~DiwS-lGvilyelltG~~PF~~~~~~~~~~~~~~~i~~--~~~~~p~~~s~~~~~li~~lL~~dP~  433 (543)
T 3c4z_A          357 APELLLGEEYDFSVDYFA-LGVTLYEMIAARGPFRARGEKVENKELKQRVLE--QAVTYPDKFSPASKDFCEALLQKDPE  433 (543)
T ss_dssp             CHHHHTTCCBCTHHHHHH-HHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHH--CCCCCCTTSCHHHHHHHHHHSCSSGG
T ss_pred             ChhhhcCCCCChHHhcCc-chHHHHHHHhCCCCCCCCccchhHHHHHHHHhh--cccCCCcccCHHHHHHHHHhccCCHh
Confidence            999999987888889999 999999999999998653    12222233332  233344678999999999999999  


Q ss_pred             --------CHHHHHcCCCCCCCC
Q 013230          428 --------SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 --------sa~elL~HPff~~~~  442 (447)
                              +|+++++||||+++.
T Consensus       434 ~R~~~~~~~a~ei~~Hpff~~i~  456 (543)
T 3c4z_A          434 KRLGFRDGSCDGLRTHPLFRDIS  456 (543)
T ss_dssp             GSCCCBTTBSHHHHTSGGGTTCC
T ss_pred             HCCCCcccCHHHHHcCccccCCC
Confidence                    469999999999864

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=5e-36  Score=293.80  Aligned_cols=241  Identities=19%  Similarity=0.207  Sum_probs=187.1

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+++++||+|+||.||+|++      ||+|++....      ......+.+.+|+.+++.++|        ||    |+
T Consensus         4 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------~~----i~   65 (311)
T 4agu_A            4 KYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESE------DDPVIKKIALREIRMLKQLKH--------PN----LV   65 (311)
T ss_dssp             CEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCC------C-HHHHHHHHHHHHHHHHCCC--------TT----BC
T ss_pred             cceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccc------cchHHHHHHHHHHHHHHhCCC--------CC----cc
Confidence            349999999999999999974      9999886442      222334667899999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              .+..|+||||+.+| +|..++.    +++..++.++.||+.|
T Consensus        66 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~l~~~~~~~~~~~~~~~~~i~~~l~~~  114 (311)
T 4agu_A           66 NLLEVFRR------------------------------KRRLHLVFEYCDHT-VLHELDRYQRGVPEHLVKSITWQTLQA  114 (311)
T ss_dssp             CEEEEEEE------------------------------TTEEEEEEECCSEE-HHHHHHHTSSCCCHHHHHHHHHHHHHH
T ss_pred             chhheeec------------------------------CCeEEEEEEeCCCc-hHHHHHhhhcCCCHHHHHHHHHHHHHH
Confidence            99999654                              56699999999977 8888765    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pel  357 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+|+.....     .......|++||+
T Consensus       115 l~~lH~-~~ivH~dlkp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  173 (311)
T 4agu_A          115 VNFCHK-HNCIHRDVKPENILITKHS--------------------VIKLCDFGFARLLTGPSDYYDDEVATRWYRSPEL  173 (311)
T ss_dssp             HHHHHH-TTEECCCCSGGGEEECTTS--------------------CEEECCCTTCEECC------------GGGCCHHH
T ss_pred             HHHHHH-CCCcCCCCChhhEEEcCCC--------------------CEEEeeCCCchhccCcccccCCCcCCccccChHH
Confidence            999999 9999999999999999887                    7999999999876543     2234455899999


Q ss_pred             CCC-CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh-------------------hccCCCC---------
Q 013230          358 FSG-PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL-------------------LKKTFDR---------  408 (447)
Q Consensus       358 f~g-~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~-------------------~~~~~~~---------  408 (447)
                      +.+ ...+.+.|+|+ +|.+.+++++|..|+..............                   .....+.         
T Consensus       174 ~~~~~~~~~~~Di~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (311)
T 4agu_A          174 LVGDTQYGPPVDVWA-IGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLEL  252 (311)
T ss_dssp             HHTCSCCCTHHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHH
T ss_pred             HhcCCCCCcchhhHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccccccccCcCCCccccchhhh
Confidence            876 34566779999 99999999999988865432222111110                   0001111         


Q ss_pred             -CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          409 -SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       409 -~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                       ...++.++.+||++||..|     |++|+|+||||+++...
T Consensus       253 ~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~~  294 (311)
T 4agu_A          253 KFPNISYPALGLLKGCLHMDPTERLTCEQLLHHPYFENIREI  294 (311)
T ss_dssp             HCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTSGGGTTCC--
T ss_pred             hcccccHHHHHHHHHHccCChhhcCCHHHHhcChHHHhccCH
Confidence             1347889999999999999     99999999999987543

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=9e-37  Score=318.25  Aligned_cols=237  Identities=19%  Similarity=0.227  Sum_probs=195.5

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|++.+.||+|+||.||+|++      ||+|++.....     ........+.+|+.+++.++|        ||    |+
T Consensus        17 ~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~-----~~~~~~~~~~~Ei~~l~~l~H--------pn----Iv   79 (476)
T 2y94_A           17 HYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKI-----RSLDVVGKIRREIQNLKLFRH--------PH----II   79 (476)
T ss_dssp             TEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHH-----HHTTTHHHHHHHHHHHTTCCC--------TT----BC
T ss_pred             CEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhc-----cCHHHHHHHHHHHHHHHhCCC--------CC----CC
Confidence            459999999999999999973      99999874321     122344678999999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              .+.+|+||||+.|| +|.+++.    +++..++.++.||+.|
T Consensus        80 ~l~~~~~~------------------------------~~~~~lv~E~~~gg-~L~~~l~~~~~l~~~~~~~i~~qi~~a  128 (476)
T 2y94_A           80 KLYQVIST------------------------------PSDIFMVMEYVSGG-ELFDYICKNGRLDEKESRRLFQQILSG  128 (476)
T ss_dssp             CEEEEEEC------------------------------SSEEEEEEECCSSE-EHHHHTTSSSSCCHHHHHHHHHHHHHH
T ss_pred             cEEEEEEE------------------------------CCEEEEEEeCCCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            99999543                              56799999999988 9999886    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPELF  358 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pelf  358 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+|+......    ......|++||++
T Consensus       129 L~~LH~-~givHrDLkp~NIll~~~~--------------------~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~  187 (476)
T 2y94_A          129 VDYCHR-HMVVHRDLKPENVLLDAHM--------------------NAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVI  187 (476)
T ss_dssp             HHHHHT-TTEECSCCSGGGEEECTTC--------------------CEEECCCSSCEECCTTCCBCCCCSCSTTCCHHHH
T ss_pred             HHHHHH-CCCCcccccHHHEEEecCC--------------------CeEEEeccchhhccccccccccCCCcCeEChhhc
Confidence            999999 9999999999999999887                    79999999998765432    1233458999999


Q ss_pred             CCCCC-CchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHH
Q 013230          359 SGPKG-DKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEA  432 (447)
Q Consensus       359 ~g~~~-~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~el  432 (447)
                      .+... ..+.|||+ +|++.++++.|..||...........+.  ...+..+..+++++++||++||+.|     |++|+
T Consensus       188 ~~~~~~~~~~DiwS-lGvil~elltG~~Pf~~~~~~~~~~~i~--~~~~~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~ei  264 (476)
T 2y94_A          188 SGRLYAGPEVDIWS-SGVILYALLCGTLPFDDDHVPTLFKKIC--DGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDI  264 (476)
T ss_dssp             TTCCBCSHHHHHHH-HHHHHHHHHHSSCSSCCSSSHHHHHHHH--TTCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred             cCCCCCCCcceehh-hHHHHHHHhhCCCCCCCCCHHHHHHHHh--cCCcCCCccCCHHHHHHHHHHcCCCchhCcCHHHH
Confidence            88665 35669999 9999999999999987654444444443  2344455678999999999999999     99999


Q ss_pred             HcCCCCCCC
Q 013230          433 IFDPFFSDL  441 (447)
Q Consensus       433 L~HPff~~~  441 (447)
                      ++||||+..
T Consensus       265 l~hp~~~~~  273 (476)
T 2y94_A          265 REHEWFKQD  273 (476)
T ss_dssp             HTCHHHHTT
T ss_pred             HhCHHhhhc
Confidence            999999753

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=4.4e-36  Score=309.17  Aligned_cols=243  Identities=18%  Similarity=0.218  Sum_probs=187.2

Q ss_pred             CcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+++++||+|+||.||+|+      .||+|++...         ......+.+|+.+++.++|..+     .+ |++|++
T Consensus        99 y~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~---------~~~~~~~~~E~~~l~~l~~~~~-----~~-~~~iv~  163 (429)
T 3kvw_A           99 YEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE---------KRFHRQAAEEIRILEHLRKQDK-----DN-TMNVIH  163 (429)
T ss_dssp             EEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC---------HHHHHHHHHHHHHHHHHHTTCT-----TS-CSCBCC
T ss_pred             EEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc---------cchHHHHHHHHHHHHHHhhccc-----cC-CcCEEE
Confidence            4999999999999999996      3999998632         2234667899999999987543     33 666999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +++++..                              .+.+|+||||+. | +|.+++.      +++..++.++.||+.
T Consensus       164 ~~~~~~~------------------------------~~~~~lv~e~~~-~-~L~~~l~~~~~~~~~~~~~~~i~~qi~~  211 (429)
T 3kvw_A          164 MLENFTF------------------------------RNHICMTFELLS-M-NLYELIKKNKFQGFSLPLVRKFAHSILQ  211 (429)
T ss_dssp             EEEEEEE------------------------------TTEEEEEECCCC-C-BHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred             EEeeccc------------------------------CCeEEEEEeccC-C-CHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence            9999654                              567999999996 5 8888775      899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--CEEEEecCCCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--DIFFLDLSQDPELFS  359 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--g~i~~~~~~~pelf~  359 (447)
                      ||+|||+ .||+||||||+|||++.++.                  ..+||+|||+|+.....  ..+....|++||++.
T Consensus       212 aL~~LH~-~~ivHrDlKp~NILl~~~~~------------------~~vkL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~  272 (429)
T 3kvw_A          212 CLDALHK-NRIIHCDLKPENILLKQQGR------------------SGIKVIDFGSSCYEHQRVYTYIQSRFYRAPEVIL  272 (429)
T ss_dssp             HHHHHHH-HTEECSCCSGGGEEESSTTS------------------CCEEECCCTTCEETTCCCCSSCSCGGGCCHHHHH
T ss_pred             HHHHHHH-CCeecCCCCHHHeEEccCCC------------------cceEEeecccceecCCcccccCCCCCccChHHHh
Confidence            9999999 99999999999999998861                  13999999999875543  122344589999998


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh--------------------ccCCCC-----------
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL--------------------KKTFDR-----------  408 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~--------------------~~~~~~-----------  408 (447)
                      +...+.+.|||+ +|++.+++++|..|+........+..+...                    ...++.           
T Consensus       273 ~~~~~~~~DiwS-lG~il~elltG~~pf~~~~~~~~l~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (429)
T 3kvw_A          273 GARYGMPIDMWS-LGCILAELLTGYPLLPGEDEGDQLACMIELLGMPSQKLLDASKRAKNFVSSKGYPRYCTVTTLSDGS  351 (429)
T ss_dssp             TBCCCTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTBTTHHHHBCTTSCBTTSCEECCCC--
T ss_pred             CCCCCchHHHHh-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHhhhhhhhccCCCCCccccccccccccc
Confidence            888888889999 999999999999888654322222211100                    000000           


Q ss_pred             --------------------------CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          409 --------------------------SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       409 --------------------------~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                                                ....+++++|||++||++|     ||+|+|+||||++...
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dli~~~L~~dP~~Rpta~e~L~Hpw~~~~~~  417 (429)
T 3kvw_A          352 VVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWLRRRLP  417 (429)
T ss_dssp             CEECCEECTTCCEECSTTCSCHHHHTTTCCCHHHHHHHHHHTCSSTTTSCCHHHHHTSTTTC----
T ss_pred             ccccccccchhhccCCccchhhHhhccccchHHHHHHHHHHCCCChhhCCCHHHHhCChhhccCCC
Confidence                                      0123788999999999999     9999999999997643

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=2.5e-36  Score=300.20  Aligned_cols=254  Identities=22%  Similarity=0.220  Sum_probs=199.4

Q ss_pred             CcchhhhhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccC
Q 013230          121 PTKLLDLFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRN  194 (447)
Q Consensus       121 ~~~~~~~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~  194 (447)
                      .....++.++|   ++.+.||+|+||.||+|++      ||+|++.....   ........+.+.+|+.+++.++|    
T Consensus        18 ~~~~~~~~~~y---~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~~~~~E~~~l~~l~h----   87 (345)
T 3hko_A           18 GGSLLELQKKY---HLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKI---RQINPKDVERIKTEVRLMKKLHH----   87 (345)
T ss_dssp             CBCHHHHHHHE---EEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHH---HC---CHHHHHHHHHHHHHHCCC----
T ss_pred             Cchhhhhhhhe---eecceeeecCCeEEEEEEECCCCceEEEeehhhhhh---cccCHHHHHHHHHHHHHHHhCCC----
Confidence            34556777787   9999999999999999974      89999875321   11123345788999999999988    


Q ss_pred             CCCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------
Q 013230          195 EGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------  266 (447)
Q Consensus       195 ~~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------  266 (447)
                          ||    |+++++++..                              .+..|+|||||.|| +|.+++.        
T Consensus        88 ----pn----iv~~~~~~~~------------------------------~~~~~lv~e~~~gg-~L~~~l~~~~~~~~~  128 (345)
T 3hko_A           88 ----PN----IARLYEVYED------------------------------EQYICLVMELCHGG-HLLDKLNVFIDDSTG  128 (345)
T ss_dssp             ----TT----BCCEEEEEEC------------------------------SSEEEEEEECCCSC-BHHHHEEEEEETTTT
T ss_pred             ----CC----cceeehhhcc------------------------------CCeEEEEEeCCCCC-cHHHHHHHhhccccc
Confidence                88    9999999643                              56799999999988 9988873        


Q ss_pred             ------------------------------------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCc
Q 013230          267 ------------------------------------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSV  310 (447)
Q Consensus       267 ------------------------------------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~  310 (447)
                                                          +++..++.++.||+.||+|||+ .||+||||||+|||++.++. 
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~-~~ivH~Dlkp~NIll~~~~~-  206 (345)
T 3hko_A          129 KCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHN-QGICHRDIKPENFLFSTNKS-  206 (345)
T ss_dssp             EEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHHHH-TTEECCCCCGGGEEESCSSS-
T ss_pred             ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH-CCccccCCChhhEEEecCCC-
Confidence                                                3678899999999999999999 99999999999999987651 


Q ss_pred             cccccccCcccccccCCCcEEEeeccceeecCCC---------CEEEEecCCCCCCCCC--CCCCchHHHHHhhccCCcc
Q 013230          311 TMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---------DIFFLDLSQDPELFSG--PKGDKQFDTYRKMKKVTED  379 (447)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---------g~i~~~~~~~pelf~g--~~~~~~~di~s~lg~~~~~  379 (447)
                                       ..+||+|||+|+.....         .......|++||++.+  ...+.+.|||+ +|.+.++
T Consensus       207 -----------------~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~Diws-lG~il~e  268 (345)
T 3hko_A          207 -----------------FEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWS-AGVLLHL  268 (345)
T ss_dssp             -----------------CCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHH-HHHHHHH
T ss_pred             -----------------ceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHH-HHHHHHH
Confidence                             26999999999865321         1122344899999875  45556779999 9999999


Q ss_pred             cccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          380 QWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       380 ~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                      ++.+..|+............+.....++.  ...+++++++||++||..|     |+.|+|+||||+++..
T Consensus       269 l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~hp~~~~~~~  339 (345)
T 3hko_A          269 LLMGAVPFPGVNDADTISQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDERFDAMRALQHPWISQFSD  339 (345)
T ss_dssp             HHHSSCSSCCSSHHHHHHHHHHCCCCTTSGGGGGSCHHHHHHHHHHSCSCTTTSCCHHHHHHSHHHHTTSS
T ss_pred             HHHCCCCCCCCChHHHHHHHHhcccccCCcccccCCHHHHHHHHHHcCCChhHCCCHHHHhcChhhccChH
Confidence            99999999765554555555433333333  2347899999999999999     9999999999998754

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=7.6e-36  Score=294.69  Aligned_cols=253  Identities=19%  Similarity=0.199  Sum_probs=199.6

Q ss_pred             hhhhhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCC
Q 013230          124 LLDLFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGD  197 (447)
Q Consensus       124 ~~~~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~  197 (447)
                      ...+.++|   ++.+.||+|+||.||+|++      ||+|++......  ........+.+.+|+.+++.++|       
T Consensus         7 ~~~~~~~y---~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~~~~~~E~~~l~~l~h-------   74 (321)
T 2a2a_A            7 QQKVEDFY---DIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSR--ASRRGVSREEIEREVSILRQVLH-------   74 (321)
T ss_dssp             CSCHHHHE---EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSS--SCSSSBCHHHHHHHHHHHHHCCC-------
T ss_pred             chhhhccE---EEeeEeeecCCEEEEEEEECCCCeEEEEEEEeccccc--ccccchhHHHHHHHHHHHHhCCC-------
Confidence            34455566   9999999999999999973      999998765321  11111235678999999999998       


Q ss_pred             CCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHH
Q 013230          198 TLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEAR  273 (447)
Q Consensus       198 ~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~  273 (447)
                       ||    |+++++++..                              .+.+|+||||+.+| +|.+++.    +++..++
T Consensus        75 -~~----iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~  118 (321)
T 2a2a_A           75 -HN----VITLHDVYEN------------------------------RTDVVLILELVSGG-ELFDFLAQKESLSEEEAT  118 (321)
T ss_dssp             -TT----BCCEEEEEEC------------------------------SSEEEEEECCCCSC-BHHHHHHTCSCEEHHHHH
T ss_pred             -CC----cceEEEEEec------------------------------CCEEEEEEEcCCCC-cHHHHHHhcCCCCHHHHH
Confidence             88    9999998543                              56799999999988 9999886    8999999


Q ss_pred             HHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEE
Q 013230          274 SLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFL  349 (447)
Q Consensus       274 ~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~  349 (447)
                      .++.||+.||+|||+ .||+||||||+|||++.++.                ....+||+|||+++......    ....
T Consensus       119 ~i~~qi~~aL~~lH~-~~ivH~dikp~NIl~~~~~~----------------~~~~~kl~Dfg~~~~~~~~~~~~~~~gt  181 (321)
T 2a2a_A          119 SFIKQILDGVNYLHT-KKIAHFDLKPENIMLLDKNI----------------PIPHIKLIDFGLAHEIEDGVEFKNIFGT  181 (321)
T ss_dssp             HHHHHHHHHHHHHHH-TTEECCCCSGGGEEESCTTS----------------SSCCEEECCCTTCEECCTTCCCCCCCSC
T ss_pred             HHHHHHHHHHHHHHh-CCeecCCCChHHEEEecCCC----------------CcCCEEEccCccceecCccccccccCCC
Confidence            999999999999999 99999999999999988751                01159999999998765431    2233


Q ss_pred             ecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc
Q 013230          350 DLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       350 ~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d  427 (447)
                      ..|++||++.+.......|+|+ +|.+.++++++..|+........+..+......++.  ....++++++||++||..|
T Consensus       182 ~~y~aPE~~~~~~~~~~~Di~s-lG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~d  260 (321)
T 2a2a_A          182 PEFVAPEIVNYEPLGLEADMWS-IGVITYILLSGASPFLGDTKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKE  260 (321)
T ss_dssp             GGGCCHHHHTTCCCCTHHHHHH-HHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSS
T ss_pred             CCccCcccccCCCCCCccccHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccccChhhhcccCHHHHHHHHHHcCCC
Confidence            4589999998877788889999 999999999999998765444444443322222221  1357889999999999999


Q ss_pred             -----CHHHHHcCCCCCCCC
Q 013230          428 -----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 -----sa~elL~HPff~~~~  442 (447)
                           |++|+|+||||+...
T Consensus       261 p~~Rps~~e~l~hp~~~~~~  280 (321)
T 2a2a_A          261 TRKRLTIQEALRHPWITPVD  280 (321)
T ss_dssp             TTTSCCHHHHHHSTTTSCSS
T ss_pred             hhhCcCHHHHhcCccccCCC
Confidence                 999999999998764

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=2.8e-36  Score=297.98  Aligned_cols=239  Identities=19%  Similarity=0.256  Sum_probs=185.3

Q ss_pred             CCcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhcc-ccccCCCCCCCcccce
Q 013230          133 DPENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN-HLRRNEGDTLNACTTF  205 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~n~~~~i  205 (447)
                      +|+++++||+|+||.||+|+      .||+|++...           ..+.+.+|+.+++.|+ |        ||    |
T Consensus        37 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-----------~~~~~~~E~~~l~~l~~~--------~~----i   93 (330)
T 3nsz_A           37 DYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV-----------KKKKIKREIKILENLRGG--------PN----I   93 (330)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-----------CHHHHHHHHHHHHHHTTS--------TT----B
T ss_pred             ceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc-----------chHHHHHHHHHHHHcCCC--------CC----E
Confidence            35999999999999999996      3999988632           2356899999999997 5        66    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-CCHHHHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-l~~~~~~~i~~Qil~gL~  284 (447)
                      +++++++...                            .....++||||+.+| +|.+++. +++..++.++.||+.||+
T Consensus        94 ~~~~~~~~~~----------------------------~~~~~~lv~e~~~~~-~l~~~~~~~~~~~~~~~~~qi~~~l~  144 (330)
T 3nsz_A           94 ITLADIVKDP----------------------------VSRTPALVFEHVNNT-DFKQLYQTLTDYDIRFYMYEILKALD  144 (330)
T ss_dssp             CCEEEEEECT----------------------------TTCCEEEEEECCCCC-CHHHHGGGCCHHHHHHHHHHHHHHHH
T ss_pred             EEeeeeeccC----------------------------CCCceEEEEeccCch-hHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            9999986431                            145689999999988 9999887 999999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPELFSG  360 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pelf~g  360 (447)
                      |||+ .||+||||||+|||++.++.                   .+||+|||+|+......    ......|++||++.+
T Consensus       145 ~lH~-~~ivH~Dikp~Nil~~~~~~-------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~y~aPE~~~~  204 (330)
T 3nsz_A          145 YCHS-MGIMHRDVKPHNVMIDHEHR-------------------KLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVD  204 (330)
T ss_dssp             HHHH-TTEECCCCSGGGEEEETTTT-------------------EEEECCCTTCEECCTTCCCCSCCSCGGGCCHHHHTT
T ss_pred             HHHh-CCeeeCCCCHHHEEEcCCCC-------------------EEEEEeCCCceEcCCCCccccccccccccChhhhcC
Confidence            9999 99999999999999997753                   79999999998754432    123344889998877


Q ss_pred             -CCCCchHHHHHhhccCCcccccCCCCCChh----HHHHHHHHHH--------hhccC----------------------
Q 013230          361 -PKGDKQFDTYRKMKKVTEDQWEGSFPKTNV----LWLVYLVDML--------LLKKT----------------------  405 (447)
Q Consensus       361 -~~~~~~~di~s~lg~~~~~~~~~~~p~~~~----~~~~~~~~~l--------~~~~~----------------------  405 (447)
                       .....+.|||+ +|.+.++++.+..|+...    .........+        .....                      
T Consensus       205 ~~~~~~~~Diws-lG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (330)
T 3nsz_A          205 YQMYDYSLDMWS-LGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERF  283 (330)
T ss_dssp             CCCCCTHHHHHH-HHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHHCCCCCCCGGGG
T ss_pred             CCcCCchhhHHH-HHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccccchhhhhhhccccchhhh
Confidence             45666779999 999999999999888421    0000000000        00000                      


Q ss_pred             --CCCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          406 --FDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       406 --~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                        ......+++++++||++||.+|     ||+|+|+||||+++..+
T Consensus       284 ~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~hp~f~~~~~~  329 (330)
T 3nsz_A          284 VHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKD  329 (330)
T ss_dssp             CCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTSGGGTTCC--
T ss_pred             ccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcCccHhhhccC
Confidence              0011236899999999999999     99999999999988654

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=2.2e-36  Score=291.95  Aligned_cols=237  Identities=19%  Similarity=0.214  Sum_probs=193.2

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|++      ||+|++.....     ........+.+|+.+++.++|        ||    |++
T Consensus        11 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~~~~~~e~~~l~~l~h--------~~----i~~   73 (279)
T 3fdn_A           11 FEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQL-----EKAGVEHQLRREVEIQSHLRH--------PN----ILR   73 (279)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHH-----HHHTCHHHHHHHHHHHTTCCC--------TT----BCC
T ss_pred             EEEeeEEecCCCeEEEEEEEccCCcEEEEEEEecccc-----chhhHHHHHHHHHHHHHcCCC--------CC----Ccc
Confidence            49999999999999999973      99998864321     122334678899999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++..                              .+..|+||||+.+| +|.+++.    +++..++.++.||+.||
T Consensus        74 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~l~~~l~~~~~~~~~~~~~~~~qi~~~l  122 (279)
T 3fdn_A           74 LYGYFHD------------------------------ATRVYLILEYAPLG-TVYRELQKLSKFDEQRTATYITELANAL  122 (279)
T ss_dssp             EEEEEEC------------------------------SSEEEEEECCCTTE-EHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             hhheEec------------------------------CCEEEEEEecCCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            9998543                              56699999999988 8888876    89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC---EEEEecCCCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED---IFFLDLSQDPELFSG  360 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g---~i~~~~~~~pelf~g  360 (447)
                      +|||+ .||+||||||+|||++.++                    .+||+|||++.......   ......|++||.+.+
T Consensus       123 ~~LH~-~~i~H~dlkp~Nili~~~~--------------------~~~l~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~  181 (279)
T 3fdn_A          123 SYCHS-KRVIHRDIKPENLLLGSAG--------------------ELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEG  181 (279)
T ss_dssp             HHHHT-TTCEECCCCGGGEEECTTS--------------------CEEECSCCEESCC--------CCCCTTCCHHHHTT
T ss_pred             HHHHh-CCEecccCChHhEEEcCCC--------------------CEEEEeccccccCCcccccccCCCCCccCHhHhcc
Confidence            99999 9999999999999999887                    79999999987654332   122345899999988


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHcC
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      .......|+|+ +|.+.++++.+..|+.............  ...+..+...++++++||++||..|     |++|+++|
T Consensus       182 ~~~~~~~Di~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h  258 (279)
T 3fdn_A          182 RMHDEKVDLWS-LGVLCYEFLVGKPPFEANTYQETYKRIS--RVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEH  258 (279)
T ss_dssp             CCCCTTHHHHH-HHHHHHHHHHSSCTTCCSSHHHHHHHHH--HTCCCCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred             CCCCccchhHh-HHHHHHHHHHCCCCCCCCcHHHHHHHHH--hCCCCCCCcCCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence            77777889999 9999999999999987655444444433  2334445668999999999999999     99999999


Q ss_pred             CCCCCCC
Q 013230          436 PFFSDLI  442 (447)
Q Consensus       436 Pff~~~~  442 (447)
                      |||+...
T Consensus       259 ~~~~~~~  265 (279)
T 3fdn_A          259 PWITANS  265 (279)
T ss_dssp             HHHHHHC
T ss_pred             ccccCCc
Confidence            9998543

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=9.7e-36  Score=297.34  Aligned_cols=258  Identities=22%  Similarity=0.285  Sum_probs=192.6

Q ss_pred             cchhhhhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCC
Q 013230          122 TKLLDLFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNE  195 (447)
Q Consensus       122 ~~~~~~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~  195 (447)
                      .++.+..++|   +++++||+|+||.||+|++      ||+|++.....      .......+.+|+.+++.++|     
T Consensus        10 ~~~~~~~~~y---~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~------~~~~~~~~~~E~~~l~~l~h-----   75 (351)
T 3mi9_A           10 CPFCDEVSKY---EKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENE------KEGFPITALREIKILQLLKH-----   75 (351)
T ss_dssp             CTTSCBGGGE---EEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSC------SSSSCHHHHHHHHHHHHCCC-----
T ss_pred             ccccccccce---eEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccc------cccchHHHHHHHHHHHhccC-----
Confidence            3444556666   9999999999999999974      99998865432      23344677899999999998     


Q ss_pred             CCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHH
Q 013230          196 GDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNIN  270 (447)
Q Consensus       196 ~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~  270 (447)
                         ||    |+++++++......                      -....+.+|+||||+. | +|...+.     +++.
T Consensus        76 ---~~----iv~~~~~~~~~~~~----------------------~~~~~~~~~lv~e~~~-~-~l~~~l~~~~~~~~~~  124 (351)
T 3mi9_A           76 ---EN----VVNLIEICRTKASP----------------------YNRCKGSIYLVFDFCE-H-DLAGLLSNVLVKFTLS  124 (351)
T ss_dssp             ---TT----BCCEEEEEEEC------------------------------CEEEEEEECCS-E-EHHHHHHCTTSCCCHH
T ss_pred             ---CC----cccHhheeeccccc----------------------cccCCceEEEEEeccC-C-CHHHHHhhccCCCCHH
Confidence               88    99999997652210                      0011456899999998 4 6665544     8999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------
Q 013230          271 EARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------  344 (447)
Q Consensus       271 ~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------  344 (447)
                      .++.++.||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+|+.....      
T Consensus       125 ~~~~i~~qi~~~l~~LH~-~~ivH~Dlkp~NIl~~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~  183 (351)
T 3mi9_A          125 EIKRVMQMLLNGLYYIHR-NKILHRDMKAANVLITRDG--------------------VLKLADFGLARAFSLAKNSQPN  183 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TTEECCCCSGGGEEECTTS--------------------CEEECCCTTCEECCCCSSSSCC
T ss_pred             HHHHHHHHHHHHHHHHHH-CCeeCCCCCHHHEEEcCCC--------------------CEEEccchhccccccccccccc
Confidence            999999999999999999 9999999999999999887                    7999999999875421      


Q ss_pred             ---CEEEEecCCCCCCCCCCC-CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCC-----CCc-----
Q 013230          345 ---DIFFLDLSQDPELFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFD-----RSS-----  410 (447)
Q Consensus       345 ---g~i~~~~~~~pelf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~-----~~~-----  410 (447)
                         .......|++||++.+.. .+.+.|||+ +|.+.++++++..|+........+..+......++     ...     
T Consensus       184 ~~~~~~gt~~y~aPE~~~~~~~~~~~~Diws-lG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  262 (351)
T 3mi9_A          184 RYTNRVVTLWYRPPELLLGERDYGPPIDLWG-AGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELY  262 (351)
T ss_dssp             CCCSSCSCGGGCCHHHHTTCCSCCTHHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCGGG
T ss_pred             ccCCcccccCccCchhhcCCCCCCcHhHHHH-HHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhccccccchhh
Confidence               112244589999887644 466779999 99999999999988865433322222211111111     100     


Q ss_pred             --------------------cchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCCCC
Q 013230          411 --------------------KDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVDRP  446 (447)
Q Consensus       411 --------------------~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~~~  446 (447)
                                          ..++++++||++||++|     |++|+|+||||++...+..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~~~  323 (351)
T 3mi9_A          263 EKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPMPSD  323 (351)
T ss_dssp             TSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGSSSCCCC
T ss_pred             cccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCCCCcCCCCCccc
Confidence                                02678999999999999     9999999999998766543

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=3.3e-36  Score=315.30  Aligned_cols=243  Identities=23%  Similarity=0.340  Sum_probs=192.2

Q ss_pred             hhhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCC
Q 013230          126 DLFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTL  199 (447)
Q Consensus       126 ~~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~  199 (447)
                      .+.++|   +++++||+|+||.||+|++      +|+|++.....      .......+.+|+.+++.++|        |
T Consensus        34 ~~~~~y---~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~------~~~~~~~~~~E~~~l~~l~h--------p   96 (494)
T 3lij_A           34 HLSEMY---QRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSV------STSSNSKLLEEVAVLKLLDH--------P   96 (494)
T ss_dssp             CHHHHE---EEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----------CTTHHHHHHHHHHTTCCC--------T
T ss_pred             chhcCe---EEeeEEecCCCEEEEEEEECCCCcEEEEEEEecccc------CchHHHHHHHHHHHHHhCCC--------C
Confidence            344556   9999999999999999974      89999875432      22234678999999999998        8


Q ss_pred             CcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHH
Q 013230          200 NACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSL  275 (447)
Q Consensus       200 n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i  275 (447)
                      |    |+++++++..                              .+.+|+|||||.|| +|.+++.    +++..++.+
T Consensus        97 n----iv~~~~~~~~------------------------------~~~~~lv~e~~~~g-~L~~~~~~~~~~~~~~~~~i  141 (494)
T 3lij_A           97 N----IMKLYDFFED------------------------------KRNYYLVMECYKGG-ELFDEIIHRMKFNEVDAAVI  141 (494)
T ss_dssp             T----BCCEEEEEEC------------------------------SSEEEEEEECCCSC-BHHHHHHHHSSCCHHHHHHH
T ss_pred             C----CCeEEEEEEe------------------------------CCEEEEEEecCCCC-cHHHHHHHcCCCCHHHHHHH
Confidence            8    9999999643                              56799999999988 8887765    899999999


Q ss_pred             HHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEec
Q 013230          276 LVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDL  351 (447)
Q Consensus       276 ~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~  351 (447)
                      +.||+.||+|||+ .||+||||||+|||++..+.                 ...+||+|||+|+......    .+....
T Consensus       142 ~~qi~~~l~~lH~-~~ivH~Dlkp~Nil~~~~~~-----------------~~~~kl~DfG~a~~~~~~~~~~~~~gt~~  203 (494)
T 3lij_A          142 IKQVLSGVTYLHK-HNIVHRDLKPENLLLESKEK-----------------DALIKIVDFGLSAVFENQKKMKERLGTAY  203 (494)
T ss_dssp             HHHHHHHHHHHHH-TTEECSCCSGGGEEESCSST-----------------TCCEEECCCTTCEECBTTBCBCCCCSCTT
T ss_pred             HHHHHHHHHHHHH-CCceeccCChhhEEEeCCCC-----------------CCcEEEEECCCCeECCCCccccccCCCcC
Confidence            9999999999999 99999999999999987541                 1159999999998765432    223445


Q ss_pred             CCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc--
Q 013230          352 SQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       352 ~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d--  427 (447)
                      |++||++.+ .++.+.|||+ +|++.++++.|..|+........+..+......++.  ...+++++++||++||++|  
T Consensus       204 y~aPE~l~~-~~~~~~Diws-lG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~  281 (494)
T 3lij_A          204 YIAPEVLRK-KYDEKCDVWS-IGVILFILLAGYPPFGGQTDQEILRKVEKGKYTFDSPEWKNVSEGAKDLIKQMLQFDSQ  281 (494)
T ss_dssp             TCCHHHHTT-CBCTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCSGGGTTSCHHHHHHHHHHTCSSTT
T ss_pred             eeCHHHHcc-cCCCchhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCchhcccCCHHHHHHHHHHCCCChh
Confidence            899999876 5677789999 999999999999999776555555554433333333  2457999999999999999  


Q ss_pred             ---CHHHHHcCCCCCC
Q 013230          428 ---SAKEAIFDPFFSD  440 (447)
Q Consensus       428 ---sa~elL~HPff~~  440 (447)
                         ||.|+|+||||++
T Consensus       282 ~R~s~~e~l~hp~~~~  297 (494)
T 3lij_A          282 RRISAQQALEHPWIKE  297 (494)
T ss_dssp             TSCCHHHHHTCHHHHH
T ss_pred             hCccHHHHhcCccccc
Confidence               9999999999975

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=5e-36  Score=289.73  Aligned_cols=241  Identities=18%  Similarity=0.193  Sum_probs=195.7

Q ss_pred             CCcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||+|+||.||+|.      .||+|++.....      .....+.+.+|+.+++.++|        ||    |+
T Consensus         7 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~------~~~~~~~~~~e~~~l~~l~h--------~~----i~   68 (284)
T 3kk8_A            7 NYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKL------SARDFQKLEREARICRKLQH--------PN----IV   68 (284)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGC------CHHHHHHHHHHHHHHHHCCC--------TT----BC
T ss_pred             hhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccC------CHHHHHHHHHHHHHHHHcCC--------CC----cC
Confidence            35999999999999999996      399999875432      22334678899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              .+..|+||||+.+| +|.+++.    +++..++.++.||+.|
T Consensus        69 ~~~~~~~~------------------------------~~~~~~v~e~~~~~-~l~~~~~~~~~~~~~~~~~~~~~i~~~  117 (284)
T 3kk8_A           69 RLHDSIQE------------------------------ESFHYLVFDLVTGG-ELFEDIVAREFYSEADASHCIQQILES  117 (284)
T ss_dssp             CEEEEEEC------------------------------SSEEEEEECCCCSC-BHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             eEEEEEEc------------------------------CCEEEEEEecCCCC-CHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            99998543                              56689999999988 8877765    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPELF  358 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pelf  358 (447)
                      |+|||+ .||+||||||+|||++.++.                 +..+||+|||+++......    ......|++||++
T Consensus       118 l~~lH~-~~i~H~dikp~Nil~~~~~~-----------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~  179 (284)
T 3kk8_A          118 IAYCHS-NGIVHRNLKPENLLLASKAK-----------------GAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVL  179 (284)
T ss_dssp             HHHHHH-TTEECSCCCGGGEEESSSST-----------------TCCEEECCCTTCEECCSSCBCCCSCSCGGGCCHHHH
T ss_pred             HHHHHH-CCcCcCCCCHHHEEEecCCC-----------------CCcEEEeeceeeEEcccCccccCCCCCcCCcCchhh
Confidence            999999 99999999999999987651                 1259999999998765432    2233458999999


Q ss_pred             CCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc-----CHHH
Q 013230          359 SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN-----SAKE  431 (447)
Q Consensus       359 ~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d-----sa~e  431 (447)
                      .+.....+.|+|+ +|.+.++++.+..|+..................++.  ...+++++++||++||+.|     |++|
T Consensus       180 ~~~~~~~~~Di~s-lG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~  258 (284)
T 3kk8_A          180 KKDPYSKPVDIWA-CGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQ  258 (284)
T ss_dssp             TTCCBCTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred             cCCCCCcccchHH-HHHHHHHHHHCCCCCCCCchhHHHHHHHhccccCCchhhcccCHHHHHHHHHHcccChhhCCCHHH
Confidence            8877778889999 999999999999998766544444444433333332  3467899999999999999     9999


Q ss_pred             HHcCCCCCCC
Q 013230          432 AIFDPFFSDL  441 (447)
Q Consensus       432 lL~HPff~~~  441 (447)
                      +|+||||++.
T Consensus       259 ~l~h~~~~~~  268 (284)
T 3kk8_A          259 ALKVPWICNR  268 (284)
T ss_dssp             HTTSHHHHSC
T ss_pred             HhcCccccCC
Confidence            9999999865

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=6.7e-36  Score=299.30  Aligned_cols=257  Identities=18%  Similarity=0.187  Sum_probs=186.1

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|+++++||+|+||.||+|++      ||+|++...         .........|+.+++.+.+..       -.||+|+
T Consensus        36 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---------~~~~~~~~~e~~~l~~l~~~~-------~~h~~iv   99 (360)
T 3llt_A           36 AFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI---------KKYTRSAKIEADILKKIQNDD-------INNNNIV   99 (360)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC---------HHHHHHHHHHHHHHHHTCCCS-------TTGGGBC
T ss_pred             EEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc---------hhhhhhhHHHHHHHHHhcccC-------CCCCCee
Confidence            359999999999999999984      999998632         223456788999999997411       0145599


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVT  280 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil  280 (447)
                      ++++++..                              .+.+|+||||+ +| +|.+++.      +++..++.++.||+
T Consensus       100 ~~~~~~~~------------------------------~~~~~lv~e~~-~~-~L~~~~~~~~~~~~~~~~~~~i~~qi~  147 (360)
T 3llt_A          100 KYHGKFMY------------------------------YDHMCLIFEPL-GP-SLYEIITRNNYNGFHIEDIKLYCIEIL  147 (360)
T ss_dssp             CEEEEEEE------------------------------TTEEEEEECCC-CC-BHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred             cccceeeE------------------------------CCeeEEEEcCC-CC-CHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            99999765                              56799999999 66 9998875      88999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccc----cCcc-cccccCCCcEEEeeccceeecCCC--CEEEEecCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLL----DGKQ-MFVRTFGLSVTIIDFTLSRINTGE--DIFFLDLSQ  353 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~----~~~~-~~~~~~~~~vkL~DFGla~~~~~~--g~i~~~~~~  353 (447)
                      .||+|||+ +||+||||||+|||++...........    .++. ....+....+||+|||+|+.....  .......|+
T Consensus       148 ~aL~~LH~-~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~gt~~y~  226 (360)
T 3llt_A          148 KALNYLRK-MSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYR  226 (360)
T ss_dssp             HHHHHHHH-TTEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCCCSCCSCGGGC
T ss_pred             HHHHHHHH-CCeeeCCCCcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCCCcCccCccccc
Confidence            99999999 999999999999999863210000000    0000 000111237999999999875443  222344589


Q ss_pred             CCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCC--------------------------C
Q 013230          354 DPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTF--------------------------D  407 (447)
Q Consensus       354 ~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~--------------------------~  407 (447)
                      +||++.+...+.+.|||+ +|++.+++++|..||........+.........+                          +
T Consensus       227 aPE~~~~~~~~~~~Diws-lG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p  305 (360)
T 3llt_A          227 APEVILNLGWDVSSDMWS-FGCVLAELYTGSLLFRTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWP  305 (360)
T ss_dssp             CHHHHTTCCCCTTHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTT
T ss_pred             CcHHHcCCCCCCccchHH-HHHHHHHHHHCCCCCCCCcHHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCc
Confidence            999999888888889999 9999999999999986543222222111100000                          0


Q ss_pred             C------------------CccchHHHHHHHHHhcccc-----CHHHHHcCCCCC
Q 013230          408 R------------------SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFS  439 (447)
Q Consensus       408 ~------------------~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~  439 (447)
                      .                  ....++++++||++||++|     ||+|+|+||||+
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpta~elL~hp~f~  360 (360)
T 3llt_A          306 ENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLKHKFLE  360 (360)
T ss_dssp             TTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGC
T ss_pred             ccccchhhhhhhhhcccccccchHHHHHHHHHHHhcCChhhCCCHHHHhcCcccC
Confidence            0                  0012378889999999999     999999999996

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=3.5e-36  Score=308.92  Aligned_cols=248  Identities=21%  Similarity=0.219  Sum_probs=184.0

Q ss_pred             hhhccCCCcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCC
Q 013230          127 LFSKYSDPENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLN  200 (447)
Q Consensus       127 ~~~~y~~~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n  200 (447)
                      ..++|   ++.+.||+|+||.||+|.      .||+|++..................+.+|+.+|++++|        ||
T Consensus       133 ~~~~y---~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h--------pn  201 (419)
T 3i6u_A          133 LRDEY---IMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNH--------PC  201 (419)
T ss_dssp             HHTTE---EEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCC--------TT
T ss_pred             hhccE---EEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCC--------CC
Confidence            34555   999999999999999996      39999987643210011111222357899999999998        88


Q ss_pred             cccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHH
Q 013230          201 ACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLL  276 (447)
Q Consensus       201 ~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~  276 (447)
                          |+++++++.                               .+..|+||||+.+| +|.+++.    +++..++.++
T Consensus       202 ----iv~l~~~~~-------------------------------~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~i~  245 (419)
T 3i6u_A          202 ----IIKIKNFFD-------------------------------AEDYYIVLELMEGG-ELFDKVVGNKRLKEATCKLYF  245 (419)
T ss_dssp             ----BCCCCEEEE-------------------------------SSEEEEEEECCTTC-BGGGGTSSSCCCCHHHHHHHH
T ss_pred             ----EeeEEEEEe-------------------------------cCceEEEEEcCCCC-cHHHHHhccCCCCHHHHHHHH
Confidence                999999852                               34589999999988 9988875    8999999999


Q ss_pred             HHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecC
Q 013230          277 VQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLS  352 (447)
Q Consensus       277 ~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~  352 (447)
                      .||+.||+|||+ .||+||||||+|||++.++.                 ...+||+|||+|+......    ......|
T Consensus       246 ~qi~~~l~~LH~-~~ivHrDlkp~NIll~~~~~-----------------~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y  307 (419)
T 3i6u_A          246 YQMLLAVQYLHE-NGIIHRDLKPENVLLSSQEE-----------------DCLIKITDFGHSKILGETSLMRTLCGTPTY  307 (419)
T ss_dssp             HHHHHHHHHHHH-TTCCCSCCCGGGEEESSSSS-----------------SCCEEECCSSTTTSCC-----------CTT
T ss_pred             HHHHHHHHHHHH-CCccccCCChHhEEEecCCC-----------------cceEEEeecccceecCCCccccccCCCCCc
Confidence            999999999999 99999999999999986541                 1259999999998765432    2344569


Q ss_pred             CCCCCCCC---CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC----CccchHHHHHHHHHhcc
Q 013230          353 QDPELFSG---PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR----SSKDERDLRSLKKRLDK  425 (447)
Q Consensus       353 ~~pelf~g---~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~----~~~~s~~l~dLl~~mL~  425 (447)
                      ++||++.+   .....+.|||+ +|++.+++++|..||........+...+. ...++.    ...+++++++||++||+
T Consensus       308 ~aPE~~~~~~~~~~~~~~Diws-lG~il~~lltg~~pf~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~li~~~L~  385 (419)
T 3i6u_A          308 LAPEVLVSVGTAGYNRAVDCWS-LGVILFICLSGYPPFSEHRTQVSLKDQIT-SGKYNFIPEVWAEVSEKALDLVKKLLV  385 (419)
T ss_dssp             CCTTTTC----CTTHHHHHHHH-HHHHHHHHHHSSCSSCCCSSSCCHHHHHH-TTCCCCCHHHHTTSCHHHHHHHHHHSC
T ss_pred             cCceeeecCCCCCCCchhhhHh-HHHHHHHHHHCCCCCCCCcchHHHHHHHh-cCCCCCCchhhcccCHHHHHHHHHHcc
Confidence            99999864   33445669999 99999999999998864321111111211 111111    23578999999999999


Q ss_pred             cc-----CHHHHHcCCCCCCC
Q 013230          426 YN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       426 ~d-----sa~elL~HPff~~~  441 (447)
                      +|     |++|+|+||||++.
T Consensus       386 ~dP~~Rps~~e~l~hp~~~~~  406 (419)
T 3i6u_A          386 VDPKARFTTEEALRHPWLQDE  406 (419)
T ss_dssp             SSTTTSCCHHHHHHSGGGCCH
T ss_pred             CChhHCcCHHHHhCCcccCCh
Confidence            99     99999999999864

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=6.2e-36  Score=296.61  Aligned_cols=242  Identities=17%  Similarity=0.252  Sum_probs=176.3

Q ss_pred             hhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhcc-ccccCCCCCC
Q 013230          127 LFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN-HLRRNEGDTL  199 (447)
Q Consensus       127 ~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~  199 (447)
                      ++++|.-+...+.||+|+||.||+|++      ||+|++...           ......+|+.+++.+. |        |
T Consensus         6 f~~~y~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----------~~~~~~~e~~~l~~l~~h--------~   66 (325)
T 3kn6_A            6 FYQHYDLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKR-----------MEANTQKEITALKLCEGH--------P   66 (325)
T ss_dssp             HHHHEEECTTSCCSEEETTEEEEEEEETTTCCEEEEEEEEGG-----------GHHHHHHHHHHHHHTTTC--------T
T ss_pred             chhccccccCCCccccCCCeEEEEEEECCCCCEEEEEEEChh-----------hhhhHHHHHHHHHHhcCC--------C
Confidence            345552223347899999999999974      999998632           2356789999999997 5        7


Q ss_pred             CcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHH
Q 013230          200 NACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSL  275 (447)
Q Consensus       200 n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i  275 (447)
                      |    |+++++++..                              +...|+||||+.|| +|.+++.    +++..++.+
T Consensus        67 n----iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~i  111 (325)
T 3kn6_A           67 N----IVKLHEVFHD------------------------------QLHTFLVMELLNGG-ELFERIKKKKHFSETEASYI  111 (325)
T ss_dssp             T----BCCEEEEEEC------------------------------SSEEEEEECCCCSC-BHHHHHHHCSCCCHHHHHHH
T ss_pred             C----eeEEEEEEEc------------------------------CCEEEEEEEccCCC-cHHHHHHhcCCCCHHHHHHH
Confidence            7    9999999643                              56799999999988 9999886    899999999


Q ss_pred             HHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEe
Q 013230          276 LVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLD  350 (447)
Q Consensus       276 ~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~  350 (447)
                      +.||+.||+|||+ .||+||||||+|||++.++.                 ...+||+|||+|+.....+     .....
T Consensus       112 ~~qi~~~l~~LH~-~~ivH~Dlkp~NIll~~~~~-----------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~  173 (325)
T 3kn6_A          112 MRKLVSAVSHMHD-VGVVHRDLKPENLLFTDEND-----------------NLEIKIIDFGFARLKPPDNQPLKTPCFTL  173 (325)
T ss_dssp             HHHHHHHHHHHHH-TTEECCCCCGGGEEEEC---------------------CEEEECCCTTCEECCC------------
T ss_pred             HHHHHHHHHHHHH-CCCeecCCCHHHEEEecCCC-----------------cccEEEeccccceecCCCCCcccccCCCc
Confidence            9999999999999 99999999999999987641                 1269999999998764432     22345


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHH-------HHHHHHHHhhccCCCC--CccchHHHHHHHH
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLW-------LVYLVDMLLLKKTFDR--SSKDERDLRSLKK  421 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~-------~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~  421 (447)
                      .|++||++.+...+.+.|||+ +|.+.++++.|..|+.....       ......+......++.  ...+++++++||+
T Consensus       174 ~y~aPE~~~~~~~~~~~Diws-lG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  252 (325)
T 3kn6_A          174 HYAAPELLNQNGYDESCDLWS-LGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQ  252 (325)
T ss_dssp             ----------CCCCHHHHHHH-HHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCCCCSHHHHTSCHHHHHHHH
T ss_pred             CccCHHHhcCCCCCCccchHH-HHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCCCCcccccCCCHHHHHHHH
Confidence            589999999887888889999 99999999999999865321       1222333222222221  1357899999999


Q ss_pred             Hhcccc-----CHHHHHcCCCCCCC
Q 013230          422 RLDKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       422 ~mL~~d-----sa~elL~HPff~~~  441 (447)
                      +||..|     |++|+++||||++.
T Consensus       253 ~~L~~dP~~Rpt~~ell~h~w~~~~  277 (325)
T 3kn6_A          253 GLLTVDPNKRLKMSGLRYNEWLQDG  277 (325)
T ss_dssp             HHHCCCTTTCCCTTTSTTCGGGCTT
T ss_pred             HHCCCChhHCCCHHHHhcChhhccC
Confidence            999999     99999999999865

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=9.3e-36  Score=306.86  Aligned_cols=245  Identities=20%  Similarity=0.241  Sum_probs=182.6

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|++++.||+|+||.||+|++      ||+|++....      ........+.+|+.+|+.++|        +|    |+
T Consensus        27 ~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------~n----Iv   88 (432)
T 3n9x_A           27 NYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMF------EDLIDCKRILREITILNRLKS--------DY----II   88 (432)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTT------TSHHHHHHHHHHHHHHHHCCC--------TT----BC
T ss_pred             CEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchh------cChHHHHHHHHHHHHHHHcCC--------CC----cc
Confidence            349999999999999999963      9999987432      222345678999999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++...+                         ....+.+|+||||+. | +|.+++.    +++..++.++.||+.|
T Consensus        89 ~l~~~~~~~~-------------------------~~~~~~~~lv~e~~~-~-~L~~~~~~~~~l~~~~~~~i~~qil~a  141 (432)
T 3n9x_A           89 RLYDLIIPDD-------------------------LLKFDELYIVLEIAD-S-DLKKLFKTPIFLTEEHIKTILYNLLLG  141 (432)
T ss_dssp             CEEEECCCSC-------------------------TTTCCCEEEEEECCS-E-EHHHHHHSSCCCCHHHHHHHHHHHHHH
T ss_pred             eEEEEEecCC-------------------------CCcCCeEEEEEecCC-c-CHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            9999854311                         112356999999986 6 9999887    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----------------
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----------------  345 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----------------  345 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+|+......                 
T Consensus       142 L~~LH~-~givHrDlkp~NILl~~~~--------------------~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~  200 (432)
T 3n9x_A          142 ENFIHE-SGIIHRDLKPANCLLNQDC--------------------SVKVCDFGLARTINSEKDTNIVNDLEENEEPGPH  200 (432)
T ss_dssp             HHHHHH-TTEECCCCCGGGEEECTTC--------------------CEEECCCTTCEEC---------------------
T ss_pred             HHHHHH-CCCCCCCCCHHHeEECCCC--------------------CEEEccCCCccccccccccccccccccccccccc
Confidence            999999 9999999999999999987                    79999999998764321                 


Q ss_pred             ----------EEEEecCCCCCCC-CCCCCCchHHHHHhhccCCcccccCCCCCCh-----------h-------------
Q 013230          346 ----------IFFLDLSQDPELF-SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTN-----------V-------------  390 (447)
Q Consensus       346 ----------~i~~~~~~~pelf-~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~-----------~-------------  390 (447)
                                .+....|++||++ .+..+..+.|||+ +|++.++++++..|+..           .             
T Consensus       201 ~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwS-lG~il~ell~g~~p~~~~~~~~~p~f~g~~~~~~~~~~~~~~  279 (432)
T 3n9x_A          201 NKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWS-TGCIFAELLNMLQSHINDPTNRFPLFPGSSCFPLSPDRNSKK  279 (432)
T ss_dssp             ----------CCCCCTTCCHHHHTTCSCCCTHHHHHH-HHHHHHHHHTTCTTTCSSGGGCCCSCCCSCSCC---------
T ss_pred             ccchhccccCCCCCccccCHHHHhcCCCCCcccccch-HHHHHHHHHhcccccccccccccccCCCccccccCccccccc
Confidence                      1223448999986 4545667779999 99999999864322211           0             


Q ss_pred             ----HHHHHHHHHH--hhc------------------cCCCC---------CccchHHHHHHHHHhcccc-----CHHHH
Q 013230          391 ----LWLVYLVDML--LLK------------------KTFDR---------SSKDERDLRSLKKRLDKYN-----SAKEA  432 (447)
Q Consensus       391 ----~~~~~~~~~l--~~~------------------~~~~~---------~~~~s~~l~dLl~~mL~~d-----sa~el  432 (447)
                          .....+..++  ++.                  ..++.         ....+++++|||++||++|     ||+|+
T Consensus       280 ~~~~~~~~ql~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~  359 (432)
T 3n9x_A          280 VHEKSNRDQLNIIFNIIGTPTEDDLKNINKPEVIKYIKLFPHRKPINLKQKYPSISDDGINLLESMLKFNPNKRITIDQA  359 (432)
T ss_dssp             -CHHHHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred             ccccchHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHhcCCcccCCCHHHH
Confidence                0000110000  000                  00110         1347899999999999999     99999


Q ss_pred             HcCCCCCCCCCC
Q 013230          433 IFDPFFSDLIVD  444 (447)
Q Consensus       433 L~HPff~~~~~~  444 (447)
                      |+||||+++..+
T Consensus       360 L~Hp~f~~~~~~  371 (432)
T 3n9x_A          360 LDHPYLKDVRKK  371 (432)
T ss_dssp             HTCGGGTTTCCT
T ss_pred             hcChhhhhccCc
Confidence            999999987543

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=2.6e-36  Score=298.75  Aligned_cols=238  Identities=22%  Similarity=0.295  Sum_probs=182.4

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+++++||+|+||.||+|++      ||+|++.....       ......+.+|+.+++.++|        ||    |+
T Consensus         3 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-------~~~~~~~~~E~~~l~~l~h--------~~----iv   63 (324)
T 3mtl_A            3 TYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE-------EGAPCTAIREVSLLKDLKH--------AN----IV   63 (324)
T ss_dssp             SEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC-------------CCCCCCCHHHHSCCCC--------TT----BC
T ss_pred             ceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccc-------cccchhHHHHHHHHHhcCC--------CC----CC
Confidence            459999999999999999973      99999875422       1111234579999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      ++++++..                              ++.+|+||||+. | +|.+++.     +++..++.++.||+.
T Consensus        64 ~~~~~~~~------------------------------~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~~~~~~~~~qi~~  111 (324)
T 3mtl_A           64 TLHDIIHT------------------------------EKSLTLVFEYLD-K-DLKQYLDDCGNIINMHNVKLFLFQLLR  111 (324)
T ss_dssp             CEEEEEEC------------------------------SSCEEEEEECCS-E-EHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             eeeeEEee------------------------------CCEEEEEecccc-c-CHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            99999643                              566999999997 5 8888765     899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pe  356 (447)
                      ||+|||+ .||+||||||+|||++.++                    .+||+|||+|+.....     +......|++||
T Consensus       112 aL~~LH~-~~ivH~Dikp~NIl~~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE  170 (324)
T 3mtl_A          112 GLAYCHR-QKVLHRDLKPQNLLINERG--------------------ELKLADFGLARAKSIPTKTYDNEVVTLWYRPPD  170 (324)
T ss_dssp             HHHHHHH-TTEEESSCCGGGEEECTTC--------------------CEEECSSSEEECC------------CGGGCCHH
T ss_pred             HHHHHHH-CCccCCCcCHHHEEECCCC--------------------CEEEccCcccccccCCccccccccCcccccChh
Confidence            9999999 9999999999999999987                    7999999999865433     223345589999


Q ss_pred             CCCCC-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh--hcc---CC--------------C---------
Q 013230          357 LFSGP-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL--LKK---TF--------------D---------  407 (447)
Q Consensus       357 lf~g~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~--~~~---~~--------------~---------  407 (447)
                      ++.+. ....+.|||+ +|.+.++++.|..||........+..+..  +..   .+              +         
T Consensus       171 ~~~~~~~~~~~~Diws-lG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (324)
T 3mtl_A          171 ILLGSTDYSTQIDMWG-VGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLS  249 (324)
T ss_dssp             HHTTCCCCCTHHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHH
T ss_pred             hhcCCCCCCcHHHHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcchhhcccccccccchhhhh
Confidence            98773 4566779999 99999999999988865433332222211  000   00              0         


Q ss_pred             CCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          408 RSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       408 ~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                      ....+++++++||++||++|     ||+|+|+||||+++..
T Consensus       250 ~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~  290 (324)
T 3mtl_A          250 HAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLSLGE  290 (324)
T ss_dssp             HCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGCS
T ss_pred             hcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcChhhhhccc
Confidence            01246889999999999999     9999999999987643

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=9.4e-36  Score=298.31  Aligned_cols=238  Identities=18%  Similarity=0.181  Sum_probs=179.4

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||.||+|++      ||+|++....          ..+.+.+|+.+++.++|        ||    |++
T Consensus        55 y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~----------~~~~~~~E~~~l~~l~h--------~n----iv~  112 (349)
T 2w4o_A           55 FEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV----------DKKIVRTEIGVLLRLSH--------PN----IIK  112 (349)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC--------------------CHHHHHCCC--------TT----BCC
T ss_pred             EEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch----------hHHHHHHHHHHHHhCCC--------CC----Ccc
Confidence            49999999999999999973      9999987432          12456789999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++..                              .+.+|+||||+.+| +|.+++.    +++..++.++.||+.||
T Consensus       113 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~i~~qi~~~L  161 (349)
T 2w4o_A          113 LKEIFET------------------------------PTEISLVLELVTGG-ELFDRIVEKGYYSERDAADAVKQILEAV  161 (349)
T ss_dssp             EEEEEEC------------------------------SSEEEEEECCCCSC-BHHHHHTTCSSCCHHHHHHHHHHHHHHH
T ss_pred             eeeeEec------------------------------CCeEEEEEEeCCCC-CHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            9999643                              56799999999988 9988876    89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPELFS  359 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pelf~  359 (447)
                      .|||+ .||+||||||+|||++....                 +..+||+|||+++......    ......|++||++.
T Consensus       162 ~~LH~-~~ivH~Dikp~NIll~~~~~-----------------~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~  223 (349)
T 2w4o_A          162 AYLHE-NGIVHRDLKPENLLYATPAP-----------------DAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILR  223 (349)
T ss_dssp             HHHHH-TTCCCCCCCGGGEEESSSST-----------------TCCEEECCCC----------------CGGGSCHHHHT
T ss_pred             HHHHH-CCeEecCCCcccEEEecCCC-----------------CCCEEEccCccccccCcccccccccCCCCccCHHHhc
Confidence            99999 99999999999999986210                 0179999999998765432    22344589999999


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHH-HHHhhccCCC--CCccchHHHHHHHHHhcccc-----CHHH
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLV-DMLLLKKTFD--RSSKDERDLRSLKKRLDKYN-----SAKE  431 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~-~~l~~~~~~~--~~~~~s~~l~dLl~~mL~~d-----sa~e  431 (447)
                      +.....+.|||+ +|++.++++.|..|+.......... .+......++  ....++.++++||++||..|     |+.|
T Consensus       224 ~~~~~~~~Diws-lG~il~ell~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e  302 (349)
T 2w4o_A          224 GCAYGPEVDMWS-VGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQ  302 (349)
T ss_dssp             TCCCCTHHHHHH-HHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHH
T ss_pred             CCCCCcccchHH-HHHHHHHHHhCCCCCCCCcccHHHHHHHHhCCCccCCchhhhCCHHHHHHHHHHccCChhhCcCHHH
Confidence            887888889999 9999999999999986543333222 2222222222  23568899999999999999     9999


Q ss_pred             HHcCCCCCCCCC
Q 013230          432 AIFDPFFSDLIV  443 (447)
Q Consensus       432 lL~HPff~~~~~  443 (447)
                      +|+||||++...
T Consensus       303 ~l~hp~~~~~~~  314 (349)
T 2w4o_A          303 ALQHPWVTGKAA  314 (349)
T ss_dssp             HHHSTTTTSTTC
T ss_pred             HhcCcccCCCcc
Confidence            999999987643

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=5.3e-36  Score=288.93  Aligned_cols=237  Identities=21%  Similarity=0.256  Sum_probs=174.8

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||.||+|++      ||+|++.....     ......+.+.+|+.+++.++|        ||    |++
T Consensus        13 y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-----~~~~~~~~~~~e~~~l~~l~h--------~~----i~~   75 (278)
T 3cok_A           13 FKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAM-----YKAGMVQRVQNEVKIHCQLKH--------PS----ILE   75 (278)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHH-----HHTTCHHHHHHHHHHHTTBCC--------TT----BCC
T ss_pred             ceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhh-----hhhhHHHHHHHHHHHHHhCCC--------CC----eEe
Confidence            49999999999999999973      99999874321     122344678999999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++..                              .+..|+||||+.+| +|.+++.     +++..++.++.||+.|
T Consensus        76 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~qi~~~  124 (278)
T 3cok_A           76 LYNYFED------------------------------SNYVYLVLEMCHNG-EMNRYLKNRVKPFSENEARHFMHQIITG  124 (278)
T ss_dssp             EEEEEEC------------------------------SSEEEEEEECCTTE-EHHHHHHTCSSCCCHHHHHHHHHHHHHH
T ss_pred             EEEEEcc------------------------------CCeEEEEEecCCCC-cHHHHHhhccCCCCHHHHHHHHHHHHHH
Confidence            9998543                              56799999999988 9998875     8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pel  357 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+++......     ......|++||.
T Consensus       125 l~~lH~-~~i~H~dl~p~Nili~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  183 (278)
T 3cok_A          125 MLYLHS-HGILHRDLTLSNLLLTRNM--------------------NIKIADFGLATQLKMPHEKHYTLCGTPNYISPEI  183 (278)
T ss_dssp             HHHHHH-TTEECSSCCGGGEEECTTC--------------------CEEECCCTTCEECC--------------------
T ss_pred             HHHHHH-CCeecCCCCHHHEEEcCCC--------------------CEEEEeecceeeccCCCCcceeccCCCCcCCcch
Confidence            999999 9999999999999999887                    79999999998764321     223345899999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHH
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEA  432 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~el  432 (447)
                      +.+.....+.|+|+ +|.+.++++.+..|+........+.....  ..+..+...+.++++||.+||..|     |++++
T Consensus       184 ~~~~~~~~~~Di~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~  260 (278)
T 3cok_A          184 ATRSAHGLESDVWS-LGCMFYTLLIGRPPFDTDTVKNTLNKVVL--ADYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSV  260 (278)
T ss_dssp             --------CTHHHH-HHHHHHHHHHSSCSSCCCSCC-----CCS--SCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred             hcCCCCCchhhHHH-HHHHHHHHHhCCCCCCChhHHHHHHHHhh--cccCCccccCHHHHHHHHHHcccCHhhCCCHHHH
Confidence            98877777779999 99999999999988865433222222221  223345568999999999999999     99999


Q ss_pred             HcCCCCCCCC
Q 013230          433 IFDPFFSDLI  442 (447)
Q Consensus       433 L~HPff~~~~  442 (447)
                      ++||||++..
T Consensus       261 l~h~~~~~~~  270 (278)
T 3cok_A          261 LDHPFMSRNS  270 (278)
T ss_dssp             TTSTTTC---
T ss_pred             hcCccccCCC
Confidence            9999998653

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=6.5e-36  Score=313.84  Aligned_cols=251  Identities=23%  Similarity=0.294  Sum_probs=194.9

Q ss_pred             hhhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCccc-----ccccccchHHHHHHHHHHHhccccccC
Q 013230          126 DLFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKV-----NGEAQKKSEELLEEVVLSWTLNHLRRN  194 (447)
Q Consensus       126 ~~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~-----~~~~~~~~~~~~~Ei~il~~L~h~~~~  194 (447)
                      .+.++|   +++++||+|+||.||+|++      ||+|++........     ........+.+.+|+.+++.|+|    
T Consensus        33 ~i~~~Y---~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h----  105 (504)
T 3q5i_A           33 KIGESY---FKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDH----  105 (504)
T ss_dssp             CGGGTE---EEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCC----
T ss_pred             Ccccce---EEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCC----
Confidence            344555   9999999999999999973      99999875432100     00111345778999999999998    


Q ss_pred             CCCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHH
Q 013230          195 EGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNIN  270 (447)
Q Consensus       195 ~~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~  270 (447)
                          ||    |+++++++..                              ...+|+|||||.|| +|.+++.    +++.
T Consensus       106 ----pn----iv~~~~~~~~------------------------------~~~~~lv~e~~~gg-~L~~~l~~~~~~~~~  146 (504)
T 3q5i_A          106 ----PN----IIKLFDVFED------------------------------KKYFYLVTEFYEGG-ELFEQIINRHKFDEC  146 (504)
T ss_dssp             ----TT----BCCEEEEEEC------------------------------SSEEEEEEECCTTC-BHHHHHHHHSCCCHH
T ss_pred             ----CC----CCeEEEEEEc------------------------------CCEEEEEEecCCCC-cHHHHHHHcCCCCHH
Confidence                88    9999999643                              56799999999988 8888775    9999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CE
Q 013230          271 EARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DI  346 (447)
Q Consensus       271 ~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~  346 (447)
                      .++.++.||+.||+|||+ .||+||||||+|||++.++.                 ...+||+|||+|+.....    ..
T Consensus       147 ~~~~i~~qi~~~l~~lH~-~~ivH~Dlkp~Nil~~~~~~-----------------~~~~kl~Dfg~a~~~~~~~~~~~~  208 (504)
T 3q5i_A          147 DAANIMKQILSGICYLHK-HNIVHRDIKPENILLENKNS-----------------LLNIKIVDFGLSSFFSKDYKLRDR  208 (504)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TTEECSCCSGGGEEESSTTC-----------------CSSEEECCCTTCEECCTTSCBCCC
T ss_pred             HHHHHHHHHHHHHHHHHH-CCeEeCCCcHHHEEEecCCC-----------------CccEEEEECCCCEEcCCCCccccc
Confidence            999999999999999999 99999999999999998752                 126999999999876543    12


Q ss_pred             EEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhc
Q 013230          347 FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLD  424 (447)
Q Consensus       347 i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL  424 (447)
                      .....|++||++.+ .+..+.|||+ +|++.++++.|..|+........+..+......++.  ...+++++++||++||
T Consensus       209 ~gt~~y~aPE~~~~-~~~~~~Diws-lG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L  286 (504)
T 3q5i_A          209 LGTAYYIAPEVLKK-KYNEKCDVWS-CGVIMYILLCGYPPFGGQNDQDIIKKVEKGKYYFDFNDWKNISDEAKELIKLML  286 (504)
T ss_dssp             CSCTTTCCHHHHTT-CBCTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHT
T ss_pred             cCCcCCCCHHHhcc-CCCchHHHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCccccCCCCHHHHHHHHHHc
Confidence            23455899999886 4677789999 999999999999999776555544444433222222  2457899999999999


Q ss_pred             ccc-----CHHHHHcCCCCCCCC
Q 013230          425 KYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       425 ~~d-----sa~elL~HPff~~~~  442 (447)
                      ++|     ||+|+|+||||+...
T Consensus       287 ~~dp~~R~t~~e~l~h~~~~~~~  309 (504)
T 3q5i_A          287 TYDYNKRCTAEEALNSRWIKKYA  309 (504)
T ss_dssp             CSSTTTSCCHHHHHTSHHHHHTC
T ss_pred             CCChhHCCCHHHHhcCHhhhhch
Confidence            999     999999999997654

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.4e-36  Score=297.89  Aligned_cols=241  Identities=17%  Similarity=0.196  Sum_probs=193.9

Q ss_pred             hhhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCC
Q 013230          126 DLFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTL  199 (447)
Q Consensus       126 ~~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~  199 (447)
                      +..++|   ++++.||+|+||.||+|++      ||+|++..................+.+|+.+++.++|        |
T Consensus        21 ~~~~~y---~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h--------~   89 (335)
T 3dls_A           21 EYSQKY---STMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEH--------A   89 (335)
T ss_dssp             HHHHHE---EEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCC--------T
T ss_pred             ccccce---EEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCC--------C
Confidence            445666   9999999999999999963      9999998654211110111123456789999999988        8


Q ss_pred             CcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHH
Q 013230          200 NACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSL  275 (447)
Q Consensus       200 n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i  275 (447)
                      |    |+++++++..                              .+.+|+||||+.+|.+|.+++.    +++..++.+
T Consensus        90 ~----Iv~~~~~~~~------------------------------~~~~~lv~e~~~~g~~l~~~~~~~~~l~~~~~~~i  135 (335)
T 3dls_A           90 N----IIKVLDIFEN------------------------------QGFFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYI  135 (335)
T ss_dssp             T----BCCEEEEEEC------------------------------SSEEEEEEECCTTSCBHHHHHHTCCCCCHHHHHHH
T ss_pred             C----EeeEEEEEee------------------------------CCEEEEEEEeCCCCccHHHHHHhcCCCCHHHHHHH
Confidence            8    9999999643                              5679999999987779998886    899999999


Q ss_pred             HHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE----EEEec
Q 013230          276 LVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI----FFLDL  351 (447)
Q Consensus       276 ~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~----i~~~~  351 (447)
                      +.||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+|+.......    .....
T Consensus       136 ~~qi~~~L~~LH~-~~ivH~Dlkp~NIll~~~~--------------------~~kL~Dfg~a~~~~~~~~~~~~~gt~~  194 (335)
T 3dls_A          136 FRQLVSAVGYLRL-KDIIHRDIKDENIVIAEDF--------------------TIKLIDFGSAAYLERGKLFYTFCGTIE  194 (335)
T ss_dssp             HHHHHHHHHHHHH-TTEECSCCSGGGEEECTTS--------------------CEEECCCTTCEECCTTCCBCEECSCGG
T ss_pred             HHHHHHHHHHHHh-CCeEEeccCHHHEEEcCCC--------------------cEEEeecccceECCCCCceeccCCCcc
Confidence            9999999999999 9999999999999999887                    799999999987655422    22345


Q ss_pred             CCCCCCCCCCCC-CchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc---
Q 013230          352 SQDPELFSGPKG-DKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN---  427 (447)
Q Consensus       352 ~~~pelf~g~~~-~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d---  427 (447)
                      |++||.+.+... ..+.|||+ +|.+.++++.+..|+.....      ..  ......+..+++++++||++||..|   
T Consensus       195 y~aPE~~~~~~~~~~~~Diws-lG~il~el~~g~~pf~~~~~------~~--~~~~~~~~~~~~~l~~li~~~L~~dP~~  265 (335)
T 3dls_A          195 YCAPEVLMGNPYRGPELEMWS-LGVTLYTLVFEENPFCELEE------TV--EAAIHPPYLVSKELMSLVSGLLQPVPER  265 (335)
T ss_dssp             GCCHHHHTTCCBCSHHHHHHH-HHHHHHHHHHSSCSCSSGGG------GT--TTCCCCSSCCCHHHHHHHHHHTCSSGGG
T ss_pred             ccChhhhcCCCCCCCcccchh-HHHHHHHHHhCCCchhhHHH------HH--hhccCCCcccCHHHHHHHHHHccCChhh
Confidence            899999988665 45669999 99999999999999876311      11  2233445568999999999999999   


Q ss_pred             --CHHHHHcCCCCCCC
Q 013230          428 --SAKEAIFDPFFSDL  441 (447)
Q Consensus       428 --sa~elL~HPff~~~  441 (447)
                        |++|+++||||++.
T Consensus       266 Rps~~ell~hp~~~~~  281 (335)
T 3dls_A          266 RTTLEKLVTDPWVTQP  281 (335)
T ss_dssp             SCCHHHHHHCTTTTCC
T ss_pred             CcCHHHHhcCccccCC
Confidence              99999999999864

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=1.5e-35  Score=302.48  Aligned_cols=242  Identities=18%  Similarity=0.202  Sum_probs=184.8

Q ss_pred             hhhhccCCCcce-EEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCC
Q 013230          126 DLFSKYSDPENI-VKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGD  197 (447)
Q Consensus       126 ~~~~~y~~~~~~-~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~  197 (447)
                      ..++.|   .++ +.||+|+||+||+|++      ||+|++...             ..+.+|+.++.++ +|       
T Consensus        58 ~~~~~y---~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-------------~~~~~E~~~~~~~~~h-------  114 (400)
T 1nxk_A           58 AIIDDY---KVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-------------PKARREVELHWRASQC-------  114 (400)
T ss_dssp             CGGGTE---EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-------------HHHHHHHHHHHHHTTS-------
T ss_pred             cccccc---eeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-------------hhHHHHHHHHHHhcCC-------
Confidence            344555   666 6899999999999974      999998621             3467899887554 44       


Q ss_pred             CCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHH
Q 013230          198 TLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINE  271 (447)
Q Consensus       198 ~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~  271 (447)
                       ||    |++++++|....                          .....+|||||||.|| +|.+++.      +++..
T Consensus       115 -p~----iv~l~~~~~~~~--------------------------~~~~~~~lv~E~~~gg-~L~~~l~~~~~~~l~~~~  162 (400)
T 1nxk_A          115 -PH----IVRIVDVYENLY--------------------------AGRKCLLIVMECLDGG-ELFSRIQDRGDQAFTERE  162 (400)
T ss_dssp             -TT----BCCEEEEEEEEE--------------------------TTEEEEEEEEECCCSE-EHHHHHHCC---CCBHHH
T ss_pred             -CC----cceEeEEEeecc--------------------------cCCcEEEEEEEeCCCC-cHHHHHHHhCCCCCCHHH
Confidence             66    999999865311                          1135689999999988 9998875      89999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEE
Q 013230          272 ARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIF  347 (447)
Q Consensus       272 ~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i  347 (447)
                      ++.++.||+.||.|||+ +||+||||||+|||++..+.                 +..+||+|||+|+.....    ...
T Consensus       163 ~~~i~~qi~~aL~~LH~-~~ivHrDlkp~Nill~~~~~-----------------~~~~kl~DFG~a~~~~~~~~~~~~~  224 (400)
T 1nxk_A          163 ASEIMKSIGEAIQYLHS-INIAHRDVKPENLLYTSKRP-----------------NAILKLTDFGFAKETTSHNSLTTPC  224 (400)
T ss_dssp             HHHHHHHHHHHHHHHHH-TTEECCCCCGGGEEESSSST-----------------TCCEEECCCTTCEECC---------
T ss_pred             HHHHHHHHHHHHHHHHH-CCccccCcCcceEEEecCCC-----------------CccEEEEecccccccCCCCccccCC
Confidence            99999999999999999 99999999999999998420                 017999999999876543    223


Q ss_pred             EEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHH----HHHHHHHhhccCCCC--CccchHHHHHHHH
Q 013230          348 FLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWL----VYLVDMLLLKKTFDR--SSKDERDLRSLKK  421 (447)
Q Consensus       348 ~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~----~~~~~~l~~~~~~~~--~~~~s~~l~dLl~  421 (447)
                      ....|++||++.+..++...|||+ +|++.++++.|..||......    .....+......++.  ...+++++++||+
T Consensus       225 gt~~y~aPE~~~~~~~~~~~Diws-lG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  303 (400)
T 1nxk_A          225 YTPYYVAPEVLGPEKYDKSCDMWS-LGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIR  303 (400)
T ss_dssp             --CTTCCGGGSCCCCSSSHHHHHH-HHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCCCCCTTTTTTSCHHHHHHHH
T ss_pred             CCCCccCHhhcCCCCCCCcccHHH-HHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCcccCCCcccccCCHHHHHHHH
Confidence            455699999998888888889999 999999999999888643110    011222222223332  2468999999999


Q ss_pred             Hhcccc-----CHHHHHcCCCCCCC
Q 013230          422 RLDKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       422 ~mL~~d-----sa~elL~HPff~~~  441 (447)
                      +||..|     |++|+|+||||.+.
T Consensus       304 ~~L~~dP~~Rpt~~eil~hp~~~~~  328 (400)
T 1nxk_A          304 NLLKTEPTQRMTITEFMNHPWIMQS  328 (400)
T ss_dssp             TTSCSSGGGSCCHHHHHHSHHHHTT
T ss_pred             HHCCCChhHCcCHHHHhcCccccCC
Confidence            999999     99999999999753

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=3e-36  Score=314.54  Aligned_cols=244  Identities=24%  Similarity=0.313  Sum_probs=197.0

Q ss_pred             hhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCc
Q 013230          128 FSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA  201 (447)
Q Consensus       128 ~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~  201 (447)
                      .++|   ++.+.||+|+||.||+|++      ||+|++.....     ......+.+.+|+.+++.++|        || 
T Consensus        25 ~~~y---~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~-----~~~~~~~~~~~E~~~l~~l~h--------pn-   87 (484)
T 3nyv_A           25 SDRY---KGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQV-----KQKTDKESLLREVQLLKQLDH--------PN-   87 (484)
T ss_dssp             HHHE---EEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CBSSCHHHHHHHHHHHTTCCC--------TT-
T ss_pred             cCce---EEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhc-----ccchHHHHHHHHHHHHHhCCC--------CC-
Confidence            4556   8999999999999999974      99999876532     223345778999999999988        88 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHH
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLV  277 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~  277 (447)
                         |+++++++..                              .+.+|+|||||.|| +|.+++.    +++..++.++.
T Consensus        88 ---iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~i~~  133 (484)
T 3nyv_A           88 ---IMKLYEFFED------------------------------KGYFYLVGEVYTGG-ELFDEIISRKRFSEVDAARIIR  133 (484)
T ss_dssp             ---BCCEEEEEEC------------------------------SSEEEEEECCCCSC-BHHHHHHTCSCCBHHHHHHHHH
T ss_pred             ---CCcEEEEEEe------------------------------CCEEEEEEecCCCC-CHHHHHHhcCCCCHHHHHHHHH
Confidence               9999999643                              56799999999988 8888775    89999999999


Q ss_pred             HHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE----EEEecCC
Q 013230          278 QVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI----FFLDLSQ  353 (447)
Q Consensus       278 Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~----i~~~~~~  353 (447)
                      ||+.||+|||+ .||+||||||+|||++....                 ...+||+|||+|+.......    +....|+
T Consensus       134 qi~~~l~~lH~-~~ivH~Dlkp~Nil~~~~~~-----------------~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~  195 (484)
T 3nyv_A          134 QVLSGITYMHK-NKIVHRDLKPENLLLESKSK-----------------DANIRIIDFGLSTHFEASKKMKDKIGTAYYI  195 (484)
T ss_dssp             HHHHHHHHHHH-TTCCCSCCCGGGEEESSSST-----------------TCCEEECCTTHHHHBCCCCSHHHHTTGGGTC
T ss_pred             HHHHHHHHHHH-CCeeeCCCCHHHEEEecCCC-----------------CCcEEEEeeeeeEEcccccccccCCCCcccc
Confidence            99999999999 99999999999999964321                 11799999999987654421    2234589


Q ss_pred             CCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCC--CCccchHHHHHHHHHhcccc----
Q 013230          354 DPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFD--RSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       354 ~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~--~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      +||++.+ .++.+.|||+ +|++.++++.|..|+........+..+......++  ....+++++++||++||++|    
T Consensus       196 aPE~~~~-~~~~~~Diws-lG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R  273 (484)
T 3nyv_A          196 APEVLHG-TYDEKCDVWS-TGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMR  273 (484)
T ss_dssp             CHHHHHT-CCCTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGGGSCHHHHHHHHHHTCSSGGGS
T ss_pred             CceeecC-CCCCcceeHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHCCCChhHC
Confidence            9999988 5677789999 99999999999999976655444444443333333  23568999999999999999    


Q ss_pred             -CHHHHHcCCCCCCCC
Q 013230          428 -SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 -sa~elL~HPff~~~~  442 (447)
                       ||.|+|+||||+...
T Consensus       274 ~s~~e~l~h~~~~~~~  289 (484)
T 3nyv_A          274 ISARDALDHEWIQTYT  289 (484)
T ss_dssp             CCHHHHHTSHHHHHHT
T ss_pred             cCHHHHhhChhhcccc
Confidence             999999999997543

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=1.2e-35  Score=299.69  Aligned_cols=245  Identities=19%  Similarity=0.235  Sum_probs=184.9

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|++++.||+|+||.||+|++      ||+|++....      ........+.+|+.+++.++|        ||    |+
T Consensus        26 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------pn----iv   87 (371)
T 2xrw_A           26 RYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPF------QNQTHAKRAYRELVLMKCVNH--------KN----II   87 (371)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTT------SSHHHHHHHHHHHHHHHHCCC--------TT----BC
T ss_pred             heeEeeeeEecCCEEEEEEEECCCCceEEEEEecccc------CChHHHHHHHHHHHHHHhcCC--------CC----cc
Confidence            349999999999999999963      9999987542      223345678899999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--CCHHHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--l~~~~~~~i~~Qil~gL~  284 (447)
                      ++++++...+.                        ......+|+||||+. | +|.+++.  +++..++.++.||+.||+
T Consensus        88 ~~~~~~~~~~~------------------------~~~~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~~~i~~qi~~al~  141 (371)
T 2xrw_A           88 GLLNVFTPQKS------------------------LEEFQDVYIVMELMD-A-NLCQVIQMELDHERMSYLLYQMLCGIK  141 (371)
T ss_dssp             CEEEEECSCCS------------------------TTTCCEEEEEEECCS-E-EHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred             ceEEeeccccc------------------------cccccceEEEEEcCC-C-CHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence            99999643221                        112346899999997 4 6777776  899999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDPELFSG  360 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~pelf~g  360 (447)
                      |||+ .||+||||||+|||++.++                    .+||+|||+|+.....    .......|++||++.+
T Consensus       142 ~lH~-~~ivH~Dlkp~NIl~~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~  200 (371)
T 2xrw_A          142 HLHS-AGIIHRDLKPSNIVVKSDC--------------------TLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILG  200 (371)
T ss_dssp             HHHH-TTCCCSCCCGGGEEECTTS--------------------CEEECCCCC----------------CTTCCHHHHTT
T ss_pred             HHHH-CCeecccCCHHHEEEcCCC--------------------CEEEEEeecccccccccccCCceecCCccCHHHhcC
Confidence            9999 9999999999999999887                    7999999999876543    2234456999999998


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh----------------------hccC-------------
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL----------------------LKKT-------------  405 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~----------------------~~~~-------------  405 (447)
                      ...+.+.|||+ +|++.++++.|..||........+..++.                      ....             
T Consensus       201 ~~~~~~~Diws-lG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (371)
T 2xrw_A          201 MGYKENVDIWS-VGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDV  279 (371)
T ss_dssp             CCCCTTHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSCGG
T ss_pred             CCCCchHhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHhhCccccccchhhhcccc
Confidence            77788889999 99999999999988865433222222211                      0000             


Q ss_pred             -CCCC----ccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          406 -FDRS----SKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       406 -~~~~----~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                       ++..    ...+.++++||++||++|     ||+|+|+||||+....
T Consensus       280 ~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~~~  327 (371)
T 2xrw_A          280 LFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVWYD  327 (371)
T ss_dssp             GSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHSHHHHTTCC
T ss_pred             cCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCCcchhhhcC
Confidence             1110    113788999999999999     9999999999986543

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=5.9e-36  Score=288.42  Aligned_cols=241  Identities=20%  Similarity=0.240  Sum_probs=192.5

Q ss_pred             hhhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCC
Q 013230          126 DLFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTL  199 (447)
Q Consensus       126 ~~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~  199 (447)
                      ++.++|   ++.+.||+|+||.||+|.+      +|+|++....        ....+.+.+|+.+++.++|        |
T Consensus         6 ~~~~~y---~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~--------~~~~~~~~~E~~~l~~l~h--------~   66 (277)
T 3f3z_A            6 DINQYY---TLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYF--------VEDVDRFKQEIEIMKSLDH--------P   66 (277)
T ss_dssp             CHHHHE---EEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGG--------CSCHHHHHHHHHHHHTCCC--------T
T ss_pred             hhhhhE---EeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhc--------cchHHHHHHHHHHHHhCCC--------C
Confidence            345566   9999999999999999973      8999887432        1234678999999999988        8


Q ss_pred             CcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHH
Q 013230          200 NACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSL  275 (447)
Q Consensus       200 n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i  275 (447)
                      |    |+++++++..                              .+..|+||||+.+| +|.+++.    +++..++.+
T Consensus        67 ~----i~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~i  111 (277)
T 3f3z_A           67 N----IIRLYETFED------------------------------NTDIYLVMELCTGG-ELFERVVHKRVFRESDAARI  111 (277)
T ss_dssp             T----BCCEEEEEEC------------------------------SSEEEEEEECCCSC-BHHHHHHHHCSCCHHHHHHH
T ss_pred             C----EeeEEEEEec------------------------------CCeEEEEEeccCCC-cHHHHHHHcCCCCHHHHHHH
Confidence            8    9999998643                              56699999999987 9988775    899999999


Q ss_pred             HHHHHHHHHHHHHhCCeeeccCCCCCEEE---ecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEE
Q 013230          276 LVQVTAGLAVAEAAYEFEHRDLHWGNVLL---SRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFF  348 (447)
Q Consensus       276 ~~Qil~gL~ylH~~~~iiHrDLKpeNILl---~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~  348 (447)
                      +.||+.||+|||+ .||+||||||+|||+   +.++                    .+||+|||+++......    ...
T Consensus       112 ~~~i~~~l~~lH~-~~i~H~dlkp~Nil~~~~~~~~--------------------~~~l~Dfg~~~~~~~~~~~~~~~~  170 (277)
T 3f3z_A          112 MKDVLSAVAYCHK-LNVAHRDLKPENFLFLTDSPDS--------------------PLKLIDFGLAARFKPGKMMRTKVG  170 (277)
T ss_dssp             HHHHHHHHHHHHH-TTEECCCCSGGGEEESSSSTTC--------------------CEEECCCTTCEECCTTSCBCCCCS
T ss_pred             HHHHHHHHHHHHH-CCccCCCCCHHHEEEecCCCCC--------------------cEEEEecccceeccCccchhccCC
Confidence            9999999999999 999999999999999   4444                    79999999998755432    123


Q ss_pred             EecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhccc
Q 013230          349 LDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKY  426 (447)
Q Consensus       349 ~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~  426 (447)
                      ...|++||.+.+. ...+.|+|+ +|.+.++++++..|+..................++.  ...+++++++||++||..
T Consensus       171 t~~y~aPE~~~~~-~~~~~Di~s-lG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  248 (277)
T 3f3z_A          171 TPYYVSPQVLEGL-YGPECDEWS-AGVMMYVLLCGYPPFSAPTDSEVMLKIREGTFTFPEKDWLNVSPQAESLIRRLLTK  248 (277)
T ss_dssp             CTTTCCHHHHTTC-BCTTHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCS
T ss_pred             CCCccChHHhccc-CCchhhehh-HHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCchhhhcCCHHHHHHHHHHccC
Confidence            3448899998874 667779999 999999999999998765444444444322222221  125789999999999999


Q ss_pred             c-----CHHHHHcCCCCCCCCC
Q 013230          427 N-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       427 d-----sa~elL~HPff~~~~~  443 (447)
                      |     |+.|+|+||||++...
T Consensus       249 dp~~R~s~~~~l~h~~~~~~~~  270 (277)
T 3f3z_A          249 SPKQRITSLQALEHEWFEKQLS  270 (277)
T ss_dssp             STTTSCCHHHHTTSHHHHHHHC
T ss_pred             ChhhCcCHHHHhcCHHHhcccc
Confidence            9     9999999999986543

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=4.4e-35  Score=282.36  Aligned_cols=255  Identities=16%  Similarity=0.107  Sum_probs=185.0

Q ss_pred             hhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCC
Q 013230          128 FSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLN  200 (447)
Q Consensus       128 ~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n  200 (447)
                      .++|   ++++.||+|+||.||+|++      ||+|++.....      .......+.+|+.++..+ +|        ||
T Consensus        10 ~~~y---~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~------~~~~~~~~~~e~~~~~~l~~h--------~~   72 (289)
T 1x8b_A           10 TTEF---HELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLA------GSVDEQNALREVYAHAVLGQH--------SH   72 (289)
T ss_dssp             HHHE---EEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCT------TSHHHHHHHHHHHHHHHSCSC--------TT
T ss_pred             cchh---hhhhhhcCCCceEEEEEEEcCCCceEEEEEeccccc------ccHHHHHHHHHHHHHHHhCCC--------CC
Confidence            3455   9999999999999999973      99999875422      222346788999999998 66        77


Q ss_pred             cccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHH
Q 013230          201 ACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEA  272 (447)
Q Consensus       201 ~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~  272 (447)
                          |+++++++..                              ++.+|+||||+.+| +|.+++.        +++..+
T Consensus        73 ----iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~  117 (289)
T 1x8b_A           73 ----VVRYFSAWAE------------------------------DDHMLIQNEYCNGG-SLADAISENYRIMSYFKEAEL  117 (289)
T ss_dssp             ----BCCEEEEEEE------------------------------TTEEEEEEECCTTC-BHHHHHHHHHHHTCCCCHHHH
T ss_pred             ----eeeeeeeeec------------------------------CCeEEEEEEecCCC-cHHHHHHhhcccccCCCHHHH
Confidence                9999999654                              56799999999988 9999875        799999


Q ss_pred             HHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-EEEec
Q 013230          273 RSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-FFLDL  351 (447)
Q Consensus       273 ~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-i~~~~  351 (447)
                      +.++.||+.||+|||+ +||+||||||+|||++.++....... .............+||+|||+++....... .....
T Consensus       118 ~~i~~qi~~al~~lH~-~~ivH~Dikp~NIl~~~~~~~~~~~~-~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~gt~~  195 (289)
T 1x8b_A          118 KDLLLQVGRGLRYIHS-MSLVHMDIKPSNIFISRTSIPNAASE-EGDEDDWASNKVMFKIGDLGHVTRISSPQVEEGDSR  195 (289)
T ss_dssp             HHHHHHHHHHHHHHHH-TTEECSCCSGGGEEEC---------------------CCCEEECCCTTCEETTCSCCCCCCGG
T ss_pred             HHHHHHHHHHHHHHHh-CCEeecCCCHHHEEEcCCCCCccccc-ccccccccCCceEEEEcccccccccCCccccCCCcc
Confidence            9999999999999999 99999999999999986641000000 000000011223799999999987655422 23445


Q ss_pred             CCCCCCCCCCCCC-chHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc---
Q 013230          352 SQDPELFSGPKGD-KQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN---  427 (447)
Q Consensus       352 ~~~pelf~g~~~~-~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d---  427 (447)
                      |++||.+.+.... .+.|||+ +|.+.++++.+..++.......    .+........+..+++++++||++||..|   
T Consensus       196 y~aPE~~~~~~~~~~~~Di~s-lG~il~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~  270 (289)
T 1x8b_A          196 FLANEVLQENYTHLPKADIFA-LALTVVCAAGAEPLPRNGDQWH----EIRQGRLPRIPQVLSQEFTELLKVMIHPDPER  270 (289)
T ss_dssp             GCCHHHHTTCCTTHHHHHHHH-HHHHHHHHTTCCCCCSSSHHHH----HHHTTCCCCCSSCCCHHHHHHHHHHTCSSGGG
T ss_pred             ccChhHhcCCCCCCchhhHHH-HHHHHHHHhcCCCCCcchhHHH----HHHcCCCCCCCcccCHHHHHHHHHHhCCCccc
Confidence            8999999875333 4669999 8999999998876554432211    11112222334678999999999999999   


Q ss_pred             --CHHHHHcCCCCCCC
Q 013230          428 --SAKEAIFDPFFSDL  441 (447)
Q Consensus       428 --sa~elL~HPff~~~  441 (447)
                        |+.|+++||||++.
T Consensus       271 Rps~~~ll~h~~~~~~  286 (289)
T 1x8b_A          271 RPSAMALVKHSVLLSA  286 (289)
T ss_dssp             SCCHHHHHTCTTC---
T ss_pred             CCCHHHHhhChHhhhh
Confidence              99999999999864

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=1.8e-35  Score=296.39  Aligned_cols=238  Identities=18%  Similarity=0.210  Sum_probs=191.6

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+.++.||+|+||.||+|++      ||+|++.....     ......+.+.+|+.+++.++|        ||    |++
T Consensus        56 y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~-----~~~~~~~~~~~E~~~l~~l~h--------pn----iv~  118 (348)
T 1u5q_A           56 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGK-----QSNEKWQDIIKEVRFLQKLRH--------PN----TIQ  118 (348)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSS-----CHHHHHHHHHHHHHHHHHCCC--------TT----BCC
T ss_pred             eeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccc-----cchHHHHHHHHHHHHHHhCCC--------CC----Eee
Confidence            38899999999999999973      99999875432     223344678999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++..                              ++..|+||||+. | +|.+++.     +++..++.++.||+.|
T Consensus       119 ~~~~~~~------------------------------~~~~~lv~e~~~-g-~l~~~l~~~~~~l~~~~~~~i~~qi~~a  166 (348)
T 1u5q_A          119 YRGCYLR------------------------------EHTAWLVMEYCL-G-SASDLLEVHKKPLQEVEIAAVTHGALQG  166 (348)
T ss_dssp             EEEEEEE------------------------------TTEEEEEEECCS-E-EHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             EEEEEEE------------------------------CCeEEEEEecCC-C-CHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            9999654                              567999999998 5 6766653     8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-EEEEecCCCCCCCC--
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-IFFLDLSQDPELFS--  359 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-~i~~~~~~~pelf~--  359 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+|+...... ......|++||++.  
T Consensus       167 L~~LH~-~~ivH~Dlkp~NIll~~~~--------------------~~kL~DfG~a~~~~~~~~~~gt~~y~aPE~~~~~  225 (348)
T 1u5q_A          167 LAYLHS-HNMIHRDVKAGNILLSEPG--------------------LVKLGDFGSASIMAPANSFVGTPYWMAPEVILAM  225 (348)
T ss_dssp             HHHHHH-TTCBCCCCSGGGEEEETTT--------------------EEEECCCTTCBSSSSBCCCCSCGGGCCHHHHHTT
T ss_pred             HHHHHh-CCeeeCCCCHHHEEECCCC--------------------CEEEeeccCceecCCCCcccCCcceeCHhhhccc
Confidence            999999 9999999999999999887                    89999999998765432 22344589999884  


Q ss_pred             -CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHH
Q 013230          360 -GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAI  433 (447)
Q Consensus       360 -g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL  433 (447)
                       +...+.+.|||+ +|++.++++++..|+........+...............+++++++||.+||..|     |+++++
T Consensus       226 ~~~~~~~~~Diws-lG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll  304 (348)
T 1u5q_A          226 DEGQYDGKVDVWS-LGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLL  304 (348)
T ss_dssp             SSCCBCTHHHHHH-HHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred             cCCCCCcHHHHHH-HHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHh
Confidence             345566779999 9999999999999987654444444443322222234568899999999999999     999999


Q ss_pred             cCCCCCCCC
Q 013230          434 FDPFFSDLI  442 (447)
Q Consensus       434 ~HPff~~~~  442 (447)
                      +||||....
T Consensus       305 ~h~~~~~~~  313 (348)
T 1u5q_A          305 KHRFVLRER  313 (348)
T ss_dssp             TCHHHHSCC
T ss_pred             hChhhhccC
Confidence            999997543

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.8e-35  Score=288.77  Aligned_cols=228  Identities=17%  Similarity=0.105  Sum_probs=176.8

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCccccee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~iv  206 (447)
                      |+++++||+|+||+||+|++      ||+|++.....      ..........|+..+..+ +|        +|    |+
T Consensus        59 y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~------~~~~~~~~~~e~~~~~~~~~h--------~~----iv  120 (311)
T 3p1a_A           59 FQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFR------GPKDRARKLAEVGSHEKVGQH--------PC----CV  120 (311)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCC------SHHHHHHHHHHHHHHHHHCCC--------TT----BC
T ss_pred             eeeeheeccCCCeEEEEEEECCCCeEEEEEEeccccc------ChHHHHHHHHHHHHHHHhcCC--------Cc----EE
Confidence            39999999999999999973      99998764321      122234455666666555 55        67    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      ++++++..                              .+.+|+||||+ +| +|.+++.     +++..++.++.||+.
T Consensus       121 ~l~~~~~~------------------------------~~~~~lv~e~~-~~-~L~~~~~~~~~~l~~~~~~~i~~qi~~  168 (311)
T 3p1a_A          121 RLEQAWEE------------------------------GGILYLQTELC-GP-SLQQHCEAWGASLPEAQVWGYLRDTLL  168 (311)
T ss_dssp             CEEEEEEE------------------------------TTEEEEEEECC-CC-BHHHHHHHHCSCCCHHHHHHHHHHHHH
T ss_pred             EEEEEEEe------------------------------CCEEEEEEecc-CC-CHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            99999654                              56799999999 46 8887765     899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE----EEEecCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI----FFLDLSQDPEL  357 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~----i~~~~~~~pel  357 (447)
                      ||+|||+ .||+||||||+|||++.++                    .+||+|||+|+.......    .....|++||+
T Consensus       169 aL~~LH~-~~ivH~Dikp~NIll~~~~--------------------~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~  227 (311)
T 3p1a_A          169 ALAHLHS-QGLVHLDVKPANIFLGPRG--------------------RCKLGDFGLLVELGTAGAGEVQEGDPRYMAPEL  227 (311)
T ss_dssp             HHHHHHH-TTEECCCCSGGGEEECGGG--------------------CEEECCCTTCEECC------CCCCCGGGCCGGG
T ss_pred             HHHHHHH-CCEecCCCCHHHEEECCCC--------------------CEEEccceeeeecccCCCCcccCCCccccCHhH
Confidence            9999999 9999999999999999887                    799999999987654322    12345899999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChh-HHHHHHHHHHhhccCCC--CCccchHHHHHHHHHhcccc-----CH
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV-LWLVYLVDMLLLKKTFD--RSSKDERDLRSLKKRLDKYN-----SA  429 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~-~~~~~~~~~l~~~~~~~--~~~~~s~~l~dLl~~mL~~d-----sa  429 (447)
                      +.+ ..+.+.|||+ +|.+.++++.+..|+... .+...     . ....+  .+..+++++++||.+||..|     ||
T Consensus       228 ~~~-~~~~~~Diws-lG~il~el~~g~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~  299 (311)
T 3p1a_A          228 LQG-SYGTAADVFS-LGLTILEVACNMELPHGGEGWQQL-----R-QGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATA  299 (311)
T ss_dssp             GGT-CCSTHHHHHH-HHHHHHHHHHTCCCCSSHHHHHHH-----T-TTCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCH
T ss_pred             hcC-CCCchhhHHH-HHHHHHHHHhCCCCCCCccHHHHH-----h-ccCCCcccccCCCHHHHHHHHHHcCCChhhCcCH
Confidence            988 5777889999 999999999986554443 22211     1 11111  12457899999999999999     99


Q ss_pred             HHHHcCCCCCC
Q 013230          430 KEAIFDPFFSD  440 (447)
Q Consensus       430 ~elL~HPff~~  440 (447)
                      +|+|+||||++
T Consensus       300 ~ell~hp~~~~  310 (311)
T 3p1a_A          300 EALLALPVLRQ  310 (311)
T ss_dssp             HHHHTSGGGSC
T ss_pred             HHHHhCccccC
Confidence            99999999986

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=2.2e-35  Score=287.10  Aligned_cols=240  Identities=20%  Similarity=0.191  Sum_probs=196.5

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||.||+|++      +|+|++.....     ......+.+.+|+.+++.++|        +|    |++
T Consensus        17 y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~-----~~~~~~~~~~~e~~~l~~l~h--------~~----iv~   79 (294)
T 2rku_A           17 YVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLL-----LKPHQREKMSMEISIHRSLAH--------QH----VVG   79 (294)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGC-----CSHHHHHHHHHHHHHHHTCCC--------TT----BCC
T ss_pred             eEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhc-----cCHHHHHHHHHHHHHHHhCCC--------CC----Eee
Confidence            49999999999999999974      89999875432     222345678899999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++..                              .+.+|+||||+.+| +|.+++.    +++..++.++.||+.||
T Consensus        80 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~i~~qi~~~l  128 (294)
T 2rku_A           80 FHGFFED------------------------------NDFVFVVLELCRRR-SLLELHKRRKALTEPEARYYLRQIVLGC  128 (294)
T ss_dssp             EEEEEEC------------------------------SSEEEEEEECCTTC-BHHHHHHHHCSCCHHHHHHHHHHHHHHH
T ss_pred             eeeeecc------------------------------CCEEEEEEecCCCC-CHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            9998543                              56799999999987 9998876    89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----EEEecCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----FFLDLSQDPELF  358 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i~~~~~~~pelf  358 (447)
                      +|||+ .||+||||||+|||++.++                    .+||+|||+++.....+.     .....|++||.+
T Consensus       129 ~~lH~-~~i~H~dl~p~Nil~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~  187 (294)
T 2rku_A          129 QYLHR-NRVIHRDLKLGNLFLNEDL--------------------EVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVL  187 (294)
T ss_dssp             HHHHH-TTEECCCCCGGGEEECTTC--------------------CEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHH
T ss_pred             HHHHH-CCccccCCChHhEEEcCCC--------------------CEEEEeccCceecccCccccccccCCCCcCCcchh
Confidence            99999 9999999999999999887                    799999999987643321     123348899999


Q ss_pred             CCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHH
Q 013230          359 SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAI  433 (447)
Q Consensus       359 ~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL  433 (447)
                      .+.....+.|+|+ +|.+.++++++..|+.............  ...+..+...++++.+||++||..|     |++|++
T Consensus       188 ~~~~~~~~~Di~s-lG~~l~~l~~g~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll  264 (294)
T 2rku_A          188 SKKGHSFEVDVWS-IGCIMYTLLVGKPPFETSCLKETYLRIK--KNEYSIPKHINPVAASLIQKMLQTDPTARPTINELL  264 (294)
T ss_dssp             TTSCBCTHHHHHH-HHHHHHHHHHSSCTTCCSSHHHHHHHHH--TTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGG
T ss_pred             ccCCCCchhhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHh--hccCCCccccCHHHHHHHHHHcccChhhCcCHHHHh
Confidence            8877777889999 9999999999999987654443333333  2334445678999999999999999     999999


Q ss_pred             cCCCCCCCCCCC
Q 013230          434 FDPFFSDLIVDR  445 (447)
Q Consensus       434 ~HPff~~~~~~~  445 (447)
                      +||||++...+.
T Consensus       265 ~~~~~~~~~~~~  276 (294)
T 2rku_A          265 NDEFFTSGYIPA  276 (294)
T ss_dssp             GSHHHHTSCCCS
T ss_pred             hChheecCCcCC
Confidence            999998765543

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-35  Score=296.60  Aligned_cols=237  Identities=16%  Similarity=0.198  Sum_probs=185.2

Q ss_pred             CcceEEeccccceEEEEece-----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          134 PENIVKVGEGTFGEAFLAGN-----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~-----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      |++++.||+|+||.||+|.+     ||+|++....      ......+.+.+|+.+++.|+|          .|++|+++
T Consensus        11 y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~------~~~~~~~~~~~E~~~l~~l~~----------~~~~iv~~   74 (343)
T 3dbq_A           11 YSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEE------ADNQTLDSYRNEIAYLNKLQQ----------HSDKIIRL   74 (343)
T ss_dssp             EEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTT------CCHHHHHHHHHHHHHHHHHTT----------TCTTBCCE
T ss_pred             EEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccc------cchHHHHHHHHHHHHHHhhhh----------cCCceEEE
Confidence            59999999999999999973     9999987553      223344678999999999986          12459999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~  284 (447)
                      ++++..                              ++.+|+|||+ .+| +|.+++.    +++..++.++.||+.||+
T Consensus        75 ~~~~~~------------------------------~~~~~lv~e~-~~~-~L~~~l~~~~~~~~~~~~~i~~qi~~al~  122 (343)
T 3dbq_A           75 YDYEIT------------------------------DQYIYMVMEC-GNI-DLNSWLKKKKSIDPWERKSYWKNMLEAVH  122 (343)
T ss_dssp             EEEEEC------------------------------SSEEEEEECC-CSE-EHHHHHHHSCCCCHHHHHHHHHHHHHHHH
T ss_pred             eeeEee------------------------------CCEEEEEEeC-CCC-CHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            998643                              5679999994 556 9999886    899999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-------EEEEecCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-------IFFLDLSQDPEL  357 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-------~i~~~~~~~pel  357 (447)
                      |||+ .||+||||||+|||++. +                    .+||+|||+|+......       ......|++||+
T Consensus       123 ~lH~-~~iiHrDikp~NIll~~-~--------------------~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~  180 (343)
T 3dbq_A          123 TIHQ-HGIVHSDLKPANFLIVD-G--------------------MLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEA  180 (343)
T ss_dssp             HHHH-TTCCCCCCCGGGEEEET-T--------------------EEEECCCSSSCCC------------CCCCSSCCHHH
T ss_pred             HHHh-CCeecCCCCcceEEEEC-C--------------------cEEEeecccccccCcccccccCCCCcCCcCcCCHHH
Confidence            9999 99999999999999974 3                    79999999998764331       123445899998


Q ss_pred             CCC-----------CCCCchHHHHHhhccCCcccccCCCCCChhH-HHHHHHHHHhhccCCCCCccchHHHHHHHHHhcc
Q 013230          358 FSG-----------PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVL-WLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDK  425 (447)
Q Consensus       358 f~g-----------~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~-~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~  425 (447)
                      +.+           ...+.+.|||+ +|++.++++.|..|+.... ....+...+........+...+.++++||.+||.
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~Diws-lG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  259 (343)
T 3dbq_A          181 IKDMSSSRENGKSKSKISPKSDVWS-LGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLK  259 (343)
T ss_dssp             HHHCC-----------CCHHHHHHH-HHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTC
T ss_pred             HhhccccccccccccCCCchhhHHH-HHHHHHHHHhCCCcchhhhhHHHHHHHHhcCCcccCCcccCCHHHHHHHHHHcC
Confidence            854           34556679999 9999999999999986532 2222333332233344456678899999999999


Q ss_pred             cc-----CHHHHHcCCCCCCC
Q 013230          426 YN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       426 ~d-----sa~elL~HPff~~~  441 (447)
                      .|     |+.|+|+||||+..
T Consensus       260 ~dp~~Rpt~~e~l~hp~~~~~  280 (343)
T 3dbq_A          260 RDPKQRISIPELLAHPYVQIQ  280 (343)
T ss_dssp             SSTTTSCCHHHHHTSHHHHSC
T ss_pred             CChhHCCCHHHHHhCcccccc
Confidence            99     99999999999743

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=5.2e-35  Score=281.16  Aligned_cols=243  Identities=21%  Similarity=0.270  Sum_probs=192.5

Q ss_pred             hhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCC
Q 013230          127 LFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLN  200 (447)
Q Consensus       127 ~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n  200 (447)
                      ..++|   ++++.||+|+||.||+|++      ||+|++....       .....+.+.+|+.+++.++|        ||
T Consensus         5 ~~~~y---~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~~~e~~~l~~l~h--------~~   66 (276)
T 2yex_A            5 FVEDW---DLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR-------AVDCPENIKKEICINKMLNH--------EN   66 (276)
T ss_dssp             HHHHE---EEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGG-------CTTHHHHHHHHHHHHHTCCC--------TT
T ss_pred             eecce---EEEEEeecCCCcEEEEEEECCCCcEEEEEEeeecc-------chhhhHHHHHHHHHHHhcCC--------CC
Confidence            34556   9999999999999999963      9999987542       12234678999999999988        88


Q ss_pred             cccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHH
Q 013230          201 ACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLL  276 (447)
Q Consensus       201 ~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~  276 (447)
                          |+++++++..                              .+..|+||||+.+| +|.+++.    +++..++.++
T Consensus        67 ----i~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~  111 (276)
T 2yex_A           67 ----VVKFYGHRRE------------------------------GNIQYLFLEYCSGG-ELFDRIEPDIGMPEPDAQRFF  111 (276)
T ss_dssp             ----BCCEEEEEEE------------------------------TTEEEEEEECCTTE-EGGGGSBTTTBCCHHHHHHHH
T ss_pred             ----ceeeeeEEEc------------------------------CCEEEEEEEecCCC-cHHHHHhhccCCCHHHHHHHH
Confidence                9999998643                              56689999999987 9998876    8999999999


Q ss_pred             HHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-------EEEE
Q 013230          277 VQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-------IFFL  349 (447)
Q Consensus       277 ~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-------~i~~  349 (447)
                      .||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+++......       ....
T Consensus       112 ~~i~~~l~~lH~-~~i~H~dl~p~Nil~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~  170 (276)
T 2yex_A          112 HQLMAGVVYLHG-IGITHRDIKPENLLLDERD--------------------NLKISDFGLATVFRYNNRERLLNKMCGT  170 (276)
T ss_dssp             HHHHHHHHHHHH-TTEECSCCSGGGEEECTTC--------------------CEEECCCTTCEECEETTEECCBCCCCSC
T ss_pred             HHHHHHHHHHHh-CCeeccCCChHHEEEccCC--------------------CEEEeeCCCccccCCCcchhcccCCccc
Confidence            999999999999 9999999999999999887                    79999999998653221       1223


Q ss_pred             ecCCCCCCCCCCCC-CchHHHHHhhccCCcccccCCCCCChhHHH-HHHHHHHhhccCCCCCccchHHHHHHHHHhcccc
Q 013230          350 DLSQDPELFSGPKG-DKQFDTYRKMKKVTEDQWEGSFPKTNVLWL-VYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       350 ~~~~~pelf~g~~~-~~~~di~s~lg~~~~~~~~~~~p~~~~~~~-~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d  427 (447)
                      ..|++||.+.+... ..+.|+|+ +|.+.+++++|..|+...... .............+....+++++++||++||..|
T Consensus       171 ~~y~aPE~~~~~~~~~~~~Di~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  249 (276)
T 2yex_A          171 LPYVAPELLKRREFHAEPVDVWS-CGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVEN  249 (276)
T ss_dssp             GGGCCGGGGTCSSBCHHHHHHHH-HHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSS
T ss_pred             cCccChHHHhcCCCCCCcchHHH-HHHHHHHHHhCCCCCCCCchHHHHHHHhhhcccccCchhhcCHHHHHHHHHHCCCC
Confidence            44899999987554 34569999 999999999999888643211 1111222112233334568999999999999999


Q ss_pred             -----CHHHHHcCCCCCCCCCC
Q 013230          428 -----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       428 -----sa~elL~HPff~~~~~~  444 (447)
                           |++|+++||||++....
T Consensus       250 p~~Rps~~~il~~~~~~~~~~~  271 (276)
T 2yex_A          250 PSARITIPDIKKDRWYNKPLKK  271 (276)
T ss_dssp             TTTSCCHHHHTTCTTTTCCCC-
T ss_pred             chhCCCHHHHhcCccccChhhc
Confidence                 99999999999977543

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=1.4e-35  Score=294.86  Aligned_cols=239  Identities=20%  Similarity=0.201  Sum_probs=196.0

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||.||+|++      +|+|++.....     ......+.+.+|+.+++.++|        +|    |++
T Consensus        43 y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~-----~~~~~~~~~~~E~~~l~~l~h--------~~----iv~  105 (335)
T 2owb_A           43 YVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLL-----LKPHQREKMSMEISIHRSLAH--------QH----VVG  105 (335)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGC-----CSHHHHHHHHHHHHHHHTCCC--------TT----BCC
T ss_pred             eEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhh-----cCHHHHHHHHHHHHHHHhCCC--------CC----CCe
Confidence            49999999999999999973      89999875432     222345678899999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++..                              .+.+|+||||+.+| +|.+++.    +++..++.++.||+.||
T Consensus       106 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~l~~~~~~~i~~qi~~aL  154 (335)
T 2owb_A          106 FHGFFED------------------------------NDFVFVVLELCRRR-SLLELHKRRKALTEPEARYYLRQIVLGC  154 (335)
T ss_dssp             EEEEEEC------------------------------SSEEEEEECCCTTC-BHHHHHHHHCSCCHHHHHHHHHHHHHHH
T ss_pred             EEEEEec------------------------------CCeEEEEEecCCCC-CHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence            9998543                              56799999999987 9998876    89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPELF  358 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pelf  358 (447)
                      .|||+ +||+||||||+|||++.++                    .+||+|||+++.....+     ......|++||++
T Consensus       155 ~~LH~-~~ivH~dlkp~NIl~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~  213 (335)
T 2owb_A          155 QYLHR-NRVIHRDLKLGNLFLNEDL--------------------EVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVL  213 (335)
T ss_dssp             HHHHH-TTEECSCCCGGGEEECTTC--------------------CEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHH
T ss_pred             HHHHH-CCCEecCCCchhEEEcCCC--------------------CEEEeeccCceecccCcccccccCCCccccCHHHh
Confidence            99999 9999999999999999887                    79999999998764332     1223448899999


Q ss_pred             CCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHH
Q 013230          359 SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAI  433 (447)
Q Consensus       359 ~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL  433 (447)
                      .+.....+.|||+ +|.+.++++.+..|+.............  ...+..+..+++++++||++||..|     |++|+|
T Consensus       214 ~~~~~~~~~Di~s-lG~il~~l~~g~~pf~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell  290 (335)
T 2owb_A          214 SKKGHSFEVDVWS-IGCIMYTLLVGKPPFETSCLKETYLRIK--KNEYSIPKHINPVAASLIQKMLQTDPTARPTINELL  290 (335)
T ss_dssp             HTSCBCTHHHHHH-HHHHHHHHHHSSCTTCCSSHHHHHHHHH--HTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGG
T ss_pred             ccCCCCchhhHHH-HHHHHHHHHHCcCCCCCCCHHHHHHHHh--cCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHh
Confidence            8877777889999 9999999999999987654433333333  2234445678899999999999999     999999


Q ss_pred             cCCCCCCCCCC
Q 013230          434 FDPFFSDLIVD  444 (447)
Q Consensus       434 ~HPff~~~~~~  444 (447)
                      +||||+....+
T Consensus       291 ~~~~~~~~~~~  301 (335)
T 2owb_A          291 NDEFFTSGYIP  301 (335)
T ss_dssp             GSHHHHTSCCC
T ss_pred             cCccccCCCcc
Confidence            99999876544

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=1.2e-35  Score=287.47  Aligned_cols=236  Identities=17%  Similarity=0.200  Sum_probs=193.3

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||.||+|++      ||+|++.....     ........+.+|+.+++.++|        ||    |++
T Consensus        16 y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~~~~~e~~~l~~l~h--------~~----i~~   78 (284)
T 2vgo_A           16 FDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQL-----EKEGVEHQLRREIEIQSHLRH--------PN----ILR   78 (284)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHH-----HHTTCHHHHHHHHHHHHTCCC--------TT----BCC
T ss_pred             ceeeheecCCCCeEEEEEEEcCCCcEEEEEEEccccc-----chHHHHHHHHHHHHHHhcCCC--------CC----Eee
Confidence            49999999999999999973      99999874321     122334678999999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++..                              .+.+|+||||+.+| +|.+++.    +++..++.++.||+.||
T Consensus        79 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~qi~~~l  127 (284)
T 2vgo_A           79 MYNYFHD------------------------------RKRIYLMLEFAPRG-ELYKELQKHGRFDEQRSATFMEELADAL  127 (284)
T ss_dssp             EEEEEEC------------------------------SSEEEEEECCCTTE-EHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             EEEEEEc------------------------------CCEEEEEEEeCCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            9999543                              56799999999988 9988876    89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---CEEEEecCCCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---DIFFLDLSQDPELFSG  360 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---g~i~~~~~~~pelf~g  360 (447)
                      .|||+ .||+||||||+|||++.++                    .+||+|||++......   .......|++||++.+
T Consensus       128 ~~lH~-~~i~H~dl~p~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~  186 (284)
T 2vgo_A          128 HYCHE-RKVIHRDIKPENLLMGYKG--------------------ELKIADFGWSVHAPSLRRRTMCGTLDYLPPEMIEG  186 (284)
T ss_dssp             HHHHT-TTEECCCCSGGGEEECTTC--------------------CEEECCCTTCEECSSSCBCCCCSCGGGCCHHHHTT
T ss_pred             HHHHH-CCceecCCCHHHEEEcCCC--------------------CEEEecccccccCcccccccccCCCCcCCHHHhcc
Confidence            99999 9999999999999999887                    7999999999765432   1223345889999988


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHcC
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      ...+.+.|+|+ +|.+.++++.|..|+...........+..  .....+..++.++++||++||..|     |++|+++|
T Consensus       187 ~~~~~~~Di~s-lG~il~~l~~g~~pf~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~h  263 (284)
T 2vgo_A          187 KTHDEKVDLWC-AGVLCYEFLVGMPPFDSPSHTETHRRIVN--VDLKFPPFLSDGSKDLISKLLRYHPPQRLPLKGVMEH  263 (284)
T ss_dssp             CCBCTTHHHHH-HHHHHHHHHHSSCTTCCSSHHHHHHHHHT--TCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTC
T ss_pred             CCCCcccchhh-HHHHHHHHHHCCCCCCCCCHhHHHHHHhc--cccCCCCcCCHHHHHHHHHHhhcCHhhCCCHHHHhhC
Confidence            77777889999 99999999999999875543333333332  233444668999999999999999     99999999


Q ss_pred             CCCCCC
Q 013230          436 PFFSDL  441 (447)
Q Consensus       436 Pff~~~  441 (447)
                      |||+..
T Consensus       264 ~~~~~~  269 (284)
T 2vgo_A          264 PWVKAN  269 (284)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            999743

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=1.6e-35  Score=299.23  Aligned_cols=275  Identities=19%  Similarity=0.225  Sum_probs=193.1

Q ss_pred             CCCcchhhhh-hccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhcccc
Q 013230          119 SAPTKLLDLF-SKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHL  191 (447)
Q Consensus       119 ~~~~~~~~~~-~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~  191 (447)
                      ..+....+.+ ++|   +++++||+|+||.||+|++      ||+|++...         ....+.+.+|+.+++.+.|.
T Consensus        26 ~~~~~~g~~~~~~y---~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---------~~~~~~~~~E~~~l~~l~~~   93 (397)
T 1wak_A           26 YHLVKIGDLFNGRY---HVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA---------EHYTETALDEIRLLKSVRNS   93 (397)
T ss_dssp             CCSSCTTCEETTTE---EEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC---------HHHHHHHHHHHHHHHHHHHS
T ss_pred             ceEEehhhhcCCeE---EEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC---------CcchHHHHHHHHHHHHHhhc
Confidence            3445555554 444   9999999999999999963      999998632         22446789999999999863


Q ss_pred             ccCCCCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhh-c----
Q 013230          192 RRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFV-L----  266 (447)
Q Consensus       192 ~~~~~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i-~----  266 (447)
                      ..   ..+| |++|+++++++...+.                          ....+|+||||+. | +|.+++ .    
T Consensus        94 ~~---~~~~-~~~iv~~~~~~~~~~~--------------------------~~~~~~lv~e~~~-~-~l~~~~~~~~~~  141 (397)
T 1wak_A           94 DP---NDPN-REMVVQLLDDFKISGV--------------------------NGTHICMVFEVLG-H-HLLKWIIKSNYQ  141 (397)
T ss_dssp             CT---TCGG-GGGBCCEEEEEEEEET--------------------------TEEEEEEEECCCC-C-BHHHHHHHTTTS
T ss_pred             CC---CCCC-cceeeeeecceeecCC--------------------------CCceEEEEEeccC-c-cHHHHHHhcccC
Confidence            21   0022 6669999999775432                          1356899999995 5 454443 2    


Q ss_pred             -CCHHHHHHHHHHHHHHHHHHHHhC-CeeeccCCCCCEEEecCCCc------------------------------cccc
Q 013230          267 -LNINEARSLLVQVTAGLAVAEAAY-EFEHRDLHWGNVLLSRNDSV------------------------------TMNF  314 (447)
Q Consensus       267 -l~~~~~~~i~~Qil~gL~ylH~~~-~iiHrDLKpeNILl~~~~~~------------------------------~~~~  314 (447)
                       +++..++.++.||+.||+|||+ . ||+||||||+|||++.++..                              ...+
T Consensus       142 ~~~~~~~~~i~~qi~~aL~~lH~-~~givHrDikp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (397)
T 1wak_A          142 GLPLPCVKKIIQQVLQGLDYLHT-KCRIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNF  220 (397)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHH-TTCEECCCCSGGGEEECCCHHHHHHHHHHHC---------------------CCTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH-hCCEecCCCCHHHeeEeccchhhhhhhhhhHHHhhcCCCCCCCCccccCCcccccc
Confidence             8999999999999999999999 7 99999999999999876410                              0000


Q ss_pred             cccCcccccccCCCcEEEeeccceeecCCC--CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChh--
Q 013230          315 LLDGKQMFVRTFGLSVTIIDFTLSRINTGE--DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV--  390 (447)
Q Consensus       315 ~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~--  390 (447)
                      . .............+||+|||+|+.....  ..+....|++||++.+...+.+.|||+ +|++.+++++|..||...  
T Consensus       221 ~-~~~~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Diws-lG~il~elltg~~pf~~~~~  298 (397)
T 1wak_A          221 L-VNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWS-TACMAFELATGDYLFEPHSG  298 (397)
T ss_dssp             S-CCTTSGGGGGGCCEEECCGGGCEETTBCSCSCCSCGGGCCHHHHHTSCCCTHHHHHH-HHHHHHHHHHSSCSCCCCCC
T ss_pred             c-ccccccccccccceEeccccccccccccCccCCCCCcccCChhhcCCCCCcHHHHHH-HHHHHHHHhhCCCCCCCCcc
Confidence            0 0000000112247999999999875433  223345689999998877888889999 999999999999888521  


Q ss_pred             -------HHHHHHHHHHhh-------------------------------------ccCCCCCccchHHHHHHHHHhccc
Q 013230          391 -------LWLVYLVDMLLL-------------------------------------KKTFDRSSKDERDLRSLKKRLDKY  426 (447)
Q Consensus       391 -------~~~~~~~~~l~~-------------------------------------~~~~~~~~~~s~~l~dLl~~mL~~  426 (447)
                             .....+...+..                                     ...+..+...++++++||++||++
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~  378 (397)
T 1wak_A          299 EEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLEL  378 (397)
T ss_dssp             SSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCS
T ss_pred             cccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhcc
Confidence                   111111111100                                     001122345678899999999999


Q ss_pred             c-----CHHHHHcCCCCCC
Q 013230          427 N-----SAKEAIFDPFFSD  440 (447)
Q Consensus       427 d-----sa~elL~HPff~~  440 (447)
                      |     ||+|+|+||||++
T Consensus       379 dP~~Rpt~~e~l~hp~~~~  397 (397)
T 1wak_A          379 IPEKRATAAECLRHPWLNS  397 (397)
T ss_dssp             SGGGSCCHHHHHTSGGGGC
T ss_pred             ChhhcCCHHHHhhCccccC
Confidence            9     9999999999974

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=3.5e-35  Score=285.14  Aligned_cols=240  Identities=18%  Similarity=0.216  Sum_probs=188.4

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||.||+|.+      ||+|++.....      .....+.+.+|+.+++.++|        ||    |++
T Consensus        28 ~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~------~~~~~~~~~~e~~~l~~l~h--------~~----iv~   89 (290)
T 1t4h_A           28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKL------TKSERQRFKEEAEMLKGLQH--------PN----IVR   89 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGS------CHHHHHHHHHHHHHHTTCCC--------TT----BCC
T ss_pred             EEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhh------CHHHHHHHHHHHHHHHhCCC--------CC----eee
Confidence            48889999999999999974      89998875421      22335678999999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++.....                          ....+|+||||+.+| +|.+++.    +++..++.++.||+.||
T Consensus        90 ~~~~~~~~~~--------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~qi~~~l  142 (290)
T 1t4h_A           90 FYDSWESTVK--------------------------GKKCIVLVTELMTSG-TLKTYLKRFKVMKIKVLRSWCRQILKGL  142 (290)
T ss_dssp             EEEEEEEESS--------------------------SCEEEEEEEECCCSC-BHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             eeeeeccccC--------------------------CCceEEEEEEecCCC-CHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence            9998754221                          145689999999988 9999886    89999999999999999


Q ss_pred             HHHHHhCC--eeeccCCCCCEEEe-cCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE---EEEecCCCCCC
Q 013230          284 AVAEAAYE--FEHRDLHWGNVLLS-RNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI---FFLDLSQDPEL  357 (447)
Q Consensus       284 ~ylH~~~~--iiHrDLKpeNILl~-~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~---i~~~~~~~pel  357 (447)
                      .|||+ .|  |+||||||+|||++ .++                    .+||+|||+|+.......   .....|++||+
T Consensus       143 ~~lH~-~~~~i~H~dikp~Nil~~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~  201 (290)
T 1t4h_A          143 QFLHT-RTPPIIHRDLKCDNIFITGPTG--------------------SVKIGDLGLATLKRASFAKAVIGTPEFMAPEM  201 (290)
T ss_dssp             HHHHT-SSSCCCCSCCCGGGEEESSTTS--------------------CEEECCTTGGGGCCTTSBEESCSSCCCCCGGG
T ss_pred             HHHHc-CCCCEEECCCCHHHEEEECCCC--------------------CEEEeeCCCcccccccccccccCCcCcCCHHH
Confidence            99999 88  99999999999998 454                    799999999976554422   12334889999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc-cCCCCCccchHHHHHHHHHhcccc-----CHHH
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK-KTFDRSSKDERDLRSLKKRLDKYN-----SAKE  431 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~-~~~~~~~~~s~~l~dLl~~mL~~d-----sa~e  431 (447)
                      +.+ ....+.|+|+ +|.+.++++++..|+............+... .....+...++++++||.+||..|     |++|
T Consensus       202 ~~~-~~~~~~Di~s-lG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e  279 (290)
T 1t4h_A          202 YEE-KYDESVDVYA-FGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKD  279 (290)
T ss_dssp             GGT-CCCTHHHHHH-HHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred             Hhc-cCCCcchHHH-HHHHHHHHHhCCCCCCCcCcHHHHHHHHhccCCccccCCCCCHHHHHHHHHHccCChhhCCCHHH
Confidence            986 4677789999 9999999999999986543222223332211 111223456789999999999999     9999


Q ss_pred             HHcCCCCCCC
Q 013230          432 AIFDPFFSDL  441 (447)
Q Consensus       432 lL~HPff~~~  441 (447)
                      +|+||||++-
T Consensus       280 ll~h~~f~~~  289 (290)
T 1t4h_A          280 LLNHAFFQEE  289 (290)
T ss_dssp             HHTSGGGC--
T ss_pred             HhhCcccccC
Confidence            9999999863

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=4.6e-36  Score=300.06  Aligned_cols=239  Identities=18%  Similarity=0.201  Sum_probs=186.0

Q ss_pred             hhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCC
Q 013230          127 LFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTL  199 (447)
Q Consensus       127 ~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~  199 (447)
                      +.++|   ++++.||+|+||.||+|++      ||+|++.....            ...+|+.++.++ +|        |
T Consensus        20 ~~~~y---~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~------------~~~~E~~~l~~~~~h--------p   76 (342)
T 2qr7_A           20 FTDGY---EVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR------------DPTEEIEILLRYGQH--------P   76 (342)
T ss_dssp             HHHHE---EEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC------------CCHHHHHHHHHHTTS--------T
T ss_pred             ccccE---EEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC------------ChHHHHHHHHHhcCC--------C
Confidence            44556   9999999999999999973      99999875421            125788888887 46        7


Q ss_pred             CcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHH
Q 013230          200 NACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSL  275 (447)
Q Consensus       200 n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i  275 (447)
                      |    |+++++++..                              .+.+|+|||||.|| +|.+++.    +++..++.+
T Consensus        77 ~----iv~~~~~~~~------------------------------~~~~~lv~E~~~gg-~L~~~i~~~~~~~~~~~~~~  121 (342)
T 2qr7_A           77 N----IITLKDVYDD------------------------------GKYVYVVTELMKGG-ELLDKILRQKFFSEREASAV  121 (342)
T ss_dssp             T----BCCEEEEEEC------------------------------SSEEEEEECCCCSC-BHHHHHHTCTTCCHHHHHHH
T ss_pred             C----cCeEEEEEEc------------------------------CCEEEEEEeCCCCC-cHHHHHHHcCCCCHHHHHHH
Confidence            7    9999999543                              56799999999988 8888775    899999999


Q ss_pred             HHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----EEEe
Q 013230          276 LVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----FFLD  350 (447)
Q Consensus       276 ~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i~~~  350 (447)
                      +.||+.||+|||+ .||+||||||+|||+.....                ....+||+|||+|+.....+.     ....
T Consensus       122 ~~qi~~al~~lH~-~givHrDlkp~NIl~~~~~~----------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~  184 (342)
T 2qr7_A          122 LFTITKTVEYLHA-QGVVHRDLKPSNILYVDESG----------------NPESIRICDFGFAKQLRAENGLLMTPCYTA  184 (342)
T ss_dssp             HHHHHHHHHHHHH-TTEECSCCCGGGEEESSSSC----------------SGGGEEECCCTTCEECBCTTCCBCCSSCCS
T ss_pred             HHHHHHHHHHHHH-CCcEeccCCHHHEEEecCCC----------------CcCeEEEEECCCcccCcCCCCceeccCCCc
Confidence            9999999999999 99999999999999865431                001599999999987644321     2234


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChh---HHHHHHHHHHhhccCCC--CCccchHHHHHHHHHhcc
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV---LWLVYLVDMLLLKKTFD--RSSKDERDLRSLKKRLDK  425 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~---~~~~~~~~~l~~~~~~~--~~~~~s~~l~dLl~~mL~  425 (447)
                      .|++||++.+..++...|+|+ +|++.++++.|..||...   ........+......++  .+..+++++++||++||.
T Consensus       185 ~y~aPE~~~~~~~~~~~Diws-lG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  263 (342)
T 2qr7_A          185 NFVAPEVLERQGYDAACDIWS-LGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSVSDTAKDLVSKMLH  263 (342)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCCCCCSTTTTTSCHHHHHHHHHHTC
T ss_pred             cccCHHHhcCCCCCCccCeee-HhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCcccCccccccCCHHHHHHHHHHCC
Confidence            588999887755566679999 999999999999998642   22222333332222222  135689999999999999


Q ss_pred             cc-----CHHHHHcCCCCCCC
Q 013230          426 YN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       426 ~d-----sa~elL~HPff~~~  441 (447)
                      .|     |+.|+++||||.+.
T Consensus       264 ~dP~~R~t~~~il~hp~~~~~  284 (342)
T 2qr7_A          264 VDPHQRLTAALVLRHPWIVHW  284 (342)
T ss_dssp             SSTTTSCCHHHHTTSHHHHTG
T ss_pred             CChhHCcCHHHHhcCCeecCc
Confidence            99     99999999999653

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=5.2e-35  Score=297.75  Aligned_cols=239  Identities=22%  Similarity=0.248  Sum_probs=182.5

Q ss_pred             CcceEEeccccceEEEEece-----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          134 PENIVKVGEGTFGEAFLAGN-----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~-----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      |++++.||+|+||.||+|++     +|+|++.....            ...+|+.+++.++|        ||    |+++
T Consensus        42 Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~------------~~~~E~~il~~l~h--------~n----iv~l   97 (394)
T 4e7w_A           42 YTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR------------FKNRELQIMRIVKH--------PN----VVDL   97 (394)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT------------SCCHHHHHHHTCCC--------TT----BCCE
T ss_pred             EEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc------------hHHHHHHHHHhCCC--------CC----cceE
Confidence            49999999999999999984     88998764322            11379999999998        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------CCHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------LNINEARSLLVQVTA  281 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------l~~~~~~~i~~Qil~  281 (447)
                      ++++...+..                        .....+|+||||+.++ .+..+..       +++..++.++.||+.
T Consensus        98 ~~~~~~~~~~------------------------~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~qi~~  152 (394)
T 4e7w_A           98 KAFFYSNGDK------------------------KDEVFLNLVLEYVPET-VYRASRHYAKLKQTMPMLLIKLYMYQLLR  152 (394)
T ss_dssp             EEEEEEESSS------------------------SSCEEEEEEEECCSEE-HHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred             EEEEEecCCC------------------------CCceEEEEEeeccCcc-HHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence            9998764421                        1234488999999854 3333221       899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEe-cCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLS-RNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~-~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pe  356 (447)
                      ||+|||+ .||+||||||+|||++ .++                    .+||+|||+|+......    .+....|++||
T Consensus       153 aL~~LH~-~~ivHrDlkp~Nill~~~~~--------------------~~kL~DFG~a~~~~~~~~~~~~~~t~~y~aPE  211 (394)
T 4e7w_A          153 SLAYIHS-IGICHRDIKPQNLLLDPPSG--------------------VLKLIDFGSAKILIAGEPNVSYICSRYYRAPE  211 (394)
T ss_dssp             HHHHHHH-TTEECSCCSGGGEEEETTTT--------------------EEEECCCTTCEECCTTCCCCSSCSCGGGCCHH
T ss_pred             HHHHHHH-CCccCCCCCHHHEEEcCCCC--------------------cEEEeeCCCcccccCCCCCcccccCcCccCHH
Confidence            9999999 9999999999999999 555                    79999999998754331    12234589999


Q ss_pred             CCCCCC-CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh-----------------ccCCCC----------
Q 013230          357 LFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL-----------------KKTFDR----------  408 (447)
Q Consensus       357 lf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~-----------------~~~~~~----------  408 (447)
                      ++.+.. ++.+.|||+ +|++.++++.|..||........+..++..                 ...++.          
T Consensus       212 ~~~~~~~~~~~~DiwS-lG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (394)
T 4e7w_A          212 LIFGATNYTTNIDIWS-TGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVF  290 (394)
T ss_dssp             HHTTCSSCCTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHS
T ss_pred             HHcCCCCCCcHHHHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccccccCCcHHHhc
Confidence            887654 566779999 999999999999998654333333222210                 011111          


Q ss_pred             CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          409 SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       409 ~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                      +...++++++||++||++|     ||.|+|+||||+++..
T Consensus       291 ~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~  330 (394)
T 4e7w_A          291 RPRTPPDAIDLISRLLEYTPSARLTAIEALCHPFFDELRT  330 (394)
T ss_dssp             CTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGSTTTS
T ss_pred             cccCCHHHHHHHHHHhCCChhhCCCHHHHhcChhhhhhcc
Confidence            1237889999999999999     9999999999998754

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=1.8e-35  Score=303.73  Aligned_cols=239  Identities=20%  Similarity=0.209  Sum_probs=182.7

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|++      ||+|++.....            ...+|+.+|+.|+|        +|    ||+
T Consensus        56 y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~------------~~~~E~~il~~l~h--------pn----iv~  111 (420)
T 1j1b_A           56 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR------------FKNRELQIMRKLDH--------CN----IVR  111 (420)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT------------SCCHHHHHHHTCCC--------TT----BCC
T ss_pred             EEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch------------hHHHHHHHHHHcCC--------CC----ccc
Confidence            49999999999999999974      99998864321            12479999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQV  279 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Qi  279 (447)
                      ++++|...+..                        .....+++||||+. | +|.+++.        +++..++.++.||
T Consensus       112 l~~~~~~~~~~------------------------~~~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi  165 (420)
T 1j1b_A          112 LRYFFYSSGEK------------------------KDEVYLNLVLDYVP-E-TVYRVARHYSRAKQTLPVIYVKLYMYQL  165 (420)
T ss_dssp             EEEEEEEEETT------------------------TTEEEEEEEEECCC-E-EHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             eeeEEeccCCC------------------------CcceeEEeehhccc-c-cHHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence            99997654320                        11234789999998 3 5555432        8999999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDP  355 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~p  355 (447)
                      +.||+|||+ .||+||||||+|||++.++.                   .+||+|||+|+.....    ..+....|++|
T Consensus       166 ~~aL~~LH~-~~ivHrDlkp~NILl~~~~~-------------------~~kl~DFG~a~~~~~~~~~~~~~~t~~y~aP  225 (420)
T 1j1b_A          166 FRSLAYIHS-FGICHRDIKPQNLLLDPDTA-------------------VLKLCDFGSAKQLVRGEPNVSYICSRYYRAP  225 (420)
T ss_dssp             HHHHHHHHT-TTEECSCCSGGGEEEETTTT-------------------EEEECCCTTCEECCTTCCCCSCCSCTTSCCH
T ss_pred             HHHHHHHHH-CCccccCCChhhEEEeCCCC-------------------eEEeccchhhhhcccCCCceeeeeCCCcCCH
Confidence            999999999 99999999999999997642                   6899999999875432    12233458999


Q ss_pred             CCCCCC-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh------------cc-----CCCC---------
Q 013230          356 ELFSGP-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL------------KK-----TFDR---------  408 (447)
Q Consensus       356 elf~g~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~------------~~-----~~~~---------  408 (447)
                      |++.+. .+..+.|||+ +|++.++++.|..||........+.+++..            ..     .++.         
T Consensus       226 E~~~~~~~~~~~~DiwS-lG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~  304 (420)
T 1j1b_A          226 ELIFGATDYTSSIDVWS-AGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKV  304 (420)
T ss_dssp             HHHTTCSSCCTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCCCCCHHHH
T ss_pred             HHHcCCCCCCchhhhHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccCccCCCCHHHh
Confidence            988764 5667779999 999999999999888654333322222210            00     1111         


Q ss_pred             -CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          409 -SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       409 -~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                       ....+++++|||++||++|     |+.|+|+||||+++..
T Consensus       305 ~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~hp~f~~~~~  345 (420)
T 1j1b_A          305 FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRD  345 (420)
T ss_dssp             SCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGGC
T ss_pred             cCCCCCHHHHHHHHHhccCChhHCCCHHHHhCCHhhccccc
Confidence             1245889999999999999     9999999999987643

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=9.1e-36  Score=300.69  Aligned_cols=244  Identities=19%  Similarity=0.235  Sum_probs=174.1

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|++      ||+|++....      ........+.+|+.+++.++|        ||    |++
T Consensus        31 y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------pn----Iv~   92 (367)
T 2fst_X           31 YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAKRTYRELRLLKHMKH--------EN----VIG   92 (367)
T ss_dssp             EEEEEECC----CCEEEEEETTTTEEEEEEECSSTT------SSHHHHHHHHHHHHHHHHCCC--------TT----BCC
T ss_pred             eEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccc------cCHHHHHHHHHHHHHHHhCCC--------CC----CCc
Confidence            49999999999999999963      9999986432      122344678899999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~  284 (447)
                      +++++...+.                        ......+|+||||+ +| +|.+++.   +++..++.++.||+.||+
T Consensus        93 ~~~~~~~~~~------------------------~~~~~~~~lv~e~~-~~-~L~~~~~~~~l~~~~~~~i~~qi~~aL~  146 (367)
T 2fst_X           93 LLDVFTPARS------------------------LEEFNDVYLVTHLM-GA-DLNNIVKCQKLTDDHVQFLIYQILRGLK  146 (367)
T ss_dssp             CSEEECSCSS------------------------GGGCCCCEEEEECC-CE-ECC-----CCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCc------------------------cccCCeEEEEeccc-CC-CHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            9998643211                        11135589999999 45 9998887   999999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--CEEEEecCCCCCCCCC-C
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--DIFFLDLSQDPELFSG-P  361 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--g~i~~~~~~~pelf~g-~  361 (447)
                      |||+ .||+||||||+|||++.++                    .+||+|||+|+.....  +.+....|++||++.+ .
T Consensus       147 ~LH~-~givH~Dlkp~NIll~~~~--------------------~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~  205 (367)
T 2fst_X          147 YIHS-ADIIHRDLKPSNLAVNEDC--------------------ELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWM  205 (367)
T ss_dssp             HHHH-TTCCCCCCCGGGEEECTTC--------------------CEEECC---------------CCCTTCCHHHHTTCC
T ss_pred             HHHH-CCeeeCCCCHhhEEECCCC--------------------CEEEeeccccccccccCCCcCcCcCccChHHHcCCc
Confidence            9999 9999999999999999987                    7999999999876443  2233455899999877 4


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh----------------------c-cCCCC------Cccc
Q 013230          362 KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL----------------------K-KTFDR------SSKD  412 (447)
Q Consensus       362 ~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~----------------------~-~~~~~------~~~~  412 (447)
                      ..+.+.|||+ +|++.++++.|..||........+..++..                      . ...+.      ....
T Consensus       206 ~~~~~~Diws-lG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (367)
T 2fst_X          206 HYNQTVDIWS-VGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGA  284 (367)
T ss_dssp             SCCTTHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTTC
T ss_pred             CCCchhhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCCC
Confidence            5566779999 999999999999888654332222222110                      0 00010      1235


Q ss_pred             hHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          413 ERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       413 s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                      +++++|||++||++|     ||+|+|+||||+++..
T Consensus       285 ~~~~~dLl~~mL~~dP~~R~t~~e~L~hp~~~~~~~  320 (367)
T 2fst_X          285 NPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHD  320 (367)
T ss_dssp             CHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCC
T ss_pred             CHHHHHHHHHhCCCCcccCcCHHHHhcChhhhhccC
Confidence            789999999999999     9999999999998754

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=1.4e-35  Score=291.23  Aligned_cols=241  Identities=20%  Similarity=0.179  Sum_probs=179.5

Q ss_pred             Ccce-EEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCcccce
Q 013230          134 PENI-VKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTTF  205 (447)
Q Consensus       134 ~~~~-~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~i  205 (447)
                      |++. +.||+|+||.||+|+      .||+|++....        ......+.+|+.+++++ +|        ||    |
T Consensus        14 y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~~~~h--------~~----i   73 (316)
T 2ac3_A           14 YQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQP--------GHIRSRVFREVEMLYQCQGH--------RN----V   73 (316)
T ss_dssp             CEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCS--------SCCHHHHHHHHHHHHHTCCC--------TT----B
T ss_pred             EEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCc--------chhHHHHHHHHHHHHHhcCC--------CC----e
Confidence            4774 679999999999997      39999987432        22346789999999885 56        77    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTA  281 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~  281 (447)
                      +++++++..                              ++.+|+||||+.|| +|.+++.    +++..++.++.||+.
T Consensus        74 ~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~i~~qi~~  122 (316)
T 2ac3_A           74 LELIEFFEE------------------------------EDRFYLVFEKMRGG-SILSHIHKRRHFNELEASVVVQDVAS  122 (316)
T ss_dssp             CCEEEEEEE------------------------------TTEEEEEEECCTTC-BHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             eeEEEEEee------------------------------CCEEEEEEEcCCCC-cHHHHHhccCCCCHHHHHHHHHHHHH
Confidence            999999654                              56799999999988 9998886    899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE------------EEE
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI------------FFL  349 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~------------i~~  349 (447)
                      ||+|||+ .||+||||||+|||++.++.                 ...+||+|||+++.....+.            ...
T Consensus       123 ~l~~lH~-~~ivH~dlkp~Nil~~~~~~-----------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt  184 (316)
T 2ac3_A          123 ALDFLHN-KGIAHRDLKPENILCEHPNQ-----------------VSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGS  184 (316)
T ss_dssp             HHHHHHH-TTCCCCCCCGGGEEESCSSS-----------------SCSEEECCTTCCC-------------------CCS
T ss_pred             HHHHHHh-CCceeCCCCHHHEEEccCCC-----------------cCceEEEEccCccccccCCccccccccccccccCC
Confidence            9999999 99999999999999998751                 11499999999986543210            123


Q ss_pred             ecCCCCCCCCC-----CCCCchHHHHHhhccCCcccccCCCCCChhH---------------HHHHHHHHHhhccCCCC-
Q 013230          350 DLSQDPELFSG-----PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVL---------------WLVYLVDMLLLKKTFDR-  408 (447)
Q Consensus       350 ~~~~~pelf~g-----~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~---------------~~~~~~~~l~~~~~~~~-  408 (447)
                      ..|++||++.+     ...+.+.|||+ +|.+.+++++|..|+....               .......+......++. 
T Consensus       185 ~~y~aPE~~~~~~~~~~~~~~~~Diws-lG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  263 (316)
T 2ac3_A          185 AEYMAPEVVEAFSEEASIYDKRCDLWS-LGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDK  263 (316)
T ss_dssp             GGGCCHHHHHHTSHHHHHHTTTHHHHH-HHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCCCCCCHH
T ss_pred             cCccChHHhhcccccccCCCcccccHh-HHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHHHHhccCcccCch
Confidence            34889998864     23455679999 9999999999998885421               11111222211122221 


Q ss_pred             -CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          409 -SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       409 -~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                       ...+++++++||++||..|     ||+|+|+||||++...+
T Consensus       264 ~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~~~~~~~~  305 (316)
T 2ac3_A          264 DWAHISCAAKDLISKLLVRDAKQRLSAAQVLQHPWVQGCAPE  305 (316)
T ss_dssp             HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSTTCC-----
T ss_pred             hcccCCHHHHHHHHHHhhCChhhCCCHHHHhcChhhcCCCCc
Confidence             1347899999999999999     99999999999976443

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.3e-35  Score=294.65  Aligned_cols=244  Identities=20%  Similarity=0.222  Sum_probs=184.6

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|++++.||+|+||.||+|++      ||+|++.....   ..........+.+|+.+++.++|        ||    |+
T Consensus        11 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~~~~~E~~~l~~l~h--------~~----iv   75 (346)
T 1ua2_A           11 RYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHR---SEAKDGINRTALREIKLLQELSH--------PN----II   75 (346)
T ss_dssp             --CEEEEEEEETTEEEEEEECSSCCSEEEEEEC---------------CTHHHHHHHHHHHCCC--------TT----BC
T ss_pred             ccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCc---chhhhhhhHHHHHHHHHHhhCCC--------CC----CC
Confidence            459999999999999999973      99999875422   01111223567899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      ++++++.                              ..+.+|+||||+. | +|..++.     +++..++.++.||+.
T Consensus        76 ~~~~~~~------------------------------~~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~~~~~~~~~qi~~  123 (346)
T 1ua2_A           76 GLLDAFG------------------------------HKSNISLVFDFME-T-DLEVIIKDNSLVLTPSHIKAYMLMTLQ  123 (346)
T ss_dssp             CEEEEEC------------------------------CTTCCEEEEECCS-E-EHHHHHTTCCSSCCSSHHHHHHHHHHH
T ss_pred             eEEEEEe------------------------------eCCceEEEEEcCC-C-CHHHHHHhcCcCCCHHHHHHHHHHHHH
Confidence            9999853                              2567999999998 4 7887765     889999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pe  356 (447)
                      ||+|||+ .||+||||||+|||++.++                    .+||+|||+|+......     ......|++||
T Consensus       124 ~l~~lH~-~~ivH~Dlkp~Nil~~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE  182 (346)
T 1ua2_A          124 GLEYLHQ-HWILHRDLKPNNLLLDENG--------------------VLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPE  182 (346)
T ss_dssp             HHHHHHH-TTCCCCCCCGGGEEECTTC--------------------CEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHH
T ss_pred             HHHHHHH-CCEECCCCCHHHEEEcCCC--------------------CEEEEecccceeccCCcccCCcccccccccCch
Confidence            9999999 9999999999999999987                    79999999998764332     22345589999


Q ss_pred             CCCCCC-CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhcc-----CCCC---------------------C
Q 013230          357 LFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKK-----TFDR---------------------S  409 (447)
Q Consensus       357 lf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~-----~~~~---------------------~  409 (447)
                      ++.+.. .....|||+ +|++.++++.+..|+........+..++....     .++.                     .
T Consensus       183 ~~~~~~~~~~~~Diws-lG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (346)
T 1ua2_A          183 LLFGARMYGVGVDMWA-VGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIF  261 (346)
T ss_dssp             HHTTCSCCCHHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHC
T ss_pred             HhhCCCCCCchhhhHh-HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhh
Confidence            887644 456679999 99999999999888765433333333321100     0000                     1


Q ss_pred             ccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCCC
Q 013230          410 SKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVDR  445 (447)
Q Consensus       410 ~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~~  445 (447)
                      ...++++++||++||..|     ||+|+|+||||++...+.
T Consensus       262 ~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h~~f~~~~~~~  302 (346)
T 1ua2_A          262 SAAGDDLLDLIQGLFLFNPCARITATQALKMKYFSNRPGPT  302 (346)
T ss_dssp             TTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSGGGTSSSCCC
T ss_pred             ccCCHHHHHHHHHHhccChhhCCCHHHHhcChhhhcCCCCC
Confidence            345789999999999999     999999999999765543

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=2.4e-35  Score=297.17  Aligned_cols=247  Identities=19%  Similarity=0.252  Sum_probs=192.2

Q ss_pred             hhhhccCCCcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCC
Q 013230          126 DLFSKYSDPENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDT  198 (447)
Q Consensus       126 ~~~~~y~~~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~  198 (447)
                      .+.++|   ++.+.||+|+||.||+|+      .||+|++................+.+.+|+.+++.+ +|        
T Consensus        91 ~~~~~y---~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h--------  159 (365)
T 2y7j_A           91 EFYQKY---DPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGH--------  159 (365)
T ss_dssp             HHHHHE---EEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTC--------
T ss_pred             hhhhhc---ccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCC--------
Confidence            344556   999999999999999996      399999876532111111122346778999999999 67        


Q ss_pred             CCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHH
Q 013230          199 LNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARS  274 (447)
Q Consensus       199 ~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~  274 (447)
                      ||    |+++++++..                              .+..|+||||+.|| +|.+++.    +++..++.
T Consensus       160 p~----iv~~~~~~~~------------------------------~~~~~lv~e~~~g~-~L~~~l~~~~~l~~~~~~~  204 (365)
T 2y7j_A          160 PH----IITLIDSYES------------------------------SSFMFLVFDLMRKG-ELFDYLTEKVALSEKETRS  204 (365)
T ss_dssp             TT----BCCEEEEEEB------------------------------SSEEEEEECCCTTC-BHHHHHHHHSSCCHHHHHH
T ss_pred             CC----EeEEEEEEee------------------------------CCEEEEEEEeCCCC-cHHHHHHhcCCCCHHHHHH
Confidence            77    9999998643                              46699999999988 9999876    89999999


Q ss_pred             HHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEe
Q 013230          275 LLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLD  350 (447)
Q Consensus       275 i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~  350 (447)
                      ++.||+.||.|||+ .||+||||||+|||++.++                    .+||+|||+++......    .....
T Consensus       205 i~~qi~~~L~~LH~-~gi~H~Dlkp~NIl~~~~~--------------------~ikl~DfG~~~~~~~~~~~~~~~gt~  263 (365)
T 2y7j_A          205 IMRSLLEAVSFLHA-NNIVHRDLKPENILLDDNM--------------------QIRLSDFGFSCHLEPGEKLRELCGTP  263 (365)
T ss_dssp             HHHHHHHHHHHHHH-TTEECSCCSGGGEEECTTC--------------------CEEECCCTTCEECCTTCCBCCCCSCG
T ss_pred             HHHHHHHHHHHHHh-CCeecCCCCHHHEEECCCC--------------------CEEEEecCcccccCCCcccccCCCCC
Confidence            99999999999999 9999999999999999987                    79999999998765432    12234


Q ss_pred             cCCCCCCCCCC------CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHH
Q 013230          351 LSQDPELFSGP------KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKR  422 (447)
Q Consensus       351 ~~~~pelf~g~------~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~  422 (447)
                      .|++||++.+.      ..+.+.|||+ +|++.+++++|..|+........+..+......++.  ....+.++++||++
T Consensus       264 ~y~aPE~~~~~~~~~~~~~~~~~Di~s-lG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~  342 (365)
T 2y7j_A          264 GYLAPEILKCSMDETHPGYGKEVDLWA-CGVILFTLLAGSPPFWHRRQILMLRMIMEGQYQFSSPEWDDRSSTVKDLISR  342 (365)
T ss_dssp             GGCCHHHHHHTTCTTSCCBCTTHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCHHHHSSSCHHHHHHHHH
T ss_pred             CccChhhccccccccCcCCCchhhHHh-HHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCcccccCCHHHHHHHHH
Confidence            58899988532      3455679999 999999999999998764433333333322222221  23578899999999


Q ss_pred             hcccc-----CHHHHHcCCCCCC
Q 013230          423 LDKYN-----SAKEAIFDPFFSD  440 (447)
Q Consensus       423 mL~~d-----sa~elL~HPff~~  440 (447)
                      ||..|     |++|+|+||||+.
T Consensus       343 ~L~~dP~~Rps~~ell~hp~f~r  365 (365)
T 2y7j_A          343 LLQVDPEARLTAEQALQHPFFER  365 (365)
T ss_dssp             HSCSSTTTSCCHHHHHHSGGGCC
T ss_pred             HcCCChhHCcCHHHHhcCcccCC
Confidence            99999     9999999999974

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.4e-35  Score=288.97  Aligned_cols=242  Identities=20%  Similarity=0.255  Sum_probs=186.8

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCccccee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~iv  206 (447)
                      |++++.||+|+||.||+|++      ||+|++.....         ..+.+.+|+.+++.+ +|        ||    |+
T Consensus        26 y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~---------~~~~~~~e~~~l~~l~~h--------~~----i~   84 (326)
T 2x7f_A           26 FELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD---------EEEEIKQEINMLKKYSHH--------RN----IA   84 (326)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS---------TTHHHHHHHHHHHHHCCS--------TT----BC
T ss_pred             EEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc---------cHHHHHHHHHHHHhccCC--------CC----ee
Confidence            49999999999999999974      99999874421         236788999999999 56        77    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVT  280 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil  280 (447)
                      ++++++.....                        ....+.+|+||||+.+| +|.+++.      +++..++.++.||+
T Consensus        85 ~~~~~~~~~~~------------------------~~~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~i~~qi~  139 (326)
T 2x7f_A           85 TYYGAFIKKNP------------------------PGMDDQLWLVMEFCGAG-SVTDLIKNTKGNTLKEEWIAYICREIL  139 (326)
T ss_dssp             CEEEEEEECC--------------------------CCCCEEEEEEECCTTE-EHHHHHHHSGGGCCCHHHHHHHHHHHH
T ss_pred             eeeeEEeeccC------------------------ccccceEEEEEEcCCCC-cHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence            99999765221                        01145799999999988 9998875      89999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDP  355 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~p  355 (447)
                      .||+|||+ .||+||||||+|||++.++                    .+||+|||+++.....     .......|++|
T Consensus       140 ~~l~~lH~-~~ivH~dlkp~NIl~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aP  198 (326)
T 2x7f_A          140 RGLSHLHQ-HKVIHRDIKGQNVLLTENA--------------------EVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAP  198 (326)
T ss_dssp             HHHHHHHH-TTCCCCCCSGGGEEECTTC--------------------CEEECCCTTTC-------------CCGGGCCH
T ss_pred             HHHHHHHH-CCccccCCcHHHEEEcCCC--------------------CEEEeeCcCceecCcCccccccccCCccccCh
Confidence            99999999 9999999999999999887                    7999999999875432     12233458899


Q ss_pred             CCCC-----CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc---
Q 013230          356 ELFS-----GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN---  427 (447)
Q Consensus       356 elf~-----g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d---  427 (447)
                      |++.     +.....+.|||+ +|.+.++++++..|+........................+++++++||++||..|   
T Consensus       199 E~~~~~~~~~~~~~~~~Di~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~  277 (326)
T 2x7f_A          199 EVIACDENPDATYDFKSDLWS-LGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQ  277 (326)
T ss_dssp             HHHC--------CCTTHHHHH-HHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCSCSCHHHHHHHHHHCCSSGGG
T ss_pred             hhhccccccCcCCCccchHHH-HHHHHHHHHhCCCCCCCCcHHHHHHHhhcCccccCCccccCHHHHHHHHHHhccChhh
Confidence            9886     334556679999 9999999999999986654333333332211111223567899999999999999   


Q ss_pred             --CHHHHHcCCCCCCCCC
Q 013230          428 --SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       428 --sa~elL~HPff~~~~~  443 (447)
                        |++|+++||||++...
T Consensus       278 Rps~~~ll~hp~~~~~~~  295 (326)
T 2x7f_A          278 RPATEQLMKHPFIRDQPN  295 (326)
T ss_dssp             SCCHHHHHTSHHHHCCTT
T ss_pred             CCCHHHHhhChHHhhCcc
Confidence              9999999999987654

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=1.8e-35  Score=297.31  Aligned_cols=243  Identities=20%  Similarity=0.252  Sum_probs=188.2

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|++++.||+|+||.||+|++      ||+|++...       ........+.+|+.+++.++|        ||    |+
T Consensus        28 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-------~~~~~~~~~~~E~~~l~~l~h--------~n----iv   88 (364)
T 3qyz_A           28 RYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPF-------EHQTYCQRTLREIKILLRFRH--------EN----II   88 (364)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCT-------TCHHHHHHHHHHHHHHHHCCC--------TT----BC
T ss_pred             cEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccc-------cCcHHHHHHHHHHHHHHhcCC--------CC----Cc
Confidence            359999999999999999973      999988643       223344678999999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGL  283 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL  283 (447)
                      ++++++...+                         ......+|+||||+. | +|.+++.   +++..++.++.||+.||
T Consensus        89 ~~~~~~~~~~-------------------------~~~~~~~~iv~e~~~-~-~L~~~l~~~~~~~~~~~~i~~qi~~aL  141 (364)
T 3qyz_A           89 GINDIIRAPT-------------------------IEQMKDVYIVQDLME-T-DLYKLLKTQHLSNDHICYFLYQILRGL  141 (364)
T ss_dssp             CCCEEECCSS-------------------------TTTCCCEEEEEECCS-E-EHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             cceeEEecCC-------------------------ccccceEEEEEcccC-c-CHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999864311                         122356899999997 5 8988877   99999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--------CEEEEecCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--------DIFFLDLSQDP  355 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--------g~i~~~~~~~p  355 (447)
                      +|||+ .||+||||||+|||++.++                    .+||+|||+|+.....        .......|++|
T Consensus       142 ~~LH~-~~ivH~Dikp~NIl~~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aP  200 (364)
T 3qyz_A          142 KYIHS-ANVLHRDLKPSNLLLNTTC--------------------DLKICDFGLARVADPDHDHTGFLTEYVATRWYRAP  200 (364)
T ss_dssp             HHHHH-TTEECCCCCGGGEEECTTC--------------------CEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCH
T ss_pred             HHHHH-CCeecCCCChHhEEECCCC--------------------CEEEEeCcceEecCCCCCccccccccccccCCCCC
Confidence            99999 9999999999999999987                    7999999999875432        11234458899


Q ss_pred             CCCCCC-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh--c------------------cCCCC------
Q 013230          356 ELFSGP-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL--K------------------KTFDR------  408 (447)
Q Consensus       356 elf~g~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~--~------------------~~~~~------  408 (447)
                      |++.+. ....+.|||+ +|.+.+++++|..|+........+..+...  .                  ..++.      
T Consensus       201 E~~~~~~~~~~~~Diws-lG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (364)
T 3qyz_A          201 EIMLNSKGYTKSIDIWS-VGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPW  279 (364)
T ss_dssp             HHHHTBCSCSTHHHHHH-HHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCH
T ss_pred             HHhcCCCCCCcchhHHH-HHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcCCccCCCH
Confidence            976543 3566779999 999999999999888644222222111100  0                  00010      


Q ss_pred             ---CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          409 ---SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       409 ---~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                         ....++++++||++||++|     |++|+|+||||++...
T Consensus       280 ~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~~~~  322 (364)
T 3qyz_A          280 NRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYD  322 (364)
T ss_dssp             HHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTTCC
T ss_pred             HHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcCcchhhccC
Confidence               1346889999999999999     9999999999998754

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=2.2e-35  Score=300.23  Aligned_cols=237  Identities=16%  Similarity=0.196  Sum_probs=185.6

Q ss_pred             CcceEEeccccceEEEEece-----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          134 PENIVKVGEGTFGEAFLAGN-----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~-----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      |++++.||+|+||.||+|.+     ||+|++.....      .....+.+.+|+.+|+.|.|          .||+|+++
T Consensus        58 y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~------~~~~~~~~~~Ei~~l~~l~~----------~~~~iv~~  121 (390)
T 2zmd_A           58 YSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA------DNQTLDSYRNEIAYLNKLQQ----------HSDKIIRL  121 (390)
T ss_dssp             EEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTC------CHHHHHHHHHHHHHHHHHTT----------TCTTBCCE
T ss_pred             eEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccc------cHHHHHHHHHHHHHHHHccc----------CCCeEEEE
Confidence            59999999999999999963     99999876532      23345778999999999975          12449999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~  284 (447)
                      ++++..                              ++.+|+||| +.+| +|.+++.    +++..++.++.||+.||.
T Consensus       122 ~~~~~~------------------------------~~~~~lv~E-~~~~-~L~~~l~~~~~~~~~~~~~i~~qi~~aL~  169 (390)
T 2zmd_A          122 YDYEIT------------------------------DQYIYMVME-CGNI-DLNSWLKKKKSIDPWERKSYWKNMLEAVH  169 (390)
T ss_dssp             EEEEEC------------------------------SSEEEEEEE-CCSE-EHHHHHHHCSSCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEec------------------------------CCEEEEEEe-cCCC-CHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            998653                              566999999 5556 9999886    899999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-------EEEEecCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-------IFFLDLSQDPEL  357 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-------~i~~~~~~~pel  357 (447)
                      |||+ .||+||||||+|||++. +                    .+||+|||+|+......       .+....|++||+
T Consensus       170 ~lH~-~~ivHrDlkp~NIll~~-~--------------------~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~  227 (390)
T 2zmd_A          170 TIHQ-HGIVHSDLKPANFLIVD-G--------------------MLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEA  227 (390)
T ss_dssp             HHHT-TTCCCCCCCGGGEEESS-S--------------------CEEECCCSSSCCC---------CCSCCCGGGCCHHH
T ss_pred             HHHH-CCeeecCCCHHHEEEEC-C--------------------eEEEEecCccccccCCCccccCCCCCcCCCccChHH
Confidence            9999 99999999999999954 3                    69999999998764331       123455899999


Q ss_pred             CCC-----------CCCCchHHHHHhhccCCcccccCCCCCChhH-HHHHHHHHHhhccCCCCCccchHHHHHHHHHhcc
Q 013230          358 FSG-----------PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVL-WLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDK  425 (447)
Q Consensus       358 f~g-----------~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~-~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~  425 (447)
                      +.+           ...+.+.|||+ +|++.++++.|..||.... ....+...+.....++.+...+.++++||++||.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~DiwS-lGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~  306 (390)
T 2zmd_A          228 IKDMSSSRENGKSKSKISPKSDVWS-LGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLK  306 (390)
T ss_dssp             HHCC------------CCHHHHHHH-HHHHHHHHHHSSCTTTTCCCHHHHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTC
T ss_pred             hhhccccccccccccCCCChhhHHH-HHHHHHHHHHCCCcchhhhHHHHHHHHHhCccccCCCCccchHHHHHHHHHHcc
Confidence            865           24556679999 9999999999999986531 2223333343333444455668899999999999


Q ss_pred             cc-----CHHHHHcCCCCCCC
Q 013230          426 YN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       426 ~d-----sa~elL~HPff~~~  441 (447)
                      .|     |+.|+|+||||+..
T Consensus       307 ~dP~~Rps~~ell~hp~~~~~  327 (390)
T 2zmd_A          307 RDPKQRISIPELLAHPYVQIQ  327 (390)
T ss_dssp             SSTTTSCCHHHHHTSHHHHSC
T ss_pred             cChhhCCCHHHHhhCcCcccc
Confidence            99     99999999999754

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=7.4e-35  Score=283.45  Aligned_cols=247  Identities=20%  Similarity=0.264  Sum_probs=192.8

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccc-cccccchHHHHHHHHHHHhcc-ccccCCCCCCCcccc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVN-GEAQKKSEELLEEVVLSWTLN-HLRRNEGDTLNACTT  204 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~-~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~n~~~~  204 (447)
                      +|++.+.||+|+||.||+|++      ||+|++......... ...+...+.+.+|+.+++++. |        ||    
T Consensus        18 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h--------~~----   85 (298)
T 1phk_A           18 NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGH--------PN----   85 (298)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTC--------TT----
T ss_pred             ccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCC--------CC----
Confidence            349999999999999999973      999999765321000 011233467889999999996 6        77    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVT  280 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil  280 (447)
                      |+++++++..                              ++..|+||||+.+| +|.+++.    +++..++.++.||+
T Consensus        86 i~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~qi~  134 (298)
T 1phk_A           86 IIQLKDTYET------------------------------NTFFFLVFDLMKKG-ELFDYLTEKVTLSEKETRKIMRALL  134 (298)
T ss_dssp             BCCEEEEEEC------------------------------SSEEEEEEECCTTC-BHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             Eeeeeeeecc------------------------------CCeEEEEEeccCCC-cHHHHHhccCCCCHHHHHHHHHHHH
Confidence            9999998543                              56799999999988 9999886    89999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPE  356 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pe  356 (447)
                      .||+|||+ .||+||||||+|||++.++                    .+||+|||+++......    ......|++||
T Consensus       135 ~~l~~lH~-~~i~H~dl~p~Nil~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE  193 (298)
T 1phk_A          135 EVICALHK-LNIVHRDLKPENILLDDDM--------------------NIKLTDFGFSCQLDPGEKLREVCGTPSYLAPE  193 (298)
T ss_dssp             HHHHHHHH-TTEECSCCSGGGEEECTTC--------------------CEEECCCTTCEECCTTCCBCCCCSCGGGCCHH
T ss_pred             HHHHHHHH-CCcccCCCCcceEEEcCCC--------------------cEEEecccchhhcCCCcccccccCCccccCHH
Confidence            99999999 9999999999999999887                    79999999998765432    12233478898


Q ss_pred             CCC------CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc-
Q 013230          357 LFS------GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN-  427 (447)
Q Consensus       357 lf~------g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d-  427 (447)
                      ++.      +.....+.|+|+ +|.+.++++.+..|+..................++.  ...++.++++||.+||..| 
T Consensus       194 ~~~~~~~~~~~~~~~~~Di~s-lG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp  272 (298)
T 1phk_A          194 IIECSMNDNHPGYGKEVDMWS-TGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQP  272 (298)
T ss_dssp             HHHHHHCTTSCCBCTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSG
T ss_pred             HhccccccccccCCcccccHh-HHHHHHHHHHCCCCCcCccHHHHHHHHhcCCcccCcccccccCHHHHHHHHHHccCCc
Confidence            874      334456679999 999999999999998665443333333332223332  2467899999999999999 


Q ss_pred             ----CHHHHHcCCCCCCCCCC
Q 013230          428 ----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       428 ----sa~elL~HPff~~~~~~  444 (447)
                          |++|+|+||||++...+
T Consensus       273 ~~Rps~~~ll~h~~~~~~~~~  293 (298)
T 1phk_A          273 QKRYTAEEALAHPFFQQYVVE  293 (298)
T ss_dssp             GGSCCHHHHTTSGGGCTTC--
T ss_pred             ccCCCHHHHHhChHhhhccch
Confidence                99999999999988654

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=5.6e-35  Score=281.18  Aligned_cols=238  Identities=18%  Similarity=0.214  Sum_probs=190.1

Q ss_pred             CCcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||+|+||.||+|+      .||+|++.....     ......+.+.+|+.+++.++|        ||    |+
T Consensus        12 ~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~~~~~e~~~l~~l~h--------~~----i~   74 (276)
T 2h6d_A           12 HYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKI-----RSLDVVGKIKREIQNLKLFRH--------PH----II   74 (276)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHH-----HHTTCHHHHHHHHHHHHTCCC--------TT----BC
T ss_pred             cEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccc-----cchhHHHHHHHHHHHHhcCCC--------CC----Ee
Confidence            45999999999999999996      399999874321     122345678999999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              .+..|+||||+.+| +|.+++.    +++..++.++.||+.|
T Consensus        75 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~qi~~~  123 (276)
T 2h6d_A           75 KLYQVIST------------------------------PTDFFMVMEYVSGG-ELFDYICKHGRVEEMEARRLFQQILSA  123 (276)
T ss_dssp             CEEEEEEC------------------------------SSEEEEEEECCCSC-BHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             EEEEEEec------------------------------CCeEEEEEeccCCC-cHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            99998543                              56799999999987 9999886    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPELF  358 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pelf  358 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+++......    ......|++||.+
T Consensus       124 l~~lH~-~~i~H~dl~p~Nil~~~~~--------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~  182 (276)
T 2h6d_A          124 VDYCHR-HMVVHRDLKPENVLLDAHM--------------------NAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVI  182 (276)
T ss_dssp             HHHHHH-HCSSCCCCCGGGEEECTTS--------------------CEEECCCCGGGCCCC-------------CCTGGG
T ss_pred             HHHHHH-CCCccCCCChhhEEECCCC--------------------CEEEeecccccccCCCcceecccCCccccCHHHH
Confidence            999999 9999999999999999887                    79999999998765432    2233458999999


Q ss_pred             CCCCCC-chHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHH
Q 013230          359 SGPKGD-KQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEA  432 (447)
Q Consensus       359 ~g~~~~-~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~el  432 (447)
                      .+.... .+.|+|+ +|.+.++++.+..|+.............  ...+..+...+.++++||.+||..|     |++|+
T Consensus       183 ~~~~~~~~~~Di~s-lG~~l~~l~~g~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~  259 (276)
T 2h6d_A          183 SGRLYAGPEVDIWS-CGVILYALLCGTLPFDDEHVPTLFKKIR--GGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDI  259 (276)
T ss_dssp             TTSCCCHHHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHH--HCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             cCCCCCCccchHHH-HHHHHHHHHhCCCCCCCCcHHHHHHHhh--cCcccCchhcCHHHHHHHHHHccCChhhCCCHHHH
Confidence            886553 5569999 9999999999999987654433333332  2333445668899999999999999     99999


Q ss_pred             HcCCCCCCCC
Q 013230          433 IFDPFFSDLI  442 (447)
Q Consensus       433 L~HPff~~~~  442 (447)
                      ++||||++..
T Consensus       260 l~h~~~~~~~  269 (276)
T 2h6d_A          260 REHEWFKQDL  269 (276)
T ss_dssp             HHSHHHHTTC
T ss_pred             HhChhhccCc
Confidence            9999998654

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=6.7e-35  Score=287.82  Aligned_cols=259  Identities=19%  Similarity=0.211  Sum_probs=188.3

Q ss_pred             CcceEEeccccceEEEEec-------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          134 PENIVKVGEGTFGEAFLAG-------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      |++++.||+|+||.||+|.       .||+|++...         ....+.+.+|+.+++.++|..      ++.+++++
T Consensus        16 y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~---------~~~~~~~~~e~~~l~~l~~~~------~~~~~~i~   80 (339)
T 1z57_A           16 YEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV---------DRYCEAARSEIQVLEHLNTTD------PNSTFRCV   80 (339)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS---------HHHHHHHHHHHHHHHHHHHHC------TTCTTCBC
T ss_pred             eEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC---------CchhHHHHHHHHHHHHhhhcC------CCCceeeE
Confidence            4999999999999999995       3999998632         234467889999999998832      22355699


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVT  280 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil  280 (447)
                      ++++++..                              .+.+|+||||+ +| +|.+++.      +++..++.++.||+
T Consensus        81 ~~~~~~~~------------------------------~~~~~lv~e~~-~~-~l~~~l~~~~~~~~~~~~~~~~~~qi~  128 (339)
T 1z57_A           81 QMLEWFEH------------------------------HGHICIVFELL-GL-STYDFIKENGFLPFRLDHIRKMAYQIC  128 (339)
T ss_dssp             CEEEEEEE------------------------------TTEEEEEEECC-CC-BHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred             eeeccccc------------------------------CCcEEEEEcCC-CC-CHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence            99998654                              56799999999 56 8888875      78999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC--EEEEecCCCCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED--IFFLDLSQDPELF  358 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g--~i~~~~~~~pelf  358 (447)
                      .||+|||+ +||+||||||+|||++..+... .+...............+||+|||+|+......  ......|++||++
T Consensus       129 ~~l~~lH~-~~ivH~Dlkp~Nil~~~~~~~~-~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~  206 (339)
T 1z57_A          129 KSVNFLHS-NKLTHTDLKPENILFVQSDYTE-AYNPKIKRDERTLINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVI  206 (339)
T ss_dssp             HHHHHHHH-TTEECCCCCGGGEEESCCCEEE-EEC----CEEEEESCCCEEECCCSSCEETTSCCCSSCSCGGGCCHHHH
T ss_pred             HHHHHHHH-CCCcCCCCCHHHEEEecccccc-ccCCccccccccccCCCceEeeCcccccCccccccccCCccccChHHh
Confidence            99999999 9999999999999998753100 000000000000011269999999998755431  2234458999999


Q ss_pred             CCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHH---HHHHHhh---------------------------------
Q 013230          359 SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVY---LVDMLLL---------------------------------  402 (447)
Q Consensus       359 ~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~---~~~~l~~---------------------------------  402 (447)
                      .+...+.+.|||+ +|.+.++++.|..|+........   +...+..                                 
T Consensus       207 ~~~~~~~~~Di~s-lG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (339)
T 1z57_A          207 LALGWSQPCDVWS-IGCILIEYYLGFTVFPTHDSKEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVS  285 (339)
T ss_dssp             TTSCCCTHHHHHH-HHHHHHHHHHSSCSCCCSCHHHHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHH
T ss_pred             hCCCCCcchhhHH-HHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhh
Confidence            9888888889999 99999999999888754322211   1111100                                 


Q ss_pred             ------ccCCCCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCC
Q 013230          403 ------KKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       403 ------~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~  442 (447)
                            ..........++++++||++||..|     |++|+|+||||+.+.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~  336 (339)
T 1z57_A          286 RACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALKHPFFDLLK  336 (339)
T ss_dssp             HHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTSGGGGGGG
T ss_pred             hcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhcCHHHHHHh
Confidence                  0001112345788999999999999     999999999998763

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=3.4e-36  Score=304.24  Aligned_cols=245  Identities=16%  Similarity=0.119  Sum_probs=180.6

Q ss_pred             CcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||.||+|+      .||+|++.....     ......+.+.+|+.+++.+..++|     ||    ||+
T Consensus        75 y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~-----~~~~~~~~~~~E~~~l~~l~~l~h-----pn----iv~  140 (377)
T 3byv_A           75 LVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTER-----PPSNAIKQMKEEVLRLRLLRGIKN-----QK----QAK  140 (377)
T ss_dssp             EEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC------CCTTHHHHHHHHHHGGGGSTTCCS-----HH----HHH
T ss_pred             EEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccc-----cchHHHHHHHHHHHHHHhccccCC-----HH----HHH
Confidence            4999999999999999997      399999875422     223345778999977777765444     66    998


Q ss_pred             ee-------eEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCC-----ceEEEEEEecCccchhhhhc----CCH--
Q 013230          208 MF-------EIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPEN-----QRYIVFVLQHGGKDLESFVL----LNI--  269 (447)
Q Consensus       208 l~-------~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ivmE~~~gG~~L~~~i~----l~~--  269 (447)
                      ++       +++...+..                  .....+.+++     ..|+||||+ +| +|.+++.    +++  
T Consensus       141 ~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~i~~~~lv~E~~-~g-~L~~~l~~~~~~~~~~  200 (377)
T 3byv_A          141 VHLRFIFPFDLVKDPQKK------------------KMIRVRLDERDMWVLSRFFLYPRM-QS-NLQTFGEVLLSHSSTH  200 (377)
T ss_dssp             HHHCBCCCSEEEECTTSC------------------SEEEC------CEEESEEEEEECC-SE-EHHHHHHHHHHTTTTT
T ss_pred             HHhhhhhhhhhhhccCCc------------------cccccccCCCceEEEEEEEEEecc-CC-CHHHHHHhcccccccc
Confidence            88       443221100                  0000000111     378999999 57 9999886    555  


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC
Q 013230          270 -----NEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE  344 (447)
Q Consensus       270 -----~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~  344 (447)
                           ..+..++.||+.||+|||+ +||+||||||+|||++.++                    .+||+|||+|+.....
T Consensus       201 ~~l~~~~~~~i~~qi~~aL~~LH~-~~ivHrDikp~NIll~~~~--------------------~~kL~DFG~a~~~~~~  259 (377)
T 3byv_A          201 KSLVHHARLQLTLQVIRLLASLHH-YGLVHTYLRPVDIVLDQRG--------------------GVFLTGFEHLVRDGAR  259 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-TTEECSCCCGGGEEECTTC--------------------CEEECCGGGCEETTCE
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHh-CCeecCCCCHHHEEEcCCC--------------------CEEEEechhheecCCc
Confidence                 7788899999999999999 9999999999999999887                    7999999999875432


Q ss_pred             --CEEEEecCCCCCCCCCC-----------CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCcc
Q 013230          345 --DIFFLDLSQDPELFSGP-----------KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSK  411 (447)
Q Consensus       345 --g~i~~~~~~~pelf~g~-----------~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~  411 (447)
                        .... ..|++||++.+.           ..+.+.|||+ +|++.+++++|..|+.........      ...+.....
T Consensus       260 ~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwS-lG~il~elltg~~Pf~~~~~~~~~------~~~~~~~~~  331 (377)
T 3byv_A          260 VVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWA-LGLVIYWIWCADLPITKDAALGGS------EWIFRSCKN  331 (377)
T ss_dssp             EECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHH-HHHHHHHHHHSSCCC------CCS------GGGGSSCCC
T ss_pred             ccCCCC-cCccChhhhcccccccccccccccCChhhhHHH-HHHHHHHHHHCCCCCcccccccch------hhhhhhccC
Confidence              1122 568999999876           5677789999 999999999999998653221110      112233356


Q ss_pred             chHHHHHHHHHhcccc-----CHHHHHcCCCCCCC
Q 013230          412 DERDLRSLKKRLDKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       412 ~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~  441 (447)
                      +++++++||.+||..|     |+.|+++||||+++
T Consensus       332 ~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~  366 (377)
T 3byv_A          332 IPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQL  366 (377)
T ss_dssp             CCHHHHHHHHHHTCSSGGGCCCHHHHHTSHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCchhCCCHHHHhhChHHHHH
Confidence            8899999999999999     99999999999764

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=7.7e-36  Score=293.35  Aligned_cols=241  Identities=19%  Similarity=0.177  Sum_probs=189.5

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|++      ||+|++.....     ........+.+|+.+++.++|        ||    |++
T Consensus        14 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~~~~~~E~~~l~~l~h--------p~----iv~   76 (311)
T 3ork_A           14 YELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLA-----RDPSFYLRFRREAQNAAALNH--------PA----IVA   76 (311)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTT-----TSHHHHHHHHHHHTTCCCCCC--------TT----BCC
T ss_pred             EEEEEEEccCCCEEEEEEEECCCCceEEEEEeCcccc-----CCHHHHHHHHHHHHHHHcCCC--------CC----cce
Confidence            39999999999999999983      99999875432     223344678899999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++...+..                          ....|+||||+.|| +|.+++.    +++..++.++.||+.||
T Consensus        77 ~~~~~~~~~~~--------------------------~~~~~lv~e~~~g~-~L~~~l~~~~~~~~~~~~~~~~qi~~~l  129 (311)
T 3ork_A           77 VYDTGEAETPA--------------------------GPLPYIVMEYVDGV-TLRDIVHTEGPMTPKRAIEVIADACQAL  129 (311)
T ss_dssp             EEEEEEEEETT--------------------------EEEEEEEEECCCEE-EHHHHHHHHCSCCHHHHHHHHHHHHHHH
T ss_pred             EEEeeeccCCC--------------------------CcccEEEEecCCCC-CHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            99997653311                          12369999999987 9999986    89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC--------EEEEecCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED--------IFFLDLSQDP  355 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g--------~i~~~~~~~p  355 (447)
                      +|||+ .||+||||||+|||++.++                    .+||+|||+|+.....+        ......|++|
T Consensus       130 ~~lH~-~~ivH~dlkp~Nil~~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aP  188 (311)
T 3ork_A          130 NFSHQ-NGIIHRDVKPANIMISATN--------------------AVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSP  188 (311)
T ss_dssp             HHHHH-TTCCCCCCCGGGEEEETTS--------------------CEEECCCSCC------------------CCTTCCH
T ss_pred             HHHHH-CCCCcCCCCHHHEEEcCCC--------------------CEEEeeccCcccccccccccccccccCcCcccCCH
Confidence            99999 9999999999999999887                    79999999998654331        2234558999


Q ss_pred             CCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc-----C
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN-----S  428 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d-----s  428 (447)
                      |.+.+...+.+.|||+ +|.+.+++++|..||...................+.  ...+++++.+||.+||..|     +
T Consensus       189 E~~~~~~~~~~~Di~s-lG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~  267 (311)
T 3ork_A          189 EQARGDSVDARSDVYS-LGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQ  267 (311)
T ss_dssp             HHHHTCCCCHHHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCHHHHSTTCCHHHHHHHHHHTCSSGGGSCS
T ss_pred             HHhcCCCCCchHhHHH-HHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCCCcccccCCCCHHHHHHHHHHHhcCHhhChh
Confidence            9998877778889999 999999999999998765444443443322211111  2357899999999999999     8


Q ss_pred             HHHHHcCCCCCC
Q 013230          429 AKEAIFDPFFSD  440 (447)
Q Consensus       429 a~elL~HPff~~  440 (447)
                      +.++++|+|++.
T Consensus       268 ~~~~l~~~l~~~  279 (311)
T 3ork_A          268 TAAEMRADLVRV  279 (311)
T ss_dssp             SHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence            999999999863

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=1.3e-34  Score=285.13  Aligned_cols=238  Identities=18%  Similarity=0.195  Sum_probs=188.8

Q ss_pred             CCcceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          133 DPENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      +|++.++||+|+||.||+|+    .||+|++....      ......+.+.+|+.++++++|        ||    |+++
T Consensus        38 ~y~i~~~lG~G~~g~V~~~~~~~~~vavK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------p~----iv~~   99 (309)
T 3p86_A           38 DLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQD------FHAERVNEFLREVAIMKRLRH--------PN----IVLF   99 (309)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTEEEEEEEECCCC------CSHHHHHHHHHHHHHHHHCCC--------TT----BCCE
T ss_pred             HceeeeEeecCCCeEEEEEEECCCcEEEEEecCCC------CCHHHHHHHHHHHHHHHhCCC--------CC----EeeE
Confidence            34999999999999999997    49999987442      223344678999999999998        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------CCHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------LNINEARSLLVQVTA  281 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------l~~~~~~~i~~Qil~  281 (447)
                      ++++.                              ..+.+|+||||+.+| +|.+++.       +++..++.++.||+.
T Consensus       100 ~~~~~------------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~i~~qi~~  148 (309)
T 3p86_A          100 MGAVT------------------------------QPPNLSIVTEYLSRG-SLYRLLHKSGAREQLDERRRLSMAYDVAK  148 (309)
T ss_dssp             EEEEC------------------------------STTCCEEEEECCTTC-BHHHHHHSTTHHHHSCHHHHHHHHHHHHH
T ss_pred             EEEEE------------------------------ECCceEEEEecCCCC-cHHHHHhhcCCCCCCCHHHHHHHHHHHHH
Confidence            99853                              256689999999988 9999875       899999999999999


Q ss_pred             HHHHHHHhCC--eeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCC
Q 013230          282 GLAVAEAAYE--FEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQD  354 (447)
Q Consensus       282 gL~ylH~~~~--iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~  354 (447)
                      ||+|||+ .|  |+||||||+|||++.++                    .+||+|||+|+.....     .......|++
T Consensus       149 aL~~LH~-~~~~ivH~Dikp~NIll~~~~--------------------~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~a  207 (309)
T 3p86_A          149 GMNYLHN-RNPPIVHRNLKSPNLLVDKKY--------------------TVKVCDFGLSRLKASTFLSSKSAAGTPEWMA  207 (309)
T ss_dssp             HHHHHHT-SSSCCCCTTCCGGGEEECTTC--------------------CEEECCCC-----------------CCTTSC
T ss_pred             HHHHHHc-CCCCEECCCCChhhEEEeCCC--------------------cEEECCCCCCccccccccccccCCCCccccC
Confidence            9999999 99  99999999999999887                    7999999999865433     2234456999


Q ss_pred             CCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CH
Q 013230          355 PELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SA  429 (447)
Q Consensus       355 pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa  429 (447)
                      ||.+.+.....+.|||+ +|.+.++++++..|+...................+.+..+++++.+||++||..|     |+
T Consensus       208 PE~~~~~~~~~~~Diws-lG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~  286 (309)
T 3p86_A          208 PEVLRDEPSNEKSDVYS-FGVILWELATLQQPWGNLNPAQVVAAVGFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSF  286 (309)
T ss_dssp             HHHHTTCCCCTTHHHHH-HHHHHHHHHHCCCTTTTSCHHHHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             hhhhcCCCCCchhhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHccCChhhCcCH
Confidence            99999888888889999 9999999999999997655444444443334455556778999999999999999     99


Q ss_pred             HHHHc--CCCCCCC
Q 013230          430 KEAIF--DPFFSDL  441 (447)
Q Consensus       430 ~elL~--HPff~~~  441 (447)
                      +|+++  +++++..
T Consensus       287 ~~ll~~L~~~~~~~  300 (309)
T 3p86_A          287 ATIMDLLRPLIKSA  300 (309)
T ss_dssp             HHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHhC
Confidence            99987  5665543

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=7.1e-35  Score=285.11  Aligned_cols=239  Identities=19%  Similarity=0.213  Sum_probs=190.3

Q ss_pred             hhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCC
Q 013230          127 LFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLN  200 (447)
Q Consensus       127 ~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n  200 (447)
                      +.++|   ++++.||+|+||.||+|++      ||+|++.....        ...+.+.+|+.+++.++|        ||
T Consensus         7 ~~~~y---~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--------~~~~~~~~e~~~l~~l~h--------~~   67 (304)
T 2jam_A            7 IRKTF---IFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPA--------FRDSSLENEIAVLKKIKH--------EN   67 (304)
T ss_dssp             HHHHE---EEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC--------------HHHHHHHHHHHCCC--------TT
T ss_pred             hhccc---eeeeeccCCCCceEEEEEECCCCCEEEEEEEecccc--------cchHHHHHHHHHHHhCCC--------CC
Confidence            34556   9999999999999999973      99999874421        123567899999999988        88


Q ss_pred             cccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHH
Q 013230          201 ACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLL  276 (447)
Q Consensus       201 ~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~  276 (447)
                          |+++++++..                              .+.+|+||||+.+| +|.+++.    +++..++.++
T Consensus        68 ----i~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~  112 (304)
T 2jam_A           68 ----IVTLEDIYES------------------------------TTHYYLVMQLVSGG-ELFDRILERGVYTEKDASLVI  112 (304)
T ss_dssp             ----BCCEEEEEEC------------------------------SSEEEEEECCCCSC-BHHHHHHHHSCCCHHHHHHHH
T ss_pred             ----eeehhhhccc------------------------------CCEEEEEEEcCCCc-cHHHHHHHcCCCCHHHHHHHH
Confidence                9999998543                              56799999999988 9988875    8999999999


Q ss_pred             HHHHHHHHHHHHhCCeeeccCCCCCEEEe---cCCCccccccccCcccccccCCCcEEEeeccceeecCCCC---EEEEe
Q 013230          277 VQVTAGLAVAEAAYEFEHRDLHWGNVLLS---RNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED---IFFLD  350 (447)
Q Consensus       277 ~Qil~gL~ylH~~~~iiHrDLKpeNILl~---~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g---~i~~~  350 (447)
                      .||+.||+|||+ .||+||||||+|||+.   .++                    .+||+|||+++......   .....
T Consensus       113 ~qi~~~l~~lH~-~~i~H~dikp~NIl~~~~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~  171 (304)
T 2jam_A          113 QQVLSAVKYLHE-NGIVHRDLKPENLLYLTPEENS--------------------KIMITDFGLSKMEQNGIMSTACGTP  171 (304)
T ss_dssp             HHHHHHHHHHHH-TTCCCCSCCGGGCEESSSSTTC--------------------CEEBCSCSTTCCCCCBTTHHHHSCC
T ss_pred             HHHHHHHHHHHH-CCccccCCCHHHEEEecCCCCC--------------------CEEEccCCcceecCCCccccccCCC
Confidence            999999999999 9999999999999994   443                    79999999998654321   11234


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCC--CCccchHHHHHHHHHhcccc-
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFD--RSSKDERDLRSLKKRLDKYN-  427 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~--~~~~~s~~l~dLl~~mL~~d-  427 (447)
                      .|++||.+.+.....+.|+|+ +|.+.++++.+..|+...........+......++  ....+++++++||.+||..| 
T Consensus       172 ~y~aPE~~~~~~~~~~~Di~s-lG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp  250 (304)
T 2jam_A          172 GYVAPEVLAQKPYSKAVDCWS-IGVITYILLCGYPPFYEETESKLFEKIKEGYYEFESPFWDDISESAKDFICHLLEKDP  250 (304)
T ss_dssp             CBCCTTTBSSCSCCHHHHHHH-HHHHHHHHHHSSCTTTTSCHHHHHHHHHHCCCCCCTTTTTTSCHHHHHHHHHHHCSST
T ss_pred             CccChHHhccCCCCchhhHHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCccccccCCHHHHHHHHHHcCCCh
Confidence            589999999877777889999 99999999999999876544333333332222222  23567899999999999999 


Q ss_pred             ----CHHHHHcCCCCCCC
Q 013230          428 ----SAKEAIFDPFFSDL  441 (447)
Q Consensus       428 ----sa~elL~HPff~~~  441 (447)
                          |++|+|+||||++.
T Consensus       251 ~~Rps~~~~l~h~~~~~~  268 (304)
T 2jam_A          251 NERYTCEKALSHPWIDGN  268 (304)
T ss_dssp             TTSCCHHHHHTSHHHHSS
T ss_pred             hHCcCHHHHhcCccccCC
Confidence                99999999999754

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=6.2e-35  Score=295.60  Aligned_cols=261  Identities=16%  Similarity=0.198  Sum_probs=182.3

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|++++.||+|+||.||+|++      ||+|++.....            ...+|+.+++.++|        ||    ||
T Consensus         8 ~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~------------~~~~E~~il~~l~h--------pn----Iv   63 (383)
T 3eb0_A            8 KYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR------------YKNRELDIMKVLDH--------VN----II   63 (383)
T ss_dssp             TEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT------------SCCHHHHHHTTCCC--------TT----BC
T ss_pred             eEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc------------hHHHHHHHHHHcCC--------CC----cc
Confidence            359999999999999999973      99998874421            12379999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHH---hhhcccccCCCCCCC-----CCCCCCceEEEEEEecCccchhhhhc--------CCHH
Q 013230          207 EMFEIKVCQGPYDAALIQA---WEDWDDKHCSENDNP-----KEFPENQRYIVFVLQHGGKDLESFVL--------LNIN  270 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~  270 (447)
                      +++++|...+.........   ...+.......+.+.     .......+|+||||+. | +|.+++.        +++.
T Consensus        64 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~-~L~~~l~~~~~~~~~l~~~  141 (383)
T 3eb0_A           64 KLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-D-TLHKVLKSFIRSGRSIPMN  141 (383)
T ss_dssp             CEEEEEEEC-------------------------------------CCEEEEEECCCS-E-EHHHHHHHHHHTTCCCCHH
T ss_pred             chhheeeecCcccccccccccccccccccccccccccccccccCCCceEEEEEEecCC-c-cHHHHHHHHHhcCCCCCHH
Confidence            9999987654211000000   000000000000000     0023456899999998 5 6666553        8999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEec-CCCccccccccCcccccccCCCcEEEeeccceeecCCCC----
Q 013230          271 EARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSR-NDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----  345 (447)
Q Consensus       271 ~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~-~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----  345 (447)
                      .++.++.||+.||+|||+ .||+||||||+|||++. ++                    .+||+|||+|+......    
T Consensus       142 ~~~~i~~qi~~aL~~LH~-~gi~H~Dikp~Nil~~~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~  200 (383)
T 3eb0_A          142 LISIYIYQLFRAVGFIHS-LGICHRDIKPQNLLVNSKDN--------------------TLKLCDFGSAKKLIPSEPSVA  200 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TTEECSCCCGGGEEEETTTT--------------------EEEECCCTTCEECCTTSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHH-CcCccCccCHHHEEEcCCCC--------------------cEEEEECCCCcccCCCCCCcC
Confidence            999999999999999999 99999999999999985 44                    79999999998754332    


Q ss_pred             EEEEecCCCCCCCCCCC-CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh-----------------ccCCC
Q 013230          346 IFFLDLSQDPELFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL-----------------KKTFD  407 (447)
Q Consensus       346 ~i~~~~~~~pelf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~-----------------~~~~~  407 (447)
                      .+....|++||++.+.. .+.+.|||+ +|++.++++.|..||........+..++..                 ...++
T Consensus       201 ~~~t~~y~aPE~~~~~~~~~~~~Diws-lG~il~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~  279 (383)
T 3eb0_A          201 YICSRFYRAPELMLGATEYTPSIDLWS-IGCVFGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFP  279 (383)
T ss_dssp             CCCCSSCCCHHHHTTCSSCCTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCC
T ss_pred             cccCCCccCHHHhcCCCCCCcchhhhh-HHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCC
Confidence            12344589999887754 566779999 999999999999988765333333332210                 00111


Q ss_pred             ----------CCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCC
Q 013230          408 ----------RSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       408 ----------~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~  441 (447)
                                .+...++++++||++||++|     ||.|+|+||||+++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~  328 (383)
T 3eb0_A          280 TLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAMAHPFFDHL  328 (383)
T ss_dssp             CCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGHHH
T ss_pred             ccCcccHHhhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhcCHHHHHH
Confidence                      12347889999999999999     99999999999754

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=1.1e-34  Score=290.60  Aligned_cols=251  Identities=20%  Similarity=0.227  Sum_probs=185.8

Q ss_pred             CCcceEEeccccceEEEEec-----eeEEEEEecCCCcccc---cccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          133 DPENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVN---GEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~---~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      .|++.+.||+|+||.||+|.     .||+|++.........   .......+.+.+|+.+++.++|        ||    
T Consensus        23 ~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h--------~~----   90 (362)
T 3pg1_A           23 PYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHH--------PN----   90 (362)
T ss_dssp             SCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCC--------TT----
T ss_pred             ceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCC--------cC----
Confidence            35999999999999999996     3999988643221000   0111223678999999999998        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQV  279 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qi  279 (447)
                      |+++++++...+.                         .....+|+||||+. | +|.+++.     +++..++.++.||
T Consensus        91 iv~~~~~~~~~~~-------------------------~~~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~~~~~~~~~qi  143 (362)
T 3pg1_A           91 ILGLRDIFVHFEE-------------------------PAMHKLYLVTELMR-T-DLAQVIHDQRIVISPQHIQYFMYHI  143 (362)
T ss_dssp             BCCCSEEEEECCT-------------------------TTCCEEEEEEECCS-E-EHHHHHHCTTSCCCHHHHHHHHHHH
T ss_pred             ccceeeeEEeccC-------------------------CCcceEEEEEccCC-C-CHHHHHHhcccCCCHHHHHHHHHHH
Confidence            9999999765321                         12356899999998 5 7777664     8999999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDP  355 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~p  355 (447)
                      +.||.|||+ .||+||||||+|||++.++                    .+||+|||+|+......    ......|++|
T Consensus       144 ~~~l~~lH~-~~ivH~Dlkp~NIl~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aP  202 (362)
T 3pg1_A          144 LLGLHVLHE-AGVVHRDLHPGNILLADNN--------------------DITICDFNLAREDTADANKTHYVTHRWYRAP  202 (362)
T ss_dssp             HHHHHHHHH-TTCCCCCCCGGGEEECTTC--------------------CEEECCTTC---------------CGGGCCH
T ss_pred             HHHHHHHHH-CcCEecCCChHHEEEcCCC--------------------CEEEEecCcccccccccccceecccceecCc
Confidence            999999999 9999999999999999887                    79999999998644332    2333458999


Q ss_pred             CCCCC-CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh----------------------c--cCCCC--
Q 013230          356 ELFSG-PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL----------------------K--KTFDR--  408 (447)
Q Consensus       356 elf~g-~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~----------------------~--~~~~~--  408 (447)
                      |++.+ .....+.|+|+ +|++.++++++..|+........+..+...                      .  ...+.  
T Consensus       203 E~~~~~~~~~~~~Diws-lG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (362)
T 3pg1_A          203 ELVMQFKGFTKLVDMWS-AGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARA  281 (362)
T ss_dssp             HHHTTCTTCCTHHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCC
T ss_pred             HHhcCCCCCCcHhHHHh-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhh
Confidence            98877 45566679999 999999999999998764333332222110                      0  00010  


Q ss_pred             ----CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          409 ----SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       409 ----~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                          ....++++++||.+||.+|     |+.|+|+||||+++..+
T Consensus       282 ~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~~  326 (362)
T 3pg1_A          282 WTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRHPYFESLFDP  326 (362)
T ss_dssp             HHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGTTTCCG
T ss_pred             HHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcCchhhhccCc
Confidence                2245789999999999999     99999999999988554

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=3.3e-35  Score=291.33  Aligned_cols=242  Identities=21%  Similarity=0.288  Sum_probs=186.0

Q ss_pred             hhhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCC
Q 013230          126 DLFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTL  199 (447)
Q Consensus       126 ~~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~  199 (447)
                      ..+++|   ++++.||+|+||.||+|++      ||+|++....      ......+.+.+|+.+++.++|        |
T Consensus        22 ~~~~~y---~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------~   84 (331)
T 4aaa_A           22 QSMEKY---ENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESD------DDKMVKKIAMREIKLLKQLRH--------E   84 (331)
T ss_dssp             BCGGGE---EEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCS------SCHHHHHHHHHHHHHHHHCCC--------T
T ss_pred             hhhhhh---eeeeEEeecCCEEEEEEEECCCCceEEEEEEecCC------CchHHHHHHHHHHHHHhhCCC--------C
Confidence            344555   9999999999999999974      9999886442      222334567899999999998        8


Q ss_pred             CcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHH
Q 013230          200 NACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSL  275 (447)
Q Consensus       200 n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i  275 (447)
                      |    |+++++++..                              .+.+|+||||+.+| +|..+..    +++..++.+
T Consensus        85 ~----iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~l~~~~~~~~~~~~~~~~~~  129 (331)
T 4aaa_A           85 N----LVNLLEVCKK------------------------------KKRWYLVFEFVDHT-ILDDLELFPNGLDYQVVQKY  129 (331)
T ss_dssp             T----BCCEEEEEEE------------------------------TTEEEEEEECCSEE-HHHHHHHSTTCCCHHHHHHH
T ss_pred             C----EeeEEEEeec------------------------------CCEEEEEEecCCcc-hHHHHHhhccCCCHHHHHHH
Confidence            8    9999999654                              56799999999977 8887754    899999999


Q ss_pred             HHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----EEEe
Q 013230          276 LVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----FFLD  350 (447)
Q Consensus       276 ~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----i~~~  350 (447)
                      +.||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+++.....+.     ....
T Consensus       130 ~~qi~~~l~~LH~-~~ivH~dlkp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~t~  188 (331)
T 4aaa_A          130 LFQIINGIGFCHS-HNIIHRDIKPENILVSQSG--------------------VVKLCDFGFARTLAAPGEVYDDEVATR  188 (331)
T ss_dssp             HHHHHHHHHHHHH-TTCCCCCCCGGGEEECTTS--------------------CEEECCCTTC------------CCCCC
T ss_pred             HHHHHHHHHHHHH-CCEEccCcChheEEEcCCC--------------------cEEEEeCCCceeecCCccccCCCcCCc
Confidence            9999999999999 9999999999999999887                    799999999987544322     2234


Q ss_pred             cCCCCCCCCCC-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh-------------------ccCCCC--
Q 013230          351 LSQDPELFSGP-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL-------------------KKTFDR--  408 (447)
Q Consensus       351 ~~~~pelf~g~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~-------------------~~~~~~--  408 (447)
                      .|++||++.+. ....+.|||+ +|.+.++++.|..|+........+..+...                   ...++.  
T Consensus       189 ~y~aPE~~~~~~~~~~~~Di~s-lG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (331)
T 4aaa_A          189 WYRAPELLVGDVKYGKAVDVWA-IGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIK  267 (331)
T ss_dssp             TTCCHHHHTTCTTCCTHHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCS
T ss_pred             cccCcccccCCCCcchHHHHHH-HHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhccccccccCcccc
Confidence            48899998775 4566779999 999999999999888654322222221110                   001110  


Q ss_pred             --------CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCC
Q 013230          409 --------SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       409 --------~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~  441 (447)
                              ...+++++++||++||..|     |++|+|+||||+..
T Consensus       268 ~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~f~~~  313 (331)
T 4aaa_A          268 EREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHHDFFQMD  313 (331)
T ss_dssp             SCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHGG
T ss_pred             ccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcCchhccC
Confidence                    1246899999999999999     99999999999753

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.1e-35  Score=295.09  Aligned_cols=238  Identities=20%  Similarity=0.201  Sum_probs=187.2

Q ss_pred             CcceEEeccccceEEEEece---------eEEEEEecCCCcccccccccchHHHHHHHHHHHhcc-ccccCCCCCCCccc
Q 013230          134 PENIVKVGEGTFGEAFLAGN---------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN-HLRRNEGDTLNACT  203 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~---------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~n~~~  203 (447)
                      |++++.||+|+||.||+|++         ||+|++......    ......+.+.+|+.+++.+. |        ||   
T Consensus        56 y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~----~~~~~~~~~~~E~~~l~~l~~h--------~~---  120 (355)
T 1vzo_A           56 FELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIV----QKAKTTEHTRTERQVLEHIRQS--------PF---  120 (355)
T ss_dssp             EEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEE----EEESSGGGCCCHHHHHHHHHTC--------TT---
T ss_pred             eEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhh----hhhhHHHHHHHHHHHHHHccCC--------Cc---
Confidence            49999999999999999863         999988643210    11223345678999999995 5        66   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHH
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQV  279 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qi  279 (447)
                       |+++++++..                              ++.+|+||||+.+| +|.+++.    +++..++.++.||
T Consensus       121 -iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~qi  168 (355)
T 1vzo_A          121 -LVTLHYAFQT------------------------------ETKLHLILDYINGG-ELFTHLSQRERFTEHEVQIYVGEI  168 (355)
T ss_dssp             -BCCEEEEEEE------------------------------TTEEEEEECCCCSC-BHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             -eeEEEEEEee------------------------------CceEEEEeecCCCC-CHHHHHHHcCCCCHHHHHHHHHHH
Confidence             9999998654                              56799999999988 9999876    8999999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------CEEEEecCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------DIFFLDLSQ  353 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g~i~~~~~~  353 (447)
                      +.||.|||+ .||+||||||+|||++.++                    .+||+|||+|+.....      .......|+
T Consensus       169 ~~aL~~LH~-~~ivH~Dlkp~NIll~~~~--------------------~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~  227 (355)
T 1vzo_A          169 VLALEHLHK-LGIIYRDIKLENILLDSNG--------------------HVVLTDFGLSKEFVADETERAYDFCGTIEYM  227 (355)
T ss_dssp             HHHHHHHHH-TTCCCCCCCGGGEEECTTS--------------------CEEESCSSEEEECCGGGGGGGCGGGSCCTTC
T ss_pred             HHHHHHHHH-CCcccCCCCHHHEEECCCC--------------------cEEEeeCCCCeecccCCCCcccCcccCcCcc
Confidence            999999999 9999999999999999887                    7999999999865322      112344589


Q ss_pred             CCCCCCCCC--CCchHHHHHhhccCCcccccCCCCCChh----HHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc
Q 013230          354 DPELFSGPK--GDKQFDTYRKMKKVTEDQWEGSFPKTNV----LWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       354 ~pelf~g~~--~~~~~di~s~lg~~~~~~~~~~~p~~~~----~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d  427 (447)
                      +||++.+..  ...+.|||+ +|++.+++++|..|+...    .........+  ....+.+..++..+++||++||..|
T Consensus       228 aPE~~~~~~~~~~~~~Dvws-lG~il~ell~g~~pf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~L~~d  304 (355)
T 1vzo_A          228 APDIVRGGDSGHDKAVDWWS-LGVLMYELLTGASPFTVDGEKNSQAEISRRIL--KSEPPYPQEMSALAKDLIQRLLMKD  304 (355)
T ss_dssp             CHHHHTTCC---CTHHHHHH-HHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHH--HCCCCCCTTSCHHHHHHHHHHTCSS
T ss_pred             ChhhhcCCCCCCCchhhHHH-HHHHHHHHHHCCCCCccCCccchHHHHHHHHh--ccCCCCCcccCHHHHHHHHHHhhhC
Confidence            999998632  455679999 999999999999888532    1122222222  2233445678999999999999999


Q ss_pred             ----------CHHHHHcCCCCCCCC
Q 013230          428 ----------SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 ----------sa~elL~HPff~~~~  442 (447)
                                |++|+++||||+++.
T Consensus       305 P~~R~~~~~~s~~ell~h~~f~~~~  329 (355)
T 1vzo_A          305 PKKRLGCGPRDADEIKEHLFFQKIN  329 (355)
T ss_dssp             GGGSTTSSTTTHHHHHTSGGGTTCC
T ss_pred             HHHhcCCCCCCHHHHHcCcchhcCC
Confidence                      799999999999764

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=6.7e-35  Score=294.25  Aligned_cols=244  Identities=18%  Similarity=0.244  Sum_probs=187.1

Q ss_pred             CcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |.+.+.||+|+||.||+|+      .||+|++....      ........+.+|+.+++.++|        ||    |++
T Consensus        44 y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------~n----iv~  105 (371)
T 4exu_A           44 YVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPF------QSEIFAKRAYRELLLLKHMQH--------EN----VIG  105 (371)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTT------SSHHHHHHHHHHHHHHHHCCC--------TT----BCC
T ss_pred             EEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccc------cchhHHHHHHHHHHHHHhcCC--------CC----chh
Confidence            4999999999999999996      39999987442      223345678899999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--CCHHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--LNINEARSLLVQVTAGLAV  285 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--l~~~~~~~i~~Qil~gL~y  285 (447)
                      +++++...+.                        ......+|+||||+. | +|.+++.  +++..++.++.||+.||+|
T Consensus       106 ~~~~~~~~~~------------------------~~~~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~~~i~~qi~~aL~~  159 (371)
T 4exu_A          106 LLDVFTPASS------------------------LRNFYDFYLVMPFMQ-T-DLQKIMGMEFSEEKIQYLVYQMLKGLKY  159 (371)
T ss_dssp             CSEEECSCSS------------------------STTCCCCEEEEECCC-E-EHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhheeccCC------------------------cccceeEEEEEcccc-c-cHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence            9999643221                        011123599999998 5 8888877  9999999999999999999


Q ss_pred             HHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--CEEEEecCCCCCCCCC-CC
Q 013230          286 AEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--DIFFLDLSQDPELFSG-PK  362 (447)
Q Consensus       286 lH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--g~i~~~~~~~pelf~g-~~  362 (447)
                      ||+ .||+||||||+|||++.++                    .+||+|||+|+.....  +.+....|++||++.+ ..
T Consensus       160 LH~-~~ivH~Dikp~NIll~~~~--------------------~~kL~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~  218 (371)
T 4exu_A          160 IHS-AGVVHRDLKPGNLAVNEDC--------------------ELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMH  218 (371)
T ss_dssp             HHH-TTCCCSCCCGGGEEECTTC--------------------CEEECSTTCC--------CTTCCCTTSCHHHHSCCSC
T ss_pred             HHH-CCCcCCCcCHHHeEECCCC--------------------CEEEEecCcccccccCcCCcccCccccCHHHhcCCCC
Confidence            999 9999999999999999987                    7999999999865443  1123445899998877 45


Q ss_pred             CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhcc-----------------------CCCC------Cccch
Q 013230          363 GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKK-----------------------TFDR------SSKDE  413 (447)
Q Consensus       363 ~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~-----------------------~~~~------~~~~s  413 (447)
                      .....|+|+ +|.+.+++++|..|+........+..++....                       ..+.      ....+
T Consensus       219 ~~~~~Diws-lG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (371)
T 4exu_A          219 YNQTVDIWS-VGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRAS  297 (371)
T ss_dssp             CCTTHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSC
T ss_pred             CCcHHhHHH-HHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhccccC
Confidence            666779999 99999999999999976544333333221000                       0000      12468


Q ss_pred             HHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          414 RDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       414 ~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                      +++++||++||++|     ||+|+|+||||+.+..
T Consensus       298 ~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~  332 (371)
T 4exu_A          298 PQAADLLEKMLELDVDKRLTAAQALTHPFFEPFRD  332 (371)
T ss_dssp             HHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTTCC
T ss_pred             hHHHHHHHHHCCCChhhcCCHHHHhcCcccccCCC
Confidence            99999999999999     9999999999997643

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=7.1e-35  Score=297.34  Aligned_cols=237  Identities=21%  Similarity=0.251  Sum_probs=169.1

Q ss_pred             eEEeccccceEEEEec--------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          137 IVKVGEGTFGEAFLAG--------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       137 ~~~LG~G~fG~V~~a~--------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      .++||+|+||.||+|+        .||+|++....          ....+.+|+.+|+.|+|        ||    ||++
T Consensus        26 g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~----------~~~~~~~E~~~l~~l~h--------pn----iv~~   83 (405)
T 3rgf_A           26 GCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG----------ISMSACREIALLRELKH--------PN----VISL   83 (405)
T ss_dssp             SCCCC-----EEEEEEESSSSCCCCEEEEECSSSS----------CCHHHHHHHHHHHHCCC--------TT----BCCC
T ss_pred             CcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC----------CCHHHHHHHHHHHhcCC--------CC----eeeE
Confidence            4589999999999997        28999886332          22467899999999998        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------------CCHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------------LNINEARSL  275 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------------l~~~~~~~i  275 (447)
                      ++++....                            ...+|+||||+. | +|.+++.             +++..++.+
T Consensus        84 ~~~~~~~~----------------------------~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i  133 (405)
T 3rgf_A           84 QKVFLSHA----------------------------DRKVWLLFDYAE-H-DLWHIIKFHRASKANKKPVQLPRGMVKSL  133 (405)
T ss_dssp             CEEEEETT----------------------------TTEEEEEEECCS-E-EHHHHHHHHHHHC-------CCHHHHHHH
T ss_pred             eeEEecCC----------------------------CCeEEEEEeCCC-C-CHHHHHHHhccccccccccCCCHHHHHHH
Confidence            99975422                            466999999997 5 7777664             899999999


Q ss_pred             HHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--------CEE
Q 013230          276 LVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--------DIF  347 (447)
Q Consensus       276 ~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--------g~i  347 (447)
                      +.||+.||+|||+ .||+||||||+|||+...+.                ....+||+|||+|+.....        ..+
T Consensus       134 ~~qi~~al~~LH~-~~ivH~Dlkp~NIll~~~~~----------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~  196 (405)
T 3rgf_A          134 LYQILDGIHYLHA-NWVLHRDLKPANILVMGEGP----------------ERGRVKIADMGFARLFNSPLKPLADLDPVV  196 (405)
T ss_dssp             HHHHHHHHHHHHH-TTCCCCCCCGGGEEECCSST----------------TTTCEEECCTTCCC----------------
T ss_pred             HHHHHHHHHHHHh-CCEeCCCcCHHHeEEecCCC----------------CCCcEEEEECCCceecCCCCcccccCCCce
Confidence            9999999999999 99999999999999943210                0017999999999875432        122


Q ss_pred             EEecCCCCCCCCCCC-CCchHHHHHhhccCCcccccCCCCCChhHH---------HHHHHHHHh--hcc-----------
Q 013230          348 FLDLSQDPELFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLW---------LVYLVDMLL--LKK-----------  404 (447)
Q Consensus       348 ~~~~~~~pelf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~---------~~~~~~~l~--~~~-----------  404 (447)
                      ....|++||++.+.. ...+.|||+ +|++.+++++|..||.....         ...+..++.  +..           
T Consensus       197 gt~~y~aPE~~~~~~~~~~~~DiwS-lG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~  275 (405)
T 3rgf_A          197 VTFWYRAPELLLGARHYTKAIDIWA-IGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKM  275 (405)
T ss_dssp             CCCTTCCHHHHTTCCSCCHHHHHHH-HHHHHHHHHHSSCTTCCCC------CCCCHHHHHHHHHHHCCCCTTTCGGGGGS
T ss_pred             ecCcccCchhhcCCCcccchhhhHH-HHHHHHHHHhCCCCCCCccccccccccchHHHHHHHHHhhCCCChhhcchhhcC
Confidence            344589999998744 566679999 99999999999988842110         011111110  000           


Q ss_pred             -------------CCCC----------CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          405 -------------TFDR----------SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       405 -------------~~~~----------~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                                   .+..          ....++++++||++||++|     ||+|+|+||||++...
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~hp~f~~~~~  342 (405)
T 3rgf_A          276 PEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYFLEDPL  342 (405)
T ss_dssp             TTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTSSSC
T ss_pred             cchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHhcChhhccCCC
Confidence                         0000          0112678999999999999     9999999999987644

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=2.5e-35  Score=295.30  Aligned_cols=237  Identities=16%  Similarity=0.191  Sum_probs=188.2

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|++      ||+|++....       .....+.+.+|+.+++.++|        ||    |++
T Consensus        35 y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------~~----iv~   95 (360)
T 3eqc_A           35 FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI-------KPAIRNQIIRELQVLHECNS--------PY----IVG   95 (360)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCC-------CHHHHHHHHHHHGGGGGCCC--------TT----BCC
T ss_pred             ceeeeeecCCCCeEEEEEEECCCCcEEEEEEecccc-------CHHHHHHHHHHHHHHHHCCC--------CC----EEE
Confidence            59999999999999999974      8999987542       23344678999999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++..                              ++.+|+||||+.|| +|.+++.    +++..++.++.||+.||
T Consensus        96 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~i~~~i~~~l  144 (360)
T 3eqc_A           96 FYGAFYS------------------------------DGEISICMEHMDGG-SLDQVLKKAGRIPEQILGKVSIAVIKGL  144 (360)
T ss_dssp             EEEEEEE------------------------------TTEEEEEECCCTTC-BHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             EeEEEEE------------------------------CCEEEEEEECCCCC-CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            9998654                              56699999999988 9999886    89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---CEEEEecCCCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---DIFFLDLSQDPELFSG  360 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---g~i~~~~~~~pelf~g  360 (447)
                      .|||+.+||+||||||+|||++.++                    .+||+|||+|+.....   .......|++||++.+
T Consensus       145 ~~lh~~~~i~H~dlkp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~  204 (360)
T 3eqc_A          145 TYLREKHKIMHRDVKPSNILVNSRG--------------------EIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQG  204 (360)
T ss_dssp             HHHHHHHCCCCSCCSGGGEEECTTC--------------------CEEECCCCCCHHHHHHC----CCCCTTCCHHHHTT
T ss_pred             HHHHHhCCEEcCCccHHHEEECCCC--------------------CEEEEECCCCcccccccccCCCCCCCeECHHHHcC
Confidence            9999834999999999999999987                    7999999999654221   2223455899999998


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhHHHHH-----------------------------------------HHHH
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVY-----------------------------------------LVDM  399 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~-----------------------------------------~~~~  399 (447)
                      ...+.+.|||+ +|.+.+++++|..|+........                                         ..+.
T Consensus       205 ~~~~~~~Di~s-lG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (360)
T 3eqc_A          205 THYSVQSDIWS-MGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDY  283 (360)
T ss_dssp             CCCSHHHHHHH-HHHHHHHHHHTSCCSSCCCHHHHHHHHC------------------------------CCCHHHHHHH
T ss_pred             CCCCchhhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCcccccccCCCCcccchhhhhH
Confidence            77778889999 99999999999988754211110                                         0011


Q ss_pred             HhhccCC-CCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCC
Q 013230          400 LLLKKTF-DRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       400 l~~~~~~-~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~  441 (447)
                      +...... .....++.++++||++||.+|     ||+|+|+||||+..
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~  331 (360)
T 3eqc_A          284 IVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRS  331 (360)
T ss_dssp             HHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSHHHHHH
T ss_pred             HhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhhChHhhcc
Confidence            1111111 112347889999999999999     99999999999754

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=2.2e-34  Score=278.05  Aligned_cols=245  Identities=18%  Similarity=0.203  Sum_probs=192.8

Q ss_pred             CcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|+      .||+|++......  ........+.+.+|+.+++.++|        ||    |++
T Consensus         7 y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~--~~~~~~~~~~~~~E~~~l~~l~h--------~~----i~~   72 (283)
T 3bhy_A            7 YEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLS--SSRRGVSREEIEREVNILREIRH--------PN----IIT   72 (283)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSST--TCSSSBCHHHHHHHHHHHHHCCC--------TT----BCC
T ss_pred             hhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhcccc--ccccchHHHHHHHHHHHHHhCCC--------CC----eee
Confidence            3999999999999999996      3999998765331  11122245778999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++..                              .+..|+||||+.+| +|.+++.    +++..++.++.||+.||
T Consensus        73 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~i~~~l  121 (283)
T 3bhy_A           73 LHDIFEN------------------------------KTDVVLILELVSGG-ELFDFLAEKESLTEDEATQFLKQILDGV  121 (283)
T ss_dssp             EEEEEEC------------------------------SSEEEEEEECCCSC-BHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             hhheecC------------------------------CCeEEEEEeecCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            9998543                              56699999999987 9999886    89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE----EEEecCCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI----FFLDLSQDPELFS  359 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~----i~~~~~~~pelf~  359 (447)
                      .|||+ .||+||||||+|||++.++.                ....+||+|||+++.......    .....|++||++.
T Consensus       122 ~~lH~-~~i~H~dl~p~Nil~~~~~~----------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~  184 (283)
T 3bhy_A          122 HYLHS-KRIAHFDLKPENIMLLDKNV----------------PNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVN  184 (283)
T ss_dssp             HHHHH-TTEECSCCSGGGEEESCSSS----------------SSCCEEECCCTTCEECC--------CCCGGGCCHHHHT
T ss_pred             HHHHh-CCccCCCCChHHEEEecCCC----------------CCCceEEEecccceeccCCCcccccCCCcCccCcceec
Confidence            99999 99999999999999987651                012699999999987654321    2233489999998


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc-----CHHHH
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN-----SAKEA  432 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d-----sa~el  432 (447)
                      +.....+.|+|+ +|.+.++++.+..|+..................++.  ....+.++++||++||..|     |+.|+
T Consensus       185 ~~~~~~~~Di~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~  263 (283)
T 3bhy_A          185 YEPLGLEADMWS-IGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQS  263 (283)
T ss_dssp             TCCCCTHHHHHH-HHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHH
T ss_pred             CCCCCcchhhhh-HHHHHHHHHHCCCCCCCcchHHHHHHhHhcccCCcchhcccCCHHHHHHHHHHccCCHhHCcCHHHH
Confidence            877778889999 999999999999998765443333333322222221  2356889999999999999     99999


Q ss_pred             HcCCCCCCC
Q 013230          433 IFDPFFSDL  441 (447)
Q Consensus       433 L~HPff~~~  441 (447)
                      ++||||+.+
T Consensus       264 l~h~~~~~~  272 (283)
T 3bhy_A          264 LEHSWIKAI  272 (283)
T ss_dssp             HHCHHHHHH
T ss_pred             HhCHHHHHH
Confidence            999999754

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=1.7e-34  Score=292.24  Aligned_cols=244  Identities=18%  Similarity=0.178  Sum_probs=184.1

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|++      ||+|++...         ......+.+|+.+++.+++..+      ..+++|++
T Consensus        56 y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~---------~~~~~~~~~e~~~l~~l~~~~~------~~~~~iv~  120 (382)
T 2vx3_A           56 YEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK---------KAFLNQAQIEVRLLELMNKHDT------EMKYYIVH  120 (382)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS---------HHHHHHHHHHHHHHHHHHHCSS------GGGGGBCC
T ss_pred             EEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc---------HHHHHHHHHHHHHHHHHHhccc------ccceeEEE
Confidence            49999999999999999963      999998632         2234667889999999875221      12445999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +++++..                              .+.+|+||||+. | +|.+++.      +++..++.++.||+.
T Consensus       121 ~~~~~~~------------------------------~~~~~lv~e~~~-~-~L~~~l~~~~~~~~~~~~~~~i~~qi~~  168 (382)
T 2vx3_A          121 LKRHFMF------------------------------RNHLCLVFEMLS-Y-NLYDLLRNTNFRGVSLNLTRKFAQQMCT  168 (382)
T ss_dssp             EEEEEEE------------------------------TTEEEEEEECCC-C-BHHHHHHHTTTSCCCHHHHHHHHHHHHH
T ss_pred             eeeeecc------------------------------CCceEEEEecCC-C-CHHHHHhhcCcCCCCHHHHHHHHHHHHH
Confidence            9998654                              567999999996 6 8888875      789999999999999


Q ss_pred             HHHHHHH-hCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--CEEEEecCCCCCCC
Q 013230          282 GLAVAEA-AYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--DIFFLDLSQDPELF  358 (447)
Q Consensus       282 gL~ylH~-~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--g~i~~~~~~~pelf  358 (447)
                      ||.|||+ ..||+||||||+|||++.+..                  ..+||+|||+|+.....  ..+....|++||++
T Consensus       169 al~~lH~~~~~ivHrDlkp~NIll~~~~~------------------~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~  230 (382)
T 2vx3_A          169 ALLFLATPELSIIHCDLKPENILLCNPKR------------------SAIKIVDFGSSCQLGQRIYQYIQSRFYRSPEVL  230 (382)
T ss_dssp             HHHHHTSTTTCEECCCCSGGGEEESSTTS------------------CCEEECCCTTCEETTCCCCSSCSCGGGCCHHHH
T ss_pred             HHHHhccCCCCEEcCCCCcccEEEecCCC------------------CcEEEEeccCceecccccccccCCccccChHHH
Confidence            9999993 289999999999999965321                  16999999999876543  22234458999999


Q ss_pred             CCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccC------------------C--------------
Q 013230          359 SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKT------------------F--------------  406 (447)
Q Consensus       359 ~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~------------------~--------------  406 (447)
                      .+...+.+.|||+ +|++.+++++|..||........+..+......                  +              
T Consensus       231 ~~~~~~~~~DiwS-lG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (382)
T 2vx3_A          231 LGMPYDLAIDMWS-LGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGTWNLKKTKDGK  309 (382)
T ss_dssp             TTCCCCTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTCTTHHHHEEECTTSCEEECCCCTTC
T ss_pred             cCCCCCcHHHHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhHHHHHHHHhccccccccccccccc
Confidence            9888888889999 999999999999998754333222222110000                  0              


Q ss_pred             ---CCC---------------------------ccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          407 ---DRS---------------------------SKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       407 ---~~~---------------------------~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                         ..+                           ...+++++|||++||++|     ||+|+|+||||++...
T Consensus       310 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~Rpta~e~L~hp~f~~~~~  381 (382)
T 2vx3_A          310 REYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFKKTAD  381 (382)
T ss_dssp             CCSCCTTCSCHHHHHTTTTTSGGGTTTTCTTCCHHHHHHHHHHHHHHTCSCTTTSCCHHHHTTSGGGCC---
T ss_pred             cccCCcchhhHHHHhhccccCCCccccccccccchhhHHHHHHHHHhcCCChhhCCCHHHHhcCcccccCCC
Confidence               000                           011258999999999999     9999999999998653

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=8.5e-35  Score=287.07  Aligned_cols=248  Identities=21%  Similarity=0.218  Sum_probs=183.8

Q ss_pred             hhhccCCCcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCC
Q 013230          127 LFSKYSDPENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLN  200 (447)
Q Consensus       127 ~~~~y~~~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n  200 (447)
                      ..++|   ++++.||+|+||.||+|+      .||+|++..................+.+|+.+++.++|        ||
T Consensus         8 l~~~y---~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h--------~~   76 (322)
T 2ycf_A            8 LRDEY---IMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNH--------PC   76 (322)
T ss_dssp             HHHHE---EEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCC--------TT
T ss_pred             hhhce---eEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCC--------CC
Confidence            34556   999999999999999996      39999987542110000111223457899999999988        88


Q ss_pred             cccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHH
Q 013230          201 ACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLL  276 (447)
Q Consensus       201 ~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~  276 (447)
                          |+++++++.                               .+..|+||||+.+| +|.+++.    +++..++.++
T Consensus        77 ----i~~~~~~~~-------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~  120 (322)
T 2ycf_A           77 ----IIKIKNFFD-------------------------------AEDYYIVLELMEGG-ELFDKVVGNKRLKEATCKLYF  120 (322)
T ss_dssp             ----BCCEEEEEE-------------------------------SSSEEEEEECCTTE-ETHHHHSTTCCCCHHHHHHHH
T ss_pred             ----CceEeeEEc-------------------------------CCceEEEEecCCCC-cHHHHHhccCCCCHHHHHHHH
Confidence                999999853                               23489999999988 9988875    8999999999


Q ss_pred             HHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecC
Q 013230          277 VQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLS  352 (447)
Q Consensus       277 ~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~  352 (447)
                      .||+.||+|||+ +||+||||||+|||++.++.                 ...+||+|||+++......    ......|
T Consensus       121 ~qi~~~l~~lH~-~~ivH~dlkp~NIl~~~~~~-----------------~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y  182 (322)
T 2ycf_A          121 YQMLLAVQYLHE-NGIIHRDLKPENVLLSSQEE-----------------DCLIKITDFGHSKILGETSLMRTLCGTPTY  182 (322)
T ss_dssp             HHHHHHHHHHHH-TTEECCCCSGGGEEESSSSS-----------------SCCEEECCCTTCEECCCCHHHHHHHSCCTT
T ss_pred             HHHHHHHHHHHH-CCeeccCCCHHHEEEecCCC-----------------CCeEEEccCccceecccccccccccCCcCc
Confidence            999999999999 99999999999999987651                 1259999999998865542    1123458


Q ss_pred             CCCCCCC---CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC----CccchHHHHHHHHHhcc
Q 013230          353 QDPELFS---GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR----SSKDERDLRSLKKRLDK  425 (447)
Q Consensus       353 ~~pelf~---g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~----~~~~s~~l~dLl~~mL~  425 (447)
                      ++||++.   +.....+.|||+ +|.+.++++++..|+........+...+. ...+..    ...++.++++||++||.
T Consensus       183 ~aPE~~~~~~~~~~~~~~Di~s-lG~il~~l~~g~~pf~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~l~  260 (322)
T 2ycf_A          183 LAPEVLVSVGTAGYNRAVDCWS-LGVILFICLSGYPPFSEHRTQVSLKDQIT-SGKYNFIPEVWAEVSEKALDLVKKLLV  260 (322)
T ss_dssp             CCHHHHHHTTTTTCTTHHHHHH-HHHHHHHHHHSSCSSCSTTCSSCHHHHHH-HTCCCCCHHHHTTSCHHHHHHHHHHSC
T ss_pred             cCchhhccCCCCCCCchhhHHH-HHHHHHHHHhCCCCCcccchHHHHHHHHH-hCccccCchhhhhcCHHHHHHHHHHcc
Confidence            8999873   344556779999 99999999999988864321111111111 111111    23468999999999999


Q ss_pred             cc-----CHHHHHcCCCCCCC
Q 013230          426 YN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       426 ~d-----sa~elL~HPff~~~  441 (447)
                      .|     |++|+|+||||++.
T Consensus       261 ~dP~~Rps~~~~l~h~~~~~~  281 (322)
T 2ycf_A          261 VDPKARFTTEEALRHPWLQDE  281 (322)
T ss_dssp             SSTTTSCCHHHHHTSGGGCCH
T ss_pred             cCHhhCCCHHHHhhCcCcCCH
Confidence            99     99999999999864

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=1.9e-35  Score=298.03  Aligned_cols=260  Identities=12%  Similarity=0.067  Sum_probs=178.4

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||.||+|++      ||+|++.....     ......+.+.+|+.+++.|.+ +|     ||....++.
T Consensus        64 y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~~~~~~E~~~~~~l~~-~h-----p~iv~~~~~  132 (371)
T 3q60_A           64 LKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAE-----NSRSELERLHEATFAAARLLG-ES-----PEEARDRRR  132 (371)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCST-----THHHHHHHHHHHHHHHHHHHC----------------C
T ss_pred             eeeeeeccCCCCEEEEEEEECCCCceeEEEEEEeccc-----ccccHHHHHHHHHHHHHHhcc-cC-----hhhhhhcee
Confidence            59999999999999999973      99999986532     233345677889887777764 33     773222333


Q ss_pred             ee---eEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHH------H
Q 013230          208 MF---EIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEA------R  273 (447)
Q Consensus       208 l~---~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~------~  273 (447)
                      ++   +++...|...         +.    ...+.........+|||||||. | +|.+++.     ++....      .
T Consensus       133 ~~~p~d~~~~~~~~~---------~~----~~~~~~~~~~~~~~~lv~e~~~-~-~L~~~l~~~~~~~~~~~~~~~~vk~  197 (371)
T 3q60_A          133 LLLPSDAVAVQSQPP---------FA----QLSPGQDDYAVANYLLLMPAAS-V-DLELLFSTLDFVYVFRGDEGILALH  197 (371)
T ss_dssp             BCCCCEEEEETTSCS---------SS----BCSCC---CCEEEEEEEECCCS-E-EHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred             EEeeehheecCCCCC---------ee----eccCCcccceeeeEEEEecCCC-C-CHHHHHHHhccccchhhhhhhhhHH
Confidence            33   5544433100         00    0000000111245899999998 7 9999986     444444      5


Q ss_pred             HHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC--EEEEec
Q 013230          274 SLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED--IFFLDL  351 (447)
Q Consensus       274 ~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g--~i~~~~  351 (447)
                      .++.||+.||+|||+ +||+||||||+|||++.++                    .+||+|||+|+......  ......
T Consensus       198 ~i~~qi~~aL~~LH~-~~ivHrDikp~NIll~~~~--------------------~~kL~DFG~a~~~~~~~~~~~~t~~  256 (371)
T 3q60_A          198 ILTAQLIRLAANLQS-KGLVHGHFTPDNLFIMPDG--------------------RLMLGDVSALWKVGTRGPASSVPVT  256 (371)
T ss_dssp             HHHHHHHHHHHHHHH-TTEEETTCSGGGEEECTTS--------------------CEEECCGGGEEETTCEEEGGGSCGG
T ss_pred             HHHHHHHHHHHHHHH-CCCccCcCCHHHEEECCCC--------------------CEEEEecceeeecCCCccCccCCcC
Confidence            667999999999999 9999999999999999987                    79999999998765432  112255


Q ss_pred             CCCCCCCCC--CCCCchHHHHHhhccCCcccccCCCCCChhHHHH--HH-----HHHHhhccCCCCCccchHHHHHHHHH
Q 013230          352 SQDPELFSG--PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLV--YL-----VDMLLLKKTFDRSSKDERDLRSLKKR  422 (447)
Q Consensus       352 ~~~pelf~g--~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~--~~-----~~~l~~~~~~~~~~~~s~~l~dLl~~  422 (447)
                      |++||++.+  ...+.+.|||+ +|++.+++++|..|+.......  ..     .........++....+++++++||.+
T Consensus       257 y~aPE~~~~~~~~~~~~~DiwS-lG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  335 (371)
T 3q60_A          257 YAPREFLNASTATFTHALNAWQ-LGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGR  335 (371)
T ss_dssp             GCCHHHHTCSEEECCHHHHHHH-HHHHHHHHHHSSCSTTBCCTTCTTCCCBCCTTSCCCCSCCCTTSSCCCHHHHHHHHH
T ss_pred             CcChhhccCCCCCcCccccHHH-HHHHHHHHHhCCCCCCCcCcccccchhhhhhhhccccccchhhccCCCHHHHHHHHH
Confidence            899999987  56677779999 9999999999999986531100  00     00000011233345789999999999


Q ss_pred             hcccc-----CHHHHHcCCCCCCC
Q 013230          423 LDKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       423 mL~~d-----sa~elL~HPff~~~  441 (447)
                      ||.+|     |+.|+|+||||+++
T Consensus       336 ~L~~dP~~Rpt~~e~l~hp~f~~~  359 (371)
T 3q60_A          336 FLNFDRRRRLLPLEAMETPEFLQL  359 (371)
T ss_dssp             HTCSSTTTCCCHHHHTTSHHHHHH
T ss_pred             HcCCChhhCCCHHHHhcCHHHHHH
Confidence            99999     99999999999865

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=2.9e-34  Score=279.81  Aligned_cols=237  Identities=21%  Similarity=0.282  Sum_probs=188.1

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|++      +|+|++....        ....+.+.+|+.+++.++|        ||    |++
T Consensus        21 y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~--------~~~~~~~~~e~~~l~~l~h--------~~----i~~   80 (302)
T 2j7t_A           21 WEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKS--------EEELEDYIVEIEILATCDH--------PY----IVK   80 (302)
T ss_dssp             EEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC------------CCHHHHHHHHHHHHHCCC--------TT----BCC
T ss_pred             eeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCC--------HHHHHHHHHHHHHHhcCCC--------CC----Eee
Confidence            49999999999999999974      8999876432        2345678999999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++..                              ++.+|+||||+.+| +|.+++.     +++..++.++.||+.|
T Consensus        81 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~  129 (302)
T 2j7t_A           81 LLGAYYH------------------------------DGKLWIMIEFCPGG-AVDAIMLELDRGLTEPQIQVVCRQMLEA  129 (302)
T ss_dssp             EEEEEEC------------------------------C-CEEEEEECCTTE-EHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             eeeeeee------------------------------CCeEEEEEEeCCCC-cHHHHHHhhccCCCHHHHHHHHHHHHHH
Confidence            9998643                              45699999999988 9988764     8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC-----CCCEEEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT-----GEDIFFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~-----~~g~i~~~~~~~pel  357 (447)
                      |.|||+ .||+||||||+|||++.++                    .+||+|||+++...     .........|++||+
T Consensus       130 l~~lH~-~~i~H~dlkp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  188 (302)
T 2j7t_A          130 LNFLHS-KRIIHRDLKAGNVLMTLEG--------------------DIRLADFGVSAKNLKTLQKRDSFIGTPYWMAPEV  188 (302)
T ss_dssp             HHHHHH-TTCCCCCCSGGGEEECTTS--------------------CEEECCCHHHHHHHHHHHC-----CCGGGCCHHH
T ss_pred             HHHHhc-CCcccCCCCHHHEEECCCC--------------------CEEEEECCCCccccccccccccccCChhhcCCee
Confidence            999999 9999999999999999887                    79999999975421     112233455889998


Q ss_pred             C-----CCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc-cCCCCCccchHHHHHHHHHhcccc----
Q 013230          358 F-----SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK-KTFDRSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       358 f-----~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~-~~~~~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      +     .+.....+.|+|+ +|.+.++++++..|+................ .....+..++.++++||++||..|    
T Consensus       189 ~~~~~~~~~~~~~~~Di~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R  267 (302)
T 2j7t_A          189 VMCETMKDTPYDYKADIWS-LGITLIEMAQIEPPHHELNPMRVLLKIAKSDPPTLLTPSKWSVEFRDFLKIALDKNPETR  267 (302)
T ss_dssp             HHHHHTTSTTTTTHHHHHH-HHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCSCTTTS
T ss_pred             eccccCCCCCCchhhhHHH-HHHHHHHHhcCCCCCccCCHHHHHHHHhccCCcccCCccccCHHHHHHHHHHcccChhhC
Confidence            8     3555666779999 9999999999999887654433333333222 122334668899999999999999    


Q ss_pred             -CHHHHHcCCCCCCCCC
Q 013230          428 -SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       428 -sa~elL~HPff~~~~~  443 (447)
                       |++|+++||||++...
T Consensus       268 ps~~~ll~h~~~~~~~~  284 (302)
T 2j7t_A          268 PSAAQLLEHPFVSSITS  284 (302)
T ss_dssp             CCHHHHTTSTTTTTCCC
T ss_pred             CCHHHHhcChHHhhhcc
Confidence             9999999999998754

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=1.2e-34  Score=289.76  Aligned_cols=250  Identities=19%  Similarity=0.187  Sum_probs=176.1

Q ss_pred             hhhhhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCC
Q 013230          124 LLDLFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGD  197 (447)
Q Consensus       124 ~~~~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~  197 (447)
                      ....+++|   ++.+.||+|+||.||+|++      ||+|++.....         ......+|+..++.++|       
T Consensus        18 ~~~~~~~y---~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---------~~~~~~~~~~~l~~l~h-------   78 (360)
T 3e3p_A           18 SRKEMDRF---QVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPR---------FRNRELQIMQDLAVLHH-------   78 (360)
T ss_dssp             HHHHHTTE---EEC----------CEEEEETTTCCEEEEEEEECCTT---------CCCHHHHHHHHHHHHCC-------
T ss_pred             chhhccce---EEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCcc---------ccHHHHHHHHHHHhcCC-------
Confidence            33445555   9999999999999999973      99998864321         22345677788888887       


Q ss_pred             CCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhh----c----CCH
Q 013230          198 TLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFV----L----LNI  269 (447)
Q Consensus       198 ~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i----~----l~~  269 (447)
                       ||    |+++++++...+..                       ......+|+||||+.++  |...+    .    +++
T Consensus        79 -~n----iv~~~~~~~~~~~~-----------------------~~~~~~~~lv~e~~~~~--l~~~~~~~~~~~~~~~~  128 (360)
T 3e3p_A           79 -PN----IVQLQSYFYTLGER-----------------------DRRDIYLNVVMEYVPDT--LHRCCRNYYRRQVAPPP  128 (360)
T ss_dssp             -TT----BCCEEEEEEEECSS-----------------------CTTCEEEEEEEECCSCB--HHHHHHHHHTTTCCCCH
T ss_pred             -CC----cccHHHhhhccccc-----------------------cccceeEEEEeeccccc--HHHHHHHHhhcccCCCH
Confidence             88    99999997664321                       01123478999999854  33322    1    889


Q ss_pred             HHHHHHHHHHHHHHHHHH--HhCCeeeccCCCCCEEEec-CCCccccccccCcccccccCCCcEEEeeccceeecCCCCE
Q 013230          270 NEARSLLVQVTAGLAVAE--AAYEFEHRDLHWGNVLLSR-NDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI  346 (447)
Q Consensus       270 ~~~~~i~~Qil~gL~ylH--~~~~iiHrDLKpeNILl~~-~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~  346 (447)
                      ..++.++.||+.||.|||  + +||+||||||+|||++. ++                    .+||+|||+|+.......
T Consensus       129 ~~~~~~~~qi~~al~~lH~~~-~~ivH~Dlkp~NIll~~~~~--------------------~~kl~Dfg~a~~~~~~~~  187 (360)
T 3e3p_A          129 ILIKVFLFQLIRSIGCLHLPS-VNVCHRDIKPHNVLVNEADG--------------------TLKLCDFGSAKKLSPSEP  187 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHTSTT-TCCBCSCCCGGGEEEETTTT--------------------EEEECCCTTCBCCCTTSC
T ss_pred             HHHHHHHHHHHHHHHHHhCCC-CCeecCcCCHHHEEEeCCCC--------------------cEEEeeCCCceecCCCCC
Confidence            999999999999999999  8 99999999999999997 55                    799999999987654321


Q ss_pred             ----EEEecCCCCCCCCCCC-CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhcc-----------------
Q 013230          347 ----FFLDLSQDPELFSGPK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKK-----------------  404 (447)
Q Consensus       347 ----i~~~~~~~pelf~g~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~-----------------  404 (447)
                          .....|++||++.+.. ...+.|||+ +|.+.+++++|..||........+..+...-.                 
T Consensus       188 ~~~~~gt~~y~aPE~~~~~~~~~~~~Di~s-lG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (360)
T 3e3p_A          188 NVAYICSRYYRAPELIFGNQHYTTAVDIWS-VGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGCPSREVLRKLNPSHTDV  266 (360)
T ss_dssp             CCSTTSCGGGCCHHHHTTCSSCCTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTCCCG
T ss_pred             cccccCCcceeCHHHHcCCCCCCcHHHHHH-HHHHHHHHHhCCCCcCCCChHHHHHHHHHHcCCCCHHHHHhcccchhhc
Confidence                2234489999886654 566779999 99999999999999875433333322221000                 


Q ss_pred             ------------CC-CCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          405 ------------TF-DRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       405 ------------~~-~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                                  .+ ......++++++||.+||++|     |+.|+|+||||+++..+
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~  324 (360)
T 3e3p_A          267 DLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPYFDELHDP  324 (360)
T ss_dssp             GGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTSGGGGGGGCT
T ss_pred             cccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcCccccccCCc
Confidence                        00 011236789999999999999     99999999999987554

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=2.2e-34  Score=287.91  Aligned_cols=244  Identities=18%  Similarity=0.259  Sum_probs=187.6

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |.+.+.||+|+||.||+|++      ||+|++....      ........+.+|+.+++.++|        ||    |++
T Consensus        26 y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------~~----iv~   87 (353)
T 3coi_A           26 YVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPF------QSEIFAKRAYRELLLLKHMQH--------EN----VIG   87 (353)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTT------SSHHHHHHHHHHHHHHHHCCC--------TT----BCC
T ss_pred             EEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccc------cchHHHHHHHHHHHHHHhcCC--------CC----ccc
Confidence            49999999999999999963      9999987432      223345678899999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--CCHHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--LNINEARSLLVQVTAGLAV  285 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--l~~~~~~~i~~Qil~gL~y  285 (447)
                      +++++...+.                        ......+|+||||+. | +|.+++.  +++..++.++.||+.||+|
T Consensus        88 ~~~~~~~~~~------------------------~~~~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~~~i~~qi~~al~~  141 (353)
T 3coi_A           88 LLDVFTPASS------------------------LRNFYDFYLVMPFMQ-T-DLQKIMGLKFSEEKIQYLVYQMLKGLKY  141 (353)
T ss_dssp             CSEEECSCSS------------------------GGGCCCCEEEEECCS-E-EGGGTTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HhheEecccc------------------------cccceeEEEEecccc-C-CHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            9998643211                        001134699999997 5 8888876  8999999999999999999


Q ss_pred             HHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--CEEEEecCCCCCCCCC-CC
Q 013230          286 AEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--DIFFLDLSQDPELFSG-PK  362 (447)
Q Consensus       286 lH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--g~i~~~~~~~pelf~g-~~  362 (447)
                      ||+ +||+||||||+|||++.++                    .+||+|||+++.....  +......|++||++.+ ..
T Consensus       142 LH~-~~ivH~dlkp~NIl~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~  200 (353)
T 3coi_A          142 IHS-AGVVHRDLKPGNLAVNEDC--------------------ELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMH  200 (353)
T ss_dssp             HHH-TTCCCSSCCGGGEEECTTC--------------------CEEECSTTCTTC--------CCSBCCSCHHHHSCCSC
T ss_pred             HHH-CCcccCCCCHHHEeECCCC--------------------cEEEeecccccCCCCCccccccCcCcCCHHHHhCcCC
Confidence            999 9999999999999999887                    7999999999875433  2223445899998876 45


Q ss_pred             CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh----------------------------ccCCC-CCccch
Q 013230          363 GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL----------------------------KKTFD-RSSKDE  413 (447)
Q Consensus       363 ~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~----------------------------~~~~~-~~~~~s  413 (447)
                      .....|+|+ +|.+.+++++|..|+........+..+...                            ...+. .....+
T Consensus       201 ~~~~~Di~s-lG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (353)
T 3coi_A          201 YNQTVDIWS-VGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRAS  279 (353)
T ss_dssp             CCTTHHHHH-HHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTTTCTTSC
T ss_pred             CCchhhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcCCCCccHHHhcCCcC
Confidence            566679999 999999999999998754433322222110                            00111 123578


Q ss_pred             HHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          414 RDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       414 ~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                      +++++||++||..|     |++|+|+||||+....
T Consensus       280 ~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~~~  314 (353)
T 3coi_A          280 PQAADLLEKMLELDVDKRLTAAQALTHPFFEPFRD  314 (353)
T ss_dssp             HHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTTCC
T ss_pred             HHHHHHHHHHcCCCcccCCCHHHHhcCcchhhccC
Confidence            99999999999999     9999999999997654

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=3.2e-34  Score=285.07  Aligned_cols=259  Identities=18%  Similarity=0.171  Sum_probs=185.0

Q ss_pred             CcceEEeccccceEEEEec-------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          134 PENIVKVGEGTFGEAFLAG-------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      |++++.||+|+||.||+|+       .||+|++...         ....+.+.+|+.+++.++|..+     . .+..++
T Consensus        21 y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~---------~~~~~~~~~E~~~l~~l~~~~~-----~-~~~~~~   85 (355)
T 2eu9_A           21 YEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV---------GKYREAARLEINVLKKIKEKDK-----E-NKFLCV   85 (355)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC---------HHHHHHHHHHHHHHHHHHHHCT-----T-SCSCBC
T ss_pred             EEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc---------ccchhHHHHHHHHHHHHhhcCC-----C-CceeEE
Confidence            4999999999999999995       3999998632         2234678899999999988322     1 234478


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVT  280 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil  280 (447)
                      .+++++..                              .+.+|+||||+. | +|.+++.      +++..++.++.||+
T Consensus        86 ~~~~~~~~------------------------------~~~~~lv~e~~~-~-~l~~~l~~~~~~~~~~~~~~~i~~qi~  133 (355)
T 2eu9_A           86 LMSDWFNF------------------------------HGHMCIAFELLG-K-NTFEFLKENNFQPYPLPHVRHMAYQLC  133 (355)
T ss_dssp             CEEEEEEE------------------------------TTEEEEEEECCC-C-BHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred             Eeeeeeee------------------------------CCeEEEEEeccC-C-ChHHHHHhccCCCCCHHHHHHHHHHHH
Confidence            88887654                              567999999995 5 5555543      89999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC--EEEEecCCCCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED--IFFLDLSQDPELF  358 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g--~i~~~~~~~pelf  358 (447)
                      .||+|||+ .||+||||||+|||+...+.... +...............+||+|||+|+......  ......|++||++
T Consensus       134 ~~L~~lH~-~~ivH~Dlkp~NIll~~~~~~~~-~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~  211 (355)
T 2eu9_A          134 HALRFLHE-NQLTHTDLKPENILFVNSEFETL-YNEHKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVI  211 (355)
T ss_dssp             HHHHHHHT-TTEECCCCCGGGEEESCCCEEEE-ECCC-CCCEEEESCCCEEECCCTTCEETTSCCCSSCSCGGGCCHHHH
T ss_pred             HHHHHHHH-CCcccCCCCHHHEEEeccccccc-ccccccccccccCCCcEEEeecCccccccccccCCcCCCcccCCeee
Confidence            99999999 99999999999999954321000 00000000001112379999999998754432  2234558999999


Q ss_pred             CCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHH---HHHHhh---------------------------------
Q 013230          359 SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYL---VDMLLL---------------------------------  402 (447)
Q Consensus       359 ~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~---~~~l~~---------------------------------  402 (447)
                      .+...+.+.|||+ +|.+.+++++|..|+........+   ...+..                                 
T Consensus       212 ~~~~~~~~~Di~s-lG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (355)
T 2eu9_A          212 LELGWAQPCDVWS-IGCILFEYYRGFTLFQTHENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVK  290 (355)
T ss_dssp             TTCCCCTHHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHH
T ss_pred             ecCCCCCccchHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhcccc
Confidence            8888888889999 999999999999888653222211   111100                                 


Q ss_pred             ------ccCCCCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCC
Q 013230          403 ------KKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       403 ------~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~  442 (447)
                            ..........+.++++||++||..|     |++|+|+||||+++.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~  341 (355)
T 2eu9_A          291 ENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFFAGLT  341 (355)
T ss_dssp             HHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTSGGGGGCC
T ss_pred             ccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHHHHhcChhhcCCC
Confidence                  0001112234678999999999999     999999999999874

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=1.3e-34  Score=280.32  Aligned_cols=235  Identities=17%  Similarity=0.154  Sum_probs=170.5

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|++      ||+|++.....      .....+...++..+++.++|        ||    |++
T Consensus         9 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~------~~~~~~~~~~~~~~~~~~~h--------~~----iv~   70 (290)
T 3fme_A            9 LEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVN------SQEQKRLLMDLDISMRTVDC--------PF----TVT   70 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---C------HHHHHHHHHHHHHHHTTCCC--------TT----BCC
T ss_pred             hhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccC------cHHHHHHHHHHHHHHHhCCC--------Ce----EEE
Confidence            49999999999999999984      99999864421      11222334445555667776        77    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQV  279 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Qi  279 (447)
                      +++++..                              ++..|+||||+. | +|.+++.        +++..++.++.||
T Consensus        71 ~~~~~~~------------------------------~~~~~lv~e~~~-~-~l~~~l~~~~~~~~~~~~~~~~~i~~qi  118 (290)
T 3fme_A           71 FYGALFR------------------------------EGDVWICMELMD-T-SLDKFYKQVIDKGQTIPEDILGKIAVSI  118 (290)
T ss_dssp             EEEEEEC------------------------------SSSEEEEEECCS-E-EHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             Eeeeeec------------------------------cCCEEEEEehhc-c-chHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            9999643                              566999999997 5 7766643        8999999999999


Q ss_pred             HHHHHHHHHhC-CeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE----EEEecCCC
Q 013230          280 TAGLAVAEAAY-EFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI----FFLDLSQD  354 (447)
Q Consensus       280 l~gL~ylH~~~-~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~----i~~~~~~~  354 (447)
                      +.||+|||+ . ||+||||||+|||++.++                    .+||+|||+|+.......    .....|++
T Consensus       119 ~~~l~~lH~-~~~i~H~dlkp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~a  177 (290)
T 3fme_A          119 VKALEHLHS-KLSVIHRDVKPSNVLINALG--------------------QVKMCDFGISGYLVDDVAKDIDAGCKPYMA  177 (290)
T ss_dssp             HHHHHHHHH-HSCCCCCCCSGGGCEECTTC--------------------CEEBCCC---------------CCCCCCSC
T ss_pred             HHHHHHHhh-cCCeecCCCCHHHEEECCCC--------------------CEEEeecCCcccccccccccccCCCccccC
Confidence            999999999 6 999999999999999887                    799999999987544321    22344889


Q ss_pred             CCCC----CCCCCCchHHHHHhhccCCcccccCCCCCChh-HHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc--
Q 013230          355 PELF----SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV-LWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       355 pelf----~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~-~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d--  427 (447)
                      ||.+    .+.....+.|+|+ +|.+.++++++..|+... .....+...............+++++++||.+||..|  
T Consensus       178 PE~~~~~~~~~~~~~~~Di~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  256 (290)
T 3fme_A          178 PERINPELNQKGYSVKSDIWS-LGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQLPADKFSAEFVDFTSQCLKKNSK  256 (290)
T ss_dssp             HHHHSCCTTC--CCHHHHHHH-HHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHTCSSGG
T ss_pred             hhhcChhhcCcCCCcHHHHHH-HHHHHHHHHHCCCCccccCchHHHHHHHhccCCCCcccccCCHHHHHHHHHHhhcChh
Confidence            9986    4444556679999 999999999999998642 1222222333222222223468999999999999999  


Q ss_pred             ---CHHHHHcCCCCCC
Q 013230          428 ---SAKEAIFDPFFSD  440 (447)
Q Consensus       428 ---sa~elL~HPff~~  440 (447)
                         |++|+++||||+.
T Consensus       257 ~Rpt~~e~l~hp~f~~  272 (290)
T 3fme_A          257 ERPTYPELMQHPFFTL  272 (290)
T ss_dssp             GSCCHHHHTTSHHHHH
T ss_pred             hCcCHHHHHhCccccc
Confidence               9999999999974

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.4e-34  Score=282.20  Aligned_cols=234  Identities=18%  Similarity=0.249  Sum_probs=188.1

Q ss_pred             CcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|+      .||+|++....          ..+.+.+|+.+++.++|        ||    |++
T Consensus        31 y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~----------~~~~~~~e~~~l~~l~h--------~~----i~~   88 (314)
T 3com_A           31 FDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES----------DLQEIIKEISIMQQCDS--------PH----VVK   88 (314)
T ss_dssp             EEEEEECC----CEEEEEEETTTCCEEEEEEEETTS----------CCHHHHHHHHHHHTCCC--------TT----BCC
T ss_pred             hhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH----------HHHHHHHHHHHHHhCCC--------CC----Ccc
Confidence            4999999999999999996      39999987432          23568999999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++..                              .+.+|+||||+.+| +|.+++.     +++..++.++.||+.|
T Consensus        89 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~i~~~i~~~  137 (314)
T 3com_A           89 YYGSYFK------------------------------NTDLWIVMEYCGAG-SVSDIIRLRNKTLTEDEIATILQSTLKG  137 (314)
T ss_dssp             EEEEEEE------------------------------TTEEEEEEECCTTE-EHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred             EEEEEEe------------------------------CCEEEEEeecCCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            9998654                              56699999999987 9999875     8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pel  357 (447)
                      |.|||+ .||+||||||+|||++.++                    .+||+|||+++.....     .......|++||+
T Consensus       138 l~~lH~-~~i~H~dl~p~Nil~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  196 (314)
T 3com_A          138 LEYLHF-MRKIHRDIKAGNILLNTEG--------------------HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEV  196 (314)
T ss_dssp             HHHHHH-TTEECCCCSGGGEEECTTC--------------------CEEECCCTTCEECBTTBSCBCCCCSCGGGCCHHH
T ss_pred             HHHHHh-CCCcCCCcCHHHEEECCCC--------------------CEEEeecccchhhhhhccccCccCCCCCccChhh
Confidence            999999 9999999999999999887                    7999999999775443     1122345889999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh-ccCCCCCccchHHHHHHHHHhcccc-----CHHH
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL-KKTFDRSSKDERDLRSLKKRLDKYN-----SAKE  431 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~-~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~e  431 (447)
                      +.+.......|+|+ +|.+.++++.+..|+............... ...+..+..++.++.+||.+||..|     |+.+
T Consensus       197 ~~~~~~~~~~Di~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~  275 (314)
T 3com_A          197 IQEIGYNCVADIWS-LGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDNFTDFVKQCLVKSPEQRATATQ  275 (314)
T ss_dssp             HSSSCBCTTHHHHH-HHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHTCSCTTTSCCHHH
T ss_pred             cCCCCCCccccHHH-HHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCcccCCcccCCHHHHHHHHHHccCChhhCcCHHH
Confidence            98877777789999 999999999999998764333322222211 1233345567899999999999999     9999


Q ss_pred             HHcCCCCCCCC
Q 013230          432 AIFDPFFSDLI  442 (447)
Q Consensus       432 lL~HPff~~~~  442 (447)
                      +++||||++..
T Consensus       276 ll~~~~~~~~~  286 (314)
T 3com_A          276 LLQHPFVRSAK  286 (314)
T ss_dssp             HTTSHHHHTCC
T ss_pred             HHhCHHHhcCC
Confidence            99999998764

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=4.8e-34  Score=284.61  Aligned_cols=244  Identities=19%  Similarity=0.203  Sum_probs=187.1

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||+|+||.||+|++      ||+|++...       ........+.+|+.+++.++|        ||    |+
T Consensus        12 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-------~~~~~~~~~~~E~~~l~~l~h--------~~----iv   72 (353)
T 2b9h_A           12 DFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPF-------DKPLFALRTLREIKILKHFKH--------EN----II   72 (353)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-------SSHHHHHHHHHHHHHHHHCCC--------TT----BC
T ss_pred             ceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeeccc-------ccchHHHHHHHHHHHHHhCcC--------CC----cC
Confidence            459999999999999999973      999988632       122344667899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGL  283 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL  283 (447)
                      ++++++....                         +......|+||||+. | +|.+++.   +++..++.++.||+.||
T Consensus        73 ~~~~~~~~~~-------------------------~~~~~~~~lv~e~~~-~-~L~~~~~~~~~~~~~~~~~~~qi~~~L  125 (353)
T 2b9h_A           73 TIFNIQRPDS-------------------------FENFNEVYIIQELMQ-T-DLHRVISTQMLSDDHIQYFIYQTLRAV  125 (353)
T ss_dssp             CEEEECCCSC-------------------------STTCCCEEEEECCCS-E-EHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             Ceeeeecccc-------------------------cCccceEEEEEeccC-c-cHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence            9998843211                         222467999999997 5 8988876   99999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE---------------EE
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI---------------FF  348 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~---------------i~  348 (447)
                      +|||+ .||+||||||+|||++.++                    .+||+|||+|+.......               ..
T Consensus       126 ~~LH~-~~ivH~Dlkp~Nil~~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~g  184 (353)
T 2b9h_A          126 KVLHG-SNVIHRDLKPSNLLINSNC--------------------DLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVA  184 (353)
T ss_dssp             HHHHH-TTEECSCCCGGGEEECTTC--------------------CEEECCCTTCEECC----------------CCCCC
T ss_pred             HHHHH-CCeecCCCCHHHeEEcCCC--------------------cEEEEecccccccccccccccCccccccchhhccc
Confidence            99999 9999999999999999887                    799999999987643211               12


Q ss_pred             EecCCCCCCCCC-CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh--hc----------------------
Q 013230          349 LDLSQDPELFSG-PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL--LK----------------------  403 (447)
Q Consensus       349 ~~~~~~pelf~g-~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~--~~----------------------  403 (447)
                      ...|++||++.+ .....+.|+|+ +|.+.++++.+..|+........+..+..  +.                      
T Consensus       185 t~~y~aPE~~~~~~~~~~~~Di~s-lG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (353)
T 2b9h_A          185 TRWYRAPEVMLTSAKYSRAMDVWS-CGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSL  263 (353)
T ss_dssp             CGGGCCHHHHHSCCCCCHHHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCSTTTTTTCCCHHHHHHHHTS
T ss_pred             cccccCCeeeccCCCccchhhHHH-HHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCchhccccccccchhhHHhhcc
Confidence            334889997754 45566679999 99999999999988865433222221110  00                      


Q ss_pred             cCCCC------CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          404 KTFDR------SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       404 ~~~~~------~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                      ...+.      ...+++++++||++||..|     |++|+|+||||+....+
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~~  315 (353)
T 2b9h_A          264 PMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEHPYLQTYHDP  315 (353)
T ss_dssp             CCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCCT
T ss_pred             cCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcCccccccCCc
Confidence            00110      1357899999999999999     99999999999977543

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=5.2e-34  Score=278.62  Aligned_cols=234  Identities=18%  Similarity=0.255  Sum_probs=192.0

Q ss_pred             CcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|+      .||+|++....       .....+.+.+|+.+++.++|        ||    |++
T Consensus        24 y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-------~~~~~~~~~~e~~~l~~l~h--------~~----i~~   84 (303)
T 3a7i_A           24 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEE-------AEDEIEDIQQEITVLSQCDS--------PY----VTK   84 (303)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTT-------CSTTHHHHHHHHHHHHHCCC--------TT----BCC
T ss_pred             HHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccc-------cHHHHHHHHHHHHHHHhCCC--------CC----EeE
Confidence            4899999999999999996      39999987542       22345778999999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~  284 (447)
                      +++++..                              +..+|+||||+.+| +|.+++.   +++..++.++.||+.||.
T Consensus        85 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~qi~~~l~  133 (303)
T 3a7i_A           85 YYGSYLK------------------------------DTKLWIIMEYLGGG-SALDLLEPGPLDETQIATILREILKGLD  133 (303)
T ss_dssp             EEEEEEE------------------------------TTEEEEEEECCTTE-EHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEec------------------------------CCeEEEEEEeCCCC-cHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            9998654                              46699999999987 9999887   899999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPELFS  359 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pelf~  359 (447)
                      |||+ .||+||||||+|||++.++                    .+||+|||+++......     ......|++||.+.
T Consensus       134 ~lH~-~~i~H~dl~p~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~  192 (303)
T 3a7i_A          134 YLHS-EKKIHRDIKAANVLLSEHG--------------------EVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIK  192 (303)
T ss_dssp             HHHH-TTEECCCCSGGGEEECTTS--------------------CEEECCCTTCEECBTTBCCBCCCCSCGGGCCHHHHT
T ss_pred             HHHH-CCCccCCCChheEEECCCC--------------------CEEEeecccceecCccccccCccCCCcCccCHHHHh
Confidence            9999 9999999999999999887                    79999999998765432     12234488999998


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      +.......|+|+ +|.+.++++.+..|+............. .......+..++.++++||.+||..|     |+.|+++
T Consensus       193 ~~~~~~~~Di~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  270 (303)
T 3a7i_A          193 QSAYDSKADIWS-LGITAIELARGEPPHSELHPMKVLFLIP-KNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLK  270 (303)
T ss_dssp             TCCBCTHHHHHH-HHHHHHHHHHSSCTTTTSCHHHHHHHHH-HSCCCCCCSSCCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             cCCCCchhhhHH-HHHHHHHHccCCCCCCCcCHHHHHHHhh-cCCCCCCccccCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence            877777889999 9999999999999986543333222222 11222234568899999999999999     9999999


Q ss_pred             CCCCCC
Q 013230          435 DPFFSD  440 (447)
Q Consensus       435 HPff~~  440 (447)
                      ||||..
T Consensus       271 ~~~~~~  276 (303)
T 3a7i_A          271 HKFILR  276 (303)
T ss_dssp             CHHHHH
T ss_pred             Chhhhc
Confidence            999964

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=281.85  Aligned_cols=241  Identities=16%  Similarity=0.196  Sum_probs=188.7

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||+|+||.||+|++      +|+|++.....    .........+.+|+.+++.++|        ||    |+
T Consensus         6 ~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~~~~~~~~~E~~~l~~l~h--------~~----i~   69 (305)
T 2wtk_C            6 KYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKL----RRIPNGEANVKKEIQLLRRLRH--------KN----VI   69 (305)
T ss_dssp             CBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHH----HHSTTHHHHHHHHHHHHTTCCC--------TT----BC
T ss_pred             ceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccc----cccchhHHHHHHHHHHHHhcCC--------CC----ee
Confidence            349999999999999999974      89999874321    0112234678999999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVT  280 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil  280 (447)
                      ++++++...                            ..+.+|+||||+.+|  |.+++.      +++..++.++.||+
T Consensus        70 ~~~~~~~~~----------------------------~~~~~~lv~e~~~~~--l~~~~~~~~~~~~~~~~~~~~~~qi~  119 (305)
T 2wtk_C           70 QLVDVLYNE----------------------------EKQKMYMVMEYCVCG--MQEMLDSVPEKRFPVCQAHGYFCQLI  119 (305)
T ss_dssp             CEEEEEECC-------------------------------CEEEEEECCSEE--HHHHHHHSTTCSCCHHHHHHHHHHHH
T ss_pred             EEEEEEEcC----------------------------CCCeEEEEehhccCC--HHHHHHhCcccccCHHHHHHHHHHHH
Confidence            999986431                            145699999999855  555443      89999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---C----EEEEecCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---D----IFFLDLSQ  353 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---g----~i~~~~~~  353 (447)
                      .||+|||+ .||+||||||+|||++.++                    .+||+|||+++.....   .    ......|+
T Consensus       120 ~al~~LH~-~~i~H~dlkp~NIl~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~  178 (305)
T 2wtk_C          120 DGLEYLHS-QGIVHKDIKPGNLLLTTGG--------------------TLKISALGVAEALHPFAADDTCRTSQGSPAFQ  178 (305)
T ss_dssp             HHHHHHHH-TTEECSCCSGGGEEECTTC--------------------CEEECCCTTCEECCTTCSSCEECCCCSCGGGC
T ss_pred             HHHHHHHH-CCeeecCCCcccEEEcCCC--------------------cEEeeccccccccCccccccccccCCCCCCCc
Confidence            99999999 9999999999999999887                    7999999999875422   1    11234488


Q ss_pred             CCCCCCCCCC--CchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----
Q 013230          354 DPELFSGPKG--DKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       354 ~pelf~g~~~--~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      +||++.+...  ..+.|||+ +|.+.++++.+..|+.............  ...++.+...++++.+||++||..|    
T Consensus       179 aPE~~~~~~~~~~~~~Di~s-lG~il~~l~~g~~p~~~~~~~~~~~~i~--~~~~~~~~~~~~~l~~li~~~l~~dp~~R  255 (305)
T 2wtk_C          179 PPEIANGLDTFSGFKVDIWS-AGVTLYNITTGLYPFEGDNIYKLFENIG--KGSYAIPGDCGPPLSDLLKGMLEYEPAKR  255 (305)
T ss_dssp             CHHHHTCCSCEESHHHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHH--HCCCCCCSSSCHHHHHHHHHHTCSSTTTS
T ss_pred             ChhhccCcccCCcchhhHHH-HHHHHHHHHhCCCCCCCchHHHHHHHHh--cCCCCCCCccCHHHHHHHHHHccCChhhC
Confidence            9999877443  44669999 9999999999999987654444333333  2344455678999999999999999    


Q ss_pred             -CHHHHHcCCCCCCCCC
Q 013230          428 -SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       428 -sa~elL~HPff~~~~~  443 (447)
                       |++|+++||||++...
T Consensus       256 ps~~~ll~~~~~~~~~~  272 (305)
T 2wtk_C          256 FSIRQIRQHSWFRKKHP  272 (305)
T ss_dssp             CCHHHHHHSHHHHSCCC
T ss_pred             CCHHHHhcCcccccCCC
Confidence             9999999999986543

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=2.1e-34  Score=279.45  Aligned_cols=245  Identities=24%  Similarity=0.324  Sum_probs=194.3

Q ss_pred             hhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCC
Q 013230          127 LFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLN  200 (447)
Q Consensus       127 ~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n  200 (447)
                      ..++|   ++++.||+|+||.||+|++      ||+|++.....      .....+.+.+|+.++++++|        ||
T Consensus        20 ~~~~y---~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~------~~~~~~~~~~e~~~l~~l~h--------~~   82 (287)
T 2wei_A           20 FAERY---NIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASA------KNKDTSTILREVELLKKLDH--------PN   82 (287)
T ss_dssp             HHHHE---EEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGB------SSSCHHHHHHHHHHHHTCCC--------TT
T ss_pred             Hhhcc---eeeEEEcCCCCEEEEEEEEcCCCcEEEEEEeccccc------chHHHHHHHHHHHHHHhccC--------CC
Confidence            34556   9999999999999999973      99999875421      23345678999999999988        88


Q ss_pred             cccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHH
Q 013230          201 ACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLL  276 (447)
Q Consensus       201 ~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~  276 (447)
                          |+++++++..                              .+.+|+||||+.+| +|.+++.    +++..++.++
T Consensus        83 ----i~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~i~  127 (287)
T 2wei_A           83 ----IMKLFEILED------------------------------SSSFYIVGELYTGG-ELFDEIIKRKRFSEHDAARII  127 (287)
T ss_dssp             ----BCCEEEEEEC------------------------------SSEEEEEECCCCSC-BHHHHHHHHSSCCHHHHHHHH
T ss_pred             ----ccEEEEEEeC------------------------------CCeEEEEEEccCCC-CHHHHHHhcCCCCHHHHHHHH
Confidence                9999998543                              56799999999987 8887764    8999999999


Q ss_pred             HHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE----EEEecC
Q 013230          277 VQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI----FFLDLS  352 (447)
Q Consensus       277 ~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~----i~~~~~  352 (447)
                      .||+.||.|||+ .||+||||||+|||++.++.                 ...+||+|||+++.......    .....|
T Consensus       128 ~qi~~~l~~LH~-~~i~H~dl~p~NIlv~~~~~-----------------~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y  189 (287)
T 2wei_A          128 KQVFSGITYMHK-HNIVHRDLKPENILLESKEK-----------------DCDIKIIDFGLSTCFQQNTKMKDRIGTAYY  189 (287)
T ss_dssp             HHHHHHHHHHHH-TTCCCSCCCGGGEEESCSST-----------------TCCEEECSTTGGGTBCCCSSCSCHHHHHTT
T ss_pred             HHHHHHHHHHHH-CCeeccCCChhhEEEecCCC-----------------cccEEEeccCcceeecCCCccccccCcccc
Confidence            999999999999 99999999999999987541                 12699999999986544321    223448


Q ss_pred             CCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc---
Q 013230          353 QDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN---  427 (447)
Q Consensus       353 ~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d---  427 (447)
                      ++||.+.+. ...+.|+|+ +|.+.++++.+..|+..................++.  ...+++++++||++||..|   
T Consensus       190 ~aPE~~~~~-~~~~~Di~s-lG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~  267 (287)
T 2wei_A          190 IAPEVLRGT-YDEKCDVWS-AGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSL  267 (287)
T ss_dssp             CCHHHHTTC-CCTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGTTSCHHHHHHHHHHTCSSGGG
T ss_pred             cChHHhcCC-CCCchhhHh-HHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCchhhhhcCHHHHHHHHHHcccChhh
Confidence            899999874 667779999 999999999999998765443333333322222222  2457899999999999999   


Q ss_pred             --CHHHHHcCCCCCCCCC
Q 013230          428 --SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       428 --sa~elL~HPff~~~~~  443 (447)
                        |+.|+|+||||++...
T Consensus       268 Rps~~ell~hp~~~~~~~  285 (287)
T 2wei_A          268 RITATQCLEHPWIQKYSS  285 (287)
T ss_dssp             SCCHHHHHHSHHHHHHCC
T ss_pred             CcCHHHHhcCHHHhcccc
Confidence              9999999999987644

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=1.8e-34  Score=287.12  Aligned_cols=246  Identities=14%  Similarity=0.143  Sum_probs=190.1

Q ss_pred             CCcceEEeccccceEEEEec----eeEEEEEecCCCccccc---------ccccchHHHHHHHHHHHhccccccCCCCCC
Q 013230          133 DPENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNG---------EAQKKSEELLEEVVLSWTLNHLRRNEGDTL  199 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~---------~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~  199 (447)
                      +|++++.||+|+||.||+|+    .||+|++..........         ......+.+.+|+.+++.++|        |
T Consensus        32 ~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h--------~  103 (348)
T 2pml_X           32 DYRIIRTLNQGKFNKIILCEKDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKN--------E  103 (348)
T ss_dssp             TEEEEEEEECCSSCCEEEEEETTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCC--------T
T ss_pred             ceEEEEEEcCCCCeEEEEEEcCCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCC--------C
Confidence            45999999999999999997    49999987542100000         000112788999999999988        8


Q ss_pred             CcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhh------hc------C
Q 013230          200 NACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESF------VL------L  267 (447)
Q Consensus       200 n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~------i~------l  267 (447)
                      |    |+++++++..                              .+.+|+||||+.+| +|.++      +.      +
T Consensus       104 ~----i~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~l~~~~~~~~  148 (348)
T 2pml_X          104 Y----CLTCEGIITN------------------------------YDEVYIIYEYMEND-SILKFDEYFFVLDKNYTCFI  148 (348)
T ss_dssp             T----BCCCSEEEES------------------------------SSEEEEEEECCTTC-BSSEESSSEESSCSSSCCCC
T ss_pred             C----cceEEEEEee------------------------------CCeEEEEEeccCCC-cHHHHHHHhhhhhhccccCC
Confidence            8    9999999643                              46799999999988 99887      43      8


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---
Q 013230          268 NINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---  344 (447)
Q Consensus       268 ~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---  344 (447)
                      ++..++.++.||+.||+|||+..||+||||||+|||++.++                    .+||+|||+++.....   
T Consensus       149 ~~~~~~~i~~qi~~~l~~lH~~~~i~H~dl~p~Nil~~~~~--------------------~~kl~dfg~~~~~~~~~~~  208 (348)
T 2pml_X          149 PIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKNG--------------------RVKLSDFGESEYMVDKKIK  208 (348)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTSCEECCCCCGGGEEECTTS--------------------CEEECCCTTCEECBTTEEC
T ss_pred             CHHHHHHHHHHHHHHHHHHhccCCEeecCCChHhEEEcCCC--------------------cEEEecccccccccccccc
Confidence            99999999999999999999658999999999999999887                    7999999999875443   


Q ss_pred             CEEEEecCCCCCCCCCC-CCCc-hHHHHHhhccCCcccccCCCCCChhHH-HHHHHHHHhhccCCCCC------------
Q 013230          345 DIFFLDLSQDPELFSGP-KGDK-QFDTYRKMKKVTEDQWEGSFPKTNVLW-LVYLVDMLLLKKTFDRS------------  409 (447)
Q Consensus       345 g~i~~~~~~~pelf~g~-~~~~-~~di~s~lg~~~~~~~~~~~p~~~~~~-~~~~~~~l~~~~~~~~~------------  409 (447)
                      .......|++||.+.+. .... +.|+|+ +|.+.++++.+..|+..... .............++..            
T Consensus       209 ~~~~~~~y~aPE~~~~~~~~~~~~~Di~s-lG~il~~l~~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  287 (348)
T 2pml_X          209 GSRGTYEFMPPEFFSNESSYNGAKVDIWS-LGICLYVMFYNVVPFSLKISLVELFNNIRTKNIEYPLDRNHFLYPLTNKK  287 (348)
T ss_dssp             SSCSCGGGCCGGGGSSCCCEEHHHHHHHH-HHHHHHHHHHSSCSSCCSSCSHHHHHHHTSCCCCCCCSSSSSTTTTCC--
T ss_pred             CCCCCcCccCchhhcCCCCCCcchhhHHH-HHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCcCCccchhhhhccccccc
Confidence            11223448999999886 3334 569999 99999999999988865322 22222222222222211            


Q ss_pred             -----ccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCC
Q 013230          410 -----SKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       410 -----~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~  442 (447)
                           ..+++++++||++||..|     |++|+++||||++..
T Consensus       288 ~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~hp~f~~~~  330 (348)
T 2pml_X          288 STCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKHEWLADTN  330 (348)
T ss_dssp             ------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGTTCC
T ss_pred             cccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcCccccCCC
Confidence                 568899999999999999     999999999999864

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=8.8e-34  Score=275.40  Aligned_cols=245  Identities=18%  Similarity=0.214  Sum_probs=182.9

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|++      ||+|++...         ....+.+.+|+.+++.++|        ||    |++
T Consensus         8 y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~---------~~~~~~~~~E~~~l~~l~h--------~~----i~~   66 (303)
T 1zy4_A            8 FEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT---------EEKLSTILSEVMLLASLNH--------QY----VVR   66 (303)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE---------HHHHHHHHHHHHHHTTCCC--------TT----BCC
T ss_pred             chhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc---------HHHHHHHHHHHHHHHhcCc--------hH----HHH
Confidence            39999999999999999973      999988632         2344678999999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++........                 ........+.+|+||||+.+| +|.+++.     +++..++.++.||+.|
T Consensus        67 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~i~~qi~~~  128 (303)
T 1zy4_A           67 YYAAWLERRNFVK-----------------PMTAVKKKSTLFIQMEYCENG-TLYDLIHSENLNQQRDEYWRLFRQILEA  128 (303)
T ss_dssp             EEEEEEECCCCCC-----------------------CEEEEEEEEECCCSC-BHHHHHHHSCGGGCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcchhh-----------------hhcccccCCceEEEEecCCCC-CHHHhhhccccccchHHHHHHHHHHHHH
Confidence            9998754211000                 000012246689999999988 9999885     7889999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------------------
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------------------  344 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------------------  344 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+++.....                  
T Consensus       129 l~~LH~-~~i~H~dlkp~Nil~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (303)
T 1zy4_A          129 LSYIHS-QGIIHRDLKPMNIFIDESR--------------------NVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNL  187 (303)
T ss_dssp             HHHHHH-TTCCCSCCCGGGEEECTTS--------------------CEEECCCCCCSCTTC-------------------
T ss_pred             HHHHHh-CCeecccCCHHhEEEcCCC--------------------CEEEeeCcchhhcccccchhcccccccccccccc
Confidence            999999 9999999999999999887                    7999999999865421                  


Q ss_pred             -CEEEEecCCCCCCCCCC-CCCchHHHHHhhccCCcccccCCCCCChhHH-HHHHHHHHhhccCCCC--CccchHHHHHH
Q 013230          345 -DIFFLDLSQDPELFSGP-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLW-LVYLVDMLLLKKTFDR--SSKDERDLRSL  419 (447)
Q Consensus       345 -g~i~~~~~~~pelf~g~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~-~~~~~~~l~~~~~~~~--~~~~s~~l~dL  419 (447)
                       .......|++||.+.+. ....+.|+|+ +|.+.++++.   |+..... .............++.  +...++.+++|
T Consensus       188 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~s-lG~il~~l~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  263 (303)
T 1zy4_A          188 TSAIGTAMYVATEVLDGTGHYNEKIDMYS-LGIIFFEMIY---PFSTGMERVNILKKLRSVSIEFPPDFDDNKMKVEKKI  263 (303)
T ss_dssp             ------CTTSCHHHHTSCSCCCTHHHHHH-HHHHHHHHHS---CCSSHHHHHHHHHHHHSTTCCCCTTCCTTTSHHHHHH
T ss_pred             ccCCCcccccCcccccCCCCCcchhhHHH-HHHHHHHHHh---ccCCchhHHHHHHhccccccccCccccccchHHHHHH
Confidence             12334558999998765 4566779999 9999999987   4432211 1222222211122222  34567889999


Q ss_pred             HHHhcccc-----CHHHHHcCCCCCCCC
Q 013230          420 KKRLDKYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       420 l~~mL~~d-----sa~elL~HPff~~~~  442 (447)
                      |++||..|     |++|+++||||+...
T Consensus       264 i~~~l~~dp~~Rps~~~ll~h~~~~~~~  291 (303)
T 1zy4_A          264 IRLLIDHDPNKRPGARTLLNSGWLPVKH  291 (303)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHSSCSCCCC
T ss_pred             HHHHHhcCcccCcCHHHHhCCCCcCCCC
Confidence            99999999     999999999998653

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=3.7e-34  Score=282.17  Aligned_cols=237  Identities=15%  Similarity=0.140  Sum_probs=182.5

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||.||+|++      ||+|++....       .....+.+.+|+.+++.++|        ||    |++
T Consensus        11 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------~~----iv~   71 (319)
T 4euu_A           11 WLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNIS-------FLRPVDVQMREFEVLKKLNH--------KN----IVK   71 (319)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGG-------GGSCHHHHHHHHHHHHHCCC--------TT----BCC
T ss_pred             EEEEEEecCCCCeEEEEEEECCCCcEEEEEEecccc-------ccchHHHHHHHHHHHHhcCC--------CC----cce
Confidence            49999999999999999973      9999987432       22335677899999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------CCHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------LNINEARSLLVQVT  280 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------l~~~~~~~i~~Qil  280 (447)
                      +++++...+                            ...+|+||||+.+| +|.+++.       +++..++.++.||+
T Consensus        72 ~~~~~~~~~----------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~i~~qi~  122 (319)
T 4euu_A           72 LFAIEEETT----------------------------TRHKVLIMEFCPCG-SLYTVLEEPSNAYGLPESEFLIVLRDVV  122 (319)
T ss_dssp             EEEEEECTT----------------------------TCCEEEEEECCTTC-BHHHHHHSGGGTTCCCHHHHHHHHHHHH
T ss_pred             EEEEeecCC----------------------------CceEEEEEeCCCCC-CHHHHHHHhccccCCCHHHHHHHHHHHH
Confidence            999865311                            34689999999988 9999876       89999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPE  356 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pe  356 (447)
                      .||+|||+ .||+||||||+|||+.....                ....+||+|||+|+......    ......|++||
T Consensus       123 ~~L~~LH~-~~ivH~Dlkp~NIll~~~~~----------------~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE  185 (319)
T 4euu_A          123 GGMNHLRE-NGIVHRNIKPGNIMRVIGED----------------GQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPD  185 (319)
T ss_dssp             HHHHHHHH-TTEECSCCSGGGEEEEECTT----------------SCEEEEECCCTTCEECCTTCCBCCCCSCGGGCCHH
T ss_pred             HHHHHHHH-CCEecCCCCHHHEEEeccCC----------------CCceEEEccCCCceecCCCCceeecccCCCccCHH
Confidence            99999999 99999999999999832210                00169999999998765442    12334588999


Q ss_pred             CCC--------CCCCCchHHHHHhhccCCcccccCCCCCCh----hHHHHHHHHHHhhcc-------------------C
Q 013230          357 LFS--------GPKGDKQFDTYRKMKKVTEDQWEGSFPKTN----VLWLVYLVDMLLLKK-------------------T  405 (447)
Q Consensus       357 lf~--------g~~~~~~~di~s~lg~~~~~~~~~~~p~~~----~~~~~~~~~~l~~~~-------------------~  405 (447)
                      ++.        +...+.+.|||+ +|.+.+++++|..||..    ......+...+....                   .
T Consensus       186 ~~~~~~~~~~~~~~~~~~~Diws-lG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  264 (319)
T 4euu_A          186 MYERAVLRKDHQKKYGATVDLWS-IGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGD  264 (319)
T ss_dssp             HHHHHTSCCCCCCCBCTTHHHHH-HHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESS
T ss_pred             HhhhccccccccCCCCcHHHHHH-HHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCCcccchhhhcccCCccccCcc
Confidence            875        445666779999 99999999999988852    112223333332221                   1


Q ss_pred             CC----CCccchHHHHHHHHHhcccc-----CHHHHHcCC
Q 013230          406 FD----RSSKDERDLRSLKKRLDKYN-----SAKEAIFDP  436 (447)
Q Consensus       406 ~~----~~~~~s~~l~dLl~~mL~~d-----sa~elL~HP  436 (447)
                      ++    .....+..+.+||++||++|     |++|+|+||
T Consensus       265 ~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~  304 (319)
T 4euu_A          265 MPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAET  304 (319)
T ss_dssp             CCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHH
T ss_pred             CCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhcc
Confidence            11    12456889999999999999     999999997

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=3.5e-34  Score=286.26  Aligned_cols=231  Identities=19%  Similarity=0.198  Sum_probs=186.3

Q ss_pred             CcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCc
Q 013230          134 PENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNA  201 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~  201 (447)
                      |++.+.||+|+||.||+|+           .||+|++....       .....+.+.+|+.+++.+ +|        || 
T Consensus        24 y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~~~E~~~l~~l~~h--------pn-   87 (359)
T 3vhe_A           24 LKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA-------THSEHRALMSELKILIHIGHH--------LN-   87 (359)
T ss_dssp             EEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC-------CHHHHHHHHHHHHHHHHHCCC--------TT-
T ss_pred             eeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcC-------CHHHHHHHHHHHHHHHhhcCC--------cc-
Confidence            4999999999999999995           49999986432       222346789999999999 45        66 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------------
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------------  266 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------------  266 (447)
                         |+++++++..                             ....+|+|||||.+| +|.+++.               
T Consensus        88 ---iv~~~~~~~~-----------------------------~~~~~~iv~e~~~~g-~L~~~l~~~~~~~~~~~~~~~~  134 (359)
T 3vhe_A           88 ---VVNLLGACTK-----------------------------PGGPLMVIVEFCKFG-NLSTYLRSKRNEFVPYKTKGAR  134 (359)
T ss_dssp             ---BCCEEEEECS-----------------------------TTSCCEEEEECCTTE-EHHHHHHTTTTSBCSCC-----
T ss_pred             ---eeeeeeeeec-----------------------------CCCceEEEEEecCCC-cHHHHHHhccccccccccccch
Confidence               9999998532                             234589999999988 9988863               


Q ss_pred             -------------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHhCC
Q 013230          267 -------------------------------------------------------LNINEARSLLVQVTAGLAVAEAAYE  291 (447)
Q Consensus       267 -------------------------------------------------------l~~~~~~~i~~Qil~gL~ylH~~~~  291 (447)
                                                                             +++..++.++.||+.||+|||+ .|
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~-~~  213 (359)
T 3vhe_A          135 FRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS-RK  213 (359)
T ss_dssp             -------------------------------------------------CTTTTCBCHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred             hhcccccccccchhhhccccccCccccccccccccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHH-CC
Confidence                                                                   6788999999999999999999 99


Q ss_pred             eeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-------CEEEEecCCCCCCCCCCCCC
Q 013230          292 FEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-------DIFFLDLSQDPELFSGPKGD  364 (447)
Q Consensus       292 iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-------g~i~~~~~~~pelf~g~~~~  364 (447)
                      |+||||||+|||++.++                    .+||+|||+|+.....       .......|++||++.+...+
T Consensus       214 ivH~Dikp~NIll~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~  273 (359)
T 3vhe_A          214 CIHRDLAARNILLSEKN--------------------VVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYT  273 (359)
T ss_dssp             CCCSCCSGGGEEECGGG--------------------CEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHHHCCCC
T ss_pred             cccCCCChhhEEEcCCC--------------------cEEEEeccceeeecccccchhccccCCCceeEChhhhcCCCCC
Confidence            99999999999999887                    7999999999865332       12233348999999887777


Q ss_pred             chHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHcC
Q 013230          365 KQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       365 ~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      .+.|||+ +|.+.+++++ |..|+............+......+.+...++++++||.+||..|     |+.|+++|
T Consensus       274 ~~~Di~s-lG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  349 (359)
T 3vhe_A          274 IQSDVWS-FGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  349 (359)
T ss_dssp             HHHHHHH-HHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             chhhhhh-HHHHHHHHHhcCCCCCCccchhHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHH
Confidence            7889999 9999999998 888886543333334444434455556778999999999999999     99999876

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=6.3e-34  Score=280.39  Aligned_cols=246  Identities=20%  Similarity=0.278  Sum_probs=190.0

Q ss_pred             CcceEEeccccceEEEEece-------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          134 PENIVKVGEGTFGEAFLAGN-------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~-------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      |++++.||+|+||.||+|++       ||+|++.....      .......+.+|+.+++.+..++|     ||    |+
T Consensus        13 y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~------~~~~~~~~~~e~~~l~~l~~~~h-----~~----i~   77 (326)
T 1blx_A           13 YECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTG------EEGMPLSTIREVAVLRHLETFEH-----PN----VV   77 (326)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBC------TTSCBCTHHHHHHHHHHHHHTCC-----TT----BC
T ss_pred             eeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcc------cccCCchhhHHHHHHHhhhccCC-----CC----eE
Confidence            49999999999999999963       89998875421      11222456789999888853333     77    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVT  280 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil  280 (447)
                      ++++++.....                         .....+|+||||+. | +|.+++.      +++..++.++.||+
T Consensus        78 ~~~~~~~~~~~-------------------------~~~~~~~lv~e~~~-~-~L~~~l~~~~~~~~~~~~~~~~~~qi~  130 (326)
T 1blx_A           78 RLFDVCTVSRT-------------------------DRETKLTLVFEHVD-Q-DLTTYLDKVPEPGVPTETIKDMMFQLL  130 (326)
T ss_dssp             CEEEEEEEEEC-------------------------SSEEEEEEEEECCS-C-BHHHHHHHSCTTCSCHHHHHHHHHHHH
T ss_pred             eeeeeeeeccc-------------------------CCCceEEEEEecCC-C-CHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence            99999753210                         12456899999998 6 8888875      89999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDPE  356 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~pe  356 (447)
                      .||.|||+ .||+||||||+|||++.++                    .+||+|||+++.....    .......|++||
T Consensus       131 ~~l~~lH~-~gi~H~dlkp~Nili~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE  189 (326)
T 1blx_A          131 RGLDFLHS-HRVVHRDLKPQNILVTSSG--------------------QIKLADFGLARIYSFQMALTSVVVTLWYRAPE  189 (326)
T ss_dssp             HHHHHHHH-TTCCCCCCCGGGEEECTTC--------------------CEEECSCCSCCCCCGGGGGCCCCCCCTTCCHH
T ss_pred             HHHHHHHH-CCceeccCCHHHeEEcCCC--------------------CEEEecCcccccccCCCCccccccccceeCHH
Confidence            99999999 9999999999999999887                    7999999999865432    222345589999


Q ss_pred             CCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh-----ccCCC--------------------CCcc
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL-----KKTFD--------------------RSSK  411 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~-----~~~~~--------------------~~~~  411 (447)
                      ++.+.....+.|+|+ +|.+.++++++..|+........+..++..     ...++                    ....
T Consensus       190 ~~~~~~~~~~~Di~s-lG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (326)
T 1blx_A          190 VLLQSSYATPVDLWS-VGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTD  268 (326)
T ss_dssp             HHTTCCCCTHHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCS
T ss_pred             HHhcCCCCcchhHHH-HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCcccCccccccchhhhcccCcchhhhcccc
Confidence            998877788889999 999999999999988654333333332210     00000                    1235


Q ss_pred             chHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          412 DERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       412 ~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                      ++.++++||.+||..|     |+.|+|+||||+++..
T Consensus       269 ~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  305 (326)
T 1blx_A          269 IDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLER  305 (326)
T ss_dssp             CCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTCCC
T ss_pred             CCHHHHHHHHHHcCCCcccCCCHHHHhcCccccccch
Confidence            7899999999999999     9999999999998754

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=5.8e-34  Score=278.06  Aligned_cols=233  Identities=20%  Similarity=0.271  Sum_probs=185.3

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|++      ||+|++.....     ......+.+.+|+.+++.++|        ||    |++
T Consensus        13 y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~~~~~e~~~l~~l~h--------p~----iv~   75 (294)
T 4eqm_A           13 YKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPR-----EKEETLKRFEREVHNSSQLSH--------QN----IVS   75 (294)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSS-----CCHHHHHHHHHHHHHHTTCCB--------TT----BCC
T ss_pred             EEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCcc-----ccHHHHHHHHHHHHHHhcCCC--------CC----Cce
Confidence            49999999999999999973      99999875432     333445778999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++..                              .+.+|+||||+.|| +|.+++.    +++..++.++.||+.||
T Consensus        76 ~~~~~~~------------------------------~~~~~lv~e~~~g~-~L~~~l~~~~~~~~~~~~~~~~qi~~~l  124 (294)
T 4eqm_A           76 MIDVDEE------------------------------DDCYYLVMEYIEGP-TLSEYIESHGPLSVDTAINFTNQILDGI  124 (294)
T ss_dssp             EEEEEEC------------------------------SSEEEEEEECCCSC-BHHHHHHHHCSCCHHHHHHHHHHHHHHH
T ss_pred             EEEeeee------------------------------CCeEEEEEeCCCCC-CHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            9998543                              56799999999988 9999886    89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------EEEEecCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------IFFLDLSQDPEL  357 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------~i~~~~~~~pel  357 (447)
                      +|||+ .||+||||||+|||++.++                    .+||+|||+|+......      ......|++||.
T Consensus       125 ~~lH~-~~i~H~Dlkp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~  183 (294)
T 4eqm_A          125 KHAHD-MRIVHRDIKPQNILIDSNK--------------------TLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQ  183 (294)
T ss_dssp             HHHHH-TTCCCCCCCGGGEEECTTS--------------------CEEECCCSSSTTC-------------CCSSCCHHH
T ss_pred             HHHHH-CCcccCCCCHHHEEECCCC--------------------CEEEEeCCCccccccccccccCccccCccccCHhH
Confidence            99999 9999999999999999887                    79999999998654331      223455899999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCC-----CCccchHHHHHHHHHhcccc-----
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFD-----RSSKDERDLRSLKKRLDKYN-----  427 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~-----~~~~~s~~l~dLl~~mL~~d-----  427 (447)
                      +.+...+...|+|+ +|.+.+++++|..||............+.  ...+     ....+++.+.++|.+||..|     
T Consensus       184 ~~~~~~~~~~Di~s-lG~~l~~ll~g~~pf~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~  260 (294)
T 4eqm_A          184 AKGEATDECTDIYS-IGIVLYEMLVGEPPFNGETAVSIAIKHIQ--DSVPNVTTDVRKDIPQSLSNVILRATEKDKANRY  260 (294)
T ss_dssp             HHTCCCCTTHHHHH-HHHHHHHHHHSSCSSCSSCHHHHHHHHHS--SCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSC
T ss_pred             hcCCCCCchHhHHH-HHHHHHHHHhCCCCCCCCChHHHHHHHhh--ccCCCcchhcccCCCHHHHHHHHHHhcCCHhHcc
Confidence            98877777889999 99999999999999976544333333332  1111     13457899999999999999     


Q ss_pred             CHHHHHcCCCC
Q 013230          428 SAKEAIFDPFF  438 (447)
Q Consensus       428 sa~elL~HPff  438 (447)
                      +..+.+.+.|.
T Consensus       261 ~~~~~l~~~l~  271 (294)
T 4eqm_A          261 KTIQEMKDDLS  271 (294)
T ss_dssp             SSHHHHHHHHH
T ss_pred             ccHHHHHHHHH
Confidence            44455555443

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=4.1e-34  Score=281.90  Aligned_cols=243  Identities=17%  Similarity=0.160  Sum_probs=178.3

Q ss_pred             CCcceEEeccccceEEEEec---------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccc
Q 013230          133 DPENIVKVGEGTFGEAFLAG---------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACT  203 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~---------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~  203 (447)
                      .|++++.||+|+||.||+|+         .||+|++....      ......+.+.+|+.+++.++|        ||   
T Consensus        24 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------~~---   86 (323)
T 3qup_A           24 QFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADI------IASSDIEEFLREAACMKEFDH--------PH---   86 (323)
T ss_dssp             -CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------------CHHHHHHHHHHHHHTTCCC--------TT---
T ss_pred             HeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccc------cCHHHHHHHHHHHHHHHHCCC--------Cc---
Confidence            45999999999999999997         38999886442      123345778999999999988        88   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----------CCHHHHH
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----------LNINEAR  273 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----------l~~~~~~  273 (447)
                       |+++++++...+..                        ......|+||||+.+| +|.+++.          +++..++
T Consensus        87 -iv~~~~~~~~~~~~------------------------~~~~~~~~v~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~  140 (323)
T 3qup_A           87 -VAKLVGVSLRSRAK------------------------GRLPIPMVILPFMKHG-DLHAFLLASRIGENPFNLPLQTLV  140 (323)
T ss_dssp             -BCCCCEEEECC-------------------------------CEEEEEECCTTC-BHHHHHHHHHC---CCCCCHHHHH
T ss_pred             -eehhhceeeccccc------------------------cCCCccEEEEEeccCC-cHHHHHHhhhccccccccCHHHHH
Confidence             99999996542210                        0012359999999988 9998873          8899999


Q ss_pred             HHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----E--
Q 013230          274 SLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----I--  346 (447)
Q Consensus       274 ~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~--  346 (447)
                      .++.||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+|+......     +  
T Consensus       141 ~i~~qi~~al~~LH~-~~ivH~Dikp~NIli~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~  199 (323)
T 3qup_A          141 RFMVDIACGMEYLSS-RNFIHRDLAARNCMLAEDM--------------------TVCVADFGLSRKIYSGDYYRQGCAS  199 (323)
T ss_dssp             HHHHHHHHHHHHHHH-TTCCCSCCSGGGEEECTTS--------------------CEEECCCCC----------------
T ss_pred             HHHHHHHHHHHHHHc-CCcccCCCCcceEEEcCCC--------------------CEEEeeccccccccccccccccccc
Confidence            999999999999999 9999999999999999887                    79999999998754431     1  


Q ss_pred             EEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcc
Q 013230          347 FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDK  425 (447)
Q Consensus       347 i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~  425 (447)
                      .....|++||.+.+...+.+.|||+ +|.+.++++. +..|+........... +......+.+...++++++||++||.
T Consensus       200 ~~~~~y~aPE~~~~~~~~~~~Di~s-lG~il~ell~~g~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~li~~~l~  277 (323)
T 3qup_A          200 KLPVKWLALESLADNLYTVHSDVWA-FGVTMWEIMTRGQTPYAGIENAEIYNY-LIGGNRLKQPPECMEEVYDLMYQCWS  277 (323)
T ss_dssp             -CCGGGCCHHHHHHCCCCHHHHHHH-HHHHHHHHHTTSCCTTTTCCGGGHHHH-HHTTCCCCCCTTCCHHHHHHHHHTTC
T ss_pred             cCcccccCchhhcCCCCCCccchhh-HHHHHHHHHhCCCCCccccChHHHHHH-HhcCCCCCCCCccCHHHHHHHHHHcc
Confidence            1122488999998877777889999 9999999998 7888765433222222 22233455566789999999999999


Q ss_pred             cc-----C-------HHHHHcCCCCCCC
Q 013230          426 YN-----S-------AKEAIFDPFFSDL  441 (447)
Q Consensus       426 ~d-----s-------a~elL~HPff~~~  441 (447)
                      .|     |       .++++.|||+...
T Consensus       278 ~dp~~Rps~~~l~~~l~~~l~~~~~~~~  305 (323)
T 3qup_A          278 ADPKQRPSFTCLRMELENILGHLSVLST  305 (323)
T ss_dssp             SSGGGSCCHHHHHHHHHHHHHC------
T ss_pred             CChhhCcCHHHHHHHHHHHHHHhhhcCC
Confidence            99     6       7888999999865

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=7.9e-35  Score=283.41  Aligned_cols=241  Identities=21%  Similarity=0.237  Sum_probs=170.4

Q ss_pred             CCcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||+|+||.||+|+      .||+|++....       .....+.+.+|+.+++.++|        ||    |+
T Consensus        16 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-------~~~~~~~~~~e~~~l~~l~h--------~~----i~   76 (303)
T 2vwi_A           16 DYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEK-------CQTSMDELLKEIQAMSQCHH--------PN----IV   76 (303)
T ss_dssp             CCEEEEECC---CCCEEEEEC----CEEEEECCC-----------------------CCCCCCC--------TT----BC
T ss_pred             hhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhh-------cchhHHHHHHHHHHHhhcCC--------CC----Ee
Confidence            45999999999999999996      39999876432       12234567899999999987        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------------CCHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------------LNINEARS  274 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------------l~~~~~~~  274 (447)
                      ++++++..                              ++..|+||||+.+| +|.+++.            +++..++.
T Consensus        77 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~~~  125 (303)
T 2vwi_A           77 SYYTSFVV------------------------------KDELWLVMKLLSGG-SVLDIIKHIVAKGEHKSGVLDESTIAT  125 (303)
T ss_dssp             CEEEEEES------------------------------SSCEEEEEECCTTC-BHHHHHHHHHHTTTTTTCSSCHHHHHH
T ss_pred             eEEEEEee------------------------------cCCcEEEehhccCC-chHHHHHHHhhccccccCCCCHHHHHH
Confidence            99998653                              45699999999988 9988874            89999999


Q ss_pred             HHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC---------
Q 013230          275 LLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED---------  345 (447)
Q Consensus       275 i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g---------  345 (447)
                      ++.||+.||.|||+ .||+||||||+|||++.++                    .+||+|||+++.....+         
T Consensus       126 i~~qi~~~l~~lH~-~~i~H~dl~p~Nil~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~  184 (303)
T 2vwi_A          126 ILREVLEGLEYLHK-NGQIHRDVKAGNILLGEDG--------------------SVQIADFGVSAFLATGGDITRNKVRK  184 (303)
T ss_dssp             HHHHHHHHHHHHHH-TTCCCCCCSGGGEEECTTC--------------------CEEECCCHHHHHCC------------
T ss_pred             HHHHHHHHHHHHHh-CCCCCCCCChhhEEEcCCC--------------------CEEEEeccchheeccCCCccchhhhc
Confidence            99999999999999 9999999999999999887                    79999999997654322         


Q ss_pred             -EEEEecCCCCCCCCC-CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc-cCC-------CCCccchHH
Q 013230          346 -IFFLDLSQDPELFSG-PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK-KTF-------DRSSKDERD  415 (447)
Q Consensus       346 -~i~~~~~~~pelf~g-~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~-~~~-------~~~~~~s~~  415 (447)
                       ......|++||++.+ .....+.|+|+ +|.+.++++++..|+............+... ...       .....++.+
T Consensus       185 ~~~~~~~y~aPE~~~~~~~~~~~~Di~s-lG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (303)
T 2vwi_A          185 TFVGTPCWMAPEVMEQVRGYDFKADIWS-FGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLETGVQDKEMLKKYGKS  263 (303)
T ss_dssp             ---CCCTTCCHHHHHHHHCCCTHHHHHH-HHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCCCTTC-----CCCCCCCHH
T ss_pred             ccCCCccccCHHHhccccCCCchhhHHH-HHHHHHHHHhCCCCCccCchhhHHHHHhccCCCccccccccchhhhhhhHH
Confidence             122334888988865 34566779999 9999999999998886532222222222111 011       112457889


Q ss_pred             HHHHHHHhcccc-----CHHHHHcCCCCCCCCCCC
Q 013230          416 LRSLKKRLDKYN-----SAKEAIFDPFFSDLIVDR  445 (447)
Q Consensus       416 l~dLl~~mL~~d-----sa~elL~HPff~~~~~~~  445 (447)
                      +++||.+||..|     |+.|+++||||++....+
T Consensus       264 ~~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~~~~  298 (303)
T 2vwi_A          264 FRKMISLCLQKDPEKRPTAAELLRHKFFQKAKNKE  298 (303)
T ss_dssp             HHHHHHHHCCSSGGGSCCHHHHHTSTTC-------
T ss_pred             HHHHHHHHccCChhhCcCHHHHhhChhhhcCCCCc
Confidence            999999999999     999999999999875543

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=3.6e-34  Score=287.39  Aligned_cols=258  Identities=17%  Similarity=0.212  Sum_probs=188.0

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|++++.||+|+||.||+|++      ||+|++...         ....+.+.+|+.++++++|....... .-.|++|+
T Consensus        20 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~---------~~~~~~~~~e~~~l~~l~~~~~~~~~-~~~~~~i~   89 (373)
T 1q8y_A           20 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD---------KVYTEAAEDEIKLLQRVNDADNTKED-SMGANHIL   89 (373)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC---------HHHHHHHHHHHHHHHHHHHTCCSHHH-HHHHTTBC
T ss_pred             eEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC---------ccchhhhhHHHHHHHHhhcccccchh-ccccchHH
Confidence            459999999999999999973      999998632         12346678999999999852100000 00134499


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVT  280 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil  280 (447)
                      ++++++...+..                          ...+++||||+ +| +|.+++.      +++..++.++.||+
T Consensus        90 ~~~~~~~~~~~~--------------------------~~~~~lv~e~~-~~-~L~~~~~~~~~~~~~~~~~~~i~~qi~  141 (373)
T 1q8y_A           90 KLLDHFNHKGPN--------------------------GVHVVMVFEVL-GE-NLLALIKKYEHRGIPLIYVKQISKQLL  141 (373)
T ss_dssp             CCCEEEEEEETT--------------------------EEEEEEEECCC-CE-EHHHHHHHTTTSCCCHHHHHHHHHHHH
T ss_pred             HHHHHhhccCCC--------------------------CceEEEEEecC-CC-CHHHHHHHhhccCCcHHHHHHHHHHHH
Confidence            999997653311                          23589999999 66 8988875      89999999999999


Q ss_pred             HHHHHHHHhC-CeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--CEEEEecCCCCCC
Q 013230          281 AGLAVAEAAY-EFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--DIFFLDLSQDPEL  357 (447)
Q Consensus       281 ~gL~ylH~~~-~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--g~i~~~~~~~pel  357 (447)
                      .||+|||+ . ||+||||||+|||++.++..              .....+||+|||+|+.....  .......|++||+
T Consensus       142 ~aL~~lH~-~~~ivH~Dikp~NIll~~~~~~--------------~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~  206 (373)
T 1q8y_A          142 LGLDYMHR-RCGIIHTDIKPENVLMEIVDSP--------------ENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEV  206 (373)
T ss_dssp             HHHHHHHH-TTCEECSCCSGGGEEEEEEETT--------------TTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHH
T ss_pred             HHHHHHHh-cCCEEecCCChHHeEEeccCCC--------------cCcceEEEcccccccccCCCCCCCCCCccccCcHH
Confidence            99999999 7 99999999999999754310              00126999999999876443  2233455899999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHH---------HHHHHHHHh---------------------------
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLW---------LVYLVDMLL---------------------------  401 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~---------~~~~~~~l~---------------------------  401 (447)
                      +.+...+.+.|||+ +|.+.+++++|..|+.....         ...+...+.                           
T Consensus       207 ~~~~~~~~~~Di~s-lG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  285 (373)
T 1q8y_A          207 LLGAPWGCGADIWS-TACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNIS  285 (373)
T ss_dssp             HHTCCCCTHHHHHH-HHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCC
T ss_pred             HhCCCCCchHhHHH-HHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccc
Confidence            98877888889999 99999999999988863211         011111000                           


Q ss_pred             ----------hccCCCCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          402 ----------LKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       402 ----------~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                                ....+..+...+.++++||++||+.|     ||+|+|+||||++....
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~~  343 (373)
T 1q8y_A          286 KLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLGM  343 (373)
T ss_dssp             CCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCTTC
T ss_pred             cccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHHhhChhhhcccCc
Confidence                      00112233567889999999999999     99999999999986543

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=5.4e-34  Score=282.50  Aligned_cols=228  Identities=18%  Similarity=0.155  Sum_probs=185.4

Q ss_pred             CcceEEeccccceEEEEece---------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          134 PENIVKVGEGTFGEAFLAGN---------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~---------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      |++.+.||+|+||.||+|++         ||+|++....       .....+.+.+|+.+++.++|        ||    
T Consensus        51 y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------~~----  111 (325)
T 3kul_A           51 IHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGY-------TERQRRDFLSEASIMGQFDH--------PN----  111 (325)
T ss_dssp             EEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTC-------CHHHHHHHHHHHHHHTTCCC--------TT----
T ss_pred             eEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCC-------CHHHHHHHHHHHHHHHhCCC--------CC----
Confidence            49999999999999999974         9999987431       22344678999999999988        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQV  279 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qi  279 (447)
                      |+++++++..                              .+..|+||||+.|| +|.+++.     +++..++.++.||
T Consensus       112 iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~i~~qi  160 (325)
T 3kul_A          112 IIRLEGVVTR------------------------------GRLAMIVTEYMENG-SLDTFLRTHDGQFTIMQLVGMLRGV  160 (325)
T ss_dssp             BCCEEEEECG------------------------------GGCCEEEEECCTTC-BHHHHHHTTTTCSCHHHHHHHHHHH
T ss_pred             CCcEEEEEEe------------------------------CCccEEEeeCCCCC-cHHHHHHhcccCCCHHHHHHHHHHH
Confidence            9999998532                              45689999999988 9999984     8999999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE--------EEEec
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI--------FFLDL  351 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~--------i~~~~  351 (447)
                      +.||+|||+ .||+||||||+|||++.++                    .+||+|||+|+.......        .....
T Consensus       161 ~~~L~~LH~-~~ivH~Dlkp~NIll~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~  219 (325)
T 3kul_A          161 GAGMRYLSD-LGYVHRDLAARNVLVDSNL--------------------VCKVSDFGLSRVLEDDPDAAYTTTGGKIPIR  219 (325)
T ss_dssp             HHHHHHHHH-TTEECSCCSGGGEEECTTC--------------------CEEECCCSSCEECC----CCEECC---CCGG
T ss_pred             HHHHHHHHH-CCeeCCCCCcceEEECCCC--------------------CEEECCCCcccccccCccceeeccCCCCccc
Confidence            999999999 9999999999999999887                    799999999987654311        11123


Q ss_pred             CCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc---
Q 013230          352 SQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN---  427 (447)
Q Consensus       352 ~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d---  427 (447)
                      |++||.+.+...+.+.|||+ +|.+.++++. +..|+............. .....+.+..+++++.+||.+||..|   
T Consensus       220 y~aPE~~~~~~~~~~~Di~s-lG~il~ell~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~l~~dp~~  297 (325)
T 3kul_A          220 WTAPEAIAFRTFSSASDVWS-FGVVMWEVLAYGERPYWNMTNRDVISSVE-EGYRLPAPMGCPHALHQLMLDCWHKDRAQ  297 (325)
T ss_dssp             GSCHHHHHHCEECHHHHHHH-HHHHHHHHHTTSCCTTTTSCHHHHHHHHH-TTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             ccCHhHhcCCCCCcHHHHHH-HHHHHHHHHcCCCCCcccCCHHHHHHHHH-cCCCCCCCCCcCHHHHHHHHHHccCChhh
Confidence            89999998777777789999 9999999998 889987654444333332 23345556778999999999999999   


Q ss_pred             --CHHHHHc
Q 013230          428 --SAKEAIF  434 (447)
Q Consensus       428 --sa~elL~  434 (447)
                        |+.|+++
T Consensus       298 Rps~~eil~  306 (325)
T 3kul_A          298 RPRFSQIVS  306 (325)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence              8888774

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=5.4e-34  Score=274.75  Aligned_cols=239  Identities=21%  Similarity=0.231  Sum_probs=190.7

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|++      ||+|++.....      .....+.+.+|+.+++.++|        ||    |++
T Consensus         8 y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~------~~~~~~~~~~e~~~l~~l~h--------~~----i~~   69 (279)
T 2w5a_A            8 YEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSM------TEAEKQMLVSEVNLLRELKH--------PN----IVR   69 (279)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTC------CHHHHHHHHHHHHHHHHCCC--------TT----BCC
T ss_pred             eeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccC------CHHHHHHHHHHHHHHHhcCC--------CC----CCe
Confidence            49999999999999999974      99999875432      22345678999999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQV  279 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Qi  279 (447)
                      +++++....                            ...+|+||||+.+| +|.+++.        +++..++.++.||
T Consensus        70 ~~~~~~~~~----------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~i~~~i  120 (279)
T 2w5a_A           70 YYDRIIDRT----------------------------NTTLYIVMEYCEGG-DLASVITKGTKERQYLDEEFVLRVMTQL  120 (279)
T ss_dssp             EEEEEEEGG----------------------------GTEEEEEEECCTTE-EHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             EEEEEecCC----------------------------CceEEEEEeCCCCC-CHHHHHHhhcccCCCCCHHHHHHHHHHH
Confidence            999865421                            35699999999988 9999875        8999999999999


Q ss_pred             HHHHHHHHHhCC-----eeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEE
Q 013230          280 TAGLAVAEAAYE-----FEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFL  349 (447)
Q Consensus       280 l~gL~ylH~~~~-----iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~  349 (447)
                      +.||+|||+ .|     |+||||||+|||++.++                    .+||+|||+++......     ....
T Consensus       121 ~~~l~~lH~-~~~~~~~ivH~dl~p~NIl~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~  179 (279)
T 2w5a_A          121 TLALKECHR-RSDGGHTVLHRDLKPANVFLDGKQ--------------------NVKLGDFGLARILNHDTSFAKTFVGT  179 (279)
T ss_dssp             HHHHHHHHH-HC------CCCCCSGGGEEECSSS--------------------CEEECCCCHHHHC---CHHHHHHHSC
T ss_pred             HHHHHHHhc-ccCCCCeeEEeccchhhEEEcCCC--------------------CEEEecCchheeeccccccccccCCC
Confidence            999999999 88     99999999999999887                    79999999998754431     1123


Q ss_pred             ecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc--
Q 013230          350 DLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       350 ~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d--  427 (447)
                      ..|++||.+.+...+.+.|+|+ +|.+.++++++..|+............. .....+.+..++.++++||.+||..|  
T Consensus       180 ~~y~aPE~~~~~~~~~~~Di~s-lG~il~~l~~g~~p~~~~~~~~~~~~i~-~~~~~~~~~~~~~~l~~li~~~l~~~p~  257 (279)
T 2w5a_A          180 PYYMSPEQMNRMSYNEKSDIWS-LGCLLYELCALMPPFTAFSQKELAGKIR-EGKFRRIPYRYSDELNEIITRMLNLKDY  257 (279)
T ss_dssp             CTTCCHHHHHCC-CCHHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHH-HTCCCCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred             ccccChHHhccCCCCchhhHHH-HHHHHHHHHHCCCCCcccCHHHHHHHHh-hcccccCCcccCHHHHHHHHHHcCCCcc
Confidence            4488999998877777789999 9999999999998887643333322222 22222344568999999999999999  


Q ss_pred             ---CHHHHHcCCCCCCCC
Q 013230          428 ---SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 ---sa~elL~HPff~~~~  442 (447)
                         |++|+++|||+..-.
T Consensus       258 ~Rps~~~ll~~~~~~~~~  275 (279)
T 2w5a_A          258 HRPSVEEILENPLILEHH  275 (279)
T ss_dssp             GSCCHHHHHTSTTCCGGG
T ss_pred             cCCCHHHHHhChhhhhhc
Confidence               999999999998653

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=2e-33  Score=272.69  Aligned_cols=237  Identities=19%  Similarity=0.196  Sum_probs=183.9

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|.....||+|+||.||+|++      ||+|++....        ....+.+.+|+.+++.++|        ||    |+
T Consensus        23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--------~~~~~~~~~e~~~l~~l~h--------~~----iv   82 (295)
T 2clq_A           23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERD--------SRYSQPLHEEIALHKHLKH--------KN----IV   82 (295)
T ss_dssp             TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCC--------C---HHHHHHHHHHHTCCC--------TT----BC
T ss_pred             CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCc--------hHHHHHHHHHHHHHHhCCC--------CC----Ee
Confidence            346677999999999999973      9999887432        2334678999999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------CCHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------LNINEARSLLVQV  279 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------l~~~~~~~i~~Qi  279 (447)
                      ++++++..                              .+..|+||||+.+| +|.+++.       +++..++.++.||
T Consensus        83 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~qi  131 (295)
T 2clq_A           83 QYLGSFSE------------------------------NGFIKIFMEQVPGG-SLSALLRSKWGPLKDNEQTIGFYTKQI  131 (295)
T ss_dssp             CEEEEEEE------------------------------TTEEEEEEECCSEE-EHHHHHHHTTCCCTTCHHHHHHHHHHH
T ss_pred             eEeeEEEe------------------------------CCcEEEEEEeCCCC-CHHHHHHhhccCCCccHHHHHHHHHHH
Confidence            99998654                              46699999999977 9999875       5688999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEec-CCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSR-NDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQ  353 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~-~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~  353 (447)
                      +.||+|||+ .||+||||||+|||++. ++                    .+||+|||+++......     ......|+
T Consensus       132 ~~~l~~lH~-~~i~H~dl~p~Nil~~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~  190 (295)
T 2clq_A          132 LEGLKYLHD-NQIVHRDIKGDNVLINTYSG--------------------VLKISDFGTSKRLAGINPCTETFTGTLQYM  190 (295)
T ss_dssp             HHHHHHHHH-TTEECCCCSGGGEEEETTTC--------------------CEEECCTTTCEESCC-----CCCCCCGGGC
T ss_pred             HHHHHHHHh-CCEEccCCChhhEEEECCCC--------------------CEEEeecccccccCCCCCcccccCCCcccc
Confidence            999999999 99999999999999998 54                    79999999998765321     12233488


Q ss_pred             CCCCCCCCC--CCchHHHHHhhccCCcccccCCCCCChhHHHH-HHHHHHhhccCCCCCccchHHHHHHHHHhcccc---
Q 013230          354 DPELFSGPK--GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLV-YLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN---  427 (447)
Q Consensus       354 ~pelf~g~~--~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~-~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d---  427 (447)
                      +||++.+..  .....|+|+ +|.+.+++++|..|+....... ..............+..+++++++||.+||..|   
T Consensus       191 aPE~~~~~~~~~~~~~Di~s-lG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~  269 (295)
T 2clq_A          191 APEIIDKGPRGYGKAADIWS-LGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVHPEIPESMSAEAKAFILKCFEPDPDK  269 (295)
T ss_dssp             CHHHHHHGGGGCSHHHHHHH-HHHHHHHHHHTSCTTGGGSSHHHHHHHHHHHCCCCCCCTTSCHHHHHHHHHTTCSSTTT
T ss_pred             ChhhhcCCCCCCCcHHHHHH-HHHHHHHHHHCCCCccCCCchhHHHHhhccccccccccccCCHHHHHHHHHHccCChhh
Confidence            898886532  456679999 9999999999999986432111 111111112223335678999999999999999   


Q ss_pred             --CHHHHHcCCCCCCCC
Q 013230          428 --SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 --sa~elL~HPff~~~~  442 (447)
                        |++|+|+||||+...
T Consensus       270 Rps~~~ll~~~~~~~~~  286 (295)
T 2clq_A          270 RACANDLLVDEFLKVSS  286 (295)
T ss_dssp             SCCHHHHHTSGGGCC--
T ss_pred             CCCHHHHhcChhhhhcc
Confidence              999999999998653

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=6.2e-34  Score=287.44  Aligned_cols=229  Identities=19%  Similarity=0.253  Sum_probs=183.9

Q ss_pred             CcceEEeccccceEEEEece-------------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCC
Q 013230          134 PENIVKVGEGTFGEAFLAGN-------------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTL  199 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~-------------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~  199 (447)
                      |++.+.||+|+||.||+|++             ||+|++...       ......+.+.+|+.+++.+ +|        |
T Consensus        83 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~-------~~~~~~~~~~~E~~~l~~l~~h--------p  147 (370)
T 2psq_A           83 LTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDD-------ATEKDLSDLVSEMEMMKMIGKH--------K  147 (370)
T ss_dssp             EEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTT-------CBHHHHHHHHHHHHHHHHSCCC--------T
T ss_pred             CEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCC-------cCHHHHHHHHHHHHHHHHhcCC--------C
Confidence            49999999999999999963             899988643       2233456789999999999 67        7


Q ss_pred             CcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------------
Q 013230          200 NACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------------  266 (447)
Q Consensus       200 n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------------  266 (447)
                      |    |+++++++.                              .++.+|+||||+.+| +|.+++.             
T Consensus       148 n----Iv~~~~~~~------------------------------~~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~  192 (370)
T 2psq_A          148 N----IINLLGACT------------------------------QDGPLYVIVEYASKG-NLREYLRARRPPGMEYSYDI  192 (370)
T ss_dssp             T----BCCEEEEEC------------------------------SSSSCEEEEECCTTC-BHHHHHHHTCCC--------
T ss_pred             C----EeeEEEEEc------------------------------cCCCEEEEEEcCCCC-CHHHHHHhhCCccccccccc
Confidence            7    999999853                              256699999999988 9998874             


Q ss_pred             -------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeecccee
Q 013230          267 -------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSR  339 (447)
Q Consensus       267 -------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~  339 (447)
                             +++..++.++.||+.||+|||+ +||+||||||+|||++.++                    .+||+|||+|+
T Consensus       193 ~~~~~~~~~~~~~~~i~~qi~~aL~~LH~-~~ivHrDlkp~NIll~~~~--------------------~~kl~DFG~a~  251 (370)
T 2psq_A          193 NRVPEEQMTFKDLVSCTYQLARGMEYLAS-QKCIHRDLAARNVLVTENN--------------------VMKIADFGLAR  251 (370)
T ss_dssp             ---CCCCCCHHHHHHHHHHHHHHHHHHHH-TTEECSCCCGGGEEECTTC--------------------CEEECCCSSCE
T ss_pred             cccccccCCHHHHHHHHHHHHHHHHHHHh-CCeeccccchhhEEECCCC--------------------CEEEccccCCc
Confidence                   5788999999999999999999 9999999999999999887                    79999999998


Q ss_pred             ecCCCC-------EEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCcc
Q 013230          340 INTGED-------IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSK  411 (447)
Q Consensus       340 ~~~~~g-------~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~  411 (447)
                      ......       ......|++||++.+...+.+.|||+ +|++.+++++ |..|+......... ..+......+.+..
T Consensus       252 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws-lG~il~ellt~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~  329 (370)
T 2psq_A          252 DINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWS-FGVLMWEIFTLGGSPYPGIPVEELF-KLLKEGHRMDKPAN  329 (370)
T ss_dssp             ETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHH-HHHHHHHHHTTSCCSSTTCCGGGHH-HHHHTTCCCCCCTT
T ss_pred             ccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHH-HHHHHHHHHcCCCCCCCCCCHHHHH-HHHhcCCCCCCCCC
Confidence            654321       11123489999998877788889999 9999999998 87887654322222 22222334445567


Q ss_pred             chHHHHHHHHHhcccc-----CHHHHHcC
Q 013230          412 DERDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       412 ~s~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      .++++.+||.+||..|     |+.|++++
T Consensus       330 ~~~~l~~li~~~l~~dP~~Rpt~~ell~~  358 (370)
T 2psq_A          330 CTNELYMMMRDCWHAVPSQRPTFKQLVED  358 (370)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            8999999999999999     99998864

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=6.5e-34  Score=278.80  Aligned_cols=252  Identities=22%  Similarity=0.218  Sum_probs=181.6

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|++      ||+|++....        ....+.+.+|+.+++.++|        ||    |++
T Consensus        13 y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--------~~~~~~~~~e~~~l~~l~h--------~~----iv~   72 (320)
T 2i6l_A           13 YMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTD--------PQSVKHALREIKIIRRLDH--------DN----IVK   72 (320)
T ss_dssp             EEEEEECC-----CEEEEEETTTTEEEEEEEEECCS--------HHHHHHHHHHHHHHHTCCC--------TT----BCC
T ss_pred             eeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCC--------hHHHHHHHHHHHHHHhcCC--------CC----eeE
Confidence            49999999999999999973      9999887432        2344678999999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~  284 (447)
                      +++++...+...                ..+.......+.+|+||||+. | +|.+++.   +++..++.++.||+.||+
T Consensus        73 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~lv~e~~~-~-~L~~~~~~~~~~~~~~~~~~~qi~~~l~  134 (320)
T 2i6l_A           73 VFEILGPSGSQL----------------TDDVGSLTELNSVYIVQEYME-T-DLANVLEQGPLLEEHARLFMYQLLRGLK  134 (320)
T ss_dssp             EEEEECTTSCBC----------------CC----CCSCSEEEEEEECCS-E-EHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEecccccccc----------------ccccccccccCceeEEeeccC-C-CHHHHhhcCCccHHHHHHHHHHHHHHHH
Confidence            999853222100                000011233567999999997 6 8999887   899999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC--------EEEEecCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED--------IFFLDLSQDPE  356 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g--------~i~~~~~~~pe  356 (447)
                      |||+ .||+||||||+|||++.++.                   .+||+|||+++......        ......|++||
T Consensus       135 ~lH~-~~i~H~dlkp~Nil~~~~~~-------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE  194 (320)
T 2i6l_A          135 YIHS-ANVLHRDLKPANLFINTEDL-------------------VLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPR  194 (320)
T ss_dssp             HHHH-TTCBCCCCSGGGEEEETTTT-------------------EEEECCCTTCBCC--------CCCGGGSCCTTCCHH
T ss_pred             HHHh-CCEecCCCCHHHEEEcCCCC-------------------eEEEccCccccccCCCcccccccccccccccccCcH
Confidence            9999 99999999999999985532                   79999999998754321        11133488899


Q ss_pred             CCCC-CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhcc----------------------CCC------
Q 013230          357 LFSG-PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKK----------------------TFD------  407 (447)
Q Consensus       357 lf~g-~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~----------------------~~~------  407 (447)
                      .+.+ .....+.|+|+ +|.+.+++++|..|+............+....                      ..+      
T Consensus       195 ~~~~~~~~~~~~Di~s-lG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (320)
T 2i6l_A          195 LLLSPNNYTKAIDMWA-AGCIFAEMLTGKTLFAGAHELEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQ  273 (320)
T ss_dssp             HHHCTTCCCHHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHH
T ss_pred             HhcCcccCCchhhhHh-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhH
Confidence            7755 45566679999 99999999999988865433222222211000                      000      


Q ss_pred             CCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          408 RSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       408 ~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                      ....+++++++||++||..|     |++|+|+||||+....+
T Consensus       274 ~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~p  315 (320)
T 2i6l_A          274 LLPGISREAVDFLEQILTFSPMDRLTAEEALSHPYMSIYSFP  315 (320)
T ss_dssp             HSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTSHHHHTTCC-
T ss_pred             hcchhhHHHHHHHHHHcCCCccccCCHHHHhCCcccccccCc
Confidence            01347899999999999999     99999999999976543

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.3e-33  Score=280.81  Aligned_cols=231  Identities=19%  Similarity=0.200  Sum_probs=185.0

Q ss_pred             CcceEEeccccceEEEEece-----------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCc
Q 013230          134 PENIVKVGEGTFGEAFLAGN-----------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNA  201 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~-----------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~  201 (447)
                      |++.+.||+|+||.||+|++           ||+|++....       .....+.+.+|+.+++++ +|        || 
T Consensus        47 y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~~~E~~~l~~l~~h--------p~-  110 (344)
T 1rjb_A           47 LEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA-------DSSEREALMSELKMMTQLGSH--------EN-  110 (344)
T ss_dssp             EEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC-------------CHHHHHHHHHHHHHCCC--------TT-
T ss_pred             ceeeeeecCCCCceeEEeeeeccccCCcceEEEEEeccccc-------CHHHHHHHHHHHHHHHhhcCC--------CC-
Confidence            49999999999999999973           9999987432       223447789999999999 77        77 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------------
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------------  266 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------------  266 (447)
                         |+++++++..                              .+.+|+||||+.+| +|.+++.               
T Consensus       111 ---iv~~~~~~~~------------------------------~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~~~  156 (344)
T 1rjb_A          111 ---IVNLLGACTL------------------------------SGPIYLIFEYCCYG-DLLNYLRSKREKFSEDEIEYEN  156 (344)
T ss_dssp             ---BCCEEEEECS------------------------------SSSCEEEEECCTTC-BHHHHHHTTTTCC---------
T ss_pred             ---eeeEEEEEee------------------------------CCccEEEEecCCCC-cHHHHHhhccccccccccchhh
Confidence               9999998532                              46699999999988 9998874               


Q ss_pred             ------------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEee
Q 013230          267 ------------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIID  334 (447)
Q Consensus       267 ------------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~D  334 (447)
                                  +++..++.++.||+.||+|||+ .||+||||||+|||++.++                    .+||+|
T Consensus       157 ~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~-~~ivH~Dikp~NIll~~~~--------------------~~kL~D  215 (344)
T 1rjb_A          157 QKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF-KSCVHRDLAARNVLVTHGK--------------------VVKICD  215 (344)
T ss_dssp             ------------CCHHHHHHHHHHHHHHHHHHHH-TTEEETTCSGGGEEEETTT--------------------EEEECC
T ss_pred             hcccccccccccCCHHHHHHHHHHHHHHHHHHHh-CCcccCCCChhhEEEcCCC--------------------cEEeCC
Confidence                        4788999999999999999999 9999999999999999887                    799999


Q ss_pred             ccceeecCCC-------CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCC
Q 013230          335 FTLSRINTGE-------DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTF  406 (447)
Q Consensus       335 FGla~~~~~~-------g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~  406 (447)
                      ||+|+.....       .......|++||.+.+...+...|||+ +|.+.+++++ |..|+............+......
T Consensus       216 fg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~s-lG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~  294 (344)
T 1rjb_A          216 FGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWS-YGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKM  294 (344)
T ss_dssp             CGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHH-HHHHHHHHTTTSCCSSTTCCCSHHHHHHHHTTCCC
T ss_pred             CccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHH-HHHHHHHHHcCCCCCcccCCcHHHHHHHHhcCCCC
Confidence            9999865432       122233489999998777777889999 9999999997 888886543333333334333344


Q ss_pred             CCCccchHHHHHHHHHhcccc-----CHHHHHcCC
Q 013230          407 DRSSKDERDLRSLKKRLDKYN-----SAKEAIFDP  436 (447)
Q Consensus       407 ~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HP  436 (447)
                      +.+...++++.+||.+||..|     |+.|+++|-
T Consensus       295 ~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l  329 (344)
T 1rjb_A          295 DQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFL  329 (344)
T ss_dssp             CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHH
Confidence            555678999999999999999     999998763

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1.1e-33  Score=271.54  Aligned_cols=228  Identities=18%  Similarity=0.246  Sum_probs=186.7

Q ss_pred             CCcceEEeccccceEEEEece-----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN-----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~-----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      +|++++.||+|+||.||+|++     ||+|++.....         ..+.+.+|+.++++++|        ||    |++
T Consensus        11 ~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~---------~~~~~~~E~~~l~~l~h--------~~----i~~   69 (269)
T 4hcu_A           11 ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM---------SEEDFIEEAEVMMKLSH--------PK----LVQ   69 (269)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB---------CHHHHHHHHHHHHTCCC--------TT----BCC
T ss_pred             hceeeheecCCCccEEEEEEecCCCeEEEEEeccccc---------CHHHHHHHHHHHHhCCC--------CC----Eee
Confidence            349999999999999999974     99999874321         23568999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++.                              .++..|+||||+.+| +|.+++.     +++..++.++.|++.|
T Consensus        70 ~~~~~~------------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~i~~~i~~~  118 (269)
T 4hcu_A           70 LYGVCL------------------------------EQAPICLVFEFMEHG-CLSDYLRTQRGLFAAETLLGMCLDVCEG  118 (269)
T ss_dssp             EEEEEC------------------------------SSSSEEEEEECCTTC-BHHHHHHTTTTCCCHHHHHHHHHHHHHH
T ss_pred             EEEEEe------------------------------cCCceEEEEEeCCCC-cHHHHHHhcCcccCHHHHHHHHHHHHHH
Confidence            999853                              256699999999988 9999885     8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------CEEEEecCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------DIFFLDLSQDPE  356 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g~i~~~~~~~pe  356 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+|+.....      +......|++||
T Consensus       119 l~~lH~-~~i~H~dikp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE  177 (269)
T 4hcu_A          119 MAYLEE-ACVIHRDLAARNCLVGENQ--------------------VIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPE  177 (269)
T ss_dssp             HHHHHH-TTCCCSCCCGGGEEECGGG--------------------CEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHH
T ss_pred             HHHHHh-CCeecCCcchheEEEcCCC--------------------CEEeccccccccccccccccccCcccccccCCHH
Confidence            999999 9999999999999998887                    7999999999865332      222223488999


Q ss_pred             CCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      .+.+...+.+.|+|+ +|.+.+++++ +..|+.............. ......+...++++.+|+++||..|     |++
T Consensus       178 ~~~~~~~~~~~Di~s-lG~~l~~ll~~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  255 (269)
T 4hcu_A          178 VFSFSRYSSKSDVWS-FGVLMWEVFSEGKIPYENRSNSEVVEDIST-GFRLYKPRLASTHVYQIMNHCWRERPEDRPAFS  255 (269)
T ss_dssp             HHHHCCCCHHHHHHH-HHHHHHHHHTTSCCTTTTCCHHHHHHHHHT-TCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HhcCCCCCchhhhHH-HHHHHHHHhcCCCCCCCCCCHHHHHHHHhc-CccCCCCCcCCHHHHHHHHHHccCCcccCcCHH
Confidence            998777777889999 9999999998 8888876544444443332 2233445667999999999999999     999


Q ss_pred             HHHcC
Q 013230          431 EAIFD  435 (447)
Q Consensus       431 elL~H  435 (447)
                      |+++|
T Consensus       256 ~ll~~  260 (269)
T 4hcu_A          256 RLLRQ  260 (269)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99876

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=3.7e-33  Score=267.52  Aligned_cols=228  Identities=18%  Similarity=0.231  Sum_probs=186.2

Q ss_pred             CCcceEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          133 DPENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      +|++++.||+|+||.||+|+     .||+|++....         ...+.+.+|+.+++.++|        ||    |++
T Consensus         9 ~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~---------~~~~~~~~E~~~l~~l~h--------~~----i~~   67 (268)
T 3sxs_A            9 EITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGS---------MSEDEFFQEAQTMMKLSH--------PK----LVK   67 (268)
T ss_dssp             GEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTT---------BCHHHHHHHHHHHHHCCC--------TT----BCC
T ss_pred             heeeeeeeccCCCceEEEEEecCceeEEEEEeccCC---------CcHHHHHHHHHHHHhCCC--------CC----Eee
Confidence            34999999999999999997     39999987432         133568999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++.                              .++..|+||||+.+| +|.+++.     +++..++.++.||+.|
T Consensus        68 ~~~~~~------------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~i~~qi~~~  116 (268)
T 3sxs_A           68 FYGVCS------------------------------KEYPIYIVTEYISNG-CLLNYLRSHGKGLEPSQLLEMCYDVCEG  116 (268)
T ss_dssp             EEEEEC------------------------------SSSSEEEEEECCTTC-BHHHHHHHHGGGCCHHHHHHHHHHHHHH
T ss_pred             EEEEEc------------------------------cCCceEEEEEccCCC-cHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            999842                              256699999999988 9999875     8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEEE------EecCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFF------LDLSQDPE  356 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i~------~~~~~~pe  356 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+|+.........      ...|++||
T Consensus       117 l~~lH~-~~i~H~dikp~Nil~~~~~--------------------~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE  175 (268)
T 3sxs_A          117 MAFLES-HQFIHRDLAARNCLVDRDL--------------------CVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPE  175 (268)
T ss_dssp             HHHHHH-TTEEESSCSGGGEEECTTC--------------------CEEECCTTCEEECCTTCEEECCSCCCCGGGCCHH
T ss_pred             HHHHHH-CCeecCCcCcceEEECCCC--------------------CEEEccCccceecchhhhhcccCCCcCcccCCHH
Confidence            999999 9999999999999999887                    79999999998765543221      12388999


Q ss_pred             CCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      .+.+...+.+.|+|+ +|.+.+++++ +..|+............. .......+...++++.+||.+||..|     |+.
T Consensus       176 ~~~~~~~~~~~Di~s-lG~il~~l~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~  253 (268)
T 3sxs_A          176 VFHYFKYSSKSDVWA-FGILMWEVFSLGKMPYDLYTNSEVVLKVS-QGHRLYRPHLASDTIYQIMYSCWHELPEKRPTFQ  253 (268)
T ss_dssp             HHHHSEEETTHHHHH-HHHHHHHHHTTTCCTTTTSCHHHHHHHHH-TTCCCCCCTTSCHHHHHHHHHTTCSSGGGSCCHH
T ss_pred             HHhccCCchhhhhHH-HHHHHHHHHcCCCCCccccChHHHHHHHH-cCCCCCCCCcChHHHHHHHHHHcCCChhhCcCHH
Confidence            988766677789999 9999999998 888886554433333333 22333445667899999999999999     999


Q ss_pred             HHHcC
Q 013230          431 EAIFD  435 (447)
Q Consensus       431 elL~H  435 (447)
                      |+++|
T Consensus       254 ~ll~~  258 (268)
T 3sxs_A          254 QLLSS  258 (268)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99876

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=8.9e-34  Score=280.05  Aligned_cols=238  Identities=16%  Similarity=0.163  Sum_probs=187.1

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||.||+|++      ||+|++.........  .......+.+|+.+++.++|          .|++|++
T Consensus        45 y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~--~~~~~~~~~~E~~~l~~l~~----------~~~~i~~  112 (320)
T 3a99_A           45 YQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWG--ELPNGTRVPMEVVLLKKVSS----------GFSGVIR  112 (320)
T ss_dssp             EEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEE--ECTTCCEEEHHHHHHHHHCS----------SSCSBCC
T ss_pred             eEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhh--hhhhhhHHHHHHHHHHhhcc----------CCCCceE
Confidence            49999999999999999973      999998765321100  00122345789999999975          1344999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++..                              .+..++|||++.+|.+|.+++.    +++..++.++.||+.||
T Consensus       113 ~~~~~~~------------------------------~~~~~lv~e~~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~~L  162 (320)
T 3a99_A          113 LLDWFER------------------------------PDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAV  162 (320)
T ss_dssp             EEEEEEC------------------------------SSEEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHH
T ss_pred             EEEEEec------------------------------CCcEEEEEEcCCCCccHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence            9999643                              5679999999987459999876    89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEe-cCCCccccccccCcccccccCCCcEEEeeccceeecCCCC---EEEEecCCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLS-RNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED---IFFLDLSQDPELFS  359 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~-~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g---~i~~~~~~~pelf~  359 (447)
                      +|||+ .||+||||||+|||++ .++                    .+||+|||+++......   ......|++||++.
T Consensus       163 ~~LH~-~~ivH~Dlkp~NIll~~~~~--------------------~~kL~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~  221 (320)
T 3a99_A          163 RHCHN-CGVLHRDIKDENILIDLNRG--------------------ELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIR  221 (320)
T ss_dssp             HHHHH-TTEECCCCSGGGEEEETTTT--------------------EEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHH
T ss_pred             HHHHH-CCcEeCCCCHHHEEEeCCCC--------------------CEEEeeCccccccccccccCCCCCccCCChHHhc
Confidence            99999 9999999999999998 444                    79999999998765432   12234488999887


Q ss_pred             CCCCC-chHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHH
Q 013230          360 GPKGD-KQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAI  433 (447)
Q Consensus       360 g~~~~-~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL  433 (447)
                      +.... .+.|||+ +|.+.++++++..|+....      ...  ......+..+++++++||++||..|     |++|++
T Consensus       222 ~~~~~~~~~Di~s-lG~il~el~~g~~pf~~~~------~~~--~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll  292 (320)
T 3a99_A          222 YHRYHGRSAAVWS-LGILLYDMVCGDIPFEHDE------EII--RGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQ  292 (320)
T ss_dssp             HSCBCHHHHHHHH-HHHHHHHHHHSSCSCCSHH------HHH--HCCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             cCCCCCccchHHh-HHHHHHHHHHCCCCCCChh------hhh--cccccccccCCHHHHHHHHHHccCChhhCcCHHHHh
Confidence            65543 4559999 9999999999999987532      111  1223334568899999999999999     999999


Q ss_pred             cCCCCCCCCC
Q 013230          434 FDPFFSDLIV  443 (447)
Q Consensus       434 ~HPff~~~~~  443 (447)
                      +||||++...
T Consensus       293 ~hp~~~~~~~  302 (320)
T 3a99_A          293 NHPWMQDVLL  302 (320)
T ss_dssp             TSGGGSSCCC
T ss_pred             cCHhhcCccC
Confidence            9999998764

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=2e-33  Score=269.61  Aligned_cols=242  Identities=18%  Similarity=0.152  Sum_probs=182.2

Q ss_pred             CCcceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          133 DPENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      +|++.+.||+|+||.||+|+    .+|+|++.....    .......+.+.+|+.+++.++|        ||    |+++
T Consensus         8 ~~~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~----~~~~~~~~~~~~e~~~l~~l~h--------~~----i~~~   71 (271)
T 3dtc_A            8 ELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPD----EDISQTIENVRQEAKLFAMLKH--------PN----IIAL   71 (271)
T ss_dssp             SEEEEEEEEEETTEEEEEEEETTEEEEEEEC--------------CHHHHHHHHHHHHHCCC--------TT----BCCE
T ss_pred             heeeeeeeccCCCeEEEEEEEcCCeEEEEEEecCCc----ccHHHHHHHHHHHHHHHHhcCC--------CC----EeeE
Confidence            45999999999999999996    499998875432    1223345778999999999998        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLAV  285 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~y  285 (447)
                      ++++..                              ++..|+||||+.+| +|.+++.   +++..++.++.||+.||+|
T Consensus        72 ~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~i~~~l~~~l~~  120 (271)
T 3dtc_A           72 RGVCLK------------------------------EPNLCLVMEFARGG-PLNRVLSGKRIPPDILVNWAVQIARGMNY  120 (271)
T ss_dssp             EEEECC------------------------------C--CEEEEECCTTE-EHHHHHTSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEec------------------------------CCceEEEEEcCCCC-CHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence            998532                              56689999999988 9999886   9999999999999999999


Q ss_pred             HHHhCC---eeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC---EEEEecCCCCCCCC
Q 013230          286 AEAAYE---FEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED---IFFLDLSQDPELFS  359 (447)
Q Consensus       286 lH~~~~---iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g---~i~~~~~~~pelf~  359 (447)
                      ||+ .|   |+||||||+|||++.....            .......+||+|||+|+......   ......|++||.+.
T Consensus       121 lH~-~~~~~i~H~dikp~Nil~~~~~~~------------~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~  187 (271)
T 3dtc_A          121 LHD-EAIVPIIHRDLKSSNILILQKVEN------------GDLSNKILKITDFGLAREWHRTTKMSAAGAYAWMAPEVIR  187 (271)
T ss_dssp             HHH-SSSSCCCCSCCSGGGEEESSCCSS------------SCCSSCCEEECCCCC-------------CCGGGSCHHHHH
T ss_pred             HHh-CCCCceeecCCchHHEEEeccccc------------ccccCcceEEccCCcccccccccccCCCCccceeCHHHhc
Confidence            999 98   9999999999999874210            00001269999999998654332   22334588999998


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      +.....+.|+|+ +|.+.++++++..|+...................+.+...++++++||.+||..|     |+.|+++
T Consensus       188 ~~~~~~~~Di~s-lG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~  266 (271)
T 3dtc_A          188 ASMFSKGSDVWS-YGVLLWELLTGEVPFRGIDGLAVAYGVAMNKLALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILD  266 (271)
T ss_dssp             HCCCSHHHHHHH-HHHHHHHHHHCCCTTTTSCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             cCCCCchhhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHhhhcCCCCCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHH
Confidence            877777789999 9999999999999997654444444444444455556778999999999999999     9999987


Q ss_pred             C
Q 013230          435 D  435 (447)
Q Consensus       435 H  435 (447)
                      |
T Consensus       267 ~  267 (271)
T 3dtc_A          267 Q  267 (271)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=1.8e-33  Score=280.09  Aligned_cols=241  Identities=16%  Similarity=0.161  Sum_probs=164.8

Q ss_pred             hhhccCCCcceE-EeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHH-HHHhccccccCCCCC
Q 013230          127 LFSKYSDPENIV-KVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVV-LSWTLNHLRRNEGDT  198 (447)
Q Consensus       127 ~~~~y~~~~~~~-~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~-il~~L~h~~~~~~~~  198 (447)
                      +.++|   ++++ .||+|+||.||+|++      ||+|++...             ....+|+. .++.++|        
T Consensus        26 ~~~~y---~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-------------~~~~~e~~~~~~~~~h--------   81 (336)
T 3fhr_A           26 VTDDY---QLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS-------------PKARQEVDHHWQASGG--------   81 (336)
T ss_dssp             GGGTE---EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS-------------HHHHHHHHHHHHHTTS--------
T ss_pred             cccee---EecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc-------------HHHHHHHHHHHHhcCC--------
Confidence            44555   8865 599999999999973      999998632             12233333 3455566        


Q ss_pred             CCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHH
Q 013230          199 LNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEA  272 (447)
Q Consensus       199 ~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~  272 (447)
                      ||    |+++++++.....                          ....+|+||||+.|| +|.+++.      +++..+
T Consensus        82 ~~----i~~~~~~~~~~~~--------------------------~~~~~~lv~e~~~gg-~L~~~l~~~~~~~l~~~~~  130 (336)
T 3fhr_A           82 PH----IVCILDVYENMHH--------------------------GKRCLLIIMECMEGG-ELFSRIQERGDQAFTEREA  130 (336)
T ss_dssp             TT----BCCEEEEEEEEET--------------------------TEEEEEEEEECCTTE-EHHHHHHTC-CCCCBHHHH
T ss_pred             CC----hHHHHHHHhhccC--------------------------CCceEEEEEeccCCC-CHHHHHHhcCCCCCCHHHH
Confidence            77    9999998754211                          134589999999988 9999875      899999


Q ss_pred             HHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---CEEEE
Q 013230          273 RSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---DIFFL  349 (447)
Q Consensus       273 ~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---g~i~~  349 (447)
                      +.++.||+.||.|||+ .||+||||||+|||++.++.                 ...+||+|||+++.....   .....
T Consensus       131 ~~i~~ql~~~l~~LH~-~~ivH~dlkp~NIll~~~~~-----------------~~~~kl~Dfg~~~~~~~~~~~~~~~t  192 (336)
T 3fhr_A          131 AEIMRDIGTAIQFLHS-HNIAHRDVKPENLLYTSKEK-----------------DAVLKLTDFGFAKETTQNALQTPCYT  192 (336)
T ss_dssp             HHHHHHHHHHHHHHHH-TTEECSCCSGGGEEESCSST-----------------TCCEEECCCTTCEEC-----------
T ss_pred             HHHHHHHHHHHHHHHh-CCeecCCCCHHHEEEEecCC-----------------CceEEEeccccceeccccccccCCCC
Confidence            9999999999999999 99999999999999987541                 115999999999876543   22344


Q ss_pred             ecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHH----HHHHHhhccCCC--CCccchHHHHHHHHHh
Q 013230          350 DLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVY----LVDMLLLKKTFD--RSSKDERDLRSLKKRL  423 (447)
Q Consensus       350 ~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~----~~~~l~~~~~~~--~~~~~s~~l~dLl~~m  423 (447)
                      ..|++||++.+.....+.|||+ +|.+.++++.|..|+........    ..........++  ....+++++++||++|
T Consensus       193 ~~y~aPE~~~~~~~~~~~Di~s-lG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  271 (336)
T 3fhr_A          193 PYYVAPEVLGPEKYDKSCDMWS-LGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLL  271 (336)
T ss_dssp             -----------CHHHHHHHHHH-HHHHHHHHHHSSCCC---------------------CCCTTTSTTCCHHHHHHHHHH
T ss_pred             cCccChhhhCCCCCCchhhHHH-HHHHHHHHHHCCCCCCCccchhhhhhHHHhhhccccccCchhhccCCHHHHHHHHHH
Confidence            5589999998766666779999 99999999999999865422111    111111111222  2346899999999999


Q ss_pred             cccc-----CHHHHHcCCCCCCC
Q 013230          424 DKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       424 L~~d-----sa~elL~HPff~~~  441 (447)
                      |..|     |++|+|+||||++.
T Consensus       272 L~~dP~~Rpt~~ell~hp~~~~~  294 (336)
T 3fhr_A          272 LKTDPTERLTITQFMNHPWINQS  294 (336)
T ss_dssp             SCSSGGGSCCHHHHHHSHHHHTG
T ss_pred             CCCChhHCcCHHHHhcCcccccc
Confidence            9999     99999999999864

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=4.4e-34  Score=288.11  Aligned_cols=235  Identities=20%  Similarity=0.226  Sum_probs=187.5

Q ss_pred             CcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          134 PENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      |+++++||+|+||.||+|+           .||+|++...       ........+.+|+.+++.++|        ||  
T Consensus        73 ~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~-------~~~~~~~~~~~E~~~l~~l~h--------pn--  135 (367)
T 3l9p_A           73 ITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV-------CSEQDELDFLMEALIISKFNH--------QN--  135 (367)
T ss_dssp             EEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSS-------CCHHHHHHHHHHHHHHHHCCC--------TT--
T ss_pred             eEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccc-------cChhhHHHHHHHHHHHHhCCC--------CC--
Confidence            4999999999999999998           3999988633       122334568899999999988        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----------CCHHH
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----------LNINE  271 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----------l~~~~  271 (447)
                        |+++++++.                              .....|+|||||.|| +|.+++.           +++..
T Consensus       136 --Iv~~~~~~~------------------------------~~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~~~~  182 (367)
T 3l9p_A          136 --IVRCIGVSL------------------------------QSLPRFILLELMAGG-DLKSFLRETRPRPSQPSSLAMLD  182 (367)
T ss_dssp             --BCCEEEEEC------------------------------SSSSCEEEEECCTTE-EHHHHHHHHSCCSSSCCCCCHHH
T ss_pred             --CCeEEEEEe------------------------------cCCCCEEEEEeCCCC-CHHHHHHhhccccCccccccHHH
Confidence              999999853                              245689999999988 9999874           78899


Q ss_pred             HHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCC------CC
Q 013230          272 ARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG------ED  345 (447)
Q Consensus       272 ~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~------~g  345 (447)
                      ++.++.||+.||+|||+ .||+||||||+|||++.++.                 +..+||+|||+|+....      .+
T Consensus       183 ~~~i~~qi~~aL~~LH~-~~ivHrDlkp~NIll~~~~~-----------------~~~~kL~DFG~a~~~~~~~~~~~~~  244 (367)
T 3l9p_A          183 LLHVARDIACGCQYLEE-NHFIHRDIAARNCLLTCPGP-----------------GRVAKIGDFGMARDIYRAGYYRKGG  244 (367)
T ss_dssp             HHHHHHHHHHHHHHHHH-TTCCCSCCCGGGEEESCSST-----------------TCCEEECCCHHHHHHHHHSSCTTCC
T ss_pred             HHHHHHHHHHHHHHHHh-CCeeCCCCChhhEEEecCCC-----------------CceEEECCCccccccccccccccCC
Confidence            99999999999999999 99999999999999996641                 12599999999975311      11


Q ss_pred             E-EEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHh
Q 013230          346 I-FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRL  423 (447)
Q Consensus       346 ~-i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~m  423 (447)
                      + .....|++||++.+...+.+.|||+ +|++.+++++ +..|+...........+. .....+.+...+.++.+||.+|
T Consensus       245 ~~~~t~~y~aPE~~~~~~~~~~~Dvws-lG~il~ellt~g~~pf~~~~~~~~~~~i~-~~~~~~~~~~~~~~l~~li~~~  322 (367)
T 3l9p_A          245 CAMLPVKWMPPEAFMEGIFTSKTDTWS-FGVLLWEIFSLGYMPYPSKSNQEVLEFVT-SGGRMDPPKNCPGPVYRIMTQC  322 (367)
T ss_dssp             GGGSCGGGCCHHHHHHCCCCHHHHHHH-HHHHHHHHHTTSCCSSTTCCHHHHHHHHH-TTCCCCCCTTCCHHHHHHHHHH
T ss_pred             CcCCcccEECHHHhcCCCCCcHHHHHH-HHHHHHHHHhCCCCCCCCCCHHHHHHHHH-cCCCCCCCccCCHHHHHHHHHH
Confidence            1 1223489999998777778889999 9999999997 888887654444333333 2334445567899999999999


Q ss_pred             cccc-----CHHHHHcCCCC
Q 013230          424 DKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       424 L~~d-----sa~elL~HPff  438 (447)
                      |..|     |++|+++|.++
T Consensus       323 l~~dP~~Rps~~eil~~l~~  342 (367)
T 3l9p_A          323 WQHQPEDRPNFAIILERIEY  342 (367)
T ss_dssp             TCSSGGGSCCHHHHHHHHHH
T ss_pred             cCCCHhHCcCHHHHHHHHHH
Confidence            9999     99999988754

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=2.9e-33  Score=274.75  Aligned_cols=238  Identities=16%  Similarity=0.194  Sum_probs=183.6

Q ss_pred             CcceEEeccccceEEEEece-----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          134 PENIVKVGEGTFGEAFLAGN-----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~-----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      |++++.||+|+||.||+|++     ||+|++.....      .....+.+.+|+.+++.++|          .|++|+++
T Consensus        30 y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~------~~~~~~~~~~E~~~l~~l~~----------~~~~iv~~   93 (313)
T 3cek_A           30 YSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA------DNQTLDSYRNEIAYLNKLQQ----------HSDKIIRL   93 (313)
T ss_dssp             EEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSC------CHHHHHHHHHHHHHHHHHGG----------GCTTBCCE
T ss_pred             EEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccc------cccchHHHHHHHHHHHhccc----------cCCceEEE
Confidence            59999999999999999963     99999875432      23345778999999999985          12449999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~  284 (447)
                      ++++..                              ++.+|+||| +.+| +|.+++.    +++..++.++.||+.||.
T Consensus        94 ~~~~~~------------------------------~~~~~lv~e-~~~~-~L~~~l~~~~~~~~~~~~~i~~qi~~aL~  141 (313)
T 3cek_A           94 YDYEIT------------------------------DQYIYMVME-CGNI-DLNSWLKKKKSIDPWERKSYWKNMLEAVH  141 (313)
T ss_dssp             EEEEEC------------------------------SSEEEEEEC-CCSE-EHHHHHHHCSSCCHHHHHHHHHHHHHHHH
T ss_pred             EEEeec------------------------------CCEEEEEEe-cCCC-cHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            998543                              566999999 4456 9999886    899999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-------EEEEecCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-------IFFLDLSQDPEL  357 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-------~i~~~~~~~pel  357 (447)
                      |||+ .||+||||||+|||++. +                    .+||+|||+++......       ......|++||.
T Consensus       142 ~LH~-~~ivH~dlkp~NIl~~~-~--------------------~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~  199 (313)
T 3cek_A          142 TIHQ-HGIVHSDLKPANFLIVD-G--------------------MLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEA  199 (313)
T ss_dssp             HHHH-TTCCCCCCCGGGEEEET-T--------------------EEEECCCSSSCC--------------CCGGGCCHHH
T ss_pred             HHHH-CCceecCCCcccEEEEC-C--------------------eEEEeeccccccccCccccccccCCCCCCCcCCHHH
Confidence            9999 99999999999999965 3                    79999999998754331       123445899999


Q ss_pred             CCC-----------CCCCchHHHHHhhccCCcccccCCCCCChhH-HHHHHHHHHhhccCCCCCccchHHHHHHHHHhcc
Q 013230          358 FSG-----------PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVL-WLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDK  425 (447)
Q Consensus       358 f~g-----------~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~-~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~  425 (447)
                      +.+           .....+.|||+ +|.+.++++.|..|+.... ....+...+........+...+.++++||++||.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~Di~s-lG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  278 (313)
T 3cek_A          200 IKDMSSSRENGKSKSKISPKSDVWS-LGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLK  278 (313)
T ss_dssp             HTTCC----------CCCHHHHHHH-HHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTC
T ss_pred             HhhcccccccccccccCCchHHHHH-HHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccccCCcccchHHHHHHHHHHcc
Confidence            876           24555679999 9999999999999986531 1122223332223334445668899999999999


Q ss_pred             cc-----CHHHHHcCCCCCCCC
Q 013230          426 YN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       426 ~d-----sa~elL~HPff~~~~  442 (447)
                      .|     |++|+|+||||+...
T Consensus       279 ~dp~~Rps~~ell~h~~~~~~~  300 (313)
T 3cek_A          279 RDPKQRISIPELLAHPYVQIQT  300 (313)
T ss_dssp             SSTTTSCCHHHHHTSHHHHCC-
T ss_pred             CCcccCcCHHHHhcCccccCCC
Confidence            99     999999999998653

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.5e-33  Score=281.94  Aligned_cols=229  Identities=21%  Similarity=0.251  Sum_probs=186.2

Q ss_pred             CcceEEeccccceEEEEec-------------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCC
Q 013230          134 PENIVKVGEGTFGEAFLAG-------------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTL  199 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-------------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~  199 (447)
                      |++.++||+|+||.||+|+             .||+|++...       ........+.+|+.+++.+ +|        |
T Consensus        71 y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~-------~~~~~~~~~~~E~~~l~~l~~h--------p  135 (382)
T 3tt0_A           71 LVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSD-------ATEKDLSDLISEMEMMKMIGKH--------K  135 (382)
T ss_dssp             EEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTT-------CCHHHHHHHHHHHHHHHHHCCC--------T
T ss_pred             eEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccc-------cCHHHHHHHHHHHHHHHHhcCC--------c
Confidence            3999999999999999996             3899988643       2233446789999999999 77        7


Q ss_pred             CcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------------
Q 013230          200 NACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------------  266 (447)
Q Consensus       200 n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------------  266 (447)
                      |    |+++++++.                              .++.+|+||||+.+| +|.+++.             
T Consensus       136 n----Iv~~~~~~~------------------------------~~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~  180 (382)
T 3tt0_A          136 N----IINLLGACT------------------------------QDGPLYVIVEYASKG-NLREYLQARRPPGLEYSYNP  180 (382)
T ss_dssp             T----BCCEEEEEC------------------------------SSSSCEEEEECCTTC-BHHHHHHHTCCSSSSSCCCC
T ss_pred             h----hhhheeeec------------------------------cCCceEEEEEecCCC-cHHHHHHHhccccccccccc
Confidence            7    999999853                              256699999999988 9999873             


Q ss_pred             -------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeecccee
Q 013230          267 -------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSR  339 (447)
Q Consensus       267 -------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~  339 (447)
                             +++..++.++.||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+|+
T Consensus       181 ~~~~~~~l~~~~~~~i~~qi~~aL~~LH~-~~ivH~Dlkp~NIll~~~~--------------------~~kL~DFG~a~  239 (382)
T 3tt0_A          181 SHNPEEQLSSKDLVSCAYQVARGMEYLAS-KKCIHRDLAARNVLVTEDN--------------------VMKIADFGLAR  239 (382)
T ss_dssp             CSSCCCCCCHHHHHHHHHHHHHHHHHHHH-TTCCCSCCCGGGEEECTTC--------------------CEEECSCSCCC
T ss_pred             ccccccccCHHHHHHHHHHHHHHHHHHHh-CCEecCCCCcceEEEcCCC--------------------cEEEcccCccc
Confidence                   7899999999999999999999 9999999999999999887                    79999999998


Q ss_pred             ecCCC-------CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCcc
Q 013230          340 INTGE-------DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSK  411 (447)
Q Consensus       340 ~~~~~-------g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~  411 (447)
                      .....       .......|++||.+.+...+.+.|||+ +|.+.+++++ +..|+......... ..+........+..
T Consensus       240 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Diws-lG~il~ellt~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~  317 (382)
T 3tt0_A          240 DIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWS-FGVLLWEIFTLGGSPYPGVPVEELF-KLLKEGHRMDKPSN  317 (382)
T ss_dssp             CSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHH-HHHHHHHHHTTSCCSSTTCCHHHHH-HHHHTTCCCCCCSS
T ss_pred             ccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHH-HHHHHHHHHhCCCCCCCCCCHHHHH-HHHHcCCCCCCCcc
Confidence            65432       111223488999998877778889999 9999999998 88888665443333 33333334555677


Q ss_pred             chHHHHHHHHHhcccc-----CHHHHHcC
Q 013230          412 DERDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       412 ~s~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      .++++++||++||..|     |++|+++|
T Consensus       318 ~~~~l~~li~~~l~~dP~~Rps~~ell~~  346 (382)
T 3tt0_A          318 CTNELYMMMRDCWHAVPSQRPTFKQLVED  346 (382)
T ss_dssp             CCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            8999999999999999     99998865

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=3.8e-33  Score=271.48  Aligned_cols=230  Identities=16%  Similarity=0.198  Sum_probs=181.1

Q ss_pred             CcceEEeccccceEEEEec----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccc
Q 013230          134 PENIVKVGEGTFGEAFLAG----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACT  203 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~  203 (447)
                      |+++++||+|+||.||+|+          .||+|++...        .....+.+.+|+.+++.++|        ||   
T Consensus        12 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~--------~~~~~~~~~~E~~~l~~l~h--------~~---   72 (295)
T 3ugc_A           12 LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS--------TEEHLRDFEREIEILKSLQH--------DN---   72 (295)
T ss_dssp             EEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCC--------CHHHHHHHHHHHHHHHTCCC--------TT---
T ss_pred             hhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccC--------CHHHHHHHHHHHHHHHhCCC--------CC---
Confidence            4999999999999999996          2999988633        22334678899999999998        88   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHH
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQ  278 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Q  278 (447)
                       |+++++++...+                            ...+|+||||+.+| +|.+++.     +++..+..++.|
T Consensus        73 -iv~~~~~~~~~~----------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~q  122 (295)
T 3ugc_A           73 -IVKYKGVCYSAG----------------------------RRNLKLIMEYLPYG-SLRDYLQKHKERIDHIKLLQYTSQ  122 (295)
T ss_dssp             -BCCEEEEECHHH----------------------------HTSCEEEEECCTTC-BHHHHHHHCGGGCCHHHHHHHHHH
T ss_pred             -EeeEEEEEecCC----------------------------CCceEEEEEeCCCC-CHHHHHHhcccccCHHHHHHHHHH
Confidence             999999854311                            24589999999988 9999885     899999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE--------EEe
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF--------FLD  350 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i--------~~~  350 (447)
                      |+.||+|||+ .||+||||||+|||++.++                    .+||+|||+|+........        ...
T Consensus       123 i~~~l~~lH~-~~ivH~Dikp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~  181 (295)
T 3ugc_A          123 ICKGMEYLGT-KRYIHRDLATRNILVENEN--------------------RVKIGDFGLTKVLPQDKEFFKVKEPGESPI  181 (295)
T ss_dssp             HHHHHHHHHH-TTCCCSCCSGGGEEEEETT--------------------EEEECCCCSCC-------------CTTCGG
T ss_pred             HHHHHHHHhc-CCcccCCCCHhhEEEcCCC--------------------eEEEccCcccccccCCcceeeeccCCCCcc
Confidence            9999999999 9999999999999999987                    7999999999876543211        111


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHH---------------HHHHHHHhhccCCCCCccchHH
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWL---------------VYLVDMLLLKKTFDRSSKDERD  415 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~---------------~~~~~~l~~~~~~~~~~~~s~~  415 (447)
                      .|++||.+.+...+.+.|||+ +|.+.++++++..|+......               ......+......+.+...+++
T Consensus       182 ~y~aPE~~~~~~~~~~~Di~s-lG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (295)
T 3ugc_A          182 FWYAPESLTESKFSVASDVWS-FGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDE  260 (295)
T ss_dssp             GGCCHHHHHHCCCCHHHHHHH-HHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHH
T ss_pred             ceeCcHHhcCCCCChHHHHHH-HHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHHHhccCcCCCCcCcCHH
Confidence            278999998877777889999 999999999988776543211               1122233333455666788999


Q ss_pred             HHHHHHHhcccc-----CHHHHHc
Q 013230          416 LRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       416 l~dLl~~mL~~d-----sa~elL~  434 (447)
                      +.+||++||..|     |+.|+++
T Consensus       261 l~~li~~~l~~dp~~Rps~~el~~  284 (295)
T 3ugc_A          261 IYMIMTECWNNNVNQRPSFRDLAL  284 (295)
T ss_dssp             HHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHcCCChhhCCCHHHHHH
Confidence            999999999999     9999875

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=1.3e-32  Score=267.99  Aligned_cols=231  Identities=20%  Similarity=0.258  Sum_probs=182.9

Q ss_pred             CcceEEeccccceEEEEec----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccc
Q 013230          134 PENIVKVGEGTFGEAFLAG----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACT  203 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~  203 (447)
                      |+++++||+|+||.||+|+          .||+|++....       .....+.+.+|+.+++.++|        ||   
T Consensus        23 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------~~---   84 (302)
T 4e5w_A           23 LKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES-------GGNHIADLKKEIEILRNLYH--------EN---   84 (302)
T ss_dssp             EEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC------------CCHHHHHHHHHHHHTCCC--------TT---
T ss_pred             hhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccc-------cchhHHHHHHHHHHHHhCCC--------CC---
Confidence            4999999999999999996          29999987442       22344678999999999988        88   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHH
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQ  278 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Q  278 (447)
                       |+++++++...+                            .+.+|+||||+.+| +|.+++.     +++..++.++.|
T Consensus        85 -i~~~~~~~~~~~----------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~  134 (302)
T 4e5w_A           85 -IVKYKGICTEDG----------------------------GNGIKLIMEFLPSG-SLKEYLPKNKNKINLKQQLKYAVQ  134 (302)
T ss_dssp             -BCCEEEEEEC-------------------------------CCEEEEEECCTTC-BHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             -eeeeeeEEecCC----------------------------CceEEEEEEeCCCC-cHHHHHHhccccCCHHHHHHHHHH
Confidence             999999965422                            35689999999988 9999984     899999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEEE--------Ee
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFF--------LD  350 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i~--------~~  350 (447)
                      |+.||+|||+ .||+||||||+|||++.++                    .+||+|||+|+.........        ..
T Consensus       135 i~~~l~~lH~-~~i~H~dikp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~  193 (302)
T 4e5w_A          135 ICKGMDYLGS-RQYVHRDLAARNVLVESEH--------------------QVKIGDFGLTKAIETDKEYYTVKDDRDSPV  193 (302)
T ss_dssp             HHHHHHHHHH-TTEECSCCSGGGEEEEETT--------------------EEEECCCTTCEECCTTCCEEECCCCTTCCG
T ss_pred             HHHHHHHhhc-CCcccCCCchheEEEcCCC--------------------CEEECcccccccccCCCcceeccCCCCCCc
Confidence            9999999999 9999999999999999987                    79999999998765543211        12


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChh--------------HHHHHHHHHHhhccCCCCCccchHHH
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV--------------LWLVYLVDMLLLKKTFDRSSKDERDL  416 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~--------------~~~~~~~~~l~~~~~~~~~~~~s~~l  416 (447)
                      .|++||.+.+.....+.|+|+ +|.+.++++++..|+...              .........+......+.+..+++++
T Consensus       194 ~y~aPE~~~~~~~~~~~Di~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  272 (302)
T 4e5w_A          194 FWYAPECLMQSKFYIASDVWS-FGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEV  272 (302)
T ss_dssp             GGCCHHHHHHCEEEHHHHHHH-HHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHHTTCCCCCCTTCCHHH
T ss_pred             cccCCeeecCCCCCcchhHHH-HHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHhccCCCCCCCCCCHHH
Confidence            278899887766667779999 999999999987664322              11222233333334555667789999


Q ss_pred             HHHHHHhcccc-----CHHHHHc
Q 013230          417 RSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       417 ~dLl~~mL~~d-----sa~elL~  434 (447)
                      .+||++||..|     |+.|+++
T Consensus       273 ~~li~~~l~~dp~~Rps~~~ll~  295 (302)
T 4e5w_A          273 YQLMRKCWEFQPSNRTSFQNLIE  295 (302)
T ss_dssp             HHHHHHTTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHH
Confidence            99999999999     9999875

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.9e-33  Score=275.77  Aligned_cols=237  Identities=20%  Similarity=0.246  Sum_probs=179.4

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc----cccccCCCCCCCccc
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL----NHLRRNEGDTLNACT  203 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L----~h~~~~~~~~~n~~~  203 (447)
                      |++.+.||+|+||.||+|++      ||+|++........  ........+.+|+.+++++    +|        +|   
T Consensus        33 y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~--~~~~~~~~~~~e~~~l~~l~~~~~h--------~~---   99 (312)
T 2iwi_A           33 YRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGW--SPLSDSVTCPLEVALLWKVGAGGGH--------PG---   99 (312)
T ss_dssp             CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC----------CCCCHHHHHHHHHHSSCCC--------SS---
T ss_pred             eEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEeccccccc--ccchhhHHHHHHHHHHHhhcccCCC--------CC---
Confidence            49999999999999999963      99999875432100  0001223456799999998    55        66   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEE-ecCccchhhhhc----CCHHHHHHHHHH
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVL-QHGGKDLESFVL----LNINEARSLLVQ  278 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~-~~gG~~L~~~i~----l~~~~~~~i~~Q  278 (447)
                       |+++++++.                              ..+..|+|||+ +.+| +|.+++.    +++..++.++.|
T Consensus       100 -i~~~~~~~~------------------------------~~~~~~~v~e~~~~~~-~L~~~l~~~~~~~~~~~~~~~~q  147 (312)
T 2iwi_A          100 -VIRLLDWFE------------------------------TQEGFMLVLERPLPAQ-DLFDYITEKGPLGEGPSRCFFGQ  147 (312)
T ss_dssp             -BCCEEEEC-----------------------------------CEEEEECCSSEE-EHHHHHHHHCSCCHHHHHHHHHH
T ss_pred             -eeeEEEEEe------------------------------cCCeEEEEEEecCCCC-CHHHHHHhcCCCCHHHHHHHHHH
Confidence             999999843                              25668999999 5655 9999886    899999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEe-cCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE---EEEecCCC
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLS-RNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI---FFLDLSQD  354 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~-~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~---i~~~~~~~  354 (447)
                      |+.||+|||+ .||+||||||+|||++ .++                    .+||+|||+++.......   .....|++
T Consensus       148 i~~~l~~lH~-~~i~H~dlkp~Nil~~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~y~a  206 (312)
T 2iwi_A          148 VVAAIQHCHS-RGVVHRDIKDENILIDLRRG--------------------CAKLIDFGSGALLHDEPYTDFDGTRVYSP  206 (312)
T ss_dssp             HHHHHHHHHH-HTEECCCCSGGGEEEETTTT--------------------EEEECCCSSCEECCSSCBCCCCSCTTTSC
T ss_pred             HHHHHHHHHH-CCeeecCCChhhEEEeCCCC--------------------eEEEEEcchhhhcccCcccccCCcccccC
Confidence            9999999999 9999999999999999 555                    799999999987654321   22334888


Q ss_pred             CCCCCCCCCCc-hHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C
Q 013230          355 PELFSGPKGDK-QFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S  428 (447)
Q Consensus       355 pelf~g~~~~~-~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s  428 (447)
                      ||++.+..... +.|||+ +|.+.++++.|..|+....      ...  ......+..++.++++||.+||..|     |
T Consensus       207 PE~~~~~~~~~~~~Di~s-lG~il~~l~~g~~pf~~~~------~~~--~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps  277 (312)
T 2iwi_A          207 PEWISRHQYHALPATVWS-LGILLYDMVCGDIPFERDQ------EIL--EAELHFPAHVSPDCCALIRRCLAPKPSSRPS  277 (312)
T ss_dssp             HHHHHHSCBCHHHHHHHH-HHHHHHHHHHSSCSCCSHH------HHH--HTCCCCCTTSCHHHHHHHHHHTCSSTTTSCC
T ss_pred             ceeeecCCCCCccchHHH-HHHHHHHHHHCCCCCCChH------HHh--hhccCCcccCCHHHHHHHHHHccCChhhCcC
Confidence            98886655444 569999 9999999999999987642      112  1233344668999999999999999     9


Q ss_pred             HHHHHcCCCCCCCCCCC
Q 013230          429 AKEAIFDPFFSDLIVDR  445 (447)
Q Consensus       429 a~elL~HPff~~~~~~~  445 (447)
                      ++|+++||||+....+.
T Consensus       278 ~~e~l~~~~~~~~~~~~  294 (312)
T 2iwi_A          278 LEEILLDPWMQTPAEDV  294 (312)
T ss_dssp             HHHHHHSTTTCC-----
T ss_pred             HHHHhcChhhcCchhcc
Confidence            99999999999875543

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=3e-33  Score=270.34  Aligned_cols=227  Identities=17%  Similarity=0.210  Sum_probs=182.0

Q ss_pred             CcceEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          134 PENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      |++++.||+|+||.||+|+     .||+|++.....         ..+.+.+|+.+++.++|        +|    |+++
T Consensus        26 y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~---------~~~~~~~E~~~l~~l~h--------~~----i~~~   84 (283)
T 3gen_A           26 LTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM---------SEDEFIEEAKVMMNLSH--------EK----LVQL   84 (283)
T ss_dssp             EEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB---------CHHHHHHHHHHHHTCCC--------TT----BCCE
T ss_pred             HHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC---------CHHHHHHHHHHHhcCCC--------CC----EeeE
Confidence            4999999999999999997     499999874321         23568999999999998        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~gL  283 (447)
                      ++++.                              ..+.+|+||||+.+| +|.+++.     +++..++.++.||+.||
T Consensus        85 ~~~~~------------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~i~~qi~~~l  133 (283)
T 3gen_A           85 YGVCT------------------------------KQRPIFIITEYMANG-CLLNYLREMRHRFQTQQLLEMCKDVCEAM  133 (283)
T ss_dssp             EEEEC------------------------------SSSSEEEEECCCTTC-BHHHHHHCGGGCCCHHHHHHHHHHHHHHH
T ss_pred             EEEEe------------------------------cCCCeEEEEeccCCC-cHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence            99843                              256799999999988 9999875     89999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------CEEEEecCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------DIFFLDLSQDPEL  357 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g~i~~~~~~~pel  357 (447)
                      +|||+ .||+||||||+|||++.++                    .+||+|||+++.....      +......|++||.
T Consensus       134 ~~lH~-~~i~H~dikp~Nili~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~  192 (283)
T 3gen_A          134 EYLES-KQFLHRDLAARNCLVNDQG--------------------VVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEV  192 (283)
T ss_dssp             HHHHH-TTCCCSSCSGGGEEECTTS--------------------CEEECSTTGGGGBCCHHHHSTTSTTSCGGGCCHHH
T ss_pred             HHHHH-CCccCCCCccceEEEcCCC--------------------CEEEccccccccccccccccccCCccCcccCCHHH
Confidence            99999 9999999999999999887                    7999999999865332      1112234789999


Q ss_pred             CCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHH
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKE  431 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~e  431 (447)
                      +.+.....+.|+|+ +|.+.+++++ +..|+............. .......+...++++.+||.+||..|     |++|
T Consensus       193 ~~~~~~~~~~Dv~s-lG~~l~~l~t~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~  270 (283)
T 3gen_A          193 LMYSKFSSKSDIWA-FGVLMWEIYSLGKMPYERFTNSETAEHIA-QGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKI  270 (283)
T ss_dssp             HHHCCCSHHHHHHH-HHHHHHHHHTTTCCTTTTSCHHHHHHHHH-TTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHH
T ss_pred             hccCCCCchhhHHH-HHHHHHHHHhCCCCCccccChhHHHHHHh-cccCCCCCCcCCHHHHHHHHHHccCChhHCcCHHH
Confidence            98777777789999 9999999998 888886544333333332 22334445667899999999999999     9999


Q ss_pred             HHcC
Q 013230          432 AIFD  435 (447)
Q Consensus       432 lL~H  435 (447)
                      +++|
T Consensus       271 ll~~  274 (283)
T 3gen_A          271 LLSN  274 (283)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9876

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=5e-33  Score=272.15  Aligned_cols=230  Identities=20%  Similarity=0.187  Sum_probs=184.8

Q ss_pred             CcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCc
Q 013230          134 PENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNA  201 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~  201 (447)
                      |++.+.||+|+||.||+|+           .||+|++....       .....+.+.+|+.+++++ +|        || 
T Consensus        25 y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~~~E~~~l~~l~~h--------~~-   88 (313)
T 1t46_A           25 LSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA-------HLTEREALMSELKVLSYLGNH--------MN-   88 (313)
T ss_dssp             EEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC-------CHHHHHHHHHHHHHHHHHCCC--------TT-
T ss_pred             hhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcch-------hHHHHHHHHHHHHHHhhcccC--------CC-
Confidence            4999999999999999995           39999887432       222346789999999999 77        77 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------------
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------------  266 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------------  266 (447)
                         |+++++++..                              .+..|+||||+.+| +|.+++.               
T Consensus        89 ---i~~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~  134 (313)
T 1t46_A           89 ---IVNLLGACTI------------------------------GGPTLVITEYCCYG-DLLNFLRRKRDSFICSKTSPAI  134 (313)
T ss_dssp             ---BCCEEEEECS------------------------------SSSCEEEEECCTTE-EHHHHHHHTTTTC---------
T ss_pred             ---eeeEEEEEec------------------------------CCCcEEEEecCCCC-CHHHHHHhcccccccccccccc
Confidence               9999998532                              46689999999988 9998874               


Q ss_pred             -------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeecccee
Q 013230          267 -------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSR  339 (447)
Q Consensus       267 -------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~  339 (447)
                             +++..++.++.||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+++
T Consensus       135 ~~~~~~~~~~~~~~~~~~qi~~~l~~lH~-~~i~H~dlkp~Nil~~~~~--------------------~~kl~Dfg~~~  193 (313)
T 1t46_A          135 MEDDELALDLEDLLSFSYQVAKGMAFLAS-KNCIHRDLAARNILLTHGR--------------------ITKICDFGLAR  193 (313)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHHHHH-TTCCCSCCSGGGEEEETTT--------------------EEEECCCGGGS
T ss_pred             cccccccCCHHHHHHHHHHHHHHHHHHHH-CCeecCCCccceEEEcCCC--------------------CEEEccccccc
Confidence                   6889999999999999999999 9999999999999999887                    79999999998


Q ss_pred             ecCCCC-------EEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCcc
Q 013230          340 INTGED-------IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSK  411 (447)
Q Consensus       340 ~~~~~g-------~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~  411 (447)
                      ......       ......|++||.+.+...+.+.|||+ +|.+.+++++ +..|+............+........+..
T Consensus       194 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s-lG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  272 (313)
T 1t46_A          194 DIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWS-YGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEH  272 (313)
T ss_dssp             CTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHH-HHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCCCCCTT
T ss_pred             cccccccceeccCCCCcceeeChHHhcCCCCChHHHHHH-HHHHHHHHHhCCCCCCCcccchhHHHHHhccCCCCCCccc
Confidence            764431       12233489999988777777889999 9999999998 88887654322223333332333444567


Q ss_pred             chHHHHHHHHHhcccc-----CHHHHHcC
Q 013230          412 DERDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       412 ~s~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      .++++++||.+||..|     |+.|++++
T Consensus       273 ~~~~l~~li~~~l~~dp~~Rps~~ell~~  301 (313)
T 1t46_A          273 APAEMYDIMKTCWDADPLKRPTFKQIVQL  301 (313)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCchhCcCHHHHHHH
Confidence            8999999999999999     99998864

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=4.2e-33  Score=269.43  Aligned_cols=228  Identities=23%  Similarity=0.210  Sum_probs=174.7

Q ss_pred             CcceEEeccccceEEEEece---------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          134 PENIVKVGEGTFGEAFLAGN---------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~---------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      |++.+.||+|+||.||+|++         ||+|++...       ......+.+.+|+.+++.++|        ||    
T Consensus        17 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~-------~~~~~~~~~~~e~~~l~~l~h--------~~----   77 (281)
T 1mp8_A           17 IELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNC-------TSDSVREKFLQEALTMRQFDH--------PH----   77 (281)
T ss_dssp             EEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTT-------TSHHHHHHHHHHHHHHHTCCC--------TT----
T ss_pred             eEEEeEeeecCCeeEEEEEEecCCCCceEEEEEecccc-------CCHHHHHHHHHHHHHHHhCCC--------Cc----
Confidence            39999999999999999973         788876532       223345678999999999988        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQV  279 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qi  279 (447)
                      |+++++++.                               ++..|+||||+.+| +|.+++.     +++..++.++.||
T Consensus        78 iv~~~~~~~-------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~qi  125 (281)
T 1mp8_A           78 IVKLIGVIT-------------------------------ENPVWIIMELCTLG-ELRSFLQVRKYSLDLASLILYAYQL  125 (281)
T ss_dssp             BCCEEEEEC-------------------------------SSSCEEEEECCTTE-EHHHHHHHTTTTSCHHHHHHHHHHH
T ss_pred             cceEEEEEc-------------------------------cCccEEEEecCCCC-CHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            999999841                               35689999999988 9999876     8999999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE------EEEecCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI------FFLDLSQ  353 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~------i~~~~~~  353 (447)
                      +.||+|||+ .||+||||||+|||++.++                    .+||+|||+|+.......      .....|+
T Consensus       126 ~~~l~~lH~-~~i~H~dlkp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~  184 (281)
T 1mp8_A          126 STALAYLES-KRFVHRDIAARNVLVSSND--------------------CVKLGDFGLSRYMEDSTYYKASKGKLPIKWM  184 (281)
T ss_dssp             HHHHHHHHH-TTCCCSCCSGGGEEEEETT--------------------EEEECC-------------------CCGGGC
T ss_pred             HHHHHHHHh-CCeecccccHHHEEECCCC--------------------CEEECccccccccCcccccccccCCCccccc
Confidence            999999999 9999999999999999887                    799999999987644321      1122488


Q ss_pred             CCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----
Q 013230          354 DPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----  427 (447)
Q Consensus       354 ~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----  427 (447)
                      +||.+.+...+.+.|+|+ +|.+.++++. +..|+...........+ ......+.+...++++.+||.+||..|     
T Consensus       185 aPE~~~~~~~~~~~Di~s-lG~~l~ell~~g~~pf~~~~~~~~~~~i-~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp  262 (281)
T 1mp8_A          185 APESINFRRFTSASDVWM-FGVCMWEILMHGVKPFQGVKNNDVIGRI-ENGERLPMPPNCPPTLYSLMTKCWAYDPSRRP  262 (281)
T ss_dssp             CHHHHHHCCCSHHHHHHH-HHHHHHHHHTTSCCTTTTCCGGGHHHHH-HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             ChhhcccCCCCCccCchH-HHHHHHHHHhcCCCCCCcCCHHHHHHHH-HcCCCCCCCCCCCHHHHHHHHHHccCChhhCc
Confidence            999998777777889999 9999999986 77887654322222222 223344556678999999999999999     


Q ss_pred             CHHHHHcC
Q 013230          428 SAKEAIFD  435 (447)
Q Consensus       428 sa~elL~H  435 (447)
                      |+.|++++
T Consensus       263 s~~~l~~~  270 (281)
T 1mp8_A          263 RFTELKAQ  270 (281)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            99998764

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=4.1e-33  Score=266.61  Aligned_cols=232  Identities=13%  Similarity=0.115  Sum_probs=190.1

Q ss_pred             CcceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeee
Q 013230          134 PENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMF  209 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~  209 (447)
                      |++.+.||+|+||.||+|+    .+|+|++....      ......+.+.+|+.+++.++|        ||    |++++
T Consensus        12 y~~~~~lg~G~~g~V~~~~~~~~~~avK~~~~~~------~~~~~~~~~~~E~~~l~~l~h--------~~----iv~~~   73 (271)
T 3kmu_A           12 LNFLTKLNENHSGELWKGRWQGNDIVVKVLKVRD------WSTRKSRDFNEECPRLRIFSH--------PN----VLPVL   73 (271)
T ss_dssp             CEEEEEEEEETTEEEEEEEETTEEEEEEEECCTT------CCHHHHHHHHHHGGGGCCCSC--------TT----EECEE
T ss_pred             hHHHHHhcCCCcceEEEEEECCeeEEEEEecccc------cCHHHHHHHHHHHHHHHhcCC--------Cc----hhheE
Confidence            4999999999999999997    49999987543      222344678999999999988        88    99999


Q ss_pred             eEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHHH
Q 013230          210 EIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAGL  283 (447)
Q Consensus       210 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~gL  283 (447)
                      +++...                            ..+..|+||||+.+| +|.+++.      +++..++.++.||+.||
T Consensus        74 ~~~~~~----------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l  124 (271)
T 3kmu_A           74 GACQSP----------------------------PAPHPTLITHWMPYG-SLYNVLHEGTNFVVDQSQAVKFALDMARGM  124 (271)
T ss_dssp             EEECTT----------------------------TSSSCEEEEECCTTC-BHHHHHHSCSSCCCCHHHHHHHHHHHHHHH
T ss_pred             EEEccC----------------------------CCCCeEeeecccCCC-cHHHHHhhcccCCCCHHHHHHHHHHHHHHH
Confidence            985321                            125689999999988 9999986      79999999999999999


Q ss_pred             HHHHHhCC--eeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEEEEecCCCCCCCCCC
Q 013230          284 AVAEAAYE--FEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGP  361 (447)
Q Consensus       284 ~ylH~~~~--iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i~~~~~~~pelf~g~  361 (447)
                      +|||+ .|  |+||||||+|||++.++                    .++|+|||++......+......|++||.+.+.
T Consensus       125 ~~lH~-~~~~i~H~dikp~Nil~~~~~--------------------~~~l~~~~~~~~~~~~~~~~t~~y~aPE~~~~~  183 (271)
T 3kmu_A          125 AFLHT-LEPLIPRHALNSRSVMIDEDM--------------------TARISMADVKFSFQSPGRMYAPAWVAPEALQKK  183 (271)
T ss_dssp             HHHTT-SSSCCTTCCCSGGGEEECTTS--------------------CEEEEGGGSCCTTSCTTCBSCGGGSCHHHHHSC
T ss_pred             HHHhc-CCCceecCCCccceEEEcCCc--------------------ceeEEeccceeeecccCccCCccccChhhhccC
Confidence            99999 99  99999999999999887                    689999988877666655556679999999875


Q ss_pred             CCCc---hHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHH
Q 013230          362 KGDK---QFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAI  433 (447)
Q Consensus       362 ~~~~---~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL  433 (447)
                      ....   +.|||+ +|.+.++++++..|+...................+.+...++++.+||.+||..|     |++|++
T Consensus       184 ~~~~~~~~~Di~s-lG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il  262 (271)
T 3kmu_A          184 PEDTNRRSADMWS-FAVLLWELVTREVPFADLSNMEIGMKVALEGLRPTIPPGISPHVSKLMKICMNEDPAKRPKFDMIV  262 (271)
T ss_dssp             GGGSCHHHHHHHH-HHHHHHHHHHCSCTTTTSCHHHHHHHHHHSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             CCCCCCchhhHHH-HHHHHHHHHhCCCCccccChHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence            4444   569999 9999999999999987654444444444333444556678999999999999999     999987


Q ss_pred             c
Q 013230          434 F  434 (447)
Q Consensus       434 ~  434 (447)
                      +
T Consensus       263 ~  263 (271)
T 3kmu_A          263 P  263 (271)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=5e-33  Score=272.27  Aligned_cols=229  Identities=19%  Similarity=0.213  Sum_probs=183.6

Q ss_pred             CcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          134 PENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      |++.+.||+|+||.||+|.           .||+|++...       ......+.+.+|+.+++.++|        ||  
T Consensus        25 y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~-------~~~~~~~~~~~E~~~l~~l~h--------p~--   87 (314)
T 2ivs_A           25 LVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKEN-------ASPSELRDLLSEFNVLKQVNH--------PH--   87 (314)
T ss_dssp             EEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTT-------CCHHHHHHHHHHHHHHTTCCC--------TT--
T ss_pred             eeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCC-------CCHHHHHHHHHHHHHHhhCCC--------Cc--
Confidence            4999999999999999995           3899988643       122344678999999999988        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----------------
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----------------  266 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----------------  266 (447)
                        |+++++++.                              ..+.+|+||||+.+| +|.+++.                
T Consensus        88 --iv~~~~~~~------------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~  134 (314)
T 2ivs_A           88 --VIKLYGACS------------------------------QDGPLLLIVEYAKYG-SLRGFLRESRKVGPGYLGSGGSR  134 (314)
T ss_dssp             --BCCEEEEEC------------------------------SSSSCEEEEECCTTC-BHHHHHHHTTTSTTEEC------
T ss_pred             --eeeEEEEEe------------------------------cCCceEEEEeecCCC-CHHHHHHHHhhccCCcccccccc
Confidence              999999853                              256699999999988 9998874                


Q ss_pred             ------------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEee
Q 013230          267 ------------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIID  334 (447)
Q Consensus       267 ------------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~D  334 (447)
                                  +++..++.++.||+.||+|||+ +||+||||||+|||++.++                    .+||+|
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~-~~ivH~dikp~NIli~~~~--------------------~~kl~D  193 (314)
T 2ivs_A          135 NSSSLDHPDERALTMGDLISFAWQISQGMQYLAE-MKLVHRDLAARNILVAEGR--------------------KMKISD  193 (314)
T ss_dssp             ----------CEECHHHHHHHHHHHHHHHHHHHH-TTEECCCCSGGGEEEETTT--------------------EEEECC
T ss_pred             cccccccccccCcCHHHHHHHHHHHHHHHHHHHH-CCCcccccchheEEEcCCC--------------------CEEEcc
Confidence                        6888999999999999999999 9999999999999999887                    799999


Q ss_pred             ccceeecCCCCEE-------EEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCC
Q 013230          335 FTLSRINTGEDIF-------FLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTF  406 (447)
Q Consensus       335 FGla~~~~~~g~i-------~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~  406 (447)
                      ||+|+........       ....|++||.+.+...+.+.|||+ +|.+.+++++ +..|+........ ...+......
T Consensus       194 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s-lG~il~el~t~g~~p~~~~~~~~~-~~~~~~~~~~  271 (314)
T 2ivs_A          194 FGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWS-FGVLLWEIVTLGGNPYPGIPPERL-FNLLKTGHRM  271 (314)
T ss_dssp             CTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHH-HHHHHHHHHTTSCCSSTTCCGGGH-HHHHHTTCCC
T ss_pred             ccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHH-HHHHHHHHHhCCCCCCCCCCHHHH-HHHhhcCCcC
Confidence            9999876543221       122388999887766677789999 9999999998 8888765432222 2222223344


Q ss_pred             CCCccchHHHHHHHHHhcccc-----CHHHHHcC
Q 013230          407 DRSSKDERDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       407 ~~~~~~s~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      +.+..+++++++||.+||..|     |+.|+++|
T Consensus       272 ~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~  305 (314)
T 2ivs_A          272 ERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKD  305 (314)
T ss_dssp             CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            455678999999999999999     99998865

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=5e-33  Score=275.51  Aligned_cols=229  Identities=18%  Similarity=0.177  Sum_probs=181.9

Q ss_pred             CCcceEEeccccceEEEEece----------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN----------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~----------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      +|+++++||+|+||.||+|++          ||+|.+...       ........+.+|+.+++.++|        ||  
T Consensus        16 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~-------~~~~~~~~~~~E~~~l~~l~h--------~~--   78 (327)
T 3poz_A           16 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA-------TSPKANKEILDEAYVMASVDN--------PH--   78 (327)
T ss_dssp             GEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC--------------CHHHHHHHHHHHHHCCB--------TT--
T ss_pred             HcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccc-------cCHHHHHHHHHHHHHHHhCCC--------CC--
Confidence            359999999999999999973          466665422       223345778999999999998        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHH
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLV  277 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~  277 (447)
                        |+++++++..                               +..++||||+.+| +|.+++.     +++..++.++.
T Consensus        79 --iv~~~~~~~~-------------------------------~~~~~v~e~~~~g-~L~~~l~~~~~~~~~~~~~~~~~  124 (327)
T 3poz_A           79 --VCRLLGICLT-------------------------------STVQLITQLMPFG-CLLDYVREHKDNIGSQYLLNWCV  124 (327)
T ss_dssp             --BCCEEEEEES-------------------------------SSEEEEEECCTTC-BHHHHHHHSTTSCCHHHHHHHHH
T ss_pred             --EeEEEEEEec-------------------------------CCeEEEEEecCCC-cHHHHHHhcCCCCCHHHHHHHHH
Confidence              9999998642                               3488999999988 8888875     89999999999


Q ss_pred             HHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-------EEEe
Q 013230          278 QVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-------FFLD  350 (447)
Q Consensus       278 Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-------i~~~  350 (447)
                      ||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+|+.......       ....
T Consensus       125 qi~~~l~~LH~-~~ivH~Dikp~NIll~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~  183 (327)
T 3poz_A          125 QIAKGMNYLED-RRLVHRDLAARNVLVKTPQ--------------------HVKITDFGLAKLLGAEEKEYHAEGGKVPI  183 (327)
T ss_dssp             HHHHHHHHHHH-TTCCCSCCCGGGEEEEETT--------------------EEEECCTTHHHHHTTTCC-------CCCG
T ss_pred             HHHHHHHHHhh-CCeeCCCCChheEEECCCC--------------------CEEEccCcceeEccCCcccccccCCCccc
Confidence            99999999999 9999999999999999987                    799999999987543311       1122


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc--
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d--  427 (447)
                      .|++||.+.+...+.+.|||+ +|.+.+++++ +..|+....... +...+......+.+...+.++.+|+.+||+.|  
T Consensus       184 ~y~aPE~~~~~~~~~~~Di~s-lG~il~ellt~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  261 (327)
T 3poz_A          184 KWMALESILHRIYTHQSDVWS-YGVTVWELMTFGSKPYDGIPASE-ISSILEKGERLPQPPICTIDVYMIMVKCWMIDAD  261 (327)
T ss_dssp             GGSCHHHHHHCCCCHHHHHHH-HHHHHHHHHTTSCCTTTTCCGGG-HHHHHHTTCCCCCCTTBCHHHHHHHHHHTCSCGG
T ss_pred             cccChHHhccCCCCchhhhhh-hHHHHHHHHhcCCCCccCCCHHH-HHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChh
Confidence            489999998877788889999 9999999998 888886532222 22333333445556778999999999999999  


Q ss_pred             ---CHHHHHcC
Q 013230          428 ---SAKEAIFD  435 (447)
Q Consensus       428 ---sa~elL~H  435 (447)
                         |+.|+++|
T Consensus       262 ~Rps~~ell~~  272 (327)
T 3poz_A          262 SRPKFRELIIE  272 (327)
T ss_dssp             GSCCHHHHHHH
T ss_pred             hCCCHHHHHHH
Confidence               99998865

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=7.5e-33  Score=271.28  Aligned_cols=231  Identities=19%  Similarity=0.197  Sum_probs=184.5

Q ss_pred             CcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhcc-ccccCCCCCCCc
Q 013230          134 PENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN-HLRRNEGDTLNA  201 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~n~  201 (447)
                      |++.+.||+|+||.||+|+           .||+|++....       .......+.+|+.+++.+. |        || 
T Consensus        29 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~~~E~~~l~~l~~h--------p~-   92 (316)
T 2xir_A           29 LKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA-------THSEHRALMSELKILIHIGHH--------LN-   92 (316)
T ss_dssp             EEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC-------CHHHHHHHHHHHHHHHHHCCC--------TT-
T ss_pred             eeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCC-------CcHHHHHHHHHHHHHHhcccC--------CC-
Confidence            4999999999999999995           39999886432       2223457899999999994 4        66 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------------
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------------  266 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------------  266 (447)
                         |+++++++..                             .+..+|+||||+.+| +|.+++.               
T Consensus        93 ---iv~~~~~~~~-----------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~  139 (316)
T 2xir_A           93 ---VVNLLGACTK-----------------------------PGGPLMVIVEFCKFG-NLSTYLRSKRNEFVPYKVAPED  139 (316)
T ss_dssp             ---BCCEEEEECC-----------------------------TTSCCEEEEECCTTE-EHHHHHHTCTTSEECC------
T ss_pred             ---eeeEEEEEec-----------------------------CCCceEEEEEcCCCC-cHHHHHHhcccccccccccchh
Confidence               9999998532                             234589999999988 9999875               


Q ss_pred             -----CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeec
Q 013230          267 -----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRIN  341 (447)
Q Consensus       267 -----l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~  341 (447)
                           +++..++.++.||+.||.|||+ .||+||||||+|||++.++                    .+||+|||+++..
T Consensus       140 ~~~~~~~~~~~~~~~~qi~~al~~lH~-~~i~H~dikp~Nil~~~~~--------------------~~kl~Dfg~~~~~  198 (316)
T 2xir_A          140 LYKDFLTLEHLICYSFQVAKGMEFLAS-RKCIHRDLAARNILLSEKN--------------------VVKICDFGLARDI  198 (316)
T ss_dssp             -CTTCEEHHHHHHHHHHHHHHHHHHHH-TTCCCSCCSGGGEEECGGG--------------------CEEECCCGGGSCT
T ss_pred             hhccccCHHHHHHHHHHHHHHHHHHHh-CCcccccCccceEEECCCC--------------------CEEECCCcccccc
Confidence                 5788999999999999999999 9999999999999999887                    7999999999875


Q ss_pred             CCC-------CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccch
Q 013230          342 TGE-------DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDE  413 (447)
Q Consensus       342 ~~~-------g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s  413 (447)
                      ...       .......|++||++.+...+...|||+ +|.+.+++++ +..|+............+......+.+...+
T Consensus       199 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~s-lG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (316)
T 2xir_A          199 YKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWS-FGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTT  277 (316)
T ss_dssp             TTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHH-HHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCC
T ss_pred             ccCccceeccCCCcceeecCchhhccccccchhHHHH-HHHHHHHHHhCCCCCCcccchhHHHHHHhccCccCCCCCCCC
Confidence            433       222333489999998877777889999 9999999998 8888865432222333333333445556789


Q ss_pred             HHHHHHHHHhcccc-----CHHHHHcC
Q 013230          414 RDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       414 ~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      +++++||.+||..|     |+.|+++|
T Consensus       278 ~~l~~li~~~l~~dp~~Rps~~ell~~  304 (316)
T 2xir_A          278 PEMYQTMLDCWHGEPSQRPTFSELVEH  304 (316)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            99999999999999     99999876

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=1.6e-32  Score=271.44  Aligned_cols=232  Identities=17%  Similarity=0.161  Sum_probs=185.7

Q ss_pred             CCcceEEeccccceEEEEec----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          133 DPENIVKVGEGTFGEAFLAG----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      .|++++.||+|+||.||+|+          .||+|++....        ....+.+.+|+.+++.++|        +|  
T Consensus        24 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~h--------~~--   85 (327)
T 3lxl_A           24 HLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSG--------PDQQRDFQREIQILKALHS--------DF--   85 (327)
T ss_dssp             GEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCC--------HHHHHHHHHHHHHHHTCCC--------TT--
T ss_pred             hhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCC--------HHHHHHHHHHHHHHHhcCC--------Cc--
Confidence            45999999999999999997          29999886432        2234668999999999988        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHH
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLV  277 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~  277 (447)
                        |+++++++...                            ..+.+|+||||+.+| +|.+++.     +++..++.++.
T Consensus        86 --i~~~~~~~~~~----------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~i~~  134 (327)
T 3lxl_A           86 --IVKYRGVSYGP----------------------------GRQSLRLVMEYLPSG-CLRDFLQRHRARLDASRLLLYSS  134 (327)
T ss_dssp             --BCCEEEEEECS----------------------------SSCEEEEEEECCTTC-BHHHHHHHHGGGCCHHHHHHHHH
T ss_pred             --eeEEEEEEecC----------------------------CCceEEEEEeecCCC-CHHHHHHhcccCCCHHHHHHHHH
Confidence              99999986531                            246699999999988 9999875     89999999999


Q ss_pred             HHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEEE--------E
Q 013230          278 QVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFF--------L  349 (447)
Q Consensus       278 Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i~--------~  349 (447)
                      ||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+++.........        .
T Consensus       135 qi~~al~~lH~-~~ivH~Dikp~NIl~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~  193 (327)
T 3lxl_A          135 QICKGMEYLGS-RRCVHRDLAARNILVESEA--------------------HVKIADFGLAKLLPLDKDYYVVREPGQSP  193 (327)
T ss_dssp             HHHHHHHHHHH-TTEECSCCSGGGEEEEETT--------------------EEEECCGGGCEECCTTCSEEECSSCCCSC
T ss_pred             HHHHHHHHHHh-CCccCCCCChhhEEECCCC--------------------CEEEcccccceecccCCccceeeccCCcc
Confidence            99999999999 9999999999999999987                    79999999998765432111        1


Q ss_pred             ecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHH--------------HHHHHHHhhccCCCCCccchHH
Q 013230          350 DLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWL--------------VYLVDMLLLKKTFDRSSKDERD  415 (447)
Q Consensus       350 ~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~--------------~~~~~~l~~~~~~~~~~~~s~~  415 (447)
                      ..|++||.+.+.......|||+ +|.+.++++++..|+......              ......+......+.+..++++
T Consensus       194 ~~y~aPE~~~~~~~~~~~Di~s-lG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (327)
T 3lxl_A          194 IFWYAPESLSDNIFSRQSDVWS-FGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEGQRLPAPPACPAE  272 (327)
T ss_dssp             GGGSCHHHHHHCEEEHHHHHHH-HHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHHTTCCCCCCTTCCHH
T ss_pred             ccccCHHHhccCCCChHHhHHH-HHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHhhcccCCCCCCcccHH
Confidence            2278999988766667779999 999999999998887543221              1222333333445556778999


Q ss_pred             HHHHHHHhcccc-----CHHHHHcC
Q 013230          416 LRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       416 l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      +++||++||..|     |++|+++|
T Consensus       273 l~~li~~~l~~dP~~Rps~~ell~~  297 (327)
T 3lxl_A          273 VHELMKLCWAPSPQDRPSFSALGPQ  297 (327)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHH
Confidence            999999999999     99998644

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=2.8e-33  Score=271.11  Aligned_cols=236  Identities=19%  Similarity=0.172  Sum_probs=179.2

Q ss_pred             CCcceEEeccccceEEEEec-------------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCC
Q 013230          133 DPENIVKVGEGTFGEAFLAG-------------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTL  199 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-------------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~  199 (447)
                      +|++.+.||+|+||.||+|+             .||+|++...        .....+.+.+|+.+++.++|        |
T Consensus         9 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~--------~~~~~~~~~~E~~~l~~l~h--------~   72 (289)
T 4fvq_A            9 DLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKA--------HRNYSESFFEAASMMSKLSH--------K   72 (289)
T ss_dssp             GEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGG--------GGGGHHHHHHHHHHHHTSCC--------T
T ss_pred             HeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccc--------cHHHHHHHHHHHHHHHhCCC--------C
Confidence            35999999999999999995             3888887532        22345778999999999998        8


Q ss_pred             CcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHH
Q 013230          200 NACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARS  274 (447)
Q Consensus       200 n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~  274 (447)
                      |    |+++++++..                              ++..|+||||+.|| +|.+++.     +++..++.
T Consensus        73 ~----iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~  117 (289)
T 4fvq_A           73 H----LVLNYGVCVC------------------------------GDENILVQEFVKFG-SLDTYLKKNKNCINILWKLE  117 (289)
T ss_dssp             T----BCCEEEEECC------------------------------TTCCEEEEECCTTC-BHHHHHHHTGGGCCHHHHHH
T ss_pred             C----EeEEEEEEEe------------------------------CCCCEEEEECCCCC-CHHHHHHhCCCCCCHHHHHH
Confidence            8    9999998532                              56689999999988 9999886     89999999


Q ss_pred             HHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-EEEecCC
Q 013230          275 LLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-FFLDLSQ  353 (447)
Q Consensus       275 i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-i~~~~~~  353 (447)
                      ++.||+.||+|||+ .||+||||||+|||++.++...           .... ..+||+|||+++....... .....|+
T Consensus       118 i~~qi~~~L~~LH~-~~ivH~Dlkp~NIll~~~~~~~-----------~~~~-~~~kl~Dfg~~~~~~~~~~~~~~~~y~  184 (289)
T 4fvq_A          118 VAKQLAAAMHFLEE-NTLIHGNVCAKNILLIREEDRK-----------TGNP-PFIKLSDPGISITVLPKDILQERIPWV  184 (289)
T ss_dssp             HHHHHHHHHHHHHH-TTCCCCCCCGGGEEEEECCBGG-----------GTBC-CEEEECCCCSCTTTSCHHHHHHTTTTS
T ss_pred             HHHHHHHHHHHHhh-CCeECCCcCcceEEEecCCccc-----------cccc-ceeeeccCcccccccCccccCCcCccc
Confidence            99999999999999 9999999999999999886200           0000 1399999999976544321 1122388


Q ss_pred             CCCCCCC-CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----
Q 013230          354 DPELFSG-PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----  427 (447)
Q Consensus       354 ~pelf~g-~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----  427 (447)
                      +||.+.+ .....+.|||+ +|.+.++++++..|+...............  ....+...++++++||++||..|     
T Consensus       185 aPE~~~~~~~~~~~~Diws-lG~il~el~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~~l~~dp~~Rp  261 (289)
T 4fvq_A          185 PPECIENPKNLNLATDKWS-FGTTLWEICSGGDKPLSALDSQRKLQFYED--RHQLPAPKAAELANLINNCMDYEPDHRP  261 (289)
T ss_dssp             CHHHHHCGGGCCHHHHHHH-HHHHHHHHHTTTCCTTTTSCHHHHHHHHHT--TCCCCCCSSCTTHHHHHHHSCSSGGGSC
T ss_pred             CHHHhCCCCCCCchhHHHH-HHHHHHHHHcCCCCCccccchHHHHHHhhc--cCCCCCCCCHHHHHHHHHHcCCChhHCc
Confidence            9999987 45666779999 999999999965444332222222222222  22233456788999999999999     


Q ss_pred             CHHHHHcC
Q 013230          428 SAKEAIFD  435 (447)
Q Consensus       428 sa~elL~H  435 (447)
                      |+.|+++|
T Consensus       262 s~~~ll~~  269 (289)
T 4fvq_A          262 SFRAIIRD  269 (289)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            99999876

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=2.3e-32  Score=269.49  Aligned_cols=231  Identities=19%  Similarity=0.181  Sum_probs=185.5

Q ss_pred             CcceEEeccccceEEEEec----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccc
Q 013230          134 PENIVKVGEGTFGEAFLAG----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACT  203 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~  203 (447)
                      |+++++||+|+||.||+|.          .||+|++....       .....+.+.+|+.+++.++|        ||   
T Consensus        33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------~~---   94 (318)
T 3lxp_A           33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADA-------GPQHRSGWKQEIDILRTLYH--------EH---   94 (318)
T ss_dssp             EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTC-------CHHHHHHHHHHHHHHHHCCC--------TT---
T ss_pred             HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEecccc-------ChHHHHHHHHHHHHHHhCCC--------cc---
Confidence            4899999999999998763          39999987442       22345678999999999998        88   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHH
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVT  280 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil  280 (447)
                       |+++++++...+                            ...+|+||||+.+| +|.+++.   +++..++.++.||+
T Consensus        95 -iv~~~~~~~~~~----------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~i~~~l~  144 (318)
T 3lxp_A           95 -IIKYKGCCEDAG----------------------------AASLQLVMEYVPLG-SLRDYLPRHSIGLAQLLLFAQQIC  144 (318)
T ss_dssp             -BCCEEEEEEETT----------------------------TTEEEEEECCCTTC-BHHHHGGGSCCCHHHHHHHHHHHH
T ss_pred             -hhhEEEEEecCC----------------------------CceEEEEEecccCC-cHHHHHhhCCCCHHHHHHHHHHHH
Confidence             999999976422                            35689999999988 9999987   89999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE--------EEecC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF--------FLDLS  352 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i--------~~~~~  352 (447)
                      .||+|||+ .||+||||||+|||++.++                    .+||+|||+|+........        ....|
T Consensus       145 ~~l~~LH~-~~ivH~Dikp~Nil~~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y  203 (318)
T 3lxp_A          145 EGMAYLHA-QHYIHRDLAARNVLLDNDR--------------------LVKIGDFGLAKAVPEGHEYYRVREDGDSPVFW  203 (318)
T ss_dssp             HHHHHHHH-TTEECSCCSGGGEEECTTC--------------------CEEECCGGGCEECCTTCSEEEC---CCCCGGG
T ss_pred             HHHHHHHh-CCccCCCCchheEEEcCCC--------------------CEEECCccccccccccccccccccCCCCCcee
Confidence            99999999 9999999999999999887                    7999999999886554211        11227


Q ss_pred             CCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHH--------------HHHHHHHhhccCCCCCccchHHHHH
Q 013230          353 QDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWL--------------VYLVDMLLLKKTFDRSSKDERDLRS  418 (447)
Q Consensus       353 ~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~--------------~~~~~~l~~~~~~~~~~~~s~~l~d  418 (447)
                      ++||.+.+...+.+.|||+ +|.+.++++++..|+......              ..+...+......+.+..+++++.+
T Consensus       204 ~aPE~~~~~~~~~~~Di~s-lG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  282 (318)
T 3lxp_A          204 YAPECLKEYKFYYASDVWS-FGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPDKCPAEVYH  282 (318)
T ss_dssp             CCHHHHHHCEEEHHHHHHH-HHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCCCCCTTCCHHHHH
T ss_pred             eChHHhcCCCCCcHHHHHH-HHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHhcccCCCCCccccHHHHH
Confidence            8999988766667779999 999999999998887543211              1122223233445556778999999


Q ss_pred             HHHHhcccc-----CHHHHHc
Q 013230          419 LKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       419 Ll~~mL~~d-----sa~elL~  434 (447)
                      ||++||..|     |++|+++
T Consensus       283 li~~~l~~dP~~Rps~~ell~  303 (318)
T 3lxp_A          283 LMKNCWETEASFRPTFENLIP  303 (318)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHcCCCcccCcCHHHHHH
Confidence            999999999     9999874

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.98  E-value=9.9e-33  Score=273.12  Aligned_cols=231  Identities=18%  Similarity=0.168  Sum_probs=184.0

Q ss_pred             CCcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCC
Q 013230          133 DPENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLN  200 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n  200 (447)
                      +|++.+.||+|+||.||+|.           .||+|++....       .....+.+.+|+.+++.+ +|        ||
T Consensus        47 ~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~~~E~~~l~~l~~h--------~~  111 (333)
T 2i1m_A           47 NLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTA-------HADEKEALMSELKIMSHLGQH--------EN  111 (333)
T ss_dssp             SEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTC-------CHHHHHHHHHHHHHHHHHCCC--------TT
T ss_pred             HceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhccccc-------ChHHHHHHHHHHHHHHhhcCC--------CC
Confidence            45999999999999999997           38888876432       222346789999999999 67        77


Q ss_pred             cccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------------
Q 013230          201 ACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------------  266 (447)
Q Consensus       201 ~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------------  266 (447)
                          |+++++++.                              ..+.+|+||||+.+| +|.+++.              
T Consensus       112 ----iv~~~~~~~------------------------------~~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~~  156 (333)
T 2i1m_A          112 ----IVNLLGACT------------------------------HGGPVLVITEYCCYG-DLLNFLRRKSRVLETDPAFAI  156 (333)
T ss_dssp             ----BCCEEEEEC------------------------------SSSSCEEEEECCTTE-EHHHHHHHHHHHHSCC-----
T ss_pred             ----eeeEEEEEe------------------------------cCCceEEEEecCCCC-cHHHHHHHhcccccccccccc
Confidence                999999853                              246699999999988 9998874              


Q ss_pred             ----CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC
Q 013230          267 ----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT  342 (447)
Q Consensus       267 ----l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~  342 (447)
                          +++..++.++.||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+|+...
T Consensus       157 ~~~~~~~~~~~~~~~qi~~~l~~lH~-~~ivH~Dlkp~NIl~~~~~--------------------~~kl~Dfg~~~~~~  215 (333)
T 2i1m_A          157 ANSTASTRDLLHFSSQVAQGMAFLAS-KNCIHRDVAARNVLLTNGH--------------------VAKIGDFGLARDIM  215 (333)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHHHHH-TTEECSCCSGGGCEEEGGG--------------------EEEBCCCGGGCCGG
T ss_pred             cccccCHHHHHHHHHHHHHHHHHHhc-CCcccCCcccceEEECCCC--------------------eEEECccccccccc
Confidence                5889999999999999999999 9999999999999999887                    79999999998653


Q ss_pred             CC-------CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchH
Q 013230          343 GE-------DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDER  414 (447)
Q Consensus       343 ~~-------g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~  414 (447)
                      ..       .......|++||.+.+...+.+.|||+ +|.+.+++++ +..|+............+......+.+...++
T Consensus       216 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s-lG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (333)
T 2i1m_A          216 NDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWS-YGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPK  294 (333)
T ss_dssp             GCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHH-HHHHHHHHTTTSCCSSTTCCSSHHHHHHHHHTCCCCCCTTCCH
T ss_pred             cccceeecCCCCCCccccCHHHhccCCCChHHHHHH-HHHHHHHHHcCCCCCCcccchhHHHHHHHhcCCCCCCCCCCCH
Confidence            32       122333589999988777777789999 9999999998 77787654322223333333334444566789


Q ss_pred             HHHHHHHHhcccc-----CHHHHHcC
Q 013230          415 DLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       415 ~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      ++.+||.+||..|     |+.|++++
T Consensus       295 ~l~~li~~~l~~~p~~Rps~~~l~~~  320 (333)
T 2i1m_A          295 NIYSIMQACWALEPTHRPTFQQICSF  320 (333)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHHhccChhhCcCHHHHHHH
Confidence            9999999999999     99998863

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.98  E-value=6.8e-33  Score=280.29  Aligned_cols=229  Identities=20%  Similarity=0.217  Sum_probs=184.3

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||+|+||.||+|+.      ||+|++....       .....+.+.+|+.+|+.++|        ||    |+
T Consensus       115 ~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------pn----iv  175 (377)
T 3cbl_A          115 DLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETL-------PPDLKAKFLQEARILKQYSH--------PN----IV  175 (377)
T ss_dssp             GEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTS-------CHHHHTTTTHHHHHHTTCCC--------TT----BC
T ss_pred             HeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccC-------CHHHHHHHHHHHHHHHhCCC--------CC----EE
Confidence            359999999999999999973      9999876331       22233457899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      ++++++.                              .++.+|+||||+.+| +|.+++.     +++..+..++.||+.
T Consensus       176 ~~~~~~~------------------------------~~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~~~~qi~~  224 (377)
T 3cbl_A          176 RLIGVCT------------------------------QKQPIYIVMELVQGG-DFLTFLRTEGARLRVKTLLQMVGDAAA  224 (377)
T ss_dssp             CEEEEEC------------------------------SSSSCEEEEECCTTC-BHHHHHHHHGGGCCHHHHHHHHHHHHH
T ss_pred             EEEEEEe------------------------------cCCCcEEEEEcCCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            9999853                              245689999999988 9999875     899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------C-EEEEecCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------D-IFFLDLSQD  354 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g-~i~~~~~~~  354 (447)
                      ||+|||+ .||+||||||+|||++.++                    .+||+|||+|+.....      + ......|++
T Consensus       225 ~l~~LH~-~~ivHrDlkp~Nil~~~~~--------------------~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~a  283 (377)
T 3cbl_A          225 GMEYLES-KCCIHRDLAARNCLVTEKN--------------------VLKISDFGMSREEADGVYAASGGLRQVPVKWTA  283 (377)
T ss_dssp             HHHHHHH-TTEECSCCSGGGEEECTTC--------------------CEEECCGGGCEECTTSEEECCSSCCEEEGGGSC
T ss_pred             HHHHHHH-CCcCCcccCHHHEEEcCCC--------------------cEEECcCCCceecCCCceeecCCCCCCCcCcCC
Confidence            9999999 9999999999999999887                    7999999999875432      1 112334899


Q ss_pred             CCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C
Q 013230          355 PELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S  428 (447)
Q Consensus       355 pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s  428 (447)
                      ||.+.+...+.+.|+|+ +|.+.+++++ |..|+........ ...+......+.+...++++.+||.+||..|     |
T Consensus       284 PE~~~~~~~~~~~Dvws-lG~il~el~t~g~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps  361 (377)
T 3cbl_A          284 PEALNYGRYSSESDVWS-FGILLWETFSLGASPYPNLSNQQT-REFVEKGGRLPCPELCPDAVFRLMEQCWAYEPGQRPS  361 (377)
T ss_dssp             HHHHHHCEEEHHHHHHH-HHHHHHHHHTTSCCSSTTSCHHHH-HHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred             HhHhccCCCCchhhHHH-HHHHHHHHHhCCCCCCCCCCHHHH-HHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCchhCcC
Confidence            99998766677779999 9999999998 7788865433222 2223233455566778999999999999999     8


Q ss_pred             HHHHHc
Q 013230          429 AKEAIF  434 (447)
Q Consensus       429 a~elL~  434 (447)
                      ++++++
T Consensus       362 ~~~i~~  367 (377)
T 3cbl_A          362 FSTIYQ  367 (377)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988874

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.98  E-value=1.4e-32  Score=277.80  Aligned_cols=229  Identities=17%  Similarity=0.175  Sum_probs=176.2

Q ss_pred             CCcceEEeccccceEEEEec---------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccc
Q 013230          133 DPENIVKVGEGTFGEAFLAG---------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACT  203 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~---------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~  203 (447)
                      +|++.+.||+|+||.||+|+         .||+|++....       .....+.+.+|+.++++++|        ||   
T Consensus        46 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------~n---  107 (373)
T 2qol_A           46 NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGY-------TEKQRRDFLGEASIMGQFDH--------PN---  107 (373)
T ss_dssp             GCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTC-------CHHHHHHHHHHHHHHTTCCC--------TT---
T ss_pred             hceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCcc-------CHHHHHHHHHHHHHHHhCCC--------CC---
Confidence            35999999999999999985         28999886431       22344678999999999988        88   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHH
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQ  278 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Q  278 (447)
                       |+++++++.                              ..+.+|+||||+.+| +|.+++.     +++..+..++.|
T Consensus       108 -iv~~~~~~~------------------------------~~~~~~lv~e~~~~~-sL~~~l~~~~~~~~~~~~~~i~~q  155 (373)
T 2qol_A          108 -IIRLEGVVT------------------------------KSKPVMIVTEYMENG-SLDSFLRKHDAQFTVIQLVGMLRG  155 (373)
T ss_dssp             -BCCEEEEEC------------------------------SSSSCEEEEECCTTC-BHHHHHHTTTTCSCHHHHHHHHHH
T ss_pred             -CCeEEEEEe------------------------------eCCceEEEEeCCCCC-cHHHHHHhCCCCCCHHHHHHHHHH
Confidence             999999843                              246689999999988 9999985     899999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE--------EEEe
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI--------FFLD  350 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~--------i~~~  350 (447)
                      |+.||+|||+ .||+||||||+|||++.++                    .+||+|||+|+.......        ....
T Consensus       156 i~~aL~~LH~-~~ivH~Dlkp~NIll~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~  214 (373)
T 2qol_A          156 IASGMKYLSD-MGYVHRDLAARNILINSNL--------------------VCKVSDFGLGRVLEDDPEAAYTTRGGKIPI  214 (373)
T ss_dssp             HHHHHHHHHH-TTCCCSCCCGGGEEECTTC--------------------CEEECCC----------------------C
T ss_pred             HHHHHHHHHH-CCeeCCCCCcceEEEcCCC--------------------CEEECcCccccccccCCccceeccCCCcCC
Confidence            9999999999 9999999999999999887                    799999999987644311        1123


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc--
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d--  427 (447)
                      .|++||.+.+...+.+.|||+ +|.+.+++++ |..|+.......... .+......+.+...+.++.+|+.+||..|  
T Consensus       215 ~y~aPE~~~~~~~~~~~Dv~S-lG~il~ellt~g~~P~~~~~~~~~~~-~i~~~~~~~~~~~~~~~l~~li~~cl~~dp~  292 (373)
T 2qol_A          215 RWTSPEAIAYRKFTSASDVWS-YGIVLWEVMSYGERPYWEMSNQDVIK-AVDEGYRLPPPMDCPAALYQLMLDCWQKDRN  292 (373)
T ss_dssp             TTSCHHHHHHCCCCHHHHHHH-HHHHHHHHHTTC-CTTTTCCHHHHHH-HHHTTEECCCCTTCBHHHHHHHHHHTCSSGG
T ss_pred             CccChhhhccCCcCchhcHHH-HHHHHHHHHhCCCCCCCCCCHHHHHH-HHHcCCCCCCCccccHHHHHHHHHHhCcChh
Confidence            489999998877778889999 9999999887 888886544333322 22223345555678899999999999999  


Q ss_pred             ---CHHHHHc
Q 013230          428 ---SAKEAIF  434 (447)
Q Consensus       428 ---sa~elL~  434 (447)
                         |+.|+++
T Consensus       293 ~RPs~~~i~~  302 (373)
T 2qol_A          293 NRPKFEQIVS  302 (373)
T ss_dssp             GSCCHHHHHH
T ss_pred             hCcCHHHHHH
Confidence               8887764

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.98  E-value=1.2e-32  Score=268.02  Aligned_cols=229  Identities=18%  Similarity=0.170  Sum_probs=179.9

Q ss_pred             CcceEEeccccceEEEEece---------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          134 PENIVKVGEGTFGEAFLAGN---------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~---------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      |++.+.||+|+||.||+|+.         +|+|.+...       ......+.+.+|+.++++++|        ||    
T Consensus        27 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~-------~~~~~~~~~~~E~~~l~~l~h--------~~----   87 (298)
T 3f66_A           27 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI-------TDIGEVSQFLTEGIIMKDFSH--------PN----   87 (298)
T ss_dssp             EEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTC-------CSHHHHHHHHHHHHHHHTCCC--------TT----
T ss_pred             hhhcceeeecCCceEEEEEEecCCCceeEEEEEecccC-------CCHHHHHHHHHHHHHHHhCCC--------CC----
Confidence            48999999999999999972         788877632       223344678999999999988        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQV  279 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qi  279 (447)
                      |+++++++..                             .++..|+||||+.+| +|.+++.     +++..++.++.||
T Consensus        88 iv~~~~~~~~-----------------------------~~~~~~~v~e~~~~~-~L~~~l~~~~~~~~~~~~~~i~~ql  137 (298)
T 3f66_A           88 VLSLLGICLR-----------------------------SEGSPLVVLPYMKHG-DLRNFIRNETHNPTVKDLIGFGLQV  137 (298)
T ss_dssp             BCCCCEEECC-----------------------------SSSCCEEEEECCTTC-BHHHHHHCTTCCCCHHHHHHHHHHH
T ss_pred             EeeeeeEEEc-----------------------------CCCceEEEEeCCCCC-CHHHHHHhcccCCCHHHHHHHHHHH
Confidence            9999998422                             245689999999988 9999985     8899999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC---------EEEEe
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED---------IFFLD  350 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g---------~i~~~  350 (447)
                      +.||+|||+ .||+||||||+|||++.++                    .+||+|||+|+......         .....
T Consensus       138 ~~~l~~lH~-~~i~H~dikp~Nil~~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~  196 (298)
T 3f66_A          138 AKGMKYLAS-KKFVHRDLAARNCMLDEKF--------------------TVKVADFGLARDMYDKEYYSVHNKTGAKLPV  196 (298)
T ss_dssp             HHHHHHHHH-TTCCCSCCSGGGEEECTTC--------------------CEEECSCGGGCCCSCGGGCBC-----CCBCG
T ss_pred             HHHHHHHHh-CCccCCCCchheEEECCCC--------------------CEEECcccccccccccchhccccccCCCCCc
Confidence            999999999 9999999999999999887                    79999999998654321         11123


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCcccccCC-CCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc--
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGS-FPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~-~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d--  427 (447)
                      .|++||.+.+...+.+.|+|+ +|.+.++++.+. .|+............. .......+...++++.+|+.+||..|  
T Consensus       197 ~y~aPE~~~~~~~~~~~Di~s-lG~il~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~l~~~p~  274 (298)
T 3f66_A          197 KWMALESLQTQKFTTKSDVWS-FGVLLWELMTRGAPPYPDVNTFDITVYLL-QGRRLLQPEYCPDPLYEVMLKCWHPKAE  274 (298)
T ss_dssp             GGSCHHHHHHCCCCHHHHHHH-HHHHHHHHHTTSCCSSTTSCTTTHHHHHH-TTCCCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             cccChHHhcCCCCChHHHHHH-HHHHHHHHHhCCCCCCccCCHHHHHHHHh-cCCCCCCCccCCHHHHHHHHHHcCCChh
Confidence            488999998877777889999 999999999854 4544332222222222 22333345668899999999999999  


Q ss_pred             ---CHHHHHc
Q 013230          428 ---SAKEAIF  434 (447)
Q Consensus       428 ---sa~elL~  434 (447)
                         |+.|+++
T Consensus       275 ~Rps~~ell~  284 (298)
T 3f66_A          275 MRPSFSELVS  284 (298)
T ss_dssp             GSCCHHHHHH
T ss_pred             hCcCHHHHHH
Confidence               8988875

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.98  E-value=3.9e-33  Score=275.85  Aligned_cols=229  Identities=17%  Similarity=0.135  Sum_probs=180.7

Q ss_pred             CCcceEEeccccceEEEEece----------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN----------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~----------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      +|++++.||+|+||.||+|++          ||+|.+....       .......+.+|+.+++.++|        ||  
T Consensus        14 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~-------~~~~~~~~~~e~~~l~~l~h--------~~--   76 (325)
T 3kex_A           14 ELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKS-------GRQSFQAVTDHMLAIGSLDH--------AH--   76 (325)
T ss_dssp             TEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTT-------SCSCBCSCCHHHHHHHTCCC--------TT--
T ss_pred             HceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccc-------cHHHHHHHHHHHHHHhcCCC--------CC--
Confidence            469999999999999999973          6666654321       12223456789999999988        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHH
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLV  277 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~  277 (447)
                        |+++++++.                               .+..|+||||+.+| +|.+++.     +++..++.++.
T Consensus        77 --iv~~~~~~~-------------------------------~~~~~~v~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~  122 (325)
T 3kex_A           77 --IVRLLGLCP-------------------------------GSSLQLVTQYLPLG-SLLDHVRQHRGALGPQLLLNWGV  122 (325)
T ss_dssp             --BCCEEEEEC-------------------------------BSSEEEEEECCTTC-BSHHHHHSSGGGSCTTHHHHHHH
T ss_pred             --cCeEEEEEc-------------------------------CCccEEEEEeCCCC-CHHHHHHHccccCCHHHHHHHHH
Confidence              999999742                               35589999999988 8988874     88999999999


Q ss_pred             HHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-------EEEEe
Q 013230          278 QVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-------IFFLD  350 (447)
Q Consensus       278 Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-------~i~~~  350 (447)
                      ||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+|+......       .....
T Consensus       123 qi~~~l~~lH~-~~ivH~Dikp~Nil~~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~  181 (325)
T 3kex_A          123 QIAKGMYYLEE-HGMVHRNLAARNVLLKSPS--------------------QVQVADFGVADLLPPDDKQLLYSEAKTPI  181 (325)
T ss_dssp             HHHHHHHHHHH-TTCCCSCCSSTTEEESSSS--------------------CEEECSCSGGGGSCCCTTCCC-----CCT
T ss_pred             HHHHHHHHHHh-CCCCCCccchheEEECCCC--------------------eEEECCCCcccccCcccccccccCCCCcc
Confidence            99999999999 9999999999999999887                    79999999998754331       11222


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc--
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d--  427 (447)
                      .|++||.+.+...+.+.|+|+ +|.+.+++++ |..|+......... ..+......+.+...+.++.+||.+||..|  
T Consensus       182 ~y~aPE~~~~~~~~~~~Di~s-lG~~l~el~~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~  259 (325)
T 3kex_A          182 KWMALESIHFGKYTHQSDVWS-YGVTVWELMTFGAEPYAGLRLAEVP-DLLEKGERLAQPQICTIDVYMVMVKCWMIDEN  259 (325)
T ss_dssp             TTSCHHHHHHCCCCHHHHHHH-HHHHHHHHHTTSCCTTTTSCTTHHH-HHHHTTCBCCCCTTBCTTTTHHHHHHTCSCTT
T ss_pred             cccChHHhccCCCChhhHhHH-hHHHHHHHHhCCCCCccccCHHHHH-HHHHcCCCCCCCCcCcHHHHHHHHHHcCCChh
Confidence            489999998777777889999 9999999999 88888654322222 222223344455668889999999999999  


Q ss_pred             ---CHHHHHcC
Q 013230          428 ---SAKEAIFD  435 (447)
Q Consensus       428 ---sa~elL~H  435 (447)
                         |+.|+++|
T Consensus       260 ~Rps~~el~~~  270 (325)
T 3kex_A          260 IRPTFKELANE  270 (325)
T ss_dssp             TSCCHHHHHHH
T ss_pred             hCcCHHHHHHH
Confidence               89998765

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.98  E-value=9.3e-33  Score=284.70  Aligned_cols=234  Identities=23%  Similarity=0.196  Sum_probs=173.4

Q ss_pred             CcceEEeccccceEEEE-ec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFL-AG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~-a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+..+.||+|+||+|+. +.    .||||++.....           ..+.+|+.+++.+ +|        ||    ||+
T Consensus        26 y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~-----------~~~~~E~~~l~~l~~H--------pn----Iv~   82 (432)
T 3p23_A           26 FCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF-----------SFADREVQLLRESDEH--------PN----VIR   82 (432)
T ss_dssp             EEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE-----------EECHHHHHHHHHSCCC--------TT----BCC
T ss_pred             EecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH-----------HHHHHHHHHHHhccCC--------CC----cCe
Confidence            58999999999998654 32    499998864321           1246899999998 56        77    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++..                              .+.+|||||||. | +|.+++.     +.+..++.++.||+.|
T Consensus        83 l~~~~~~------------------------------~~~~~lv~E~~~-g-~L~~~l~~~~~~~~~~~~~~i~~qi~~a  130 (432)
T 3p23_A           83 YFCTEKD------------------------------RQFQYIAIELCA-A-TLQEYVEQKDFAHLGLEPITLLQQTTSG  130 (432)
T ss_dssp             EEEEEEE------------------------------TTEEEEEEECCS-E-EHHHHHHSSSCCCCSSCHHHHHHHHHHH
T ss_pred             EEEEEec------------------------------CCEEEEEEECCC-C-CHHHHHHhcCCCccchhHHHHHHHHHHH
Confidence            9988543                              566899999996 6 8998876     5556778999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC--------EEEEecCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED--------IFFLDLSQD  354 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g--------~i~~~~~~~  354 (447)
                      |+|||+ .||+||||||+|||++.++.               ...+.+||+|||+|+......        ......|++
T Consensus       131 L~~LH~-~~ivHrDlKp~NIll~~~~~---------------~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~A  194 (432)
T 3p23_A          131 LAHLHS-LNIVHRDLKPHNILISMPNA---------------HGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIA  194 (432)
T ss_dssp             HHHHHH-TTCCCCCCSTTSEEECCCBT---------------TTBCCEEECCTTEEECC------------CCSCTTSCC
T ss_pred             HHHHHH-CcCEeCCCCHHHEEEecCCC---------------CCceeEEEecccceeeccCCCcceeeccccCCCcCccC
Confidence            999999 99999999999999965321               001368999999998765331        123345899


Q ss_pred             CCCCCC---CCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccC---CCCCccchHHHHHHHHHhcccc
Q 013230          355 PELFSG---PKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKT---FDRSSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       355 pelf~g---~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~---~~~~~~~s~~l~dLl~~mL~~d  427 (447)
                      ||++.+   .....+.|||+ +|++.+++++ +..|+.......  ...+.....   .......+..+++||.+||..|
T Consensus       195 PE~l~~~~~~~~t~~~DiwS-lG~il~ellt~g~~pf~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d  271 (432)
T 3p23_A          195 PEMLSEDCKENPTYTVDIFS-AGCVFYYVISEGSHPFGKSLQRQ--ANILLGACSLDCLHPEKHEDVIARELIEKMIAMD  271 (432)
T ss_dssp             GGGTSCC---CCCTHHHHHH-HHHHHHHHHTTSCBTTBSTTTHH--HHHHTTCCCCTTSCTTCHHHHHHHHHHHHHSCSS
T ss_pred             hhhhhcccccCCCcHHHHHH-HHHHHHHHHcCCCCCcchhhHHH--HHHHhccCCccccCccccccHHHHHHHHHHHhCC
Confidence            999974   34445679999 9999999998 778875432211  111211211   2223456788999999999999


Q ss_pred             -----CHHHHHcCCCCCCC
Q 013230          428 -----SAKEAIFDPFFSDL  441 (447)
Q Consensus       428 -----sa~elL~HPff~~~  441 (447)
                           |++|+++||||+++
T Consensus       272 P~~Rps~~evl~hp~f~~~  290 (432)
T 3p23_A          272 PQKRPSAKHVLKHPFFWSL  290 (432)
T ss_dssp             GGGSCCHHHHHTSTTTCCH
T ss_pred             HhhCCCHHHHHhCccccCh
Confidence                 99999999999864

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.98  E-value=1.9e-32  Score=271.60  Aligned_cols=228  Identities=18%  Similarity=0.181  Sum_probs=178.7

Q ss_pred             CCcceEEeccccceEEEEece----------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN----------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~----------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      +|+++++||+|+||.||+|++          +|+|.+...       ........+.+|+.+++.++|        ||  
T Consensus        16 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~-------~~~~~~~~~~~E~~~l~~l~h--------p~--   78 (327)
T 3lzb_A           16 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA-------TSPKANKEILDEAYVMASVDN--------PH--   78 (327)
T ss_dssp             TEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCC-------SSCCCHHHHHHHHHHHTTCCB--------TT--
T ss_pred             HceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccc-------cCHHHHHHHHHHHHHHHhCCC--------CC--
Confidence            469999999999999999973          456655422       233455788999999999998        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHH
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLV  277 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~  277 (447)
                        |+++++++..                               +..+++|+|+.+| +|.+++.     +++..++.++.
T Consensus        79 --iv~~~~~~~~-------------------------------~~~~~v~~~~~~g-~L~~~l~~~~~~~~~~~~~~i~~  124 (327)
T 3lzb_A           79 --VCRLLGICLT-------------------------------STVQLITQLMPFG-CLLDYVREHKDNIGSQYLLNWCV  124 (327)
T ss_dssp             --BCCCCEEEES-------------------------------SSEEEEECCCSSC-BHHHHHHHTTTCCCHHHHHHHHH
T ss_pred             --eeEEEEEEec-------------------------------CCceEEEEecCCC-cHHHHHHhcCCCCCHHHHHHHHH
Confidence              9999998642                               3488999999988 8888875     89999999999


Q ss_pred             HHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-------EEEe
Q 013230          278 QVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-------FFLD  350 (447)
Q Consensus       278 Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-------i~~~  350 (447)
                      ||+.||.|||+ .||+||||||+|||++.++                    .+||+|||+|+.......       ....
T Consensus       125 qi~~aL~~LH~-~~ivH~Dikp~NIl~~~~~--------------------~~kL~DfG~a~~~~~~~~~~~~~~~~~t~  183 (327)
T 3lzb_A          125 QIAKGMNYLED-RRLVHRDLAARNVLVKTPQ--------------------HVKITDFGLAKLLGAEEKEYHAEGGKVPI  183 (327)
T ss_dssp             HHHHHHHHHHH-TTCCCSCCCGGGEEEEETT--------------------EEEECCTTC----------------CCCG
T ss_pred             HHHHHHHHHhh-CCCcCCCCCHHHEEEcCCC--------------------CEEEccCcceeEccCccccccccCCCccc
Confidence            99999999999 9999999999999999987                    799999999987643311       1122


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc--
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d--  427 (447)
                      .|++||.+.+...+.+.|||+ +|.+.++++. +..|+....... +...+......+.+...+.++.+||++||..|  
T Consensus       184 ~y~aPE~~~~~~~~~~~Di~s-lG~il~ell~~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~  261 (327)
T 3lzb_A          184 KWMALESILHRIYTHQSDVWS-YGVTVWELMTFGSKPYDGIPASE-ISSILEKGERLPQPPICTIDVYMIMRKCWMIDAD  261 (327)
T ss_dssp             GGSCHHHHHHCCCCHHHHHHH-HHHHHHHHHTTSCCTTTTCCGGG-HHHHHHTTCCCCCCTTBCHHHHHHHHHHTCSSGG
T ss_pred             cccCHHHHcCCCCChHHHHHH-HHHHHHHHHHCCCCCCCCCCHHH-HHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChh
Confidence            489999998877788889999 9999999998 888886543222 22333333455566778999999999999999  


Q ss_pred             ---CHHHHHc
Q 013230          428 ---SAKEAIF  434 (447)
Q Consensus       428 ---sa~elL~  434 (447)
                         |+.|+++
T Consensus       262 ~Rps~~ell~  271 (327)
T 3lzb_A          262 SRPKFRELII  271 (327)
T ss_dssp             GSCCHHHHHH
T ss_pred             HCcCHHHHHH
Confidence               8988875

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.98  E-value=3.1e-32  Score=264.60  Aligned_cols=230  Identities=19%  Similarity=0.210  Sum_probs=175.5

Q ss_pred             CCcceEEeccccceEEEEec---eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeee
Q 013230          133 DPENIVKVGEGTFGEAFLAG---NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMF  209 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~---~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~  209 (447)
                      .|++.++||+|+||.||+|+   .+|+|++.....      .....+.+.+|+.+++.++|        ||    |++++
T Consensus        25 ~y~~~~~lG~G~~g~Vy~~~~~~~vavK~~~~~~~------~~~~~~~~~~E~~~l~~l~h--------~~----iv~~~   86 (289)
T 3og7_A           25 QITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAP------TPQQLQAFKNEVGVLRKTRH--------VN----ILLFM   86 (289)
T ss_dssp             SCEEEEEEEECSSEEEEEEESSSEEEEEEESCSSC------CHHHHHHHHHHHHHHTTCCC--------TT----BCCEE
T ss_pred             ceeeeeEecCCCCeEEEEEEEcCceEEEEEeccCC------CHHHHHHHHHHHHHHHhCCC--------Cc----EEEEE
Confidence            35999999999999999997   499999875432      23345678999999999998        88    99998


Q ss_pred             eEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHHHH
Q 013230          210 EIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       210 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~gL~  284 (447)
                      ++.                               ....+++||||+.+| +|.+++.     +++..++.++.||+.||+
T Consensus        87 ~~~-------------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~  134 (289)
T 3og7_A           87 GYS-------------------------------TAPQLAIVTQWCEGS-SLYHHLHASETKFEMKKLIDIARQTARGMD  134 (289)
T ss_dssp             EEE-------------------------------CSSSCEEEEECCCEE-EHHHHHTTC---CCHHHHHHHHHHHHHHHH
T ss_pred             eec-------------------------------cCCccEEEEEecCCC-cHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Confidence            862                               135589999999987 9998884     899999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-------CEEEEecCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-------DIFFLDLSQDPEL  357 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-------g~i~~~~~~~pel  357 (447)
                      |||+ .||+||||||+|||++.++                    .+||+|||+|+.....       .......|++||.
T Consensus       135 ~lH~-~~i~H~Dlkp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~  193 (289)
T 3og7_A          135 YLHA-KSIIHRDLKSNNIFLHEDN--------------------TVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEV  193 (289)
T ss_dssp             HHHH-TTCCCSCCCGGGEEEETTT--------------------EEEECCCC------------------CCCTTCCHHH
T ss_pred             HHHh-CCcccccCccceEEECCCC--------------------CEEEccceeccccccccccccccccCCCccccCchh
Confidence            9999 9999999999999999987                    7999999999765431       1123445889998


Q ss_pred             CC---CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCC----CCccchHHHHHHHHHhcccc---
Q 013230          358 FS---GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFD----RSSKDERDLRSLKKRLDKYN---  427 (447)
Q Consensus       358 f~---g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~----~~~~~s~~l~dLl~~mL~~d---  427 (447)
                      +.   +...+.+.|||+ +|.+.++++.+..|+........+...+......+    ....+++++++||.+||..|   
T Consensus       194 ~~~~~~~~~~~~~Di~s-lG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~  272 (289)
T 3og7_A          194 IRMQDSNPYSFQSDVYA-FGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDE  272 (289)
T ss_dssp             HC----CCSCHHHHHHH-HHHHHHHHHHSSCTTSSCCCHHHHHHHHHHTSCCCCTTSSCTTSCHHHHHHHHHHTCSSGGG
T ss_pred             hcccCCCCCCcccchHH-HHHHHHHHHHCCCCccccchHHHHHHHhcccccCcchhhccccCCHHHHHHHHHHccCChhh
Confidence            86   444555779999 99999999999999865432222233322221111    13467899999999999999   


Q ss_pred             --CHHHHHc
Q 013230          428 --SAKEAIF  434 (447)
Q Consensus       428 --sa~elL~  434 (447)
                        |++|+++
T Consensus       273 Rps~~ell~  281 (289)
T 3og7_A          273 RPSFPRILA  281 (289)
T ss_dssp             SCCHHHHHH
T ss_pred             CCCHHHHHH
Confidence              9999875

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.98  E-value=1.3e-32  Score=272.81  Aligned_cols=230  Identities=21%  Similarity=0.194  Sum_probs=184.3

Q ss_pred             CCcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCc
Q 013230          133 DPENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA  201 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~  201 (447)
                      +|++++.||+|+||.||+|+           .||+|++....       .....+.+.+|+.+++.++|        || 
T Consensus        48 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------p~-  111 (343)
T 1luf_A           48 NIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA-------SADMQADFQREAALMAEFDN--------PN-  111 (343)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC-------CHHHHHHHHHHHHHHHTCCC--------TT-
T ss_pred             HCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEecccc-------CHHHHHHHHHHHHHHHhCCC--------CC-
Confidence            35999999999999999996           38999886431       22345678999999999988        88 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------------
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------------  266 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------------  266 (447)
                         |+++++++.                              ..+.+|+||||+.+| +|.+++.               
T Consensus       112 ---iv~~~~~~~------------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~  157 (343)
T 1luf_A          112 ---IVKLLGVCA------------------------------VGKPMCLLFEYMAYG-DLNEFLRSMSPHTVCSLSHSDL  157 (343)
T ss_dssp             ---BCCEEEEEC------------------------------SSSSCEEEEECCTTC-BHHHHHHHTCC-----------
T ss_pred             ---EEEEEEEEc------------------------------cCCceEEEEecCCCC-cHHHHHHHhCcccccccccccc
Confidence               999999853                              256699999999988 9998862               


Q ss_pred             -------------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEe
Q 013230          267 -------------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTII  333 (447)
Q Consensus       267 -------------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~  333 (447)
                                   +++.+++.++.||+.||.|||+ .||+||||||+|||++.++                    .+||+
T Consensus       158 ~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~-~~ivH~Dlkp~NIl~~~~~--------------------~~kl~  216 (343)
T 1luf_A          158 STRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE-RKFVHRDLATRNCLVGENM--------------------VVKIA  216 (343)
T ss_dssp             -----------CCCCHHHHHHHHHHHHHHHHHHHH-TTCCCSCCSGGGEEECGGG--------------------CEEEC
T ss_pred             cccccccccCCCCCCHHHHHHHHHHHHHHHHHHHh-CCeecCCCCcceEEECCCC--------------------eEEEe
Confidence                         6788999999999999999999 9999999999999999887                    79999


Q ss_pred             eccceeecCCC-------CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccC
Q 013230          334 DFTLSRINTGE-------DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKT  405 (447)
Q Consensus       334 DFGla~~~~~~-------g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~  405 (447)
                      |||+++.....       .......|++||.+.+...+.+.|+|+ +|.+.+++++ +..|+............. ....
T Consensus       217 Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~s-lG~il~el~t~g~~p~~~~~~~~~~~~~~-~~~~  294 (343)
T 1luf_A          217 DFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWA-YGVVLWEIFSYGLQPYYGMAHEEVIYYVR-DGNI  294 (343)
T ss_dssp             CCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHH-HHHHHHHHHTTTCCTTTTSCHHHHHHHHH-TTCC
T ss_pred             ecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHH-HHHHHHHHHhcCCCcCCCCChHHHHHHHh-CCCc
Confidence            99999764322       111223489999988777777889999 9999999998 888887654433333332 2233


Q ss_pred             CCCCccchHHHHHHHHHhcccc-----CHHHHHcC
Q 013230          406 FDRSSKDERDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       406 ~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      .+.+..+++++.+||++||..|     |+.+++++
T Consensus       295 ~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~  329 (343)
T 1luf_A          295 LACPENCPLELYNLMRLCWSKLPADRPSFCSIHRI  329 (343)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHH
Confidence            3445678999999999999999     89988764

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.98  E-value=1.6e-32  Score=265.80  Aligned_cols=232  Identities=20%  Similarity=0.179  Sum_probs=180.2

Q ss_pred             CCcceEEeccccceEEEEec---------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccc
Q 013230          133 DPENIVKVGEGTFGEAFLAG---------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACT  203 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~---------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~  203 (447)
                      +|++++.||+|+||.||+|+         .||+|++.....     ......+.+.+|+.+++.++|        ||   
T Consensus        19 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~-----~~~~~~~~~~~e~~~l~~l~h--------~~---   82 (291)
T 1u46_A           19 DLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVL-----SQPEAMDDFIREVNAMHSLDH--------RN---   82 (291)
T ss_dssp             GEEEEEECC----CCCEEEEEECTTSCEEEEEEEC-------------CHHHHHHHHHHHHHHHCCC--------TT---
T ss_pred             HeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCcc-----CCHHHHHHHHHHHHHHHhCCC--------CC---
Confidence            34999999999999999996         279998764421     123345778999999999988        88   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHH
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQ  278 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Q  278 (447)
                       |+++++++.                               ....++||||+.+| +|.+++.     +++..++.++.|
T Consensus        83 -i~~~~~~~~-------------------------------~~~~~~v~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~  129 (291)
T 1u46_A           83 -LIRLYGVVL-------------------------------TPPMKMVTELAPLG-SLLDRLRKHQGHFLLGTLSRYAVQ  129 (291)
T ss_dssp             -BCCEEEEEC-------------------------------SSSCEEEEECCTTC-BHHHHHHHHGGGSCHHHHHHHHHH
T ss_pred             -cccEEEEEc-------------------------------cCCceeeEecccCC-CHHHHHHhccCCcCHHHHHHHHHH
Confidence             999999853                               23489999999988 9988875     899999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE--------EEe
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF--------FLD  350 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i--------~~~  350 (447)
                      |+.||.|||+ .||+||||||+|||++.++                    .+||+|||+++........        ...
T Consensus       130 i~~~l~~lH~-~~i~H~dikp~Nili~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~  188 (291)
T 1u46_A          130 VAEGMGYLES-KRFIHRDLAARNLLLATRD--------------------LVKIGDFGLMRALPQNDDHYVMQEHRKVPF  188 (291)
T ss_dssp             HHHHHHHHHH-TTEECSCCCGGGEEEEETT--------------------EEEECCCTTCEECCC-CCEEEC-----CCG
T ss_pred             HHHHHHHHHh-CCcccCCCchheEEEcCCC--------------------CEEEccccccccccccccchhhhccCCCCc
Confidence            9999999999 9999999999999999887                    7999999999876544211        111


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc--
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d--  427 (447)
                      .|++||.+.+...+.+.|+|+ +|.+.++++. +..|+..................++.+..+++++++||.+||..|  
T Consensus       189 ~y~aPE~~~~~~~~~~~Di~s-lG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~  267 (291)
T 1u46_A          189 AWCAPESLKTRTFSHASDTWM-FGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPE  267 (291)
T ss_dssp             GGCCHHHHHHCEEEHHHHHHH-HHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             eeeCchhhcCCCCCchhhHHH-HHHHHHHHHhCCCCCcccCCHHHHHHHHHccCCCCCCCcCcCHHHHHHHHHHccCCcc
Confidence            388999987766666779999 9999999998 888887655444444444334455556778999999999999999  


Q ss_pred             ---CHHHHHcC
Q 013230          428 ---SAKEAIFD  435 (447)
Q Consensus       428 ---sa~elL~H  435 (447)
                         |+.+++++
T Consensus       268 ~Rps~~~l~~~  278 (291)
T 1u46_A          268 DRPTFVALRDF  278 (291)
T ss_dssp             GSCCHHHHHHH
T ss_pred             cCcCHHHHHHH
Confidence               99998863

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.98  E-value=1.8e-32  Score=265.34  Aligned_cols=226  Identities=22%  Similarity=0.248  Sum_probs=184.1

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||.||+|.+      ||+|++....         ...+.+.+|+.+++.++|        ||    |++
T Consensus        15 ~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---------~~~~~~~~E~~~l~~l~h--------~~----i~~   73 (288)
T 3kfa_A           15 ITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT---------MEVEEFLKEAAVMKEIKH--------PN----LVQ   73 (288)
T ss_dssp             EEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS---------THHHHHHHHHHHHHHCCC--------TT----BCC
T ss_pred             eeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH---------HHHHHHHHHHHHHHhCCC--------CC----Eee
Confidence            49999999999999999973      9999886432         234678999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +++++.                              .++.+|+||||+.|| +|.+++.      +++..++.++.||+.
T Consensus        74 ~~~~~~------------------------------~~~~~~~v~e~~~~~-~L~~~~~~~~~~~~~~~~~~~i~~~i~~  122 (288)
T 3kfa_A           74 LLGVCT------------------------------REPPFYIITEFMTYG-NLLDYLRECNRQEVSAVVLLYMATQISS  122 (288)
T ss_dssp             EEEEEC------------------------------SSSSEEEEEECCTTE-EHHHHHHHCCTTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEc------------------------------cCCCEEEEEEcCCCC-cHHHHHHhcccCCccHhHHHHHHHHHHH
Confidence            999843                              256699999999988 9999885      899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------EEEEecCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------IFFLDLSQDP  355 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------~i~~~~~~~p  355 (447)
                      ||+|||+ .||+||||||+|||++.++                    .+||+|||+|+......      ......|++|
T Consensus       123 ~l~~lH~-~~i~H~dikp~Nil~~~~~--------------------~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aP  181 (288)
T 3kfa_A          123 AMEYLEK-KNFIHRDLAARNCLVGENH--------------------LVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP  181 (288)
T ss_dssp             HHHHHHH-HTCCCSCCSGGGEEECGGG--------------------CEEECCCCGGGTSCSSSSEEETTEEECGGGCCH
T ss_pred             HHHHHHH-CCccCCCCCcceEEEcCCC--------------------CEEEccCccceeccCCccccccCCccccCcCCh
Confidence            9999999 9999999999999999887                    79999999998765442      2233348999


Q ss_pred             CCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CH
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SA  429 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa  429 (447)
                      |.+.+...+...|+|+ +|.+.++++. +..|+........ ...+......+.+..+++++.+||++||..|     |+
T Consensus       182 E~~~~~~~~~~~Di~s-lG~il~~ll~~g~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~  259 (288)
T 3kfa_A          182 ESLAYNKFSIKSDVWA-FGVLLWEIATYGMSPYPGIDLSQV-YELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSF  259 (288)
T ss_dssp             HHHHHCCCCHHHHHHH-HHHHHHHHHTTSCCSSTTCCGGGH-HHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             hhhccCCCCchhhHHH-HHHHHHHHHhCCCCCCCCCCHHHH-HHHHhccCCCCCCCCCCHHHHHHHHHHhCCChhhCcCH
Confidence            9998877777889999 9999999998 7777754322222 2222223344556678999999999999999     89


Q ss_pred             HHHHc
Q 013230          430 KEAIF  434 (447)
Q Consensus       430 ~elL~  434 (447)
                      +|+++
T Consensus       260 ~~~~~  264 (288)
T 3kfa_A          260 AEIHQ  264 (288)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98875

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.98  E-value=2.3e-32  Score=266.97  Aligned_cols=227  Identities=18%  Similarity=0.188  Sum_probs=170.6

Q ss_pred             hhhhhccCCCcce-EEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHH-HhccccccCCC
Q 013230          125 LDLFSKYSDPENI-VKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLS-WTLNHLRRNEG  196 (447)
Q Consensus       125 ~~~~~~y~~~~~~-~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il-~~L~h~~~~~~  196 (447)
                      ..+.++|   .++ +.||+|+||.||+|.+      ||+|++...             ....+|+.++ +.++|      
T Consensus        13 ~~~~~~y---~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-------------~~~~~e~~~~~~~~~h------   70 (299)
T 3m2w_A           13 NAIIDDY---KVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-------------PKARREVELHWRASQC------   70 (299)
T ss_dssp             SCGGGTE---EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-------------HHHHHHHHHHHHHTTS------
T ss_pred             cccccch---hhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc-------------HHHHHHHHHHHHhccC------
Confidence            3455666   777 7799999999999974      999998622             3567899988 44455      


Q ss_pred             CCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHH
Q 013230          197 DTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNIN  270 (447)
Q Consensus       197 ~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~  270 (447)
                        ||    |+++++++....                          .....+|+||||+.|| +|.+++.      +++.
T Consensus        71 --~~----i~~~~~~~~~~~--------------------------~~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~  117 (299)
T 3m2w_A           71 --PH----IVRIVDVYENLY--------------------------AGRKCLLIVMECLDGG-ELFSRIQDRGDQAFTER  117 (299)
T ss_dssp             --TT----BCCEEEEEEEEE--------------------------TTEEEEEEEECCCCSC-BHHHHHHHCTTCCCBHH
T ss_pred             --CC----chhHHhhhhhhc--------------------------CCCceEEEEEeecCCC-cHHHHHHhccCCCCCHH
Confidence              66    999999865411                          1135689999999988 9999875      8999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEEEEe
Q 013230          271 EARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLD  350 (447)
Q Consensus       271 ~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i~~~  350 (447)
                      .++.++.||+.||+|||+ .||+||||||+|||++..+.                 ...+||+|||+|+....       
T Consensus       118 ~~~~i~~qi~~~l~~lH~-~~i~H~dlkp~Nil~~~~~~-----------------~~~~kl~Dfg~a~~~~~-------  172 (299)
T 3m2w_A          118 EASEIMKSIGEAIQYLHS-INIAHRDVKPENLLYTSKRP-----------------NAILKLTDFGFAKETTG-------  172 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TTEECCCCSGGGEEESSSST-----------------TCCEEECCCTTCEECTT-------
T ss_pred             HHHHHHHHHHHHHHHHHh-CCcccCCCCHHHEEEecCCC-----------------CCcEEEecccccccccc-------
Confidence            999999999999999999 99999999999999998420                 01799999999876442       


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHH--hhccCCCCC----ccchHHHHHHHHHhc
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDML--LLKKTFDRS----SKDERDLRSLKKRLD  424 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l--~~~~~~~~~----~~~s~~l~dLl~~mL  424 (447)
                                ...+.+.|+|+ +|.+.+++++|..|+.............  .....++.+    ..+++++++||.+||
T Consensus       173 ----------~~~~~~~Diws-lG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  241 (299)
T 3m2w_A          173 ----------EKYDKSCDMWS-LGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLL  241 (299)
T ss_dssp             ----------CGGGGHHHHHH-HHHHHHHHHHSSCSCCC-------CCSCCSSCTTCCSSCHHHHTTSCHHHHHHHHHHT
T ss_pred             ----------ccCCchhhHHH-HHHHHHHHHHCCCCCCCCcchhhhHHHHHHHhhccccCCchhcccCCHHHHHHHHHHc
Confidence                      23455679999 9999999999999986542211110000  000111111    357899999999999


Q ss_pred             ccc-----CHHHHHcCCCCCCCC
Q 013230          425 KYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       425 ~~d-----sa~elL~HPff~~~~  442 (447)
                      ..|     |++|+|+||||++..
T Consensus       242 ~~dP~~Rps~~e~l~hp~~~~~~  264 (299)
T 3m2w_A          242 KTEPTQRMTITEFMNHPWIMQST  264 (299)
T ss_dssp             CSSTTTSCCHHHHHTSHHHHTGG
T ss_pred             ccChhhCCCHHHHhcChhhcccc
Confidence            999     999999999997653

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.98  E-value=3.3e-32  Score=263.50  Aligned_cols=239  Identities=18%  Similarity=0.192  Sum_probs=180.3

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||+|+||.||+|++      ||+|++....... ........+.+.+|+.+++.++|        ||    |+
T Consensus        20 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~~~~~~E~~~l~~l~h--------~~----i~   86 (287)
T 4f0f_A           20 EIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEG-ETEMIEKFQEFQREVFIMSNLNH--------PN----IV   86 (287)
T ss_dssp             TEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTC-CHHHHCCSHHHHHHHHHHTTCCC--------TT----BC
T ss_pred             cceehhccccCCceeEEEEEEcCCceEEEEEEeecccccc-chhHHHHHHHHHHHHHHHHhCCC--------CC----ch
Confidence            359999999999999999974      9999887543210 00111223678999999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      ++++++                                .+..++||||+.+| +|.+++.     +++..++.++.||+.
T Consensus        87 ~~~~~~--------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~l~~  133 (287)
T 4f0f_A           87 KLYGLM--------------------------------HNPPRMVMEFVPCG-DLYHRLLDKAHPIKWSVKLRLMLDIAL  133 (287)
T ss_dssp             CEEEEE--------------------------------TTTTEEEEECCTTC-BHHHHHHCTTSCCCHHHHHHHHHHHHH
T ss_pred             hhheee--------------------------------cCCCeEEEEecCCC-CHHHHHhcccCCccHHHHHHHHHHHHH
Confidence            999984                                12247999999988 9988764     899999999999999


Q ss_pred             HHHHHHHhCC--eeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC--EEEEecCCCCCC
Q 013230          282 GLAVAEAAYE--FEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED--IFFLDLSQDPEL  357 (447)
Q Consensus       282 gL~ylH~~~~--iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g--~i~~~~~~~pel  357 (447)
                      ||+|||+ .|  |+||||||+|||++.++.               .....+||+|||+|+......  ......|++||.
T Consensus       134 ~l~~lH~-~~~~ivH~dikp~Nil~~~~~~---------------~~~~~~kl~Dfg~~~~~~~~~~~~~g~~~y~aPE~  197 (287)
T 4f0f_A          134 GIEYMQN-QNPPIVHRDLRSPNIFLQSLDE---------------NAPVCAKVADFGLSQQSVHSVSGLLGNFQWMAPET  197 (287)
T ss_dssp             HHHHHHT-SSSCCBCSCCSGGGEEESCCCT---------------TCSCCEEECCCTTCBCCSSCEECCCCCCTTSCGGG
T ss_pred             HHHHHHh-CCCCeecCCCCcceEEEeccCC---------------CCceeEEeCCCCccccccccccccCCCccccCchh
Confidence            9999999 99  999999999999987751               011249999999998655432  223445899999


Q ss_pred             CCCC--CCCchHHHHHhhccCCcccccCCCCCChhHH--HHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C
Q 013230          358 FSGP--KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLW--LVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S  428 (447)
Q Consensus       358 f~g~--~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~--~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s  428 (447)
                      +.+.  ....+.|||+ +|.+.++++.+..|+.....  ................+...++++++||++||..|     |
T Consensus       198 ~~~~~~~~~~~~Di~s-lG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps  276 (287)
T 4f0f_A          198 IGAEEESYTEKADTYS-FAMILYTILTGEGPFDEYSYGKIKFINMIREEGLRPTIPEDCPPRLRNVIELCWSGDPKKRPH  276 (287)
T ss_dssp             SSCSSCEECHHHHHHH-HHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCC
T ss_pred             hccCCCCcCchhhHHH-HHHHHHHHHcCCCCCccccccHHHHHHHHhccCCCCCCCcccCHHHHHHHHHHhcCChhhCcC
Confidence            8443  3345669999 99999999999998864321  11122222222233445678999999999999999     9


Q ss_pred             HHHHHc
Q 013230          429 AKEAIF  434 (447)
Q Consensus       429 a~elL~  434 (447)
                      ++|+++
T Consensus       277 ~~~ll~  282 (287)
T 4f0f_A          277 FSYIVK  282 (287)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.98  E-value=2.6e-32  Score=267.61  Aligned_cols=225  Identities=19%  Similarity=0.230  Sum_probs=178.0

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.++||+|+||.||+|.+      ||+|++...        .....+.+.+|+.+++.++|        ||    |+
T Consensus        11 ~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~--------~~~~~~~~~~E~~~l~~l~h--------p~----iv   70 (310)
T 3s95_A           11 DLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRF--------DEETQRTFLKEVKVMRCLEH--------PN----VL   70 (310)
T ss_dssp             GEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCC--------CHHHHHHHHHHHHHHTTCCC--------TT----BC
T ss_pred             HeeccceecCCCCEEEEEEEECCCCcEEEEEEeccC--------CHHHHHHHHHHHHHHHhCCC--------cC----cc
Confidence            349999999999999999974      899987432        23345678999999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      ++++++..                              ++..|+||||+.+| +|.+++.     +++..+..++.||+.
T Consensus        71 ~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~i~~qi~~  119 (310)
T 3s95_A           71 KFIGVLYK------------------------------DKRLNFITEYIKGG-TLRGIIKSMDSQYPWSQRVSFAKDIAS  119 (310)
T ss_dssp             CEEEEEEE------------------------------TTEEEEEEECCTTC-BHHHHHHHCCTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEEec------------------------------CCeeEEEEEecCCC-cHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence            99999654                              56699999999988 9999886     899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE---------------
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI---------------  346 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~---------------  346 (447)
                      ||+|||+ .||+||||||+|||++.++                    .+||+|||+|+.......               
T Consensus       120 al~~lH~-~~ivH~dlkp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~  178 (310)
T 3s95_A          120 GMAYLHS-MNIIHRDLNSHNCLVRENK--------------------NVVVADFGLARLMVDEKTQPEGLRSLKKPDRKK  178 (310)
T ss_dssp             HHHHHHH-TTEECSCCSTTSEEECTTS--------------------CEEECCCTTCEECC-------------------
T ss_pred             HHHHHHh-CCccCCCCCcCeEEECCCC--------------------CEEEeecccceeccccccccccccccccccccc
Confidence            9999999 9999999999999999887                    799999999987644321               


Q ss_pred             ----EEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHH-----HHHHHHHHhhccCCCCCccchHHHH
Q 013230          347 ----FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLW-----LVYLVDMLLLKKTFDRSSKDERDLR  417 (447)
Q Consensus       347 ----i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~-----~~~~~~~l~~~~~~~~~~~~s~~l~  417 (447)
                          .....|++||.+.+...+.+.|||+ +|.+.++++.+..|+.....     .......+  ...  .+...++++.
T Consensus       179 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~s-lG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~l~  253 (310)
T 3s95_A          179 RYTVVGNPYWMAPEMINGRSYDEKVDVFS-FGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFL--DRY--CPPNCPPSFF  253 (310)
T ss_dssp             -CCCCSCGGGCCHHHHTTCCCCTHHHHHH-HHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHH--HHT--CCTTCCTTHH
T ss_pred             ccccCCCcceeCHHHhcCCCCCcHHHHHH-HHHHHHHHhcCCCCCcchhhhHHHHhhhhhccc--ccc--CCCCCCHHHH
Confidence                1223389999999988888889999 99999999988766543100     00001111  011  1245677899


Q ss_pred             HHHHHhcccc-----CHHHHHc
Q 013230          418 SLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       418 dLl~~mL~~d-----sa~elL~  434 (447)
                      +||.+||..|     |+.++++
T Consensus       254 ~li~~~l~~dP~~Rps~~~l~~  275 (310)
T 3s95_A          254 PITVRCCDLDPEKRPSFVKLEH  275 (310)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHccCChhhCcCHHHHHH
Confidence            9999999999     8888875

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.98  E-value=8.5e-33  Score=273.25  Aligned_cols=232  Identities=20%  Similarity=0.155  Sum_probs=176.4

Q ss_pred             CCcceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          133 DPENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      +|+++++||+|+||.||+|+    .||+|++....         .......+|+.+++.++|        ||    |+++
T Consensus        25 ~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~---------~~~~~~~~E~~~l~~l~h--------pn----iv~~   83 (322)
T 3soc_A           25 PLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQD---------KQSWQNEYEVYSLPGMKH--------EN----ILQF   83 (322)
T ss_dssp             EEEEEEEEECSTTCEEEEEEETTEEEEEEEECGGG---------HHHHHHHHHHHTSTTCCC--------TT----BCCE
T ss_pred             hchhhheecccCceEEEEEEECCCEEEEEEeecCc---------hHHHHHHHHHHHHhcCCC--------CC----chhh
Confidence            35999999999999999997    39999986431         223445678988999988        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLAV  285 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~y  285 (447)
                      ++++...+.                          ....+|+||||+.+| +|.+++.   +++..++.++.||+.||+|
T Consensus        84 ~~~~~~~~~--------------------------~~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~i~~qi~~al~~  136 (322)
T 3soc_A           84 IGAEKRGTS--------------------------VDVDLWLITAFHEKG-SLSDFLKANVVSWNELCHIAETMARGLAY  136 (322)
T ss_dssp             EEEEEEECS--------------------------SSEEEEEEEECCTTC-BHHHHHHHCCBCHHHHHHHHHHHHHHHHH
T ss_pred             cceeccCCC--------------------------CCceEEEEEecCCCC-CHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            999765321                          124589999999988 9999987   9999999999999999999


Q ss_pred             HHHhC----------CeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-------CEEE
Q 013230          286 AEAAY----------EFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-------DIFF  348 (447)
Q Consensus       286 lH~~~----------~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-------g~i~  348 (447)
                      ||+ .          ||+||||||+|||++.++                    .+||+|||+|+.....       +...
T Consensus       137 LH~-~~~~l~~~~~~~ivH~Dlkp~Nill~~~~--------------------~~kL~DFg~a~~~~~~~~~~~~~~~~g  195 (322)
T 3soc_A          137 LHE-DIPGLKDGHKPAISHRDIKSKNVLLKNNL--------------------TACIADFGLALKFEAGKSAGDTHGQVG  195 (322)
T ss_dssp             HTC-CEEEETTEEECEEECSCCSGGGEEECTTC--------------------CEEECCCTTCEEECTTSCCCCCTTCCC
T ss_pred             HHh-hccccccccCCCEEeCCCChHhEEECCCC--------------------eEEEccCCcccccccccCccccccCcc
Confidence            999 8          999999999999999887                    7999999999765432       2234


Q ss_pred             EecCCCCCCCCCCCC-----CchHHHHHhhccCCcccccCCCCCChh------H---------HHHHHHHHHhhccCCCC
Q 013230          349 LDLSQDPELFSGPKG-----DKQFDTYRKMKKVTEDQWEGSFPKTNV------L---------WLVYLVDMLLLKKTFDR  408 (447)
Q Consensus       349 ~~~~~~pelf~g~~~-----~~~~di~s~lg~~~~~~~~~~~p~~~~------~---------~~~~~~~~l~~~~~~~~  408 (447)
                      ...|++||++.+...     ..+.|||+ +|.+.++++++..|+...      .         ...............+.
T Consensus       196 t~~y~aPE~~~~~~~~~~~~~~~~Diws-lG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (322)
T 3soc_A          196 TRRYMAPEVLEGAINFQRDAFLRIDMYA-MGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPV  274 (322)
T ss_dssp             CGGGCCHHHHTTCCCCCHHHHHHHHHHH-HHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCC
T ss_pred             CccccCHhhcccccccCcCCCccchhHH-HHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhhhhhhcccCCCC
Confidence            456899999987432     23449999 999999999997776421      0         01112222221212221


Q ss_pred             ------CccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          409 ------SSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       409 ------~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                            ....++++++||++||..|     |+.|+++
T Consensus       275 ~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~  311 (322)
T 3soc_A          275 LRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGE  311 (322)
T ss_dssp             CCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ccccccccchHHHHHHHHHHHccCChhhCcCHHHHHH
Confidence                  1134567999999999999     9999875

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.98  E-value=3.8e-32  Score=269.63  Aligned_cols=229  Identities=19%  Similarity=0.261  Sum_probs=183.1

Q ss_pred             CcceEEeccccceEEEEece-------------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCC
Q 013230          134 PENIVKVGEGTFGEAFLAGN-------------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTL  199 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~-------------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~  199 (447)
                      |++.+.||+|+||.||+|++             ||+|++....       .......+.+|+.+++.+ +|        |
T Consensus        37 y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~~~E~~~l~~l~~h--------p  101 (334)
T 2pvf_A           37 LTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA-------TEKDLSDLVSEMEMMKMIGKH--------K  101 (334)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTC-------CHHHHHHHHHHHHHHHHHCCC--------T
T ss_pred             eEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCC-------cHHHHHHHHHHHHHHHHhhcC--------C
Confidence            49999999999999999962             8999886432       223456789999999999 67        7


Q ss_pred             CcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------------
Q 013230          200 NACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------------  266 (447)
Q Consensus       200 n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------------  266 (447)
                      |    |+++++++.                              ..+.+|+||||+.+| +|.+++.             
T Consensus       102 ~----iv~~~~~~~------------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~  146 (334)
T 2pvf_A          102 N----IINLLGACT------------------------------QDGPLYVIVEYASKG-NLREYLRARRPPGMEYSYDI  146 (334)
T ss_dssp             T----BCCEEEEEC------------------------------SSSCCEEEEECCTTC-BHHHHHHTTSCTTCCSCC--
T ss_pred             C----EeeEEEEEc------------------------------cCCceEEEEECCCCC-cHHHHHHHhccccccccccc
Confidence            7    999999853                              256799999999988 9998874             


Q ss_pred             -------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeecccee
Q 013230          267 -------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSR  339 (447)
Q Consensus       267 -------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~  339 (447)
                             +++..++.++.||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+++
T Consensus       147 ~~~~~~~~~~~~~~~i~~qi~~aL~~LH~-~~ivH~Dlkp~NIll~~~~--------------------~~kL~Dfg~~~  205 (334)
T 2pvf_A          147 NRVPEEQMTFKDLVSCTYQLARGMEYLAS-QKCIHRDLAARNVLVTENN--------------------VMKIADFGLAR  205 (334)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHHHH-TTEECSCCSGGGEEECTTC--------------------CEEECCCTTCE
T ss_pred             cccccccCCHHHHHHHHHHHHHHHHHHHh-CCeeCCCCccceEEEcCCC--------------------CEEEccccccc
Confidence                   6888999999999999999999 9999999999999999887                    79999999998


Q ss_pred             ecCCCCE-------EEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCcc
Q 013230          340 INTGEDI-------FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSK  411 (447)
Q Consensus       340 ~~~~~g~-------i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~  411 (447)
                      .......       .....|++||.+.+.....+.|||+ +|.+.+++++ +..|+......... ..+......+.+..
T Consensus       206 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s-lG~il~ellt~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~  283 (334)
T 2pvf_A          206 DINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWS-FGVLMWEIFTLGGSPYPGIPVEELF-KLLKEGHRMDKPAN  283 (334)
T ss_dssp             ECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHH-HHHHHHHHHTTSCCSSTTCCHHHHH-HHHHHTCCCCCCTT
T ss_pred             cccccccccccCCCCcccceeChHHhcCCCcChHHHHHH-HHHHHHHHHhCCCCCcCcCCHHHHH-HHHhcCCCCCCCcc
Confidence            7654321       1123388999887766677779999 9999999998 88888654333322 22222333444567


Q ss_pred             chHHHHHHHHHhcccc-----CHHHHHcC
Q 013230          412 DERDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       412 ~s~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      .+.++++||++||..|     |+.|++++
T Consensus       284 ~~~~l~~li~~~l~~dp~~Rps~~ell~~  312 (334)
T 2pvf_A          284 CTNELYMMMRDCWHAVPSQRPTFKQLVED  312 (334)
T ss_dssp             CCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            8999999999999999     89988764

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.98  E-value=2.1e-32  Score=283.62  Aligned_cols=225  Identities=21%  Similarity=0.230  Sum_probs=184.7

Q ss_pred             CcceEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          134 PENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      |++.++||+|+||.||+|+     .||+|++....         ...+.+.+|+.+|+.|+|        ||    ||++
T Consensus       190 ~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~---------~~~~~~~~E~~~l~~l~h--------~~----iv~l  248 (454)
T 1qcf_A          190 LKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS---------MSVEAFLAEANVMKTLQH--------DK----LVKL  248 (454)
T ss_dssp             EEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS---------BCHHHHHHHHHHHTTCCC--------TT----BCCE
T ss_pred             eEEEEEcccCCceEEEEEEECCccEEEEEEecCCC---------ccHHHHHHHHHHHhhCCC--------CC----EeeE
Confidence            4999999999999999997     39999987432         235778999999999998        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAG  282 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~g  282 (447)
                      ++++.                               .+.+|+||||+.+| +|.+++.      +++..+..++.||+.|
T Consensus       249 ~~~~~-------------------------------~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~~~~~qi~~~  296 (454)
T 1qcf_A          249 HAVVT-------------------------------KEPIYIITEFMAKG-SLLDFLKSDEGSKQPLPKLIDFSAQIAEG  296 (454)
T ss_dssp             EEEEC-------------------------------SSSCEEEECCCTTC-BHHHHHHSHHHHTCCHHHHHHHHHHHHHH
T ss_pred             EEEEe-------------------------------CCccEEEEeecCCC-cHHHHHHhccCCCCCHHHHHHHHHHHHHH
Confidence            98842                               34589999999988 9999875      8889999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------CEEEEecCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------DIFFLDLSQDPE  356 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g~i~~~~~~~pe  356 (447)
                      |+|||+ +||+||||||+|||++.++                    .+||+|||+|+.....      +......|++||
T Consensus       297 l~~LH~-~~ivHrDlkp~Nill~~~~--------------------~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE  355 (454)
T 1qcf_A          297 MAFIEQ-RNYIHRDLRAANILVSASL--------------------VCKIADFGLARVIEDNEYTAREGAKFPIKWTAPE  355 (454)
T ss_dssp             HHHHHH-TTCCCSSCSGGGEEECTTC--------------------CEEECSTTGGGGBCCHHHHTTCSSSSCGGGSCHH
T ss_pred             HHHHHh-CCccCCCCCHHHEEECCCC--------------------cEEEeeCCCceEcCCCceeccCCCcccccccCHH
Confidence            999999 9999999999999999887                    7999999999875432      222223489999


Q ss_pred             CCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      .+.+...+.+.|+|+ +|++.+++++ |..|+........... +......+.+...++++.+||.+||..|     |++
T Consensus       356 ~~~~~~~~~~~Dvws-lG~~l~el~t~g~~P~~~~~~~~~~~~-i~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~  433 (454)
T 1qcf_A          356 AINFGSFTIKSDVWS-FGILLMEIVTYGRIPYPGMSNPEVIRA-LERGYRMPRPENCPEELYNIMMRCWKNRPEERPTFE  433 (454)
T ss_dssp             HHHHCCCCHHHHHHH-HHHHHHHHHTTSCCSSTTCCHHHHHHH-HHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HhccCCCCcHHHHHh-HHHHHHHHHhCCCCCCCCCCHHHHHHH-HHcCCCCCCCCCCCHHHHHHHHHHccCChhHCcCHH
Confidence            998777777889999 9999999998 8888865433333322 2233455666778999999999999999     888


Q ss_pred             HHHc
Q 013230          431 EAIF  434 (447)
Q Consensus       431 elL~  434 (447)
                      ++++
T Consensus       434 ~i~~  437 (454)
T 1qcf_A          434 YIQS  437 (454)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.98  E-value=1.7e-32  Score=266.58  Aligned_cols=230  Identities=18%  Similarity=0.195  Sum_probs=180.5

Q ss_pred             CcceEEeccccceEEEEec---------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          134 PENIVKVGEGTFGEAFLAG---------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~---------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      |+..++||+|+||.||+|+         .+|+|++...       ......+.+.+|+.+++.++|        ||    
T Consensus        23 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~-------~~~~~~~~~~~E~~~l~~l~h--------~~----   83 (298)
T 3pls_A           23 THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRI-------TEMQQVEAFLREGLLMRGLNH--------PN----   83 (298)
T ss_dssp             EEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTC-------CSHHHHHHHHHHHHHHHTCCC--------TT----
T ss_pred             EccCceeccCCCceEEEEEEecCCCceeeeeeeecccc-------ccHHHHHHHHHHHHHHHhCCC--------CC----
Confidence            3677999999999999997         3888887632       222345678899999999988        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQV  279 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qi  279 (447)
                      |+++++++..                             .+...|+||||+.+| +|.+++.     +++..++.++.||
T Consensus        84 iv~~~~~~~~-----------------------------~~~~~~~v~e~~~~~-~L~~~~~~~~~~~~~~~~~~i~~qi  133 (298)
T 3pls_A           84 VLALIGIMLP-----------------------------PEGLPHVLLPYMCHG-DLLQFIRSPQRNPTVKDLISFGLQV  133 (298)
T ss_dssp             BCCCCEEECC-----------------------------SSSCCEEEECCCTTC-BHHHHHHCTTCCCBHHHHHHHHHHH
T ss_pred             eeeEEEEEec-----------------------------CCCCcEEEEecccCC-CHHHHHhccccCCCHHHHHHHHHHH
Confidence            9999998532                             123359999999988 9999876     8899999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC---------EEEEe
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED---------IFFLD  350 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g---------~i~~~  350 (447)
                      +.||+|||+ .||+||||||+|||++.++                    .+||+|||+|+......         .....
T Consensus       134 ~~~l~~LH~-~~i~H~dikp~Nili~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~  192 (298)
T 3pls_A          134 ARGMEYLAE-QKFVHRDLAARNCMLDESF--------------------TVKVADFGLARDILDREYYSVQQHRHARLPV  192 (298)
T ss_dssp             HHHHHHHHH-TTCCCSCCSGGGEEECTTC--------------------CEEECCTTSSCTTTTGGGGCSCCSSCTTCGG
T ss_pred             HHHHHHHHh-CCcccCCCCcceEEEcCCC--------------------cEEeCcCCCcccccCCcccccccCcCCCCCc
Confidence            999999999 9999999999999999887                    79999999997543321         11223


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc---
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN---  427 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d---  427 (447)
                      .|++||.+.+...+.+.|+|+ +|.+.++++++..|+............+......+.+...++++.+||++||..|   
T Consensus       193 ~y~aPE~~~~~~~~~~~Di~s-lG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~  271 (298)
T 3pls_A          193 KWTALESLQTYRFTTKSDVWS-FGVLLWELLTRGAPPYRHIDPFDLTHFLAQGRRLPQPEYCPDSLYQVMQQCWEADPAV  271 (298)
T ss_dssp             GGSCHHHHTTCCCCHHHHHHH-HHHHHHHHHHTSCCTTTTSCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             cccChhhhccCCCChhhchhh-HHHHHHHHhhCCCCCCccCCHHHHHHHhhcCCCCCCCccchHHHHHHHHHHccCChhh
Confidence            478999998877778889999 9999999999665543322222223333333445556778999999999999999   


Q ss_pred             --CHHHHHc
Q 013230          428 --SAKEAIF  434 (447)
Q Consensus       428 --sa~elL~  434 (447)
                        |+.++++
T Consensus       272 Rps~~~ll~  280 (298)
T 3pls_A          272 RPTFRVLVG  280 (298)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence              8888875

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=5.7e-32  Score=268.74  Aligned_cols=230  Identities=17%  Similarity=0.156  Sum_probs=180.6

Q ss_pred             CCcceEEeccccceEEEEece----------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN----------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~----------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      .|++.+.||+|+||.||+|+.          ||+|++....       .......+.+|+.+++.++|        ||  
T Consensus        45 ~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------~~--  107 (333)
T 1mqb_A           45 CVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY-------TEKQRVDFLGEAGIMGQFSH--------HN--  107 (333)
T ss_dssp             TEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC-------CHHHHHHHHHHHHHHHTCCC--------TT--
T ss_pred             HhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC-------CHHHHHHHHHHHHHHHhCCC--------CC--
Confidence            358899999999999999962          8999886432       22334578899999999988        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHH
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLV  277 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~  277 (447)
                        |+++++++.                              ..+.+|+||||+.+| +|.+++.     +++..++.++.
T Consensus       108 --iv~~~~~~~------------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~i~~  154 (333)
T 1mqb_A          108 --IIRLEGVIS------------------------------KYKPMMIITEYMENG-ALDKFLREKDGEFSVLQLVGMLR  154 (333)
T ss_dssp             --BCCEEEEEC------------------------------SSSSEEEEEECCTTE-EHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             --CCcEEEEEe------------------------------cCCCcEEEEeCCCCC-cHHHHHHhCCCCCCHHHHHHHHH
Confidence              999999842                              256799999999988 9999875     89999999999


Q ss_pred             HHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE--------EEE
Q 013230          278 QVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI--------FFL  349 (447)
Q Consensus       278 Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~--------i~~  349 (447)
                      ||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+++.......        ...
T Consensus       155 qi~~aL~~LH~-~~ivH~Dikp~NIl~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~  213 (333)
T 1mqb_A          155 GIAAGMKYLAN-MNYVHRDLAARNILVNSNL--------------------VCKVSDFGLSRVLEDDPEATYTTSGGKIP  213 (333)
T ss_dssp             HHHHHHHHHHH-TTCCCSCCCGGGEEECTTC--------------------CEEECCCCC-----------------CCC
T ss_pred             HHHHHHHHHHh-CCeeCCCCChheEEECCCC--------------------cEEECCCCcchhhccccccccccCCCCcc
Confidence            99999999999 9999999999999999887                    799999999987644311        111


Q ss_pred             ecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-
Q 013230          350 DLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-  427 (447)
Q Consensus       350 ~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-  427 (447)
                      ..|++||.+.+.....+.|+|+ +|.+.+++++ +..|+........... +......+.+...+.++.+||.+||..| 
T Consensus       214 ~~y~aPE~~~~~~~~~~~Di~s-lG~il~ellt~g~~pf~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~li~~~l~~~p  291 (333)
T 1mqb_A          214 IRWTAPEAISYRKFTSASDVWS-FGIVMWEVMTYGERPYWELSNHEVMKA-INDGFRLPTPMDCPSAIYQLMMQCWQQER  291 (333)
T ss_dssp             GGGSCHHHHHSCCCCHHHHHHH-HHHHHHHHHTTSCCTTTTCCHHHHHHH-HHTTCCCCCCTTCBHHHHHHHHHHTCSST
T ss_pred             ccccCchhcccCCCCchhhhHH-HHHHHHHHHcCCCCCcccCCHHHHHHH-HHCCCcCCCcccCCHHHHHHHHHHcCCCh
Confidence            2489999998877777889999 9999999988 8888865543333322 2223345556678999999999999999 


Q ss_pred             ----CHHHHHcC
Q 013230          428 ----SAKEAIFD  435 (447)
Q Consensus       428 ----sa~elL~H  435 (447)
                          |+.+++++
T Consensus       292 ~~Rps~~~l~~~  303 (333)
T 1mqb_A          292 ARRPKFADIVSI  303 (333)
T ss_dssp             TTSCCHHHHHHH
T ss_pred             hhCcCHHHHHHH
Confidence                88887653

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.97  E-value=2.6e-32  Score=265.58  Aligned_cols=229  Identities=18%  Similarity=0.217  Sum_probs=174.2

Q ss_pred             CcceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHh--ccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWT--LNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~--L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|+    .||+|++...           ......+|..++..  ++|        ||    |++
T Consensus        10 y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~-----------~~~~~~~e~~~~~~~~l~h--------~n----iv~   66 (301)
T 3q4u_A           10 ITLLECVGKGRYGEVWRGSWQGENVAVKIFSSR-----------DEKSWFRETELYNTVMLRH--------EN----ILG   66 (301)
T ss_dssp             CEEEEEEEECSSEEEEEEEETTEEEEEEEECGG-----------GHHHHHHHHHHHHHTCCCC--------TT----BCC
T ss_pred             EEEEEeeccCCCcEEEEEEECCEEEEEEEeccc-----------cchhhHHHHHHHHHhhccC--------cC----eee
Confidence            4999999999999999997    4999988632           22456677777776  666        77    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~  284 (447)
                      +++++.....                          ....+|+||||+.+| +|.+++.   +++..++.++.||+.||+
T Consensus        67 ~~~~~~~~~~--------------------------~~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~i~~~i~~~l~  119 (301)
T 3q4u_A           67 FIASDMTSRH--------------------------SSTQLWLITHYHEMG-SLYDYLQLTTLDTVSCLRIVLSIASGLA  119 (301)
T ss_dssp             EEEEEEEEET--------------------------TEEEEEEEECCCTTC-BHHHHHTTCCBCHHHHHHHHHHHHHHHH
T ss_pred             EEEeeccccC--------------------------CCceeEEehhhccCC-CHHHHHhhcccCHHHHHHHHHHHHHHHH
Confidence            9998654221                          135589999999988 9999987   899999999999999999


Q ss_pred             HHH--------HhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE---------E
Q 013230          285 VAE--------AAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI---------F  347 (447)
Q Consensus       285 ylH--------~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~---------i  347 (447)
                      |||        + .||+||||||+|||++.++                    .+||+|||+|+.......         .
T Consensus       120 ~lH~~~~~~~~~-~~ivH~Dlkp~Nill~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~~  178 (301)
T 3q4u_A          120 HLHIEIFGTQGK-PAIAHRDLKSKNILVKKNG--------------------QCCIADLGLAVMHSQSTNQLDVGNNPRV  178 (301)
T ss_dssp             HHHSCBCSTTCB-CEEECSCCCGGGEEECTTS--------------------CEEECCCTTCEEEETTTTEEECCCCCCC
T ss_pred             HHHHhhhhccCC-CCeecCCCChHhEEEcCCC--------------------CEEEeeCCCeeecccccccccccccccc
Confidence            999        8 9999999999999999887                    799999999986544321         2


Q ss_pred             EEecCCCCCCCCCCCCC------chHHHHHhhccCCcccccC----------CCCCChhH----HHHHHHHHHhhcc-CC
Q 013230          348 FLDLSQDPELFSGPKGD------KQFDTYRKMKKVTEDQWEG----------SFPKTNVL----WLVYLVDMLLLKK-TF  406 (447)
Q Consensus       348 ~~~~~~~pelf~g~~~~------~~~di~s~lg~~~~~~~~~----------~~p~~~~~----~~~~~~~~l~~~~-~~  406 (447)
                      ....|++||.+.+....      .+.|||+ +|.+.++++++          ..|+....    ............. ..
T Consensus       179 gt~~y~aPE~~~~~~~~~~~~~~~~~Dvws-lG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~  257 (301)
T 3q4u_A          179 GTKRYMAPEVLDETIQVDCFDSYKRVDIWA-FGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRP  257 (301)
T ss_dssp             CCGGGCCHHHHTTCCCTTCHHHHHHHHHHH-HHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCC
T ss_pred             cccceeChhhhcCcCCCCcccCCchhhHHH-HHHHHHHHHhhhcCccccccccccccccCCCCcchhhhhHHHhccCCCC
Confidence            33458999999875332      3569999 99999999988          66664321    1111222221111 11


Q ss_pred             CCC-----ccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          407 DRS-----SKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       407 ~~~-----~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      ..+     ...++++.+||++||..|     |++|+++
T Consensus       258 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~  295 (301)
T 3q4u_A          258 NIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKK  295 (301)
T ss_dssp             CCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             CCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHH
Confidence            111     235689999999999999     9999875

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.97  E-value=2.2e-32  Score=270.21  Aligned_cols=236  Identities=16%  Similarity=0.170  Sum_probs=164.7

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHH-HHHhccccccCCCCCCCcccce
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVV-LSWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~-il~~L~h~~~~~~~~~n~~~~i  205 (447)
                      +|++++.||+|+||.||+|.+      ||+|++....       .......+.+|+. +++.++|        ||    |
T Consensus        23 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-------~~~~~~~~~~e~~~~~~~~~h--------~n----i   83 (327)
T 3aln_A           23 DLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTV-------DEKEQKQLLMDLDVVMRSSDC--------PY----I   83 (327)
T ss_dssp             SEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCC-------CHHHHHHHHHHHHHHHSSCCC--------TT----B
T ss_pred             HhhehheeccCCCEEEEEEEEcCCCCEEEEEEeeccc-------CchHHHHHHHHHHHHHHcCCC--------Cc----E
Confidence            459999999999999999974      9999987542       1122344556665 6666766        77    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------CCHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------LNINEARSLL  276 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------l~~~~~~~i~  276 (447)
                      +++++++..                              ++..|+||||+. | +|.+++.         +++..++.++
T Consensus        84 v~~~~~~~~------------------------------~~~~~lv~e~~~-~-~l~~~~~~~~~~~~~~~~~~~~~~i~  131 (327)
T 3aln_A           84 VQFYGALFR------------------------------EGDCWICMELMS-T-SFDKFYKYVYSVLDDVIPEEILGKIT  131 (327)
T ss_dssp             CCEEEEEEC------------------------------SSEEEEEECCCS-E-EHHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred             eeeeeEEEe------------------------------CCceEEEEeecC-C-ChHHHHHHHHhhhcccCcHHHHHHHH
Confidence            999999653                              567999999998 4 6666543         7899999999


Q ss_pred             HHHHHHHHHHHHhC-CeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEec
Q 013230          277 VQVTAGLAVAEAAY-EFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDL  351 (447)
Q Consensus       277 ~Qil~gL~ylH~~~-~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~  351 (447)
                      .|++.||.|||+ . ||+||||||+|||++.++                    .+||+|||+++......    ......
T Consensus       132 ~~i~~~l~~lH~-~~~ivH~dlkp~NIll~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~gt~~  190 (327)
T 3aln_A          132 LATVKALNHLKE-NLKIIHRDIKPSNILLDRSG--------------------NIKLCDFGISGQLVDSIAKTRDAGCRP  190 (327)
T ss_dssp             HHHHHHHHHHHH-HHSCCCSCCCGGGEEEETTT--------------------EEEECCCSSSCC---------------
T ss_pred             HHHHHHHHHHhc-cCCEeECCCCHHHEEEcCCC--------------------CEEEccCCCceecccccccccCCCCcc
Confidence            999999999999 7 999999999999999887                    79999999998754431    123445


Q ss_pred             CCCCCCC----CCCCCCchHHHHHhhccCCcccccCCCCCChhHHH-HHHHHHHhhc-cCCCC--CccchHHHHHHHHHh
Q 013230          352 SQDPELF----SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWL-VYLVDMLLLK-KTFDR--SSKDERDLRSLKKRL  423 (447)
Q Consensus       352 ~~~pelf----~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~-~~~~~~l~~~-~~~~~--~~~~s~~l~dLl~~m  423 (447)
                      |++||.+    .+.....+.|||+ +|.+.++++.|..|+...... ..+....... ..++.  ....++++++||++|
T Consensus       191 y~aPE~~~~~~~~~~~~~~~Di~s-lG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  269 (327)
T 3aln_A          191 YMAPERIDPSASRQGYDVRSDVWS-LGITLYELATGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVNLC  269 (327)
T ss_dssp             ---------------CCSHHHHHH-HHHHHHHHHHSCCCSSCC-------CCCCCSCCCCCCCCSSCCCCHHHHHHHHHH
T ss_pred             ccCceeeccccCcCCCCchhhHHH-HHHHHHHHHHCCCCCCCcchHHHHHHHHhcCCCCCCCCcccccCCHHHHHHHHHH
Confidence            8999998    3445666779999 999999999999888653211 1111111100 11111  235789999999999


Q ss_pred             cccc-----CHHHHHcCCCCCCC
Q 013230          424 DKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       424 L~~d-----sa~elL~HPff~~~  441 (447)
                      |..|     |+.|+++||||.+.
T Consensus       270 l~~dp~~Rps~~ell~hp~~~~~  292 (327)
T 3aln_A          270 LTKDESKRPKYKELLKHPFILMY  292 (327)
T ss_dssp             TCSSGGGSCCHHHHTTSHHHHHH
T ss_pred             hhCChhhCcCHHHHHhChHHHHh
Confidence            9999     99999999999753

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=5.7e-32  Score=262.30  Aligned_cols=229  Identities=21%  Similarity=0.232  Sum_probs=184.3

Q ss_pred             CcceE-EeccccceEEEEec--------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          134 PENIV-KVGEGTFGEAFLAG--------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       134 ~~~~~-~LG~G~fG~V~~a~--------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      |.+++ .||+|+||.||+|.        .||+|++...       ......+.+.+|+.+++.++|        ||    
T Consensus        11 ~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~-------~~~~~~~~~~~E~~~l~~l~h--------~~----   71 (287)
T 1u59_A           11 LLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQG-------TEKADTEEMMREAQIMHQLDN--------PY----   71 (287)
T ss_dssp             EEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSS-------CCHHHHHHHHHHHHHHHHCCC--------TT----
T ss_pred             hhhhhccccccCceeEEEeEeccCCCcceEEEEecCCc-------cchhHHHHHHHHHHHHHhCCC--------CC----
Confidence            36666 99999999999985        2999988743       122345678999999999988        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQV  279 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qi  279 (447)
                      |+++++++.                               .+.+|+||||+.+| +|.+++.     +++..++.++.||
T Consensus        72 i~~~~~~~~-------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~qi  119 (287)
T 1u59_A           72 IVRLIGVCQ-------------------------------AEALMLVMEMAGGG-PLHKFLVGKREEIPVSNVAELLHQV  119 (287)
T ss_dssp             BCCEEEEEE-------------------------------SSSEEEEEECCTTE-EHHHHHTTCTTTSCHHHHHHHHHHH
T ss_pred             EeEEEEEec-------------------------------CCCcEEEEEeCCCC-CHHHHHHhCCccCCHHHHHHHHHHH
Confidence            999999852                               34589999999988 9999884     8999999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEEE--------Eec
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFF--------LDL  351 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i~--------~~~  351 (447)
                      +.||.|||+ .||+||||||+|||++.++                    .+||+|||+++.........        ...
T Consensus       120 ~~~l~~lH~-~~i~H~dlkp~Nili~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~  178 (287)
T 1u59_A          120 SMGMKYLEE-KNFVHRDLAARNVLLVNRH--------------------YAKISDFGLSKALGADDSYYTARSAGKWPLK  178 (287)
T ss_dssp             HHHHHHHHH-TTEECCCCSGGGEEEEETT--------------------EEEECCCTTCEECTTCSCEECCCCSSCCCGG
T ss_pred             HHHHHHHHH-CCEeeCCCchheEEEcCCC--------------------CEEECcccceeeeccCcceeecccccccccc
Confidence            999999999 9999999999999999887                    79999999998765432211        233


Q ss_pred             CCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc---
Q 013230          352 SQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN---  427 (447)
Q Consensus       352 ~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d---  427 (447)
                      |++||.+.+...+.+.|+|+ +|.+.+++++ +..|+........... +......+.+...++++++||++||..|   
T Consensus       179 y~aPE~~~~~~~~~~~Di~s-lG~il~ellt~g~~p~~~~~~~~~~~~-i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~  256 (287)
T 1u59_A          179 WYAPECINFRKFSSRSDVWS-YGVTMWEALSYGQKPYKKMKGPEVMAF-IEQGKRMECPPECPPELYALMSDCWIYKWED  256 (287)
T ss_dssp             GCCHHHHHHCEECHHHHHHH-HHHHHHHHHTTSCCTTTTCCTHHHHHH-HHTTCCCCCCTTCCHHHHHHHHHTTCSSGGG
T ss_pred             ccCHHHhccCCCCchhhHHH-HHHHHHHHHcCCCCCcccCCHHHHHHH-HhcCCcCCCCCCcCHHHHHHHHHHcCCChhh
Confidence            88999887766677779999 9999999998 8888865433332222 2222334445678999999999999999   


Q ss_pred             --CHHHHHcCC
Q 013230          428 --SAKEAIFDP  436 (447)
Q Consensus       428 --sa~elL~HP  436 (447)
                        |+.++++|.
T Consensus       257 Rps~~~l~~~l  267 (287)
T 1u59_A          257 RPDFLTVEQRM  267 (287)
T ss_dssp             SCCHHHHHHHH
T ss_pred             CcCHHHHHHHH
Confidence              999998764

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.97  E-value=4.4e-32  Score=262.10  Aligned_cols=228  Identities=21%  Similarity=0.226  Sum_probs=181.1

Q ss_pred             CcceEEeccccceEEEEec---------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          134 PENIVKVGEGTFGEAFLAG---------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~---------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      |++.+.||+|+||.||+|+         .||+|++....       .....+.+.+|+.+++.++|        ||    
T Consensus        14 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------~~----   74 (281)
T 3cc6_A           14 VVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDC-------TLDNKEKFMSEAVIMKNLDH--------PH----   74 (281)
T ss_dssp             EEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTS-------CHHHHHHHHHHHHHHHHHCC--------TT----
T ss_pred             eEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEeccccc-------CchHHHHHHHHHHHHHhCCC--------CC----
Confidence            4999999999999999996         28999876432       22344678999999999988        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQV  279 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qi  279 (447)
                      |+++++++.                               ++..|+||||+.+| +|.+++.     +++..++.++.||
T Consensus        75 i~~~~~~~~-------------------------------~~~~~~v~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~i  122 (281)
T 3cc6_A           75 IVKLIGIIE-------------------------------EEPTWIIMELYPYG-ELGHYLERNKNSLKVLTLVLYSLQI  122 (281)
T ss_dssp             BCCEEEEEC-------------------------------SSSCEEEEECCTTC-BHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             cceEEEEEc-------------------------------CCCCEEEEecCCCC-CHHHHHHhccccCCHHHHHHHHHHH
Confidence            999999842                               34579999999988 9999885     8999999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE------EEEecCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI------FFLDLSQ  353 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~------i~~~~~~  353 (447)
                      +.||+|||+ +||+||||||+|||++.++                    .+||+|||+++.......      .....|+
T Consensus       123 ~~~l~~lH~-~~i~H~dlkp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~  181 (281)
T 3cc6_A          123 CKAMAYLES-INCVHRDIAVRNILVASPE--------------------CVKLGDFGLSRYIEDEDYYKASVTRLPIKWM  181 (281)
T ss_dssp             HHHHHHHHH-TTCCCCCCSGGGEEEEETT--------------------EEEECCCCGGGCC---------CCCCCGGGC
T ss_pred             HHHHHHHHH-CCcccCCCccceEEECCCC--------------------cEEeCccCCCcccccccccccccCCCCccee
Confidence            999999999 9999999999999999987                    799999999987544321      1122488


Q ss_pred             CCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----
Q 013230          354 DPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----  427 (447)
Q Consensus       354 ~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----  427 (447)
                      +||.+.+...+...|||+ +|.+.+++++ +..|+......... ..+......+.+...++++.+||.+||..|     
T Consensus       182 aPE~~~~~~~~~~~Di~s-lG~il~~llt~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp  259 (281)
T 3cc6_A          182 SPESINFRRFTTASDVWM-FAVCMWEILSFGKQPFFWLENKDVI-GVLEKGDRLPKPDLCPPVLYTLMTRCWDYDPSDRP  259 (281)
T ss_dssp             CHHHHHHCCCCHHHHHHH-HHHHHHHHHTTTCCTTTTSCGGGHH-HHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             CchhhccCCCCchhccHH-HHHHHHHHHhCCCCCcccCChHHHH-HHHhcCCCCCCCCCCCHHHHHHHHHHccCCchhCc
Confidence            999988777777789999 9999999998 88888533222211 222223345556678999999999999999     


Q ss_pred             CHHHHHcC
Q 013230          428 SAKEAIFD  435 (447)
Q Consensus       428 sa~elL~H  435 (447)
                      |+.|++++
T Consensus       260 s~~ell~~  267 (281)
T 3cc6_A          260 RFTELVCS  267 (281)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            99998864

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.97  E-value=5.5e-32  Score=265.74  Aligned_cols=237  Identities=20%  Similarity=0.184  Sum_probs=177.3

Q ss_pred             hhhhhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCC
Q 013230          124 LLDLFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGD  197 (447)
Q Consensus       124 ~~~~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~  197 (447)
                      ....+++|   ++.+.||+|+||.||+|++      ||+|++.....     ......+.+.+|+.+++.++|       
T Consensus        29 ~~~~~~~y---~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~~~~~e~~~l~~l~h-------   93 (309)
T 2h34_A           29 EGTQFGPY---RLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLS-----SDPVFRTRMQREARTAGRLQE-------   93 (309)
T ss_dssp             -----CCE---EEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGG-----GSHHHHHHHHHHHHHHTTCCC-------
T ss_pred             CCcEeccE---EEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccc-----cCHHHHHHHHHHHHHHhhcCC-------
Confidence            33445555   9999999999999999973      99998864321     222334678899999999988       


Q ss_pred             CCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHH
Q 013230          198 TLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEAR  273 (447)
Q Consensus       198 ~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~  273 (447)
                       ||    |+++++++..                              ++.+|+||||+.|| +|.+++.    +++..++
T Consensus        94 -p~----iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~  137 (309)
T 2h34_A           94 -PH----VVPIHDFGEI------------------------------DGQLYVDMRLINGV-DLAAMLRRQGPLAPPRAV  137 (309)
T ss_dssp             -TT----BCCEEEEEEE------------------------------TTEEEEEEECCCCE-EHHHHHHHHCSCCHHHHH
T ss_pred             -CC----eeEEEEEEee------------------------------CCeEEEEEEecCCC-CHHHHHHhcCCCCHHHHH
Confidence             88    9999999654                              56799999999987 9999886    8999999


Q ss_pred             HHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------EE
Q 013230          274 SLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------IF  347 (447)
Q Consensus       274 ~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------~i  347 (447)
                      .++.||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+++......      ..
T Consensus       138 ~i~~qi~~~l~~lH~-~~i~H~dlkp~NIl~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~  196 (309)
T 2h34_A          138 AIVRQIGSALDAAHA-AGATHRDVKPENILVSADD--------------------FAYLVDFGIASATTDEKLTQLGNTV  196 (309)
T ss_dssp             HHHHHHHHHHHHHHH-TTCCCSCCCGGGEEECTTS--------------------CEEECSCCC----------------
T ss_pred             HHHHHHHHHHHHHHH-CcCCcCCCChHHEEEcCCC--------------------CEEEecCccCccccccccccccccC
Confidence            999999999999999 9999999999999999887                    79999999998764431      12


Q ss_pred             EEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCC--CCCccchHHHHHHHHHhcc
Q 013230          348 FLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTF--DRSSKDERDLRSLKKRLDK  425 (447)
Q Consensus       348 ~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~--~~~~~~s~~l~dLl~~mL~  425 (447)
                      ....|++||.+.+.....+.|+|+ +|.+.++++++..|+....... +...+......  ..+..+++++++||.+||.
T Consensus       197 ~~~~y~aPE~~~~~~~~~~~Di~s-lG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  274 (309)
T 2h34_A          197 GTLYYMAPERFSESHATYRADIYA-LTCVLYECLTGSPPYQGDQLSV-MGAHINQAIPRPSTVRPGIPVAFDAVIARGMA  274 (309)
T ss_dssp             CCGGGCCGGGTCC----CCCHHHH-HHHHHHHHHHSSCSSCSCHHHH-HHHHHHSCCCCGGGTSTTCCTHHHHHHHHHTC
T ss_pred             CCcCccCHHHHcCCCCCchHhHHH-HHHHHHHHHHCCCCCCCchHHH-HHHHhccCCCCccccCCCCCHHHHHHHHHhcc
Confidence            334489999998877777779999 9999999999999987654332 22222111111  1234578899999999999


Q ss_pred             cc------CHHHHHc
Q 013230          426 YN------SAKEAIF  434 (447)
Q Consensus       426 ~d------sa~elL~  434 (447)
                      .|      |++++++
T Consensus       275 ~dP~~Rp~s~~~l~~  289 (309)
T 2h34_A          275 KNPEDRYVTCGDLSA  289 (309)
T ss_dssp             SSGGGSCSSHHHHHH
T ss_pred             CCHHHHHHhHHHHHH
Confidence            99      6777664

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.97  E-value=3.3e-32  Score=269.61  Aligned_cols=230  Identities=16%  Similarity=0.157  Sum_probs=175.5

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCcccce
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTTF  205 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~i  205 (447)
                      +|++++.||+|+||.||+|++      ||+|++.....          ...+.+|+.+++.| +|        ||    |
T Consensus        10 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----------~~~~~~E~~~l~~l~~h--------~~----i   67 (330)
T 2izr_A           10 NFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR----------APQLHLEYRFYKQLGSG--------DG----I   67 (330)
T ss_dssp             TEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS----------SCCHHHHHHHHHHHCSC--------TT----S
T ss_pred             CeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc----------hHHHHHHHHHHHHhhCC--------CC----C
Confidence            459999999999999999973      99999875421          13478999999999 66        77    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVT  280 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil  280 (447)
                      +++++++..                              .+..|+||||+ +| +|.+++.     +++..++.++.||+
T Consensus        68 ~~~~~~~~~------------------------------~~~~~lv~e~~-~~-~L~~~~~~~~~~~~~~~~~~i~~qi~  115 (330)
T 2izr_A           68 PQVYYFGPC------------------------------GKYNAMVLELL-GP-SLEDLFDLCDRTFSLKTVLMIAIQLI  115 (330)
T ss_dssp             CCEEEEEEE------------------------------TTEEEEEEECC-CC-BHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred             CEEEEEEec------------------------------CCccEEEEEeC-CC-CHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            999998654                              46689999999 77 9999876     89999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------------CEEE
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------------DIFF  348 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------------g~i~  348 (447)
                      .||+|||+ .||+||||||+|||++.++.               .....+||+|||+|+.....            ....
T Consensus       116 ~~l~~LH~-~~iiHrDlkp~Nill~~~~~---------------~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~g  179 (330)
T 2izr_A          116 SRMEYVHS-KNLIYRDVKPENFLIGRPGN---------------KTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTG  179 (330)
T ss_dssp             HHHHHHHH-TTEECCCCCGGGEEECCGGG---------------TCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCS
T ss_pred             HHHHHHHh-CCeeccCCCHHHeeeccCCC---------------CCCceEEEEEcccceeeecCCCCccccccccCCcCC
Confidence            99999999 99999999999999998761               00013999999999875332            1223


Q ss_pred             EecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChh---HHHHHHHHHHhhccCCCC---CccchHHHHHHHHH
Q 013230          349 LDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV---LWLVYLVDMLLLKKTFDR---SSKDERDLRSLKKR  422 (447)
Q Consensus       349 ~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~---~~~~~~~~~l~~~~~~~~---~~~~s~~l~dLl~~  422 (447)
                      ...|++||.+.+...+.+.|||+ +|.+.++++.|..||...   ........+.......+.   ....+ ++++||.+
T Consensus       180 t~~y~aPE~~~~~~~~~~~Di~s-lG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~p-~~~~li~~  257 (330)
T 2izr_A          180 TARYMSINTHLGKEQSRRDDLEA-LGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCENFP-EMATYLRY  257 (330)
T ss_dssp             CTTTCCHHHHTTCCCCHHHHHHH-HHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHHSCHHHHTTTCH-HHHHHHHH
T ss_pred             CccccChHHHcCCCCCchhHHHH-HHHHHHHHhcCCCCccccccccHHHHHHHHHhhhccCCHHHHhccCh-HHHHHHHH
Confidence            34589999999977777889999 999999999999998652   111112222111111111   11234 99999999


Q ss_pred             hcccc-----CHHHHHc
Q 013230          423 LDKYN-----SAKEAIF  434 (447)
Q Consensus       423 mL~~d-----sa~elL~  434 (447)
                      ||..|     +++++++
T Consensus       258 ~l~~~p~~RP~~~~l~~  274 (330)
T 2izr_A          258 VRRLDFFEKPDYDYLRK  274 (330)
T ss_dssp             HHHCCTTCCCCHHHHHH
T ss_pred             HHhCCCCCCCCHHHHHH
Confidence            99998     7777654

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.97  E-value=6e-32  Score=267.23  Aligned_cols=230  Identities=17%  Similarity=0.171  Sum_probs=181.1

Q ss_pred             CCcceEEeccccceEEEEece--------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCccc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN--------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACT  203 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~--------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~  203 (447)
                      +|++.+.||+|+||.||+|++        +|+|.+....       .....+.+.+|+.+++++ +|        ||   
T Consensus        26 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~-------~~~~~~~~~~E~~~l~~l~~h--------p~---   87 (327)
T 1fvr_A           26 DIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYA-------SKDDHRDFAGELEVLCKLGHH--------PN---   87 (327)
T ss_dssp             GCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC-------------CHHHHHHHHHTTCCCC--------TT---
T ss_pred             HccceeeeecCCCceEEEEEEccCCcccceeeeeecccc-------chHHHHHHHHHHHHHHhccCC--------Cc---
Confidence            349999999999999999973        4888876431       222345688999999999 66        77   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----------------
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----------------  266 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----------------  266 (447)
                       |+++++++..                              .+.+|+||||+.+| +|.+++.                 
T Consensus        88 -iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~  135 (327)
T 1fvr_A           88 -IINLLGACEH------------------------------RGYLYLAIEYAPHG-NLLDFLRKSRVLETDPAFAIANST  135 (327)
T ss_dssp             -BCCEEEEEEE------------------------------TTEEEEEECCCTTC-BHHHHHHTTCHHHHCHHHHHHTTB
T ss_pred             -hhhhceeeee------------------------------CCceEEEEecCCCC-CHHHHHHhcccccccccccccccc
Confidence             9999999654                              56799999999988 9998873                 


Q ss_pred             ---CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCC
Q 013230          267 ---LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG  343 (447)
Q Consensus       267 ---l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~  343 (447)
                         +++..++.++.||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+++....
T Consensus       136 ~~~~~~~~~~~i~~qi~~aL~~LH~-~~ivH~dlkp~NIl~~~~~--------------------~~kL~Dfg~~~~~~~  194 (327)
T 1fvr_A          136 ASTLSSQQLLHFAADVARGMDYLSQ-KQFIHRDLAARNILVGENY--------------------VAKIADFGLSRGQEV  194 (327)
T ss_dssp             SCSSCHHHHHHHHHHHHHHHHHHHH-TTEECSCCSGGGEEECGGG--------------------CEEECCTTCEESSCE
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHh-CCccCCCCccceEEEcCCC--------------------eEEEcccCcCccccc
Confidence               7899999999999999999999 9999999999999999887                    799999999974322


Q ss_pred             C---C-EEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHH
Q 013230          344 E---D-IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRS  418 (447)
Q Consensus       344 ~---g-~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~d  418 (447)
                      .   . ......|++||.+.+.....+.|||+ +|.+.+++++ +..|+.......... .+......+.+...++++++
T Consensus       195 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s-lG~il~ellt~g~~pf~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~  272 (327)
T 1fvr_A          195 YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWS-YGVLLWEIVSLGGTPYCGMTCAELYE-KLPQGYRLEKPLNCDDEVYD  272 (327)
T ss_dssp             ECCC----CCTTTCCHHHHHHCEECHHHHHHH-HHHHHHHHHTTSCCTTTTCCHHHHHH-HGGGTCCCCCCTTBCHHHHH
T ss_pred             cccccCCCCCccccChhhhccccCCchhcchH-HHHHHHHHHcCCCCCCCCCcHHHHHH-HhhcCCCCCCCCCCCHHHHH
Confidence            1   1 11223488999988766677779999 9999999998 888887654433333 33223344455678999999


Q ss_pred             HHHHhcccc-----CHHHHHcC
Q 013230          419 LKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       419 Ll~~mL~~d-----sa~elL~H  435 (447)
                      ||.+||..|     |++|+++|
T Consensus       273 li~~~l~~dp~~Rps~~ell~~  294 (327)
T 1fvr_A          273 LMRQCWREKPYERPSFAQILVS  294 (327)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHccCChhhCcCHHHHHHH
Confidence            999999999     99998865

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.97  E-value=3.3e-32  Score=266.96  Aligned_cols=238  Identities=18%  Similarity=0.199  Sum_probs=169.5

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|++      ||+|++.....      .....+.+.++..+++.++|        ||    |+
T Consensus        26 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~------~~~~~~~~~~~~~~~~~~~h--------~~----i~   87 (318)
T 2dyl_A           26 DLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGN------KEENKRILMDLDVVLKSHDC--------PY----IV   87 (318)
T ss_dssp             GEEEEEEC------CEEEEEETTTCCEEEEEEEETTSC------HHHHHHHHHHHHHHHHTTTC--------TT----BC
T ss_pred             cccccceeeecCCeeEEEEEEecCCeEEEEEEeccccc------chHHHHHHHHHHHHHHhcCC--------Cc----ee
Confidence            349999999999999999973      99999875432      11222334445556777777        77    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      ++++++..                              ++.+|+||||+ ++ .+..+..     +++..++.++.||+.
T Consensus        88 ~~~~~~~~------------------------------~~~~~lv~e~~-~~-~~~~l~~~~~~~~~~~~~~~~~~~i~~  135 (318)
T 2dyl_A           88 QCFGTFIT------------------------------NTDVFIAMELM-GT-CAEKLKKRMQGPIPERILGKMTVAIVK  135 (318)
T ss_dssp             CEEEEEEC------------------------------SSEEEEEECCC-SE-EHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred             eEEEEEec------------------------------CCcEEEEEecc-CC-cHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence            99999643                              56799999999 34 6665543     899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPEL  357 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pel  357 (447)
                      ||.|||+.+||+||||||+|||++.++                    .+||+|||+++......    ......|++||.
T Consensus       136 ~l~~lH~~~~i~H~dlkp~Nil~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~  195 (318)
T 2dyl_A          136 ALYYLKEKHGVIHRDVKPSNILLDERG--------------------QIKLCDFGISGRLVDDKAKDRSAGCAAYMAPER  195 (318)
T ss_dssp             HHHHHHHHHCCCCCCCCGGGEEECTTS--------------------CEEECCCTTC--------------CCTTCCHHH
T ss_pred             HHHHHHhhCCEEeCCCCHHHEEECCCC--------------------CEEEEECCCchhccCCccccccCCCccccChhh
Confidence            999999834999999999999999887                    79999999997654332    233455899999


Q ss_pred             CC-----CCCCCchHHHHHhhccCCcccccCCCCCChh-HHHHHHHHHHhhc-cCCCCCccchHHHHHHHHHhcccc---
Q 013230          358 FS-----GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV-LWLVYLVDMLLLK-KTFDRSSKDERDLRSLKKRLDKYN---  427 (447)
Q Consensus       358 f~-----g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~-~~~~~~~~~l~~~-~~~~~~~~~s~~l~dLl~~mL~~d---  427 (447)
                      +.     +.....+.|||+ +|.+.++++.+..|+... .....+...+... ..++....+++++++||.+||..|   
T Consensus       196 ~~~~~~~~~~~~~~~Di~s-lG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~  274 (318)
T 2dyl_A          196 IDPPDPTKPDYDIRADVWS-LGISLVELATGQFPYKNCKTDFEVLTKVLQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRK  274 (318)
T ss_dssp             HC--------CCTHHHHHH-HHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSCCCCCCSSSCCCHHHHHHHHHHTCSCTTT
T ss_pred             cccccccccCCccccchhh-HHHHHHHHHhCCCCCCCCCccHHHHHHHhccCCCCCCccCCCCHHHHHHHHHHccCChhH
Confidence            84     334556779999 999999999999998652 2222233333221 233334468999999999999999   


Q ss_pred             --CHHHHHcCCCCCCC
Q 013230          428 --SAKEAIFDPFFSDL  441 (447)
Q Consensus       428 --sa~elL~HPff~~~  441 (447)
                        |++|+++||||++.
T Consensus       275 Rps~~~ll~h~~~~~~  290 (318)
T 2dyl_A          275 RPKYNKLLEHSFIKRY  290 (318)
T ss_dssp             SCCHHHHTTSHHHHHH
T ss_pred             CcCHHHHhhCHHHHhc
Confidence              99999999999754

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.97  E-value=3.1e-32  Score=260.46  Aligned_cols=228  Identities=17%  Similarity=0.232  Sum_probs=184.6

Q ss_pred             CCcceEEeccccceEEEEece-----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN-----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~-----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      +|++++.||+|+||.||+|++     ||+|++.....         ..+.+.+|+.+++.++|        ||    |++
T Consensus         9 ~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~---------~~~~~~~e~~~l~~l~h--------~~----i~~   67 (267)
T 3t9t_A            9 ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM---------SEEDFIEEAEVMMKLSH--------PK----LVQ   67 (267)
T ss_dssp             GEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB---------CHHHHHHHHHHHHTCCC--------TT----BCC
T ss_pred             heeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC---------CHHHHHHHHHHHHhCCC--------CC----Eee
Confidence            349999999999999999973     99999874421         23678999999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++.                              .++..|+||||+.+| +|.+++.     +++..+..++.||+.|
T Consensus        68 ~~~~~~------------------------------~~~~~~lv~e~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~i~~~  116 (267)
T 3t9t_A           68 LYGVCL------------------------------EQAPICLVTEFMEHG-CLSDYLRTQRGLFAAETLLGMCLDVCEG  116 (267)
T ss_dssp             EEEEEC------------------------------SSSSCEEEECCCTTC-BHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred             EEEEEc------------------------------cCCCeEEEEeCCCCC-cHHHHHhhCcccCCHHHHHHHHHHHHHH
Confidence            999853                              246699999999988 9999876     8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------CEEEEecCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------DIFFLDLSQDPE  356 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g~i~~~~~~~pe  356 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+++.....      +......|++||
T Consensus       117 l~~lH~-~~i~H~dl~p~Nili~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE  175 (267)
T 3t9t_A          117 MAYLEE-ACVIHRDLAARNCLVGENQ--------------------VIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPE  175 (267)
T ss_dssp             HHHHHH-TTCCCSSCCGGGEEECGGG--------------------CEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHH
T ss_pred             HHHHHh-CCcccCCCchheEEECCCC--------------------CEEEcccccccccccccccccccccccccccChh
Confidence            999999 9999999999999999887                    7999999999865332      212223488999


Q ss_pred             CCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      .+.+.......|+|+ +|.+.+++++ +..|+.............. ......+...++++.+|+++||..|     |+.
T Consensus       176 ~~~~~~~~~~~Di~s-lG~il~~l~~~g~~p~~~~~~~~~~~~i~~-~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~  253 (267)
T 3t9t_A          176 VFSFSRYSSKSDVWS-FGVLMWEVFSEGKIPYENRSNSEVVEDIST-GFRLYKPRLASTHVYQIMNHCWRERPEDRPAFS  253 (267)
T ss_dssp             HHHHCCCCHHHHHHH-HHHHHHHHHTTSCCTTTTCCHHHHHHHHHT-TCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             hhcCCCccchhchhh-hHHHHHHHhccCCCCCCCCCHHHHHHHHhc-CCcCCCCccCcHHHHHHHHHHccCChhhCcCHH
Confidence            988767777789999 9999999998 7888876544443333332 2233345567899999999999999     999


Q ss_pred             HHHcC
Q 013230          431 EAIFD  435 (447)
Q Consensus       431 elL~H  435 (447)
                      +++++
T Consensus       254 ~ll~~  258 (267)
T 3t9t_A          254 RLLRQ  258 (267)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98864

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.97  E-value=4.2e-32  Score=267.11  Aligned_cols=229  Identities=20%  Similarity=0.202  Sum_probs=183.7

Q ss_pred             CcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          134 PENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      |++.+.||+|+||.||+|+           .||+|++....       .......+.+|+.+++.++|        ||  
T Consensus        27 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------~~--   89 (322)
T 1p4o_A           27 ITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA-------SMRERIEFLNEASVMKEFNC--------HH--   89 (322)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS-------CHHHHHHHHHHHHHGGGCCC--------TT--
T ss_pred             eeeeeEeccCCceEEEeeeecCccCCCCceEEEEEeccccc-------CHHHHHHHHHHHHHHHhcCC--------CC--
Confidence            3999999999999999985           28888876331       22334568899999999988        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------------CC
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------------LN  268 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------------l~  268 (447)
                        |+++++++.                              ..+..|+||||+.+| +|.+++.              ++
T Consensus        90 --i~~~~~~~~------------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~  136 (322)
T 1p4o_A           90 --VVRLLGVVS------------------------------QGQPTLVIMELMTRG-DLKSYLRSLRPAMANNPVLAPPS  136 (322)
T ss_dssp             --BCCEEEEEC------------------------------SSSSCEEEEECCTTC-BHHHHHHHHHHHHHHCTTCCCCC
T ss_pred             --EeeeEEEEc------------------------------cCCccEEEEEeCCCC-cHHHHHHHhchhhccCCCCCCcC
Confidence              999999842                              246689999999988 9999875              48


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC---
Q 013230          269 INEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED---  345 (447)
Q Consensus       269 ~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g---  345 (447)
                      +..+..++.||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+++......   
T Consensus       137 ~~~~~~i~~qi~~~l~~lH~-~~i~H~dikp~NIli~~~~--------------------~~kl~Dfg~~~~~~~~~~~~  195 (322)
T 1p4o_A          137 LSKMIQMAGEIADGMAYLNA-NKFVHRDLAARNCMVAEDF--------------------TVKIGDFGMTRDIYETDYYR  195 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TTCBCSCCSGGGEEECTTC--------------------CEEECCTTCCCGGGGGGCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHH-CCCccCCCccceEEEcCCC--------------------eEEECcCccccccccccccc
Confidence            89999999999999999999 9999999999999999887                    79999999998653321   


Q ss_pred             ----EEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHH
Q 013230          346 ----IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLK  420 (447)
Q Consensus       346 ----~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl  420 (447)
                          ......|++||.+.+.....+.|||+ +|.+.+++++ +..|+............. .....+.+...++++++||
T Consensus       196 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s-lG~il~el~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li  273 (322)
T 1p4o_A          196 KGGKGLLPVRWMSPESLKDGVFTTYSDVWS-FGVVLWEIATLAEQPYQGLSNEQVLRFVM-EGGLLDKPDNCPDMLFELM  273 (322)
T ss_dssp             GGGSSEECGGGCCHHHHHHCCCCHHHHHHH-HHHHHHHHHHTSCCTTTTSCHHHHHHHHH-TTCCCCCCTTCCHHHHHHH
T ss_pred             cccCCCCCCCccChhhhccCCCCchhhHHH-HHHHHHHHHhcCCCccccCCHHHHHHHHH-cCCcCCCCCCCCHHHHHHH
Confidence                12334589999998877777889999 9999999998 778876543333332222 2333444567899999999


Q ss_pred             HHhcccc-----CHHHHHcC
Q 013230          421 KRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       421 ~~mL~~d-----sa~elL~H  435 (447)
                      .+||..|     |+.|+++|
T Consensus       274 ~~~l~~dp~~Rps~~e~l~~  293 (322)
T 1p4o_A          274 RMCWQYNPKMRPSFLEIISS  293 (322)
T ss_dssp             HHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHcCCCcccCcCHHHHHHH
Confidence            9999999     99999877

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.97  E-value=8.9e-32  Score=278.62  Aligned_cols=227  Identities=19%  Similarity=0.235  Sum_probs=183.2

Q ss_pred             CCcceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          133 DPENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      +|+++++||+|+||.||+|.    .||+|++....          ..+.+.+|+.+|++++|        ||    |+++
T Consensus       194 ~~~~~~~lG~G~fg~V~~~~~~~~~vavK~~~~~~----------~~~~~~~E~~~l~~l~h--------~n----iv~~  251 (450)
T 1k9a_A          194 ELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA----------TAQAFLAEASVMTQLRH--------SN----LVQL  251 (450)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTEEEEEEEESSCT----------TSHHHHHHHHHHHTCCC--------TT----BCCE
T ss_pred             HeEEEeeecCcCCeeEEEEEecCCeEEEEEeCCch----------HHHHHHHHHHHHHhccC--------CC----EEEE
Confidence            45999999999999999997    49999986331          34678999999999998        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAG  282 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~g  282 (447)
                      ++++..                             .++.+||||||+.+| +|.+++.      +++..+..++.||+.|
T Consensus       252 ~~~~~~-----------------------------~~~~~~iv~e~~~~g-~L~~~l~~~~~~~~~~~~~~~~~~qi~~~  301 (450)
T 1k9a_A          252 LGVIVE-----------------------------EKGGLYIVTEYMAKG-SLVDYLRSRGRSVLGGDCLLKFSLDVCEA  301 (450)
T ss_dssp             EEEEEC-----------------------------TTSCEEEEEECCTTC-BHHHHHHHHCTTTCCHHHHHHHHHHHHHH
T ss_pred             EEEEEc-----------------------------CCCceEEEEEecCCC-cHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            998543                             134699999999988 9999886      6899999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE--EEEecCCCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI--FFLDLSQDPELFSG  360 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~--i~~~~~~~pelf~g  360 (447)
                      |+|||+ +||+||||||+|||++.++                    .+||+|||+|+.......  .....|++||.+.+
T Consensus       302 l~~LH~-~~ivHrDlkp~Nill~~~~--------------------~~kl~DfG~a~~~~~~~~~~~~~~~y~aPE~~~~  360 (450)
T 1k9a_A          302 MEYLEG-NNFVHRDLAARNVLVSEDN--------------------VAKVSDFGLTKEASSTQDTGKLPVKWTAPEALRE  360 (450)
T ss_dssp             HHHHHH-TTEECSCCCGGGEEECTTS--------------------CEEECCCTTCEECC------CCCTTTSCHHHHHS
T ss_pred             HHHHHh-CCeeCCCCCHhhEEECCCC--------------------CEEEeeCCCcccccccccCCCCCcceeCHHHhcC
Confidence            999999 9999999999999999887                    799999999986543321  12234899999988


Q ss_pred             CCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      ...+.+.|+|+ +|.+.+++++ |..|+........... +......+.+...++++.+||++||..|     |+.++++
T Consensus       361 ~~~~~~sDvws-lG~~l~el~t~g~~P~~~~~~~~~~~~-i~~~~~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~  438 (450)
T 1k9a_A          361 KKFSTKSDVWS-FGILLWEIYSFGRVPYPRIPLKDVVPR-VEKGYKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLRE  438 (450)
T ss_dssp             SCCCHHHHHHH-HHHHHHHHHTTTCCSSTTSCTTTHHHH-HHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCcHHHHHH-HHHHHHHHHhCCCCCCCCCCHHHHHHH-HHcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence            77788889999 9999999998 8888865432222222 2222345556778999999999999999     8888764

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.97  E-value=1.9e-32  Score=270.81  Aligned_cols=235  Identities=20%  Similarity=0.224  Sum_probs=183.6

Q ss_pred             CcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          134 PENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      |++++.||+|+||.||+|+           .||+|++...       ........+.+|+.+++.++|        ||  
T Consensus        32 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-------~~~~~~~~~~~E~~~l~~l~h--------~~--   94 (327)
T 2yfx_A           32 ITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV-------CSEQDELDFLMEALIISKFNH--------QN--   94 (327)
T ss_dssp             CEEEEECC--CSSCEEEEEC--------CCEEEEEECCSS-------CCHHHHHHHHHHHHHHHHCCC--------TT--
T ss_pred             eEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccc-------cchhhHHHHHHHHHHHhhCCC--------CC--
Confidence            4999999999999999997           3999988633       122334578899999999988        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----------CCHHH
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----------LNINE  271 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----------l~~~~  271 (447)
                        |+++++++..                              ....|+||||+.+| +|.+++.           +++..
T Consensus        95 --iv~~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~  141 (327)
T 2yfx_A           95 --IVRCIGVSLQ------------------------------SLPRFILMELMAGG-DLKSFLRETRPRPSQPSSLAMLD  141 (327)
T ss_dssp             --BCCEEEEECS------------------------------SSSCEEEEECCTTE-EHHHHHHHTSCCSSSTTSCCHHH
T ss_pred             --CCeEEEEEcC------------------------------CCCcEEEEecCCCC-cHHHHHHhhcccccccccccHHH
Confidence              9999998532                              45689999999988 9999875           78899


Q ss_pred             HHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----
Q 013230          272 ARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----  346 (447)
Q Consensus       272 ~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----  346 (447)
                      ++.++.||+.||.|||+ .||+||||||+|||++.++.                 +..+||+|||+++.......     
T Consensus       142 ~~~i~~qi~~al~~LH~-~~i~H~dlkp~NIli~~~~~-----------------~~~~kl~Dfg~~~~~~~~~~~~~~~  203 (327)
T 2yfx_A          142 LLHVARDIACGCQYLEE-NHFIHRDIAARNCLLTCPGP-----------------GRVAKIGDFGMARDIYRASYYRKGG  203 (327)
T ss_dssp             HHHHHHHHHHHHHHHHH-TTCCCSCCCGGGEEESCSST-----------------TCCEEECCCHHHHHHHC------CC
T ss_pred             HHHHHHHHHHHHHHHhh-CCeecCcCCHhHEEEecCCC-----------------cceEEECccccccccccccccccCC
Confidence            99999999999999999 99999999999999996541                 12699999999975433211     


Q ss_pred             --EEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHh
Q 013230          347 --FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRL  423 (447)
Q Consensus       347 --i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~m  423 (447)
                        .....|++||.+.+...+.+.|||+ +|.+.+++++ +..|+............. .......+..+++++++||.+|
T Consensus       204 ~~~~~~~y~aPE~~~~~~~~~~~Di~s-lG~il~ellt~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~  281 (327)
T 2yfx_A          204 CAMLPVKWMPPEAFMEGIFTSKTDTWS-FGVLLWEIFSLGYMPYPSKSNQEVLEFVT-SGGRMDPPKNCPGPVYRIMTQC  281 (327)
T ss_dssp             GGGSCGGGCCHHHHHHCCCCHHHHHHH-HHHHHHHHHTTSCCSSTTCCHHHHHHHHH-TTCCCCCCTTCCHHHHHHHHHH
T ss_pred             CcCCCcceeCHhHhcCCCCCchhhHHH-HHHHHHHHHcCCCCCCCCcCHHHHHHHHh-cCCCCCCCCCCCHHHHHHHHHH
Confidence              1122488999987777777789999 9999999997 778886544333333222 2233444567899999999999


Q ss_pred             cccc-----CHHHHHcCCCC
Q 013230          424 DKYN-----SAKEAIFDPFF  438 (447)
Q Consensus       424 L~~d-----sa~elL~HPff  438 (447)
                      |..|     |+.|+++|.|+
T Consensus       282 l~~dp~~Rps~~~ll~~l~~  301 (327)
T 2yfx_A          282 WQHQPEDRPNFAIILERIEY  301 (327)
T ss_dssp             TCSSGGGSCCHHHHHHHHHH
T ss_pred             hcCChhhCcCHHHHHHHHHH
Confidence            9999     99999998765

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.97  E-value=1.3e-31  Score=262.50  Aligned_cols=231  Identities=19%  Similarity=0.179  Sum_probs=174.2

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||.||+|.+      ||+|++.....     ........+.+|+.+++.++|        ||    |++
T Consensus        34 y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-----~~~~~~~~~~~E~~~l~~l~h--------~~----i~~   96 (310)
T 2wqm_A           34 FRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDL-----MDAKARADCIKEIDLLKQLNH--------PN----VIK   96 (310)
T ss_dssp             EEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSS-----CCHHHHHHHHHHHHHHHTCCC--------TT----BCC
T ss_pred             eEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhc-----cCHHHHHHHHHHHHHHHhCCC--------CC----Eee
Confidence            49999999999999999973      99999875422     223345678999999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQV  279 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Qi  279 (447)
                      +++++..                              .+..|+||||+.+| +|.+++.        +++..++.++.||
T Consensus        97 ~~~~~~~------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~i~~qi  145 (310)
T 2wqm_A           97 YYASFIE------------------------------DNELNIVLELADAG-DLSRMIKHFKKQKRLIPERTVWKYFVQL  145 (310)
T ss_dssp             EEEEEEE------------------------------TTEEEEEEECCCSC-BHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             EEEEEEc------------------------------CCcEEEEEecCCCC-CHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence            9999654                              56799999999988 9998874        8999999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQD  354 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~  354 (447)
                      +.||.|||+ .||+||||||+|||++.++                    .+||+|||+++......     ......|++
T Consensus       146 ~~~l~~LH~-~~i~H~dl~p~NIl~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~a  204 (310)
T 2wqm_A          146 CSALEHMHS-RRVMHRDIKPANVFITATG--------------------VVKLGDLGLGRFFSSKTTAAHSLVGTPYYMS  204 (310)
T ss_dssp             HHHHHHHHH-TTCCCCCCCGGGEEECTTS--------------------CEEECCC------------------CCSSCC
T ss_pred             HHHHHHHhh-CCeeCCCCcHHHEEEcCCC--------------------CEEEEeccceeeecCCCccccccCCCeeEeC
Confidence            999999999 9999999999999999887                    79999999998754432     123345899


Q ss_pred             CCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHH-HHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc----
Q 013230          355 PELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWL-VYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       355 pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~-~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d----  427 (447)
                      ||.+.+.......|+|+ +|.+.++++++..|+...... ..+...+. ...++.  ...+++++++||.+||..|    
T Consensus       205 PE~~~~~~~~~~~Dv~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R  282 (310)
T 2wqm_A          205 PERIHENGYNFKSDIWS-LGCLLYEMAALQSPFYGDKMNLYSLCKKIE-QCDYPPLPSDHYSEELRQLVNMCINPDPEKR  282 (310)
T ss_dssp             HHHHTTCCCCHHHHHHH-HHHHHHHHHHSSCTTC---CCHHHHHHHHH-TTCSCCCCTTTSCHHHHHHHHHHTCSSGGGS
T ss_pred             hHHhCCCCCCchhhHHH-HHHHHHHHHhCCCCCcccchhHHHHHHHhh-cccCCCCcccccCHHHHHHHHHHcCCChhhC
Confidence            99998877777789999 999999999999888643211 11112221 122221  2567899999999999999    


Q ss_pred             -CHHHHHcC
Q 013230          428 -SAKEAIFD  435 (447)
Q Consensus       428 -sa~elL~H  435 (447)
                       |+.+++++
T Consensus       283 ps~~~il~~  291 (310)
T 2wqm_A          283 PDVTYVYDV  291 (310)
T ss_dssp             CCHHHHHHH
T ss_pred             CCHHHHHHH
Confidence             99988753

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=1.3e-32  Score=278.25  Aligned_cols=230  Identities=19%  Similarity=0.185  Sum_probs=174.0

Q ss_pred             CcceEEeccccceEEEEece---------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          134 PENIVKVGEGTFGEAFLAGN---------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~---------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      |++.+.||+|+||.||+|+.         +|+|.+...       ......+.+.+|+.+++.++|        ||    
T Consensus        91 ~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~-------~~~~~~~~~~~E~~il~~l~h--------pn----  151 (373)
T 3c1x_A           91 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI-------TDIGEVSQFLTEGIIMKDFSH--------PN----  151 (373)
T ss_dssp             EEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSC-------SCSHHHHHHHHHHTTSTTCCC--------TT----
T ss_pred             eecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCC-------CCHHHHHHHHHHHHHHHhCCC--------CC----
Confidence            47889999999999999872         788877532       222345678999999999988        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQV  279 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qi  279 (447)
                      |+++++++..                             .++..|+||||+.+| +|.+++.     +++..+..++.||
T Consensus       152 Iv~~~~~~~~-----------------------------~~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~i~~qi  201 (373)
T 3c1x_A          152 VLSLLGICLR-----------------------------SEGSPLVVLPYMKHG-DLRNFIRNETHNPTVKDLIGFGLQV  201 (373)
T ss_dssp             BCCCCEEECC-----------------------------CSSCCEEEEECCTTC-BHHHHHHCTTCCCBHHHHHHHHHHH
T ss_pred             cceEEEEEEc-----------------------------CCCCeEEEEECCCCC-CHHHHHhhcccCCCHHHHHHHHHHH
Confidence            9999998422                             245689999999988 9999986     7889999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC---------EEEEe
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED---------IFFLD  350 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g---------~i~~~  350 (447)
                      +.||+|||+ .||+||||||+|||++.++                    .+||+|||+|+......         .....
T Consensus       202 ~~aL~~LH~-~~ivHrDlkp~NIll~~~~--------------------~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~  260 (373)
T 3c1x_A          202 AKGMKFLAS-KKFVHRDLAARNCMLDEKF--------------------TVKVADFGLARDMYDKEFDSVHNKTGAKLPV  260 (373)
T ss_dssp             HHHHHHHHH-TTCCCSCCCGGGEEECTTC--------------------CEEECCC---------------------CCG
T ss_pred             HHHHHHHHH-CCEecCccchheEEECCCC--------------------CEEEeeccccccccccccccccccCCCCCcc
Confidence            999999999 9999999999999999887                    79999999998653321         11223


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc--
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d--  427 (447)
                      .|++||.+.+...+.+.|+|+ +|.+.+++++ +..|+........... +........+...+.++.+||.+||..|  
T Consensus       261 ~y~aPE~~~~~~~~~~~DvwS-lG~il~ellt~~~~p~~~~~~~~~~~~-~~~~~~~~~p~~~~~~l~~li~~cl~~dp~  338 (373)
T 3c1x_A          261 KWMALESLQTQKFTTKSDVWS-FGVLLWELMTRGAPPYPDVNTFDITVY-LLQGRRLLQPEYCPDPLYEVMLKCWHPKAE  338 (373)
T ss_dssp             GGSCHHHHHHCCCCHHHHHHH-HHHHHHHHHTTSCCSCTTSCSSCHHHH-HHTTCCCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             cccChHHhcCCCCCcHHHHHH-HHHHHHHHHhCcCCCCCCCCHHHHHHH-HHcCCCCCCCCCCCHHHHHHHHHHcCCChh
Confidence            489999998877777889999 9999999998 5556544322111222 2222334445678899999999999999  


Q ss_pred             ---CHHHHHcC
Q 013230          428 ---SAKEAIFD  435 (447)
Q Consensus       428 ---sa~elL~H  435 (447)
                         |+.|++++
T Consensus       339 ~RPs~~ell~~  349 (373)
T 3c1x_A          339 MRPSFSELVSR  349 (373)
T ss_dssp             GSCCHHHHHHH
T ss_pred             hCcCHHHHHHH
Confidence               89988754

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.97  E-value=2.3e-32  Score=286.48  Aligned_cols=227  Identities=22%  Similarity=0.260  Sum_probs=184.2

Q ss_pred             CCcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.++||+|+||.||+|+      .||+|++....         ...+.+.+|+.+|++++|        ||    ||
T Consensus       221 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~---------~~~~~~~~E~~~l~~l~h--------pn----iv  279 (495)
T 1opk_A          221 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT---------MEVEEFLKEAAVMKEIKH--------PN----LV  279 (495)
T ss_dssp             GEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS---------SCHHHHHHHHHHHHHCCC--------TT----BC
T ss_pred             HceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc---------cchHHHHHHHHHHHhcCC--------CC----Ee
Confidence            35899999999999999997      39999886432         234678999999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVT  280 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil  280 (447)
                      ++++++.                              ....+||||||+.+| +|.+++.      +++..+..++.||+
T Consensus       280 ~l~~~~~------------------------------~~~~~~lv~E~~~~g-~L~~~l~~~~~~~~~~~~~~~i~~qi~  328 (495)
T 1opk_A          280 QLLGVCT------------------------------REPPFYIITEFMTYG-NLLDYLRECNRQEVSAVVLLYMATQIS  328 (495)
T ss_dssp             CEEEEEC------------------------------SSSSCEEEEECCTTC-BHHHHHHHSCTTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEe------------------------------cCCcEEEEEEccCCC-CHHHHHHhcCcCCCCHHHHHHHHHHHH
Confidence            9999853                              245699999999988 9999875      88999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------EEEEecCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------IFFLDLSQD  354 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------~i~~~~~~~  354 (447)
                      .||+|||+ +||+||||||+|||++.++                    .+||+|||+|+......      ......|++
T Consensus       329 ~~L~~LH~-~~ivHrDlkp~NIll~~~~--------------------~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~a  387 (495)
T 1opk_A          329 SAMEYLEK-KNFIHRNLAARNCLVGENH--------------------LVKVADFGLSRLMTGDTYTAHAGAKFPIKWTA  387 (495)
T ss_dssp             HHHHHHHH-TTEECSCCSGGGEEECGGG--------------------CEEECCTTCEECCTTCCEECCTTCCCCGGGCC
T ss_pred             HHHHHHHh-CCcccCCCChhhEEECCCC--------------------cEEEeecccceeccCCceeecCCCcCCcceeC
Confidence            99999999 9999999999999999887                    79999999999765432      112234889


Q ss_pred             CCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C
Q 013230          355 PELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S  428 (447)
Q Consensus       355 pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s  428 (447)
                      ||.+.+.....+.|||+ +|++.+++++ +..|+....... ....+......+.+...++++.+||.+||..|     |
T Consensus       388 PE~~~~~~~~~~sDvwS-lG~~l~el~t~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs  465 (495)
T 1opk_A          388 PESLAYNKFSIKSDVWA-FGVLLWEIATYGMSPYPGIDLSQ-VYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPS  465 (495)
T ss_dssp             HHHHHHCEECHHHHHHH-HHHHHHHHHTTSCCSSTTCCGGG-HHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred             HhHHhcCCCCcHHhHHh-HHHHHHHHHhCCCCCCCCCCHHH-HHHHHHcCCCCCCCCCCCHHHHHHHHHHcCcChhHCcC
Confidence            99988766777789999 9999999998 777775432222 22223233345556778999999999999999     8


Q ss_pred             HHHHHc
Q 013230          429 AKEAIF  434 (447)
Q Consensus       429 a~elL~  434 (447)
                      +.++++
T Consensus       466 ~~el~~  471 (495)
T 1opk_A          466 FAEIHQ  471 (495)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.97  E-value=5.6e-32  Score=278.83  Aligned_cols=240  Identities=20%  Similarity=0.206  Sum_probs=173.6

Q ss_pred             cceEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~iv~l  208 (447)
                      ...+.||+|+||+||.+.     .||+|++...           ..+.+.+|+.+++.+ +|        ||    ||++
T Consensus        18 ~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~-----------~~~~~~~E~~~l~~l~~H--------pn----Iv~~   74 (434)
T 2rio_A           18 VSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID-----------FCDIALMEIKLLTESDDH--------PN----VIRY   74 (434)
T ss_dssp             EEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG-----------GHHHHHHHHHHHHHHTTS--------TT----BCCE
T ss_pred             eccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH-----------HHHHHHHHHHHHHhccCC--------CC----cCeE
Confidence            567889999999997653     4999988643           224578999999887 66        77    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----C-------CHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----L-------NINEARSLLV  277 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l-------~~~~~~~i~~  277 (447)
                      ++++..                              ++.+|||||||. | +|.+++.    .       ++..+..++.
T Consensus        75 ~~~~~~------------------------------~~~~~lv~E~~~-g-sL~~~l~~~~~~~~~~~~~~~~~~~~i~~  122 (434)
T 2rio_A           75 YCSETT------------------------------DRFLYIALELCN-L-NLQDLVESKNVSDENLKLQKEYNPISLLR  122 (434)
T ss_dssp             EEEEEC------------------------------SSEEEEEECCCS-E-EHHHHHHTC------------CCHHHHHH
T ss_pred             EEEEec------------------------------CCeEEEEEecCC-C-CHHHHHhccCCCchhhhhccchhHHHHHH
Confidence            988532                              567999999995 7 9999886    1       2234567999


Q ss_pred             HHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC---------EEE
Q 013230          278 QVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED---------IFF  348 (447)
Q Consensus       278 Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g---------~i~  348 (447)
                      ||+.||+|||+ +||+||||||+|||++.++.....       .........+||+|||+|+......         ...
T Consensus       123 qi~~aL~~LH~-~~ivHrDLkp~NILl~~~~~~~~~-------~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~g  194 (434)
T 2rio_A          123 QIASGVAHLHS-LKIIHRDLKPQNILVSTSSRFTAD-------QQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSG  194 (434)
T ss_dssp             HHHHHHHHHHH-TTEECCCCSGGGEEEECCHHHHSC-------CTTCCCSCEEEECCCTTCEECCC--------------
T ss_pred             HHHHHHHHHHH-CCccccCCChHhEEEecCcccccc-------cccCCCceEEEEcccccceecCCCCccceeeecCCCC
Confidence            99999999999 999999999999999865310000       0000112379999999998765432         234


Q ss_pred             EecCCCCCCCCC-------CCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCC-----CccchHH
Q 013230          349 LDLSQDPELFSG-------PKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDR-----SSKDERD  415 (447)
Q Consensus       349 ~~~~~~pelf~g-------~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~-----~~~~s~~  415 (447)
                      ...|++||++.+       ...+.+.|||+ +|++.+++++ |..|+.......  ..++.....++.     ...++++
T Consensus       195 t~~y~aPE~~~~~~~~~~~~~~~~~~DiwS-lG~il~ellt~g~~Pf~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~  271 (434)
T 2rio_A          195 TSGWRAPELLEESNNLQTKRRLTRSIDIFS-MGCVFYYILSKGKHPFGDKYSRE--SNIIRGIFSLDEMKCLHDRSLIAE  271 (434)
T ss_dssp             CCTTSCHHHHSCCCTTSCCCCCCTHHHHHH-HHHHHHHHHTTSCCTTCSTTTHH--HHHHHTCCCCCCCTTCCCHHHHHH
T ss_pred             CCCccCHHHhccccccccccCcchhhhhHh-HHHHHHHHHhCCCCCCCCchhhH--HHHhcCCCCcccccccccccchHH
Confidence            455999999876       44566779999 9999999998 788886432111  122211112211     2346789


Q ss_pred             HHHHHHHhcccc-----CHHHHHcCCCCCC
Q 013230          416 LRSLKKRLDKYN-----SAKEAIFDPFFSD  440 (447)
Q Consensus       416 l~dLl~~mL~~d-----sa~elL~HPff~~  440 (447)
                      +++||++||+.|     ||.|+++||||.+
T Consensus       272 ~~~li~~~L~~dP~~Rps~~eil~hp~f~~  301 (434)
T 2rio_A          272 ATDLISQMIDHDPLKRPTAMKVLRHPLFWP  301 (434)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHTSGGGSC
T ss_pred             HHHHHHHHhhCChhhCCCHHHHHhCCccCC
Confidence            999999999999     9999999999975

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.97  E-value=1e-31  Score=259.07  Aligned_cols=225  Identities=21%  Similarity=0.271  Sum_probs=181.4

Q ss_pred             CcceEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          134 PENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      |++++.||+|+||.||+|+     .||+|++....         ...+.+.+|+.+++.++|        ||    |+++
T Consensus        15 y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~---------~~~~~~~~E~~~l~~l~h--------~~----i~~~   73 (279)
T 1qpc_A           15 LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS---------MSPDAFLAEANLMKQLQH--------QR----LVRL   73 (279)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS---------SCHHHHHHHHHHHHHCCC--------TT----BCCE
T ss_pred             hhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc---------ccHHHHHHHHHHHHhCCC--------cC----cceE
Confidence            4999999999999999996     49999886432         234678999999999988        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAG  282 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~g  282 (447)
                      ++++.                               .+..|+||||+.+| +|.+++.      +++..+..++.||+.|
T Consensus        74 ~~~~~-------------------------------~~~~~~v~e~~~~~-~L~~~l~~~~~~~~~~~~~~~i~~qi~~~  121 (279)
T 1qpc_A           74 YAVVT-------------------------------QEPIYIITEYMENG-SLVDFLKTPSGIKLTINKLLDMAAQIAEG  121 (279)
T ss_dssp             EEEEC-------------------------------SSSCEEEEECCTTC-BHHHHTTSHHHHTCCHHHHHHHHHHHHHH
T ss_pred             EEEEc-------------------------------CCCcEEEEecCCCC-CHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence            98842                               34589999999988 9999885      8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE------EEEecCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI------FFLDLSQDPE  356 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~------i~~~~~~~pe  356 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+++.......      .....|++||
T Consensus       122 l~~lH~-~~i~H~dikp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE  180 (279)
T 1qpc_A          122 MAFIEE-RNYIHRDLRAANILVSDTL--------------------SCKIADFGLARLIEDNEYTAREGAKFPIKWTAPE  180 (279)
T ss_dssp             HHHHHH-TTEECSCCSGGGEEECTTS--------------------CEEECCCTTCEECSSSCEECCTTCCCCTTTSCHH
T ss_pred             HHHHHH-CCeeccCCCHhhEEEcCCC--------------------CEEECCCcccccccCcccccccCCCCccCccChh
Confidence            999999 9999999999999999887                    799999999987654322      1223488899


Q ss_pred             CCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      .+.+.......|+|+ +|.+.+++++ +..|+............. .......+...++++.+|+.+||..|     |++
T Consensus       181 ~~~~~~~~~~~Di~s-lG~il~el~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~  258 (279)
T 1qpc_A          181 AINYGTFTIKSDVWS-FGILLTEIVTHGRIPYPGMTNPEVIQNLE-RGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFD  258 (279)
T ss_dssp             HHHHCEECHHHHHHH-HHHHHHHHHTTTCCSSTTCCHHHHHHHHH-TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             hhccCCCCchhhhHH-HHHHHHHHHhCCCCCCcccCHHHHHHHHh-cccCCCCcccccHHHHHHHHHHhccChhhCCCHH
Confidence            887766667779999 9999999998 788886543333332222 22233445678899999999999999     888


Q ss_pred             HHHc
Q 013230          431 EAIF  434 (447)
Q Consensus       431 elL~  434 (447)
                      ++++
T Consensus       259 ~l~~  262 (279)
T 1qpc_A          259 YLRS  262 (279)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.97  E-value=1.8e-31  Score=259.27  Aligned_cols=228  Identities=20%  Similarity=0.224  Sum_probs=181.8

Q ss_pred             CcceE-EeccccceEEEEec--------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          134 PENIV-KVGEGTFGEAFLAG--------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       134 ~~~~~-~LG~G~fG~V~~a~--------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      |++.+ .||+|+||.||+|.        .||+|++....      ......+.+.+|+.+++.++|        ||    
T Consensus        18 y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~------~~~~~~~~~~~e~~~l~~l~h--------~~----   79 (291)
T 1xbb_A           18 LTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA------NDPALKDELLAEANVMQQLDN--------PY----   79 (291)
T ss_dssp             EEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----------CHHHHHHHHHHHHHHTCCC--------TT----
T ss_pred             hhhccCccccccCeeeEeeeecCCCceeeEEEEeecccc------cCHHHHHHHHHHHHHHHhCCC--------CC----
Confidence            48888 99999999999993        39999887442      223345678999999999988        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVT  280 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil  280 (447)
                      |+++++++.                               .+..|+||||+.+| +|.+++.    +++..++.++.||+
T Consensus        80 i~~~~~~~~-------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~i~~qi~  127 (291)
T 1xbb_A           80 IVRMIGICE-------------------------------AESWMLVMEMAELG-PLNKYLQQNRHVKDKNIIELVHQVS  127 (291)
T ss_dssp             BCCEEEEEE-------------------------------SSSEEEEEECCTTE-EHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred             EEEEEEEEC-------------------------------CCCcEEEEEeCCCC-CHHHHHHhCcCCCHHHHHHHHHHHH
Confidence            999999852                               35689999999988 9999886    89999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEEE--------EecC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFF--------LDLS  352 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i~--------~~~~  352 (447)
                      .||+|||+ .||+||||||+|||++.++                    .+||+|||+++.........        ...|
T Consensus       128 ~~l~~LH~-~~i~H~dikp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y  186 (291)
T 1xbb_A          128 MGMKYLEE-SNFVHRDLAARNVLLVTQH--------------------YAKISDFGLSKALRADENYYKAQTHGKWPVKW  186 (291)
T ss_dssp             HHHHHHHH-TTEECSCCSGGGEEEEETT--------------------EEEECCCTTCEECCTTCSEEEC----CCCGGG
T ss_pred             HHHHHHHh-CCeEcCCCCcceEEEeCCC--------------------cEEEccCCcceeeccCCCcccccccCCCCcee
Confidence            99999999 9999999999999999987                    79999999998765442211        1238


Q ss_pred             CCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----
Q 013230          353 QDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       353 ~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      ++||.+.+...+.+.|||+ +|.+.+++++ +..|+.......... .+......+.+...++++.+||++||..|    
T Consensus       187 ~aPE~~~~~~~~~~~Di~s-lG~il~~l~~~g~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R  264 (291)
T 1xbb_A          187 YAPECINYYKFSSKSDVWS-FGVLMWEAFSYGQKPYRGMKGSEVTA-MLEKGERMGCPAGCPREMYDLMNLCWTYDVENR  264 (291)
T ss_dssp             CCHHHHHHCEEEHHHHHHH-HHHHHHHHHTTTCCSSTTCCHHHHHH-HHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTS
T ss_pred             eChHHhccCCCChhhhHHH-HHHHHHHHHhcCCCCCCCCCHHHHHH-HHHcCCCCCCCCCCCHHHHHHHHHHcCCChhhC
Confidence            8999887766666779999 9999999998 888887654333322 22222334445678999999999999999    


Q ss_pred             -CHHHHHc
Q 013230          428 -SAKEAIF  434 (447)
Q Consensus       428 -sa~elL~  434 (447)
                       |+.++++
T Consensus       265 ps~~~l~~  272 (291)
T 1xbb_A          265 PGFAAVEL  272 (291)
T ss_dssp             CCHHHHHH
T ss_pred             cCHHHHHH
Confidence             8888874

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.97  E-value=7.3e-32  Score=279.41  Aligned_cols=232  Identities=20%  Similarity=0.266  Sum_probs=185.1

Q ss_pred             CcceEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          134 PENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      |++.++||+|+||.||+|.     .||+|++....         ...+.+.+|+.+|+.|+|        ||    |+++
T Consensus       186 ~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~---------~~~~~~~~E~~~l~~l~h--------p~----iv~~  244 (452)
T 1fmk_A          186 LRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT---------MSPEAFLQEAQVMKKLRH--------EK----LVQL  244 (452)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS---------SCHHHHHHHHHHHHHCCC--------TT----BCCE
T ss_pred             ceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC---------CCHHHHHHHHHHHHhCCC--------CC----EeeE
Confidence            4899999999999999997     39999887432         134678999999999998        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAG  282 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~g  282 (447)
                      ++++.                               ++.+||||||+.+| +|.+++.      +++..+..++.||+.|
T Consensus       245 ~~~~~-------------------------------~~~~~iv~e~~~~g-sL~~~l~~~~~~~~~~~~~~~i~~qi~~~  292 (452)
T 1fmk_A          245 YAVVS-------------------------------EEPIYIVTEYMSKG-SLLDFLKGETGKYLRLPQLVDMAAQIASG  292 (452)
T ss_dssp             EEEEC-------------------------------SSSCEEEECCCTTC-BHHHHHSHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             EEEEc-------------------------------CCceEEEehhhcCC-CHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            98842                               24589999999988 9999886      8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------EEEEecCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------IFFLDLSQDPE  356 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------~i~~~~~~~pe  356 (447)
                      |+|||+ +||+||||||+|||++.++                    .+||+|||+|+......      ......|++||
T Consensus       293 l~~LH~-~~ivHrDlkp~Nill~~~~--------------------~~kl~DfG~a~~~~~~~~~~~~~~~~~~~y~aPE  351 (452)
T 1fmk_A          293 MAYVER-MNYVHRDLRAANILVGENL--------------------VCKVADFGLARLIEDNEYTARQGAKFPIKWTAPE  351 (452)
T ss_dssp             HHHHHH-TTCCCSCCSGGGEEECGGG--------------------CEEECCCCTTC--------------CCGGGSCHH
T ss_pred             HHHHHh-CCeeCCCCChhhEEECCCC--------------------CEEECCCccceecCCCceecccCCcccccccCHh
Confidence            999999 9999999999999999886                    79999999998764331      11223489999


Q ss_pred             CCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      .+.+...+.+.|||+ +|.+.+++++ +..|+............ ......+.+...++++.+||.+||..|     |++
T Consensus       352 ~~~~~~~~~~sDvws-lG~~l~el~t~g~~P~~~~~~~~~~~~i-~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~  429 (452)
T 1fmk_A          352 AALYGRFTIKSDVWS-FGILLTELTTKGRVPYPGMVNREVLDQV-ERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE  429 (452)
T ss_dssp             HHHHCCCCHHHHHHH-HHHHHHHHHTTTCCSSTTCCHHHHHHHH-HTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HHhcCCCCccccHHh-HHHHHHHHHhCCCCCCCCCCHHHHHHHH-HcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHH
Confidence            988777777889999 9999999998 78888654433333332 223345556778999999999999999     999


Q ss_pred             HHHc--CCCCCCC
Q 013230          431 EAIF--DPFFSDL  441 (447)
Q Consensus       431 elL~--HPff~~~  441 (447)
                      ++++  +.+|...
T Consensus       430 ~l~~~L~~~~~~~  442 (452)
T 1fmk_A          430 YLQAFLEDYFTST  442 (452)
T ss_dssp             HHHHHHHTTTSCS
T ss_pred             HHHHHHHHHhccC
Confidence            9876  3666544

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.97  E-value=2.3e-31  Score=262.46  Aligned_cols=233  Identities=17%  Similarity=0.166  Sum_probs=169.9

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhcc-ccccCCCCCCCccccee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN-HLRRNEGDTLNACTTFV  206 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~n~~~~iv  206 (447)
                      |++.++||+|+||.||+|++      ||+|++...        .......+.+|+.+++++. |        ||    |+
T Consensus        30 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--------~~~~~~~~~~e~~~l~~l~~h--------~~----iv   89 (337)
T 3ll6_A           30 LRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSN--------EEEKNRAIIQEVCFMKKLSGH--------PN----IV   89 (337)
T ss_dssp             EEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEES--------SHHHHHHHHHHHHHHHHHTTS--------TT----BC
T ss_pred             EEEEEEEccCCceEEEEEEECCCCcEEEEEEecCC--------chHHHHHHHHHHHHHHHhccC--------CC----hh
Confidence            49999999999999999984      999988543        2233467889999999996 6        77    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------CCHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------LNINEARSLLVQV  279 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------l~~~~~~~i~~Qi  279 (447)
                      ++++++......                      .......+|+||||+. | +|.+++.       +++..++.++.||
T Consensus        90 ~~~~~~~~~~~~----------------------~~~~~~~~~lv~e~~~-g-~L~~~l~~~~~~~~~~~~~~~~i~~qi  145 (337)
T 3ll6_A           90 QFCSAASIGKEE----------------------SDTGQAEFLLLTELCK-G-QLVEFLKKMESRGPLSCDTVLKIFYQT  145 (337)
T ss_dssp             CEEEEEEECTTT----------------------STTSSEEEEEEEECCS-E-EHHHHHHHHHTTCSCCHHHHHHHHHHH
T ss_pred             hccccccccccc----------------------cccCCceEEEEEEecC-C-CHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence            999997642210                      0122455899999996 6 8877764       8999999999999


Q ss_pred             HHHHHHHHHhCC--eeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-----------
Q 013230          280 TAGLAVAEAAYE--FEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-----------  346 (447)
Q Consensus       280 l~gL~ylH~~~~--iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-----------  346 (447)
                      +.||+|||+ .|  |+||||||+|||++.++                    .+||+|||+++.......           
T Consensus       146 ~~~l~~LH~-~~~~ivH~Dikp~NIl~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~  204 (337)
T 3ll6_A          146 CRAVQHMHR-QKPPIIHRDLKVENLLLSNQG--------------------TIKLCDFGSATTISHYPDYSWSAQRRALV  204 (337)
T ss_dssp             HHHHHHHHT-SSSCCBCCCCCGGGCEECTTS--------------------CEEBCCCTTCBCCSSCC------------
T ss_pred             HHHHHHHHh-CCCCEEEccCCcccEEECCCC--------------------CEEEecCccceeccccCcccccccccccc
Confidence            999999999 99  99999999999999987                    799999999987654311           


Q ss_pred             ------EEEecCCCCCCC---CCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHH
Q 013230          347 ------FFLDLSQDPELF---SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLR  417 (447)
Q Consensus       347 ------i~~~~~~~pelf---~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~  417 (447)
                            .....|++||++   .+.....+.|||+ +|.+.++++++..|+...........    ....+.....+..++
T Consensus       205 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~s-lG~il~el~~g~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~  279 (337)
T 3ll6_A          205 EEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWA-LGCILYLLCFRQHPFEDGAKLRIVNG----KYSIPPHDTQYTVFH  279 (337)
T ss_dssp             -------------------CCTTSCSSHHHHHHH-HHHHHHHHHHSSCCC----------------CCCCTTCCSSGGGH
T ss_pred             hhhccccCCCCcCChhhhhccccCCCChHHhHHH-HHHHHHHHHhCCCCCcchhHHHhhcC----cccCCcccccchHHH
Confidence                  133448999998   4545566779999 99999999999999865433222222    223444456778899


Q ss_pred             HHHHHhcccc-----CHHHHHcCC
Q 013230          418 SLKKRLDKYN-----SAKEAIFDP  436 (447)
Q Consensus       418 dLl~~mL~~d-----sa~elL~HP  436 (447)
                      +||++||..|     |+.|+++|-
T Consensus       280 ~li~~~l~~~p~~Rps~~e~l~~l  303 (337)
T 3ll6_A          280 SLIRAMLQVNPEERLSIAEVVHQL  303 (337)
T ss_dssp             HHHHHHSCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHccCChhhCcCHHHHHHHH
Confidence            9999999999     999999873

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.97  E-value=1.8e-32  Score=270.42  Aligned_cols=234  Identities=18%  Similarity=0.173  Sum_probs=180.5

Q ss_pred             CCCcceEEeccccceEEEEece-----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          132 SDPENIVKVGEGTFGEAFLAGN-----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~~-----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .+|++.+.||+|+||.||+|+.     ||+|++.....       ......+.+|+.+++.++|        ||    |+
T Consensus        30 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-------~~~~~~~~~e~~~l~~l~h--------~~----iv   90 (326)
T 3uim_A           30 DNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERT-------QGGELQFQTEVEMISMAVH--------RN----LL   90 (326)
T ss_dssp             TSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC------------CCCHHHHHHHGGGTCCC--------TT----BC
T ss_pred             hccccceeEecCCCcEEEEEEecCCCEEEEEEeccccC-------chHHHHHHHHHHHHHhccC--------CC----cc
Confidence            4569999999999999999973     99998875421       1122368899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQ  278 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Q  278 (447)
                      ++++++.                              ..+..|+||||+.+| +|.+++.        +++..++.++.|
T Consensus        91 ~~~~~~~------------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~i~~~  139 (326)
T 3uim_A           91 RLRGFCM------------------------------TPTERLLVYPYMANG-SVASCLRERPESQPPLDWPKRQRIALG  139 (326)
T ss_dssp             CCCEEEC------------------------------CSSCCEEEEECCTTC-BHHHHHHCCSTTCCCCCHHHHHHHHHH
T ss_pred             ceEEEEe------------------------------cCCceEEEEEeccCC-CHHHHHHhccccCCCCCHHHHHHHHHH
Confidence            9999853                              256689999999988 9999875        889999999999


Q ss_pred             HHHHHHHHHHhC---CeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE------EEE
Q 013230          279 VTAGLAVAEAAY---EFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI------FFL  349 (447)
Q Consensus       279 il~gL~ylH~~~---~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~------i~~  349 (447)
                      |+.||+|||+ .   ||+||||||+|||++.++                    .+||+|||+|+.......      ...
T Consensus       140 i~~~l~~lH~-~~~~~ivH~Dlkp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~gt  198 (326)
T 3uim_A          140 SARGLAYLHD-HCDPKIIHRDVKAANILLDEEF--------------------EAVVGDFGLAKLMDYKDTHVTTAVRGT  198 (326)
T ss_dssp             HHHHHHHHHH-SSSSCEECCCCSGGGEEECTTC--------------------CEEECCCSSCEECCSSSSCEECCCCSC
T ss_pred             HHHHHHHHHh-CCCCCeEeCCCchhhEEECCCC--------------------CEEeccCccccccCcccccccccccCC
Confidence            9999999999 8   999999999999999887                    799999999987643321      123


Q ss_pred             ecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhH--------HHHHHHHHHhhcc---------CCCCCccc
Q 013230          350 DLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVL--------WLVYLVDMLLLKK---------TFDRSSKD  412 (447)
Q Consensus       350 ~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~--------~~~~~~~~l~~~~---------~~~~~~~~  412 (447)
                      ..|++||.+.+...+.+.|||+ +|.+.+++++|..|+....        ........+....         ....+...
T Consensus       199 ~~y~aPE~~~~~~~~~~~Di~s-lG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (326)
T 3uim_A          199 IGHIAPEYLSTGKSSEKTDVFG-YGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEE  277 (326)
T ss_dssp             GGGCCHHHHHHSEECHHHHHHH-HHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTSCCHHH
T ss_pred             cCccCHHHhccCCCCccccchh-HHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhcChhhccccCHHH
Confidence            3488999887767777779999 9999999999999885321        1111111110000         01112345


Q ss_pred             hHHHHHHHHHhcccc-----CHHHHHcCCC
Q 013230          413 ERDLRSLKKRLDKYN-----SAKEAIFDPF  437 (447)
Q Consensus       413 s~~l~dLl~~mL~~d-----sa~elL~HPf  437 (447)
                      +.++.+|+.+||..|     |+.|+++|-.
T Consensus       278 ~~~l~~li~~cl~~dP~~Rps~~ell~~L~  307 (326)
T 3uim_A          278 VEQLIQVALLCTQSSPMERPKMSEVVRMLE  307 (326)
T ss_dssp             HHHHHHHHHHHTCSCGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCCccCCCHHHHHHHhc
Confidence            689999999999999     9999998853

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.97  E-value=1.9e-31  Score=267.96  Aligned_cols=226  Identities=15%  Similarity=0.047  Sum_probs=168.3

Q ss_pred             CcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          134 PENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      |++.++||+|+||.||+|.           .||+|++...           ....+.+|+.+++.+++.         .|
T Consensus        67 y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-----------~~~~~~~e~~~~~~l~~~---------~~  126 (365)
T 3e7e_A           67 VYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA-----------NPWEFYIGTQLMERLKPS---------MQ  126 (365)
T ss_dssp             EEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC-----------CHHHHHHHHHHHHHSCGG---------GG
T ss_pred             EEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC-----------ChhHHHHHHHHHHHhhhh---------hh
Confidence            5999999999999999992           3999987633           235678999999999753         34


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------CCHHHHH
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------LNINEAR  273 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------l~~~~~~  273 (447)
                      ++|+.+++++..                              .+..|+|||||.|| +|.+++.         +++..++
T Consensus       127 ~~iv~~~~~~~~------------------------------~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~l~~~~~~  175 (365)
T 3e7e_A          127 HMFMKFYSAHLF------------------------------QNGSVLVGELYSYG-TLLNAINLYKNTPEKVMPQGLVI  175 (365)
T ss_dssp             GGBCCEEEEEEC------------------------------SSCEEEEECCCCSC-BHHHHHHHHHTSTTCSCCHHHHH
T ss_pred             hhhhhhheeeec------------------------------CCCcEEEEeccCCC-cHHHHHHHhhcccccCCCHHHHH
Confidence            559999999654                              56789999999988 9999873         8999999


Q ss_pred             HHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC--CCCEE----
Q 013230          274 SLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT--GEDIF----  347 (447)
Q Consensus       274 ~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~--~~g~i----  347 (447)
                      .++.||+.||+|||+ +|||||||||+|||++.......         ........+||+|||+|+...  ..+..    
T Consensus       176 ~i~~qi~~~L~~lH~-~~ivHrDiKp~NIll~~~~~~~~---------~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~  245 (365)
T 3e7e_A          176 SFAMRMLYMIEQVHD-CEIIHGDIKPDNFILGNGFLEQD---------DEDDLSAGLALIDLGQSIDMKLFPKGTIFTAK  245 (365)
T ss_dssp             HHHHHHHHHHHHHHT-TTEECCCCSGGGEEECGGGTCC---------------CTTEEECCCTTCEEGGGSCTTEEECCS
T ss_pred             HHHHHHHHHHHHHhh-CCeecCCCCHHHEEecccccCcc---------ccccccCCEEEeeCchhhhhhccCCCceeeee
Confidence            999999999999999 99999999999999988200000         000001179999999997643  22222    


Q ss_pred             -EEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhccc
Q 013230          348 -FLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKY  426 (447)
Q Consensus       348 -~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~  426 (447)
                       ....|++||++.+...+.+.|||+ +|++.+++++|..|+......     .......++. ...++.+.+++.+||..
T Consensus       246 ~gt~~y~aPE~~~~~~~~~~~Diws-lG~il~elltg~~pf~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~l~~  318 (365)
T 3e7e_A          246 CETSGFQCVEMLSNKPWNYQIDYFG-VAATVYCMLFGTYMKVKNEGG-----ECKPEGLFRR-LPHLDMWNEFFHVMLNI  318 (365)
T ss_dssp             SCTTSCCCHHHHTTCCBSTHHHHHH-HHHHHHHHHHSSCCCEEEETT-----EEEECSCCTT-CSSHHHHHHHHHHHHCC
T ss_pred             cCCCCCCChHHhcCCCCCccccHHH-HHHHHHHHHhCCCccccCCCC-----ceeechhccc-cCcHHHHHHHHHHHcCC
Confidence             234489999999988888889999 999999999999887532110     0000111221 12467788888888888


Q ss_pred             c
Q 013230          427 N  427 (447)
Q Consensus       427 d  427 (447)
                      +
T Consensus       319 ~  319 (365)
T 3e7e_A          319 P  319 (365)
T ss_dssp             C
T ss_pred             C
Confidence            7

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.97  E-value=9.6e-32  Score=263.74  Aligned_cols=235  Identities=17%  Similarity=0.192  Sum_probs=176.9

Q ss_pred             CcceEEeccccceEEEEec---------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          134 PENIVKVGEGTFGEAFLAG---------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~---------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      |++.+.||+|+||.||+|+         .||+|++....      ......+.+.+|+.+++.++|        ||    
T Consensus        36 y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~------~~~~~~~~~~~e~~~l~~l~h--------~~----   97 (313)
T 3brb_A           36 LILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDN------SSQREIEEFLSEAACMKDFSH--------PN----   97 (313)
T ss_dssp             EEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---C------CCHHHHHHHHHHHHHHHTCCC--------TT----
T ss_pred             eeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccc------cchhHHHHHHHHHHHHhcCCC--------CC----
Confidence            4999999999999999985         38999887542      223344678999999999988        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----------CCHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----------LNINEARS  274 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----------l~~~~~~~  274 (447)
                      |+++++++...+.                         ......|+||||+.+| +|.+++.          +++..++.
T Consensus        98 iv~~~~~~~~~~~-------------------------~~~~~~~~v~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~  151 (313)
T 3brb_A           98 VIRLLGVCIEMSS-------------------------QGIPKPMVILPFMKYG-DLHTYLLYSRLETGPKHIPLQTLLK  151 (313)
T ss_dssp             BCCCCEEEEC--------------------------------CEEEEEECCTTC-BHHHHHHHTTBTTSCCCCCHHHHHH
T ss_pred             eeeeeEEEeeccc-------------------------cCCcccEEEEecccCC-CHHHHHHHhhhhcCCccCCHHHHHH
Confidence            9999999654221                         0123579999999988 9998872          89999999


Q ss_pred             HHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----E--E
Q 013230          275 LLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----I--F  347 (447)
Q Consensus       275 i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~--i  347 (447)
                      ++.||+.||.|||+ .||+||||||+|||++.++                    .+||+|||+++......     .  .
T Consensus       152 i~~qi~~aL~~LH~-~~ivH~dikp~NIli~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~  210 (313)
T 3brb_A          152 FMVDIALGMEYLSN-RNFLHRDLAARNCMLRDDM--------------------TVCVADFGLSKKIYSGDYYRQGRIAK  210 (313)
T ss_dssp             HHHHHHHHHHHHHT-TTCCCCCCSGGGEEECTTS--------------------CEEECSCSCC----------------
T ss_pred             HHHHHHHHHHHHHh-CCcccCCCCcceEEEcCCC--------------------cEEEeecCcceecccccccCcccccC
Confidence            99999999999999 9999999999999999887                    79999999998754331     1  1


Q ss_pred             EEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhccc
Q 013230          348 FLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKY  426 (447)
Q Consensus       348 ~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~  426 (447)
                      ....|++||.+.+.....+.|||+ +|.+.++++. +..|+............. .....+.+..+++++.+||.+||..
T Consensus       211 ~~~~y~aPE~~~~~~~~~~~Di~s-lG~il~el~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~l~~  288 (313)
T 3brb_A          211 MPVKWIAIESLADRVYTSKSDVWA-FGVTMWEIATRGMTPYPGVQNHEMYDYLL-HGHRLKQPEDCLDELYEIMYSCWRT  288 (313)
T ss_dssp             CCGGGSCHHHHHSSCCCHHHHHHH-HHHHHHHHHTTSCCSSTTCCGGGHHHHHH-TTCCCCCBTTCCHHHHHHHHHTTCS
T ss_pred             CCccccCchhhcCCCccchhhhHH-HHHHHHHHHhcCCCCCccCCHHHHHHHHH-cCCCCCCCccccHHHHHHHHHHcCC
Confidence            122488999998877777889999 9999999999 777775543222222222 2233444567889999999999999


Q ss_pred             c-----CHHHHHcC
Q 013230          427 N-----SAKEAIFD  435 (447)
Q Consensus       427 d-----sa~elL~H  435 (447)
                      |     |+.++++|
T Consensus       289 dp~~Rps~~~l~~~  302 (313)
T 3brb_A          289 DPLDRPTFSVLRLQ  302 (313)
T ss_dssp             SGGGSCCHHHHHHH
T ss_pred             ChhhCcCHHHHHHH
Confidence            9     99998865

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=3.5e-31  Score=261.73  Aligned_cols=234  Identities=17%  Similarity=0.239  Sum_probs=173.9

Q ss_pred             hhhccCCCcceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhc--cccccCCCCCCC
Q 013230          127 LFSKYSDPENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL--NHLRRNEGDTLN  200 (447)
Q Consensus       127 ~~~~y~~~~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L--~h~~~~~~~~~n  200 (447)
                      ..++|   +++++||+|+||.||+|+    .||+|++....           .....+|..++..+  +|        ||
T Consensus        35 ~~~~y---~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~-----------~~~~~~e~~~~~~~~~~h--------~~   92 (337)
T 3mdy_A           35 IAKQI---QMVKQIGKGRYGEVWMGKWRGEKVAVKVFFTTE-----------EASWFRETEIYQTVLMRH--------EN   92 (337)
T ss_dssp             HHHHC---EEEEEEEEETTEEEEEEEETTEEEEEEEEEGGG-----------HHHHHHHHHHHTSTTCCC--------TT
T ss_pred             cccce---EEEeEeecCCCeEEEEEEECCceEEEEEEeccc-----------cchhhhHHHHHHHHhhcC--------CC
Confidence            34556   999999999999999997    39999886321           13445666666554  55        77


Q ss_pred             cccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHH
Q 013230          201 ACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLV  277 (447)
Q Consensus       201 ~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~  277 (447)
                          |+++++++.....                          ....+|+||||+.+| +|.+++.   +++..++.++.
T Consensus        93 ----i~~~~~~~~~~~~--------------------------~~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~i~~  141 (337)
T 3mdy_A           93 ----ILGFIAADIKGTG--------------------------SWTQLYLITDYHENG-SLYDYLKSTTLDAKSMLKLAY  141 (337)
T ss_dssp             ----BCCEEEEEEESCG--------------------------GGCEEEEEECCCTTC-BHHHHHHHCCBCHHHHHHHHH
T ss_pred             ----eeeEEEEEccCCC--------------------------CCCceEEEEeccCCC-cHHHHhhccCCCHHHHHHHHH
Confidence                9999998765211                          125689999999988 9999987   99999999999


Q ss_pred             HHHHHHHHHHHhC--------CeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE---
Q 013230          278 QVTAGLAVAEAAY--------EFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI---  346 (447)
Q Consensus       278 Qil~gL~ylH~~~--------~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~---  346 (447)
                      |++.||+|||+ .        ||+||||||+|||++.++                    .+||+|||+|+.......   
T Consensus       142 ~i~~~l~~lH~-~~~~~~~~~~ivH~Dikp~Nill~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~  200 (337)
T 3mdy_A          142 SSVSGLCHLHT-EIFSTQGKPAIAHRDLKSKNILVKKNG--------------------TCCIADLGLAVKFISDTNEVD  200 (337)
T ss_dssp             HHHHHHHHHHS-CBCSTTCBCCEECSCCCGGGEEECTTS--------------------CEEECCCTTCEECC-------
T ss_pred             HHHHHHHHHHH-hhhhhccCCCEEecccchHHEEECCCC--------------------CEEEEeCCCceeecccccccc
Confidence            99999999998 7        999999999999999887                    799999999976544321   


Q ss_pred             ------EEEecCCCCCCCCCCCCCch------HHHHHhhccCCcccccC----------CCCCChhH----HHHHHHHHH
Q 013230          347 ------FFLDLSQDPELFSGPKGDKQ------FDTYRKMKKVTEDQWEG----------SFPKTNVL----WLVYLVDML  400 (447)
Q Consensus       347 ------i~~~~~~~pelf~g~~~~~~------~di~s~lg~~~~~~~~~----------~~p~~~~~----~~~~~~~~l  400 (447)
                            .....|++||++.+......      .|||+ +|.+.++++++          ..|+....    .........
T Consensus       201 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Diws-lG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  279 (337)
T 3mdy_A          201 IPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYS-FGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIV  279 (337)
T ss_dssp             --CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHH-HHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHH
T ss_pred             CCCCCCccCcceeChhhcccccCCccccCccccchHH-HHHHHHHHHhccCcccccccccccHhhhcCCCCchhhhHHHH
Confidence                  22345899999987655554      69999 99999999988          45554320    111112222


Q ss_pred             hhc---cCCCC---CccchHHHHHHHHHhcccc-----CHHHHHcC
Q 013230          401 LLK---KTFDR---SSKDERDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       401 ~~~---~~~~~---~~~~s~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      ...   ..++.   ....++++.+||.+||..|     |+.|+++|
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  325 (337)
T 3mdy_A          280 CIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKT  325 (337)
T ss_dssp             TTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred             hhhccCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHH
Confidence            111   11111   1256788999999999999     99999875

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.97  E-value=4.8e-32  Score=275.83  Aligned_cols=235  Identities=15%  Similarity=0.141  Sum_probs=176.9

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||.||+|++      ||+|++....       .....+.+.+|+.+++.++|        ||    |++
T Consensus        11 y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------pn----Iv~   71 (396)
T 4eut_A           11 WLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNIS-------FLRPVDVQMREFEVLKKLNH--------KN----IVK   71 (396)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGG-------GGSCHHHHHHHHHHHHHCCC--------TT----BCC
T ss_pred             eEEEEEEEcCCCeEEEEEEECCCCcEEEEEEecccc-------ccchHHHHHHHHHHHHhcCC--------CC----CCe
Confidence            49999999999999999973      9999987432       22334677899999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------CCHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------LNINEARSLLVQVT  280 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------l~~~~~~~i~~Qil  280 (447)
                      +++++...+                            ....|+|||||.|| +|.+++.       +++..++.++.||+
T Consensus        72 ~~~~~~~~~----------------------------~~~~~lv~e~~~~g-~L~~~l~~~~~~~~l~~~~~~~i~~qi~  122 (396)
T 4eut_A           72 LFAIEEETT----------------------------TRHKVLIMEFCPCG-SLYTVLEEPSNAYGLPESEFLIVLRDVV  122 (396)
T ss_dssp             EEEEEECTT----------------------------TCCEEEEECCCTTE-EHHHHTTSGGGTTCCCHHHHHHHHHHHH
T ss_pred             EEEeeccCC----------------------------CCeeEEEEecCCCC-CHHHHHHhhhcccCCCHHHHHHHHHHHH
Confidence            999865311                            34689999999988 9999876       89999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPE  356 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pe  356 (447)
                      .||+|||+ .||+||||||+|||+.....                ....+||+|||+|+......    ......|++||
T Consensus       123 ~aL~~LH~-~~ivH~Dlkp~NIll~~~~~----------------~~~~~kL~DFG~a~~~~~~~~~~~~~gt~~y~aPE  185 (396)
T 4eut_A          123 GGMNHLRE-NGIVHRNIKPGNIMRVIGED----------------GQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPD  185 (396)
T ss_dssp             HHHHHHHH-TTEECCCCCGGGEEEEECTT----------------SCEEEEECCGGGCEECCCGGGSSCSSSCCTTCCHH
T ss_pred             HHHHHHHH-CCEEECCcCHHHEEEeecCC----------------CceeEEEecCCCceEccCCCccccccCCccccCHH
Confidence            99999999 99999999999999832210                00169999999998764432    22334588888


Q ss_pred             CCCC--------CCCCchHHHHHhhccCCcccccCCCCCChh----HHHHHHHHHHhhcc-------------------C
Q 013230          357 LFSG--------PKGDKQFDTYRKMKKVTEDQWEGSFPKTNV----LWLVYLVDMLLLKK-------------------T  405 (447)
Q Consensus       357 lf~g--------~~~~~~~di~s~lg~~~~~~~~~~~p~~~~----~~~~~~~~~l~~~~-------------------~  405 (447)
                      ++.+        ...+.+.|||+ +|++.++++.|..||...    .....+...+...+                   .
T Consensus       186 ~~~~~~~~~~~~~~~~~~~DiwS-lG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  264 (396)
T 4eut_A          186 MYERAVLRKDHQKKYGATVDLWS-IGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGD  264 (396)
T ss_dssp             HHHHHCC--CHHHHHHHHHHHHH-HHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESS
T ss_pred             HhhccccccccccCCCcHHHHHH-HHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCCcccchhheeccCCCcccCcc
Confidence            8754        22334569999 999999999999887521    12223333332221                   1


Q ss_pred             CC----CCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          406 FD----RSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       406 ~~----~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      ++    .....+..+.+||++||++|     |++|+++
T Consensus       265 ~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~  302 (396)
T 4eut_A          265 MPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFA  302 (396)
T ss_dssp             CCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHH
T ss_pred             CCcccccchHHHhhchHHHHHhhccChhhhccHHHHHH
Confidence            11    12456789999999999999     8888754

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.97  E-value=9e-32  Score=265.28  Aligned_cols=231  Identities=16%  Similarity=0.174  Sum_probs=181.4

Q ss_pred             CCcceEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          133 DPENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      +|++.+.||+|+||.||+|+     .||+|++....        ....+.+.+|+.+++.++|        ||    |++
T Consensus        40 ~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~h--------~~----iv~   99 (321)
T 2qkw_B           40 NFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPES--------SQGIEEFETEIETLSFCRH--------PH----LVS   99 (321)
T ss_dssp             CCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCC--------SSHHHHHHHHHHGGGSCCC--------TT----BCC
T ss_pred             ccCccceeecCCCeeEEEEEECCCCEEEEEEecccC--------hHHHHHHHHHHHHHHhCCC--------CC----Eee
Confidence            45999999999999999996     49999876432        2234678999999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQV  279 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Qi  279 (447)
                      +++++                              ...+..|+||||+.+| +|.+++.        +++..++.++.||
T Consensus       100 ~~~~~------------------------------~~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~i~~~i  148 (321)
T 2qkw_B          100 LIGFC------------------------------DERNEMILIYKYMENG-NLKRHLYGSDLPTMSMSWEQRLEICIGA  148 (321)
T ss_dssp             EEEEC------------------------------CCTTCCEEEEECCTTC-BTGGGSSSSCCCSCCCCHHHHHHHHHHH
T ss_pred             EEEEE------------------------------cCCCeEEEEEEcCCCC-cHHHHHhccCCCccccCHHHHHHHHHHH
Confidence            99983                              2356799999999988 9998874        7899999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-------CEEEEecC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-------DIFFLDLS  352 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-------g~i~~~~~  352 (447)
                      +.||+|||+ .||+||||||+|||++.++                    .+||+|||+++.....       .......|
T Consensus       149 ~~~l~~lH~-~~ivH~dlkp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y  207 (321)
T 2qkw_B          149 ARGLHYLHT-RAIIHRDVKSINILLDENF--------------------VPKITDFGISKKGTELDQTHLSTVVKGTLGY  207 (321)
T ss_dssp             HHHHHHHHH-TTEECSCCCSTTEEECTTC--------------------CEEECCCTTCEECSSSSCCCCBCCCEEETTT
T ss_pred             HHHHHHhcC-CCeecCCCCHHHEEECCCC--------------------CEEEeecccccccccccccccccccCCCccc
Confidence            999999999 9999999999999999887                    7999999999864322       22345669


Q ss_pred             CCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhH------HHHHHHHHHhhc-------cCC--CCCccchHHHH
Q 013230          353 QDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVL------WLVYLVDMLLLK-------KTF--DRSSKDERDLR  417 (447)
Q Consensus       353 ~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~------~~~~~~~~l~~~-------~~~--~~~~~~s~~l~  417 (447)
                      ++||.+.+...+.+.|||+ +|.+.++++++..|+....      ...+........       ...  ......+.++.
T Consensus       208 ~aPE~~~~~~~~~~~Di~s-lG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  286 (321)
T 2qkw_B          208 IDPEYFIKGRLTEKSDVYS-FGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFG  286 (321)
T ss_dssp             CCHHHHHHCBCCTHHHHHH-HHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTCSCHHHHHHHH
T ss_pred             cCHHHhcCCCCCcccchHh-HHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhccccCHHHHHHHH
Confidence            9999997777778889999 9999999999987775321      111111111000       001  11345678999


Q ss_pred             HHHHHhcccc-----CHHHHHcCC
Q 013230          418 SLKKRLDKYN-----SAKEAIFDP  436 (447)
Q Consensus       418 dLl~~mL~~d-----sa~elL~HP  436 (447)
                      +|+.+||..|     |+.|+++|.
T Consensus       287 ~li~~~l~~dP~~Rps~~ell~~L  310 (321)
T 2qkw_B          287 DTAVKCLALSSEDRPSMGDVLWKL  310 (321)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHcCCCcccCcCHHHHHHHH
Confidence            9999999999     999998763

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.97  E-value=1.1e-31  Score=269.73  Aligned_cols=237  Identities=16%  Similarity=0.158  Sum_probs=169.1

Q ss_pred             CcceEEeccccceEEEEec-----------eeEEEEEecCCCcccc---cccccchHHHHHHHHHHHhccccccCCCCCC
Q 013230          134 PENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVN---GEAQKKSEELLEEVVLSWTLNHLRRNEGDTL  199 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~---~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~  199 (447)
                      |++.++||+|+||.||+|.           .||+|++.........   -...........|+..+..++|        +
T Consensus        37 y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h--------~  108 (364)
T 3op5_A           37 WKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKY--------L  108 (364)
T ss_dssp             EEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSC--------C
T ss_pred             EEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccC--------C
Confidence            4999999999999999994           3899988754210000   0000011123334444444444        6


Q ss_pred             CcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHH
Q 013230          200 NACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARS  274 (447)
Q Consensus       200 n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~  274 (447)
                      |    |+++++++.....                          .....||||||+ || +|.+++.     +++..++.
T Consensus       109 ~----iv~~~~~~~~~~~--------------------------~~~~~~lv~e~~-g~-~L~~~~~~~~~~l~~~~~~~  156 (364)
T 3op5_A          109 G----VPKYWGSGLHDKN--------------------------GKSYRFMIMDRF-GS-DLQKIYEANAKRFSRKTVLQ  156 (364)
T ss_dssp             C----SCCEEEEEEEEET--------------------------TEEEEEEEEECE-EE-EHHHHHHHTTSCCCHHHHHH
T ss_pred             C----CCeEEeeeeeccC--------------------------CcceEEEEEeCC-CC-CHHHHHHhccCCCCHHHHHH
Confidence            6    9999999765221                          124589999999 77 9999875     89999999


Q ss_pred             HHHHHHHHHHHHHHhCCeeeccCCCCCEEEe--cCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-------
Q 013230          275 LLVQVTAGLAVAEAAYEFEHRDLHWGNVLLS--RNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-------  345 (447)
Q Consensus       275 i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~--~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-------  345 (447)
                      ++.||+.||+|||+ .||+||||||+|||++  .++                    .+||+|||+|+.....+       
T Consensus       157 i~~qi~~~l~~lH~-~~iiHrDlkp~Nill~~~~~~--------------------~~kl~DFG~a~~~~~~~~~~~~~~  215 (364)
T 3op5_A          157 LSLRILDILEYIHE-HEYVHGDIKASNLLLNYKNPD--------------------QVYLVDYGLAYRYCPEGVHKAYAA  215 (364)
T ss_dssp             HHHHHHHHHHHHHH-TTEECCCCCGGGEEEESSCTT--------------------CEEECCCTTCEESSGGGCCCCSSC
T ss_pred             HHHHHHHHHHHHHH-CCeEEecCCHHHEEEecCCCC--------------------eEEEEECCcceecccCCccccccc
Confidence            99999999999999 9999999999999999  554                    79999999998754321       


Q ss_pred             -----EEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhH----HHHHHHHHHhh------ccCCCCCc
Q 013230          346 -----IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVL----WLVYLVDMLLL------KKTFDRSS  410 (447)
Q Consensus       346 -----~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~----~~~~~~~~l~~------~~~~~~~~  410 (447)
                           ......|++||.+.+...+.+.|||+ +|.+.+++++|..||....    +..........      ...++ ..
T Consensus       216 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s-lG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  293 (364)
T 3op5_A          216 DPKRCHDGTIEFTSIDAHNGVAPSRRGDLEI-LGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFP-AA  293 (364)
T ss_dssp             CSSCCCCCCTTTCCHHHHTTCCCCHHHHHHH-HHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHCHHHHHHHHSC-TT
T ss_pred             CcccccCCCCCccCHHHhCCCCCCchhhHHH-HHHHHHHHHhCCCCccccccCHHHHHHHHHHhhhhHHHHHHHhcc-cc
Confidence                 11344589999999988888889999 9999999999999997421    11111100000      01111 24


Q ss_pred             cchHHHHHHHHHhcccc-----CHHHHH
Q 013230          411 KDERDLRSLKKRLDKYN-----SAKEAI  433 (447)
Q Consensus       411 ~~s~~l~dLl~~mL~~d-----sa~elL  433 (447)
                      ..++++.+|+.+||..|     |+++++
T Consensus       294 ~~~~~~~~li~~cl~~~p~~RP~~~~l~  321 (364)
T 3op5_A          294 NAPGEIAKYMETVKLLDYTEKPLYENLR  321 (364)
T ss_dssp             CCCHHHHHHHHHHHTCCTTCCCCHHHHH
T ss_pred             cCHHHHHHHHHHHhcCCCCCCCCHHHHH
Confidence            56889999999999999     777765

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.97  E-value=2e-31  Score=258.89  Aligned_cols=231  Identities=14%  Similarity=0.092  Sum_probs=175.4

Q ss_pred             CcceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||.||+|+      .||+|++....          ....+.+|+.+++.+.+.       +|    ++.
T Consensus        12 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----------~~~~~~~e~~~~~~l~~~-------~~----i~~   70 (298)
T 1csn_A           12 YKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS----------DAPQLRDEYRTYKLLAGC-------TG----IPN   70 (298)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT----------TSCCHHHHHHHHHHTTTC-------TT----CCC
T ss_pred             eEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC----------ccHHHHHHHHHHHHHhcC-------CC----CCe
Confidence            5999999999999999997      39999886432          113468899999999431       55    788


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++..                              ....|+||||+ +| +|.+++.     +++..++.++.||+.|
T Consensus        71 ~~~~~~~------------------------------~~~~~lv~e~~-~~-~L~~~l~~~~~~~~~~~~~~i~~qi~~~  118 (298)
T 1csn_A           71 VYYFGQE------------------------------GLHNVLVIDLL-GP-SLEDLLDLCGRKFSVKTVAMAAKQMLAR  118 (298)
T ss_dssp             EEEEEEE------------------------------TTEEEEEEECC-CC-BHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred             EEeecCC------------------------------CceeEEEEEec-CC-CHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence            8877543                              56789999999 67 9999886     8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------------CEEEEe
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------------DIFFLD  350 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------------g~i~~~  350 (447)
                      |+|||+ .||+||||||+|||++.++.               ..+..+||+|||+|+.....            ......
T Consensus       119 l~~lH~-~~ivH~Dlkp~NIl~~~~~~---------------~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~  182 (298)
T 1csn_A          119 VQSIHE-KSLVYRDIKPDNFLIGRPNS---------------KNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTA  182 (298)
T ss_dssp             HHHHHT-TTEECCCCCGGGEEECCSSS---------------TTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCT
T ss_pred             HHHHHh-CCEecCCCCHHHEEeccCCC---------------CCCCeEEEEECccccccccccccccccccCccCCCCCc
Confidence            999999 99999999999999987751               01124999999999875443            112334


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChh---HHHHHHHHHHhhccCCC---CCccchHHHHHHHHHhc
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV---LWLVYLVDMLLLKKTFD---RSSKDERDLRSLKKRLD  424 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~---~~~~~~~~~l~~~~~~~---~~~~~s~~l~dLl~~mL  424 (447)
                      .|++||.+.+...+.+.|||+ +|.+.++++.|..|+...   ................+   ....+++++++|+.+||
T Consensus       183 ~y~aPE~~~~~~~~~~~Di~s-lG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l  261 (298)
T 1csn_A          183 RYMSINTHLGREQSRRDDLEA-LGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYAR  261 (298)
T ss_dssp             TTCCHHHHTTCCCCHHHHHHH-HHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHH
T ss_pred             ccCCchhhcCCCCChHHHHHH-HHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCccHHHHHhhCcHHHHHHHHHHh
Confidence            589999998877777889999 999999999999998652   11111111111111111   12357889999999999


Q ss_pred             ccc-----CHHHHHc
Q 013230          425 KYN-----SAKEAIF  434 (447)
Q Consensus       425 ~~d-----sa~elL~  434 (447)
                      ..|     |++++++
T Consensus       262 ~~dp~~RP~~~~l~~  276 (298)
T 1csn_A          262 NLAFDATPDYDYLQG  276 (298)
T ss_dssp             HCCTTCCCCHHHHHH
T ss_pred             cCCcccCCCHHHHHH
Confidence            999     7877753

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.97  E-value=2.4e-31  Score=256.55  Aligned_cols=226  Identities=19%  Similarity=0.229  Sum_probs=175.7

Q ss_pred             CcceEEeccccceEEEEece----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeee
Q 013230          134 PENIVKVGEGTFGEAFLAGN----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMF  209 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~  209 (447)
                      |++++.||+|+||.||+|+.    ||+|++....          ..+.+.+|+.+++.++|        ||    |++++
T Consensus        23 y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~----------~~~~~~~E~~~l~~l~h--------~~----iv~~~   80 (278)
T 1byg_A           23 LKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA----------TAQAFLAEASVMTQLRH--------SN----LVQLL   80 (278)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTEEEEEEECCCCC------------HHHHHTHHHHTTCCC--------TT----BCCEE
T ss_pred             ceEEeEEecCCCceEEEEEEcCCEEEEEEecchh----------HHHHHHHHHHHHHhCCC--------CC----EeeEE
Confidence            49999999999999999973    9999876321          33678999999999988        88    99999


Q ss_pred             eEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHHH
Q 013230          210 EIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAGL  283 (447)
Q Consensus       210 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~gL  283 (447)
                      +++..                             ..+.+|+||||+.+| +|.+++.      +++..++.++.|++.||
T Consensus        81 ~~~~~-----------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l  130 (278)
T 1byg_A           81 GVIVE-----------------------------EKGGLYIVTEYMAKG-SLVDYLRSRGRSVLGGDCLLKFSLDVCEAM  130 (278)
T ss_dssp             EEECC-----------------------------C--CCEEEECCCTTE-EHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             EEEEc-----------------------------CCCceEEEEecCCCC-CHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence            98432                             234689999999988 9999886      79999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE--EEEecCCCCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI--FFLDLSQDPELFSGP  361 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~--i~~~~~~~pelf~g~  361 (447)
                      +|||+ .||+||||||+|||++.++                    .+||+|||+++.......  .....|++||.+.+.
T Consensus       131 ~~lH~-~~i~H~dlkp~Nil~~~~~--------------------~~~l~Dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~  189 (278)
T 1byg_A          131 EYLEG-NNFVHRDLAARNVLVSEDN--------------------VAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREK  189 (278)
T ss_dssp             HHHHH-TTCCCSCCSGGGEEECTTS--------------------CEEECCCCC------------CCTTTSCHHHHHHC
T ss_pred             HHHHh-CCccccCCCcceEEEeCCC--------------------cEEEeeccccccccccccCCCccccccCHHHhCCC
Confidence            99999 9999999999999999887                    799999999986544321  122348899998877


Q ss_pred             CCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          362 KGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       362 ~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      ....+.|+|+ +|.+.+++++ +..|+........... +......+.+...++++++||++||..|     |+.|+++
T Consensus       190 ~~~~~~Di~s-lG~il~~l~t~g~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~  266 (278)
T 1byg_A          190 KFSTKSDVWS-FGILLWEIYSFGRVPYPRIPLKDVVPR-VEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLRE  266 (278)
T ss_dssp             CCCHHHHHHH-HHHHHHHHHTTSCCSCTTSCGGGHHHH-HTTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCchhcHHH-HHHHHHHHHhCCCCCCCCCCHHHHHHH-HhcCCCCCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHH
Confidence            7777789999 9999999998 8888865433222222 2222234445678999999999999999     8888864

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.97  E-value=2e-31  Score=261.76  Aligned_cols=233  Identities=19%  Similarity=0.174  Sum_probs=179.9

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|++      ||+|++...        .....+.+.+|+.+++.++|        ||    |++
T Consensus        31 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--------~~~~~~~~~~E~~~l~~l~h--------~~----iv~   90 (317)
T 2buj_A           31 YLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCH--------EQQDREEAQREADMHRLFNH--------PN----ILR   90 (317)
T ss_dssp             EEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEES--------SHHHHHHHHHHHHHHHTCCC--------TT----BCC
T ss_pred             EEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecC--------CHHHHHHHHHHHHHHhhcCC--------CC----eee
Confidence            49999999999999999973      999988643        22344678899999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLVQV  279 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~Qi  279 (447)
                      +++++.....                          .....|+||||+.+| +|.+++.        +++..++.++.||
T Consensus        91 ~~~~~~~~~~--------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~i~~qi  143 (317)
T 2buj_A           91 LVAYCLRERG--------------------------AKHEAWLLLPFFKRG-TLWNEIERLKDKGNFLTEDQILWLLLGI  143 (317)
T ss_dssp             CCEEEEEEET--------------------------TEEEEEEEEECCTTC-BHHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred             EEEEEEeccC--------------------------CCceeEEEEEeCCCC-cHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            9999764211                          134689999999988 9988764        8999999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC--------------
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED--------------  345 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g--------------  345 (447)
                      +.||+|||+ .||+||||||+|||++.++                    .+||+|||+++......              
T Consensus       144 ~~~L~~LH~-~~ivH~dlkp~NIl~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~  202 (317)
T 2buj_A          144 CRGLEAIHA-KGYAHRDLKPTNILLGDEG--------------------QPVLMDLGSMNQACIHVEGSRQALTLQDWAA  202 (317)
T ss_dssp             HHHHHHHHH-TTEECCCCCGGGEEECTTS--------------------CEEECCCSSCEESCEEEESHHHHHHHHHHHH
T ss_pred             HHHHHHHHh-CCcccCCCCHHHEEEcCCC--------------------CEEEEecCcchhccccccccccccccccccc
Confidence            999999999 9999999999999999887                    79999999987653210              


Q ss_pred             EEEEecCCCCCCCCCCC---CCchHHHHHhhccCCcccccCCCCCChhHHHH-HHHHHHhhccCCCCCccchHHHHHHHH
Q 013230          346 IFFLDLSQDPELFSGPK---GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLV-YLVDMLLLKKTFDRSSKDERDLRSLKK  421 (447)
Q Consensus       346 ~i~~~~~~~pelf~g~~---~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~-~~~~~l~~~~~~~~~~~~s~~l~dLl~  421 (447)
                      ......|++||++.+..   ...+.|||+ +|.+.++++.+..|+....... ...........++.....++++.+||.
T Consensus       203 ~~gt~~y~aPE~~~~~~~~~~~~~~Di~s-lG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  281 (317)
T 2buj_A          203 QRCTISYRAPELFSVQSHCVIDERTDVWS-LGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSIPQSPRHSSALWQLLN  281 (317)
T ss_dssp             HHSCGGGCCGGGSSCCSEEEECTHHHHHH-HHHHHHHHHHSSCTTHHHHHTTSCHHHHHHCC--CCCCTTSCHHHHHHHH
T ss_pred             ccCCcccCCHhHhccCCCcCCCchhhHHH-HHHHHHHHHhCCCChhhhhcccchhhHHhhccCCCCccccCCHHHHHHHH
Confidence            00134489999997654   355779999 9999999999999985421110 111112222344545678999999999


Q ss_pred             Hhcccc-----CHHHHHcC
Q 013230          422 RLDKYN-----SAKEAIFD  435 (447)
Q Consensus       422 ~mL~~d-----sa~elL~H  435 (447)
                      +||..|     |+.++++|
T Consensus       282 ~~l~~dp~~Rps~~~ll~~  300 (317)
T 2buj_A          282 SMMTVDPHQRPHIPLLLSQ  300 (317)
T ss_dssp             HHTCSSGGGSCCHHHHHHH
T ss_pred             HHhhcChhhCCCHHHHHHH
Confidence            999999     99999876

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.97  E-value=1.3e-31  Score=258.10  Aligned_cols=238  Identities=21%  Similarity=0.176  Sum_probs=182.7

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||.||+|++      ||+|++....            +.+.+|+.+++.++|        ||    |++
T Consensus        13 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------------~~~~~e~~~l~~l~h--------~~----i~~   68 (284)
T 2a19_B           13 FKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN------------EKAEREVKALAKLDH--------VN----IVH   68 (284)
T ss_dssp             EEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS------------GGGHHHHHHHHHCCC--------TT----BCC
T ss_pred             cceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc------------HHHHHHHHHHHhCCC--------CC----EEE
Confidence            39999999999999999973      9999987432            235789999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +++++......+ ...             ...........+|+||||+.+| +|.+++.      +++..++.++.||+.
T Consensus        69 ~~~~~~~~~~~~-~~~-------------~~~~~~~~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~i~~qi~~  133 (284)
T 2a19_B           69 YNGCWDGFDYDP-ETS-------------SKNSSRSKTKCLFIQMEFCDKG-TLEQWIEKRRGEKLDKVLALELFEQITK  133 (284)
T ss_dssp             EEEEEEEEEEC-----------------------CCEEEEEEEEECCCCSC-BHHHHHHHGGGSCCCHHHHHHHHHHHHH
T ss_pred             EeeeEeccccCc-ccc-------------cccccccCcceEEEEEeccCCC-CHHHHHhhccCCCCCHHHHHHHHHHHHH
Confidence            999865321000 000             0000011234589999999988 9999884      899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPEL  357 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pel  357 (447)
                      ||.|||+ .||+||||||+|||++.++                    .+||+|||+++.....+    ......|++||.
T Consensus       134 ~l~~lH~-~~i~H~dlkp~Nil~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~  192 (284)
T 2a19_B          134 GVDYIHS-KKLINRDLKPSNIFLVDTK--------------------QVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQ  192 (284)
T ss_dssp             HHHHHHH-TTEECSCCSGGGEEEEETT--------------------EEEECCCTTCEESSCCSCCCCCCSCCTTSCHHH
T ss_pred             HHHHHHh-CCeeeccCCHHHEEEcCCC--------------------CEEECcchhheeccccccccccCCcccccChhh
Confidence            9999999 9999999999999999987                    79999999998765432    122345889999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHH
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEA  432 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~el  432 (447)
                      +.+.....+.|+|+ +|.+.++++++..|+....  .. ...+. ...+  +..++.++++||++||..|     |+.|+
T Consensus       193 ~~~~~~~~~~Di~s-lG~il~~l~~~~~~~~~~~--~~-~~~~~-~~~~--~~~~~~~~~~li~~~l~~dp~~Rps~~e~  265 (284)
T 2a19_B          193 ISSQDYGKEVDLYA-LGLILAELLHVCDTAFETS--KF-FTDLR-DGII--SDIFDKKEKTLLQKLLSKKPEDRPNTSEI  265 (284)
T ss_dssp             HHCSCCCTHHHHHH-HHHHHHHHHSCCSSHHHHH--HH-HHHHH-TTCC--CTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             hccCCCcchhhhHH-HHHHHHHHHhcCCcchhHH--HH-HHHhh-cccc--cccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence            98877778889999 9999999999887764321  11 11111 1122  3457889999999999999     99999


Q ss_pred             HcCCCC
Q 013230          433 IFDPFF  438 (447)
Q Consensus       433 L~HPff  438 (447)
                      ++|++.
T Consensus       266 l~~l~~  271 (284)
T 2a19_B          266 LRTLTV  271 (284)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999765

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.97  E-value=1.1e-31  Score=283.87  Aligned_cols=232  Identities=20%  Similarity=0.252  Sum_probs=187.6

Q ss_pred             CcceEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          134 PENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      |++.++||+|+||.||+|+     .||+|++....         ...+.+.+|+.+|+.|+|        +|    ||++
T Consensus       269 ~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~---------~~~~~~~~E~~~l~~l~h--------pn----iv~~  327 (535)
T 2h8h_A          269 LRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT---------MSPEAFLQEAQVMKKLRH--------EK----LVQL  327 (535)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS---------SCHHHHHHHHHHHHHCCC--------TT----BCCE
T ss_pred             hhhheecccCCCeEEEEEEECCCceEEEEEeCCCC---------CCHHHHHHHHHHHHhCCC--------CC----EeeE
Confidence            4899999999999999997     39999987432         134678999999999998        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAG  282 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~g  282 (447)
                      ++++.                               ++.+||||||+.+| +|.+++.      +++..+..++.||+.|
T Consensus       328 ~~~~~-------------------------------~~~~~lv~e~~~~g-sL~~~l~~~~~~~l~~~~~~~i~~qi~~~  375 (535)
T 2h8h_A          328 YAVVS-------------------------------EEPIYIVTEYMSKG-SLLDFLKGETGKYLRLPQLVDMAAQIASG  375 (535)
T ss_dssp             EEEEC-------------------------------SSSCEEEECCCTTE-EHHHHHSHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             EEEEe-------------------------------eccceEeeehhcCC-cHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Confidence            98842                               24589999999988 9999886      8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------CEEEEecCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------DIFFLDLSQDPE  356 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g~i~~~~~~~pe  356 (447)
                      |+|||+ +||+||||||+|||++.++                    .+||+|||+++.....      +......|++||
T Consensus       376 L~~LH~-~~ivHrDlkp~NIll~~~~--------------------~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE  434 (535)
T 2h8h_A          376 MAYVER-MNYVHRDLRAANILVGENL--------------------VCKVADFGLARLIEDNEYTARQGAKFPIKWTAPE  434 (535)
T ss_dssp             HHHHHH-TTCCCSCCSGGGEEECGGG--------------------CEEECCTTSTTTCCCHHHHTTCSTTSCGGGSCHH
T ss_pred             HHHHHh-CCeeCCCCCHhhEEEcCCC--------------------cEEEcccccceecCCCceecccCCcCcccccCHH
Confidence            999999 9999999999999999886                    7999999999865432      211223488999


Q ss_pred             CCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      .+.+...+.+.|||+ +|++.+++++ +..|+........+... ......+.+..++.++.+||.+||..|     |++
T Consensus       435 ~~~~~~~~~~sDvwS-lGv~l~el~t~g~~P~~~~~~~~~~~~i-~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~  512 (535)
T 2h8h_A          435 AALYGRFTIKSDVWS-FGILLTELTTKGRVPYPGMVNREVLDQV-ERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE  512 (535)
T ss_dssp             HHHHCCCCHHHHHHH-HHHHHHHHTTTTCCSSTTCCHHHHHHHH-HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HhccCCCCchhhHHH-HHHHHHHHHhCCCCCCCCCCHHHHHHHH-HcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHH
Confidence            888767777889999 9999999998 78888654433333322 223345556678999999999999999     999


Q ss_pred             HHHcC--CCCCCC
Q 013230          431 EAIFD--PFFSDL  441 (447)
Q Consensus       431 elL~H--Pff~~~  441 (447)
                      ++++.  .+|...
T Consensus       513 ~l~~~L~~~~~~~  525 (535)
T 2h8h_A          513 YLQAFLEDYFTST  525 (535)
T ss_dssp             HHHHHHHTSSCCC
T ss_pred             HHHHHHHHHhhcc
Confidence            88764  566544

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.97  E-value=3.4e-31  Score=285.49  Aligned_cols=224  Identities=20%  Similarity=0.217  Sum_probs=181.5

Q ss_pred             EEeccccceEEEEec--------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeee
Q 013230          138 VKVGEGTFGEAFLAG--------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMF  209 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~--------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~  209 (447)
                      ++||+|+||.||+|.        .||+|+++...      ......+.+.+|+.+|+.|+|        ||    ||+++
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~------~~~~~~~~~~~E~~il~~l~h--------pn----Iv~l~  436 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA------NDPALKDELLAEANVMQQLDN--------PY----IVRMI  436 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGG------GCGGGHHHHHHHHHHHHHCCC--------TT----BCCEE
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEecccc------CCHHHHHHHHHHHHHHHhCCC--------CC----EeeEE
Confidence            579999999999983        39999887432      223345789999999999998        88    99999


Q ss_pred             eEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHH
Q 013230          210 EIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAV  285 (447)
Q Consensus       210 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~y  285 (447)
                      +++.                               .+.+|+|||||.+| +|.+++.    +++..++.++.||+.||+|
T Consensus       437 ~~~~-------------------------------~~~~~lv~E~~~~g-~L~~~l~~~~~l~~~~~~~i~~qi~~~L~y  484 (635)
T 4fl3_A          437 GICE-------------------------------AESWMLVMEMAELG-PLNKYLQQNRHVKDKNIIELVHQVSMGMKY  484 (635)
T ss_dssp             EEEE-------------------------------SSSEEEEEECCTTE-EHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEe-------------------------------cCCEEEEEEccCCC-CHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Confidence            9852                               34589999999988 9999886    8999999999999999999


Q ss_pred             HHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE--------EEEecCCCCCC
Q 013230          286 AEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI--------FFLDLSQDPEL  357 (447)
Q Consensus       286 lH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~--------i~~~~~~~pel  357 (447)
                      ||+ .|||||||||+|||++.++                    .+||+|||+|+.......        .....|++||+
T Consensus       485 LH~-~~iiHrDLkp~NILl~~~~--------------------~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~  543 (635)
T 4fl3_A          485 LEE-SNFVHRDLAARNVLLVTQH--------------------YAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPEC  543 (635)
T ss_dssp             HHH-TTCCCSCCSGGGEEEEETT--------------------EEEECCTTHHHHTTC-------------CGGGSCHHH
T ss_pred             HHH-CCEeCCCCChHhEEEeCCC--------------------CEEEEEcCCccccccCccccccccCCCCceeeeChhh
Confidence            999 9999999999999999987                    799999999987644321        11223899999


Q ss_pred             CCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHH
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKE  431 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~e  431 (447)
                      +.+...+.+.|||+ +|++.+++++ |..|+........... +......+.+..+++++.+||++||..|     |+++
T Consensus       544 ~~~~~~~~~sDvwS-lGv~l~ellt~G~~Pf~~~~~~~~~~~-i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~  621 (635)
T 4fl3_A          544 INYYKFSSKSDVWS-FGVLMWEAFSYGQKPYRGMKGSEVTAM-LEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAA  621 (635)
T ss_dssp             HHHCCCCHHHHHHH-HHHHHHHHHTTTCCSSTTCCHHHHHHH-HHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred             hcCCCCCcHHHHHH-HHHHHHHHHhCCCCCCCCCCHHHHHHH-HHcCCCCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHH
Confidence            98877788889999 9999999998 8889876544333332 3223345556778999999999999999     8888


Q ss_pred             HHc
Q 013230          432 AIF  434 (447)
Q Consensus       432 lL~  434 (447)
                      +++
T Consensus       622 l~~  624 (635)
T 4fl3_A          622 VEL  624 (635)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.97  E-value=6.4e-31  Score=258.04  Aligned_cols=226  Identities=19%  Similarity=0.181  Sum_probs=175.3

Q ss_pred             CCcceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          133 DPENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      +|++.+.||+|+||.||+|+    .||+|++...          ...+.+.+|+.++++++|        ||    |+++
T Consensus         9 ~~~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~----------~~~~~~~~E~~~l~~l~h--------p~----iv~~   66 (307)
T 2eva_A            9 EIEVEEVVGRGAFGVVCKAKWRAKDVAIKQIESE----------SERKAFIVELRQLSRVNH--------PN----IVKL   66 (307)
T ss_dssp             GEEEEEEEECCSSSEEEEEEETTEEEEEEECSST----------THHHHHHHHHHHHHHCCC--------TT----BCCE
T ss_pred             HeeeeeEeecCCCceEEEEEECCeeEEEEEecCh----------hHHHHHHHHHHHHhcCCC--------CC----cCeE
Confidence            45999999999999999997    4999987522          133678999999999988        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------CCHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------LNINEARSLLVQVTA  281 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------l~~~~~~~i~~Qil~  281 (447)
                      ++++                                .+..|+||||+.+| +|.+++.       ++...+..++.||+.
T Consensus        67 ~~~~--------------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~qi~~  113 (307)
T 2eva_A           67 YGAC--------------------------------LNPVCLVMEYAEGG-SLYNVLHGAEPLPYYTAAHAMSWCLQCSQ  113 (307)
T ss_dssp             EEBC--------------------------------TTTTEEEEECCTTC-BHHHHHHCSSSEECCCHHHHHHHHHHHHH
T ss_pred             EEEE--------------------------------cCCcEEEEEcCCCC-CHHHHHhccCCCCccCHHHHHHHHHHHHH
Confidence            9872                                23489999999988 9999886       688999999999999


Q ss_pred             HHHHHHHh--CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--CEEEEecCCCCCC
Q 013230          282 GLAVAEAA--YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--DIFFLDLSQDPEL  357 (447)
Q Consensus       282 gL~ylH~~--~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--g~i~~~~~~~pel  357 (447)
                      ||+|||+.  .||+||||||+|||++.++.                   .+||+|||+++.....  .......|++||.
T Consensus       114 ~l~~LH~~~~~~ivH~dlkp~NIll~~~~~-------------------~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~  174 (307)
T 2eva_A          114 GVAYLHSMQPKALIHRDLKPPNLLLVAGGT-------------------VLKICDFGTACDIQTHMTNNKGSAAWMAPEV  174 (307)
T ss_dssp             HHHHHHTCSSSCCCCCCCSGGGEEEETTTT-------------------EEEECCCCC------------CCTTSSCHHH
T ss_pred             HHHHHHhCCCCCeecCCCChhHEEEeCCCC-------------------EEEEcccccccccccccccCCCCCceEChhh
Confidence            99999973  48999999999999998762                   4899999999765432  1123345899999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhH--HHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVL--WLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~--~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      +.+.....+.|||+ +|.+.+++++|..|+....  ...... ........+....+++++.+||.+||..|     |++
T Consensus       175 ~~~~~~~~~~Di~s-lG~il~el~~g~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  252 (307)
T 2eva_A          175 FEGSNYSEKCDVFS-WGIILWEVITRRKPFDEIGGPAFRIMW-AVHNGTRPPLIKNLPKPIESLMTRCWSKDPSQRPSME  252 (307)
T ss_dssp             HTCCCCCTHHHHHH-HHHHHHHHHHTCCTTTTTCSSHHHHHH-HHHTTCCCCCBTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             hCCCCCCcHHHHHH-HHHHHHHHHHCCCCchhhCccHHHHHH-HHhcCCCCCcccccCHHHHHHHHHHhcCChhhCcCHH
Confidence            99887788889999 9999999999998886421  111111 11122233344568899999999999999     999


Q ss_pred             HHHc
Q 013230          431 EAIF  434 (447)
Q Consensus       431 elL~  434 (447)
                      |+++
T Consensus       253 ell~  256 (307)
T 2eva_A          253 EIVK  256 (307)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9886

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.97  E-value=5.5e-31  Score=260.35  Aligned_cols=230  Identities=16%  Similarity=0.223  Sum_probs=181.3

Q ss_pred             CcceEEeccccceEEEEec----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccc
Q 013230          134 PENIVKVGEGTFGEAFLAG----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACT  203 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~  203 (447)
                      |++++.||+|+||.||+|+          .||+|++...        .....+.+.+|+.+++.++|        ||   
T Consensus        43 y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~--------~~~~~~~~~~E~~~l~~l~h--------~~---  103 (326)
T 2w1i_A           43 LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS--------TEEHLRDFEREIEILKSLQH--------DN---  103 (326)
T ss_dssp             EEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSC--------CSHHHHHHHHHHHHHHTCCC--------TT---
T ss_pred             ceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccC--------CHHHHHHHHHHHHHHHhCCC--------CC---
Confidence            4999999999999999996          2999988643        22344678999999999988        88   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHH
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQ  278 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Q  278 (447)
                       |+++++++...+                            ...+|+||||+.+| +|.+++.     +++..++.++.|
T Consensus       104 -iv~~~~~~~~~~----------------------------~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~i~~q  153 (326)
T 2w1i_A          104 -IVKYKGVCYSAG----------------------------RRNLKLIMEYLPYG-SLRDYLQKHKERIDHIKLLQYTSQ  153 (326)
T ss_dssp             -BCCEEEEECC--------------------------------CCEEEECCCTTC-BHHHHHHHSTTSSCHHHHHHHHHH
T ss_pred             -eeeEEEEEEecC----------------------------CCceEEEEECCCCC-CHHHHHHhcccCCCHHHHHHHHHH
Confidence             999999854311                            34689999999988 9999885     899999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEEE--------Ee
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFF--------LD  350 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i~--------~~  350 (447)
                      |+.||+|||+ .||+||||||+|||++.++                    .+||+|||+|+.........        ..
T Consensus       154 i~~aL~~LH~-~~ivH~dikp~NIli~~~~--------------------~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~  212 (326)
T 2w1i_A          154 ICKGMEYLGT-KRYIHRDLATRNILVENEN--------------------RVKIGDFGLTKVLPQDKEYYKVKEPGESPI  212 (326)
T ss_dssp             HHHHHHHHHH-TTEECSCCCGGGEEEEETT--------------------EEEECCCTTCEECCSSCSEEECSSCCSCCG
T ss_pred             HHHHHHHHHh-CCEeccCCCcceEEEcCCC--------------------cEEEecCcchhhccccccccccccCCCCce
Confidence            9999999999 9999999999999999987                    79999999998765442211        12


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhH--H-------------HHHHHHHHhhccCCCCCccchHH
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVL--W-------------LVYLVDMLLLKKTFDRSSKDERD  415 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~--~-------------~~~~~~~l~~~~~~~~~~~~s~~  415 (447)
                      .|++||.+.+.....+.|||+ +|.+.++++++..|+....  +             ...+...+......+.+..++++
T Consensus       213 ~y~aPE~~~~~~~~~~~Di~s-lG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (326)
T 2w1i_A          213 FWYAPESLTESKFSVASDVWS-FGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDE  291 (326)
T ss_dssp             GGCCHHHHHHCEEEHHHHHHH-HHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHH
T ss_pred             eEECchhhcCCCCCchhhHHH-HHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHHhhcCCCCCCCCcccHH
Confidence            378899887766666779999 9999999999887765321  0             11122333333445556778999


Q ss_pred             HHHHHHHhcccc-----CHHHHHc
Q 013230          416 LRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       416 l~dLl~~mL~~d-----sa~elL~  434 (447)
                      +.+||++||..|     |+.|+++
T Consensus       292 l~~li~~cl~~dP~~Rps~~el~~  315 (326)
T 2w1i_A          292 IYMIMTECWNNNVNQRPSFRDLAL  315 (326)
T ss_dssp             HHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHH
Confidence            999999999999     9988874

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.97  E-value=5e-31  Score=283.24  Aligned_cols=225  Identities=20%  Similarity=0.238  Sum_probs=179.9

Q ss_pred             cceE-EeccccceEEEEec--------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccce
Q 013230          135 ENIV-KVGEGTFGEAFLAG--------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       135 ~~~~-~LG~G~fG~V~~a~--------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~i  205 (447)
                      .+.+ +||+|+||.||+|.        .||+|++...       ......+.+.+|+.+|+.++|        ||    |
T Consensus       338 ~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~-------~~~~~~~~~~~E~~il~~l~h--------pn----i  398 (613)
T 2ozo_A          338 LIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQG-------TEKADTEEMMREAQIMHQLDN--------PY----I  398 (613)
T ss_dssp             EEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCC-------CSSTTHHHHHHHHHHHTTCCC--------TT----B
T ss_pred             eEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCC-------CChHHHHHHHHHHHHHHhCCC--------CC----E
Confidence            4444 89999999999985        2899988643       222345788999999999988        88    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVT  280 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil  280 (447)
                      |++++++.                               .+.+|+|||||.+| +|.+++.     +++..++.++.||+
T Consensus       399 v~l~~~~~-------------------------------~~~~~lv~E~~~~g-~L~~~l~~~~~~l~~~~~~~i~~qi~  446 (613)
T 2ozo_A          399 VRLIGVCQ-------------------------------AEALMLVMEMAGGG-PLHKFLVGKREEIPVSNVAELLHQVS  446 (613)
T ss_dssp             CCEEEEEE-------------------------------SSSEEEEEECCTTC-BHHHHHTTCTTTSCHHHHHHHHHHHH
T ss_pred             eeEEEEec-------------------------------cCCeEEEEEeCCCC-cHHHHHhhccCCCCHHHHHHHHHHHH
Confidence            99999853                               24599999999988 9999875     89999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE--------EEEecC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI--------FFLDLS  352 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~--------i~~~~~  352 (447)
                      .||+|||+ .||+||||||+|||++.++                    .+||+|||+|+.......        .....|
T Consensus       447 ~~L~~LH~-~~iiHrDlkp~NILl~~~~--------------------~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y  505 (613)
T 2ozo_A          447 MGMKYLEE-KNFVHRNLAARNVLLVNRH--------------------YAKISDFGLSKALGADDSYYTARSAGKWPLKW  505 (613)
T ss_dssp             HHHHHHHH-TTCCCSCCSGGGEEEEETT--------------------EEEECCCSTTTTCC--------------CCTT
T ss_pred             HHHHHHHH-CCEEcCcCCHHHEEEcCCC--------------------cEEEeeccCcccccCCCceeeeccCCCCccce
Confidence            99999999 9999999999999999987                    799999999987543311        111348


Q ss_pred             CCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----
Q 013230          353 QDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       353 ~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      ++||.+.+...+.+.|||+ +|++.+++++ |..|+.......... .+......+.+..+++++.+||.+||..|    
T Consensus       506 ~APE~~~~~~~~~~sDvwS-lGv~l~ellt~G~~Pf~~~~~~~~~~-~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~R  583 (613)
T 2ozo_A          506 YAPECINFRKFSSRSDVWS-YGVTMWEALSYGQKPYKKMKGPEVMA-FIEQGKRMECPPECPPELYALMSDCWIYKWEDR  583 (613)
T ss_dssp             SCHHHHHHCCCCHHHHHHH-HHHHHHHHHTTSCCTTTTCCSHHHHH-HHHTTCCCCCCTTCCHHHHHHHHHTTCSSTTTS
T ss_pred             eCHhhhcCCCCCcHHHHHH-HHHHHHHHHHCCCCCCCCCCHHHHHH-HHHcCCCCCCCCcCCHHHHHHHHHHcCCChhHC
Confidence            9999998777788889999 9999999998 888886543333322 22223345556678999999999999999    


Q ss_pred             -CHHHHH
Q 013230          428 -SAKEAI  433 (447)
Q Consensus       428 -sa~elL  433 (447)
                       |+.+++
T Consensus       584 Ps~~~l~  590 (613)
T 2ozo_A          584 PDFLTVE  590 (613)
T ss_dssp             CCHHHHH
T ss_pred             cCHHHHH
Confidence             777764

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.97  E-value=5.3e-32  Score=290.75  Aligned_cols=255  Identities=20%  Similarity=0.174  Sum_probs=187.9

Q ss_pred             CcchhhhhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccC
Q 013230          121 PTKLLDLFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRN  194 (447)
Q Consensus       121 ~~~~~~~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~  194 (447)
                      |......+++|   ++.++||+|+||.||+|++      ||+|++...       ......+.+.+|+.+++.++|    
T Consensus         6 p~~pg~~~grY---~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~-------~~~~~~~~~~~Ei~iL~~L~H----   71 (676)
T 3qa8_A            6 PSLPTQTCGPW---EMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQE-------LSPKNRERWCLEIQIMKKLNH----   71 (676)
T ss_dssp             --------------CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSC-------CCHHHHHHHHHHHHHHHHCCB----
T ss_pred             CCCCCCCCCCe---EEEEEEeeCCCeEEEEEEECCCCcEEEEEEeccc-------CCHHHHHHHHHHHHHHHhCCC----
Confidence            34444556666   9999999999999999974      999987643       122345678999999999998    


Q ss_pred             CCCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------C
Q 013230          195 EGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------L  267 (447)
Q Consensus       195 ~~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------l  267 (447)
                          ||    |+++++++...+                        .....+..|+|||||.|| +|.+++.       +
T Consensus        72 ----pn----IV~l~~v~~~~~------------------------~~~~~~~~~LVmEy~~gg-sL~~~L~~~~~~~~l  118 (676)
T 3qa8_A           72 ----PN----VVSAREVPDGLQ------------------------KLAPNDLPLLAMEYCEGG-DLRKYLNQFENCCGL  118 (676)
T ss_dssp             ----TT----BCCEEECCTTTC------------------------CCCTTSSCCCEEECCSSC-BHHHHHHSSSCTTCC
T ss_pred             ----CC----CCceeeeecccc------------------------cccCCCeEEEEEEeCCCC-CHHHHHHhcccCCCC
Confidence                88    999998832111                        012256689999999988 9999875       7


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC--
Q 013230          268 NINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED--  345 (447)
Q Consensus       268 ~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g--  345 (447)
                      ++..++.++.||+.||+|||+ .||+||||||+|||++.++.                 ...+||+|||+|+......  
T Consensus       119 se~~i~~I~~QLl~aL~yLHs-~gIVHrDLKP~NILl~~~g~-----------------~~~vKL~DFG~a~~~~~~~~~  180 (676)
T 3qa8_A          119 KEGPIRTLLSDISSALRYLHE-NRIIHRDLKPENIVLQPGPQ-----------------RLIHKIIDLGYAKELDQGELC  180 (676)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHH-TTBCCCCCCSTTEEEECCSS-----------------SCEEEECSCCCCCBTTSCCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHH-CCCccCCCCHHHeEeecCCC-----------------ceeEEEccccccccccccccc
Confidence            889999999999999999999 99999999999999997752                 1258999999998765432  


Q ss_pred             --EEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHH---------HHH-----Hhhc----cC
Q 013230          346 --IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYL---------VDM-----LLLK----KT  405 (447)
Q Consensus       346 --~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~---------~~~-----l~~~----~~  405 (447)
                        ......|++||.+.+...+...|+|+ +|.+.+++++|..|+.........         ...     ..+.    ..
T Consensus       181 ~~~~gt~~Y~APE~l~~~~~s~ksDIwS-LGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~  259 (676)
T 3qa8_A          181 TEFVGTLQYLAPELLEQKKYTVTVDYWS-FGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSV  259 (676)
T ss_dssp             CCCCSCCTTCSSCSSCCSCCSTTHHHHH-HHHHHHHHHSSCSSCCSSCHHHHSSTTCC------CCSCCCCSSSCCCCSS
T ss_pred             ccccCCcccCChHHhccCCCCchhHHHH-HHHHHHHHHHCCCCCCcccchhhhhhhhhcccchhhhhhhhhccccccccc
Confidence              12334589999999888888889999 999999999999888542111000         000     0000    01


Q ss_pred             CC----CCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCC
Q 013230          406 FD----RSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       406 ~~----~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~  441 (447)
                      .+    ....+++++.+||++||.+|     |+.|+++||||+.+
T Consensus       260 lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l  304 (676)
T 3qa8_A          260 LPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQAL  304 (676)
T ss_dssp             SCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHH
T ss_pred             cCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHH
Confidence            11    12347899999999999999     99999999999754

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.97  E-value=2.2e-31  Score=263.59  Aligned_cols=239  Identities=18%  Similarity=0.200  Sum_probs=171.3

Q ss_pred             CCCcceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHH--HhccccccCCCCCCCcccce
Q 013230          132 SDPENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLS--WTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il--~~L~h~~~~~~~~~n~~~~i  205 (447)
                      .+|++++.||+|+||.||+|+    .||+|++....           ......|..++  ..++|        +|    |
T Consensus        13 ~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~-----------~~~~~~e~~~~~~~~~~h--------~~----i   69 (336)
T 3g2f_A           13 DNLKLLELIGRGRYGAVYKGSLDERPVAVKVFSFAN-----------RQNFINEKNIYRVPLMEH--------DN----I   69 (336)
T ss_dssp             TSEEEEEEEEECSSEEEEEEEETTEEEEEEEEEGGG-----------HHHHHHHHHHHTSTTCCC--------TT----B
T ss_pred             HHhheeeecccCCCeEEEEEEECCeEEEEEEeeccc-----------hhhHHHHHHHHHHHhccC--------cc----h
Confidence            345999999999999999997    49999987431           13344454444  34666        77    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAG  282 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~g  282 (447)
                      +++++.+....                         ......+|+||||+.+| +|.+++.   +++..+..++.||+.|
T Consensus        70 ~~~~~~~~~~~-------------------------~~~~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~i~~qi~~~  123 (336)
T 3g2f_A           70 ARFIVGDERVT-------------------------ADGRMEYLLVMEYYPNG-SLXKYLSLHTSDWVSSCRLAHSVTRG  123 (336)
T ss_dssp             CCEEEEEEEEC-------------------------TTSCEEEEEEECCCTTC-BHHHHHHHCCBCHHHHHHHHHHHHHH
T ss_pred             hhheecccccc-------------------------cCCCceEEEEEecCCCC-cHHHHHhhcccchhHHHHHHHHHHHH
Confidence            99988654322                         11234689999999988 9999987   8899999999999999


Q ss_pred             HHHHHHhC---------CeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-------
Q 013230          283 LAVAEAAY---------EFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-------  346 (447)
Q Consensus       283 L~ylH~~~---------~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-------  346 (447)
                      |+|||+ .         ||+||||||+|||++.++                    .+||+|||+|+.......       
T Consensus       124 L~~LH~-~~~~~~~~~~~ivH~Dikp~Nill~~~~--------------------~~kL~DFG~a~~~~~~~~~~~~~~~  182 (336)
T 3g2f_A          124 LAYLHT-ELPRGDHYKPAISHRDLNSRNVLVKNDG--------------------TCVISDFGLSMRLTGNRLVRPGEED  182 (336)
T ss_dssp             HHHHHC-CBCCGGGCBCCEECSSCSGGGEEECTTS--------------------CEEECCCTTCEECSSSSCC------
T ss_pred             HHHHHh-hhccccccccceeecccccceEEEcCCC--------------------cEEEeeccceeecccccccCccccc
Confidence            999999 8         999999999999999887                    799999999987643211       


Q ss_pred             ------EEEecCCCCCCCCCCC-------CCchHHHHHhhccCCcccccCCCCCChh--------HH---------HHHH
Q 013230          347 ------FFLDLSQDPELFSGPK-------GDKQFDTYRKMKKVTEDQWEGSFPKTNV--------LW---------LVYL  396 (447)
Q Consensus       347 ------i~~~~~~~pelf~g~~-------~~~~~di~s~lg~~~~~~~~~~~p~~~~--------~~---------~~~~  396 (447)
                            .....|++||++.+..       ...+.|||+ +|.+.++++.+..|+...        .+         ....
T Consensus       183 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~Diws-lG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (336)
T 3g2f_A          183 NAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYA-LGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDM  261 (336)
T ss_dssp             ---CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHH-HHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHH
T ss_pred             cccccCCCccceeCchhhcCCcccccccccccccchHH-HHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHH
Confidence                  1234589999998732       223459999 999999998885443211        00         0001


Q ss_pred             HHHHhhc---cCCC----CCccchHHHHHHHHHhcccc-----CHHHH------HcCCCCCCC
Q 013230          397 VDMLLLK---KTFD----RSSKDERDLRSLKKRLDKYN-----SAKEA------IFDPFFSDL  441 (447)
Q Consensus       397 ~~~l~~~---~~~~----~~~~~s~~l~dLl~~mL~~d-----sa~el------L~HPff~~~  441 (447)
                      ...+...   ..++    .....++++++||.+||..|     ||+|+      +.++|-++-
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~~~  324 (336)
T 3g2f_A          262 QVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWERNK  324 (336)
T ss_dssp             HHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC--
T ss_pred             HhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHHhcc
Confidence            1111111   1111    12336778999999999999     99999      567887754

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.97  E-value=7.7e-31  Score=254.31  Aligned_cols=222  Identities=15%  Similarity=0.116  Sum_probs=170.6

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||.||+|++      ||+|++.....          ...+.+|+.+++.++|        +|    ++.
T Consensus        11 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----------~~~~~~e~~~l~~l~~--------~~----~i~   68 (296)
T 4hgt_A           11 YRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK----------HPQLHIESKIYKMMQG--------GV----GIP   68 (296)
T ss_dssp             CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-------------CCCHHHHHHHHHHHTT--------ST----TCC
T ss_pred             eEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc----------chHHHHHHHHHHHhcC--------CC----CCC
Confidence            49999999999999999973      99998764421          1346889999999998        55    444


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      .+..+..                             ..+..|+||||+ +| +|.+++.     +++..++.++.||+.|
T Consensus        69 ~~~~~~~-----------------------------~~~~~~lv~e~~-~~-~L~~~~~~~~~~~~~~~~~~i~~qi~~~  117 (296)
T 4hgt_A           69 TIRWCGA-----------------------------EGDYNVMVMELL-GP-SLEDLFNFCSRKFSLKTVLLLADQMISR  117 (296)
T ss_dssp             CEEEEEE-----------------------------ETTEEEEEEECC-CC-BHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred             eeeeecC-----------------------------CCCceEEEEEcc-CC-CHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            4444322                             145689999999 67 9999875     8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEE---ecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------------CEE
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLL---SRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------------DIF  347 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl---~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------------g~i  347 (447)
                      |+|||+ .||+||||||+|||+   +.++                    .+||+|||+|+.....            ...
T Consensus       118 l~~LH~-~~ivH~Dlkp~NIl~~~~~~~~--------------------~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~  176 (296)
T 4hgt_A          118 IEYIHS-KNFIHRDVKPDNFLMGLGKKGN--------------------LVYIIDFGLAKKYRDARTHQHIPYRENKNLT  176 (296)
T ss_dssp             HHHHHH-TTEECSCCSGGGEEECCGGGTT--------------------CEEECCCTTCEECBCTTTCCBCCCCCSCCCC
T ss_pred             HHHHHH-CCeecCCCCHHHeeeeccCCCC--------------------eEEEecCccceeccCcccCccCCCCcccccC
Confidence            999999 999999999999999   4554                    7999999999875432            112


Q ss_pred             EEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChh-------HHHHHHHHHHhhccCCCC---CccchHHHH
Q 013230          348 FLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV-------LWLVYLVDMLLLKKTFDR---SSKDERDLR  417 (447)
Q Consensus       348 ~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~-------~~~~~~~~~l~~~~~~~~---~~~~s~~l~  417 (447)
                      ....|++||.+.+.....+.|||+ +|.+.++++.|..|+...       ..........    ..+.   ...++++++
T Consensus       177 gt~~y~aPE~~~~~~~~~~~Di~s-lG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~  251 (296)
T 4hgt_A          177 GTARYASINTHLGIEQSRRDDLES-LGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKM----STPIEVLCKGYPSEFA  251 (296)
T ss_dssp             SCGGGCCHHHHTTCCCCHHHHHHH-HHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHH----HSCHHHHTTTSCHHHH
T ss_pred             CCccccchHHhcCCCCCchhHHHH-HHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccc----cchhhhhhccCCHHHH
Confidence            334589999999887777889999 999999999999888642       1111111111    1111   134688999


Q ss_pred             HHHHHhcccc-----CHHHHHc
Q 013230          418 SLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       418 dLl~~mL~~d-----sa~elL~  434 (447)
                      +||++||..|     |++++++
T Consensus       252 ~li~~~l~~~p~~Rpt~~~l~~  273 (296)
T 4hgt_A          252 TYLNFCRSLRFDDKPDYSYLRQ  273 (296)
T ss_dssp             HHHHHHHTSCTTCCCCHHHHHH
T ss_pred             HHHHHHHhcCCCCCCCHHHHHH
Confidence            9999999999     8888764

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.97  E-value=1.7e-30  Score=252.08  Aligned_cols=226  Identities=15%  Similarity=0.101  Sum_probs=172.0

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.+.||+|+||.||+|++      ||+|++.....          ...+.+|+.+++.++|        +|    ++
T Consensus        10 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----------~~~~~~e~~~l~~l~~--------~~----~i   67 (296)
T 3uzp_A           10 RYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK----------HPQLHIESKIYKMMQG--------GV----GI   67 (296)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS----------CCHHHHHHHHHHHHTT--------ST----TC
T ss_pred             EEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc----------hhHHHHHHHHHHHhhc--------CC----CC
Confidence            359999999999999999973      99998875421          2357899999999998        66    33


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      ..+..+..                             ..+..|+||||+ +| +|.+++.     +++..++.++.||+.
T Consensus        68 ~~~~~~~~-----------------------------~~~~~~lv~e~~-~~-~L~~~~~~~~~~~~~~~~~~i~~qi~~  116 (296)
T 3uzp_A           68 PTIRWCGA-----------------------------EGDYNVMVMELL-GP-SLEDLFNFCSRKFSLKTVLLLADQMIS  116 (296)
T ss_dssp             CCEEEEEE-----------------------------ETTEEEEEEECC-CC-BHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             CccccccC-----------------------------CCCceEEEEEec-CC-CHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence            33333222                             145689999999 67 9999876     899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEe---cCCCccccccccCcccccccCCCcEEEeeccceeecCCC------------CE
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLS---RNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------------DI  346 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~---~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------------g~  346 (447)
                      ||+|||+ +||+||||||+|||++   .++                    .+||+|||+|+.....            ..
T Consensus       117 ~l~~lH~-~~ivH~dlkp~NIl~~~~~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~  175 (296)
T 3uzp_A          117 RIEYIHS-KNFIHRDVKPDNFLMGLGKKGN--------------------LVYIIDFGLAKKYRDARTHQHIPYRENKNL  175 (296)
T ss_dssp             HHHHHHH-TTEECSCCCGGGEEECCGGGTT--------------------CEEECCCTTCEECBCTTTCCBCCCCCSCCC
T ss_pred             HHHHHHh-CCeeeCCCCHHHeEEecCCCCC--------------------eEEEeeCCCccccccccccccccccccccc
Confidence            9999999 9999999999999995   444                    7999999999875432            11


Q ss_pred             EEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChh-------HHHHHHHHHHhhccCCCCCccchHHHHHH
Q 013230          347 FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV-------LWLVYLVDMLLLKKTFDRSSKDERDLRSL  419 (447)
Q Consensus       347 i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~-------~~~~~~~~~l~~~~~~~~~~~~s~~l~dL  419 (447)
                      .....|++||.+.+...+.+.|||+ +|.+.+++++|..|+...       .+......... .........+++++.+|
T Consensus       176 ~gt~~y~aPE~~~~~~~~~~~Di~s-lG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l  253 (296)
T 3uzp_A          176 TGTARYASINTHLGIEQSRRDDLES-LGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMS-TPIEVLCKGYPSEFATY  253 (296)
T ss_dssp             CSCTTTCCHHHHTTCCCCHHHHHHH-HHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHH-SCHHHHTTTSCHHHHHH
T ss_pred             ccccccCChhhhcCCCCCcchhhHH-HHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccC-CchHHHHhhCCHHHHHH
Confidence            2334589999999877777889999 999999999999888642       11111111110 00000124578899999


Q ss_pred             HHHhcccc-----CHHHHHc
Q 013230          420 KKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       420 l~~mL~~d-----sa~elL~  434 (447)
                      +++||..|     |++++++
T Consensus       254 i~~~l~~dp~~Rps~~~l~~  273 (296)
T 3uzp_A          254 LNFCRSLRFDDKPDYSYLRQ  273 (296)
T ss_dssp             HHHHHTSCTTCCCCHHHHHH
T ss_pred             HHHHHhcCcCcCCCHHHHHH
Confidence            99999999     8888764

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.97  E-value=6.8e-31  Score=262.07  Aligned_cols=239  Identities=15%  Similarity=0.076  Sum_probs=171.9

Q ss_pred             CcceEEeccccceEEEEece---------eEEEEEecCCCccccc---ccccchHHHHHHHHHHHhccccccCCCCCCCc
Q 013230          134 PENIVKVGEGTFGEAFLAGN---------TVCKVVPIDGDLKVNG---EAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA  201 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~---------vAiK~i~~~~~~~~~~---~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~  201 (447)
                      |++.+.||+|+||.||+|++         +|+|++..........   ........+.+|+.+++.++|        || 
T Consensus        39 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h--------~n-  109 (345)
T 2v62_A           39 WVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDY--------LG-  109 (345)
T ss_dssp             EEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSC--------CC-
T ss_pred             EEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccc--------cC-
Confidence            49999999999999999973         8999887542100000   000112346678888888887        88 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHH
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLV  277 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~  277 (447)
                         |+++++++....                          .....+|+||||+ +| +|.+++.    +++..++.++.
T Consensus       110 ---i~~~~~~~~~~~--------------------------~~~~~~~lv~e~~-~~-~L~~~l~~~~~~~~~~~~~i~~  158 (345)
T 2v62_A          110 ---IPLFYGSGLTEF--------------------------KGRSYRFMVMERL-GI-DLQKISGQNGTFKKSTVLQLGI  158 (345)
T ss_dssp             ---CCCEEEEEEEES--------------------------SSCEEEEEEEECE-EE-EHHHHCBGGGBCCHHHHHHHHH
T ss_pred             ---cceeeccccccc--------------------------CCCcEEEEEEecc-CC-CHHHHHHhcCCCCHHHHHHHHH
Confidence               999999976521                          1145699999999 77 9999986    89999999999


Q ss_pred             HHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------------C
Q 013230          278 QVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------------D  345 (447)
Q Consensus       278 Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------------g  345 (447)
                      ||+.||+|||+ .||+||||||+|||++.++.                  ..+||+|||+|+.....            .
T Consensus       159 qi~~aL~~LH~-~~ivH~Dlkp~NIll~~~~~------------------~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~  219 (345)
T 2v62_A          159 RMLDVLEYIHE-NEYVHGDIKAANLLLGYKNP------------------DQVYLADYGLSYRYCPNGNHKQYQENPRKG  219 (345)
T ss_dssp             HHHHHHHHHHH-TTEECSCCSGGGEEEESSST------------------TSEEECCCTTCEESSGGGCCCCCCCCGGGC
T ss_pred             HHHHHHHHHHh-CCeeCCCcCHHHEEEccCCC------------------CcEEEEeCCCceecccccccccchhccccc
Confidence            99999999999 99999999999999997751                  16999999999865322            1


Q ss_pred             EEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChh----HHHHHHHHHHhhccCCC-------CCccchH
Q 013230          346 IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV----LWLVYLVDMLLLKKTFD-------RSSKDER  414 (447)
Q Consensus       346 ~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~----~~~~~~~~~l~~~~~~~-------~~~~~s~  414 (447)
                      ......|++||++.+...+.+.|||+ +|.+.+++++|..||...    ...........  ..++       .....++
T Consensus       220 ~~gt~~y~aPE~~~~~~~~~~~Di~s-lG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  296 (345)
T 2v62_A          220 HNGTIEFTSLDAHKGVALSRRSDVEI-LGYCMLRWLCGKLPWEQNLKDPVAVQTAKTNLL--DELPQSVLKWAPSGSSCC  296 (345)
T ss_dssp             SCSCTTTCCHHHHHTCCCCHHHHHHH-HHHHHHHHHHSSCTTGGGTTCHHHHHHHHHHHH--HTTTHHHHHHSCTTSCCH
T ss_pred             cCCCccccCHHHhcCCCCCchhhHHH-HHHHHHHHHhCCCCccccccccHHHHHHHHhhc--ccccHHHHhhccccccHH
Confidence            12334589999998877778889999 999999999999998542    11111111111  1111       1125788


Q ss_pred             HHHHHHHHhcccc-----CHHHHHc
Q 013230          415 DLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       415 ~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      ++++||.+||..|     |++++++
T Consensus       297 ~l~~li~~~l~~dp~~Rps~~~l~~  321 (345)
T 2v62_A          297 EIAQFLVCAHSLAYDEKPNYQALKK  321 (345)
T ss_dssp             HHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             HHHHHHHHHhhcCcccCCCHHHHHH
Confidence            9999999999999     8888764

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.97  E-value=1.3e-30  Score=281.91  Aligned_cols=227  Identities=23%  Similarity=0.210  Sum_probs=183.0

Q ss_pred             CcceEEeccccceEEEEece---------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          134 PENIVKVGEGTFGEAFLAGN---------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~---------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      |++.+.||+|+||.||+|+.         ||+|++...       ......+.+.+|+.+++.++|        ||    
T Consensus       392 y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~-------~~~~~~~~~~~E~~~l~~l~H--------pn----  452 (656)
T 2j0j_A          392 IELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNC-------TSDSVREKFLQEALTMRQFDH--------PH----  452 (656)
T ss_dssp             EEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSST-------TCHHHHHHHHHHHHHHHHCCC--------TT----
T ss_pred             EEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEeccc-------CCHHHHHHHHHHHHHHHhCCC--------CC----
Confidence            49999999999999999963         788876532       223344678999999999998        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQV  279 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qi  279 (447)
                      |+++++++.                               ++.+|+||||+.+| +|.+++.     +++..++.++.||
T Consensus       453 Iv~l~~~~~-------------------------------~~~~~lv~E~~~~g-~L~~~l~~~~~~l~~~~~~~i~~qi  500 (656)
T 2j0j_A          453 IVKLIGVIT-------------------------------ENPVWIIMELCTLG-ELRSFLQVRKFSLDLASLILYAYQL  500 (656)
T ss_dssp             BCCEEEEEC-------------------------------SSSCEEEEECCTTC-BHHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred             CCeEEEEEe-------------------------------cCceEEEEEcCCCC-cHHHHHHhccCCCCHHHHHHHHHHH
Confidence            999999841                               34589999999988 9999886     8899999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE------EEEecCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI------FFLDLSQ  353 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~------i~~~~~~  353 (447)
                      +.||.|||+ .||+||||||+|||++.++                    .+||+|||+|+.......      .....|+
T Consensus       501 ~~aL~~LH~-~givHrDikp~NILl~~~~--------------------~vkL~DFG~a~~~~~~~~~~~~~~~~t~~y~  559 (656)
T 2j0j_A          501 STALAYLES-KRFVHRDIAARNVLVSSND--------------------CVKLGDFGLSRYMEDSTYYKASKGKLPIKWM  559 (656)
T ss_dssp             HHHHHHHHH-TTCCCSCCSGGGEEEEETT--------------------EEEECCCCCCCSCCC----------CCGGGC
T ss_pred             HHHHHHHHh-CCccccccchHhEEEeCCC--------------------CEEEEecCCCeecCCCcceeccCCCCCccee
Confidence            999999999 9999999999999999987                    799999999987654321      1123489


Q ss_pred             CCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----
Q 013230          354 DPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----  427 (447)
Q Consensus       354 ~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----  427 (447)
                      +||.+.+...+...|||+ +|.+.++++. |..|+...........+. .....+.+..+++++.+||.+||..|     
T Consensus       560 aPE~~~~~~~~~~~DiwS-lG~il~ellt~g~~Pf~~~~~~~~~~~i~-~~~~~~~~~~~~~~l~~li~~~l~~dP~~RP  637 (656)
T 2j0j_A          560 APESINFRRFTSASDVWM-FGVCMWEILMHGVKPFQGVKNNDVIGRIE-NGERLPMPPNCPPTLYSLMTKCWAYDPSRRP  637 (656)
T ss_dssp             CHHHHHHCCCCHHHHHHH-HHHHHHHHHTTSCCTTTTCCHHHHHHHHH-HTCCCCCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             CHHHhcCCCCCchhhHHH-HHHHHHHHHHcCCCCCCCCCHHHHHHHHH-cCCCCCCCccccHHHHHHHHHHcCCChhHCc
Confidence            999998777777889999 9999999986 778886544333333332 23345556678999999999999999     


Q ss_pred             CHHHHHc
Q 013230          428 SAKEAIF  434 (447)
Q Consensus       428 sa~elL~  434 (447)
                      |+.|+++
T Consensus       638 s~~el~~  644 (656)
T 2j0j_A          638 RFTELKA  644 (656)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            8998875

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.97  E-value=9.7e-31  Score=255.65  Aligned_cols=232  Identities=19%  Similarity=0.181  Sum_probs=178.6

Q ss_pred             CcceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeee
Q 013230          134 PENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMF  209 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~  209 (447)
                      |...+.||+|+||.||+|+    .||+|++.....    .......+.+.+|+.+++.++|        ||    |++++
T Consensus        33 ~~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~----~~~~~~~~~~~~E~~~l~~l~h--------~~----i~~~~   96 (307)
T 2nru_A           33 SVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVD----ITTEELKQQFDQEIKVMAKCQH--------EN----LVELL   96 (307)
T ss_dssp             TTTCCEEEECSSEEEEEEESSSCEEEEEEECCCTT----SCTTTHHHHHHHHHHHHHHCCC--------TT----BCCEE
T ss_pred             cccCCccccCCCeEEEEEEECCceEEEEEEecccC----cchHHHHHHHHHHHHHHHhcCC--------CC----eEEEE
Confidence            3556999999999999997    499998864421    1223345678999999999988        88    99999


Q ss_pred             eEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------CCHHHHHHHHHHHHHH
Q 013230          210 EIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------LNINEARSLLVQVTAG  282 (447)
Q Consensus       210 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------l~~~~~~~i~~Qil~g  282 (447)
                      +++.                              ..+..|+||||+.+| +|.+++.       +++..++.++.||+.|
T Consensus        97 ~~~~------------------------------~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~  145 (307)
T 2nru_A           97 GFSS------------------------------DGDDLCLVYVYMPNG-SLLDRLSCLDGTPPLSWHMRCKIAQGAANG  145 (307)
T ss_dssp             EEEC------------------------------SSSSCEEEEECCTTC-BHHHHHHTGGGCCCCCHHHHHHHHHHHHHH
T ss_pred             EEEe------------------------------cCCceEEEEEecCCC-cHHHHHHhccCCCCCCHHHHHHHHHHHHHH
Confidence            9843                              246689999999988 9988875       8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-------EEEEecCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-------IFFLDLSQDP  355 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-------~i~~~~~~~p  355 (447)
                      |+|||+ .||+||||||+|||++.++                    .+||+|||+++......       ......|++|
T Consensus       146 l~~lH~-~~i~H~dlkp~Nili~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aP  204 (307)
T 2nru_A          146 INFLHE-NHHIHRDIKSANILLDEAF--------------------TAKISDFGLARASEKFAQTVMTSRIVGTTAYMAP  204 (307)
T ss_dssp             HHHHHH-TTEECSCCCGGGEEECTTC--------------------CEEECCCTTCEECCSCSSCEECSSCCSCGGGCCH
T ss_pred             HHHHhc-CCeecCCCCHHHEEEcCCC--------------------cEEEeecccccccccccccccccccCCCcCcCCh
Confidence            999999 9999999999999999887                    79999999998754321       1223458899


Q ss_pred             CCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHH----HHHHHHH---------HhhccCCCCCccchHHHHHHHHH
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLW----LVYLVDM---------LLLKKTFDRSSKDERDLRSLKKR  422 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~----~~~~~~~---------l~~~~~~~~~~~~s~~l~dLl~~  422 (447)
                      |.+.+ ....+.|+|+ +|.+.+++++|..|+.....    .......         .........+...+..+.+|+.+
T Consensus       205 E~~~~-~~~~~~Dv~s-lG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  282 (307)
T 2nru_A          205 EALRG-EITPKSDIYS-FGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQ  282 (307)
T ss_dssp             HHHTT-EECTHHHHHH-HHHHHHHHHHCCCSBCTTBSSSBTTHHHHHHHTTSCCHHHHSCSSCSCCCHHHHHHHHHHHHH
T ss_pred             HHhcC-CCCccchhHH-HHHHHHHHHHCCCCcccCcchHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence            98877 3566779999 99999999999888754211    0111110         00011112234567899999999


Q ss_pred             hcccc-----CHHHHHcC
Q 013230          423 LDKYN-----SAKEAIFD  435 (447)
Q Consensus       423 mL~~d-----sa~elL~H  435 (447)
                      ||..|     |+++++++
T Consensus       283 cl~~~p~~Rps~~~l~~~  300 (307)
T 2nru_A          283 CLHEKKNKRPDIKKVQQL  300 (307)
T ss_dssp             HTCSSTTTSCCHHHHHHH
T ss_pred             HcCCCcccCcCHHHHHHH
Confidence            99999     99998864

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.97  E-value=8.9e-32  Score=275.61  Aligned_cols=254  Identities=17%  Similarity=0.131  Sum_probs=176.1

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCc---ccc
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA---CTT  204 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~---~~~  204 (447)
                      |...+.||+|+||.||+|++      ||||++.....     ......+.+.+|+.+++.+.|.++     ++.   +..
T Consensus        80 ~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~-----~~~~~~~~~~~E~~~~~~l~~~~~-----~~~~~~~~~  149 (413)
T 3dzo_A           80 LVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTER-----PPSNAIKQMKEEVLRLRLLRGIKN-----QKQAKVHLR  149 (413)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC---------CCHHHHHHHHGGGGSTTCCS-----HHHHHHHTC
T ss_pred             EEEecccccCCCEEEEEEEecCCCCceEEEEEecCCC-----ccHHHHHHHHHHHHHHHhhccCCC-----HHHHHHhcc
Confidence            47889999999999999983      99998874432     222345778999999999987432     110   001


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----------CCHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----------LNINEAR  273 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----------l~~~~~~  273 (447)
                      ++...+.....|.  +.+......+           .......++++|+++. | +|.+++.           +++..+.
T Consensus       150 ~~~~~~~~~~~~~--~~~~~~~~~~-----------~~~~~~~~~~~~~~~~-~-~L~~ll~~l~~~~~~~~~l~~~~~~  214 (413)
T 3dzo_A          150 FIFPFDLVKDPQK--KKMIRVRLDE-----------RDMWVLSRFFLYPRMQ-S-NLQTFGEVLLSHSSTHKSLVHHARL  214 (413)
T ss_dssp             BCCCCEEEECCC----------------------------CCSEEEEEECCS-E-EHHHHHHHHHHHTTTSHHHHHHHHH
T ss_pred             cccchhhcccCCC--CccccccCCC-----------ccccccceEEEeehhc-C-CHHHHHHHhhcccccCCCCCHHHHH
Confidence            1222222111110  0000000000           0001234788888775 5 9998873           6778888


Q ss_pred             HHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--CEEEEec
Q 013230          274 SLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--DIFFLDL  351 (447)
Q Consensus       274 ~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--g~i~~~~  351 (447)
                      .++.||+.||+|||+ .||+||||||+|||++.++                    .+||+|||+|+.....  .... ..
T Consensus       215 ~i~~qi~~aL~~LH~-~~iiHrDiKp~NILl~~~~--------------------~~kL~DFG~a~~~~~~~~~~~g-~~  272 (413)
T 3dzo_A          215 QLTLQVIRLLASLHH-YGLVHTYLRPVDIVLDQRG--------------------GVFLTGFEHLVRDGASAVSPIG-RG  272 (413)
T ss_dssp             HHHHHHHHHHHHHHH-TTEECSCCCGGGEEECTTC--------------------CEEECCGGGCEETTEEECCCCC-TT
T ss_pred             HHHHHHHHHHHHHHh-CCcccCCcccceEEEecCC--------------------eEEEEeccceeecCCccccCCC-Cc
Confidence            999999999999999 9999999999999999998                    7999999999865432  1122 56


Q ss_pred             CCCCCCC----------CCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHH
Q 013230          352 SQDPELF----------SGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKK  421 (447)
Q Consensus       352 ~~~pelf----------~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~  421 (447)
                      |++||++          .+...+.+.|||+ +|++.++++++..|+.........      ...++....+++++++||.
T Consensus       273 y~aPE~~~~~~~~~~~~~~~~~~~~~DvwS-lGvil~elltg~~Pf~~~~~~~~~------~~~~~~~~~~~~~~~~li~  345 (413)
T 3dzo_A          273 FAPPETTAERMLPFGQHHPTLMTFAFDTWT-LGLAIYWIWCADLPNTDDAALGGS------EWIFRSCKNIPQPVRALLE  345 (413)
T ss_dssp             TCCHHHHHHHTSTTGGGCCEEECHHHHHHH-HHHHHHHHHHSSCCCCTTGGGSCS------GGGGSSCCCCCHHHHHHHH
T ss_pred             eeCchhhhccccccccccCcCCCchhhHHH-HHHHHHHHHHCCCCCCCcchhhhH------HHHHhhcccCCHHHHHHHH
Confidence            8999998          4444556779999 999999999999998754221111      1223333467899999999


Q ss_pred             Hhcccc-----CHHHHHcCCCCCCC
Q 013230          422 RLDKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       422 ~mL~~d-----sa~elL~HPff~~~  441 (447)
                      +||..|     |+.|+++||||+.+
T Consensus       346 ~~l~~dP~~Rpt~~~~l~~~~~~~~  370 (413)
T 3dzo_A          346 GFLRYPKEDRLLPLQAMETPEYEQL  370 (413)
T ss_dssp             HHTCSSGGGSCCHHHHTTSHHHHHH
T ss_pred             HHccCChhhCcCHHHHHhCHHHHHH
Confidence            999999     99999999999754

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.97  E-value=4.5e-30  Score=254.53  Aligned_cols=241  Identities=17%  Similarity=0.186  Sum_probs=180.1

Q ss_pred             CCcchhhh-hhccCCCcceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHh--ccccc
Q 013230          120 APTKLLDL-FSKYSDPENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWT--LNHLR  192 (447)
Q Consensus       120 ~~~~~~~~-~~~y~~~~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~--L~h~~  192 (447)
                      .|...... .++|   ++.+.||+|+||.||+|+    .||+|++...           ....+.+|+.+++.  ++|  
T Consensus        32 ~~~~~~~~~~~~y---~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~-----------~~~~~~~e~~~~~~~~l~h--   95 (342)
T 1b6c_B           32 LPLLVQRTIARTI---VLQESIGKGRFGEVWRGKWRGEEVAVKIFSSR-----------EERSWFREAEIYQTVMLRH--   95 (342)
T ss_dssp             SCHHHHHHHHHHC---EEEEEEEEETTEEEEEEEETTEEEEEEEECGG-----------GHHHHHHHHHHHHHSCCCC--
T ss_pred             CceeecccccccE---EEEeeecCCCCcEEEEEEEcCccEEEEEeCch-----------hHHHHHHHHHHHHHhhcCC--
Confidence            34444443 3455   999999999999999997    4999988532           22567889999888  566  


Q ss_pred             cCCCCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCH
Q 013230          193 RNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNI  269 (447)
Q Consensus       193 ~~~~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~  269 (447)
                            ||    |+++++++...+.                          ....+|+||||+.+| +|.+++.   +++
T Consensus        96 ------~n----i~~~~~~~~~~~~--------------------------~~~~~~lv~e~~~~g-~L~~~l~~~~~~~  138 (342)
T 1b6c_B           96 ------EN----ILGFIAADNKDNG--------------------------TWTQLWLVSDYHEHG-SLFDYLNRYTVTV  138 (342)
T ss_dssp             ------TT----BCCEEEEEECCCS--------------------------SCCCEEEEECCCTTC-BHHHHHHHCCBCH
T ss_pred             ------Cc----EEEEEeeecccCC--------------------------ccceeEEEEeecCCC-cHHHHHhccCccH
Confidence                  77    9999999654110                          113699999999988 9999987   899


Q ss_pred             HHHHHHHHHHHHHHHHHH--------HhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeec
Q 013230          270 NEARSLLVQVTAGLAVAE--------AAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRIN  341 (447)
Q Consensus       270 ~~~~~i~~Qil~gL~ylH--------~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~  341 (447)
                      ..++.++.||+.||+|||        + .||+||||||+|||++.++                    .+||+|||+++..
T Consensus       139 ~~~~~i~~~i~~~l~~lH~~~~~~~~~-~~ivH~Dlkp~NIll~~~~--------------------~~kL~Dfg~~~~~  197 (342)
T 1b6c_B          139 EGMIKLALSTASGLAHLHMEIVGTQGK-PAIAHRDLKSKNILVKKNG--------------------TCCIADLGLAVRH  197 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCBCSTTCB-CEEECSCCSGGGEEECTTS--------------------CEEECCCTTCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccc-CCeeeCCCCHHHEEECCCC--------------------CEEEEECCCceec
Confidence            999999999999999999        7 9999999999999999887                    7999999999876


Q ss_pred             CCCC---------EEEEecCCCCCCCCCCCCC------chHHHHHhhccCCcccccC----------CCCCChhH----H
Q 013230          342 TGED---------IFFLDLSQDPELFSGPKGD------KQFDTYRKMKKVTEDQWEG----------SFPKTNVL----W  392 (447)
Q Consensus       342 ~~~g---------~i~~~~~~~pelf~g~~~~------~~~di~s~lg~~~~~~~~~----------~~p~~~~~----~  392 (447)
                      ....         ......|++||++.+....      .+.|||+ +|.+.++++++          ..|+....    .
T Consensus       198 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~s-lG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~  276 (342)
T 1b6c_B          198 DSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYA-MGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPS  276 (342)
T ss_dssp             ETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHH-HHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCC
T ss_pred             cccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHH-HHHHHHHHHhccCcCCcccccccCccccCcCccc
Confidence            5432         1233458999998775332      3469999 99999999988          56775431    1


Q ss_pred             HHHHHHHHhhcc-CCCCC-----ccchHHHHHHHHHhcccc-----CHHHHHcC
Q 013230          393 LVYLVDMLLLKK-TFDRS-----SKDERDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       393 ~~~~~~~l~~~~-~~~~~-----~~~s~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      ...+...+.... ....+     ......+++||.+||..|     |+.|+++|
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~  330 (342)
T 1b6c_B          277 VEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKT  330 (342)
T ss_dssp             HHHHHHHHTTSCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHH
Confidence            112222222111 11111     245678999999999999     99999875

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.97  E-value=2e-31  Score=261.73  Aligned_cols=230  Identities=18%  Similarity=0.173  Sum_probs=175.3

Q ss_pred             CCcceEEeccccceEEEEec---eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeee
Q 013230          133 DPENIVKVGEGTFGEAFLAG---NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMF  209 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~---~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~  209 (447)
                      +|++.+.||+|+||.||+|+   .+|+|++.....      .....+.+.+|+.+++.++|        +|    |++++
T Consensus        34 ~~~~~~~lg~G~~g~V~~~~~~~~~avk~~~~~~~------~~~~~~~~~~e~~~l~~l~h--------~~----iv~~~   95 (319)
T 2y4i_B           34 QLEIGELIGKGRFGQVYHGRWHGEVAIRLIDIERD------NEDQLKAFKREVMAYRQTRH--------EN----VVLFM   95 (319)
T ss_dssp             CEECCCBCCCSSSSEEEEEEESSSEEEEECCCCSC------CCCCCCCCCTTGGGGTTCCC--------TT----BCCCC
T ss_pred             HeEEeeEeccCCceEEEEEEEcCeEEEEEeecCCC------CHHHHHHHHHHHHHHhcCCC--------CC----EeEEE
Confidence            45999999999999999997   499998875432      12223446789999999988        88    99999


Q ss_pred             eEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHHHH
Q 013230          210 EIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       210 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~gL~  284 (447)
                      +++..                              .+.+|+||||+.|| +|.+++.     +++..++.++.||+.||+
T Consensus        96 ~~~~~------------------------------~~~~~iv~e~~~~~-~L~~~l~~~~~~~~~~~~~~i~~qi~~al~  144 (319)
T 2y4i_B           96 GACMS------------------------------PPHLAIITSLCKGR-TLYSVVRDAKIVLDVNKTRQIAQEIVKGMG  144 (319)
T ss_dssp             EEEEC------------------------------SSCEEEECBCCCSE-EHHHHTTSSCCCCCSHHHHHHHHHHHHHHH
T ss_pred             EEEec------------------------------CCceEEEeecccCC-cHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            98543                              45699999999987 9999986     889999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----------EEEEecCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----------IFFLDLSQD  354 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----------~i~~~~~~~  354 (447)
                      |||+ .||+||||||+|||++. +                    .+||+|||+++......          ......|++
T Consensus       145 ~lH~-~~i~H~dlkp~NIl~~~-~--------------------~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~a  202 (319)
T 2y4i_B          145 YLHA-KGILHKDLKSKNVFYDN-G--------------------KVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLA  202 (319)
T ss_dssp             HHHH-TTCCCCCCCSTTEEEC-----------------------CCEECCCSCCC----------CCSCBCCSGGGGTSC
T ss_pred             HHHh-CCccccCCChhhEEEeC-C--------------------CEEEeecCCccccccccccccccccccCCCcccccC
Confidence            9999 99999999999999984 3                    69999999987643210          011234789


Q ss_pred             CCCCCCC---------CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcc
Q 013230          355 PELFSGP---------KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDK  425 (447)
Q Consensus       355 pelf~g~---------~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~  425 (447)
                      ||++.+.         ....+.|||+ +|.+.++++++..|+........................++.++.+||.+||.
T Consensus       203 PE~~~~~~~~~~~~~~~~~~~~Di~s-lG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  281 (319)
T 2y4i_B          203 PEIIRQLSPDTEEDKLPFSKHSDVFA-LGTIWYELHAREWPFKTQPAEAIIWQMGTGMKPNLSQIGMGKEISDILLFCWA  281 (319)
T ss_dssp             HHHHSCBSCC--CCCSCCCHHHHHHH-HHHHHHHHHHSSCSSSSCCHHHHHHHHHTTCCCCCCCSSCCTTHHHHHHHHHC
T ss_pred             hHHhhhccccccccccCCCchhhHHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhccCCCCCCCcCCCCHHHHHHHHHHhc
Confidence            9988652         2455669999 99999999999999876544333333332221122233578899999999999


Q ss_pred             cc-----CHHHHHc
Q 013230          426 YN-----SAKEAIF  434 (447)
Q Consensus       426 ~d-----sa~elL~  434 (447)
                      .|     |+.++++
T Consensus       282 ~~p~~Rpt~~~l~~  295 (319)
T 2y4i_B          282 FEQEERPTFTKLMD  295 (319)
T ss_dssp             SSTTTSCCHHHHHH
T ss_pred             CChhhCcCHHHHHH
Confidence            99     8988875

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.97  E-value=2.4e-30  Score=258.69  Aligned_cols=225  Identities=14%  Similarity=0.045  Sum_probs=173.2

Q ss_pred             CcceEEeccccceEEEEec--------------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCC
Q 013230          134 PENIVKVGEGTFGEAFLAG--------------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTL  199 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~--------------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~  199 (447)
                      |++.+.||+|+||.||+|+              .||+|++...             +.+.+|+.++++++|        |
T Consensus        44 y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-------------~~~~~E~~~l~~l~h--------~  102 (352)
T 2jii_A           44 WKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-------------GRLFNEQNFFQRAAK--------P  102 (352)
T ss_dssp             EEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-------------STHHHHHHHHHHHCC--------H
T ss_pred             EEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-------------chHHHHHHHHHHhcc--------c
Confidence            4999999999999999995              3889987633             246899999999998        7


Q ss_pred             Ccccceee---------------eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhh
Q 013230          200 NACTTFVE---------------MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESF  264 (447)
Q Consensus       200 n~~~~iv~---------------l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~  264 (447)
                      |    |++               +++++..                             .++.+|+||||+ +| +|.++
T Consensus       103 n----iv~~~~~~~~~~~~~i~~~~~~~~~-----------------------------~~~~~~lv~e~~-~~-~L~~~  147 (352)
T 2jii_A          103 L----QVNKWKKLYSTPLLAIPTCMGFGVH-----------------------------QDKYRFLVLPSL-GR-SLQSA  147 (352)
T ss_dssp             H----HHHHHHHHTTCTTCSCCCCCEEEEE-----------------------------TTTEEEEEEECC-CE-EHHHH
T ss_pred             c----hhhhhhhhccCCccCccchhhcccc-----------------------------CCcEEEEEecCC-Cc-CHHHH
Confidence            7    555               4555322                             246689999999 77 99998


Q ss_pred             hc------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccce
Q 013230          265 VL------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLS  338 (447)
Q Consensus       265 i~------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla  338 (447)
                      +.      +++..++.++.||+.||+|||+ .||+||||||+|||++.++.                  ..+||+|||+|
T Consensus       148 l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~-~~ivH~Dikp~NIl~~~~~~------------------~~~kl~Dfg~a  208 (352)
T 2jii_A          148 LDVSPKHVLSERSVLQVACRLLDALEFLHE-NEYVHGNVTAENIFVDPEDQ------------------SQVTLAGYGFA  208 (352)
T ss_dssp             HHHSGGGCCCHHHHHHHHHHHHHHHHHHHH-TTCBCSCCCGGGEEEETTEE------------------EEEEECCGGGC
T ss_pred             HHhCCcCCCCHHHHHHHHHHHHHHHHHHHh-CCccCCCCCHHHEEEcCCCC------------------ceEEEecCcce
Confidence            75      8999999999999999999999 99999999999999998741                  15999999999


Q ss_pred             eecCCCC------------EEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhH-----HHHHHHHHHh
Q 013230          339 RINTGED------------IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVL-----WLVYLVDMLL  401 (447)
Q Consensus       339 ~~~~~~g------------~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~-----~~~~~~~~l~  401 (447)
                      +.....+            ......|++||++.+...+.+.|||+ +|.+.++++++..|+....     ..........
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s-lG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~  287 (352)
T 2jii_A          209 FRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQS-LGYCMLKWLYGFLPWTNCLPNTEDIMKQKQKFVD  287 (352)
T ss_dssp             BCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHH-HHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHH
T ss_pred             eeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHH-HHHHHHHHHhCCCCcccCCcCHHHHHHHHHhccC
Confidence            7654321            12334589999998877777889999 9999999999999987542     1111111111


Q ss_pred             hccCCCC----CccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          402 LKKTFDR----SSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       402 ~~~~~~~----~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      ....+..    ...+++++++||++||..|     |++++++
T Consensus       288 ~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~  329 (352)
T 2jii_A          288 KPGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRN  329 (352)
T ss_dssp             SCCCEECTTSCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             ChhhhhhhccccCCCcHHHHHHHHHHHhCChhhCCCHHHHHH
Confidence            1111111    1246899999999999999     8888753

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.97  E-value=2.3e-30  Score=270.33  Aligned_cols=226  Identities=19%  Similarity=0.151  Sum_probs=169.8

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|+++++||+|+||.||+|++      ||||++.....          ...+.+|+.+++.|.|        ++.   +.
T Consensus         8 ~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~----------~~~~~~E~~il~~L~~--------~~~---i~   66 (483)
T 3sv0_A            8 KFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK----------HPQLLYESKIYRILQG--------GTG---IP   66 (483)
T ss_dssp             TEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS----------SCCHHHHHHHHHHTTT--------STT---CC
T ss_pred             cEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc----------cHHHHHHHHHHHHhcC--------CCC---CC
Confidence            359999999999999999973      99998775432          1246899999999988        331   33


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      .+..++..                              .+..||||||+ +| +|.+++.     +++..++.++.||+.
T Consensus        67 ~i~~~~~~------------------------------~~~~~lvme~~-g~-sL~~ll~~~~~~l~~~~~~~i~~qi~~  114 (483)
T 3sv0_A           67 NVRWFGVE------------------------------GDYNVLVMDLL-GP-SLEDLFNFCSRKLSLKTVLMLADQMIN  114 (483)
T ss_dssp             CEEEEEEE------------------------------TTEEEEEEECC-CC-BHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             eEEEEEee------------------------------CCEEEEEEECC-CC-CHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence            44333222                              45689999999 67 9999885     899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEe---cCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------------E
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLS---RNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------------I  346 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~---~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------------~  346 (447)
                      ||+|||+ +|||||||||+||||+   .++                    .+||+|||+|+......            .
T Consensus       115 aL~yLH~-~gIvHrDIKP~NILl~~~~~~~--------------------~vkL~DFGla~~~~~~~~~~~~~~~~~~~~  173 (483)
T 3sv0_A          115 RVEFVHS-KSFLHRDIKPDNFLMGLGRRAN--------------------QVYIIDFGLAKKYRDTSTHQHIPYRENKNL  173 (483)
T ss_dssp             HHHHHHH-TTEECCCCCGGGEEECCGGGTT--------------------CEEECCCTTCEECBCTTTCCBCCCCCCCCC
T ss_pred             HHHHHHH-CCEeecccCcceEEEecCCCCC--------------------eEEEEeCCcceeccCCcccccccccccccc
Confidence            9999999 9999999999999994   444                    79999999998765431            1


Q ss_pred             EEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChh---HHHHHHHHHHhhccCC---CCCccchHHHHHHH
Q 013230          347 FFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV---LWLVYLVDMLLLKKTF---DRSSKDERDLRSLK  420 (447)
Q Consensus       347 i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~---~~~~~~~~~l~~~~~~---~~~~~~s~~l~dLl  420 (447)
                      .....|++||.+.+.....+.|||+ +|++.++++.|..||...   .....+..+.......   .....++.++.+||
T Consensus       174 ~gt~~Y~aPE~~~~~~~s~~sDvwS-lGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~li  252 (483)
T 3sv0_A          174 TGTARYASVNTHLGIEQSRRDDLES-LGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATSIEALCRGYPTEFASYF  252 (483)
T ss_dssp             CSCTTTCCHHHHTTCCCCHHHHHHH-HHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHSCHHHHHTTSCHHHHHHH
T ss_pred             CCCccccCHHHhcCCCCChHHHHHH-HHHHHHHHHhCCCCCccccchhHHHHHHHHhhccccccHHHHhcCCcHHHHHHH
Confidence            2334589999999887777889999 999999999999998642   1111111111000000   01134678999999


Q ss_pred             HHhcccc-----CHHHHH
Q 013230          421 KRLDKYN-----SAKEAI  433 (447)
Q Consensus       421 ~~mL~~d-----sa~elL  433 (447)
                      .+||..|     ++++++
T Consensus       253 ~~cl~~dP~~RPs~~el~  270 (483)
T 3sv0_A          253 HYCRSLRFDDKPDYSYLK  270 (483)
T ss_dssp             HHHHTCCTTCCCCHHHHH
T ss_pred             HHHhcCChhhCcCHHHHH
Confidence            9999999     666654

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.96  E-value=4e-29  Score=243.39  Aligned_cols=207  Identities=12%  Similarity=-0.021  Sum_probs=162.1

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||.||+|++      ||+|++.....     ......+.+.+|+.+++.++|        ||    |++
T Consensus        33 y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~-----~~~~~~~~~~~e~~~l~~l~h--------p~----iv~   95 (286)
T 3uqc_A           33 YRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGV-----LPDDVLQETLSRTLRLSRIDK--------PG----VAR   95 (286)
T ss_dssp             EEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCC-----SCHHHHHHHHHHHHHHHTCCC--------TT----BCC
T ss_pred             EEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccc-----cCHHHHHHHHHHHHHHhcCCC--------CC----cce
Confidence            49999999999999999974      99999875432     223344778999999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--CCHHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--LNINEARSLLVQVTAGLAV  285 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--l~~~~~~~i~~Qil~gL~y  285 (447)
                      +++++..                              ++..|+||||+.|| +|.+++.  ....++..++.||+.||+|
T Consensus        96 ~~~~~~~------------------------------~~~~~lv~e~~~g~-~L~~~l~~~~~~~~~~~i~~ql~~aL~~  144 (286)
T 3uqc_A           96 VLDVVHT------------------------------RAGGLVVAEWIRGG-SLQEVADTSPSPVGAIRAMQSLAAAADA  144 (286)
T ss_dssp             EEEEEEE------------------------------TTEEEEEEECCCEE-EHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEE------------------------------CCcEEEEEEecCCC-CHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            9999654                              46699999999987 9999987  6667888999999999999


Q ss_pred             HHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEEEEecCCCCCCCCCCCCCc
Q 013230          286 AEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDK  365 (447)
Q Consensus       286 lH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i~~~~~~~pelf~g~~~~~  365 (447)
                      ||+ .||+||||||+|||++.++                    .+||+++|..               +       ..+.
T Consensus       145 lH~-~givH~Dikp~NIll~~~g--------------------~~kl~~~~~~---------------~-------~~~~  181 (286)
T 3uqc_A          145 AHR-AGVALSIDHPSRVRVSIDG--------------------DVVLAYPATM---------------P-------DANP  181 (286)
T ss_dssp             HHH-TTCCCCCCSGGGEEEETTS--------------------CEEECSCCCC---------------T-------TCCH
T ss_pred             HHH-CCCccCCCCcccEEEcCCC--------------------CEEEEecccc---------------C-------CCCc
Confidence            999 9999999999999999987                    7999866532               1       2456


Q ss_pred             hHHHHHhhccCCcccccCCCCCChhHHHHHH---HHHHhhccCCCC----CccchHHHHHHHHHhcccc----CHHHHHc
Q 013230          366 QFDTYRKMKKVTEDQWEGSFPKTNVLWLVYL---VDMLLLKKTFDR----SSKDERDLRSLKKRLDKYN----SAKEAIF  434 (447)
Q Consensus       366 ~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~---~~~l~~~~~~~~----~~~~s~~l~dLl~~mL~~d----sa~elL~  434 (447)
                      +.|||+ +|.+.+++++|..||........+   ...+  ....+.    ...+++++++||.+||..|    ||.|+++
T Consensus       182 ~~Di~s-lG~il~elltg~~Pf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rs~~el~~  258 (286)
T 3uqc_A          182 QDDIRG-IGASLYALLVNRWPLPEAGVRSGLAPAERDT--AGQPIEPADIDRDIPFQISAVAARSVQGDGGIRSASTLLN  258 (286)
T ss_dssp             HHHHHH-HHHHHHHHHHSEECSCCCSBCCCSEECCBCT--TSCBCCHHHHCTTSCHHHHHHHHHHHCTTSSCCCHHHHHH
T ss_pred             hhHHHH-HHHHHHHHHHCCCCCCcCCcchhhHHHHHHh--ccCCCChhhcccCCCHHHHHHHHHHcccCCccCCHHHHHH
Confidence            679999 999999999998887642110000   0000  001111    2457899999999999999    8888775

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.96  E-value=8.4e-30  Score=276.91  Aligned_cols=225  Identities=16%  Similarity=0.134  Sum_probs=173.7

Q ss_pred             CcceEEeccccceEEEEece-------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          134 PENIVKVGEGTFGEAFLAGN-------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~-------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      |++++.||+|+||.||+|.+       ||+|++....       .......+.+|+.+++.++|        ||    |+
T Consensus        82 y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~-------~~~~~~~~~~E~~~l~~l~h--------p~----iv  142 (681)
T 2pzi_A           82 YEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSG-------DAEAQAMAMAERQFLAEVVH--------PS----IV  142 (681)
T ss_dssp             EEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSC-------CHHHHHHHHHHHGGGGGCCC--------TT----BC
T ss_pred             eEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccC-------CHHHHHHHHHHHHHHHhcCC--------CC----cC
Confidence            49999999999999999962       8999876331       22344678899999999988        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--CCHHHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--l~~~~~~~i~~Qil~gL~  284 (447)
                      ++++++...+..                         .....||||||+.|| +|.+++.  +++.+++.++.||+.||.
T Consensus       143 ~~~~~~~~~~~~-------------------------~~~~~~lv~E~~~g~-~L~~~~~~~l~~~~~~~~~~qi~~aL~  196 (681)
T 2pzi_A          143 QIFNFVEHTDRH-------------------------GDPVGYIVMEYVGGQ-SLKRSKGQKLPVAEAIAYLLEILPALS  196 (681)
T ss_dssp             CEEEEEEEECTT-------------------------SCEEEEEEEECCCCE-ECC----CCCCHHHHHHHHHHHHHHHH
T ss_pred             eEeeeEeecCCC-------------------------CCceeEEEEEeCCCC-cHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            999997653310                         112269999999987 9998876  999999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE-EEEecCCCCCCCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI-FFLDLSQDPELFSGPKG  363 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~-i~~~~~~~pelf~g~~~  363 (447)
                      |||+ .|||||||||+|||++.+                     .+||+|||+++.....+. .....|++||++.+. .
T Consensus       197 ~lH~-~giiHrDlkp~NIll~~~---------------------~~kl~DFG~a~~~~~~~~~~gt~~y~aPE~~~~~-~  253 (681)
T 2pzi_A          197 YLHS-IGLVYNDLKPENIMLTEE---------------------QLKLIDLGAVSRINSFGYLYGTPGFQAPEIVRTG-P  253 (681)
T ss_dssp             HHHH-TTEECCCCSGGGEEECSS---------------------CEEECCCTTCEETTCCSCCCCCTTTSCTTHHHHC-S
T ss_pred             HHHH-CCCeecccChHHeEEeCC---------------------cEEEEecccchhcccCCccCCCccccCHHHHcCC-C
Confidence            9999 999999999999999875                     599999999988765533 234558999999774 3


Q ss_pred             CchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC---CccchHHHHHHHHHhcccc-----CHHHHHcC
Q 013230          364 DKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR---SSKDERDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       364 ~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~---~~~~s~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      ..+.|||+ +|++.++++.+..|+.....           ...+.   ....++.+.+||.+||..|     ++.+++.|
T Consensus       254 ~~~sDi~s-lG~~l~~l~~g~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~  321 (681)
T 2pzi_A          254 TVATDIYT-VGRTLAALTLDLPTRNGRYV-----------DGLPEDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSA  321 (681)
T ss_dssp             CHHHHHHH-HHHHHHHHHSCCCEETTEEC-----------SSCCTTCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHH
T ss_pred             CCceehhh-hHHHHHHHHhCCCCCccccc-----------ccccccccccccCHHHHHHHhhhccCChhhCCCHHHHHHH
Confidence            66779999 99999999988776653210           01111   1124678999999999999     67777777


Q ss_pred             CCC
Q 013230          436 PFF  438 (447)
Q Consensus       436 Pff  438 (447)
                      +|+
T Consensus       322 ~l~  324 (681)
T 2pzi_A          322 QLT  324 (681)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.93  E-value=1.1e-26  Score=247.18  Aligned_cols=177  Identities=16%  Similarity=0.062  Sum_probs=115.9

Q ss_pred             eccccceEEEEec------eeEEEEEecCCCccc--ccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeE
Q 013230          140 VGEGTFGEAFLAG------NTVCKVVPIDGDLKV--NGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEI  211 (447)
Q Consensus       140 LG~G~fG~V~~a~------~vAiK~i~~~~~~~~--~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~  211 (447)
                      ++.|++|.+..++      .+|+|++........  ....+...+++.+|+.+|+++.+  |     +|    |++++++
T Consensus       242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~--~-----~~----i~~~~~~  310 (569)
T 4azs_A          242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPA--G-----FD----APAVLAH  310 (569)
T ss_dssp             -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCT--T-----CC----CCCEEEE
T ss_pred             cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCC--C-----CC----eeEEEEE
Confidence            5566666655544      599999986543211  11223345679999999999953  1     56    9999999


Q ss_pred             EEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHHHH
Q 013230          212 KVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVAE  287 (447)
Q Consensus       212 ~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~ylH  287 (447)
                      +.                              +++.+||||||++|| +|.+++.    +++   ..|+.||+.||+|||
T Consensus       311 ~e------------------------------d~~~~yLVMEyv~G~-~L~d~i~~~~~l~~---~~I~~QIl~AL~ylH  356 (569)
T 4azs_A          311 GE------------------------------NAQSGWLVMEKLPGR-LLSDMLAAGEEIDR---EKILGSLLRSLAALE  356 (569)
T ss_dssp             EE------------------------------CSSEEEEEEECCCSE-EHHHHHHTTCCCCH---HHHHHHHHHHHHHHH
T ss_pred             EE------------------------------ECCEEEEEEecCCCC-cHHHHHHhCCCCCH---HHHHHHHHHHHHHHH
Confidence            54                              367799999999987 9999987    554   358999999999999


Q ss_pred             HhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCCCCCCC
Q 013230          288 AAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPELFSGPK  362 (447)
Q Consensus       288 ~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pelf~g~~  362 (447)
                      + +|||||||||+||||+.++                    .+||+|||+|+.....+     .++...|++||++.|. 
T Consensus       357 ~-~GIIHRDIKPeNILL~~dg--------------------~vKL~DFGlAr~~~~~~~~~~t~vGTp~YmAPE~l~g~-  414 (569)
T 4azs_A          357 K-QGFWHDDVRPWNVMVDARQ--------------------HARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNELFAEN-  414 (569)
T ss_dssp             H-TTCEESCCCGGGEEECTTS--------------------CEEECCCTTEESCC---CCSHHHHHHHHHHHHHHC----
T ss_pred             H-CCceeccCchHhEEECCCC--------------------CEEEeecccCeeCCCCCccccCceechhhccHHHhCCC-
Confidence            9 9999999999999999987                    79999999999765542     2334458899999884 


Q ss_pred             CCchHHHHHhhccCCcccccCC
Q 013230          363 GDKQFDTYRKMKKVTEDQWEGS  384 (447)
Q Consensus       363 ~~~~~di~s~lg~~~~~~~~~~  384 (447)
                      .....++|+ +|...++++.+.
T Consensus       415 ~~~~~d~~s-~g~~~~~l~~~~  435 (569)
T 4azs_A          415 KSWNGFWRS-APVHPFNLPQPW  435 (569)
T ss_dssp             ---------------CCCCTTH
T ss_pred             CCCcccccc-cccchhhhcccc
Confidence            455568888 777777666554

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.88  E-value=3e-22  Score=194.72  Aligned_cols=139  Identities=19%  Similarity=0.116  Sum_probs=104.7

Q ss_pred             CCCcceEEeccccceEEEEec-----eeEEEEEecCCCcccccc--cc--------cchHHHHHHHHHHHhccccccCCC
Q 013230          132 SDPENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGE--AQ--------KKSEELLEEVVLSWTLNHLRRNEG  196 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~--~~--------~~~~~~~~Ei~il~~L~h~~~~~~  196 (447)
                      ..|++.+.||+|+||.||+|+     .||+|+++..........  ..        .....+.+|+.+|+.++|      
T Consensus        90 ~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~------  163 (282)
T 1zar_A           90 KVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQG------  163 (282)
T ss_dssp             SCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTT------
T ss_pred             eEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccC------
Confidence            345788999999999999997     499999865321000000  00        124568899999999974      


Q ss_pred             CCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhcCCHHHHHHHH
Q 013230          197 DTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLL  276 (447)
Q Consensus       197 ~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~l~~~~~~~i~  276 (447)
                        ++    +..+++.                                  +..|+||||++|| +|.+ +..  ..+..++
T Consensus       164 --~~----v~~~~~~----------------------------------~~~~lvmE~~~g~-~L~~-l~~--~~~~~i~  199 (282)
T 1zar_A          164 --LA----VPKVYAW----------------------------------EGNAVLMELIDAK-ELYR-VRV--ENPDEVL  199 (282)
T ss_dssp             --SS----SCCEEEE----------------------------------ETTEEEEECCCCE-EGGG-CCC--SCHHHHH
T ss_pred             --CC----cCeEEec----------------------------------cceEEEEEecCCC-cHHH-cch--hhHHHHH
Confidence              33    4444332                                  3479999999988 9988 433  4466799


Q ss_pred             HHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC
Q 013230          277 VQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT  342 (447)
Q Consensus       277 ~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~  342 (447)
                      .||+.||.|||+ +||+||||||+|||++ ++                    .+||+|||+|+...
T Consensus       200 ~qi~~~l~~lH~-~giiHrDlkp~NILl~-~~--------------------~vkl~DFG~a~~~~  243 (282)
T 1zar_A          200 DMILEEVAKFYH-RGIVHGDLSQYNVLVS-EE--------------------GIWIIDFPQSVEVG  243 (282)
T ss_dssp             HHHHHHHHHHHH-TTEECSCCSTTSEEEE-TT--------------------EEEECCCTTCEETT
T ss_pred             HHHHHHHHHHHH-CCCEeCCCCHHHEEEE-CC--------------------cEEEEECCCCeECC
Confidence            999999999999 9999999999999999 66                    79999999997543

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.87  E-value=6.5e-24  Score=224.52  Aligned_cols=138  Identities=14%  Similarity=0.144  Sum_probs=101.4

Q ss_pred             ceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeE
Q 013230          136 NIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEI  211 (447)
Q Consensus       136 ~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~  211 (447)
                      ..+.||+|+||.||+|.    ++|+|+...+.............+.+.+|+.++++++|        ||    |+++..+
T Consensus       340 ~~~~LG~G~fg~Vy~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h--------~n----Iv~~~~~  407 (540)
T 3en9_A          340 PEHLIGKGAEADIKRDSYLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKD--------FG----IPAPYIF  407 (540)
T ss_dssp             --------CCEEEEEEECSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGG--------GT----CCCCCEE
T ss_pred             CCCEEeeCCCEEEEEEEECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCC--------CC----cCceEEE
Confidence            45789999999999775    58999765432210111111224568999999999998        88    8844444


Q ss_pred             EEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhcCCHHHHHHHHHHHHHHHHHHHHhCC
Q 013230          212 KVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAYE  291 (447)
Q Consensus       212 ~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~l~~~~~~~i~~Qil~gL~ylH~~~~  291 (447)
                      +..                              .+..||||||++|| +|.+++.-    ++.++.||+.||+|||+ +|
T Consensus       408 ~~~------------------------------~~~~~lVmE~~~gg-sL~~~l~~----~~~i~~qi~~aL~~LH~-~g  451 (540)
T 3en9_A          408 DVD------------------------------LDNKRIMMSYINGK-LAKDVIED----NLDIAYKIGEIVGKLHK-ND  451 (540)
T ss_dssp             EEE------------------------------TTTTEEEEECCCSE-EHHHHSTT----CTHHHHHHHHHHHHHHH-TT
T ss_pred             EEe------------------------------CCccEEEEECCCCC-CHHHHHHH----HHHHHHHHHHHHHHHHH-Cc
Confidence            322                              45579999999988 99998753    77899999999999999 99


Q ss_pred             eeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCC
Q 013230          292 FEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG  343 (447)
Q Consensus       292 iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~  343 (447)
                      |+||||||+|||++. .                     +||+|||+|+....
T Consensus       452 IiHrDiKp~NILl~~-~---------------------~kL~DFGla~~~~~  481 (540)
T 3en9_A          452 VIHNDLTTSNFIFDK-D---------------------LYIIDFGLGKISNL  481 (540)
T ss_dssp             EECTTCCTTSEEESS-S---------------------EEECCCTTCEECCC
T ss_pred             CccCCCCHHHEEECC-e---------------------EEEEECccCEECCC
Confidence            999999999999998 4                     99999999998755

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.82  E-value=2e-20  Score=179.29  Aligned_cols=142  Identities=13%  Similarity=0.033  Sum_probs=102.2

Q ss_pred             CcceEEeccccceEEEEece--------eEEEEEecCCCcccc------------c----ccccchHHHHHHHHHHHhcc
Q 013230          134 PENIVKVGEGTFGEAFLAGN--------TVCKVVPIDGDLKVN------------G----EAQKKSEELLEEVVLSWTLN  189 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~--------vAiK~i~~~~~~~~~------------~----~~~~~~~~~~~Ei~il~~L~  189 (447)
                      |++.+.||+|+||.||+|.+        ||+|+++........            .    ........+.+|+.+|+.|.
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            47889999999999999974        999987643210000            0    00011236789999999998


Q ss_pred             ccccCCCCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecC-c---cchhhhh
Q 013230          190 HLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHG-G---KDLESFV  265 (447)
Q Consensus       190 h~~~~~~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~g-G---~~L~~~i  265 (447)
                      |        ++.  .+...++.                                  +..||||||+.+ |   ..|.++.
T Consensus       129 ~--------~~i--~~p~~~~~----------------------------------~~~~lVmE~~g~~g~~~~~L~~~~  164 (258)
T 1zth_A          129 E--------AGV--SVPQPYTY----------------------------------MKNVLLMEFIGEDELPAPTLVELG  164 (258)
T ss_dssp             H--------TTC--CCCCEEEE----------------------------------ETTEEEEECCEETTEECCBHHHHG
T ss_pred             h--------CCC--CCCeEEEc----------------------------------CCCEEEEEecCCCCCccccHHHHh
Confidence            8        541  02222222                                  236899999942 3   3566554


Q ss_pred             c-CCHHHHHHHHHHHHHHHHHHH-HhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC
Q 013230          266 L-LNINEARSLLVQVTAGLAVAE-AAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT  342 (447)
Q Consensus       266 ~-l~~~~~~~i~~Qil~gL~ylH-~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~  342 (447)
                      . .++..+..++.||+.||.||| + +||+||||||+|||++. .                     ++|+|||+|....
T Consensus       165 ~~~~~~~~~~i~~qi~~~l~~lH~~-~givHrDlkp~NILl~~-~---------------------~~liDFG~a~~~~  220 (258)
T 1zth_A          165 RELKELDVEGIFNDVVENVKRLYQE-AELVHADLSEYNIMYID-K---------------------VYFIDMGQAVTLR  220 (258)
T ss_dssp             GGGGGSCHHHHHHHHHHHHHHHHHT-SCEECSSCSTTSEEESS-S---------------------EEECCCTTCEETT
T ss_pred             hccChHHHHHHHHHHHHHHHHHHHH-CCEEeCCCCHHHEEEcC-c---------------------EEEEECcccccCC
Confidence            3 445678899999999999999 8 99999999999999987 4                     8999999997653

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.69  E-value=3.1e-17  Score=165.34  Aligned_cols=159  Identities=14%  Similarity=0.107  Sum_probs=101.3

Q ss_pred             hhccCCCcceEEeccccceEEEEec-----eeEEEEEecCCCcc--cccc----cccchH--------HHHHHHHHHHhc
Q 013230          128 FSKYSDPENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLK--VNGE----AQKKSE--------ELLEEVVLSWTL  188 (447)
Q Consensus       128 ~~~y~~~~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~--~~~~----~~~~~~--------~~~~Ei~il~~L  188 (447)
                      ..+-.-|++..+||.|+||.||+|.     .||+|+++......  ....    ......        ...+|...|.+|
T Consensus        91 ~~rg~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL  170 (397)
T 4gyi_A           91 AARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKAL  170 (397)
T ss_dssp             HHTTSCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence            3332336999999999999999997     49999876432100  0000    000011        124567777777


Q ss_pred             cccccCCCCCCCcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhcCC
Q 013230          189 NHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLN  268 (447)
Q Consensus       189 ~h~~~~~~~~~n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~l~  268 (447)
                      .+        ... + +...++.                                  ...+|||||+.|+ +|.++... 
T Consensus       171 ~~--------~gv-~-vp~p~~~----------------------------------~~~~LVME~i~G~-~L~~l~~~-  204 (397)
T 4gyi_A          171 YE--------EGF-P-VPEPIAQ----------------------------------SRHTIVMSLVDAL-PMRQVSSV-  204 (397)
T ss_dssp             HH--------TTC-S-CCCEEEE----------------------------------ETTEEEEECCSCE-EGGGCCCC-
T ss_pred             Hh--------cCC-C-CCeeeec----------------------------------cCceEEEEecCCc-cHhhhccc-
Confidence            54        220 0 1222222                                  1247999999866 88877543 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC
Q 013230          269 INEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE  344 (447)
Q Consensus       269 ~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~  344 (447)
                       ..++.++.||+.||.|||+ +|||||||||+|||++.++...          ........+.||||+-+.....+
T Consensus       205 -~~~~~l~~qll~~l~~lH~-~gIVHrDLKp~NILl~~dgd~~----------d~~~~~~~~~iID~~Q~V~~~hp  268 (397)
T 4gyi_A          205 -PDPASLYADLIALILRLAK-HGLIHGDFNEFNILIREEKDAE----------DPSSITLTPIIIXFPQMVSMDHP  268 (397)
T ss_dssp             -SCHHHHHHHHHHHHHHHHH-TTEECSCCSTTSEEEEEEECSS----------CTTSEEEEEEECCCTTCEETTST
T ss_pred             -HHHHHHHHHHHHHHHHHHH-CCCcCCCCCHHHEEEeCCCCcc----------cccccccceEEEEeCCcccCCCC
Confidence             3567789999999999999 9999999999999999875200          00000114889999977654433

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.17  E-value=2e-10  Score=108.99  Aligned_cols=137  Identities=10%  Similarity=0.052  Sum_probs=100.6

Q ss_pred             CCcceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          133 DPENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      +|++...+|.|+++.||++.    .+++|+.+....        .....+.+|+.+++.|..  +     .+    +.++
T Consensus        15 ~~~~~~~~~g~s~~~v~~~~~~~~~~vlK~~~~~~~--------~~~~~~~~E~~~l~~l~~--~-----~~----vP~v   75 (263)
T 3tm0_A           15 KYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYK--------GTTYDVEREKDMMLWLEG--K-----LP----VPKV   75 (263)
T ss_dssp             TSEEEECCSCCSSSEEEEEECSSCEEEEEEECGGGT--------TSTTCHHHHHHHHHHHTT--T-----SC----CCCE
T ss_pred             cceeEeeccCCCCCeEEEEECCCCcEEEEeCCcccC--------CCHHHHHHHHHHHHHHhc--C-----CC----CCeE
Confidence            34888999999999999986    599998764210        112357899999999964  1     23    5566


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhcCCHHHHHHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEA  288 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~l~~~~~~~i~~Qil~gL~ylH~  288 (447)
                      +++...                              .+..|+||||++|. +|.+.. .+......++.++..+|+.||+
T Consensus        76 ~~~~~~------------------------------~~~~~lv~e~i~G~-~l~~~~-~~~~~~~~~~~~l~~~l~~LH~  123 (263)
T 3tm0_A           76 LHFERH------------------------------DGWSNLLMSEADGV-LCSEEY-EDEQSPEKIIELYAECIRLFHS  123 (263)
T ss_dssp             EEEEEE------------------------------TTEEEEEEECCSSE-EHHHHC-CTTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEec------------------------------CCceEEEEEecCCe-ehhhcc-CCcccHHHHHHHHHHHHHHHhC
Confidence            665332                              45689999999854 887753 2333445788999999999998


Q ss_pred             h----------------------------------------------------------CCeeeccCCCCCEEEecCCCc
Q 013230          289 A----------------------------------------------------------YEFEHRDLHWGNVLLSRNDSV  310 (447)
Q Consensus       289 ~----------------------------------------------------------~~iiHrDLKpeNILl~~~~~~  310 (447)
                      .                                                          ..++|+|++|+|||++.+.  
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~--  201 (263)
T 3tm0_A          124 IDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGK--  201 (263)
T ss_dssp             SCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTE--
T ss_pred             CCcccCCCcchHHHHHHHHHHHHhccccccccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCc--
Confidence            0                                                          3489999999999997653  


Q ss_pred             cccccccCcccccccCCCcEEEeeccceee
Q 013230          311 TMNFLLDGKQMFVRTFGLSVTIIDFTLSRI  340 (447)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~vkL~DFGla~~  340 (447)
                                        .+.|+||+.+..
T Consensus       202 ------------------~~~lIDwe~a~~  213 (263)
T 3tm0_A          202 ------------------VSGFIDLGRSGR  213 (263)
T ss_dssp             ------------------EEEECCCTTCEE
T ss_pred             ------------------EEEEEEchhccc
Confidence                              467999997654

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.13  E-value=1.7e-10  Score=108.58  Aligned_cols=127  Identities=12%  Similarity=0.076  Sum_probs=87.7

Q ss_pred             eEEec-cccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeee
Q 013230          137 IVKVG-EGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       137 ~~~LG-~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      +..++ .|..+.||++.     .+++|+....           ....+.+|+.+++.|.+        .+.  .+.+++.
T Consensus        24 ~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~-----------~~~~~~~E~~~l~~l~~--------~~~--~vP~~~~   82 (264)
T 1nd4_A           24 WAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG-----------ALNELQDEAARLSWLAT--------TGV--PCAAVLD   82 (264)
T ss_dssp             EEECSCTTSSCEEEEEECTTSCCEEEEEECSC-----------TTSCHHHHHHHHHHHHT--------TTC--CBCCEEE
T ss_pred             eEecccCCCCceEEEEecCCCCeEEEEeCCcc-----------cchhhhHHHHHHHHHHh--------CCC--CCCeEEE
Confidence            34454 66679999986     3889986522           11346899999999976        221  0344555


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhcCCHHHHHHHHHHHHHHHHHHHHhC
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAY  290 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~l~~~~~~~i~~Qil~gL~ylH~~~  290 (447)
                      +...                              .+..|+||||++|+ +|. +-...   ...++.|+...|+.||+ .
T Consensus        83 ~~~~------------------------------~~~~~~v~e~i~G~-~l~-~~~~~---~~~~~~~l~~~l~~lh~-~  126 (264)
T 1nd4_A           83 VVTE------------------------------AGRDWLLLGEVPGQ-DLL-SSHLA---PAEKVSIMADAMRRLHT-L  126 (264)
T ss_dssp             EEEC------------------------------SSCEEEEEECCSSE-ETT-TSCCC---HHHHHHHHHHHHHHHTT-S
T ss_pred             eccC------------------------------CCCCEEEEEecCCc-ccC-cCcCC---HhHHHHHHHHHHHHHhC-C
Confidence            5221                              34589999999965 874 22122   23567888888888886 4


Q ss_pred             C----------------------------------------------------------eeeccCCCCCEEEecCCCccc
Q 013230          291 E----------------------------------------------------------FEHRDLHWGNVLLSRNDSVTM  312 (447)
Q Consensus       291 ~----------------------------------------------------------iiHrDLKpeNILl~~~~~~~~  312 (447)
                      .                                                          ++|+|++|+|||++.++    
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~----  202 (264)
T 1nd4_A          127 DPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGR----  202 (264)
T ss_dssp             CGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTE----
T ss_pred             CCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCc----
Confidence            3                                                          99999999999997654    


Q ss_pred             cccccCcccccccCCCcEEEeeccceee
Q 013230          313 NFLLDGKQMFVRTFGLSVTIIDFTLSRI  340 (447)
Q Consensus       313 ~~~~~~~~~~~~~~~~~vkL~DFGla~~  340 (447)
                                      .+.|+|||.|..
T Consensus       203 ----------------~~~liD~~~a~~  214 (264)
T 1nd4_A          203 ----------------FSGFIDCGRLGV  214 (264)
T ss_dssp             ----------------EEEECCCTTCEE
T ss_pred             ----------------EEEEEcchhccc
Confidence                            467999998754

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=99.00  E-value=1.4e-09  Score=108.17  Aligned_cols=145  Identities=12%  Similarity=0.154  Sum_probs=100.1

Q ss_pred             cceEEeccccceEEEEec----eeEEEEEe--cCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAG----NTVCKVVP--IDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~----~vAiK~i~--~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      ..++.|+.|.++.||++.    .+++|+.+  ...       .......+.+|+.+++.|.+. +     .+    +.++
T Consensus        41 ~~~~~l~~G~sn~~y~v~~~~~~~vlr~~~~p~~~-------~~~~~~~~~~E~~~l~~L~~~-~-----vp----vP~~  103 (359)
T 3dxp_A           41 LSVEQFKGGQSNPTFKLVTPGQTYVMRAKPGPKSK-------LLPSAHAIEREYRVMDALAGT-D-----VP----VAKM  103 (359)
T ss_dssp             CEEEECCC-CCSCEEEEECSSCEEEEECCCC-----------------CHHHHHHHHHHHTTS-S-----SC----CCCE
T ss_pred             ceEEEcCCcccceEEEEEECCceEEEEeCCCCCCC-------CCCcHHHHHHHHHHHHHhhcC-C-----CC----CCcE
Confidence            457899999999999986    47777654  221       111234678999999999751 1     22    5555


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhh-hhc-CCHHHHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLES-FVL-LNINEARSLLVQVTAGLAVA  286 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~-~i~-l~~~~~~~i~~Qil~gL~yl  286 (447)
                      +.+...  .                         ...+..|+||||+.|. .+.+ ... ++..+...++.++..+|+.|
T Consensus       104 ~~~~~~--~-------------------------~~~g~~~~vme~v~G~-~l~~~~~~~l~~~~~~~~~~~l~~~La~L  155 (359)
T 3dxp_A          104 YALCED--E-------------------------SVIGRAFYIMEFVSGR-VLWDQSLPGMSPAERTAIYDEMNRVIAAM  155 (359)
T ss_dssp             EEEECC--T-------------------------TTTSSCEEEEECCCCB-CCCCTTCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCC--C-------------------------CccCCeEEEEEecCCe-ecCCCccccCCHHHHHHHHHHHHHHHHHH
Confidence            554211  0                         0014579999999854 7743 222 78888899999999999999


Q ss_pred             HHh---------------------------------------------------------CCeeeccCCCCCEEEecCCC
Q 013230          287 EAA---------------------------------------------------------YEFEHRDLHWGNVLLSRNDS  309 (447)
Q Consensus       287 H~~---------------------------------------------------------~~iiHrDLKpeNILl~~~~~  309 (447)
                      |+.                                                         ..++|+|++|+|||++.++.
T Consensus       156 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~  235 (359)
T 3dxp_A          156 HTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEP  235 (359)
T ss_dssp             HHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSS
T ss_pred             hCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCC
Confidence            971                                                         46999999999999997751


Q ss_pred             ccccccccCcccccccCCCcEEEeeccceeecC
Q 013230          310 VTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT  342 (447)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~  342 (447)
                                        -.+.|+||+.|....
T Consensus       236 ------------------~v~~viDwe~a~~g~  250 (359)
T 3dxp_A          236 ------------------RVLAVLDWELSTLGH  250 (359)
T ss_dssp             ------------------CEEEECCCTTCEEEC
T ss_pred             ------------------cEEEEECccccccCC
Confidence                              036899999987643

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.53  E-value=6.4e-07  Score=86.80  Aligned_cols=141  Identities=18%  Similarity=0.183  Sum_probs=97.0

Q ss_pred             ceEEeccccceEEEEec-eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEEEE
Q 013230          136 NIVKVGEGTFGEAFLAG-NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKVC  214 (447)
Q Consensus       136 ~~~~LG~G~fG~V~~a~-~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~~~  214 (447)
                      .++.++.|....||++. .+++|+.+..          .....+.+|+.+|+.|.+.       .. .| +.+.+.....
T Consensus        24 ~i~~~~~G~~n~v~~v~~~~vlR~~~~~----------~~~~~~~~E~~~l~~l~~~-------~~-v~-vP~~~~~~~~   84 (304)
T 3sg8_A           24 TIEISGEGNDCIAYEINRDFIFKFPKHS----------RGSTNLFNEVNILKRIHNK-------LP-LP-IPEVVFTGMP   84 (304)
T ss_dssp             CCCEEEECSSEEEEESTTSEEEEEESSH----------HHHHHHHHHHHHHHHHTTS-------SS-SC-CCCEEEECCC
T ss_pred             eeEecCCCCcceEEEECCEEEEEecCCc----------chHHHHHHHHHHHHHHHhc-------CC-CC-CCceEeecCC
Confidence            35679999999999986 5888874311          2346789999999988541       11 01 2233222000


Q ss_pred             eCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--CCHHHHHHHHHHHHHHHHHHHHh---
Q 013230          215 QGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--LNINEARSLLVQVTAGLAVAEAA---  289 (447)
Q Consensus       215 ~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--l~~~~~~~i~~Qil~gL~ylH~~---  289 (447)
                       +                          ..-...|+||++++| ..|.....  ++..+...++.|+...|+.||+.   
T Consensus        85 -~--------------------------~~~~~~~~vm~~i~G-~~l~~~~~~~l~~~~~~~~~~~l~~~la~LH~~~~~  136 (304)
T 3sg8_A           85 -S--------------------------ETYQMSFAGFTKIKG-VPLTPLLLNNLPKQSQNQAAKDLARFLSELHSINIS  136 (304)
T ss_dssp             -C--------------------------SSCSCSCEEEECCCC-EECCHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCT
T ss_pred             -C--------------------------CCCCcceEEEcccCC-eECCccccccCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence             0                          001235899999985 47765322  78888889999999999999950   


Q ss_pred             ------------------------------------------------------CCeeeccCCCCCEEEecC-CCccccc
Q 013230          290 ------------------------------------------------------YEFEHRDLHWGNVLLSRN-DSVTMNF  314 (447)
Q Consensus       290 ------------------------------------------------------~~iiHrDLKpeNILl~~~-~~~~~~~  314 (447)
                                                                            ..++|+|++|+|||++.+ +.     
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~-----  211 (304)
T 3sg8_A          137 GFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNT-----  211 (304)
T ss_dssp             TSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTE-----
T ss_pred             CCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCC-----
Confidence                                                                  247999999999999984 21     


Q ss_pred             cccCcccccccCCCcEEEeeccceeecC
Q 013230          315 LLDGKQMFVRTFGLSVTIIDFTLSRINT  342 (447)
Q Consensus       315 ~~~~~~~~~~~~~~~vkL~DFGla~~~~  342 (447)
                                    .+.|+||+.+....
T Consensus       212 --------------~~~~iD~~~~~~~~  225 (304)
T 3sg8_A          212 --------------ICGIIDFGDAAISD  225 (304)
T ss_dssp             --------------EEEECCCTTCEEEC
T ss_pred             --------------EEEEEeCCCCccCC
Confidence                          57899999887643

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.34  E-value=6.8e-06  Score=79.88  Aligned_cols=105  Identities=18%  Similarity=0.140  Sum_probs=66.5

Q ss_pred             cceEEeccccceEEEEec-eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeeeEEE
Q 013230          135 ENIVKVGEGTFGEAFLAG-NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKV  213 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~-~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~~~~  213 (447)
                      ..++.++.|....||+.. .+++|+-+ .         ......+.+|+.+|+.|.+. .     +-   .+.+.+.+..
T Consensus        22 ~~v~~l~~G~~n~v~~vg~~~VlR~~~-~---------~~~~~~~~~E~~~L~~L~~~-~-----~v---~VP~~~~~~~   82 (306)
T 3tdw_A           22 QSVESLGEGFRNYAILVNGDWVFRFPK-S---------QQGADELNKEIQLLPLLVGC-V-----KV---NIPQYVYIGK   82 (306)
T ss_dssp             SCEEEEEECSSEEEEEETTTEEEEEES-S---------HHHHHHHHHHHHHHHHHTTT-C-----SS---BCCCEEEEEE
T ss_pred             eeeeecCCCcceeEEEECCEEEEEecC-C---------chHHHHHHHHHHHHHHHHhc-C-----CC---CCCCeEeecc
Confidence            456788999999999874 58888732 1         12346789999999999751 0     10   1333333311


Q ss_pred             EeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhh-c-CCHHHHHHHHHHHHHHHHHHHH
Q 013230          214 CQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFV-L-LNINEARSLLVQVTAGLAVAEA  288 (447)
Q Consensus       214 ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i-~-l~~~~~~~i~~Qil~gL~ylH~  288 (447)
                      .                             ..+..|+|||+++| ..|.... . ++..+...+..|+...|+.||+
T Consensus        83 ~-----------------------------~~g~~~~v~e~i~G-~~l~~~~~~~l~~~~~~~~~~~lg~~La~LH~  129 (306)
T 3tdw_A           83 R-----------------------------SDGNPFVGYRKVQG-QILGEDGMAVLPDDAKDRLALQLAEFMNELSA  129 (306)
T ss_dssp             C-----------------------------TTSCEEEEEECCCS-EECHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             c-----------------------------CCCceEEEEeccCC-eECchhhhhhCCHHHHHHHHHHHHHHHHHHhc
Confidence            0                             13457899999985 4776532 1 5666666666666666666664

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.09  E-value=3.8e-05  Score=72.48  Aligned_cols=130  Identities=12%  Similarity=0.073  Sum_probs=85.3

Q ss_pred             EEeccccce-EEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeeee
Q 013230          138 VKVGEGTFG-EAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFE  210 (447)
Q Consensus       138 ~~LG~G~fG-~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~~  210 (447)
                      +.+..|..| .||+..      .+++|+-+..           ....+.+|..+|+.|..         . .| +.+++.
T Consensus        30 ~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~-----------~~~~~~~E~~~l~~l~~---------~-vP-VP~v~~   87 (272)
T 4gkh_A           30 ARDNVGQSGATIYRLYGKPNAPELFLKHGKGS-----------VANDVTDEMVRLNWLTA---------F-MP-LPTIKH   87 (272)
T ss_dssp             EEEECSSSSCEEEEEECCTTCCCEEEEEEETH-----------HHHHHHHHHHHHHHHTT---------T-SC-CCCEEE
T ss_pred             EEccCCCcCCeEEEEEecCCCeEEEEEECCCC-----------CHhHHHHHHHHHHHhcc---------C-CC-cCeEEE
Confidence            455556555 688753      3788876521           23567899999998864         1 11 344444


Q ss_pred             EEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhcCCHHHHHHHHHHHHHHHHHHHHh-
Q 013230          211 IKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAA-  289 (447)
Q Consensus       211 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~l~~~~~~~i~~Qil~gL~ylH~~-  289 (447)
                      +...                              .+.-|+|||+++| .++.+...........+..++...|+-||+. 
T Consensus        88 ~~~~------------------------------~~~~~lvme~l~G-~~~~~~~~~~~~~~~~~~~~l~~~L~~Lh~~~  136 (272)
T 4gkh_A           88 FIRT------------------------------PDDAWLLTTAIPG-KTAFQVLEEYPDSGENIVDALAVFLRRLHSIP  136 (272)
T ss_dssp             EEEE------------------------------TTEEEEEEECCCS-EEHHHHHHHCGGGHHHHHHHHHHHHHHHHTSC
T ss_pred             EEEE------------------------------CCeEEEEEEeeCC-ccccccccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            4222                              4568999999985 4777654433333445666666666666630 


Q ss_pred             --------------------------------------------------------CCeeeccCCCCCEEEecCCCcccc
Q 013230          290 --------------------------------------------------------YEFEHRDLHWGNVLLSRNDSVTMN  313 (447)
Q Consensus       290 --------------------------------------------------------~~iiHrDLKpeNILl~~~~~~~~~  313 (447)
                                                                              ..++|+|++|.|||++..+     
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~-----  211 (272)
T 4gkh_A          137 VCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGK-----  211 (272)
T ss_dssp             GGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTE-----
T ss_pred             cccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCe-----
Confidence                                                                    1278999999999998764     


Q ss_pred             ccccCcccccccCCCcEEEeeccceee
Q 013230          314 FLLDGKQMFVRTFGLSVTIIDFTLSRI  340 (447)
Q Consensus       314 ~~~~~~~~~~~~~~~~vkL~DFGla~~  340 (447)
                                     .+-|+||+.+..
T Consensus       212 ---------------~~~viDwe~a~~  223 (272)
T 4gkh_A          212 ---------------LIGCIDVGRVGI  223 (272)
T ss_dssp             ---------------EEEECCCTTCEE
T ss_pred             ---------------EEEEEECccccc
Confidence                           567999998765

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=98.07  E-value=6.6e-06  Score=82.69  Aligned_cols=54  Identities=11%  Similarity=0.031  Sum_probs=34.5

Q ss_pred             ceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccc
Q 013230          136 NIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNH  190 (447)
Q Consensus       136 ~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h  190 (447)
                      .++.||.|.++.||++.      .+++|........ .........+....|..+++.+..
T Consensus        34 ~~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~-~~~~~~~~~~r~~~E~~~L~~l~~   93 (397)
T 2olc_A           34 TCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKV-VGESWPLTIDRARIESSALIRQGE   93 (397)
T ss_dssp             EEEECCSSSSEEEEEEEC----CEEEEEEECCC--------CCCCTTHHHHHHHHHHHHHT
T ss_pred             EEEECCCCceEEEEEEEECCCCcEEEEEecchhhcc-cCCCCcCcHHHHHHHHHHHHHhhh
Confidence            46789999999999993      3889976532110 000111233567889999998864

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=97.85  E-value=6.3e-05  Score=74.16  Aligned_cols=32  Identities=22%  Similarity=0.334  Sum_probs=26.8

Q ss_pred             CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeec
Q 013230          290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRIN  341 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~  341 (447)
                      ..++|+|++|+|||++.+.                    .+.|+||+.|...
T Consensus       222 ~~l~HgDl~~~Nil~~~~~--------------------~~~vIDwe~a~~g  253 (357)
T 3ats_A          222 PVLLWGDARVGNVLYRDFQ--------------------PVAVLDWEMVALG  253 (357)
T ss_dssp             CEEECSSCSGGGEEEETTE--------------------EEEECCGGGCEEE
T ss_pred             ceEEeCCCCCCeEEEeCCc--------------------EEEEEcccccccC
Confidence            5799999999999999532                    4789999988764

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=97.80  E-value=0.00015  Score=70.43  Aligned_cols=32  Identities=28%  Similarity=0.460  Sum_probs=27.8

Q ss_pred             CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeec
Q 013230          290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRIN  341 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~  341 (447)
                      .+++|+|++++|||++.++                    .+.|+||+.+...
T Consensus       222 ~~l~HgD~~~~Nil~~~~~--------------------~~~lIDfe~a~~g  253 (346)
T 2q83_A          222 PNLCHQDYGTGNTLLGENE--------------------QIWVIDLDTVSFD  253 (346)
T ss_dssp             CCEECSSCSTTSEEECGGG--------------------CEEECCCTTCEEC
T ss_pred             CceecCCCCcccEEEeCCC--------------------cEEEEehhhcccC
Confidence            7899999999999997665                    6999999987653

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=97.66  E-value=0.00032  Score=67.52  Aligned_cols=45  Identities=13%  Similarity=0.066  Sum_probs=32.2

Q ss_pred             eEEeccccceEEEEeceeEEEEEecCCCcccccccccchHHHHHHHHHHHhccc
Q 013230          137 IVKVGEGTFGEAFLAGNTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNH  190 (447)
Q Consensus       137 ~~~LG~G~fG~V~~a~~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h  190 (447)
                      ++.|+.|....+|++..+++|+......         ......+|+.+++.+..
T Consensus        23 i~~l~gG~tN~~~~~~~~vlR~~~~~~~---------~~~~r~~E~~~l~~l~~   67 (301)
T 3dxq_A           23 PLERLGGLTNLVFRAGDLCLRIPGKGTE---------EYINRANEAVAAREAAK   67 (301)
T ss_dssp             CEEEESCSSEEEEEETTEEEEEECC-------------CCCHHHHHHHHHHHHH
T ss_pred             eeEcCCccccccceeeeEEEECCCCCcc---------ceeCHHHHHHHHHHHHH
Confidence            6889999999999997788887653211         01123579999988876

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=97.16  E-value=0.0018  Score=62.59  Aligned_cols=45  Identities=16%  Similarity=0.087  Sum_probs=29.4

Q ss_pred             ceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccc
Q 013230          136 NIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNH  190 (447)
Q Consensus       136 ~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h  190 (447)
                      .++.|+.|....||++.    .+++|+....          ...+.+..|+.+++.|..
T Consensus        26 ~~~~i~~G~~n~~~~v~~~~g~~vlk~~~~~----------~~~~~l~~e~~~l~~L~~   74 (322)
T 2ppq_A           26 SYKGIAEGVENSNFLLHTTKDPLILTLYEKR----------VEKNDLPFFLGLMQHLAA   74 (322)
T ss_dssp             EEEEECC---EEEEEEEESSCCEEEEEECC-------------CCHHHHHHHHHHHHHH
T ss_pred             EeeccCCCcccceEEEEeCCccEEEEEeCCC----------CCHHHHHHHHHHHHHHHH
Confidence            46778889999999986    4888877631          012456789999988865

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=97.13  E-value=0.00084  Score=67.89  Aligned_cols=32  Identities=31%  Similarity=0.474  Sum_probs=28.1

Q ss_pred             CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC
Q 013230          290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT  342 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~  342 (447)
                      ..++|+|++|+|||++.+                     .++|+||+.+....
T Consensus       232 ~~liHGDl~~~Nil~~~~---------------------~~~lID~e~a~~G~  263 (420)
T 2pyw_A          232 QALIHGDLHTGSVMVTQD---------------------STQVIDPEFSFYGP  263 (420)
T ss_dssp             CEEECSCCSGGGEEECSS---------------------CEEECCCTTCEEEC
T ss_pred             CeEEecCCCCCcEEEeCC---------------------CCEEEeCcccccCc
Confidence            789999999999999876                     38999999987754

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=96.66  E-value=0.0079  Score=57.21  Aligned_cols=48  Identities=13%  Similarity=0.035  Sum_probs=35.5

Q ss_pred             cceEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccc
Q 013230          135 ENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNH  190 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h  190 (447)
                      ..++.+|.|..+.||+..     .+++|+-+...        ......+..|+..|+.|..
T Consensus        18 ~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~--------~~~~~~~~~Ea~~L~~L~~   70 (288)
T 3f7w_A           18 AAVAERGHSHRWHLYRVELADGTPLFVKALPDDA--------PALDGLFRAEALGLDWLGR   70 (288)
T ss_dssp             EEEEEEEEETTEEEEEEEETTSCEEEEEECCTTC--------CCCTTHHHHHHHHHHHHTC
T ss_pred             EEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCC--------cchhhHHHHHHHHHHHHHh
Confidence            567889999999999986     48888755221        1223457889999999864

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=96.64  E-value=0.014  Score=56.70  Aligned_cols=45  Identities=16%  Similarity=0.096  Sum_probs=34.9

Q ss_pred             cceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccc
Q 013230          135 ENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNH  190 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h  190 (447)
                      ..++.|+.|....+|+..    .+++|+-+..           ....+.+|...|+.|..
T Consensus        39 ~~~~~l~gG~~n~~y~v~~~~~~~vlK~~~~~-----------~~~~~~~E~~~L~~L~~   87 (312)
T 3jr1_A           39 KHKEKLYSGEMNEIWLINDEVQTVFVKINERS-----------YRSMFRAEADQLALLAK   87 (312)
T ss_dssp             CEEEEECCSSSSEEEEEESSSCEEEEEEEEGG-----------GHHHHHHHHHHHHHHHH
T ss_pred             eeeEEeCCccceeeeEEEECCCeEEEEeCCcc-----------cHHHHHHHHHHHHHHHh
Confidence            456889999999999986    4888876521           24567899999999865

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=96.22  E-value=0.017  Score=56.93  Aligned_cols=31  Identities=32%  Similarity=0.529  Sum_probs=25.4

Q ss_pred             CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeec
Q 013230          290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRIN  341 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~  341 (447)
                      ..++|+|+++.|||++.+                     .+.|+||..|...
T Consensus       212 ~~l~HgDl~~~Nil~~~~---------------------~~~lID~e~a~~g  242 (369)
T 3c5i_A          212 IVFCHNDLQENNIINTNK---------------------CLRLIDFEYSGFN  242 (369)
T ss_dssp             EEEECSCCCGGGEEECC----------------------CEEECCCTTCEEE
T ss_pred             eEEEeCCCCcccEEecCC---------------------cEEEEEecCCCCC
Confidence            468999999999999755                     4899999887653

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=96.17  E-value=0.035  Score=56.27  Aligned_cols=45  Identities=20%  Similarity=0.234  Sum_probs=31.1

Q ss_pred             ceEEeccccceEEEEec-------------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccc
Q 013230          136 NIVKVGEGTFGEAFLAG-------------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNH  190 (447)
Q Consensus       136 ~~~~LG~G~fG~V~~a~-------------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h  190 (447)
                      .++.|+.|.-..||++.             .+++|+....          ...+.+.+|..+++.|..
T Consensus        77 ~v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~----------~~~~~li~E~~~l~~L~~  134 (429)
T 1nw1_A           77 RISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP----------ETESHLVAESVIFTLLSE  134 (429)
T ss_dssp             EEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC----------CCHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC----------CcHHHHHHHHHHHHHHHh
Confidence            45788999999999886             2566654210          111456689999999876

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=96.08  E-value=0.045  Score=52.63  Aligned_cols=45  Identities=13%  Similarity=0.153  Sum_probs=31.4

Q ss_pred             ceEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccc
Q 013230          136 NIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNH  190 (447)
Q Consensus       136 ~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h  190 (447)
                      .+..|+ |.-..||++.     .+++|+.....         .....+..|..+++.|..
T Consensus        30 ~~~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~---------~~~~~~~~E~~~~~~L~~   79 (328)
T 1zyl_A           30 GLTPLN-SYENRVYQFQDEDRRRFVVKFYRPER---------WTADQILEEHQFALQLVN   79 (328)
T ss_dssp             CCEEEC-CSSSEEEEECCTTCCCEEEEEECTTT---------SCHHHHHHHHHHHHHHHH
T ss_pred             eEEeec-CcccceEEEEcCCCCEEEEEEcCCCC---------CCHHHHHHHHHHHHHHHH
Confidence            346677 8888999875     48888875221         123567789999988865

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=95.70  E-value=0.043  Score=54.68  Aligned_cols=35  Identities=31%  Similarity=0.494  Sum_probs=26.6

Q ss_pred             CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceee
Q 013230          290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRI  340 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~  340 (447)
                      ..++|+|+.++|||++.+..               ..+ .+.|+||..|..
T Consensus       220 ~~~~H~D~~~~Nil~~~~~~---------------~~~-~~~~IDwE~a~~  254 (379)
T 3feg_A          220 VVFCHNDIQEGNILLLSEPE---------------NAD-SLMLVDFEYSSY  254 (379)
T ss_dssp             EEEECSCCCGGGEEEESCC------------------C-CEEECCCTTCEE
T ss_pred             cEEEcCCCCCCeEEEcCCCC---------------ccC-cEEEEecccCCc
Confidence            47899999999999987610               000 689999998765

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=91.86  E-value=0.079  Score=51.15  Aligned_cols=38  Identities=29%  Similarity=0.371  Sum_probs=28.7

Q ss_pred             CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCC
Q 013230          290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG  343 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~  343 (447)
                      ..++|+|++++|||++.+...                +-.+.|+||+.+.....
T Consensus       183 ~~lvHgD~~~~Nil~~~~~~~----------------~~~~~lIDf~~a~~G~~  220 (333)
T 3csv_A          183 MVFVHRDFHAQNLLWLPEREG----------------LARVGVIDFQDAKLGHR  220 (333)
T ss_dssp             CEEECSCCSGGGEEECTTSCG----------------GGGEEECCCTTCEEECT
T ss_pred             CeeEeCCcCcccEEeccCcCC----------------CCCeEEEeCCCcCcCCC
Confidence            689999999999999874100                00689999998877544

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=90.23  E-value=0.22  Score=49.75  Aligned_cols=38  Identities=32%  Similarity=0.411  Sum_probs=26.1

Q ss_pred             CeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC
Q 013230          291 EFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT  342 (447)
Q Consensus       291 ~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~  342 (447)
                      .++|.|+.++|||+..+..              ...+-.+.++||-.|....
T Consensus       245 vfcHnDl~~gNil~~~~~~--------------~~~~~~l~vIDwEya~~n~  282 (401)
T 3g15_A          245 VFCHNDCQEGNILLLEGRE--------------NSEKQKLMLIDFEYSSYNY  282 (401)
T ss_dssp             EEECSCCCGGGEEEETTGG--------------GCSSCCEEECCCTTCEEEE
T ss_pred             eeEEecCCCCeEEEecCcc--------------cCcCCeEEEechHhccCCC
Confidence            3679999999999954310              0001169999999887643

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=89.30  E-value=0.21  Score=51.01  Aligned_cols=46  Identities=9%  Similarity=-0.009  Sum_probs=28.6

Q ss_pred             ceEEeccccceEEEEec------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccc
Q 013230          136 NIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNH  190 (447)
Q Consensus       136 ~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h  190 (447)
                      .++.|+.|.-..+|++.      .+++|+.....        ... -...+|..+++.|..
T Consensus       112 ~i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~--------~~~-idR~~E~~vl~~L~~  163 (458)
T 2qg7_A          112 EFQIINGGITNILIKVKDMSKQAKYLIRLYGPKT--------DEI-INREREKKISCILYN  163 (458)
T ss_dssp             EEEEECC--CEEEEEEEETTTTEEEEEEEECC-C--------CSC-SCHHHHHHHHHHHTT
T ss_pred             EEEEcCCCeEeEEEEEEECCCCceEEEEECCCCh--------hhh-cCHHHHHHHHHHHHh
Confidence            46789999999999985      36677653211        111 112589999999876

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=88.86  E-value=0.27  Score=47.75  Aligned_cols=33  Identities=36%  Similarity=0.634  Sum_probs=28.1

Q ss_pred             CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC
Q 013230          290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT  342 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~  342 (447)
                      ..++|+|+.++|||++.++                    .+.|+||+.+....
T Consensus       206 ~~~~HgD~~~~N~l~~~~~--------------------~~~~iD~e~~~~~~  238 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNEE--------------------SIYIIDWDEPMLAP  238 (339)
T ss_dssp             CEEECSCCCGGGEEECGGG--------------------CEEECCCSSCEEEC
T ss_pred             ceeEeCCCCcCCEEEeCCC--------------------eEEEEECCCCeeCC
Confidence            5799999999999998765                    68999998876643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	447
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	2e-06
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	4e-06
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	9e-06
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	2e-05
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	3e-05
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	5e-05
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	7e-05
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	8e-05
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	8e-05
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	1e-04
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	1e-04
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	1e-04
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	3e-04
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	3e-04
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	7e-04
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	0.001
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	0.002
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	0.002
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	0.002
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	0.002
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	0.002
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	0.003
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	0.003
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	0.004
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	0.004

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 48/323 (14%), Positives = 92/323 (28%), Gaps = 92/323 (28%)

Query: 139 KVGEGTFGEAFLAGNTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDT 198
           ++G G+F   +   +T   V     +L+     + + +   EE  +   L H        
Sbjct: 16  EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQH-------- 67

Query: 199 LNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGG 258
                             P       +WE                 +    +V  L   G
Sbjct: 68  ------------------PNIVRFYDSWESTVKG------------KKCIVLVTELMTSG 97

Query: 259 ---KDLESFVLLNINEARSLLVQVTAGLAVAEAA-YEFEHRDLHWGNVLLSRNDSVTMNF 314
                L+ F ++ I   RS   Q+  GL           HRDL   N+ ++         
Sbjct: 98  TLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTG----- 152

Query: 315 LLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLS---QDPELFSGPKGDKQFDTYR 371
                         SV I D  L+ +        +  +     PE++     +       
Sbjct: 153 --------------SVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEEKYDESV----- 193

Query: 372 KMKKVTEDQWE----------GSFP---KTNVLWLVYLVDMLLLKKTFDRSSKDE-RDL- 416
                  D +             +P     N   +   V   +   +FD+ +  E +++ 
Sbjct: 194 -------DVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEII 246

Query: 417 -RSLKKRLDKYNSAKEAIFDPFF 438
              +++  D+  S K+ +   FF
Sbjct: 247 EGCIRQNKDERYSIKDLLNHAFF 269

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 46.2 bits (109), Expect = 4e-06
 Identities = 53/324 (16%), Positives = 94/324 (29%), Gaps = 93/324 (28%)

Query: 139 KVGEGTFGEAFLA-----GNTV-CKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLR 192
           ++G G FG          GN    K V            +   E + +E+     L H  
Sbjct: 33  ELGTGAFGVVHRVTERATGNNFAAKFVMTP--------HESDKETVRKEIQTMSVLRH-- 82

Query: 193 RNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVF 252
                                   P    L  A+ED                +N+  +++
Sbjct: 83  ------------------------PTLVNLHDAFED----------------DNEMVMIY 102

Query: 253 VLQHGGKDLESFVL-----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRN 307
               GG +L   V      ++ +EA   + QV  GL        + H DL   N++ +  
Sbjct: 103 EFMSGG-ELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHEN-NYVHLDLKPENIMFTTK 160

Query: 308 DSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQ----DPELFSGPKG 363
            S                    + +IDF L+     +    +         PE+  G   
Sbjct: 161 RSNE------------------LKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPV 202

Query: 364 DKQFDTYRKMKKVTEDQWEGSFP-----KTNVLWLVYLVDMLLLKKTFDRSSKDERDL-- 416
               D +  +  ++     G  P         L  V   D  +    F   S+D +D   
Sbjct: 203 GYYTDMW-SVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIR 261

Query: 417 RSLKKRLDKYNSAKEAIFDPFFSD 440
           + L    +   +  +A+  P+ + 
Sbjct: 262 KLLLADPNTRMTIHQALEHPWLTP 285

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 45.1 bits (106), Expect = 9e-06
 Identities = 50/336 (14%), Positives = 93/336 (27%), Gaps = 86/336 (25%)

Query: 120 APTKLLDLFSKYSDPENIVKVGEGTFGEAFLAGNTVC-KVVPIDGDLKVNGEAQKKSEEL 178
              K   ++  Y   + + ++G G FG           +V        +N         +
Sbjct: 20  VEVKQGSVYDYY---DILEELGSGAFGVVHRCVEKATGRVFVAK---FINTPYPLDKYTV 73

Query: 179 LEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSEND 238
             E+ +   L+H                          P    L  A+ED          
Sbjct: 74  KNEISIMNQLHH--------------------------PKLINLHDAFED---------- 97

Query: 239 NPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAGLAVAEAAYEFE 293
                 + +  ++     GG +L   +      ++  E  + + Q   GL          
Sbjct: 98  ------KYEMVLILEFLSGG-ELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEH-SIV 149

Query: 294 HRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQ 353
           H D+   N++                         SV IIDF L+     ++I  +  + 
Sbjct: 150 HLDIKPENIMCETKK------------------ASSVKIIDFGLATKLNPDEIVKVTTAT 191

Query: 354 ----DPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFP-----KTNVLWLVYLVDMLLLKK 404
                PE+          D +  +  +      G  P         L  V   D    + 
Sbjct: 192 AEFAAPEIVDREPVGFYTDMWA-IGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDED 250

Query: 405 TFDRSSKDERDL--RSLKKRLDKYNSAKEAIFDPFF 438
            F   S + +D     L+K   K  +  +A+  P+ 
Sbjct: 251 AFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWL 286

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 55/346 (15%), Positives = 102/346 (29%), Gaps = 79/346 (22%)

Query: 129 SKYSDPENIVKVGEGTFGEAFLA-----GNTV-CKVVPIDGDLKVNGEAQKKSEELLEEV 182
           SKY   E + K+G+GTFGE F A     G  V  K V ++       E +      L E+
Sbjct: 10  SKY---EKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMEN------EKEGFPITALREI 60

Query: 183 VLSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKE 242
            +   L H                               LI+         C    +P  
Sbjct: 61  KILQLLKH--------------------------ENVVNLIEI--------CRTKASPYN 86

Query: 243 FPENQRYIVFVLQHGG---KDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHW 299
             +   Y+VF               V   ++E + ++  +  GL       +  HRD+  
Sbjct: 87  RCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHR-NKILHRDMKA 145

Query: 300 GNVLLSRNDSV-------------TMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI 346
            NVL++R+  +               N   +     V T       +           D+
Sbjct: 146 ANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDL 205

Query: 347 FFLDLSQDPELFSGP---KGDKQFDTYRKMKKV----TEDQWEGSFPKTNVLWLVYLVDM 399
           +        E+++     +G+ +      + ++    T + W           L  +   
Sbjct: 206 WGAGCI-MAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQ 264

Query: 400 LLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSD 440
               K   ++   +     L  +L   +      + +A+   FF  
Sbjct: 265 KRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWS 310

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 52/333 (15%), Positives = 96/333 (28%), Gaps = 73/333 (21%)

Query: 135 ENIVKVGEGTFGEAFLA-----GNTV-CKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL 188
           E +  +GEG F   + A        V  K + +      +      +   L E+ L   L
Sbjct: 1   EKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLG---HRSEAKDGINRTALREIKLLQEL 57

Query: 189 NHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQR 248
           +H                          P    L+ A+                  ++  
Sbjct: 58  SH--------------------------PNIIGLLDAFGH----------------KSNI 75

Query: 249 YIVFVLQHGGKDL---ESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLS 305
            +VF       ++   ++ ++L  +  ++ ++    GL      +   HRDL   N+LL 
Sbjct: 76  SLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYL-HQHWILHRDLKPNNLLLD 134

Query: 306 RNDSV---------TMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPE 356
            N  +         +           V T       + F       G D++ +      E
Sbjct: 135 ENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILA-E 193

Query: 357 LFSGP---KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDE 413
           L        GD   D   ++ +      E  +P    L                  S   
Sbjct: 194 LLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAG 253

Query: 414 RDLRSLKKRLDKYN-----SAKEAIFDPFFSDL 441
            DL  L + L  +N     +A +A+   +FS+ 
Sbjct: 254 DDLLDLIQGLFLFNPCARITATQALKMKYFSNR 286

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 5e-05
 Identities = 49/326 (15%), Positives = 93/326 (28%), Gaps = 76/326 (23%)

Query: 139 KVGEGTFGEAFLA-----GNTV-CKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLR 192
           ++G G F           G     K   I      +       E++  EV +   + H  
Sbjct: 17  ELGSGQFAVVKKCREKSTGLQYAAKF--IKKRRTKSSRRGVSREDIEREVSILKEIQH-- 72

Query: 193 RNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVF 252
                                   P    L + +E+                +    ++ 
Sbjct: 73  ------------------------PNVITLHEVYEN----------------KTDVILIL 92

Query: 253 VLQHGGKDLESFV---LLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDS 309
            L  GG+  +       L   EA   L Q+  G+    +     H DL   N++L   + 
Sbjct: 93  ELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQ-IAHFDLKPENIMLLDRNV 151

Query: 310 VTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQFDT 369
                     ++ +  FGL+  I      +   G   F       PE+ +      + D 
Sbjct: 152 -------PKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFV-----APEIVNYEPLGLEADM 199

Query: 370 YR------KMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDL--RSLKK 421
           +        +  ++         K   L  V  V+     + F  +S   +D   R L K
Sbjct: 200 WSIGVITYIL--LSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVK 257

Query: 422 RLDKYNSAKEAIFDPFFSDLIVDRPL 447
              K  + ++++  P+       + L
Sbjct: 258 DPKKRMTIQDSLQHPWIKPKDTQQAL 283

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 7e-05
 Identities = 67/332 (20%), Positives = 107/332 (32%), Gaps = 72/332 (21%)

Query: 135 ENIVKVGEGTFGEAFLA-----GNTV-CKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL 188
           E + K+GEGT+G  F A        V  K V +D D       +      L E+ L   L
Sbjct: 5   EKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDD------DEGVPSSALREICLLKEL 58

Query: 189 NHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQR 248
            H               V + +  V        L+  + D D K   ++ N    PE  +
Sbjct: 59  KHKN------------IVRLHD--VLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVK 104

Query: 249 YIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRND 308
             +F                         Q+  GL     +    HRDL   N+L++RN 
Sbjct: 105 SFLF-------------------------QLLKGLG-FCHSRNVLHRDLKPQNLLINRNG 138

Query: 309 ---------SVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFS 359
                    +      +      V T       + F     +T  D++        EL +
Sbjct: 139 ELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCI-FAELAN 197

Query: 360 G----PKGDKQFDTYRKMKKV----TEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSK 411
                  G+   D  +++ ++    TE+QW       +            L     + + 
Sbjct: 198 AGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNA 257

Query: 412 DERDL--RSLKKRLDKYNSAKEAIFDPFFSDL 441
             RDL    LK    +  SA+EA+  P+FSD 
Sbjct: 258 TGRDLLQNLLKCNPVQRISAEEALQHPYFSDF 289

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 8e-05
 Identities = 55/323 (17%), Positives = 100/323 (30%), Gaps = 57/323 (17%)

Query: 139 KVGEGTFGEAFLAGNTVCKVVPIDGDLKVNGE--AQKKSEELLEEVVLSWTLNHLRRNEG 196
           ++GEG +G        V K      DLK  G   A K+             +      EG
Sbjct: 14  EIGEGAYG-------KVFKAR----DLKNGGRFVALKR-------------VRVQTGEEG 49

Query: 197 DTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQH 256
             L+       +  ++  + P    L                      E +  +VF    
Sbjct: 50  MPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR-----------ETKLTLVFEHVD 98

Query: 257 GGK----DLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTM 312
                  D      +     + ++ Q+  GL    +     HRDL   N+L++ +  + +
Sbjct: 99  QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHR-VVHRDLKPQNILVTSSGQIKL 157

Query: 313 NFLLDGKQMFVRTFGLSVTIIDFTLS-------RINTGEDIFFLDLSQDPELFSGP---K 362
                 +    +    SV +  +  +          T  D++ +      E+F      +
Sbjct: 158 ADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIF-AEMFRRKPLFR 216

Query: 363 GDKQFDTYRKMKKVTEDQWEGSFPKTNVL--WLVYLVDMLLLKKTFDRSSKDERDL--RS 418
           G    D   K+  V     E  +P+   L     +      ++K      +  +DL  + 
Sbjct: 217 GSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKC 276

Query: 419 LKKRLDKYNSAKEAIFDPFFSDL 441
           L     K  SA  A+  P+F DL
Sbjct: 277 LTFNPAKRISAYSALSHPYFQDL 299

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (98), Expect = 8e-05
 Identities = 55/336 (16%), Positives = 96/336 (28%), Gaps = 95/336 (28%)

Query: 129 SKYSDPENIVKVGEGTFGEAFLA-----GNTV-CKVVPIDGDLKVNGEAQKKSEELLEEV 182
           S+  D E +  +G G++G          G  +  K       L      + + + L+ EV
Sbjct: 1   SRAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKE------LDYGSMTEAEKQMLVSEV 54

Query: 183 VLSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKE 242
            L   L H                          P          D  +           
Sbjct: 55  NLLRELKH--------------------------PNIVRYYDRIIDRTNTTL-------- 80

Query: 243 FPENQRYIVFVLQHGGKDLESFV--------LLNINEARSLLVQVTAGLAVA----EAAY 290
                 YIV     GG DL S +         L+      ++ Q+T  L       +  +
Sbjct: 81  ------YIVMEYCEGG-DLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGH 133

Query: 291 EFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLD 350
              HRDL   NV L                        +V + DF L+RI   +  F   
Sbjct: 134 TVLHRDLKPANVFLDGKQ--------------------NVKLGDFGLARILNHDTSFAKA 173

Query: 351 LSQ-----DPELFSGPKGDKQFDTYRKMKKVTEDQWEGS--FPKTNVLWLVYLVDMLLLK 403
                    PE  +    +++ D +  +  +  +       F   +   L   +     +
Sbjct: 174 FVGTPYYMSPEQMNRMSYNEKSDIWS-LGCLLYELCALMPPFTAFSQKELAGKIREGKFR 232

Query: 404 KTFDRSSKDERDL--RSLKKRLDKYNSAKEAIFDPF 437
           +   R S +  ++  R L  +     S +E + +P 
Sbjct: 233 RIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPL 268

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 43/325 (13%), Positives = 86/325 (26%), Gaps = 84/325 (25%)

Query: 139 KVGEGTFGEAFLA----GNTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRN 194
            +G G FG  +       N    +  ++ D   +         +  EVVL   ++     
Sbjct: 11  LLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG 70

Query: 195 EGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVL 254
                                      +I+  + ++               +   ++   
Sbjct: 71  ---------------------------VIRLLDWFER-------------PDSFVLILER 90

Query: 255 QHGGKDLESFV----LLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSV 310
               +DL  F+     L    ARS   QV   +          HRD+   N+L+  N   
Sbjct: 91  PEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNC-GVLHRDIKDENILIDLNRG- 148

Query: 311 TMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQ---DPELFSGPKGDKQF 367
                              + +IDF    +         D ++    PE     +   + 
Sbjct: 149 ------------------ELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRS 190

Query: 368 DTYRKMKKVTEDQWEGSFP---KTNVLWLVYLVDMLLLKKTFDRSSKDERDL--RSLKKR 422
                +  +  D   G  P      ++                R S + + L    L  R
Sbjct: 191 AAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFR--------QRVSSECQHLIRWCLALR 242

Query: 423 LDKYNSAKEAIFDPFFSDLIVDRPL 447
                + +E    P+  D+++ +  
Sbjct: 243 PSDRPTFEEIQNHPWMQDVLLPQET 267

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 51/316 (16%), Positives = 96/316 (30%), Gaps = 84/316 (26%)

Query: 139 KVGEGTFGEAFLA-----GNTV-CKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLR 192
            +G+G FG  +LA        +  KV+      K   E      +L  EV +   L H  
Sbjct: 13  PLGKGKFGNVYLAREKQSKFILALKVLF-----KAQLEKAGVEHQLRREVEIQSHLRH-- 65

Query: 193 RNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVF 252
                             ++         L   + D                  + Y++ 
Sbjct: 66  ---------------PNILR---------LYGYFHD----------------ATRVYLIL 85

Query: 253 VLQHGG---KDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDS 309
                G   ++L+     +     + + ++   L+   +     HRD+   N+LL     
Sbjct: 86  EYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK-RVIHRDIKPENLLLGSAG- 143

Query: 310 VTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQD---PELFSGPKGDKQ 366
                               + I DF  S          L  + D   PE+  G   D++
Sbjct: 144 -------------------ELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEK 184

Query: 367 FDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTF-DRSSKDERDL--RSLKKRL 423
            D +  +  +  +   G  P     +      +  ++ TF D  ++  RDL  R LK   
Sbjct: 185 VDLWS-LGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNP 243

Query: 424 DKYNSAKEAIFDPFFS 439
            +    +E +  P+ +
Sbjct: 244 SQRPMLREVLEHPWIT 259

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 39/250 (15%), Positives = 73/250 (29%), Gaps = 75/250 (30%)

Query: 130 KYSDPENIVKVGEGTFGEAFLAGNT------VCKVVPIDGDLKVNGEAQKKSEELLEEVV 183
           K  D E I ++G G  G  F   +         K++ ++              +++ E+ 
Sbjct: 4   KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIK-------PAIRNQIIRELQ 56

Query: 184 LSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEF 243
           +    N                           PY      A+                 
Sbjct: 57  VLHECNS--------------------------PYIVGFYGAFYS--------------- 75

Query: 244 PENQRYIVFVLQHGG---KDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWG 300
            + +  I      GG   + L+    +       + + V  GL      ++  HRD+   
Sbjct: 76  -DGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPS 134

Query: 301 NVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSG 360
           N+L++    +    L D        FG+S  +ID +++    G   +       PE   G
Sbjct: 135 NILVNSRGEI---KLCD--------FGVSGQLID-SMANSFVGTRSYM-----SPERLQG 177

Query: 361 PKGDKQFDTY 370
                Q D +
Sbjct: 178 THYSVQSDIW 187

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 40.1 bits (93), Expect = 3e-04
 Identities = 58/327 (17%), Positives = 97/327 (29%), Gaps = 90/327 (27%)

Query: 139 KVGEGTFGEAFLA-----GNTV-CKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLR 192
            +G G                   K++ + G    + E  ++  E               
Sbjct: 10  ILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREAT------------- 56

Query: 193 RNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVF 252
             E D L            KV   P    L   +E                     ++VF
Sbjct: 57  LKEVDILR-----------KVSGHPNIIQLKDTYETN----------------TFFFLVF 89

Query: 253 VLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRND 308
            L   G +L  ++     L+  E R ++  +   +          HRDL   N+LL  + 
Sbjct: 90  DLMKKG-ELFDYLTEKVTLSEKETRKIMRALLEVICALHKLN-IVHRDLKPENILLDDDM 147

Query: 309 SVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQFD 368
           ++    L D        FG S  +      R   G   +       PE+      D    
Sbjct: 148 NIK---LTD--------FGFSCQLDPGEKLREVCGTPSY-----LAPEIIECSMNDNHPG 191

Query: 369 TYRKMKKVTEDQW----------EGSFP-----KTNVLWLVYLVDMLLLKKTFDRSSKDE 413
             +++     D W           GS P     +  +L ++   +       +D  S   
Sbjct: 192 YGKEV-----DMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTV 246

Query: 414 RDL--RSLKKRLDKYNSAKEAIFDPFF 438
           +DL  R L  +  K  +A+EA+  PFF
Sbjct: 247 KDLVSRFLVVQPQKRYTAEEALAHPFF 273

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 55/333 (16%), Positives = 113/333 (33%), Gaps = 94/333 (28%)

Query: 133 DPEN----IVKVGEGTFGEAFLAGNTVCKVVPIDGDLKV-NGEAQKKSEELLEEVVLSWT 187
           +PE+    I ++G+G FG+ + A N    V+      KV + +++++ E+ + E+ +  +
Sbjct: 9   NPEDFWEIIGELGDGAFGKVYKAQNKETSVLAA---AKVIDTKSEEELEDYMVEIDILAS 65

Query: 188 LNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQ 247
            +H                          P    L+ A+                  EN 
Sbjct: 66  CDH--------------------------PNIVKLLDAFYY----------------ENN 83

Query: 248 RYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNV 302
            +I+     GG  +++ +L     L  ++ + +  Q    L       +  HRDL  GN+
Sbjct: 84  LWILIEFCAGG-AVDAVMLELERPLTESQIQVVCKQTLDALNYLHDN-KIIHRDLKAGNI 141

Query: 303 LLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPK 362
           L + +  +    L D        FG+S         R +     ++      PE+     
Sbjct: 142 LFTLDGDIK---LAD--------FGVSAKNTRTIQRRDSFIGTPYW----MAPEVVMCET 186

Query: 363 GDKQFDTYRKMKKVTEDQW------------EGSFPKTNVLWLVYLV--DMLLLKKTFDR 408
              +   Y+       D W            E    + N + ++  +            R
Sbjct: 187 SKDRPYDYKA------DVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQPSR 240

Query: 409 SSKDERDL--RSLKKRLDKYNSAKEAIFDPFFS 439
            S + +D   + L+K +D   +  + +  PF +
Sbjct: 241 WSSNFKDFLKKCLEKNVDARWTTSQLLQHPFVT 273

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (90), Expect = 7e-04
 Identities = 49/368 (13%), Positives = 109/368 (29%), Gaps = 71/368 (19%)

Query: 121 PTKLLDLF--SKYSDPENIVKVGEGTFGEAFLAGNTVC-KVVPIDGDLKVNGEAQKKSEE 177
           P    + +  ++Y     + K+G G F   +LA + V    V +    K+    +  +E 
Sbjct: 3   PAFKGEPYKDARY---ILVRKLGWGHFSTVWLAKDMVNNTHVAM----KIVRGDKVYTEA 55

Query: 178 LLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSEN 237
             +E+ L   +N     + D++ A                +   L+  +           
Sbjct: 56  AEDEIKLLQRVNDADNTKEDSMGA---------------NHILKLLDHFNHKGPNGVHVV 100

Query: 238 DNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDL 297
              +   EN   ++   +H G  L           + +  Q+  GL          H D+
Sbjct: 101 MVFEVLGENLLALIKKYEHRGIPLI--------YVKQISKQLLLGLDYMHRRCGIIHTDI 152

Query: 298 HWGNVLLSRND-------------------------SVTMNFLLDGKQMFVRTFGLSVTI 332
              NVL+   D                         S+        + +    +G    I
Sbjct: 153 KPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADI 212

Query: 333 IDF--TLSRINTGEDIF-----FLDLSQDPELFSGPKGDKQFDTYR-KMKKVTEDQWEGS 384
                 +  + TG+ +F           D  +    +   +  +Y  +  K T   +   
Sbjct: 213 WSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSR 272

Query: 385 FPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFS 439
               N+  L +     +L + +  S  + +++      + + +      A   +  P+  
Sbjct: 273 GLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLK 332

Query: 440 DLIVDRPL 447
           D +    +
Sbjct: 333 DTLGMEEI 340

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 29/190 (15%), Positives = 64/190 (33%), Gaps = 52/190 (27%)

Query: 126 DLFSKYSDPENIVKVGEGTFGEAFLAGNTVC-KVVPIDGDLKVNGEAQKKSEELLEEVVL 184
           D   KY       K+G+G  G  + A +    + V I    ++N + Q K E ++ E+++
Sbjct: 17  DPKKKY---TRFEKIGQGASGTVYTAMDVATGQEVAIR---QMNLQQQPKKELIINEILV 70

Query: 185 SWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFP 244
                +                          P     + ++                  
Sbjct: 71  MRENKN--------------------------PNIVNYLDSYLV---------------- 88

Query: 245 ENQRYIVFVLQHGG--KDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNV 302
            ++ ++V     GG   D+ +   ++  +  ++  +    L    +  +  HRD+   N+
Sbjct: 89  GDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSN-QVIHRDIKSDNI 147

Query: 303 LLSRNDSVTM 312
           LL  + SV +
Sbjct: 148 LLGMDGSVKL 157

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 52/335 (15%), Positives = 94/335 (28%), Gaps = 92/335 (27%)

Query: 126 DLFSKYSDPE----NIVKVGEGTFGEAFLA-----GNTV-CKVVPIDGDLKVNGEAQKKS 175
           +LF K  DPE    ++ ++G G+FG  + A        V  K +   G         +K 
Sbjct: 6   ELFFK-DDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQS-----NEKW 59

Query: 176 EELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCS 235
           +++++EV     L H                          P        +         
Sbjct: 60  QDIIKEVRFLQKLRH--------------------------PNTIQYRGCYLR------- 86

Query: 236 ENDNPKEFPENQRYIVFVLQHGG---KDLESFVLLNINEARSLLVQVTAGLAVAEAAYEF 292
                    E+  ++V     G            L   E  ++      GLA   +    
Sbjct: 87  ---------EHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH-NM 136

Query: 293 EHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLS 352
            HRD+  GN+LLS                        V + DF  + I    + F     
Sbjct: 137 IHRDVKAGNILLSEPG--------------------LVKLGDFGSASIMAPANSFVGTPY 176

Query: 353 Q-DPELFSGPKG---DKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR 408
              PE+         D + D +  +     +  E   P  N+  +  L  +   +    +
Sbjct: 177 WMAPEVILAMDEGQYDGKVDVWS-LGITCIELAERKPPLFNMNAMSALYHIAQNESPALQ 235

Query: 409 SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFF 438
           S       R+      +       +++  +   F 
Sbjct: 236 SGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFV 270

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 0.002
 Identities = 63/335 (18%), Positives = 110/335 (32%), Gaps = 78/335 (23%)

Query: 135 ENIVKVGEGTFGEAFLA-----GNTV-CKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL 188
           + + K+GEGT+G  + A     G  V  K       ++++ E +      + E+ L   L
Sbjct: 5   QKVEKIGEGTYGVVYKARNKLTGEVVALKK------IRLDTETEGVPSTAIREISLLKEL 58

Query: 189 NHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQR 248
           NH                          P    +++  +                 EN+ 
Sbjct: 59  NH--------------------------PN---IVKLLDVIHT-------------ENKL 76

Query: 249 YIVFVLQHGGK----DLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLL 304
           Y+VF   H       D  +   + +   +S L Q+  GLA   +     HRDL   N+L+
Sbjct: 77  YLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHR-VLHRDLKPQNLLI 135

Query: 305 SRNDSVTMNFLLDGKQMFVRTFGLSVTI---------IDFTLSRINTGEDIFFLDLSQDP 355
           +   ++ +      +   V     +  +         I       +T  DI+ L      
Sbjct: 136 NTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIF-A 194

Query: 356 ELFSG---PKGDKQFDTYRKMKKV----TEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR 408
           E+ +      GD + D   ++ +      E  W G     +              K    
Sbjct: 195 EMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPP 254

Query: 409 SSKDERDL--RSLKKRLDKYNSAKEAIFDPFFSDL 441
             +D R L  + L    +K  SAK A+  PFF D+
Sbjct: 255 LDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDV 289

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 35/180 (19%), Positives = 63/180 (35%), Gaps = 24/180 (13%)

Query: 139 KVGEGTFGEAFLA------GNTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLR 192
            +G G FG+   A         V   V +   LK   ++ ++   + E  +++   +H  
Sbjct: 44  VLGSGAFGKVMNATAYGISKTGVSIQVAVK-MLKEKADSSEREALMSELKMMTQLGSH-- 100

Query: 193 RNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVF 252
            N           V +     C       LI  +  + D         ++F E++  I +
Sbjct: 101 EN----------IVNLLG--ACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDE--IEY 146

Query: 253 VLQHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTM 312
             Q   ++ E   +L   +      QV  G+   E      HRDL   NVL++    V +
Sbjct: 147 ENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK-SCVHRDLAARNVLVTHGKVVKI 205

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 59/181 (32%)

Query: 139 KVGEGTFGEAFLA-----GNTV-CKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLR 192
            +GEG +GE  LA        V  K+V +         A    E + +E+ ++  LNH  
Sbjct: 12  TLGEGAYGEVQLAVNRVTEEAVAVKIVDMK-------RAVDCPENIKKEICINKMLNH-- 62

Query: 193 RNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVF 252
            N           V+ +  +                                 N +Y+  
Sbjct: 63  EN----------VVKFYGHRRE------------------------------GNIQYLFL 82

Query: 253 VLQHGGKD---LESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDS 309
               GG+    +E  + +   +A+    Q+ AG+          HRD+   N+LL   D+
Sbjct: 83  EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG-ITHRDIKPENLLLDERDN 141

Query: 310 V 310
           +
Sbjct: 142 L 142

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 48/324 (14%), Positives = 98/324 (30%), Gaps = 60/324 (18%)

Query: 135 ENIVKVGEGTFGEAFLAGNTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRN 194
             + K+GEGT+G  + A N   +   +   +++  E +      + E+ +   L H    
Sbjct: 5   HGLEKIGEGTYGVVYKAQNNYGETFALK-KIRLEKEDEGIPSTTIREISILKELKH---- 59

Query: 195 EGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVL 254
                                      L                   E  +     +  +
Sbjct: 60  ----------------------SNIVKLYDVIHTKKRLVLVF-----EHLDQDLKKLLDV 92

Query: 255 QHGGKDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRND------ 308
             GG        L    A+S L+Q+  G+A         HRDL   N+L++R        
Sbjct: 93  CEGG--------LESVTAKSFLLQLLNGIA-YCHDRRVLHRDLKPQNLLINREGELKIAD 143

Query: 309 ---SVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGP---K 362
              +      +      + T       +     + +T  DI+ +      E+ +G     
Sbjct: 144 FGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIF-AEMVNGTPLFP 202

Query: 363 GDKQFDTYRKMKKV----TEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDL-- 416
           G  + D   ++ ++        W              + + L  +       +   DL  
Sbjct: 203 GVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLS 262

Query: 417 RSLKKRLDKYNSAKEAIFDPFFSD 440
           + LK   ++  +AK+A+   +F +
Sbjct: 263 KMLKLDPNQRITAKQALEHAYFKE 286

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 51/327 (15%), Positives = 97/327 (29%), Gaps = 83/327 (25%)

Query: 139 KVGEGTFGEAFLA-----GNTV-CKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLR 192
            +G G F E  LA        V  K +            + K   +  E+ +   + H  
Sbjct: 16  VLGTGAFSEVILAEDKRTQKLVAIKCIAKK-------ALEGKEGSMENEIAVLHKIKH-- 66

Query: 193 RNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVF 252
                                   P   AL   +E                     Y++ 
Sbjct: 67  ------------------------PNIVALDDIYES----------------GGHLYLIM 86

Query: 253 VLQHGGKDLESFVL----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRND 308
            L  GG +L   ++        +A  L+ QV   +          HRDL   N+L    D
Sbjct: 87  QLVSGG-ELFDRIVEKGFYTERDASRLIFQVLDAVKYLH-DLGIVHRDLKPENLLYYSLD 144

Query: 309 SVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQFD 368
                   +  ++ +  FGLS      ++     G   +       PE+ +     K  D
Sbjct: 145 --------EDSKIMISDFGLSKMEDPGSVLSTACGTPGYV-----APEVLAQKPYSKAVD 191

Query: 369 TYRKMKKVTEDQWEGSFP-----KTNVLWLVYLVDMLLLKKTFDRSSKDERDL--RSLKK 421
            +  +  +      G  P        +   +   +       +D  S   +D     ++K
Sbjct: 192 CWS-IGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEK 250

Query: 422 RLDKYNSAKEAIFDPFFS-DLIVDRPL 447
             +K  + ++A+  P+ + D  +D+ +
Sbjct: 251 DPEKRFTCEQALQHPWIAGDTALDKNI 277

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 0.003
 Identities = 32/186 (17%), Positives = 56/186 (30%), Gaps = 61/186 (32%)

Query: 138 VKVGEGTFGEAFLA------GNTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHL 191
           +++G G FG                 +  +    +     +  +EE++ E  +   L++ 
Sbjct: 15  IELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTE-----KADTEEMMREAQIMHQLDN- 68

Query: 192 RRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIV 251
                                    PY   LI   +                      +V
Sbjct: 69  -------------------------PYIVRLIGVCQAE-----------------ALMLV 86

Query: 252 FVLQHGGKDLESFVL-----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSR 306
             +  GG  L  F++     + ++    LL QV+ G+   E    F HRDL   NVLL  
Sbjct: 87  MEMAGGG-PLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK-NFVHRDLAARNVLLVN 144

Query: 307 NDSVTM 312
                +
Sbjct: 145 RHYAKI 150

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 0.004
 Identities = 50/310 (16%), Positives = 92/310 (29%), Gaps = 72/310 (23%)

Query: 133 DPENIV---KVGEGTFGEAFLAGNTVCKVVPIDGD---LKVNGEAQKKSEELLEEVVLSW 186
           DP  +    ++G G FG        V     ++ D   +K   E     E+ +EE  +  
Sbjct: 3   DPSELTFVQEIGSGQFG-------LVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMM 55

Query: 187 TLNHLRRNEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPEN 246
            L+H                          P    L     +                + 
Sbjct: 56  KLSH--------------------------PKLVQLYGVCLE----------------QA 73

Query: 247 QRYIVFVLQHGG----KDLESFVLLNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNV 302
              +VF     G           L        + + V  G+A  E      HRDL   N 
Sbjct: 74  PICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE-EACVIHRDLAARNC 132

Query: 303 LLSRN------DSVTMNFLLDGKQMFVRTFGLSVTIID---FTLSRINTGEDIFFLDLSQ 353
           L+  N      D     F+LD +          V       F+ SR ++  D++   +  
Sbjct: 133 LVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVL- 191

Query: 354 DPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDE 413
             E+FS  K   +  +  ++ +     +    P+     +  +++    ++  DR +   
Sbjct: 192 MWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSR 251

Query: 414 --RDLRSLKK 421
             R L  + +
Sbjct: 252 LLRQLAEIAE 261

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 0.004
 Identities = 42/323 (13%), Positives = 86/323 (26%), Gaps = 87/323 (26%)

Query: 140 VGEGTFGEAFLA-----GNTV-CKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRR 193
           +G G  G+               K++             +   +   EV L         
Sbjct: 20  LGLGINGKVLQIFNKRTQEKFALKML-------------QDCPKARREVEL--------- 57

Query: 194 NEGDTLNACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFV 253
                             +  Q P+   ++  +E+                     IV  
Sbjct: 58  ----------------HWRASQCPHIVRIVDVYENLYAG------------RKCLLIVME 89

Query: 254 LQHGGKDLESFVL------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRN 307
              GG +L S +           EA  ++  +   +    +     HRD+   N+L +  
Sbjct: 90  CLDGG-ELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI-NIAHRDVKPENLLYTSK 147

Query: 308 DSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIFFLDLSQDPELFSGPKGDKQF 367
               +  L D       T   S+T   +T   +              PE+    K DK  
Sbjct: 148 RPNAILKLTDFGFAKETTSHNSLTTPCYTPYYV-------------APEVLGPEKYDKSC 194

Query: 368 DTYRKMKKVTE-DQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDER----DLRSLKKR 422
           D +     +         F   + L +   +   +    ++  + +      +++ L + 
Sbjct: 195 DMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRN 254

Query: 423 LDKYN-----SAKEAIFDPFFSD 440
           L K       +  E +  P+   
Sbjct: 255 LLKTEPTQRMTITEFMNHPWIMQ 277

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	447
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.88
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.15
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	97.71
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.52
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	96.3
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	95.35
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	93.24

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-46  Score=366.05  Aligned_cols=234  Identities=19%  Similarity=0.249  Sum_probs=199.0

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+++++||+|+||+||+|++      ||+|++.....        ...+.+.+|+.+|+.++|        ||    ||+
T Consensus        22 Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~--------~~~~~~~~E~~il~~l~H--------pn----Iv~   81 (293)
T d1yhwa1          22 YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQ--------PKKELIINEILVMRENKN--------PN----IVN   81 (293)
T ss_dssp             BCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGC--------SCHHHHHHHHHHHHHCCC--------TT----BCC
T ss_pred             cEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccC--------hHHHHHHHHHHHHHhCCC--------CC----Eee
Confidence            49999999999999999973      99999875421        234678999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~  284 (447)
                      ++++|..                              ++.+|||||||.|| +|.+++.   +++.+++.++.||+.||+
T Consensus        82 ~~~~~~~------------------------------~~~~~ivmEy~~gg-~L~~~~~~~~l~~~~~~~i~~qi~~aL~  130 (293)
T d1yhwa1          82 YLDSYLV------------------------------GDELWVVMEYLAGG-SLTDVVTETCMDEGQIAAVCRECLQALE  130 (293)
T ss_dssp             EEEEEEE------------------------------TTEEEEEEECCTTC-BHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred             EeEEEEE------------------------------CCEEEEEEEecCCC-cHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence            9999764                              56799999999998 9999876   999999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPELFS  359 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pelf~  359 (447)
                      |||+ +|||||||||+|||++.++                    .+||+|||+|+......     .+....|++||++.
T Consensus       131 yLH~-~~iiHrDiKp~NILl~~~~--------------------~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~aPE~~~  189 (293)
T d1yhwa1         131 FLHS-NQVIHRDIKSDNILLGMDG--------------------SVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVT  189 (293)
T ss_dssp             HHHH-TTEECCCCSGGGEEECTTC--------------------CEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHS
T ss_pred             HHHH-CCCcccCCcHHHeEECCCC--------------------cEeeccchhheeeccccccccccccCCCccChhhhc
Confidence            9999 9999999999999999887                    79999999998764432     23445689999999


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc-cCCCCCccchHHHHHHHHHhcccc-----CHHHHH
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK-KTFDRSSKDERDLRSLKKRLDKYN-----SAKEAI  433 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~-~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL  433 (447)
                      +..++...|||+ +|++.+++++|..||.+......+..+.... ..++.+..+++++++||++||+.|     ||+|+|
T Consensus       190 ~~~~~~~~DiwS-lGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil  268 (293)
T d1yhwa1         190 RKAYGPKVDIWS-LGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELL  268 (293)
T ss_dssp             SSCBCTHHHHHH-HHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSSGGGSCHHHHHHHHHHTCSSTTTSCCHHHHT
T ss_pred             CCCCCchhceeh-HhHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCCCcccCCHHHHHHHHHHccCChhHCcCHHHHh
Confidence            987888889999 9999999999999997654444444444322 234456778999999999999999     999999


Q ss_pred             cCCCCCC
Q 013230          434 FDPFFSD  440 (447)
Q Consensus       434 ~HPff~~  440 (447)
                      +||||+.
T Consensus       269 ~Hp~~~~  275 (293)
T d1yhwa1         269 QHQFLKI  275 (293)
T ss_dssp             TCGGGGG
T ss_pred             cCHhhCC
Confidence            9999974

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-47  Score=363.69  Aligned_cols=236  Identities=19%  Similarity=0.221  Sum_probs=200.6

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||+||+|++      ||+|++.....     ......+.+.+|+.+++.++|        ||    ||
T Consensus         7 dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~-----~~~~~~~~~~~E~~il~~l~h--------pn----Iv   69 (263)
T d2j4za1           7 DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQL-----EKAGVEHQLRREVEIQSHLRH--------PN----IL   69 (263)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHH-----HHTTCHHHHHHHHHHHHTCCC--------TT----BC
T ss_pred             HeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHc-----cChHHHHHHHHHHHHHHhcCC--------CC----CC
Confidence            359999999999999999974      99999875421     223345678999999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              ++.+|||||||.|| +|.+++.    +++..++.++.||+.|
T Consensus        70 ~~~~~~~~------------------------------~~~~~ivmEy~~~g-~L~~~l~~~~~l~e~~~~~i~~qi~~a  118 (263)
T d2j4za1          70 RLYGYFHD------------------------------ATRVYLILEYAPLG-TVYRELQKLSKFDEQRTATYITELANA  118 (263)
T ss_dssp             CEEEEEEC------------------------------SSEEEEEEECCTTC-BHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             eEEEEEEE------------------------------CCEEEEEEeecCCC-cHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence            99999643                              56799999999998 9998876    9999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE---EEEecCCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI---FFLDLSQDPELFS  359 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~---i~~~~~~~pelf~  359 (447)
                      |+|||+ +|||||||||+|||++.++                    .+||+|||+|+.......   .....|++||++.
T Consensus       119 l~~lH~-~~ivHrDiKp~Nill~~~~--------------------~~kl~DFG~a~~~~~~~~~~~~Gt~~Y~APE~~~  177 (263)
T d2j4za1         119 LSYCHS-KRVIHRDIKPENLLLGSAG--------------------ELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIE  177 (263)
T ss_dssp             HHHHHH-TTCCCCCCCGGGEEECTTS--------------------CEEECCCCSCSCCCCCCCEETTEEGGGCCHHHHT
T ss_pred             HHHHHH-CCeeeeeeccccceecCCC--------------------CEeecccceeeecCCCcccccCCCCcccCHHHHc
Confidence            999999 9999999999999999987                    799999999987655422   3455699999999


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      +..++...|||+ +|++.+++++|..||...........+.  +..++.+..+++++++||.+||++|     ||+|+|+
T Consensus       178 ~~~~~~~~DiwS-lGvilyell~G~~Pf~~~~~~~~~~~i~--~~~~~~p~~~s~~~~~li~~~L~~dp~~R~t~~eil~  254 (263)
T d2j4za1         178 GRMHDEKVDLWS-LGVLCYEFLVGKPPFEANTYQETYKRIS--RVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE  254 (263)
T ss_dssp             TCCCCTTHHHHH-HHHHHHHHHHSSCTTCCSSHHHHHHHHH--TTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CCCCCchhhhhh-HhHHHHHHhcCCCCCCCCCHHHHHHHHH--cCCCCCCccCCHHHHHHHHHHccCCHhHCcCHHHHHc
Confidence            988888889999 9999999999999997665555555444  3344455678999999999999999     9999999


Q ss_pred             CCCCCC
Q 013230          435 DPFFSD  440 (447)
Q Consensus       435 HPff~~  440 (447)
                      ||||+.
T Consensus       255 hp~~~~  260 (263)
T d2j4za1         255 HPWITA  260 (263)
T ss_dssp             CHHHHH
T ss_pred             CcCcCC
Confidence            999963

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-46  Score=362.50  Aligned_cols=238  Identities=21%  Similarity=0.260  Sum_probs=191.7

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+++++||+|+||+||+|++      ||+|++.....       ....+.+.+|+.+|++|+|        ||    ||
T Consensus         6 dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~-------~~~~~~~~~Ei~~l~~l~H--------pn----Iv   66 (271)
T d1nvra_           6 DWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA-------VDCPENIKKEICINKMLNH--------EN----VV   66 (271)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC--------------CHHHHHHHHHTCCC--------TT----BC
T ss_pred             ceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhc-------chHHHHHHHHHHHHHhCCC--------CC----Ee
Confidence            359999999999999999973      99999976532       1223567899999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              ++.+|||||||.|| +|.+++.    +++.+++.++.||+.|
T Consensus        67 ~~~~~~~~------------------------------~~~~~ivmEy~~gg-~L~~~l~~~~~l~e~~~~~i~~qi~~a  115 (271)
T d1nvra_          67 KFYGHRRE------------------------------GNIQYLFLEYCSGG-ELFDRIEPDIGMPEPDAQRFFHQLMAG  115 (271)
T ss_dssp             CEEEEEEE------------------------------TTEEEEEEECCTTE-EGGGGSBTTTBCCHHHHHHHHHHHHHH
T ss_pred             eEeeeecc------------------------------CceeEEEEeccCCC-cHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            99999654                              56799999999988 9999986    9999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-------CEEEEecCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-------DIFFLDLSQDP  355 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-------g~i~~~~~~~p  355 (447)
                      |+|||+ +||+||||||+|||++.++                    .+||+|||+|+.....       ..+....|++|
T Consensus       116 l~ylH~-~~IiHrDiKp~NILl~~~~--------------------~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~AP  174 (271)
T d1nvra_         116 VVYLHG-IGITHRDIKPENLLLDERD--------------------NLKISDFGLATVFRYNNRERLLNKMCGTLPYVAP  174 (271)
T ss_dssp             HHHHHH-TTEECSCCCGGGEEECTTC--------------------CEEECCCTTCEECEETTEECCBCCCCSCGGGSCT
T ss_pred             HHHHHH-cCCccCcccHHHEEECCCC--------------------CEEEccchhheeeccCCccccccceeeCcCccCH
Confidence            999999 9999999999999999987                    7999999999875322       22344569999


Q ss_pred             CCCCCCCCCc-hHHHHHhhccCCcccccCCCCCChhHHH-HHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C
Q 013230          356 ELFSGPKGDK-QFDTYRKMKKVTEDQWEGSFPKTNVLWL-VYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S  428 (447)
Q Consensus       356 elf~g~~~~~-~~di~s~lg~~~~~~~~~~~p~~~~~~~-~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s  428 (447)
                      |++.+..... ..|||+ +|++.+++++|..|+...... .............+....+++++++||++||+.|     |
T Consensus       175 E~~~~~~~~~~~~DiwS-lGvilyeml~G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t  253 (271)
T d1nvra_         175 ELLKRREFHAEPVDVWS-CGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARIT  253 (271)
T ss_dssp             HHHHCSSBCHHHHHHHH-HHHHHHHHHHSSCSCSSSSTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCC
T ss_pred             hHhcCCCCCCCceeeeH-hHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHcCCChhHCcC
Confidence            9998876654 469999 999999999999998543211 1112222112233334678999999999999999     9


Q ss_pred             HHHHHcCCCCCCCC
Q 013230          429 AKEAIFDPFFSDLI  442 (447)
Q Consensus       429 a~elL~HPff~~~~  442 (447)
                      |+|+|+||||++..
T Consensus       254 ~~eil~hpwf~~~l  267 (271)
T d1nvra_         254 IPDIKKDRWYNKPL  267 (271)
T ss_dssp             HHHHTTCTTTTCCC
T ss_pred             HHHHhcCHhhCcCC
Confidence            99999999998643

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-45  Score=366.17  Aligned_cols=238  Identities=18%  Similarity=0.207  Sum_probs=202.8

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|++      ||+|++.+...     ......+.+.+|+.+|+.++|        ||    ||
T Consensus         6 dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~-----~~~~~~~~~~~E~~il~~l~h--------p~----Iv   68 (337)
T d1o6la_           6 DFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVI-----IAKDEVAHTVTESRVLQNTRH--------PF----LT   68 (337)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHH-----HHTTCHHHHHHHHHHHHSCCC--------TT----BC
T ss_pred             hcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhc-----cCHHHHHHHHHHHHHHHhCCC--------CC----EE
Confidence            459999999999999999984      99999985422     122345778999999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      +++++|..                              ++.+|+|||||.|| +|.+++.    +++..++.++.||+.|
T Consensus        69 ~l~~~~~~------------------------------~~~~~iv~ey~~gg-~L~~~~~~~~~~~e~~~~~~~~qil~a  117 (337)
T d1o6la_          69 ALKYAFQT------------------------------HDRLCFVMEYANGG-ELFFHLSRERVFTEERARFYGAEIVSA  117 (337)
T ss_dssp             CEEEEEEC------------------------------SSEEEEEEECCTTC-BHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             EEEeeecc------------------------------ccccccceeccCCC-chhhhhhcccCCcHHHHHHHHHHHhhh
Confidence            99999643                              67799999999998 9998887    9999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pel  357 (447)
                      |+|||+ +|||||||||+|||++.++                    .+||+|||+|+.....     ..+....|++||+
T Consensus       118 l~ylH~-~~iiHRDlKP~NILl~~~g--------------------~vkl~DFG~a~~~~~~~~~~~~~~GT~~Y~aPE~  176 (337)
T d1o6la_         118 LEYLHS-RDVVYRDIKLENLMLDKDG--------------------HIKITDFGLCKEGISDGATMKTFCGTPEYLAPEV  176 (337)
T ss_dssp             HHHHHH-TTCBCCCCCGGGEEECTTS--------------------CEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGG
T ss_pred             hhhhhh-cCccccccCHHHeEecCCC--------------------CEEEeecccccccccCCcccccceeCHHHhhhhh
Confidence            999999 9999999999999999988                    7999999999875443     2345667999999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----------
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----------  427 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----------  427 (447)
                      +.+..++..+|+|+ +|++.+++..|..|+...........+..  ..++.+..+|++++|||++||++|          
T Consensus       177 ~~~~~y~~~~DiwS-lGvilyeml~G~~pf~~~~~~~~~~~i~~--~~~~~p~~~s~~~~dli~~~L~~dP~~R~~~~~~  253 (337)
T d1o6la_         177 LEDNDYGRAVDWWG-LGVVMYEMMCGRLPFYNQDHERLFELILM--EEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPS  253 (337)
T ss_dssp             GSSSCBCTTHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHH--CCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTT
T ss_pred             ccCCCCChhhcccc-hhhHHHHHHHCCCCCCCcCHHHHHHHHhc--CCCCCCccCCHHHHHHHHhhccCCchhhcccccc
Confidence            99988888889999 99999999999999977655555555543  334455779999999999999999          


Q ss_pred             CHHHHHcCCCCCCCC
Q 013230          428 SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 sa~elL~HPff~~~~  442 (447)
                      +|+|+++||||+++.
T Consensus       254 ~~~eil~Hp~f~~i~  268 (337)
T d1o6la_         254 DAKEVMEHRFFLSIN  268 (337)
T ss_dssp             THHHHHTSGGGTTCC
T ss_pred             cHHHHHcCcccccCC
Confidence            489999999998763

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-46  Score=362.69  Aligned_cols=240  Identities=19%  Similarity=0.218  Sum_probs=200.4

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||+||+|++      ||+|++.....     ......+.+.+|+.+|++|+|        ||    ||
T Consensus         9 dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~-----~~~~~~~~~~~E~~il~~l~H--------pn----Iv   71 (288)
T d1uu3a_           9 DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHI-----IKENKVPYVTRERDVMSRLDH--------PF----FV   71 (288)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHH-----HHTTCHHHHHHHHHHHHHCCS--------TT----BC
T ss_pred             CCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHc-----cCHHHHHHHHHHHHHHHHcCC--------CC----ee
Confidence            459999999999999999973      99999875421     223345778999999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      +++++|..                              ++.+|||||||.|| +|.+++.    +++..++.++.||+.|
T Consensus        72 ~l~~~~~~------------------------------~~~~~ivmEy~~gg-~L~~~~~~~~~l~e~~~~~~~~qi~~a  120 (288)
T d1uu3a_          72 KLYFTFQD------------------------------DEKLYFGLSYAKNG-ELLKYIRKIGSFDETCTRFYTAEIVSA  120 (288)
T ss_dssp             CEEEEEEC------------------------------SSEEEEEECCCTTE-EHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             EEEEEEEE------------------------------CCEEEEEEEccCCC-CHHHhhhccCCCCHHHHHHHHHHHHHH
Confidence            99999643                              57799999999988 9998876    9999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-------EEEEecCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-------IFFLDLSQDP  355 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-------~i~~~~~~~p  355 (447)
                      |+|||+ +|||||||||+|||++.++                    .+||+|||+|+.....+       .+....|++|
T Consensus       121 l~ylH~-~~iiHrDiKp~NIll~~~~--------------------~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~AP  179 (288)
T d1uu3a_         121 LEYLHG-KGIIHRDLKPENILLNEDM--------------------HIQITDFGTAKVLSPESKQARANSFVGTAQYVSP  179 (288)
T ss_dssp             HHHHHH-TTEECSCCSGGGEEECTTS--------------------CEEECCCTTCEECC----------CCCCGGGCCH
T ss_pred             HHhhcc-ccEEcCcCCccccccCCCc--------------------eEEecccccceecccCCcccccccccCCccccCc
Confidence            999999 9999999999999999987                    79999999998764321       1234569999


Q ss_pred             CCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      |++.+..++.+.|||+ +|++.+++.+|..||...........+..  ..+..+..++++++|||++||+.|     ||+
T Consensus       180 E~~~~~~~~~~~DiwS-lGvilyell~g~~Pf~~~~~~~~~~~i~~--~~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~  256 (288)
T d1uu3a_         180 ELLTEKSACKSSDLWA-LGCIIYQLVAGLPPFRAGNEYLIFQKIIK--LEYDFPEKFFPKARDLVEKLLVLDATKRLGCE  256 (288)
T ss_dssp             HHHHTCCCCHHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHT--TCCCCCTTCCHHHHHHHHTTSCSSGGGSTTSG
T ss_pred             eeeccCCCCcccceeh-hhHHHHHHhhCCCCCCCcCHHHHHHHHHc--CCCCCCccCCHHHHHHHHHHccCCHhHCcCHH
Confidence            9999988888889999 99999999999999976544444555553  334445679999999999999999     777


Q ss_pred             H------HHcCCCCCCCCCC
Q 013230          431 E------AIFDPFFSDLIVD  444 (447)
Q Consensus       431 e------lL~HPff~~~~~~  444 (447)
                      |      +++||||+++..+
T Consensus       257 e~~~~~~i~~Hpff~~i~w~  276 (288)
T d1uu3a_         257 EMEGYGPLKAHPFFESVTWE  276 (288)
T ss_dssp             GGTCHHHHHTSGGGTTCCCT
T ss_pred             HHcCCHHHHcCCccCCCCHH
Confidence            6      6899999987543

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-45  Score=355.25  Aligned_cols=249  Identities=18%  Similarity=0.209  Sum_probs=200.9

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||+||+|++      ||+|++......  ........+.+.+|+.+|++|+|        ||    ||+
T Consensus        12 Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~--~~~~~~~~~~~~~E~~il~~l~H--------pn----Iv~   77 (293)
T d1jksa_          12 YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTK--SSRRGVSREDIEREVSILKEIQH--------PN----VIT   77 (293)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSST--TCSSSBCHHHHHHHHHHHHHCCC--------TT----BCC
T ss_pred             EEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcc--hhhhhHHHHHHHHHHHHHHhCCC--------CC----CCc
Confidence            49999999999999999973      999999865331  11222345788999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      ++++|..                              ++.+|||||||.|| +|.+++.    +++..++.++.||+.||
T Consensus        78 ~~~~~~~------------------------------~~~~~iv~E~~~gg-~L~~~i~~~~~l~~~~~~~~~~qi~~al  126 (293)
T d1jksa_          78 LHEVYEN------------------------------KTDVILILELVAGG-ELFDFLAEKESLTEEEATEFLKQILNGV  126 (293)
T ss_dssp             EEEEEEC------------------------------SSEEEEEEECCCSC-BHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             EEEEEEE------------------------------CCEEEEEEEcCCCc-cccchhccccccchhHHHHHHHHHHHHH
Confidence            9999643                              67799999999998 9999886    99999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDPELFS  359 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~pelf~  359 (447)
                      +|||+ +||+||||||+|||++.++.                ....+||+|||+|+.....    .......|++||++.
T Consensus       127 ~yLH~-~~ivHrDiKp~Nill~~~~~----------------~~~~vkl~DfG~a~~~~~~~~~~~~~~t~~y~APE~~~  189 (293)
T d1jksa_         127 YYLHS-LQIAHFDLKPENIMLLDRNV----------------PKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVN  189 (293)
T ss_dssp             HHHHH-TTEECCCCSGGGEEESCSSS----------------SSCCEEECCCTTCEECTTSCBCSCCCCCGGGCCHHHHT
T ss_pred             Hhhhh-cceeecccccceEEEecCCC----------------cccceEecchhhhhhcCCCccccccCCCCcccCHHHHc
Confidence            99999 99999999999999988762                1125999999999876543    223345699999999


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc-----CHHHH
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN-----SAKEA  432 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d-----sa~el  432 (447)
                      +..++.+.|||+ +|++.+++++|..||........+..+......++.  +..+|++++|||++||..|     ||+|+
T Consensus       190 ~~~~~~~~DiwS-lGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~ei  268 (293)
T d1jksa_         190 YEPLGLEADMWS-IGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDS  268 (293)
T ss_dssp             TCCBCTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHH
T ss_pred             CCCCCCcccchh-hhHHHHHHHcCCCCCCCCCHHHHHHHHHhcCCCCCchhcCCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence            988888889999 999999999999999765555555555433333332  2457899999999999999     99999


Q ss_pred             HcCCCCCCCCCCC
Q 013230          433 IFDPFFSDLIVDR  445 (447)
Q Consensus       433 L~HPff~~~~~~~  445 (447)
                      |+||||++....+
T Consensus       269 l~hp~~~~~~~~~  281 (293)
T d1jksa_         269 LQHPWIKPKDTQQ  281 (293)
T ss_dssp             HHSTTTCC-----
T ss_pred             hcCcccCCCChhH
Confidence            9999999765543

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.1e-45  Score=360.65  Aligned_cols=238  Identities=18%  Similarity=0.214  Sum_probs=197.6

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+.+++||+|+||+||+|++      ||||++.....     ......+.+.+|+.+|++|+|        ||    ||+
T Consensus        17 y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~-----~~~~~~~~~~~Ei~il~~l~H--------pn----Iv~   79 (309)
T d1u5ra_          17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGK-----QSNEKWQDIIKEVRFLQKLRH--------PN----TIQ   79 (309)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSS-----CHHHHHHHHHHHHHHHTTCCC--------TT----BCC
T ss_pred             cEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhc-----cCHHHHHHHHHHHHHHHHCCC--------CC----Eee
Confidence            48999999999999999973      99999986532     233345678999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++..                              ++.+|||||||.|| +|..++.    +++.+++.++.||+.||
T Consensus        80 ~~~~~~~------------------------------~~~~~iv~E~~~~g-~l~~~~~~~~~l~e~~~~~i~~qi~~aL  128 (309)
T d1u5ra_          80 YRGCYLR------------------------------EHTAWLVMEYCLGS-ASDLLEVHKKPLQEVEIAAVTHGALQGL  128 (309)
T ss_dssp             EEEEEEE------------------------------TTEEEEEEECCSEE-HHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred             EEEEEEE------------------------------CCEEEEEEEecCCC-chHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence            9999654                              56799999999988 7776554    99999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-EEEEecCCCCCCCCCC-
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-IFFLDLSQDPELFSGP-  361 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-~i~~~~~~~pelf~g~-  361 (447)
                      .|||+ +|||||||||+|||++.++                    .+||+|||+|+...... ......|++||++.+. 
T Consensus       129 ~yLH~-~~iiHrDiKp~NILl~~~~--------------------~~Kl~DFG~a~~~~~~~~~~GT~~Y~APE~~~~~~  187 (309)
T d1u5ra_         129 AYLHS-HNMIHRDVKAGNILLSEPG--------------------LVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMD  187 (309)
T ss_dssp             HHHHH-TTCBCCCCSGGGEEEETTT--------------------EEEECCCTTCBSSSSBCCCCSCGGGCCHHHHTTTT
T ss_pred             HHHHh-CCEeccCCCcceEEECCCC--------------------CEEEeecccccccCCCCccccCccccCHHHHhccC
Confidence            99999 9999999999999999987                    89999999998765432 2334569999998653 


Q ss_pred             --CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          362 --KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       362 --~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                        .++.++|||+ +|++.++++.|..|+.+......+..+.........+..+++++++||++||++|     ||+|+|+
T Consensus       188 ~~~y~~~~DiwS-lGvilyel~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~  266 (309)
T d1u5ra_         188 EGQYDGKVDVWS-LGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLK  266 (309)
T ss_dssp             SCCBCTHHHHHH-HHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             CCCcCchhhhhh-HHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHCcCChhHCcCHHHHHh
Confidence              3456779999 9999999999999997765555555555433333345668999999999999999     9999999


Q ss_pred             CCCCCCC
Q 013230          435 DPFFSDL  441 (447)
Q Consensus       435 HPff~~~  441 (447)
                      ||||+..
T Consensus       267 Hp~~~~~  273 (309)
T d1u5ra_         267 HRFVLRE  273 (309)
T ss_dssp             CHHHHSC
T ss_pred             CHHhcCC
Confidence            9999754

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=1.4e-44  Score=360.94  Aligned_cols=242  Identities=17%  Similarity=0.199  Sum_probs=200.2

Q ss_pred             hhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCC
Q 013230          127 LFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLN  200 (447)
Q Consensus       127 ~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n  200 (447)
                      ++++|   +++++||+|+||.||+|++      ||+|++.....        .....+.+|+.+|++|+|        ||
T Consensus        27 ~~d~Y---~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~--------~~~~~~~~Ei~il~~l~H--------pn   87 (352)
T d1koba_          27 VYDYY---DILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYP--------LDKYTVKNEISIMNQLHH--------PK   87 (352)
T ss_dssp             GGGTE---EEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSH--------HHHHHHHHHHHHHTTCCS--------TT
T ss_pred             cccce---EEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcch--------hHHHHHHHHHHHHHhCCC--------CC
Confidence            44555   9999999999999999984      99999875421        123567899999999998        88


Q ss_pred             cccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHH
Q 013230          201 ACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSL  275 (447)
Q Consensus       201 ~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i  275 (447)
                          ||+++++|..                              ++.+|||||||.|| +|.+++.     +++.+++.+
T Consensus        88 ----Iv~~~~~~~~------------------------------~~~~~ivmE~~~gg-~L~~~~~~~~~~l~e~~~~~i  132 (352)
T d1koba_          88 ----LINLHDAFED------------------------------KYEMVLILEFLSGG-ELFDRIAAEDYKMSEAEVINY  132 (352)
T ss_dssp             ----BCCEEEEEEC------------------------------SSEEEEEEECCCCC-BHHHHTTCTTCCBCHHHHHHH
T ss_pred             ----CCcEEEEEEE------------------------------CCEEEEEEEcCCCC-hHHHHHHhcCCCCCHHHHHHH
Confidence                9999999653                              57799999999988 9988764     899999999


Q ss_pred             HHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE----EEEec
Q 013230          276 LVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI----FFLDL  351 (447)
Q Consensus       276 ~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~----i~~~~  351 (447)
                      +.||+.||+|||+ +|||||||||+||||+....                  ..+||+|||+|+.......    .....
T Consensus       133 ~~qi~~aL~ylH~-~~iiHRDiKp~NILl~~~~~------------------~~vkL~DFGla~~~~~~~~~~~~~gt~~  193 (352)
T d1koba_         133 MRQACEGLKHMHE-HSIVHLDIKPENIMCETKKA------------------SSVKIIDFGLATKLNPDEIVKVTTATAE  193 (352)
T ss_dssp             HHHHHHHHHHHHH-TTEECCCCCGGGEEESSTTC------------------CCEEECCCTTCEECCTTSCEEEECSSGG
T ss_pred             HHHHHHHHHHHHH-CCeeecccccccccccccCC------------------CeEEEeecccceecCCCCceeeccCccc
Confidence            9999999999999 99999999999999985321                  1799999999998765532    22344


Q ss_pred             CCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc--
Q 013230          352 SQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       352 ~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d--  427 (447)
                      |++||++.+..++.+.|||+ +|++.+++++|..||........+..+......++.  ...++++++|||++||++|  
T Consensus       194 y~aPE~~~~~~~~~~~DiwS-lGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~  272 (352)
T d1koba_         194 FAAPEIVDREPVGFYTDMWA-IGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPR  272 (352)
T ss_dssp             GCCHHHHTTCCBCHHHHHHH-HHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGG
T ss_pred             ccCHHHHcCCCCCCccchHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChh
Confidence            89999999988888889999 999999999999999876555555555543333332  3568999999999999999  


Q ss_pred             ---CHHHHHcCCCCCCCC
Q 013230          428 ---SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 ---sa~elL~HPff~~~~  442 (447)
                         ||+|+|+||||+...
T Consensus       273 ~R~s~~eil~Hp~~~~~~  290 (352)
T d1koba_         273 KRLTVHDALEHPWLKGDH  290 (352)
T ss_dssp             GSCCHHHHHTSTTTSSCC
T ss_pred             HCcCHHHHhcCHhhCCCc
Confidence               999999999998643

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-45  Score=356.95  Aligned_cols=234  Identities=21%  Similarity=0.306  Sum_probs=194.2

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+++++||+|+||+||+|++      ||+|++.....        ...+.+.+|+.+|++|+|        ||    ||+
T Consensus        14 Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~--------~~~~~~~~E~~il~~l~H--------pn----Iv~   73 (288)
T d2jfla1          14 WEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSE--------EELEDYMVEIDILASCDH--------PN----IVK   73 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSS--------GGGGGTHHHHHHHHHCCC--------TT----BCC
T ss_pred             eEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCH--------HHHHHHHHHHHHHHhCCC--------CC----CCe
Confidence            59999999999999999984      99999875421        234567899999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++..                              ++.+|||||||.|| +|.+++.     +++.+++.++.||+.|
T Consensus        74 l~~~~~~------------------------------~~~~~lvmEy~~~g-~L~~~~~~~~~~l~e~~~~~i~~qi~~g  122 (288)
T d2jfla1          74 LLDAFYY------------------------------ENNLWILIEFCAGG-AVDAVMLELERPLTESQIQVVCKQTLDA  122 (288)
T ss_dssp             EEEEEEE------------------------------TTEEEEEEECCTTE-EHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             EEEEEee------------------------------CCeEEEEEecCCCC-cHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            9999654                              56799999999998 9998864     8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pel  357 (447)
                      |+|||+ +||+||||||+|||++.++                    .+||+|||+|+.....     .......|++||+
T Consensus       123 L~ylH~-~~ivHrDiKp~NIll~~~~--------------------~~Kl~DFG~a~~~~~~~~~~~~~~Gt~~y~APE~  181 (288)
T d2jfla1         123 LNYLHD-NKIIHRDLKAGNILFTLDG--------------------DIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEV  181 (288)
T ss_dssp             HHHHHH-TTEECCCCSGGGEEECTTS--------------------CEEECCCTTCEECHHHHHHHTCCCSCCTTCCHHH
T ss_pred             HHHHHH-CCEEEeecChhheeECCCC--------------------CEEEEechhhhccCCCcccccccccccccCCHHH
Confidence            999999 9999999999999999987                    7999999999764322     2334556899999


Q ss_pred             CCC-----CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhc-cCCCCCccchHHHHHHHHHhcccc----
Q 013230          358 FSG-----PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLK-KTFDRSSKDERDLRSLKKRLDKYN----  427 (447)
Q Consensus       358 f~g-----~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~-~~~~~~~~~s~~l~dLl~~mL~~d----  427 (447)
                      +.+     ..++.+.|||+ +|++.+++++|..||........+..+.... ..++.+..++++++|||++||+.|    
T Consensus       182 l~~~~~~~~~y~~k~DiwS-lGvilyemltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R  260 (288)
T d2jfla1         182 VMCETSKDRPYDYKADVWS-LGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDAR  260 (288)
T ss_dssp             HTTCSTTTSSTTTHHHHHH-HHHHHHHHHHSSCTTTTSCGGGHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCSSTTTS
T ss_pred             HhhcccCCCCCChhhhHHH-HHHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHccCChhHC
Confidence            843     33456779999 9999999999999997654444444444322 234445678999999999999999    


Q ss_pred             -CHHHHHcCCCCCC
Q 013230          428 -SAKEAIFDPFFSD  440 (447)
Q Consensus       428 -sa~elL~HPff~~  440 (447)
                       ||+|+|+||||+.
T Consensus       261 ~t~~ell~hp~~~~  274 (288)
T d2jfla1         261 WTTSQLLQHPFVTV  274 (288)
T ss_dssp             CCHHHHTTSGGGCC
T ss_pred             cCHHHHhcCcccCC
Confidence             9999999999984

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-45  Score=362.12  Aligned_cols=238  Identities=19%  Similarity=0.225  Sum_probs=202.1

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+++++||+|+||+||+|++      ||+|++.....     ......+.+.+|+.+|+.++|        ||    ||
T Consensus         5 dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~-----~~~~~~~~~~~E~~il~~l~H--------pn----Iv   67 (316)
T d1fota_           5 DFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIV-----VRLKQVEHTNDERLMLSIVTH--------PF----II   67 (316)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHH-----HHTTCHHHHHHHHHHHHSCCB--------TT----BC
T ss_pred             HeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHc-----cCHHHHHHHHHHHHHHHhccC--------cC----hh
Confidence            459999999999999999973      99999875421     223345778999999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              ++.+|+|||||.|| +|..++.    +++..++.++.||+.|
T Consensus        68 ~~~~~~~~------------------------------~~~~~ivmE~~~gg-~l~~~~~~~~~~~~~~~~~~~~qi~~a  116 (316)
T d1fota_          68 RMWGTFQD------------------------------AQQIFMIMDYIEGG-ELFSLLRKSQRFPNPVAKFYAAEVCLA  116 (316)
T ss_dssp             CEEEEEEC------------------------------SSEEEEEECCCCSC-BHHHHHHHTSSCCHHHHHHHHHHHHHH
T ss_pred             heeeeEee------------------------------CCeeeeEeeecCCc-cccccccccccccccHHHHHHHHHHHh
Confidence            99999643                              67799999999988 8888876    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC--EEEEecCCCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED--IFFLDLSQDPELFSG  360 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g--~i~~~~~~~pelf~g  360 (447)
                      |+|||+ +|||||||||+||||+.++                    .+||+|||+|+......  ......|++||++.+
T Consensus       117 l~~lH~-~~iiHrDiKp~NILl~~~g--------------------~vkL~DFG~a~~~~~~~~~~~Gt~~Y~APE~l~~  175 (316)
T d1fota_         117 LEYLHS-KDIIYRDLKPENILLDKNG--------------------HIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVST  175 (316)
T ss_dssp             HHHHHT-TTEECCCCCGGGEEECTTS--------------------CEEECCCSSCEECSSCBCCCCSCTTTCCHHHHTT
T ss_pred             hhhhcc-CcEEccccCchheeEcCCC--------------------CEEEecCccceEeccccccccCcccccCHHHHcC
Confidence            999999 9999999999999999987                    79999999999865442  223445999999999


Q ss_pred             CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----------CHH
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----------SAK  430 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----------sa~  430 (447)
                      ..++.+.|||+ +|++.+++.+|..||...........++..  ..+.+..+++++++||++||++|          ||+
T Consensus       176 ~~y~~~~DiwS-lGvilyemltG~~Pf~~~~~~~~~~~i~~~--~~~~p~~~s~~~~~li~~~L~~dp~~R~~~~r~t~~  252 (316)
T d1fota_         176 KPYNKSIDWWS-FGILIYEMLAGYTPFYDSNTMKTYEKILNA--ELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTE  252 (316)
T ss_dssp             CCBCTTHHHHH-HHHHHHHHHHSSCTTCCSSHHHHHHHHHHC--CCCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTH
T ss_pred             CCCCchhhccc-cchhHHHHHhCCCCCCCcCHHHHHHHHHcC--CCCCCCCCCHHHHHHHHHHhhhCHHhccccchhhHH
Confidence            88888889999 999999999999999876555555555533  34445678999999999999999          799


Q ss_pred             HHHcCCCCCCCC
Q 013230          431 EAIFDPFFSDLI  442 (447)
Q Consensus       431 elL~HPff~~~~  442 (447)
                      |+|+||||+++.
T Consensus       253 ~il~Hp~f~~i~  264 (316)
T d1fota_         253 DVKNHPWFKEVV  264 (316)
T ss_dssp             HHHTSGGGSSCC
T ss_pred             HHHcCcccccCC
Confidence            999999999864

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.4e-45  Score=358.79  Aligned_cols=239  Identities=19%  Similarity=0.232  Sum_probs=186.7

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||+||+|++      ||+|++.....       ......+.+|+.+|+.|+|        ||    ||+
T Consensus        11 Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~-------~~~~~~~~~Ei~il~~l~H--------pn----Iv~   71 (307)
T d1a06a_          11 YDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKAL-------EGKEGSMENEIAVLHKIKH--------PN----IVA   71 (307)
T ss_dssp             EEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC-----------------CHHHHHHHTCCC--------TT----BCC
T ss_pred             eEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHh-------hhHHHHHHHHHHHHHhCCC--------CC----CCc
Confidence            49999999999999999974      99999986532       1123457899999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++..                              ++.+|||||||+|| +|.+++.    +++.+++.++.||+.||
T Consensus        72 l~~~~~~------------------------------~~~~~lvmE~~~gg-~L~~~l~~~~~l~e~~~~~~~~qi~~al  120 (307)
T d1a06a_          72 LDDIYES------------------------------GGHLYLIMQLVSGG-ELFDRIVEKGFYTERDASRLIFQVLDAV  120 (307)
T ss_dssp             EEEEEEC------------------------------SSEEEEEECCCCSC-BHHHHHHTCSCCCHHHHHHHHHHHHHHH
T ss_pred             EEEEEEE------------------------------CCEEEEEEeccCCC-cHHHhhhcccCCCHHHHHHHHHHHHHHH
Confidence            9999643                              56799999999988 9999886    99999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDPELFS  359 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~pelf~  359 (447)
                      +|||+ +||+||||||+|||+.....                 +..+||+|||+|+.....    ..+....|++||++.
T Consensus       121 ~ylH~-~~iiHrDiKp~Nil~~~~~~-----------------~~~vkl~DFG~a~~~~~~~~~~~~~GT~~y~APE~~~  182 (307)
T d1a06a_         121 KYLHD-LGIVHRDLKPENLLYYSLDE-----------------DSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLA  182 (307)
T ss_dssp             HHHHH-TTCCCSCCCGGGEEESSSST-----------------TCCEEECCC------------------CTTSCHHHHT
T ss_pred             Hhhhh-ceeeeEEecccceeecccCC-----------------CceEEEeccceeEEccCCCeeeeeeeCccccCcHHHc
Confidence            99999 99999999999999975320                 017999999999876543    223556799999999


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCC--CCccchHHHHHHHHHhcccc-----CHHHH
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFD--RSSKDERDLRSLKKRLDKYN-----SAKEA  432 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~--~~~~~s~~l~dLl~~mL~~d-----sa~el  432 (447)
                      +..++.+.|||+ +|++.+++.+|..||...........++.....++  .+..+|+++++||++||++|     ||+|+
T Consensus       183 ~~~~~~~~DiwS-lGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~ei  261 (307)
T d1a06a_         183 QKPYSKAVDCWS-IGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQA  261 (307)
T ss_dssp             TCCCCTHHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred             CCCCCcHHHhhh-hhHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCCCCccccCCCHHHHHHHHHHccCCHhHCcCHHHH
Confidence            988888889999 99999999999999987655555555554443333  24578999999999999999     99999


Q ss_pred             HcCCCCCCC
Q 013230          433 IFDPFFSDL  441 (447)
Q Consensus       433 L~HPff~~~  441 (447)
                      |+||||++.
T Consensus       262 l~hp~~~~~  270 (307)
T d1a06a_         262 LQHPWIAGD  270 (307)
T ss_dssp             HHSTTTTSS
T ss_pred             hcCHhhCCC
Confidence            999999853

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-45  Score=353.34  Aligned_cols=237  Identities=22%  Similarity=0.246  Sum_probs=188.3

Q ss_pred             CCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccce
Q 013230          132 SDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~i  205 (447)
                      .+|++++.||+|+||+||+|++      ||+|++.....      .+...+.+.+|+.+|++++|        ||    |
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~------~~~~~~~~~~E~~il~~l~H--------pn----I   65 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSM------TEAEKQMLVSEVNLLRELKH--------PN----I   65 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTS------CHHHHHHHHHHHHHTTSCCC--------TT----B
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhC------CHHHHHHHHHHHHHHHHCCC--------CC----E
Confidence            3569999999999999999974      99999875532      23334678999999999998        88    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------CCHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------LNINEARSLLV  277 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------l~~~~~~~i~~  277 (447)
                      |++++++...                            .++.+|||||||.|| +|.+++.        +++..++.++.
T Consensus        66 v~~~~~~~~~----------------------------~~~~~~ivmEy~~~g-~L~~~i~~~~~~~~~l~e~~~~~i~~  116 (269)
T d2java1          66 VRYYDRIIDR----------------------------TNTTLYIVMEYCEGG-DLASVITKGTKERQYLDEEFVLRVMT  116 (269)
T ss_dssp             CCEEEEEEC--------------------------------CEEEEEECCTTE-EHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             eeEEEEEEeC----------------------------CCCEEEEEEecCCCC-cHHHHHHhccccCCCCCHHHHHHHHH
Confidence            9999986531                            245699999999998 9999874        89999999999


Q ss_pred             HHHHHHHHHHHhCC-----eeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEE
Q 013230          278 QVTAGLAVAEAAYE-----FEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIF  347 (447)
Q Consensus       278 Qil~gL~ylH~~~~-----iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i  347 (447)
                      ||+.||+|||+ .|     ||||||||+|||++.++                    .+||+|||+|+.....     +..
T Consensus       117 qi~~al~ylH~-~~~~~~~IiHrDiKp~NIll~~~~--------------------~vkl~DFG~a~~~~~~~~~~~~~~  175 (269)
T d2java1         117 QLTLALKECHR-RSDGGHTVLHRDLKPANVFLDGKQ--------------------NVKLGDFGLARILNHDTSFAKAFV  175 (269)
T ss_dssp             HHHHHHHHHHH-HCC---------CCGGGEEECTTS--------------------CEEECCHHHHHHC-----------
T ss_pred             HHHHHHHHHHH-hcCCCCCEEeCcCchhhcCcCCCC--------------------cEEEeeccceeecccCCCccccCC
Confidence            99999999998 65     99999999999999987                    7999999999876543     223


Q ss_pred             EEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc
Q 013230          348 FLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN  427 (447)
Q Consensus       348 ~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d  427 (447)
                      ....|++||++.+..++.+.|||+ +|++.+++++|..||...........+.. ....+.+..+++++++||++||+.|
T Consensus       176 gt~~Y~APE~l~~~~~~~~~DIwS-lGvilyel~tg~~Pf~~~~~~~~~~~i~~-~~~~~~~~~~s~~l~~li~~~L~~d  253 (269)
T d2java1         176 GTPYYMSPEQMNRMSYNEKSDIWS-LGCLLYELCALMPPFTAFSQKELAGKIRE-GKFRRIPYRYSDELNEIITRMLNLK  253 (269)
T ss_dssp             CCCSCCCHHHHTTCCCCHHHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHH-TCCCCCCTTSCHHHHHHHHHHTCSS
T ss_pred             CCcccCCHHHHcCCCCChHHHHHh-hCHHHHHHhhCCCCCCCCCHHHHHHHHHc-CCCCCCCcccCHHHHHHHHHHcCCC
Confidence            345599999999988888889999 99999999999999976554444444332 2223345678999999999999999


Q ss_pred             -----CHHHHHcCCCC
Q 013230          428 -----SAKEAIFDPFF  438 (447)
Q Consensus       428 -----sa~elL~HPff  438 (447)
                           |++|+|+|||.
T Consensus       254 p~~Rps~~ell~hp~i  269 (269)
T d2java1         254 DYHRPSVEEILENPLI  269 (269)
T ss_dssp             GGGSCCHHHHHTSTTC
T ss_pred             hhHCcCHHHHHhCCcC
Confidence                 99999999995

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.8e-45  Score=362.94  Aligned_cols=237  Identities=17%  Similarity=0.190  Sum_probs=202.1

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+++++||+|+||.||+|++      ||||++.....     ......+.+.+|+.+|+.++|        ||    ||+
T Consensus        43 y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~-----~~~~~~~~~~~E~~il~~l~h--------pn----Iv~  105 (350)
T d1rdqe_          43 FDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKV-----VKLKQIEHTLNEKRILQAVNF--------PF----LVK  105 (350)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHH-----HHTTCHHHHHHHHHHHTTCCC--------TT----BCC
T ss_pred             eEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHc-----cCHHHHHHHHHHHHHHHHcCC--------Cc----Eee
Confidence            39999999999999999974      99999875421     223445778999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      ++++|..                              .+.+|+||||+.|| +|..++.    +++..++.++.||+.||
T Consensus       106 ~~~~~~~------------------------------~~~~~~v~e~~~~g-~l~~~l~~~~~l~e~~~~~i~~qi~~aL  154 (350)
T d1rdqe_         106 LEFSFKD------------------------------NSNLYMVMEYVAGG-EMFSHLRRIGRFSEPHARFYAAQIVLTF  154 (350)
T ss_dssp             EEEEEEC------------------------------SSEEEEEEECCTTC-BHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             ccccccc------------------------------cccccccccccccc-chhhhHhhcCCCCHHHHHHHHHHHHHHH
Confidence            9999643                              56799999999998 8888775    99999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--CEEEEecCCCCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--DIFFLDLSQDPELFSGP  361 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--g~i~~~~~~~pelf~g~  361 (447)
                      .|||+ +|||||||||+|||++.++                    .+||+|||+|+.....  .......|++||++.+.
T Consensus       155 ~yLH~-~~iiHRDIKP~NILl~~~g--------------------~ikL~DFG~a~~~~~~~~~~~Gt~~Y~APE~~~~~  213 (350)
T d1rdqe_         155 EYLHS-LDLIYRDLKPENLLIDQQG--------------------YIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSK  213 (350)
T ss_dssp             HHHHH-TTEECCCCSGGGEEECTTS--------------------CEEECCCTTCEECSSCBCCCEECGGGCCHHHHTTC
T ss_pred             HHHHh-CCEecCcCCHHHcccCCCC--------------------CEEeeeceeeeecccccccccCccccCCHHHHcCC
Confidence            99999 9999999999999999987                    7999999999987654  23455669999999998


Q ss_pred             CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc----------CHHH
Q 013230          362 KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN----------SAKE  431 (447)
Q Consensus       362 ~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d----------sa~e  431 (447)
                      .++...|||+ +|++.+++++|..||...........+..  ..+..+..+++++++||++||++|          ||+|
T Consensus       214 ~~~~~~DiwS-lGvilyemltG~~Pf~~~~~~~~~~~i~~--~~~~~p~~~s~~~~~li~~~L~~dP~kR~~~~r~t~~e  290 (350)
T d1rdqe_         214 GYNKAVDWWA-LGVLIYEMAAGYPPFFADQPIQIYEKIVS--GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVND  290 (350)
T ss_dssp             CBCTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHH--CCCCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHH
T ss_pred             CCCccccccc-hhHHHHHHHhCCCCCCCcCHHHHHHHHhc--CCCCCCccCCHHHHHHHHHHhhhCHHhccccccccHHH
Confidence            8888889999 99999999999999987655555555543  344455679999999999999999          7999


Q ss_pred             HHcCCCCCCCC
Q 013230          432 AIFDPFFSDLI  442 (447)
Q Consensus       432 lL~HPff~~~~  442 (447)
                      +++||||++..
T Consensus       291 ll~Hp~f~~~~  301 (350)
T d1rdqe_         291 IKNHKWFATTD  301 (350)
T ss_dssp             HHTSGGGTTCC
T ss_pred             HHcCccccCCC
Confidence            99999999764

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-45  Score=349.55  Aligned_cols=238  Identities=17%  Similarity=0.213  Sum_probs=191.1

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+..++||+|+||+||+|++      ||+|++.....      .....+.+.+|+++|++|+|        ||    ||+
T Consensus        11 ~~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~------~~~~~~~~~~E~~il~~l~H--------pn----Iv~   72 (270)
T d1t4ha_          11 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKL------TKSERQRFKEEAEMLKGLQH--------PN----IVR   72 (270)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGS------CHHHHHHHHHHHHHHTTCCC--------TT----BCC
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhC------CHHHHHHHHHHHHHHHhCCC--------CC----eee
Confidence            36778999999999999974      89999875432      22334678999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      ++++|....                          ..+..+|||||||+|| +|.+++.    +++..++.++.||+.||
T Consensus        73 ~~~~~~~~~--------------------------~~~~~~~ivmE~~~~g-~L~~~l~~~~~~~~~~~~~~~~qi~~gl  125 (270)
T d1t4ha_          73 FYDSWESTV--------------------------KGKKCIVLVTELMTSG-TLKTYLKRFKVMKIKVLRSWCRQILKGL  125 (270)
T ss_dssp             EEEEEEEES--------------------------SSCEEEEEEEECCCSC-BHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             EEEEEeecc--------------------------ccCCEEEEEEeCCCCC-cHHHHHhccccccHHHHHHHHHHHHHHH
Confidence            999975421                          1145689999999998 9999886    99999999999999999


Q ss_pred             HHHHHhCC--eeeccCCCCCEEEec-CCCccccccccCcccccccCCCcEEEeeccceeecCCCC---EEEEecCCCCCC
Q 013230          284 AVAEAAYE--FEHRDLHWGNVLLSR-NDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED---IFFLDLSQDPEL  357 (447)
Q Consensus       284 ~ylH~~~~--iiHrDLKpeNILl~~-~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g---~i~~~~~~~pel  357 (447)
                      +|||+ ++  |+||||||+|||++. ++                    .+||+|||+|+......   .+....|++||+
T Consensus       126 ~yLH~-~~~~IiHrDiKp~NILl~~~~~--------------------~~Kl~DFGla~~~~~~~~~~~~GT~~Y~aPE~  184 (270)
T d1t4ha_         126 QFLHT-RTPPIIHRDLKCDNIFITGPTG--------------------SVKIGDLGLATLKRASFAKAVIGTPEFMAPEM  184 (270)
T ss_dssp             HHHHT-SSSCCCCSCCCGGGEEESSTTS--------------------CEEECCTTGGGGCCTTSBEESCSSCCCCCGGG
T ss_pred             HHHHH-CCCCEEeCCcChhhceeeCCCC--------------------CEEEeecCcceeccCCccCCcccCccccCHHH
Confidence            99999 88  999999999999975 44                    79999999998755432   223456999999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccC-CCCCccchHHHHHHHHHhcccc-----CHHH
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKT-FDRSSKDERDLRSLKKRLDKYN-----SAKE  431 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~-~~~~~~~s~~l~dLl~~mL~~d-----sa~e  431 (447)
                      +.+ .++...|||+ +|++.+++++|..||........+.+.+..... ...+...++++++||++||.+|     ||+|
T Consensus       185 ~~~-~~~~~~DIwS-lGvilyel~~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~e  262 (270)
T d1t4ha_         185 YEE-KYDESVDVYA-FGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKD  262 (270)
T ss_dssp             GGT-CCCTHHHHHH-HHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred             hCC-CCCCcCchhh-HHHHHHHHHHCCCCCCCcccHHHHHHHHHcCCCCcccCccCCHHHHHHHHHHccCCHhHCcCHHH
Confidence            987 4777889999 999999999999999654333333333322211 1223457899999999999999     9999


Q ss_pred             HHcCCCCC
Q 013230          432 AIFDPFFS  439 (447)
Q Consensus       432 lL~HPff~  439 (447)
                      +|+||||+
T Consensus       263 ll~Hp~fk  270 (270)
T d1t4ha_         263 LLNHAFFQ  270 (270)
T ss_dssp             HHTSGGGC
T ss_pred             HhCCcccC
Confidence            99999996

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=3.7e-44  Score=357.58  Aligned_cols=243  Identities=19%  Similarity=0.197  Sum_probs=200.7

Q ss_pred             hhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCC
Q 013230          127 LFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLN  200 (447)
Q Consensus       127 ~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n  200 (447)
                      +.++|   ++++.||+|+||.||+|++      ||+|++....        ....+.+.+|+.+|++|+|        ||
T Consensus        24 il~~Y---~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~--------~~~~~~~~~E~~il~~l~H--------pn   84 (350)
T d1koaa2          24 VLDHY---DIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH--------ESDKETVRKEIQTMSVLRH--------PT   84 (350)
T ss_dssp             GGGTE---EEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCS--------HHHHHHHHHHHHHHHHTCC--------TT
T ss_pred             CccCe---EEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccc--------hhhHHHHHHHHHHHHhCCC--------CC
Confidence            45555   9999999999999999974      9999987442        1234678899999999998        88


Q ss_pred             cccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHH
Q 013230          201 ACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSL  275 (447)
Q Consensus       201 ~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i  275 (447)
                          ||+++++|..                              ++.+|||||||.|| +|.+++.     +++..++.+
T Consensus        85 ----Iv~~~~~~~~------------------------------~~~~~ivmE~~~gg-~L~~~l~~~~~~l~e~~~~~i  129 (350)
T d1koaa2          85 ----LVNLHDAFED------------------------------DNEMVMIYEFMSGG-ELFEKVADEHNKMSEDEAVEY  129 (350)
T ss_dssp             ----BCCEEEEEEE------------------------------TTEEEEEECCCCSC-BHHHHHTCTTSCBCHHHHHHH
T ss_pred             ----CCcEEEEEEE------------------------------CCEEEEEEEcCCCC-CHHHHHHhhcCCCCHHHHHHH
Confidence                9999999654                              57799999999998 9988874     899999999


Q ss_pred             HHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE----EEEec
Q 013230          276 LVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI----FFLDL  351 (447)
Q Consensus       276 ~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~----i~~~~  351 (447)
                      +.||+.||+|||+ +|||||||||+|||++.+..                  ..+||+|||+|+.......    .....
T Consensus       130 ~~qi~~aL~ylH~-~~iiHrDiKp~NIll~~~~~------------------~~vkL~DFG~a~~~~~~~~~~~~~gT~~  190 (350)
T d1koaa2         130 MRQVCKGLCHMHE-NNYVHLDLKPENIMFTTKRS------------------NELKLIDFGLTAHLDPKQSVKVTTGTAE  190 (350)
T ss_dssp             HHHHHHHHHHHHH-TTEECCCCCGGGEEESSTTS------------------CCEEECCCTTCEECCTTSCEEEECSCTT
T ss_pred             HHHHHHHHHHHHh-cCCeeeeechhHeeeccCCC------------------CeEEEeecchheecccccccceecCccc
Confidence            9999999999999 99999999999999975431                  1799999999998765432    22345


Q ss_pred             CCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc--
Q 013230          352 SQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       352 ~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d--  427 (447)
                      |++||++.+..++...|||+ +|++.+++++|..||........+..+......++.  ...++++++|||++||++|  
T Consensus       191 Y~aPEv~~~~~~~~~~DiwS-lGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~  269 (350)
T d1koaa2         191 FAAPEVAEGKPVGYYTDMWS-VGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPN  269 (350)
T ss_dssp             TCCHHHHHTCCBCHHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCCGGGGGCCHHHHHHHHHHCCSSGG
T ss_pred             ccCHHHHcCCCCChhHhhhh-hhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChh
Confidence            99999999988887889999 999999999999999765444445555433333332  2468999999999999999  


Q ss_pred             ---CHHHHHcCCCCCCCCC
Q 013230          428 ---SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       428 ---sa~elL~HPff~~~~~  443 (447)
                         ||+|+|+||||++...
T Consensus       270 ~R~t~~eil~hp~~~~~~~  288 (350)
T d1koaa2         270 TRMTIHQALEHPWLTPGNA  288 (350)
T ss_dssp             GSCCHHHHHHSTTTSCTTC
T ss_pred             HCcCHHHHhcCcccCCCCC
Confidence               9999999999997654

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-45  Score=364.46  Aligned_cols=238  Identities=17%  Similarity=0.210  Sum_probs=190.7

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+++++||+|+||+||+|++      ||+|+++...       .......+.+|+.+|+.++|        ||    ||
T Consensus         7 ~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~-------~~~~~~~~~~Ei~il~~l~H--------pn----Iv   67 (322)
T d1s9ja_           7 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI-------KPAIRNQIIRELQVLHECNS--------PY----IV   67 (322)
T ss_dssp             GEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCC-------CTTHHHHHHHHGGGGGGCCC--------TT----BC
T ss_pred             CCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhh-------CHHHHHHHHHHHHHHHhCCC--------CC----CC
Confidence            459999999999999999984      9999987542       22344678999999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      +++++|..                              ++.+|||||||.|| +|.+++.    +++..++.++.||+.|
T Consensus        68 ~l~~~~~~------------------------------~~~~~iVmEy~~gg-~L~~~l~~~~~l~~~~~~~~~~qil~a  116 (322)
T d1s9ja_          68 GFYGAFYS------------------------------DGEISICMEHMDGG-SLDQVLKKAGRIPEQILGKVSIAVIKG  116 (322)
T ss_dssp             CEEEEEEC------------------------------SSEEEEEEECCTTE-EHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             cEEEEEEE------------------------------CCEEEEEEEcCCCC-cHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence            99999653                              56799999999988 9999886    9999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---CEEEEecCCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---DIFFLDLSQDPELFS  359 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---g~i~~~~~~~pelf~  359 (447)
                      |+|||+.+||+||||||+|||++.++                    .+||+|||+|+.....   ..+....|++||++.
T Consensus       117 L~yLH~~~~IiHRDiKP~NILl~~~~--------------------~vkl~DFGla~~~~~~~~~~~~GT~~Y~APEvl~  176 (322)
T d1s9ja_         117 LTYLREKHKIMHRDVKPSNILVNSRG--------------------EIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQ  176 (322)
T ss_dssp             HHHHHHHHCCCCSCCSGGGEEECTTC--------------------CEEECCCCCCHHHHHHTC---CCSSCCCCHHHHH
T ss_pred             HHHHHHhCCEEccccCHHHeeECCCC--------------------CEEEeeCCCccccCCCccccccCCccccCchHHc
Confidence            99999636999999999999999987                    7999999999864322   334455699999999


Q ss_pred             CCCCCchHHHHHhhccCCcccccCCCCCChhHH--HHH---------------------------------------HHH
Q 013230          360 GPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLW--LVY---------------------------------------LVD  398 (447)
Q Consensus       360 g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~--~~~---------------------------------------~~~  398 (447)
                      +..++...|||+ +|++.+++..|..||.....  ...                                       ...
T Consensus       177 ~~~y~~~~DiWS-lGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (322)
T d1s9ja_         177 GTHYSVQSDIWS-MGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLD  255 (322)
T ss_dssp             CSCCCTTHHHHH-HHHHHHHHHHSSCCSSCCCTTHHHHHC------------------------------CCCCHHHHHH
T ss_pred             CCCCCcHHHHHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCcccccccccccccccccccchhHHHHHh
Confidence            988888899999 99999999999988853210  000                                       000


Q ss_pred             HHhhccCCCC-CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCC
Q 013230          399 MLLLKKTFDR-SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDL  441 (447)
Q Consensus       399 ~l~~~~~~~~-~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~  441 (447)
                      .......... ....|.+++|||++||++|     ||+|+|+||||++.
T Consensus       256 ~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~Hpf~~~~  304 (322)
T d1s9ja_         256 YIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRS  304 (322)
T ss_dssp             HHHTSCCCCCCBTTBCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHHH
T ss_pred             hhhccCCccCccccCCHHHHHHHHHHcCCChhHCcCHHHHhhCHhhCcC
Confidence            0000000011 1246899999999999999     99999999999753

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-44  Score=354.24  Aligned_cols=240  Identities=20%  Similarity=0.227  Sum_probs=199.3

Q ss_pred             hhhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCC
Q 013230          126 DLFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTL  199 (447)
Q Consensus       126 ~~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~  199 (447)
                      +++++|   ++++.||+|+||+||+|++      ||+|+++.+..         ....+.+|+.+|+.++|        |
T Consensus         2 ~~~~rY---~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~---------~~~~~~~Ei~il~~l~H--------p   61 (321)
T d1tkia_           2 ELYEKY---MIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGT---------DQVLVKKEISILNIARH--------R   61 (321)
T ss_dssp             CCTTTE---EEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTH---------HHHHHHHHHHHHHHSCC--------T
T ss_pred             CCccce---EEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcc---------cHHHHHHHHHHHHhCCC--------C
Confidence            345666   9999999999999999984      99999975421         22457899999999998        8


Q ss_pred             CcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHH
Q 013230          200 NACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARS  274 (447)
Q Consensus       200 n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~  274 (447)
                      |    ||+++++|..                              ++.+|||||||.|| +|.+++.     +++.+++.
T Consensus        62 n----Iv~~~~~~~~------------------------------~~~~~lvmE~~~gg-~L~~~i~~~~~~l~e~~~~~  106 (321)
T d1tkia_          62 N----ILHLHESFES------------------------------MEELVMIFEFISGL-DIFERINTSAFELNEREIVS  106 (321)
T ss_dssp             T----BCCEEEEEEE------------------------------TTEEEEEECCCCCC-BHHHHHTSSSCCCCHHHHHH
T ss_pred             C----CCeEEEEEEE------------------------------CCEEEEEEecCCCC-cHHHHHHhcCCCCCHHHHHH
Confidence            8    9999999754                              56799999999988 9999885     89999999


Q ss_pred             HHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCEE----EEe
Q 013230          275 LLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDIF----FLD  350 (447)
Q Consensus       275 i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~i----~~~  350 (447)
                      ++.||+.||+|||+ +||+||||||+|||++.++.                  ..+||+|||+|+........    ...
T Consensus       107 i~~qi~~al~yLH~-~~iiHrDlKp~NIll~~~~~------------------~~ikl~DFG~~~~~~~~~~~~~~~~t~  167 (321)
T d1tkia_         107 YVHQVCEALQFLHS-HNIGHFDIRPENIIYQTRRS------------------STIKIIEFGQARQLKPGDNFRLLFTAP  167 (321)
T ss_dssp             HHHHHHHHHHHHHH-TTEECCCCCGGGEEESSSSC------------------CCEEECCCTTCEECCTTCEEEEEESCG
T ss_pred             HHHHHHHHHHHHHH-cCCCcccccccceeecCCCc------------------eEEEEcccchhhccccCCccccccccc
Confidence            99999999999999 99999999999999986541                  26999999999987654321    223


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc-
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN-  427 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d-  427 (447)
                      .|++||.+.+..++...|||+ +|++.++++.|..||........+..+......++.  ...+|++++|||++||++| 
T Consensus       168 ~y~ape~~~~~~~~~~~DiWS-lGvily~ll~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp  246 (321)
T d1tkia_         168 EYYAPEVHQHDVVSTATDMWS-LGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKER  246 (321)
T ss_dssp             GGSCHHHHTTCEECHHHHHHH-HHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSG
T ss_pred             ccccchhccCCCCCchhhccc-HHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCChhhccCCCHHHHHHHHHHccCCh
Confidence            488999998887788889999 999999999999999776555555555543333332  2357999999999999999 


Q ss_pred             ----CHHHHHcCCCCCC
Q 013230          428 ----SAKEAIFDPFFSD  440 (447)
Q Consensus       428 ----sa~elL~HPff~~  440 (447)
                          ||+|+|+||||++
T Consensus       247 ~~R~s~~eil~hp~~~~  263 (321)
T d1tkia_         247 KSRMTASEALQHPWLKQ  263 (321)
T ss_dssp             GGSCCHHHHHHSHHHHS
T ss_pred             hHCcCHHHHhcCHhhcc
Confidence                9999999999974

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=1.4e-43  Score=342.33  Aligned_cols=244  Identities=20%  Similarity=0.256  Sum_probs=197.0

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCccccc-ccccchHHHHHHHHHHHhcc-ccccCCCCCCCcccc
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNG-EAQKKSEELLEEVVLSWTLN-HLRRNEGDTLNACTT  204 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~-~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~n~~~~  204 (447)
                      +|++++.||+|+||+||+|++      ||+|++.......... ..+...+.+.+|+.+|++|+ |        ||    
T Consensus         4 ~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h--------pn----   71 (277)
T d1phka_           4 NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGH--------PN----   71 (277)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTC--------TT----
T ss_pred             cCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCC--------CC----
Confidence            459999999999999999984      9999998764321111 11223457889999999997 6        77    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVT  280 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil  280 (447)
                      ||++++++..                              ++.+|||||||+|| +|.+++.    +++.+++.++.||+
T Consensus        72 Iv~~~~~~~~------------------------------~~~~~ivmE~~~~g-~L~~~l~~~~~l~e~~~~~~~~qi~  120 (277)
T d1phka_          72 IIQLKDTYET------------------------------NTFFFLVFDLMKKG-ELFDYLTEKVTLSEKETRKIMRALL  120 (277)
T ss_dssp             BCCEEEEEEC------------------------------SSEEEEEEECCTTC-BHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             eEEEEeeccc------------------------------CcceEEEEEcCCCc-hHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            9999999643                              67799999999988 9999986    99999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPE  356 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pe  356 (447)
                      .||+|||+ +||+||||||+|||++.++                    .+||+|||+|+......    ......|++||
T Consensus       121 ~al~~lH~-~~ivHrDlkp~Nill~~~~--------------------~~kl~DFG~a~~~~~~~~~~~~~gt~~y~~PE  179 (277)
T d1phka_         121 EVICALHK-LNIVHRDLKPENILLDDDM--------------------NIKLTDFGFSCQLDPGEKLREVCGTPSYLAPE  179 (277)
T ss_dssp             HHHHHHHH-TTEECSCCSGGGEEECTTC--------------------CEEECCCTTCEECCTTCCBCCCCSCGGGCCHH
T ss_pred             HHHHHHHH-cCCcccccccceEEEcCCC--------------------CeEEccchheeEccCCCceeeeeccCCCCCHH
Confidence            99999999 9999999999999999887                    79999999998865432    12234578888


Q ss_pred             CCCC------CCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC--CccchHHHHHHHHHhcccc-
Q 013230          357 LFSG------PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR--SSKDERDLRSLKKRLDKYN-  427 (447)
Q Consensus       357 lf~g------~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~--~~~~s~~l~dLl~~mL~~d-  427 (447)
                      .+.+      ...+.+.|||+ +|++.+++.+|..||...........++.....++.  ...+|++++|||++||+.| 
T Consensus       180 ~~~~~~~~~~~~~~~~~Diws-lGvilyeml~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p  258 (277)
T d1phka_         180 IIECSMNDNHPGYGKEVDMWS-TGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQP  258 (277)
T ss_dssp             HHHHHHCTTSCCBCTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSG
T ss_pred             HhhccccccCCCCCchheEcc-cchhhhhhccCCCCCCCCCHHHHHHHHHhCCCCCCCcccccCCHHHHHHHHHHccCCh
Confidence            7743      23345679999 999999999999999876544444444443333333  3478999999999999999 


Q ss_pred             ----CHHHHHcCCCCCCC
Q 013230          428 ----SAKEAIFDPFFSDL  441 (447)
Q Consensus       428 ----sa~elL~HPff~~~  441 (447)
                          |++|+|+||||++.
T Consensus       259 ~~R~s~~eil~h~~~~~~  276 (277)
T d1phka_         259 QKRYTAEEALAHPFFQQY  276 (277)
T ss_dssp             GGSCCHHHHTTSGGGCTT
T ss_pred             hHCcCHHHHHcCHHHHHh
Confidence                99999999999875

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-44  Score=346.92  Aligned_cols=244  Identities=20%  Similarity=0.200  Sum_probs=188.0

Q ss_pred             cceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          135 ENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      |.+++||+|+||+||+|++      ||||+++....   ....+.....+.+|+.+|+.++|        ||    ||++
T Consensus         1 E~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~---~~~~~~~~~~~~~Ei~il~~l~h--------pn----Iv~~   65 (299)
T d1ua2a_           1 EKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHR---SEAKDGINRTALREIKLLQELSH--------PN----IIGL   65 (299)
T ss_dssp             CEEEEEEEETTEEEEEEECSSCCSEEEEEEC---------------CTHHHHHHHHHHHCCC--------TT----BCCE
T ss_pred             CcceEeccCcCeEEEEEEECCCCcEEEEEEEehhhh---hhhhHHHHHHHHHHHHHHHhCCC--------CC----EeEE
Confidence            4679999999999999973      99999875532   11222234678999999999998        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~  284 (447)
                      ++++..                              ++.+|||||||.+| ++..+..    +++..++.+++||+.||+
T Consensus        66 ~~~~~~------------------------------~~~~~ivmE~~~~~-~~~~~~~~~~~l~~~~~~~~~~qil~aL~  114 (299)
T d1ua2a_          66 LDAFGH------------------------------KSNISLVFDFMETD-LEVIIKDNSLVLTPSHIKAYMLMTLQGLE  114 (299)
T ss_dssp             EEEECC------------------------------TTCCEEEEECCSEE-HHHHHTTCCSSCCSSHHHHHHHHHHHHHH
T ss_pred             Eeeecc------------------------------CCceeehhhhhcch-HHhhhhhcccCCCHHHHHHHHHHHHHHHH
Confidence            999543                              56799999999977 6666654    899999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPELFS  359 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pelf~  359 (447)
                      |||+ +||+||||||+|||++.++                    .+||+|||+|+.....     ..+....|++||++.
T Consensus       115 ~lH~-~~iiHrDiKp~NIli~~~~--------------------~~KL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~  173 (299)
T d1ua2a_         115 YLHQ-HWILHRDLKPNNLLLDENG--------------------VLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLF  173 (299)
T ss_dssp             HHHH-TTCCCCCCCGGGEEECTTC--------------------CEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHT
T ss_pred             Hhhc-cceecccCCcceEEecCCC--------------------ccccccCccccccCCCcccccceecChhhccHHHHc
Confidence            9999 9999999999999999987                    7999999999876543     223456699999886


Q ss_pred             CC-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh--c---cC---------------CCC------Cccc
Q 013230          360 GP-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL--K---KT---------------FDR------SSKD  412 (447)
Q Consensus       360 g~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~--~---~~---------------~~~------~~~~  412 (447)
                      +. .++.+.|||+ +|++.+++.+|..||........+..+...  .   ..               ++.      ....
T Consensus       174 ~~~~~~~~~DiwS-lGvil~el~~g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (299)
T d1ua2a_         174 GARMYGVGVDMWA-VGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAA  252 (299)
T ss_dssp             TCSCCCHHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTC
T ss_pred             cCCCCChhhhhhh-cchHHHHHHhCcCCCCCCCHHHHHHHHHHhcCCCChhhccchhccchhhhhccCCCCChHHhcccC
Confidence            54 4566779999 999999999999888654333333332210  0   00               000      1246


Q ss_pred             hHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCCCC
Q 013230          413 ERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVDRP  446 (447)
Q Consensus       413 s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~~~  446 (447)
                      +++++|||++||++|     ||+|+|+||||++.+.+.|
T Consensus       253 s~~~~dll~~~L~~dP~~R~sa~e~L~Hp~f~~~p~p~~  291 (299)
T d1ua2a_         253 GDDLLDLIQGLFLFNPCARITATQALKMKYFSNRPGPTP  291 (299)
T ss_dssp             CHHHHHHHHHHHCSSTTTSCCHHHHHTSGGGTSSSCCCC
T ss_pred             CHHHHHHHHHHccCChhhCcCHHHHhCCHhhCCCCCCCC
Confidence            899999999999999     9999999999998876654

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-43  Score=354.80  Aligned_cols=241  Identities=20%  Similarity=0.138  Sum_probs=191.1

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++++.||+|+||.||+|++      ||+|++.....     ........+.+|..+++.++++.|     ||    ||
T Consensus         5 dy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~-----~~~~~~~~~~~e~~~~~~l~~~~h-----pn----Iv   70 (364)
T d1omwa3           5 DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRI-----KMKQGETLALNERIMLSLVSTGDC-----PF----IV   70 (364)
T ss_dssp             TEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHH-----HHHTCHHHHHHHHHHHHHHSSSCC-----TT----BC
T ss_pred             hCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHc-----chhhHHHHHHHHHHHHHHHhcCCC-----Cc----EE
Confidence            569999999999999999974      99999875422     112233445667666666555333     66    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      +++++|..                              ++.+|||||||.|| +|.+++.    +++..++.++.||+.|
T Consensus        71 ~l~~~~~~------------------------------~~~~~ivmE~~~gg-~L~~~l~~~~~~~e~~~~~~~~qi~~a  119 (364)
T d1omwa3          71 CMSYAFHT------------------------------PDKLSFILDLMNGG-DLHYHLSQHGVFSEADMRFYAAEIILG  119 (364)
T ss_dssp             CEEEEEEC------------------------------SSEEEEEECCCCSC-BHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             EEEEEEEE------------------------------CCEEEEEEEecCCC-cHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            99999643                              56799999999988 9999886    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---CEEEEecCCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---DIFFLDLSQDPELFS  359 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---g~i~~~~~~~pelf~  359 (447)
                      |+|||+ +|||||||||+|||++.++                    .+||+|||+|+.....   .......|++||++.
T Consensus       120 L~ylH~-~~iiHrDlKP~NILl~~~g--------------------~iKl~DFGla~~~~~~~~~~~~GT~~y~APE~~~  178 (364)
T d1omwa3         120 LEHMHN-RFVVYRDLKPANILLDEHG--------------------HVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQ  178 (364)
T ss_dssp             HHHHHH-TTEECCCCSGGGEEECSSS--------------------CEEECCCTTCEECSSSCCCSCCSCGGGCCHHHHS
T ss_pred             HHHHHH-CCccceeeccceeEEcCCC--------------------cEEEeeeceeeecCCCcccccccccccchhHHhh
Confidence            999999 9999999999999999987                    7999999999876543   223456699999986


Q ss_pred             C-CCCCchHHHHHhhccCCcccccCCCCCChhH---HHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C--
Q 013230          360 G-PKGDKQFDTYRKMKKVTEDQWEGSFPKTNVL---WLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S--  428 (447)
Q Consensus       360 g-~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~---~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s--  428 (447)
                      + ..++.+.|||+ +|++.+++++|..||....   .........  ....+.+..++++++|||.+||++|     |  
T Consensus       179 ~~~~~~~~~DiwS-lGvilyemltG~~Pf~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~  255 (364)
T d1omwa3         179 KGVAYDSSADWFS-LGCMLFKLLRGHSPFRQHKTKDKHEIDRMTL--TMAVELPDSFSPELRSLLEGLLQRDVNRRLGCL  255 (364)
T ss_dssp             TTCCCCTHHHHHH-HHHHHHHHHHSSCSSCSSCSSCHHHHHHHSS--SCCCCCCSSSCHHHHHHHHHHTCSSTTTSTTTS
T ss_pred             cCCCCCcccchhH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHhcc--cCCCCCCCCCCHHHHHHHHHHcccCHHHhCCCc
Confidence            4 45677789999 9999999999999986431   111111222  2334445679999999999999999     5  


Q ss_pred             ---HHHHHcCCCCCCCC
Q 013230          429 ---AKEAIFDPFFSDLI  442 (447)
Q Consensus       429 ---a~elL~HPff~~~~  442 (447)
                         |+|+++||||+++.
T Consensus       256 ~~~a~eil~Hp~f~~i~  272 (364)
T d1omwa3         256 GRGAQEVKESPFFRSLD  272 (364)
T ss_dssp             SSTHHHHHTSGGGTTCC
T ss_pred             ccCHHHHHcCccccCCC
Confidence               89999999999864

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-43  Score=343.89  Aligned_cols=243  Identities=25%  Similarity=0.342  Sum_probs=189.5

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+++++||+|+||+||+|++      ||+|++....      ..+...+.+.+|+.+|++++|        ||    ||
T Consensus         3 ~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~------~~~~~~~~~~~Ei~il~~l~H--------p~----Iv   64 (298)
T d1gz8a_           3 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDT------ETEGVPSTAIREISLLKELNH--------PN----IV   64 (298)
T ss_dssp             TEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------------CCHHHHHHHHHHTTCCC--------TT----BC
T ss_pred             CCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhh------cChHHHHHHHHHHHHHHhCCC--------Cc----EE
Confidence            569999999999999999974      9999987542      223345788999999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      +++++|..                              ++.+|+|||||.+| .+..+..     +++..++.++.||+.
T Consensus        65 ~~~~~~~~------------------------------~~~~~iv~e~~~~~-~~~~~~~~~~~~l~e~~~~~~~~qil~  113 (298)
T d1gz8a_          65 KLLDVIHT------------------------------ENKLYLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQLLQ  113 (298)
T ss_dssp             CEEEEEEE------------------------------TTEEEEEEECCSEE-HHHHHHHTTTTCCCHHHHHHHHHHHHH
T ss_pred             Eecccccc------------------------------ccceeEEEeecCCc-hhhhhhhhcccCCCHHHHHHHHHHHHH
Confidence            99999754                              56799999999854 3333222     899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-----CEEEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-----DIFFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-----g~i~~~~~~~pe  356 (447)
                      ||+|||+ +|||||||||+|||++.++                    .+||+|||+|+.....     ..+....|++||
T Consensus       114 ~L~yLH~-~~IiHrDiKpeNIl~~~~~--------------------~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~apE  172 (298)
T d1gz8a_         114 GLAFCHS-HRVLHRDLKPQNLLINTEG--------------------AIKLADFGLARAFGVPVRTYTHEVVTLWYRAPE  172 (298)
T ss_dssp             HHHHHHH-TTCCCSCCCGGGEEECTTS--------------------CEEECSTTHHHHHCCCSBCTTCCBCCCTTCCHH
T ss_pred             HHHHhhc-CCEEccccCchheeecccC--------------------cceeccCCcceeccCCcccceeecccceeeehh
Confidence            9999999 9999999999999999887                    7999999999876543     224456689999


Q ss_pred             CCCCCCC-CchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhcc------------------CCCC---------
Q 013230          357 LFSGPKG-DKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKK------------------TFDR---------  408 (447)
Q Consensus       357 lf~g~~~-~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~------------------~~~~---------  408 (447)
                      ++..... ..+.|||+ +|++.+++..|..||....-...+..+.....                  .++.         
T Consensus       173 ~~~~~~~~~~~~DiwS-lGvily~m~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (298)
T d1gz8a_         173 ILLGCKYYSTAVDIWS-LGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKV  251 (298)
T ss_dssp             HHTTCSSCCTHHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHH
T ss_pred             hhccccCCCccccccc-cchhhhHHhhCCCCCCCCCHHHHHHHHHHhcCCCchhhccccccccccccccccccccchhhh
Confidence            8877655 45669999 99999999999999865433232222221000                  0000         


Q ss_pred             CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCCCC
Q 013230          409 SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVDRP  446 (447)
Q Consensus       409 ~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~~~  446 (447)
                      ...++++++|||++||++|     ||+|+|+||||+++..|-|
T Consensus       252 ~~~~s~~~~dll~~mL~~dP~~R~t~~ell~H~ff~~~~~p~p  294 (298)
T d1gz8a_         252 VPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVP  294 (298)
T ss_dssp             STTCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTCCCCCC
T ss_pred             ccCCCHHHHHHHHHHccCChhHCcCHHHHhCCHhhccCCCCCC
Confidence            1245789999999999999     9999999999999877654

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-43  Score=346.49  Aligned_cols=238  Identities=19%  Similarity=0.203  Sum_probs=196.8

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHH-hccccccCCCCCCCcccce
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSW-TLNHLRRNEGDTLNACTTF  205 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~-~L~h~~~~~~~~~n~~~~i  205 (447)
                      +|+++++||+|+||+||+|++      ||+|++.....     ......+.+..|+.++. .++|        ||    |
T Consensus         3 dy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~-----~~~~~~~~~~~e~~~l~~~~~h--------p~----I   65 (320)
T d1xjda_           3 DFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVV-----LMDDDVECTMVEKRVLSLAWEH--------PF----L   65 (320)
T ss_dssp             TEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHH-----HHTTCHHHHHHHHHHHHHHTTC--------TT----B
T ss_pred             CeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhc-----cChHHHHHHHHHHHHHHHhCCC--------Cc----E
Confidence            569999999999999999984      99999975421     12233456777777765 6787        88    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTA  281 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~  281 (447)
                      |++++++..                              ++.+|||||||.|| +|.+++.    +++.+++.++.||+.
T Consensus        66 v~~~~~~~~------------------------------~~~~yivmEy~~~g-~L~~~i~~~~~~~e~~~~~~~~qi~~  114 (320)
T d1xjda_          66 THMFCTFQT------------------------------KENLFFVMEYLNGG-DLMYHIQSCHKFDLSRATFYAAEIIL  114 (320)
T ss_dssp             CCEEEEEEC------------------------------SSEEEEEEECCTTC-BHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             EEEEEEEcc------------------------------CCceeEEEeecCCC-cHHHHhhccCCCCHHHHHHHHHHHHH
Confidence            999999653                              56799999999998 9999987    999999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPE  356 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pe  356 (447)
                      ||+|||+ +||+||||||+|||++.++                    .+||+|||+|+......     ......|++||
T Consensus       115 al~ylH~-~~iiHrDikp~NiL~~~~~--------------------~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE  173 (320)
T d1xjda_         115 GLQFLHS-KGIVYRDLKLDNILLDKDG--------------------HIKIADFGMCKENMLGDAKTNTFCGTPDYIAPE  173 (320)
T ss_dssp             HHHHHHH-TTCBCCCCCGGGEEECTTS--------------------CEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHH
T ss_pred             HHHHHHh-CCeeeccCcccceeecCCC--------------------ceeccccchhhhcccccccccccCCCCCcCCHH
Confidence            9999999 9999999999999999987                    79999999998654331     12234589999


Q ss_pred             CCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH-
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK-  430 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~-  430 (447)
                      ++.+..++.++|||+ +|++.+++.+|..||...........+...  .+..+..++++++|||++||++|     |+. 
T Consensus       174 ~~~~~~~~~~~DiwS-lGvilyemltG~~PF~~~~~~~~~~~i~~~--~~~~p~~~s~~~~dli~~~L~~dP~~R~s~~~  250 (320)
T d1xjda_         174 ILLGQKYNHSVDWWS-FGVLLYEMLIGQSPFHGQDEEELFHSIRMD--NPFYPRWLEKEAKDLLVKLFVREPEKRLGVRG  250 (320)
T ss_dssp             HHTTCCBCTHHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHC--CCCCCTTSCHHHHHHHHHHSCSSGGGSBTTBS
T ss_pred             HHcCCCCCchhhhhh-hhHHHHHHHhCCCCCCCCCHHHHHHHHHcC--CCCCCccCCHHHHHHHHHhcccCCCCCcCHHH
Confidence            999988888889999 999999999999999765544444454433  34445678999999999999999     885 


Q ss_pred             HHHcCCCCCCCC
Q 013230          431 EAIFDPFFSDLI  442 (447)
Q Consensus       431 elL~HPff~~~~  442 (447)
                      |+++||||+++.
T Consensus       251 ~l~~hpff~~~~  262 (320)
T d1xjda_         251 DIRQHPLFREIN  262 (320)
T ss_dssp             CGGGSGGGTTCC
T ss_pred             HHHhCchhccCC
Confidence            899999999863

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-43  Score=337.72  Aligned_cols=240  Identities=16%  Similarity=0.159  Sum_probs=191.1

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++.+.||+|+||+||+|++      ||+|++........  ........+.+|+.+|+++++ .|     ||    ||+
T Consensus         6 Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~--~~~~~~~~~~~E~~il~~l~~-~h-----~n----Iv~   73 (273)
T d1xwsa_           6 YQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDW--GELPNGTRVPMEVVLLKKVSS-GF-----SG----VIR   73 (273)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCE--EECTTCCEEEHHHHHHHHHCS-SS-----CS----BCC
T ss_pred             EEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccch--hhhhHHHHHHHHHHHHHHhcc-CC-----CC----ccE
Confidence            59999999999999999974      99999986532111  111112345789999999974 11     55    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      ++++|..                              ++.+|+||||+.+|.++.+++.    +++.+++.++.||+.||
T Consensus        74 ~~~~~~~------------------------------~~~~~lv~e~~~~~~~l~~~~~~~~~l~e~~~~~~~~qi~~al  123 (273)
T d1xwsa_          74 LLDWFER------------------------------PDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAV  123 (273)
T ss_dssp             EEEEEEC------------------------------SSEEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHH
T ss_pred             EEEEEee------------------------------CCeEEEEEEeccCcchHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence            9999643                              5679999999987658888775    99999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---CEEEEecCCCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---DIFFLDLSQDPELFSG  360 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---g~i~~~~~~~pelf~g  360 (447)
                      +|||+ +||+||||||+|||++.+..                   .+||+|||+|+.....   .......|++||++.+
T Consensus       124 ~~lH~-~~iiHrDiKp~NIll~~~~~-------------------~vkl~DFG~a~~~~~~~~~~~~GT~~y~aPE~~~~  183 (273)
T d1xwsa_         124 RHCHN-CGVLHRDIKDENILIDLNRG-------------------ELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRY  183 (273)
T ss_dssp             HHHHH-TTEECSCCSGGGEEEETTTT-------------------EEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHH
T ss_pred             HHHHH-CCCccccCcccceEEecCCC-------------------eEEECccccceecccccccccccCCCcCCHHHHcC
Confidence            99999 99999999999999986642                   7999999999876543   1223456899999987


Q ss_pred             CCCCch-HHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          361 PKGDKQ-FDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       361 ~~~~~~-~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      ..+... .|||+ +|++.+++.+|..||....      .+.  +.....+..+|+++++||++||++|     ||+|+|+
T Consensus       184 ~~~~~~~~DiwS-lGvilyell~g~~Pf~~~~------~i~--~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~  254 (273)
T d1xwsa_         184 HRYHGRSAAVWS-LGILLYDMVCGDIPFEHDE------EII--RGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQN  254 (273)
T ss_dssp             SCBCHHHHHHHH-HHHHHHHHHHSSCSCCSHH------HHH--HCCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CCCCCccccccc-ceeeehhHhhCCCCCCCch------HHh--hcccCCCCCCCHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence            665544 59999 9999999999999997642      222  2233344678999999999999999     9999999


Q ss_pred             CCCCCCCCCC
Q 013230          435 DPFFSDLIVD  444 (447)
Q Consensus       435 HPff~~~~~~  444 (447)
                      ||||+++..+
T Consensus       255 hp~~~~~~~p  264 (273)
T d1xwsa_         255 HPWMQDVLLP  264 (273)
T ss_dssp             SGGGSSCCCH
T ss_pred             CHhhCCCCCC
Confidence            9999987543

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-42  Score=337.31  Aligned_cols=247  Identities=19%  Similarity=0.247  Sum_probs=192.0

Q ss_pred             CcceEEeccccceEEEEece-------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          134 PENIVKVGEGTFGEAFLAGN-------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~-------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      |+++++||+|+||+||+|++       ||+|++.....      .......+.+|+.+|+.|...+|     ||    ||
T Consensus         9 Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~------~~~~~~~~~~E~~~l~~l~~~~H-----pn----Iv   73 (305)
T d1blxa_           9 YECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTG------EEGMPLSTIREVAVLRHLETFEH-----PN----VV   73 (305)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBC------TTSCBCTHHHHHHHHHHHHHTCC-----TT----BC
T ss_pred             EEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhc------cchHHHHHHHHHHHHHHHhhcCC-----CC----cc
Confidence            49999999999999999973       89999875432      12223456789999988864333     66    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      +++++|....                         ......+|++||||.+| ++.....     +++..++.++.||+.
T Consensus        74 ~~~~~~~~~~-------------------------~~~~~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~qi~~  127 (305)
T d1blxa_          74 RLFDVCTVSR-------------------------TDRETKLTLVFEHVDQD-LTTYLDKVPEPGVPTETIKDMMFQLLR  127 (305)
T ss_dssp             CEEEEEEEEE-------------------------CSSEEEEEEEEECCSCB-HHHHHHHSCTTCSCHHHHHHHHHHHHH
T ss_pred             eeeeeecccc-------------------------cccCceEEEEEEeccCC-chhhhhhccCCCCCHHHHHHHHHHHHH
Confidence            9999976422                         11235689999999977 5543332     899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDPEL  357 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~pel  357 (447)
                      ||+|||+ +|||||||||+|||++.++                    .+||+|||+++.....    .......|++||+
T Consensus       128 aL~yLH~-~~ivHrDiKp~NILi~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~gT~~Y~APE~  186 (305)
T d1blxa_         128 GLDFLHS-HRVVHRDLKPQNILVTSSG--------------------QIKLADFGLARIYSFQMALTSVVVTLWYRAPEV  186 (305)
T ss_dssp             HHHHHHH-TTCCCCCCCGGGEEECTTC--------------------CEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHH
T ss_pred             HHHHHHh-CCEEecCCCccEEEEcCCC--------------------CeeecchhhhhhhcccccCCCcccChhhcCcch
Confidence            9999999 9999999999999999987                    7999999999865432    2234566999999


Q ss_pred             CCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh-----ccCC--------------------CCCccc
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL-----KKTF--------------------DRSSKD  412 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~-----~~~~--------------------~~~~~~  412 (447)
                      +.+..++.+.|||+ +|++.+++++|..||........+..++..     ...+                    ......
T Consensus       187 ~~~~~y~~~~DiwS-lG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (305)
T d1blxa_         187 LLQSSYATPVDLWS-VGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDI  265 (305)
T ss_dssp             HTTCCCCTHHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSC
T ss_pred             hcCCCCChhehhhc-hHHHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCchhcccccccchhhhhccccccchhhccccC
Confidence            99988888999999 999999999999999755333333332210     0000                    012357


Q ss_pred             hHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          413 ERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       413 s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                      +++++|||++||++|     ||+|+|+||||+++..
T Consensus       266 s~~~~dli~~mL~~dP~~R~sa~e~L~Hpff~~i~~  301 (305)
T d1blxa_         266 DELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLER  301 (305)
T ss_dssp             CHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTCCC
T ss_pred             CHHHHHHHHHHCcCChhHCcCHHHHhcChhhcCchh
Confidence            899999999999999     9999999999998854

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=8.2e-42  Score=337.13  Aligned_cols=239  Identities=20%  Similarity=0.266  Sum_probs=187.5

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhcc-ccccCCCCCCCcccce
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLN-HLRRNEGDTLNACTTF  205 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~-h~~~~~~~~~n~~~~i  205 (447)
                      +|+++++||+|+||+||+|++      ||+|+++..           ..+.+.+|+.+|+.++ |        ||    |
T Consensus        36 ~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~-----------~~~~~~~Ei~il~~l~~h--------pn----I   92 (328)
T d3bqca1          36 DYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV-----------KKKKIKREIKILENLRGG--------PN----I   92 (328)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSS-----------CHHHHHHHHHHHHHHTTS--------TT----B
T ss_pred             CeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHH-----------HHHHHHHHHHHHHhccCC--------CC----C
Confidence            349999999999999999984      999998632           2356789999999996 5        66    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-CCHHHHHHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-l~~~~~~~i~~Qil~gL~  284 (447)
                      ++++++|...                            ....+|+|||||.+| +|..+.+ +++..++.++.||+.||+
T Consensus        93 v~~~~~~~~~----------------------------~~~~~~~v~e~~~~~-~L~~~~~~l~e~~i~~i~~qil~aL~  143 (328)
T d3bqca1          93 ITLADIVKDP----------------------------VSRTPALVFEHVNNT-DFKQLYQTLTDYDIRFYMYEILKALD  143 (328)
T ss_dssp             CCEEEEEECT----------------------------TTCSEEEEEECCCSC-BGGGTTTSCCHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEEec----------------------------CCCceeEEEeecCCC-cHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9999996531                            245699999999988 9988876 999999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDPELFSG  360 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~pelf~g  360 (447)
                      |||+ +||+||||||+|||++.++.                   .+||+|||+|+.....    ..+....|++||.+.+
T Consensus       144 ~LH~-~gIvHrDiKp~NILi~~~~~-------------------~vkl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~  203 (328)
T d3bqca1         144 YCHS-MGIMHRDVKPHNVMIDHEHR-------------------KLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVD  203 (328)
T ss_dssp             HHHH-TTEECCCCSGGGEEEETTTT-------------------EEEECCGGGCEECCTTCCCCSCCSCGGGCCHHHHTT
T ss_pred             HHhh-cccccccccccceEEcCCCC-------------------eeeecccccceeccCCCcccccccCccccCcccccC
Confidence            9999 99999999999999997752                   6999999999876543    2233456899999877


Q ss_pred             CC-CCchHHHHHhhccCCcccccCCCCCChhH--H--HHHHHHHH--------hhcc-----------------------
Q 013230          361 PK-GDKQFDTYRKMKKVTEDQWEGSFPKTNVL--W--LVYLVDML--------LLKK-----------------------  404 (447)
Q Consensus       361 ~~-~~~~~di~s~lg~~~~~~~~~~~p~~~~~--~--~~~~~~~l--------~~~~-----------------------  404 (447)
                      .. ++...|||+ +|++.++++.+..|+....  .  .......+        ....                       
T Consensus       204 ~~~~~~~~Diws-lG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (328)
T d3bqca1         204 YQMYDYSLDMWS-LGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERF  282 (328)
T ss_dssp             CCCCCTHHHHHH-HHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGTCCCCCCCCGGGG
T ss_pred             CCCCCcccchhh-hhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcccccCcccchhcccccccchhhc
Confidence            55 466679999 9999999999988875321  0  00011100        0000                       


Q ss_pred             -CCCCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          405 -TFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       405 -~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                       ..+....++++++|||++||++|     ||+|||+||||+++..+
T Consensus       283 ~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~Hp~F~~v~~~  328 (328)
T d3bqca1         283 VHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKD  328 (328)
T ss_dssp             CCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTSCCC
T ss_pred             ccccccccCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCCCCCC
Confidence             00012346899999999999999     99999999999987653

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-42  Score=340.41  Aligned_cols=236  Identities=18%  Similarity=0.202  Sum_probs=185.7

Q ss_pred             CcceE-EeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCcccce
Q 013230          134 PENIV-KVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNACTTF  205 (447)
Q Consensus       134 ~~~~~-~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~~~i  205 (447)
                      |+++. .||+|+||+||+|++      ||||++...             ..+.+|+.++.++ +|        ||    |
T Consensus        13 y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~-------------~~~~~E~~~~~~~~~h--------pn----I   67 (335)
T d2ozaa1          13 YKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-------------PKARREVELHWRASQC--------PH----I   67 (335)
T ss_dssp             EEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS-------------HHHHHHHHHHHHHTTS--------TT----B
T ss_pred             EEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCc-------------HHHHHHHHHHHHhcCC--------CC----C
Confidence            38876 599999999999974      999998632             4568899987665 56        77    9


Q ss_pred             eeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHH
Q 013230          206 VEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQV  279 (447)
Q Consensus       206 v~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qi  279 (447)
                      |+++++|....                          ..++.+|||||||.|| +|.+++.      +++.+++.++.||
T Consensus        68 v~l~~~~~~~~--------------------------~~~~~~~ivmEy~~gg-~L~~~i~~~~~~~l~e~~~~~i~~qi  120 (335)
T d2ozaa1          68 VRIVDVYENLY--------------------------AGRKCLLIVMECLDGG-ELFSRIQDRGDQAFTEREASEIMKSI  120 (335)
T ss_dssp             CCEEEEEEEEE--------------------------TTEEEEEEEEECCCSE-EHHHHHHSCSCCCEEHHHHHHHHHHH
T ss_pred             CeEEEEEeecc--------------------------cCCCEEEEEEECCCCC-cHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            99999975311                          1135689999999998 9999884      8999999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDP  355 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~p  355 (447)
                      +.||+|||+ +||+||||||+|||++.+..                 ...+||+|||+|+......    ......|++|
T Consensus       121 ~~al~ylH~-~~iiHRDiKp~NIll~~~~~-----------------~~~~Kl~DFG~a~~~~~~~~~~~~~gt~~y~aP  182 (335)
T d2ozaa1         121 GEAIQYLHS-INIAHRDVKPENLLYTSKRP-----------------NAILKLTDFGFAKETTSHNSLTTPCYTPYYVAP  182 (335)
T ss_dssp             HHHHHHHHH-TTEECCCCSGGGEEESCSST-----------------TCCEEECCCTTCEECCCCCCCCCCSCCCSSCCC
T ss_pred             HHHHHHHHH-cCCccccccccccccccccc-----------------cccccccccceeeeccCCCccccccCCcccCCc
Confidence            999999999 99999999999999987531                 0169999999998765442    2345569999


Q ss_pred             CCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHH----HHHHHHhhccCCCCC--ccchHHHHHHHHHhcccc--
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLV----YLVDMLLLKKTFDRS--SKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~----~~~~~l~~~~~~~~~--~~~s~~l~dLl~~mL~~d--  427 (447)
                      |++.+..++.++|||+ +|++.+++.+|..||.......    ....+......++.+  ..+|++++|||++||++|  
T Consensus       183 E~~~~~~y~~~~DiwS-lGvily~lltg~~Pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~  261 (335)
T d2ozaa1         183 EVLGPEKYDKSCDMWS-LGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPT  261 (335)
T ss_dssp             CCCCGGGGSHHHHHHH-HHHHHHHHTTSSCSCEETTCC--------CCCSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTT
T ss_pred             HHHcCCCCCHHHHHHh-hchhHHHHhhCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHHHccCChh
Confidence            9999988888889999 9999999999999996532111    111112112233332  357899999999999999  


Q ss_pred             ---CHHHHHcCCCCCC
Q 013230          428 ---SAKEAIFDPFFSD  440 (447)
Q Consensus       428 ---sa~elL~HPff~~  440 (447)
                         |+.|+|+||||++
T Consensus       262 ~R~s~~eil~hp~~~~  277 (335)
T d2ozaa1         262 QRMTITEFMNHPWIMQ  277 (335)
T ss_dssp             TSCCHHHHHHSHHHHT
T ss_pred             HCcCHHHHHcCHHhhC
Confidence               9999999999964

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=1.4e-41  Score=329.12  Aligned_cols=237  Identities=22%  Similarity=0.291  Sum_probs=187.6

Q ss_pred             CCcceEEeccccceEEEEece-----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN-----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~-----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      .|+++++||+|+||+||+|++     ||+|++....      ..+...+.+.+|+.+|++++|        ||    ||+
T Consensus         3 ~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~------~~~~~~~~~~~E~~il~~l~h--------pn----Iv~   64 (286)
T d1ob3a_           3 KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEK------EDEGIPSTTIREISILKELKH--------SN----IVK   64 (286)
T ss_dssp             SEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSS------GGGCCCHHHHHHHHGGGGCCC--------TT----BCC
T ss_pred             CceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhh------cChHHHHHHHHHHHHHHhCCC--------Cc----EEe
Confidence            349999999999999999984     9999997553      233445788999999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      ++++|..                              ++..|++|||+.+| ++..+..    +++..++.++.||+.||
T Consensus        65 ~~~~~~~------------------------------~~~~~i~~e~~~~~-~~~~~~~~~~~l~~~~~~~i~~qi~~~L  113 (286)
T d1ob3a_          65 LYDVIHT------------------------------KKRLVLVFEHLDQD-LKKLLDVCEGGLESVTAKSFLLQLLNGI  113 (286)
T ss_dssp             EEEEEEC------------------------------SSCEEEEEECCSEE-HHHHHHTSTTCCCHHHHHHHHHHHHHHH
T ss_pred             eeeeccc------------------------------CCceeEEEEeehhh-hHHHHHhhcCCcchhhhHHHHHHHHHHH
Confidence            9999654                              56799999999866 6666655    99999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPELF  358 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pelf  358 (447)
                      +|||+ .|||||||||+|||++.++                    .+||+|||+|.......     .+....|++||.+
T Consensus       114 ~~LH~-~~IvHrDiKp~NIll~~~~--------------------~~kl~DfG~a~~~~~~~~~~~~~~~~~~y~~pE~~  172 (286)
T d1ob3a_         114 AYCHD-RRVLHRDLKPQNLLINREG--------------------ELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVL  172 (286)
T ss_dssp             HHHHH-TTCCCSCCCGGGEEECTTS--------------------CEEECCTTHHHHHCC---------CCCTTCCHHHH
T ss_pred             HHhcc-CcEEecCCCCceeeEcCCC--------------------CEEecccccceecccCccccceecccchhhhHHHH
Confidence            99999 9999999999999999987                    79999999998765432     1233448889988


Q ss_pred             CCCCC-CchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccC------------------C---------CCCc
Q 013230          359 SGPKG-DKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKT------------------F---------DRSS  410 (447)
Q Consensus       359 ~g~~~-~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~------------------~---------~~~~  410 (447)
                      .+... +...|||+ +|++.+++..|..||........+..+......                  +         ....
T Consensus       173 ~~~~~~~~~~Diws-lGv~l~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (286)
T d1ob3a_         173 MGSKKYSTTIDIWS-VGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLK  251 (286)
T ss_dssp             TTCCSCCTHHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCC
T ss_pred             hCCCCCCcceeehh-cCcHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCChhhccchhhhhhcccccccccCcchhhhcc
Confidence            76544 56679999 999999999999998654322222222110000                  0         0123


Q ss_pred             cchHHHHHHHHHhcccc-----CHHHHHcCCCCCC
Q 013230          411 KDERDLRSLKKRLDKYN-----SAKEAIFDPFFSD  440 (447)
Q Consensus       411 ~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~  440 (447)
                      ..+++++|||++||++|     ||+|+|+||||++
T Consensus       252 ~~s~~~~dli~~~L~~dP~~R~s~~ell~Hp~f~~  286 (286)
T d1ob3a_         252 GLDESGIDLLSKMLKLDPNQRITAKQALEHAYFKE  286 (286)
T ss_dssp             SCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGGC
T ss_pred             cCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCc
Confidence            46899999999999999     9999999999985

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-41  Score=325.01  Aligned_cols=241  Identities=25%  Similarity=0.299  Sum_probs=189.8

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .|+++++||+|+||+||+|++      ||||+++...      ........+.+|+.+|+.++|        ||    ||
T Consensus         3 ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~------~~~~~~~~~~~E~~il~~l~h--------~n----iv   64 (292)
T d1unla_           3 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDD------DDEGVPSSALREICLLKELKH--------KN----IV   64 (292)
T ss_dssp             SEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSC------SSTTHHHHHHHHHHHHTTCCC--------TT----BC
T ss_pred             CCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhh------CChHHHHHHHHHHHHHHhcCc--------CC----EE
Confidence            359999999999999999984      9999997553      233456788999999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAG  282 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~g  282 (447)
                      ++++++..                              ...+++||+++.+| +|..++.    +++..++.++.|++.|
T Consensus        65 ~~~~~~~~------------------------------~~~~~iv~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~q~~~a  113 (292)
T d1unla_          65 RLHDVLHS------------------------------DKKLTLVFEFCDQD-LKKYFDSCNGDLDPEIVKSFLFQLLKG  113 (292)
T ss_dssp             CEEEEEEC------------------------------SSEEEEEEECCSEE-HHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred             eecccccc------------------------------ccceeEEeeecccc-ccccccccccccchhHHHHHHHHHHHH
Confidence            99999654                              56799999999876 8877765    8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-----EEEEecCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-----IFFLDLSQDPEL  357 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-----~i~~~~~~~pel  357 (447)
                      |+|||+ +||+||||||+|||++.++                    .+||+|||.|+......     ......+++||+
T Consensus       114 L~~lH~-~~IvHrDiKP~NIli~~~~--------------------~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~pe~  172 (292)
T d1unla_         114 LGFCHS-RNVLHRDLKPQNLLINRNG--------------------ELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDV  172 (292)
T ss_dssp             HHHHHH-TTEECCCCSGGGEEECTTC--------------------CEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHH
T ss_pred             HHHhhc-CCEeeecccCcccccccCC--------------------ceeeeecchhhcccCCCccceeeccccchhhhhH
Confidence            999999 9999999999999999987                    79999999998865431     222344777887


Q ss_pred             CCCCCC-CchHHHHHhhccCCcccccCCCCCChh-HHHHHHHHHHhhc---------------------------cCCCC
Q 013230          358 FSGPKG-DKQFDTYRKMKKVTEDQWEGSFPKTNV-LWLVYLVDMLLLK---------------------------KTFDR  408 (447)
Q Consensus       358 f~g~~~-~~~~di~s~lg~~~~~~~~~~~p~~~~-~~~~~~~~~l~~~---------------------------~~~~~  408 (447)
                      +.+... +.+.|||+ +|++.+++..|..|+... .....+.......                           .....
T Consensus       173 ~~~~~~~~~~~DiwS-lG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (292)
T d1unla_         173 LFGAKLYSTSIDMWS-AGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNV  251 (292)
T ss_dssp             HTTCSCCCTHHHHHH-HHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTT
T ss_pred             hccCCCCCchhhccc-cchHHHHHhhCCCCCCCCCCHHHHHHHHHhhcCCCChhhhhhhhhcccccccccccccchhhhc
Confidence            776553 56679999 999999999998886432 1221111111000                           00011


Q ss_pred             CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          409 SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       409 ~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                      ....+++++|||++||++|     ||+|+|+||||+++..|
T Consensus       252 ~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~Hp~f~~~~~~  292 (292)
T d1unla_         252 VPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFSDFCPP  292 (292)
T ss_dssp             STTCCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGSSCSCC
T ss_pred             cccCCHHHHHHHHHHccCChhHCcCHHHHhcChhhcCCCCC
Confidence            2356899999999999999     99999999999987543

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-41  Score=337.28  Aligned_cols=244  Identities=18%  Similarity=0.220  Sum_probs=185.5

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+++++||+|+||+||+|++      ||||++....      ......+.+.+|+.+|+.++|        ||    ||+
T Consensus        20 Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~------~~~~~~~~~~~Ei~il~~l~h--------pn----iv~   81 (346)
T d1cm8a_          20 YRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPF------QSELFAKRAYRELRLLKHMRH--------EN----VIG   81 (346)
T ss_dssp             EEEEEEC------CEEEEEETTTCCEEEEEECSSTT------SSHHHHHHHHHHHHHHHHCCB--------TT----BCC
T ss_pred             EEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhh------cChHHHHHHHHHHHHHHhcCC--------CC----eeE
Confidence            49999999999999999974      9999987432      233445778999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~  284 (447)
                      ++++|...+.                        ......+|+|||||.  .+|..++.   +++..++.+++||+.||+
T Consensus        82 l~~~~~~~~~------------------------~~~~~~~~lv~e~~~--~~l~~~~~~~~l~~~~~~~~~~qi~~aL~  135 (346)
T d1cm8a_          82 LLDVFTPDET------------------------LDDFTDFYLVMPFMG--TDLGKLMKHEKLGEDRIQFLVYQMLKGLR  135 (346)
T ss_dssp             CSEEECSCSS------------------------TTTCCCCEEEEECCS--EEHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccCcc------------------------ccccceEEEEEeccc--ccHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            9999754331                        122456899999993  48888876   999999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--CEEEEecCCCCCCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--DIFFLDLSQDPELFSGPK  362 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--g~i~~~~~~~pelf~g~~  362 (447)
                      |||+ +|||||||||+|||++.++                    .+||+|||+|+.....  +.+....|++||.+.+..
T Consensus       136 ~LH~-~~IiHrDiKp~NIL~~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~  194 (346)
T d1cm8a_         136 YIHA-AGIIHRDLKPGNLAVNEDC--------------------ELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWM  194 (346)
T ss_dssp             HHHH-TTEECCCCCGGGEEECTTC--------------------CEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTT
T ss_pred             HHHh-CCCcccccCcchhhccccc--------------------ccccccccceeccCCccccccccccccCHHHHcCCC
Confidence            9999 9999999999999999998                    7999999999987654  334455689999887644


Q ss_pred             -CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh-----------------------ccCCC------CCccc
Q 013230          363 -GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL-----------------------KKTFD------RSSKD  412 (447)
Q Consensus       363 -~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~-----------------------~~~~~------~~~~~  412 (447)
                       .....|||+ +|++.++++.|..|+........+......                       .....      .....
T Consensus       195 ~~~~~~DiwS-lGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (346)
T d1cm8a_         195 RYTQTVDIWS-VGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNA  273 (346)
T ss_dssp             CCCTTHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTC
T ss_pred             CCCccchhhc-chHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHhhhcchhhhhhhccCCcccccchHHhccCC
Confidence             456679999 999999999999888653222211111100                       00000      12356


Q ss_pred             hHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          413 ERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       413 s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                      +++++|||++||++|     ||+|+|+||||+++..
T Consensus       274 s~~~~dli~~mL~~dP~~R~ta~eiL~Hp~f~~~~~  309 (346)
T d1cm8a_         274 SPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHD  309 (346)
T ss_dssp             CHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC-
T ss_pred             CHHHHHHHHHHCcCChhHCcCHHHHhcChhhCcCCC
Confidence            899999999999999     9999999999998753

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.2e-41  Score=326.53  Aligned_cols=228  Identities=22%  Similarity=0.239  Sum_probs=189.9

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|++.++||+|+||+||+|++      ||+|+++.+.         ...+.+.+|+.+|++|+|        ||    ||
T Consensus        18 ~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~---------~~~~~~~~E~~il~~l~H--------pn----Iv   76 (287)
T d1opja_          18 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT---------MEVEEFLKEAAVMKEIKH--------PN----LV   76 (287)
T ss_dssp             GEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTC---------SCHHHHHHHHHHHHHCCC--------TT----BC
T ss_pred             HeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCcc---------chHHHHHHHHHHHHhCCC--------CC----Ee
Confidence            348999999999999999973      9999886432         234678999999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVT  280 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil  280 (447)
                      ++++++.                              .++.+|||||||.+| +|.+++.      +++..++.++.||+
T Consensus        77 ~~~~~~~------------------------------~~~~~~iv~E~~~~g-~l~~~l~~~~~~~~~~~~~~~i~~qi~  125 (287)
T d1opja_          77 QLLGVCT------------------------------REPPFYIITEFMTYG-NLLDYLRECNRQEVSAVVLLYMATQIS  125 (287)
T ss_dssp             CEEEEEC------------------------------SSSSCEEEEECCTTC-BHHHHHHHSCTTTSCHHHHHHHHHHHH
T ss_pred             cCCccEe------------------------------eCCeeEEEeecccCc-chHHHhhhccccchHHHHHHHHHHHHH
Confidence            9999853                              256799999999999 8888864      89999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------CEEEEecCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------DIFFLDLSQD  354 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g~i~~~~~~~  354 (447)
                      .||+|||+ +||+||||||+||||+.++                    .+||+|||+|+.....      ++..+..|++
T Consensus       126 ~gL~yLH~-~~iiHrDlKp~NILl~~~~--------------------~~Kl~DFG~a~~~~~~~~~~~~~~~g~~~y~a  184 (287)
T d1opja_         126 SAMEYLEK-KNFIHRDLAARNCLVGENH--------------------LVKVADFGLSRLMTGDTYTAHAGAKFPIKWTA  184 (287)
T ss_dssp             HHHHHHHH-TTCCCSCCSGGGEEECGGG--------------------CEEECCCCCTTTCCSSSSEEETTEEECGGGCC
T ss_pred             HHHHHHHH-CCcccCccccCeEEECCCC--------------------cEEEccccceeecCCCCceeeccccccccccC
Confidence            99999999 9999999999999999987                    7999999999876544      3344556999


Q ss_pred             CCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CH
Q 013230          355 PELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SA  429 (447)
Q Consensus       355 pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa  429 (447)
                      ||.+.+..++.+.|||+ +|++.+++.++..|+........+.+.+......+.+..+++++++||.+||+.|     |+
T Consensus       185 PE~~~~~~~~~k~DiwS-~Gv~l~ell~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~  263 (287)
T d1opja_         185 PESLAYNKFSIKSDVWA-FGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSF  263 (287)
T ss_dssp             HHHHHHCCCSHHHHHHH-HHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             hHHHcCCCCCchhhhhh-HHHHHHHHHhCCCCCCCcchHHHHHHHHhcCCCCCCCccchHHHHHHHHHHcCCCHhHCcCH
Confidence            99998878888889999 9999999998776654433333344444444456667789999999999999999     99


Q ss_pred             HHHHc
Q 013230          430 KEAIF  434 (447)
Q Consensus       430 ~elL~  434 (447)
                      +|+++
T Consensus       264 ~ei~~  268 (287)
T d1opja_         264 AEIHQ  268 (287)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99976

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-41  Score=336.32  Aligned_cols=241  Identities=20%  Similarity=0.194  Sum_probs=183.8

Q ss_pred             CCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      +|+.+++||+|+||+||+|++      ||||++..+..            ...+|+.+|++|+|        +|    ||
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~------------~~~~Ei~il~~l~h--------~n----iv   76 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR------------FKNRELQIMRKLDH--------CN----IV   76 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS------------SCCHHHHHHHHCCC--------TT----BC
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccch------------HHHHHHHHHHhcCC--------CC----CC
Confidence            358999999999999999984      99999875432            12479999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhh---c----CCHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFV---L----LNINEARSLLVQV  279 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i---~----l~~~~~~~i~~Qi  279 (447)
                      +++++|...+.                        ..+...+|||||||.+| .+..+.   .    +++.+++.++.||
T Consensus        77 ~~~~~~~~~~~------------------------~~~~~~~~lv~Ey~~~~-~~~~l~~~~~~~~~l~~~~~~~i~~qi  131 (350)
T d1q5ka_          77 RLRYFFYSSGE------------------------KKDEVYLNLVLDYVPET-VYRVARHYSRAKQTLPVIYVKLYMYQL  131 (350)
T ss_dssp             CEEEEEEEC--------------------------CCSCCEEEEEEECCSEE-HHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             cEEEEEEecCc------------------------cCCceEEEEEEeccCCc-cHHHHHhhhhccCCCCHHHHHHHHHHH
Confidence            99999876442                        11245689999999855 333322   1    8999999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----CEEEEecCCCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----DIFFLDLSQDP  355 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----g~i~~~~~~~p  355 (447)
                      +.||+|||+ +||+||||||+|||++.++.                   .+||+|||+|+.....    ..+....|++|
T Consensus       132 l~aL~yLH~-~~IiHrDiKp~NILl~~~~~-------------------~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aP  191 (350)
T d1q5ka_         132 FRSLAYIHS-FGICHRDIKPQNLLLDPDTA-------------------VLKLCDFGSAKQLVRGEPNVSYICSRYYRAP  191 (350)
T ss_dssp             HHHHHHHHT-TTEECCCCCGGGEEECTTTC-------------------CEEECCCTTCEECCTTSCCCSCCSCTTSCCH
T ss_pred             HHHHHHHHh-cCCcccCCCcceEEEecCCC-------------------ceeEecccchhhccCCcccccccccccccCh
Confidence            999999999 99999999999999998753                   7999999999876443    22334568888


Q ss_pred             CCCCCC-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHh-----------------hccCCCC---------
Q 013230          356 ELFSGP-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLL-----------------LKKTFDR---------  408 (447)
Q Consensus       356 elf~g~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~-----------------~~~~~~~---------  408 (447)
                      |.+.+. .++...|||+ +|++.++++.|..||........+..++.                 ....++.         
T Consensus       192 E~~~~~~~~~~~~DIwS-lG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (350)
T d1q5ka_         192 ELIFGATDYTSSIDVWS-AGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKV  270 (350)
T ss_dssp             HHHTTCSSCCTHHHHHH-HHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC---CCCCCCCCCCCGGGT
T ss_pred             HHhhcccCCCcceeecc-cceEEEehhhCCCCCCCCCHHHHHHHHHHHhCCChHHhhhhhccchhhccccccccCchhhh
Confidence            876654 5667779999 99999999999988865432222222210                 0011111         


Q ss_pred             -CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          409 -SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       409 -~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                       ....+++++|||++||++|     ||.|+|+||||+++..
T Consensus       271 ~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~~  311 (350)
T d1q5ka_         271 FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRD  311 (350)
T ss_dssp             SCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGGC
T ss_pred             cccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccccC
Confidence             1246899999999999999     9999999999987644

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-41  Score=326.15  Aligned_cols=231  Identities=21%  Similarity=0.248  Sum_probs=189.1

Q ss_pred             CCcceEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          133 DPENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      +|+++++||+|+||+||+|+     .||||++....         ...+.+.+|+.+|++++|        ||    ||+
T Consensus        14 ~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~---------~~~~~~~~E~~~l~~l~H--------pn----Iv~   72 (272)
T d1qpca_          14 TLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS---------MSPDAFLAEANLMKQLQH--------QR----LVR   72 (272)
T ss_dssp             GEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS---------SCHHHHHHHHHHHHHCCC--------TT----BCC
T ss_pred             HeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCc---------CCHHHHHHHHHHHHhCCC--------CC----EeE
Confidence            34999999999999999998     39999986432         234678999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +++++.                               ++.+|||||||.+| +|.+++.      +++.++..++.||+.
T Consensus        73 ~~g~~~-------------------------------~~~~~iv~Ey~~~g-~L~~~~~~~~~~~l~~~~~~~i~~qi~~  120 (272)
T d1qpca_          73 LYAVVT-------------------------------QEPIYIITEYMENG-SLVDFLKTPSGIKLTINKLLDMAAQIAE  120 (272)
T ss_dssp             EEEEEC-------------------------------SSSCEEEEECCTTC-BHHHHTTSHHHHTCCHHHHHHHHHHHHH
T ss_pred             EEeeec-------------------------------cCCeEEEEEeCCCC-cHHHHHhhcCCCCCCHHHHHHHHHHHHH
Confidence            999732                               34589999999999 9988765      899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------EEEEecCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------IFFLDLSQDP  355 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------~i~~~~~~~p  355 (447)
                      ||+|||+ ++|+||||||+||||+.++                    .+||+|||+|+......      ......|++|
T Consensus       121 gl~~lH~-~~ivHrDiKp~NIll~~~~--------------------~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~AP  179 (272)
T d1qpca_         121 GMAFIEE-RNYIHRDLRAANILVSDTL--------------------SCKIADFGLARLIEDNEYTAREGAKFPIKWTAP  179 (272)
T ss_dssp             HHHHHHH-TTEECSCCSGGGEEECTTS--------------------CEEECCCTTCEECSSSCEECCTTCCCCTTTSCH
T ss_pred             HHHHHHh-CCcccCccchhheeeeccc--------------------ceeeccccceEEccCCccccccccCCcccccCh
Confidence            9999999 9999999999999999987                    79999999999865442      2233458999


Q ss_pred             CCCCCCCCCchHHHHHhhccCCcccccCCCCCChh-HHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CH
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNV-LWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SA  429 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~-~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa  429 (447)
                      |++.+..++.+.|||+ +|++.++++++..|+... ..... ...+......+.+..+++++++|+++||+.|     |+
T Consensus       180 E~~~~~~~~~~sDvwS-~Gvvl~ellt~~~~~~~~~~~~~~-~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~Rpt~  257 (272)
T d1qpca_         180 EAINYGTFTIKSDVWS-FGILLTEIVTHGRIPYPGMTNPEV-IQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTF  257 (272)
T ss_dssp             HHHHHCEECHHHHHHH-HHHHHHHHHTTTCCSSTTCCHHHH-HHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             HHHhCCCCCchhhhhh-hHHHHHHHHhCCCCCCCCCCHHHH-HHHHHhcCCCCCcccChHHHHHHHHHHcCCCHhHCcCH
Confidence            9998777777889999 999999999866544333 23222 2333333455566788999999999999999     99


Q ss_pred             HHHHc--CCCCC
Q 013230          430 KEAIF--DPFFS  439 (447)
Q Consensus       430 ~elL~--HPff~  439 (447)
                      +|+++  |+||+
T Consensus       258 ~ei~~~L~~~ft  269 (272)
T d1qpca_         258 DYLRSVLEDFFT  269 (272)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhh
Confidence            99998  88885

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.3e-41  Score=328.02  Aligned_cols=254  Identities=22%  Similarity=0.260  Sum_probs=187.7

Q ss_pred             hhhhccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCC
Q 013230          126 DLFSKYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTL  199 (447)
Q Consensus       126 ~~~~~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~  199 (447)
                      +.+++|   +++++||+|+||+||+|++      ||||++....      ..+....++.+|+.+|++++|        |
T Consensus         7 ~~~~rY---~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~------~~~~~~~~~~~E~~il~~l~h--------~   69 (318)
T d3blha1           7 DEVSKY---EKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMEN------EKEGFPITALREIKILQLLKH--------E   69 (318)
T ss_dssp             CBGGGE---EEEEEEEECSSSEEEEEEETTTCCEEEEEEC----------CTTSSCHHHHHHHHHHHHCCC--------T
T ss_pred             CccCCE---EEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhh------cchHHHHHHHHHHHHHHHhcC--------C
Confidence            335677   9999999999999999974      9999987553      233455778999999999998        8


Q ss_pred             CcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHH
Q 013230          200 NACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSL  275 (447)
Q Consensus       200 n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i  275 (447)
                      |    |+++++++......                      ....++.+|+|||||.+| ++..+..    +++..++.+
T Consensus        70 n----ii~~~~~~~~~~~~----------------------~~~~~~~~~iv~e~~~~~-~~~~~~~~~~~~~~~~~~~i  122 (318)
T d3blha1          70 N----VVNLIEICRTKASP----------------------YNRCKGSIYLVFDFCEHD-LAGLLSNVLVKFTLSEIKRV  122 (318)
T ss_dssp             T----BCCEEEEEEC--------------------------------CEEEEEECCCEE-HHHHHTCTTCCCCHHHHHHH
T ss_pred             C----ccceEeeeeccccc----------------------ccccCceEEEEEeccCCC-ccchhhhcccccccHHHHHH
Confidence            8    99999987542210                      012245699999999865 5554433    899999999


Q ss_pred             HHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---------CE
Q 013230          276 LVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---------DI  346 (447)
Q Consensus       276 ~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---------g~  346 (447)
                      ++||+.||.|||+ +||+||||||+|||++.++                    .+||+|||+|+.....         +.
T Consensus       123 ~~qil~~l~~lH~-~~ivHrDlKp~NILl~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~  181 (318)
T d3blha1         123 MQMLLNGLYYIHR-NKILHRDMKAANVLITRDG--------------------VLKLADFGLARAFSLAKNSQPNRYTNR  181 (318)
T ss_dssp             HHHHHHHHHHHHH-TTEECCCCCGGGEEECTTS--------------------CEEECCCTTCEECCC-----CCCCCSC
T ss_pred             HHHHHHHHHHhcc-CCEEecCcCchheeecCCC--------------------cEEeeecceeeecccccccccccccce
Confidence            9999999999999 9999999999999999987                    7999999999765432         12


Q ss_pred             EEEecCCCCCCCCCC-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCC-----------------
Q 013230          347 FFLDLSQDPELFSGP-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDR-----------------  408 (447)
Q Consensus       347 i~~~~~~~pelf~g~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~-----------------  408 (447)
                      +....|++||++.+. .++...|||+ +|++.+++..|..||........+..+......++.                 
T Consensus       182 ~gT~~Y~aPE~~~~~~~~~~k~DiwS-lGvil~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (318)
T d3blha1         182 VVTLWYRPPELLLGERDYGPPIDLWG-AGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLEL  260 (318)
T ss_dssp             CSCGGGCCHHHHTTCSSCCTHHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTCCCC-------C
T ss_pred             ecCHHHhhHHHHcCCCCCCcHHHccc-CCceeeeHhhCCCCCCCCCHHHHHHHHHHhcCCCChhhccccchhhhhhhhcc
Confidence            233458999998765 4566779999 999999999999998643222222221110011100                 


Q ss_pred             -------------CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCCC
Q 013230          409 -------------SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVDR  445 (447)
Q Consensus       409 -------------~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~~  445 (447)
                                   ....+++++|||++||++|     ||+|+|+||||+..+.|.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~Hpff~~~p~p~  315 (318)
T d3blha1         261 VKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPMPS  315 (318)
T ss_dssp             CSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGSSSSCCC
T ss_pred             cccccccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHcChhhccCCCCC
Confidence                         0013778999999999999     999999999999765554

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-41  Score=330.24  Aligned_cols=231  Identities=19%  Similarity=0.205  Sum_probs=189.6

Q ss_pred             CCcceEEeccccceEEEEece-----------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCC
Q 013230          133 DPENIVKVGEGTFGEAFLAGN-----------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLN  200 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~-----------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n  200 (447)
                      +|+++++||+|+||+||+|+.           ||+|++....       .......+.+|+.+|+++ +|        ||
T Consensus        38 ~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~~~E~~~l~~l~~H--------pn  102 (325)
T d1rjba_          38 NLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA-------DSSEREALMSELKMMTQLGSH--------EN  102 (325)
T ss_dssp             GEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC-------------CHHHHHHHHHHHHHCCC--------TT
T ss_pred             HeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEecccc-------CHHHHHHHHHHHHHHHHhcCC--------Cc
Confidence            359999999999999999962           7888776432       223446789999999998 66        77


Q ss_pred             cccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------------
Q 013230          201 ACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------------  266 (447)
Q Consensus       201 ~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------------  266 (447)
                          ||++++++.                              ..+.+|+|||||+|| +|.+++.              
T Consensus       103 ----Iv~l~~~~~------------------------------~~~~~~lv~Ey~~~g-~L~~~l~~~~~~~~~~~~~~~  147 (325)
T d1rjba_         103 ----IVNLLGACT------------------------------LSGPIYLIFEYCCYG-DLLNYLRSKREKFSEDEIEYE  147 (325)
T ss_dssp             ----BCCEEEEEC------------------------------SSSSCEEEEECCTTC-BHHHHHHTTTTCC--------
T ss_pred             ----EeEEEEEEe------------------------------eCCeEEEEEEcCCCC-cHHHHHHhccCCCcchhhhhc
Confidence                999999953                              356799999999999 9998873              


Q ss_pred             -------------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEe
Q 013230          267 -------------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTII  333 (447)
Q Consensus       267 -------------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~  333 (447)
                                   +++..++.++.||+.||+|||+ +|||||||||+|||++.++                    .+||+
T Consensus       148 ~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~-~~IiHRDlKp~Nill~~~~--------------------~~Kl~  206 (325)
T d1rjba_         148 NQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF-KSCVHRDLAARNVLVTHGK--------------------VVKIC  206 (325)
T ss_dssp             -------------CCHHHHHHHHHHHHHHHHHHHH-TTEEETTCSGGGEEEETTT--------------------EEEEC
T ss_pred             cccccccccccCCCCHHHHHHHHHHHHHHHHHHHh-CCeeeccCchhccccccCC--------------------eEEEe
Confidence                         6889999999999999999999 9999999999999999987                    89999


Q ss_pred             eccceeecCCC-------CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccC
Q 013230          334 DFTLSRINTGE-------DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKT  405 (447)
Q Consensus       334 DFGla~~~~~~-------g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~  405 (447)
                      |||+|+.....       +......|++||.+.+..++.+.|||+ +|++.+++++ |..||........+.+.+.....
T Consensus       207 DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS-~Gvil~emlt~g~~Pf~~~~~~~~~~~~~~~~~~  285 (325)
T d1rjba_         207 DFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWS-YGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFK  285 (325)
T ss_dssp             CCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHH-HHHHHHHHTTTSCCSSTTCCCSHHHHHHHHTTCC
T ss_pred             eccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccc-hhHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCC
Confidence            99999875433       333455699999998878888889999 9999999997 78888654333444555554556


Q ss_pred             CCCCccchHHHHHHHHHhcccc-----CHHHHHcC
Q 013230          406 FDRSSKDERDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       406 ~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      ++.+...++++++||.+||+.|     |++|+++|
T Consensus       286 ~~~p~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~  320 (325)
T d1rjba_         286 MDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSF  320 (325)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            6667789999999999999999     99999876

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-40  Score=319.49  Aligned_cols=228  Identities=18%  Similarity=0.241  Sum_probs=180.9

Q ss_pred             CCcceEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          133 DPENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      +|+++++||+|+||+||+|+     .||||++....         ...+.+.+|+.++++++|        ||    ||+
T Consensus         6 ~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~---------~~~~~~~~E~~~l~~l~H--------pn----Iv~   64 (263)
T d1sm2a_           6 ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA---------MSEEDFIEEAEVMMKLSH--------PK----LVQ   64 (263)
T ss_dssp             CEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSS---------SCHHHHHHHHHHHHHCCC--------TT----BCC
T ss_pred             HcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCc---------CcHHHHHHHHHHHHhcCC--------CC----ccc
Confidence            46999999999999999997     39999986432         233678999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++..                              ++.+|+|||||.+| +|.+++.     +++..+..++.||+.|
T Consensus        65 ~~g~~~~------------------------------~~~~~lv~E~~~~g-~L~~~l~~~~~~~~~~~~~~i~~qia~g  113 (263)
T d1sm2a_          65 LYGVCLE------------------------------QAPICLVFEFMEHG-CLSDYLRTQRGLFAAETLLGMCLDVCEG  113 (263)
T ss_dssp             EEEEECS------------------------------SSSCEEEEECCTTC-BHHHHHHTTTTCCCHHHHHHHHHHHHHH
T ss_pred             ccceecc------------------------------CCceEEEEEecCCC-cHHHHhhccccCCCHHHHHHHHHHHHHH
Confidence            9999532                              56799999999998 9999875     8899999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------CEEEEecCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------DIFFLDLSQDPE  356 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g~i~~~~~~~pe  356 (447)
                      |+|||+ ++|+||||||+|||++.++                    .+||+|||+|+.....      +......|++||
T Consensus       114 l~~lH~-~~iiHrDlKp~Nill~~~~--------------------~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE  172 (263)
T d1sm2a_         114 MAYLEE-ACVIHRDLAARNCLVGENQ--------------------VIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPE  172 (263)
T ss_dssp             HHHHHH-TTCCCTTCSGGGEEECGGG--------------------CEEECSCC------------------CTTSCCHH
T ss_pred             HHhhhc-cceeecccchhheeecCCC--------------------CeEecccchheeccCCCceeecceecCcccCChH
Confidence            999999 9999999999999999987                    7999999999876443      223345599999


Q ss_pred             CCCCCCCCchHHHHHhhccCCcccccCC-CCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          357 LFSGPKGDKQFDTYRKMKKVTEDQWEGS-FPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       357 lf~g~~~~~~~di~s~lg~~~~~~~~~~-~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      ++.+..++.+.|||+ +|++.++++++. .|+...........+ ......+.+...++++.+|+.+||+.|     |++
T Consensus       173 ~l~~~~~~~k~DVwS-~Gvil~el~t~~~~~~~~~~~~~~~~~i-~~~~~~~~p~~~~~~l~~li~~cl~~~p~~Rps~~  250 (263)
T d1sm2a_         173 VFSFSRYSSKSDVWS-FGVLMWEVFSEGKIPYENRSNSEVVEDI-STGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFS  250 (263)
T ss_dssp             HHTTCCCCHHHHHHH-HHHHHHHHHTTSCCTTCSCCHHHHHHHH-HHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HhcCCCCCchhhhcc-hHHHHHHHHHCCCCCCCCCCHHHHHHHH-HhcCCCCCccccCHHHHHHHHHHccCCHhHCcCHH
Confidence            999988888889999 999999999854 444443333333333 223445556678999999999999999     999


Q ss_pred             HHHcC
Q 013230          431 EAIFD  435 (447)
Q Consensus       431 elL~H  435 (447)
                      |+++|
T Consensus       251 ~il~~  255 (263)
T d1sm2a_         251 RLLRQ  255 (263)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99986

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-41  Score=330.59  Aligned_cols=239  Identities=20%  Similarity=0.194  Sum_probs=190.3

Q ss_pred             CcceEEeccccceEEEEec---------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          134 PENIVKVGEGTFGEAFLAG---------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~---------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      |+++++||+|+||+||+|+         .||+|++......    ......+.+.+|+.+|++++|.       ||    
T Consensus        26 y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~----~~~~~~~~~~~E~~il~~l~h~-------pn----   90 (322)
T d1vzoa_          26 FELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIV----QKAKTTEHTRTERQVLEHIRQS-------PF----   90 (322)
T ss_dssp             EEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEE----EEESSGGGCCCHHHHHHHHHTC-------TT----
T ss_pred             eEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhc----cchHHHHHHHHHHHHHHhccCC-------Ce----
Confidence            4999999999999999995         2999998754221    1222345678999999999881       34    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVT  280 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil  280 (447)
                      |+++++++..                              ...+|++|||+.+| +|.+++.    +++..++.++.||+
T Consensus        91 Iv~~~~~~~~------------------------------~~~~~~v~e~~~~~-~L~~~i~~~~~~~e~~~~~~~~Qi~  139 (322)
T d1vzoa_          91 LVTLHYAFQT------------------------------ETKLHLILDYINGG-ELFTHLSQRERFTEHEVQIYVGEIV  139 (322)
T ss_dssp             BCCEEEEEEE------------------------------TTEEEEEECCCCSC-BHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             EEEeeeeecc------------------------------CCceeeeeeccccc-HHHHHHHhcccccHHHHHHHHHHHH
Confidence            9999999654                              56799999999988 9999886    89999999999999


Q ss_pred             HHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------CEEEEecCCC
Q 013230          281 AGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------DIFFLDLSQD  354 (447)
Q Consensus       281 ~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g~i~~~~~~~  354 (447)
                      .||+|||+ +||+||||||+|||++.++                    .+||+|||+|+.....      .......+++
T Consensus       140 ~al~~lH~-~~ivHrDiKp~Nill~~~~--------------------~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~  198 (322)
T d1vzoa_         140 LALEHLHK-LGIIYRDIKLENILLDSNG--------------------HVVLTDFGLSKEFVADETERAYDFCGTIEYMA  198 (322)
T ss_dssp             HHHHHHHH-TTCCCCCCCGGGEEECTTS--------------------CEEESCSSEEEECCGGGGGGGCGGGSCCTTCC
T ss_pred             HHHHHhhc-CCEEeccCCccceeecCCC--------------------CEEEeeccchhhhcccccccccccccccccch
Confidence            99999999 9999999999999999987                    7999999999875332      1223445788


Q ss_pred             CCCCCCCC--CCchHHHHHhhccCCcccccCCCCCChh----HHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-
Q 013230          355 PELFSGPK--GDKQFDTYRKMKKVTEDQWEGSFPKTNV----LWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-  427 (447)
Q Consensus       355 pelf~g~~--~~~~~di~s~lg~~~~~~~~~~~p~~~~----~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-  427 (447)
                      ||.+.+..  .+.+.|||+ +|++.+++++|..||...    ..........  ....+.+...++++++||++||.+| 
T Consensus       199 pe~~~~~~~~~~~ksDIWS-lG~iLyelltG~~PF~~~~~~~~~~~i~~~~~--~~~~~~~~~~s~~~~~li~~~l~~dP  275 (322)
T d1vzoa_         199 PDIVRGGDSGHDKAVDWWS-LGVLMYELLTGASPFTVDGEKNSQAEISRRIL--KSEPPYPQEMSALAKDLIQRLLMKDP  275 (322)
T ss_dssp             HHHHTTCC---CTHHHHHH-HHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHH--HCCCCCCTTSCHHHHHHHHHHTCSSG
T ss_pred             hHHhhcCCcCCCchhhhHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcc--cCCCCCcccCCHHHHHHHHHHcccCH
Confidence            88887643  345679999 999999999999998543    1222222222  2344455679999999999999999 


Q ss_pred             ---------CHHHHHcCCCCCCCC
Q 013230          428 ---------SAKEAIFDPFFSDLI  442 (447)
Q Consensus       428 ---------sa~elL~HPff~~~~  442 (447)
                               ||+|+|+||||+++.
T Consensus       276 ~~R~s~~~~t~~eil~Hpff~~i~  299 (322)
T d1vzoa_         276 KKRLGCGPRDADEIKEHLFFQKIN  299 (322)
T ss_dssp             GGSTTSSTTTHHHHHTSGGGTTCC
T ss_pred             HHcCCCCcccHHHHHcCHhhcCCC
Confidence                     489999999999864

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-40  Score=321.20  Aligned_cols=231  Identities=18%  Similarity=0.184  Sum_probs=183.1

Q ss_pred             CCcceEEeccccceEEEEec---eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeee
Q 013230          133 DPENIVKVGEGTFGEAFLAG---NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMF  209 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~---~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~  209 (447)
                      +|++.++||+|+||+||+|+   .||||++....      ......+.+.+|+.+|++++|        ||    ||+++
T Consensus         9 ~~~~~~~lG~G~fg~Vy~~~~~~~vAvK~~~~~~------~~~~~~~~~~~E~~~l~~l~H--------pn----Iv~~~   70 (276)
T d1uwha_           9 QITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTA------PTPQQLQAFKNEVGVLRKTRH--------VN----ILLFM   70 (276)
T ss_dssp             CCCCCSEEEECSSCEEEEEESSSEEEEEECCCSS------CCTTHHHHHHHHHHHHTTCCC--------TT----BCCEE
T ss_pred             cEEEEEEEeeCCCcEEEEEEECCEEEEEEEEccc------CCHHHHHHHHHHHHHHHhCCC--------CC----Eeeee
Confidence            45999999999999999998   59999987543      233345788999999999998        88    99999


Q ss_pred             eEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHHHH
Q 013230          210 EIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       210 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~gL~  284 (447)
                      ++..                               ++.+|||||||+|| +|.+++.     +++..+..++.||+.||+
T Consensus        71 ~~~~-------------------------------~~~~~lv~Ey~~~g-~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~  118 (276)
T d1uwha_          71 GYST-------------------------------APQLAIVTQWCEGS-SLYHHLHIIETKFEMIKLIDIARQTAQGMD  118 (276)
T ss_dssp             EEEC-------------------------------SSSCEEEEECCCEE-EHHHHHHTSCCCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEe-------------------------------ccEEEEEEecCCCC-CHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Confidence            8731                               34589999999988 9999884     899999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC-------CEEEEecCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE-------DIFFLDLSQDPEL  357 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~-------g~i~~~~~~~pel  357 (447)
                      |||+ +|||||||||+|||++.++                    .+||+|||+|+.....       .......|++||+
T Consensus       119 yLH~-~~ivHrDlKp~NiLl~~~~--------------------~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~  177 (276)
T d1uwha_         119 YLHA-KSIIHRDLKSNNIFLHEDL--------------------TVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEV  177 (276)
T ss_dssp             HHHH-TTCCCSCCCGGGEEEETTS--------------------SEEECCCCCSCC------------CCCCGGGCCHHH
T ss_pred             HHhc-CCEeccccCHHHEEEcCCC--------------------CEEEccccceeeccccCCcccccccccCcccCCHHH
Confidence            9999 9999999999999999987                    7999999999875432       1122345999999


Q ss_pred             CCCCC---CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCC----CCccchHHHHHHHHHhcccc---
Q 013230          358 FSGPK---GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFD----RSSKDERDLRSLKKRLDKYN---  427 (447)
Q Consensus       358 f~g~~---~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~----~~~~~s~~l~dLl~~mL~~d---  427 (447)
                      +.+..   ++.+.|||+ +|++.+++++|..||.+......+...+......|    .+..+++++++||.+||..|   
T Consensus       178 l~~~~~~~~~~~sDiwS-~Gv~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dp~~  256 (276)
T d1uwha_         178 IRMQDKNPYSFQSDVYA-FGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDE  256 (276)
T ss_dssp             HTTCSSCCCCHHHHHHH-HHHHHHHHHHSSCTTTTCCCHHHHHHHHHHTSCCCCGGGSCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             HhcccCCCCCchhhhhh-hHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCcchhccccchHHHHHHHHHHcCCCHhH
Confidence            96532   456679999 99999999999999875432222222222221121    24567899999999999999   


Q ss_pred             --CHHHHHcC
Q 013230          428 --SAKEAIFD  435 (447)
Q Consensus       428 --sa~elL~H  435 (447)
                        |++|+++|
T Consensus       257 RPt~~~il~~  266 (276)
T d1uwha_         257 RPLFPQILAS  266 (276)
T ss_dssp             SCCHHHHHHH
T ss_pred             CcCHHHHHHH
Confidence              99999876

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-40  Score=329.33  Aligned_cols=242  Identities=19%  Similarity=0.249  Sum_probs=181.5

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+++++||+|+||+||+|++      ||||++....       .....+.+.+|+.+|++|+|        ||    ||+
T Consensus        10 Y~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~-------~~~~~~~~~~Ei~il~~l~h--------p~----iv~   70 (345)
T d1pmea_          10 YTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFE-------HQTYCQRTLREIKILLRFRH--------EN----IIG   70 (345)
T ss_dssp             EEEEEECC---CCCEEEEEETTTCSEEEEEEECCTT-------CHHHHHHHHHHHHHHHHCCC--------TT----BCC
T ss_pred             eEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhc-------ChHHHHHHHHHHHHHHHcCC--------CC----CCc
Confidence            49999999999999999974      9999987432       23345678999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~  284 (447)
                      +++++....                         ......+|+ |+|+.|| +|.+++.   +++..++.++.||+.||+
T Consensus        71 ~~~~~~~~~-------------------------~~~~~~~~l-~~~~~~g-~L~~~l~~~~l~~~~i~~i~~qil~al~  123 (345)
T d1pmea_          71 INDIIRAPT-------------------------IEQMKDVYL-VTHLMGA-DLYKLLKTQHLSNDHICYFLYQILRGLK  123 (345)
T ss_dssp             CCEEECCSS-------------------------TTTCCCEEE-EEECCCE-EHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeecc-------------------------ccccceEEE-EEeecCC-chhhhhhcCCCCHHHHHHHHHHHHHHHH
Confidence            999864311                         111233455 4556677 9999986   999999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--------CEEEEecCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--------DIFFLDLSQDPE  356 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--------g~i~~~~~~~pe  356 (447)
                      |||+ +|||||||||+|||++.++                    .+||+|||+|+.....        ..+....|++||
T Consensus       124 yLH~-~~iiHRDIKp~NILl~~~~--------------------~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE  182 (345)
T d1pmea_         124 YIHS-ANVLHRDLKPSNLLLNTTC--------------------DLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPE  182 (345)
T ss_dssp             HHHH-TTEECCCCCGGGEEECTTC--------------------CEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGG
T ss_pred             HHHH-CCCcCCCCCcceEEECCCC--------------------CEEEcccCceeeccCCCccceeeccccccceechHH
Confidence            9999 9999999999999999887                    7999999999865332        223445689999


Q ss_pred             CCCCC-CCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhh--c------------------cCCCC-------
Q 013230          357 LFSGP-KGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLL--K------------------KTFDR-------  408 (447)
Q Consensus       357 lf~g~-~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~--~------------------~~~~~-------  408 (447)
                      ++... .+....|||+ +|++.++++.|..||...............  .                  ...+.       
T Consensus       183 ~l~~~~~~~~~~DiwS-lG~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (345)
T d1pmea_         183 IMLNSKGYTKSIDIWS-VGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWN  261 (345)
T ss_dssp             GTTTBCSCSTHHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHH
T ss_pred             HhhcCCCCCchhhhhc-cCceehHHhhCCCCCCCCCHHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCCccCCCCHH
Confidence            88544 4456669999 999999999999888643221111111000  0                  00000       


Q ss_pred             --CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCC
Q 013230          409 --SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIV  443 (447)
Q Consensus       409 --~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~  443 (447)
                        ...++++++|||.+||++|     ||+|+|+||||+....
T Consensus       262 ~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~hpf~~~~~~  303 (345)
T d1pmea_         262 RLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYD  303 (345)
T ss_dssp             HHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTTCC
T ss_pred             HhCCCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccCCC
Confidence              2346789999999999999     9999999999996654

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-40  Score=331.41  Aligned_cols=245  Identities=18%  Similarity=0.217  Sum_probs=185.3

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+++++||+|+||+||+|++      ||||++....      ......+.+.+|+.+|+.|+|        ||    ||+
T Consensus        20 Y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~------~~~~~~~~~~~Ei~il~~l~h--------~~----iv~   81 (348)
T d2gfsa1          20 YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF------QSIIHAKRTYRELRLLKHMKH--------EN----VIG   81 (348)
T ss_dssp             EEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTT------SSHHHHHHHHHHHHHHHHCCC--------TT----BCC
T ss_pred             eEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchh------cChHHHHHHHHHHHHHHhcCC--------CC----eee
Confidence            49999999999999999974      9999987542      222334678999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~  284 (447)
                      ++++|...+.                         ..+...+++|+|+.|| +|.+++.   +++..++.++.||+.||+
T Consensus        82 ~~~~~~~~~~-------------------------~~~~~~~~i~~~~~gg-~L~~~~~~~~l~e~~~~~i~~qil~aL~  135 (348)
T d2gfsa1          82 LLDVFTPARS-------------------------LEEFNDVYLVTHLMGA-DLNNIVKCQKLTDDHVQFLIYQILRGLK  135 (348)
T ss_dssp             CSEEECSCSS-------------------------TTTCCCCEEEEECCSE-EHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeeccc-------------------------cccCceEEEEEeecCC-chhhhcccccccHHHHHHHHHHHHHHHH
Confidence            9998643221                         1133455667777777 9999987   999999999999999999


Q ss_pred             HHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--CEEEEecCCCCCCCCCCC
Q 013230          285 VAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--DIFFLDLSQDPELFSGPK  362 (447)
Q Consensus       285 ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--g~i~~~~~~~pelf~g~~  362 (447)
                      |||+ +||+||||||+|||++.++                    .+|++|||+|......  +......|++||.+.+..
T Consensus       136 ~LH~-~giiHrDiKp~NILi~~~~--------------------~~kl~dfg~a~~~~~~~~~~~g~~~y~apE~~~~~~  194 (348)
T d2gfsa1         136 YIHS-ADIIHRDLKPSNLAVNEDC--------------------ELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWM  194 (348)
T ss_dssp             HHHH-TTCCCCCCCGGGEEECTTC--------------------CEEECCC----CCTGGGSSSCHHHHTSCHHHHTTCS
T ss_pred             HHHh-CCCcccccCCccccccccc--------------------cccccccchhcccCcccccccccccccCchhhcCCc
Confidence            9999 9999999999999999998                    7999999999776443  223345588999877755


Q ss_pred             C-CchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhcc-----------------------CCCC------Cccc
Q 013230          363 G-DKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKK-----------------------TFDR------SSKD  412 (447)
Q Consensus       363 ~-~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~-----------------------~~~~------~~~~  412 (447)
                      . +...|||+ +|++.++++.|..||...........++....                       ..+.      ....
T Consensus       195 ~~~~~~DiwS-lGv~l~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (348)
T d2gfsa1         195 HYNQTVDIWS-VGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGA  273 (348)
T ss_dssp             CCCTTHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTTSCCCCCCCHHHHSTTC
T ss_pred             cCCcccchhh-hhHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhccchhhhhhhhhcccCCCcchhhhcCCC
Confidence            4 55669999 99999999999988854322222211111000                       0000      1246


Q ss_pred             hHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          413 ERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       413 s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                      +++++|||++||++|     ||+|+|+||||+++..+
T Consensus       274 s~~~~dli~~mL~~dP~~R~ta~elL~Hp~f~~~~~~  310 (348)
T d2gfsa1         274 NPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDP  310 (348)
T ss_dssp             CHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCCT
T ss_pred             CHHHHHHHHHHCcCChhhCcCHHHHhcCHhhCCCCCC
Confidence            899999999999999     99999999999987553

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-40  Score=332.35  Aligned_cols=244  Identities=17%  Similarity=0.215  Sum_probs=183.5

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+++++||+|+||+||+|++      ||||+++....      .+.....+.+|+.+++.++|        ||    ||+
T Consensus        19 Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~------~~~~~~~~~~Ei~il~~l~h--------pn----Iv~   80 (355)
T d2b1pa1          19 YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ------NQTHAKRAYRELVLMKCVNH--------KN----IIS   80 (355)
T ss_dssp             EEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTS------SHHHHHHHHHHHHHHHHCCC--------TT----BCC
T ss_pred             eEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhc------CHHHHHHHHHHHHHHHhcCC--------CC----eeE
Confidence            49999999999999999974      99999985532      23344678999999999988        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-CCHHHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-LNINEARSLLVQVTAGLAVA  286 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-l~~~~~~~i~~Qil~gL~yl  286 (447)
                      ++++|...+.                        ....+.+|+|||||.+| .+..+.. +++..++.+++||+.||+||
T Consensus        81 ~~~~f~~~~~------------------------~~~~~~~~iv~Ey~~~~-l~~~~~~~~~~~~i~~~~~qil~gl~~L  135 (355)
T d2b1pa1          81 LLNVFTPQKT------------------------LEEFQDVYLVMELMDAN-LCQVIQMELDHERMSYLLYQMLCGIKHL  135 (355)
T ss_dssp             CSEEECSCCS------------------------TTTCCEEEEEEECCSEE-HHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecccc------------------------cccCceeEEEEeccchH-HHHhhhcCCCHHHHHHHHHHHHHHHHHh
Confidence            9999765432                        12357799999999855 5554444 99999999999999999999


Q ss_pred             HHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC----EEEEecCCCCCCCCCCC
Q 013230          287 EAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED----IFFLDLSQDPELFSGPK  362 (447)
Q Consensus       287 H~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g----~i~~~~~~~pelf~g~~  362 (447)
                      |+ +||+||||||+|||++.++                    .+||+|||+++......    ......|++||.+.+..
T Consensus       136 H~-~giiHrDlKP~Nil~~~~~--------------------~~kl~df~~~~~~~~~~~~~~~~~t~~y~aPE~l~~~~  194 (355)
T d2b1pa1         136 HS-AGIIHRDLKPSNIVVKSDC--------------------TLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG  194 (355)
T ss_dssp             HH-TTCCCSCCCGGGEEECTTC--------------------CEEECCCCC---------------CCTTCCHHHHTTCC
T ss_pred             hh-cccccccCCcccccccccc--------------------ceeeechhhhhccccccccccccccccccChhhhcCCC
Confidence            99 9999999999999999987                    79999999998765542    23445699999999988


Q ss_pred             CCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHH----------------------hhccC--------------C
Q 013230          363 GDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDML----------------------LLKKT--------------F  406 (447)
Q Consensus       363 ~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l----------------------~~~~~--------------~  406 (447)
                      .+...|||+ +|++.++++.|..||...........++                      .....              .
T Consensus       195 ~~~~~DiwS-lG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (355)
T d2b1pa1         195 YKENVDIWS-VGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLF  273 (355)
T ss_dssp             CCTTHHHHH-HHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCCCCCHHHHSCGGGS
T ss_pred             CCCCccccc-ccchHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHHHhhhhHHHHhhcCccccccccccccccccc
Confidence            888889999 9999999999998885322111111110                      00000              0


Q ss_pred             CC----CccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCC
Q 013230          407 DR----SSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLI  442 (447)
Q Consensus       407 ~~----~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~  442 (447)
                      +.    ....+++++|||++||++|     ||+|+|+||||+...
T Consensus       274 ~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~Hpw~~~~~  318 (355)
T d2b1pa1         274 PADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWY  318 (355)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGGGC
T ss_pred             cccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcCcccCCCC
Confidence            00    1135789999999999999     999999999998643

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=7.2e-40  Score=315.83  Aligned_cols=238  Identities=20%  Similarity=0.194  Sum_probs=190.1

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |++++.||+|+||+||+|++      ||+|++.....     ..+.....+.+|+.+|+.++|        ||    ||+
T Consensus         9 Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~-----~~~~~~~~~~~E~~~l~~~~h--------pn----iv~   71 (277)
T d1o6ya_           9 YELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLA-----RDPSFYLRFRREAQNAAALNH--------PA----IVA   71 (277)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTT-----TCHHHHHHHHHHHHHHHTCCC--------TT----BCC
T ss_pred             eEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhc-----cCHHHHHHHHHHHHHHHhcCC--------CC----CCc
Confidence            49999999999999999973      99999975432     233445678999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGL  283 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL  283 (447)
                      +++++...+..                          ...+|||||||+|| +|.+++.    +++.+++.++.||+.||
T Consensus        72 ~~~~~~~~~~~--------------------------~~~~~lvmE~~~g~-~L~~~~~~~~~l~~~~~~~i~~qi~~al  124 (277)
T d1o6ya_          72 VYDTGEAETPA--------------------------GPLPYIVMEYVDGV-TLRDIVHTEGPMTPKRAIEVIADACQAL  124 (277)
T ss_dssp             EEEEEEEECSS--------------------------SEEEEEEEECCCEE-EHHHHHHHHCSCCHHHHHHHHHHHHHHH
T ss_pred             ccceeeeccCC--------------------------CceEEEEEECCCCC-EehhhhcccCCCCHHHHHHHHHHHHHHH
Confidence            99997653321                          23589999999988 9998876    99999999999999999


Q ss_pred             HHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--------CEEEEecCCCC
Q 013230          284 AVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--------DIFFLDLSQDP  355 (447)
Q Consensus       284 ~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--------g~i~~~~~~~p  355 (447)
                      +|||+ +|||||||||+|||++.++                    .++|+|||.++.....        ..+....|++|
T Consensus       125 ~~lH~-~~iiHrDiKP~NIll~~~~--------------------~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aP  183 (277)
T d1o6ya_         125 NFSHQ-NGIIHRDVKPANIMISATN--------------------AVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSP  183 (277)
T ss_dssp             HHHHH-TTEECCCCSGGGEEEETTS--------------------CEEECCCTTCEECC----------------TTCCH
T ss_pred             HHHHh-CCccCccccCcccccCccc--------------------cceeehhhhhhhhccccccccccccccCcccccCH
Confidence            99999 9999999999999999987                    7999999998765332        22455679999


Q ss_pred             CCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCC--CCccchHHHHHHHHHhcccc------
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFD--RSSKDERDLRSLKKRLDKYN------  427 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~--~~~~~s~~l~dLl~~mL~~d------  427 (447)
                      |++.+...+.+.|||+ +|++.+++.+|..||............+.....++  ....+++++++||++||++|      
T Consensus       184 E~~~~~~~~~~~DiwS-lGvilyelltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~L~~dp~~R~~  262 (277)
T d1o6ya_         184 EQARGDSVDARSDVYS-LGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQ  262 (277)
T ss_dssp             HHHTTCCCCHHHHHHH-HHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCGGGTSSSCCHHHHHHHHHHTCSSGGGSCS
T ss_pred             HHHcCCCCCcceeccc-chHHHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHccCCHhHCHh
Confidence            9999988888889999 99999999999999976655555555554333322  23568999999999999999      


Q ss_pred             CHHHHHcCCCC
Q 013230          428 SAKEAIFDPFF  438 (447)
Q Consensus       428 sa~elL~HPff  438 (447)
                      ||+++ .|+|.
T Consensus       263 sa~~l-~~~l~  272 (277)
T d1o6ya_         263 TAAEM-RADLV  272 (277)
T ss_dssp             SHHHH-HHHHH
T ss_pred             HHHHH-HHHHH
Confidence            55554 45554

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.2e-40  Score=322.08  Aligned_cols=229  Identities=17%  Similarity=0.174  Sum_probs=180.4

Q ss_pred             CcceEEeccccceEEEEece---------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          134 PENIVKVGEGTFGEAFLAGN---------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~---------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      |++.++||+|+||+||+|+.         ||+|.+...       ......+.+.+|+.+|++|+|        ||    
T Consensus        28 ~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~-------~~~~~~~~~~~E~~~l~~l~H--------pn----   88 (299)
T d1jpaa_          28 VKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSG-------YTEKQRRDFLSEASIMGQFDH--------PN----   88 (299)
T ss_dssp             EEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSS-------CCHHHHHHHHHHHHHHTTCCC--------TT----
T ss_pred             cEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcc-------cCHHHHHHHHHHHHHHHhCCC--------CC----
Confidence            48899999999999999973         677776533       223344678999999999998        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQV  279 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qi  279 (447)
                      ||++++++..                              ++.+|+|||||.+| +|.+++.     +++.++..++.||
T Consensus        89 Iv~l~g~~~~------------------------------~~~~~iv~Ey~~~g-~L~~~~~~~~~~l~~~~~~~i~~qi  137 (299)
T d1jpaa_          89 VIHLEGVVTK------------------------------STPVMIITEFMENG-SLDSFLRQNDGQFTVIQLVGMLRGI  137 (299)
T ss_dssp             BCCEEEEECS------------------------------SSSCEEEEECCTTE-EHHHHHHTTTTCSCHHHHHHHHHHH
T ss_pred             CccEEEEEee------------------------------CCEEEEEEEecCCC-cceeeeccccCCCCHHHHHHHHHHH
Confidence            9999999532                              56799999999998 9998775     8999999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----------CEEEE
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----------DIFFL  349 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----------g~i~~  349 (447)
                      +.||+|||+ +||+||||||+||||+.++                    .+||+|||+|+.....          +....
T Consensus       138 a~gl~yLH~-~~iiHrDlKp~NILl~~~~--------------------~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t  196 (299)
T d1jpaa_         138 AAGMKYLAD-MNYVHRDLAARNILVNSNL--------------------VCKVSDFGLSRFLEDDTSDPTYTSALGGKIP  196 (299)
T ss_dssp             HHHHHHHHH-TTCCCSCCCGGGEEECTTC--------------------CEEECCC-----------------------C
T ss_pred             HHHHHHHhh-CCCccCccccceEEECCCC--------------------cEEECCcccceEccCCCCcceeeecccccCC
Confidence            999999999 9999999999999999987                    7999999999875433          12233


Q ss_pred             ecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-
Q 013230          350 DLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-  427 (447)
Q Consensus       350 ~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-  427 (447)
                      ..|++||.+.+..++.+.|||+ +|++.+++++ |..|+.+......... +.....++.+...++++.+|+.+||..| 
T Consensus       197 ~~y~aPE~~~~~~~~~~sDvwS-~Gvvl~el~t~g~~Pf~~~~~~~~~~~-i~~~~~~~~~~~~~~~l~~li~~cl~~~P  274 (299)
T d1jpaa_         197 IRWTAPEAIQYRKFTSASDVWS-YGIVMWEVMSYGERPYWDMTNQDVINA-IEQDYRLPPPMDCPSALHQLMLDCWQKDR  274 (299)
T ss_dssp             GGGSCHHHHHSCCCCHHHHHHH-HHHHHHHHHTTSCCTTTTCCHHHHHHH-HHTTCCCCCCTTCCHHHHHHHHHHTCSST
T ss_pred             ccccCHHHHhcCCCCccccccc-chHHHHHHHhCCCCCCCCCCHHHHHHH-HHcCCCCCCCccchHHHHHHHHHHcCCCH
Confidence            4599999998878888889999 9999999997 7888876544443333 3334456667788999999999999999 


Q ss_pred             ----CHHHHHcC
Q 013230          428 ----SAKEAIFD  435 (447)
Q Consensus       428 ----sa~elL~H  435 (447)
                          |++|++++
T Consensus       275 ~~RPs~~ei~~~  286 (299)
T d1jpaa_         275 NHRPKFGQIVNT  286 (299)
T ss_dssp             TTSCCHHHHHHH
T ss_pred             hHCcCHHHHHHH
Confidence                88877653

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-40  Score=317.74  Aligned_cols=229  Identities=20%  Similarity=0.237  Sum_probs=184.7

Q ss_pred             EEeccccceEEEEec--------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeeee
Q 013230          138 VKVGEGTFGEAFLAG--------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEMF  209 (447)
Q Consensus       138 ~~LG~G~fG~V~~a~--------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l~  209 (447)
                      ++||+|+||+||+|.        .||+|+++...      ......+.+.+|+.+|++|+|        ||    ||+++
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~------~~~~~~~~~~~E~~il~~l~H--------pn----Iv~~~   74 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA------NDPALKDELLAEANVMQQLDN--------PY----IVRMI   74 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----------CHHHHHHHHHHHHHHTCCC--------TT----BCCEE
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhh------CCHHHHHHHHHHHHHHHhCCC--------CC----CceEE
Confidence            479999999999995        38999986432      223345679999999999998        88    99999


Q ss_pred             eEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----CCHHHHHHHHHHHHHHHHH
Q 013230          210 EIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----LNINEARSLLVQVTAGLAV  285 (447)
Q Consensus       210 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----l~~~~~~~i~~Qil~gL~y  285 (447)
                      +++.                               .+..|||||||++| +|.+++.    +++..+..++.||+.||+|
T Consensus        75 g~~~-------------------------------~~~~~lvmE~~~~g-~L~~~l~~~~~l~~~~~~~i~~qi~~gl~y  122 (277)
T d1xbba_          75 GICE-------------------------------AESWMLVMEMAELG-PLNKYLQQNRHVKDKNIIELVHQVSMGMKY  122 (277)
T ss_dssp             EEEE-------------------------------SSSEEEEEECCTTE-EHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEec-------------------------------cCCEEEEEEcCCCC-cHHHHHhhccCCCHHHHHHHHHHHHHHHhh
Confidence            9842                               24589999999998 9999886    8999999999999999999


Q ss_pred             HHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE--------EEEecCCCCCC
Q 013230          286 AEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI--------FFLDLSQDPEL  357 (447)
Q Consensus       286 lH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~--------i~~~~~~~pel  357 (447)
                      ||+ +|||||||||+|||++.++                    .+||+|||+|+.......        .....|++||.
T Consensus       123 lH~-~~iiHrDlKp~Nill~~~~--------------------~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~  181 (277)
T d1xbba_         123 LEE-SNFVHRDLAARNVLLVTQH--------------------YAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPEC  181 (277)
T ss_dssp             HHH-TTEECSCCSGGGEEEEETT--------------------EEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHH
T ss_pred             HHh-CCcccCCCcchhhcccccC--------------------cccccchhhhhhccccccccccccccCCCceecCchh
Confidence            999 9999999999999999987                    899999999987644311        12234899999


Q ss_pred             CCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHH
Q 013230          358 FSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKE  431 (447)
Q Consensus       358 f~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~e  431 (447)
                      +.+...+.+.|||+ +|++.+++++ |..||......... ..+.....++.+..+++++++||.+||..|     |+++
T Consensus       182 l~~~~~~~~sDiwS-~Gv~l~ellt~g~~Pf~~~~~~~~~-~~i~~~~~~~~p~~~~~~~~~li~~cl~~dp~~RPs~~~  259 (277)
T d1xbba_         182 INYYKFSSKSDVWS-FGVLMWEAFSYGQKPYRGMKGSEVT-AMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAA  259 (277)
T ss_dssp             HHHCEEEHHHHHHH-HHHHHHHHHTTTCCSSTTCCHHHHH-HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred             hcCCCCCchhhhcc-chhhhhHHhhCCCCCCCCCCHHHHH-HHHHcCCCCCCCcccCHHHHHHHHHHcCCCHhHCcCHHH
Confidence            98877777889999 9999999997 78888765433332 333334456666788999999999999999     8888


Q ss_pred             H---HcCCCCC
Q 013230          432 A---IFDPFFS  439 (447)
Q Consensus       432 l---L~HPff~  439 (447)
                      +   |+|+|++
T Consensus       260 i~~~L~~~~~~  270 (277)
T d1xbba_         260 VELRLRNYYYD  270 (277)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHhhCHHhh
Confidence            7   5777654

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-39  Score=315.90  Aligned_cols=235  Identities=19%  Similarity=0.222  Sum_probs=188.6

Q ss_pred             CCcceEEeccccceEEEEece-----eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          133 DPENIVKVGEGTFGEAFLAGN-----TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~~-----vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      +|++.++||+|+||+||+|+.     ||+|++.....         ..+.+.+|+.+|++++|        ||    ||+
T Consensus        18 ~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~---------~~~~~~~E~~~l~~l~h--------~n----Iv~   76 (285)
T d1fmka3          18 SLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---------SPEAFLQEAQVMKKLRH--------EK----LVQ   76 (285)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS---------CHHHHHHHHHHHHHCCC--------TT----BCC
T ss_pred             HEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccC---------CHHHHHHHHHHHHhccc--------CC----EeE
Confidence            349999999999999999973     99999864321         23678999999999999        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTA  281 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~  281 (447)
                      +++++.                               ++.+|+|||||.+| +|..++.      +++.+++.++.||+.
T Consensus        77 ~~g~~~-------------------------------~~~~~lv~Ey~~~g-~l~~~~~~~~~~~l~~~~~~~i~~~i~~  124 (285)
T d1fmka3          77 LYAVVS-------------------------------EEPIYIVTEYMSKG-SLLDFLKGETGKYLRLPQLVDMAAQIAS  124 (285)
T ss_dssp             EEEEEC-------------------------------SSSCEEEECCCTTC-BHHHHHSHHHHTTCCHHHHHHHHHHHHH
T ss_pred             EEEEEe-------------------------------cCCeEEEEEecCCC-chhhhhhhcccccchHHHHHHHHHHHHH
Confidence            999842                               34589999999999 8887765      899999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC------EEEEecCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED------IFFLDLSQDP  355 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g------~i~~~~~~~p  355 (447)
                      ||+|||+ +||+||||||+||||+.++                    .+||+|||+|+......      ......|++|
T Consensus       125 gl~~LH~-~~ivH~DlKp~NIll~~~~--------------------~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aP  183 (285)
T d1fmka3         125 GMAYVER-MNYVHRDLRAANILVGENL--------------------VCKVADFGLARLIEDNEYTARQGAKFPIKWTAP  183 (285)
T ss_dssp             HHHHHHH-TTCCCSCCSGGGEEECGGG--------------------CEEECCCCTTC--------------CCGGGSCH
T ss_pred             HHHHHhh-hheecccccceEEEECCCC--------------------cEEEcccchhhhccCCCceeeccccccccccCh
Confidence            9999999 9999999999999999987                    79999999998754331      2334558999


Q ss_pred             CCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHH
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAK  430 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~  430 (447)
                      |.+.+...+.+.|||+ +|++.+++.++..|+............+......+.+..+++++++||++||..|     |++
T Consensus       184 E~~~~~~~~~ksDI~S-~Giil~el~t~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~  262 (285)
T d1fmka3         184 EAALYGRFTIKSDVWS-FGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE  262 (285)
T ss_dssp             HHHHHCCCCHHHHHHH-HHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HHHhCCCCCcHHhhhc-chHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCcccCHHHHHHHHHHcccCHhHCcCHH
Confidence            9998877888889999 9999999998765554332222223333333455667789999999999999999     999


Q ss_pred             HHHc--CCCCCCCC
Q 013230          431 EAIF--DPFFSDLI  442 (447)
Q Consensus       431 elL~--HPff~~~~  442 (447)
                      ++++  |+||+...
T Consensus       263 ~i~~~L~~~~~~~~  276 (285)
T d1fmka3         263 YLQAFLEDYFTSTE  276 (285)
T ss_dssp             HHHHHHHTTTSCSC
T ss_pred             HHHHHHhhhhcCCC
Confidence            9988  99998764

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-40  Score=317.13  Aligned_cols=232  Identities=21%  Similarity=0.247  Sum_probs=187.8

Q ss_pred             CcceE-EeccccceEEEEec--------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          134 PENIV-KVGEGTFGEAFLAG--------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       134 ~~~~~-~LG~G~fG~V~~a~--------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      |.+.+ +||+|+||+||+|.        .||||++...       ......+.+.+|+.+|++|+|        ||    
T Consensus        10 ~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~-------~~~~~~~~~~~E~~il~~l~H--------pn----   70 (285)
T d1u59a_          10 LLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQG-------TEKADTEEMMREAQIMHQLDN--------PY----   70 (285)
T ss_dssp             EEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSS-------CCHHHHHHHHHHHHHHHHCCC--------TT----
T ss_pred             eEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChh-------cCHHHHHHHHHHHHHHHhCCC--------CC----
Confidence            36666 59999999999995        2899998643       223345678999999999998        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQV  279 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qi  279 (447)
                      ||++++++.                               .+.+|||||||+|| +|.+++.     +++..++.++.||
T Consensus        71 Iv~l~g~~~-------------------------------~~~~~lvmE~~~~g-~L~~~l~~~~~~l~~~~~~~i~~qi  118 (285)
T d1u59a_          71 IVRLIGVCQ-------------------------------AEALMLVMEMAGGG-PLHKFLVGKREEIPVSNVAELLHQV  118 (285)
T ss_dssp             BCCEEEEEE-------------------------------SSSEEEEEECCTTE-EHHHHHTTCTTTSCHHHHHHHHHHH
T ss_pred             EeeEeeeec-------------------------------cCeEEEEEEeCCCC-cHHHHhhccccCCCHHHHHHHHHHH
Confidence            999999842                               24589999999998 9999864     8999999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE--------EEEec
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI--------FFLDL  351 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~--------i~~~~  351 (447)
                      +.||+|||+ +||+||||||+|||++.++                    .+||+|||+|+.......        .....
T Consensus       119 ~~gL~ylH~-~~iiHrDlKp~Nill~~~~--------------------~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~  177 (285)
T d1u59a_         119 SMGMKYLEE-KNFVHRDLAARNVLLVNRH--------------------YAKISDFGLSKALGADDSYYTARSAGKWPLK  177 (285)
T ss_dssp             HHHHHHHHH-TTEECCCCSGGGEEEEETT--------------------EEEECCCTTCEECTTCSCEECCCCSSCCCGG
T ss_pred             HHHHHHHHh-CCeecCcCchhheeeccCC--------------------ceeeccchhhhcccccccccccccccccCcc
Confidence            999999999 9999999999999999987                    899999999997654422        12234


Q ss_pred             CCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc---
Q 013230          352 SQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN---  427 (447)
Q Consensus       352 ~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d---  427 (447)
                      |++||++.+...+.+.|||+ +|++.+++++ |..||.......... .+......+.+..+++++.+||++||..|   
T Consensus       178 y~aPE~~~~~~~~~ksDVwS-~Gv~l~E~lt~G~~Pf~~~~~~~~~~-~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~  255 (285)
T d1u59a_         178 WYAPECINFRKFSSRSDVWS-YGVTMWEALSYGQKPYKKMKGPEVMA-FIEQGKRMECPPECPPELYALMSDCWIYKWED  255 (285)
T ss_dssp             GCCHHHHHHCEECHHHHHHH-HHHHHHHHHTTSCCTTTTCCTHHHHH-HHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGG
T ss_pred             ccChHHHhCCCCCccchhhc-chHHHHHHHhCCCCCCCCCCHHHHHH-HHHcCCCCCCCCcCCHHHHHHHHHHcCCCHhH
Confidence            88999998777778889999 9999999987 788887654333333 23333455566789999999999999999   


Q ss_pred             --CHHHH---HcCCCCC
Q 013230          428 --SAKEA---IFDPFFS  439 (447)
Q Consensus       428 --sa~el---L~HPff~  439 (447)
                        |+.++   |+|+|++
T Consensus       256 RPs~~~i~~~L~~~~~~  272 (285)
T d1u59a_         256 RPDFLTVEQRMRACYYS  272 (285)
T ss_dssp             SCCHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence              66655   7888874

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-39  Score=308.72  Aligned_cols=229  Identities=17%  Similarity=0.215  Sum_probs=191.0

Q ss_pred             CCCcceEEeccccceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccccee
Q 013230          132 SDPENIVKVGEGTFGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFV  206 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv  206 (447)
                      .+|+++++||+|+||+||+|+     .||+|+++....         ..+.+.+|+.++++++|        ||    ||
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~---------~~~~~~~Ev~~~~~l~H--------pn----Iv   62 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM---------SEDEFIEEAKVMMNLSH--------EK----LV   62 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSS---------CHHHHHHHHHHHHTCCC--------TT----BC
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcC---------CHHHHHHHHHHHHhcCC--------Cc----ee
Confidence            357999999999999999998     499999885432         34678999999999998        88    99


Q ss_pred             eeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHH
Q 013230          207 EMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTA  281 (447)
Q Consensus       207 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~  281 (447)
                      ++++++.                              .++.+|+||||+.+| +|..++.     +++..++.++.||+.
T Consensus        63 ~~~g~~~------------------------------~~~~~~iv~Ey~~~g-~l~~~~~~~~~~~~~~~~~~i~~qi~~  111 (258)
T d1k2pa_          63 QLYGVCT------------------------------KQRPIFIITEYMANG-CLLNYLREMRHRFQTQQLLEMCKDVCE  111 (258)
T ss_dssp             CEEEEEC------------------------------CSSSEEEEEECCTTE-EHHHHHHSGGGCCCHHHHHHHHHHHHH
T ss_pred             eEEEEEe------------------------------eCCceEEEEEccCCC-cHHHhhhccccCCcHHHHHHHHHHHHH
Confidence            9999853                              256799999999998 8888855     889999999999999


Q ss_pred             HHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------CEEEEecCCCC
Q 013230          282 GLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------DIFFLDLSQDP  355 (447)
Q Consensus       282 gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g~i~~~~~~~p  355 (447)
                      ||+|||+ +||+||||||+|||++.++                    .+||+|||+|+.....      +......|++|
T Consensus       112 gl~~LH~-~~iiH~dlk~~Nill~~~~--------------------~~kl~DfG~a~~~~~~~~~~~~~~~~t~~y~aP  170 (258)
T d1k2pa_         112 AMEYLES-KQFLHRDLAARNCLVNDQG--------------------VVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPP  170 (258)
T ss_dssp             HHHHHHH-TTBCCSCCSGGGEEECTTC--------------------CEEECCCSSCCBCSSSSCCCCCCSCCCGGGCCH
T ss_pred             HHHHHhh-cCcccccccceeEEEcCCC--------------------cEEECcchhheeccCCCceeecccCCCCCcCCc
Confidence            9999999 9999999999999999987                    7999999999865433      22233448999


Q ss_pred             CCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CH
Q 013230          356 ELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SA  429 (447)
Q Consensus       356 elf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa  429 (447)
                      |++.+..++.+.|||+ +|++.+++.+ |..||........... +......+.+...++++++||++||+.|     |+
T Consensus       171 E~~~~~~~~~ksDiwS-~G~~l~el~t~g~~Pf~~~~~~~~~~~-i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~  248 (258)
T d1k2pa_         171 EVLMYSKFSSKSDIWA-FGVLMWEIYSLGKMPYERFTNSETAEH-IAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTF  248 (258)
T ss_dssp             HHHHHCCCCHHHHHHH-HHHHHHHHHTTSCCTTTTSCHHHHHHH-HHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCH
T ss_pred             HHhcCCCCCcceeecc-cchhhHhHHhcCCCCCCCCCHHHHHHH-HHhCCCCCCcccccHHHHHHHHHHccCCHhHCcCH
Confidence            9998878888889999 9999999987 6788876544443333 3334455667788999999999999999     99


Q ss_pred             HHHHcC
Q 013230          430 KEAIFD  435 (447)
Q Consensus       430 ~elL~H  435 (447)
                      +|+++|
T Consensus       249 ~eil~~  254 (258)
T d1k2pa_         249 KILLSN  254 (258)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999987

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-39  Score=316.70  Aligned_cols=233  Identities=18%  Similarity=0.178  Sum_probs=178.9

Q ss_pred             CCcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCc
Q 013230          133 DPENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA  201 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~  201 (447)
                      +|+++++||+|+||.||+|+           .||+|++....       .....+.+.+|+.++.++.|  |     +| 
T Consensus        14 ~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~-------~~~~~~~~~~e~~~l~~~~~--h-----~~-   78 (299)
T d1ywna1          14 RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA-------THSEHRALMSELKILIHIGH--H-----LN-   78 (299)
T ss_dssp             GEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCC--C-----TT-
T ss_pred             HEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEcccc-------CcHHHHHHHHHHHHHHhhcC--C-----Ce-
Confidence            34999999999999999996           38889876432       22334667888888888865  1     55 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------------
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------------  266 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------------  266 (447)
                         ||.+++++.                             .++..+|+|||||++| +|.+++.               
T Consensus        79 ---iv~~~~~~~-----------------------------~~~~~~~iv~E~~~~g-~L~~~l~~~~~~~~~~~~~~~~  125 (299)
T d1ywna1          79 ---VVNLLGACT-----------------------------KPGGPLMVIVEFCKFG-NLSTYLRSKRNEFVPYKVAPED  125 (299)
T ss_dssp             ---BCCEEEEEC-----------------------------STTSCCEEEEECCTTC-BHHHHHHHTGGGBCC-------
T ss_pred             ---EEEeeeeec-----------------------------cCCCeEEEEEEecCCC-cHHHHHHhccccccccccchhh
Confidence               999988742                             2245689999999998 9999873               


Q ss_pred             -----CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeec
Q 013230          267 -----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRIN  341 (447)
Q Consensus       267 -----l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~  341 (447)
                           +++.+++.++.||+.||+|||+ +|||||||||+||||+.++                    .+||+|||+|+..
T Consensus       126 ~~~~~l~~~~~~~~~~qi~~gl~ylH~-~~ivHrDlKp~NILl~~~~--------------------~~Kl~DFGla~~~  184 (299)
T d1ywna1         126 LYKDFLTLEHLICYSFQVAKGMEFLAS-RKCIHRDLAARNILLSEKN--------------------VVKICDFGLARDI  184 (299)
T ss_dssp             ----CBCHHHHHHHHHHHHHHHHHHHH-TTCCCSCCCGGGEEECGGG--------------------CEEECC------C
T ss_pred             hhcccCCHHHHHHHHHHHHHHHHHHHh-CCCcCCcCCccceeECCCC--------------------cEEEccCcchhhc
Confidence                 7889999999999999999999 9999999999999999887                    7999999999865


Q ss_pred             CCC-------CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCC-CCCChhHHHHHHHHHHhhccCCCCCccch
Q 013230          342 TGE-------DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGS-FPKTNVLWLVYLVDMLLLKKTFDRSSKDE  413 (447)
Q Consensus       342 ~~~-------g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~-~p~~~~~~~~~~~~~l~~~~~~~~~~~~s  413 (447)
                      ...       .......|++||++.+...+.+.|||+ +|++.++++++. .|+........+...+.....++.+...+
T Consensus       185 ~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS-~Gvil~ellt~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (299)
T d1ywna1         185 YKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWS-FGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTT  263 (299)
T ss_dssp             CSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHH-HHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCC
T ss_pred             cccccccccCceeeCccccchhHhhcCCCCcccceee-hHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCCccCC
Confidence            332       223445699999998878888889999 999999999865 56654433333444444445566667789


Q ss_pred             HHHHHHHHHhcccc-----CHHHHHcC
Q 013230          414 RDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       414 ~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      +++++||.+||+.|     |++|+++|
T Consensus       264 ~~l~~li~~cl~~dP~~Rpt~~eil~~  290 (299)
T d1ywna1         264 PEMYQTMLDCWHGEPSQRPTFSELVEH  290 (299)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            99999999999999     99999987

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-39  Score=310.61  Aligned_cols=229  Identities=17%  Similarity=0.141  Sum_probs=180.2

Q ss_pred             CcceEEeccccceEEEEec----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccc
Q 013230          134 PENIVKVGEGTFGEAFLAG----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACT  203 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~  203 (447)
                      |+..+.||+|+||+||+|.          .||||++....       .+.....+.+|+.+|++|+|        ||   
T Consensus         9 ~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~-------~~~~~~~~~~E~~il~~l~H--------~n---   70 (283)
T d1mqba_           9 VTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY-------TEKQRVDFLGEAGIMGQFSH--------HN---   70 (283)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC-------CHHHHHHHHHHHHHHHTCCC--------TT---
T ss_pred             eEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECccc-------ChHHHHHHHHHHHHHHhcCC--------CC---
Confidence            5888999999999999996          38999886432       22334578999999999998        88   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHH
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQ  278 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Q  278 (447)
                       ||++++++.                              ..+.+|+|||||.+| +|.+++.     +++.++..++.|
T Consensus        71 -Iv~~~g~~~------------------------------~~~~~~~v~e~~~~~-~l~~~~~~~~~~~~~~~~~~i~~~  118 (283)
T d1mqba_          71 -IIRLEGVIS------------------------------KYKPMMIITEYMENG-ALDKFLREKDGEFSVLQLVGMLRG  118 (283)
T ss_dssp             -BCCEEEEEC------------------------------SSSSEEEEEECCTTE-EHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             -EeeeeEEEe------------------------------cCCceEEEEEecccC-cchhhhhcccccccHHHHHHHHHH
Confidence             999999853                              256799999999988 7777654     899999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC--------CEEEEe
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE--------DIFFLD  350 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~--------g~i~~~  350 (447)
                      |+.||+|||+ ++|+||||||+||||+.++                    .+||+|||+|+.....        +.....
T Consensus       119 i~~gl~~lH~-~~iiHrDlKp~NILl~~~~--------------------~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~  177 (283)
T d1mqba_         119 IAAGMKYLAN-MNYVHRDLAARNILVNSNL--------------------VCKVSDFGLSRVLEDDPEATYTTSGGKIPI  177 (283)
T ss_dssp             HHHHHHHHHH-TTCCCSCCCGGGEEECTTC--------------------CEEECCCCC-----------------CCCG
T ss_pred             HHHhhhhccc-cccccCccccceEEECCCC--------------------eEEEcccchhhcccCCCccceEeccCCCCc
Confidence            9999999999 9999999999999999987                    7999999999875433        111234


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc---
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN---  427 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d---  427 (447)
                      .|++||.+.+...+.+.|||+ +|++.++++++..|+........+...+......+.+...+.++.+||.+||..|   
T Consensus       178 ~Y~APE~l~~~~~~~~sDI~S-~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~p~~  256 (283)
T d1mqba_         178 RWTAPEAISYRKFTSASDVWS-FGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERAR  256 (283)
T ss_dssp             GGSCHHHHHSCCCCHHHHHHH-HHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTT
T ss_pred             cccCHHHHccCCCCCcccccc-cHHHHHHHHhCCCCccccCCHHHHHHHHhccCCCCCchhhHHHHHHHHHHHCcCCHhH
Confidence            599999999888888889999 9999999998665544332222233344444456666778999999999999999   


Q ss_pred             --CHHHHHc
Q 013230          428 --SAKEAIF  434 (447)
Q Consensus       428 --sa~elL~  434 (447)
                        |+.|+++
T Consensus       257 RPt~~eil~  265 (283)
T d1mqba_         257 RPKFADIVS  265 (283)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence              8888865

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-39  Score=309.79  Aligned_cols=228  Identities=23%  Similarity=0.205  Sum_probs=178.2

Q ss_pred             CcceEEeccccceEEEEece---------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccc
Q 013230          134 PENIVKVGEGTFGEAFLAGN---------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTT  204 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~---------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~  204 (447)
                      |++.+.||+|+||+||+|++         ||+|++...       ......+.+.+|+.+|++++|        ||    
T Consensus         9 ~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~-------~~~~~~~~~~~E~~~l~~l~H--------pn----   69 (273)
T d1mp8a_           9 IELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNC-------TSDSVREKFLQEALTMRQFDH--------PH----   69 (273)
T ss_dssp             EEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTT-------TSHHHHHHHHHHHHHHHTCCC--------TT----
T ss_pred             eEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccc-------cCHHHHHHHHHHHHHHHhCCC--------CC----
Confidence            49999999999999999973         667766432       223345678999999999998        88    


Q ss_pred             eeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHH
Q 013230          205 FVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQV  279 (447)
Q Consensus       205 iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qi  279 (447)
                      ||++++++.                               ++.+|+|||||.+| +|.+++.     +++..++.++.||
T Consensus        70 Iv~l~~~~~-------------------------------~~~~~iv~E~~~~g-~l~~~~~~~~~~l~~~~~~~~~~qi  117 (273)
T d1mp8a_          70 IVKLIGVIT-------------------------------ENPVWIIMELCTLG-ELRSFLQVRKYSLDLASLILYAYQL  117 (273)
T ss_dssp             BCCEEEEEC-------------------------------SSSCEEEEECCTTE-EHHHHHHHTTTTSCHHHHHHHHHHH
T ss_pred             EeeEEEEEe-------------------------------cCeEEEEEEeccCC-cHHhhhhccCCCCCHHHHHHHHHHH
Confidence            999999842                               35689999999998 8887754     8999999999999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------CEEEEecCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------DIFFLDLSQ  353 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------g~i~~~~~~  353 (447)
                      +.||.|||+ ++||||||||+|||++.++                    .+||+|||+|+.....      .+.....|+
T Consensus       118 ~~gl~ylH~-~~iiHrDlKp~NIll~~~~--------------------~~Kl~DfG~a~~~~~~~~~~~~~~~gt~~y~  176 (273)
T d1mp8a_         118 STALAYLES-KRFVHRDIAARNVLVSSND--------------------CVKLGDFGLSRYMEDSTYYKASKGKLPIKWM  176 (273)
T ss_dssp             HHHHHHHHH-TTCCCSCCSGGGEEEEETT--------------------EEEECC-------------------CCGGGC
T ss_pred             HHHhhhhcc-cCeeccccchhheeecCCC--------------------cEEEccchhheeccCCcceeccceecCcccc
Confidence            999999999 9999999999999999987                    8999999999875432      112234589


Q ss_pred             CCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----
Q 013230          354 DPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----  427 (447)
Q Consensus       354 ~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----  427 (447)
                      +||.+.+..++.+.|||+ +|++.+++++ |..|+...........+ ......+.+..+++++++||.+||..|     
T Consensus       177 apE~l~~~~~~~~~DiwS-lGvil~e~lt~g~~P~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp  254 (273)
T d1mp8a_         177 APESINFRRFTSASDVWM-FGVCMWEILMHGVKPFQGVKNNDVIGRI-ENGERLPMPPNCPPTLYSLMTKCWAYDPSRRP  254 (273)
T ss_dssp             CHHHHHHCCCSHHHHHHH-HHHHHHHHHTTSCCTTTTCCGGGHHHHH-HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             hhhHhccCCCCCcccccc-chHHHHHHHhcCCCCCCCCCHHHHHHHH-HcCCCCCCCCCCCHHHHHHHHHHcCCCHhHCc
Confidence            999998878888889999 9999999876 67777654433333333 334455667789999999999999999     


Q ss_pred             CHHHHHcC
Q 013230          428 SAKEAIFD  435 (447)
Q Consensus       428 sa~elL~H  435 (447)
                      |++|+++|
T Consensus       255 s~~ei~~~  262 (273)
T d1mp8a_         255 RFTELKAQ  262 (273)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            99999876

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-39  Score=314.05  Aligned_cols=230  Identities=18%  Similarity=0.176  Sum_probs=185.8

Q ss_pred             CCCcceEEeccccceEEEEece----------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCc
Q 013230          132 SDPENIVKVGEGTFGEAFLAGN----------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA  201 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~~----------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~  201 (447)
                      .+|+++++||+|+||+||+|+.          ||+|.+...       ...+..+.+.+|+.+|++|+|        || 
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~-------~~~~~~~~~~~E~~~l~~l~H--------pn-   72 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA-------TSPKANKEILDEAYVMASVDN--------PH-   72 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC-----------CTHHHHHHHHHHHHHCCC--------TT-
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccc-------cCHHHHHHHHHHHHHHHhCCC--------CC-
Confidence            3579999999999999999962          777776532       233445789999999999998        88 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHH
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLL  276 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~  276 (447)
                         ||++++++.                               ++..+++|||+.+| +|.+++.     +++..++.++
T Consensus        73 ---Iv~l~g~~~-------------------------------~~~~~~v~e~~~~~-~l~~~~~~~~~~~~~~~~~~i~  117 (317)
T d1xkka_          73 ---VCRLLGICL-------------------------------TSTVQLITQLMPFG-CLLDYVREHKDNIGSQYLLNWC  117 (317)
T ss_dssp             ---BCCEEEEEE-------------------------------SSSEEEEEECCTTC-BHHHHHHHTSSSCCHHHHHHHH
T ss_pred             ---EeeEEEEEe-------------------------------cCCeeEEEEeccCC-cccccccccccCCCHHHHHHHH
Confidence               999999854                               34588999999988 7777655     8999999999


Q ss_pred             HHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC-------EEEE
Q 013230          277 VQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED-------IFFL  349 (447)
Q Consensus       277 ~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g-------~i~~  349 (447)
                      .||+.||+|||+ +|||||||||+|||++.++                    .+||+|||+|+......       ....
T Consensus       118 ~qi~~gl~yLH~-~~iiHrDlKp~NIll~~~~--------------------~~kl~DFGla~~~~~~~~~~~~~~~~gt  176 (317)
T d1xkka_         118 VQIAKGMNYLED-RRLVHRDLAARNVLVKTPQ--------------------HVKITDFGLAKLLGAEEKEYHAEGGKVP  176 (317)
T ss_dssp             HHHHHHHHHHHH-TTCCCSCCCGGGEEEEETT--------------------EEEECCCSHHHHTTTTCC--------CC
T ss_pred             HHHHHHHHHHHH-cCcccCcchhhcceeCCCC--------------------CeEeeccccceecccccccccccccccC
Confidence            999999999999 9999999999999999987                    89999999998764331       1223


Q ss_pred             ecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-
Q 013230          350 DLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-  427 (447)
Q Consensus       350 ~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-  427 (447)
                      ..|++||.+.+..++.+.|||+ +|++.+++++ +..|+....... +...+.....++.+...++++.+|+.+||..| 
T Consensus       177 ~~y~APE~l~~~~~~~~sDvwS-~Gvil~el~t~g~~p~~~~~~~~-~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP  254 (317)
T d1xkka_         177 IKWMALESILHRIYTHQSDVWS-YGVTVWELMTFGSKPYDGIPASE-ISSILEKGERLPQPPICTIDVYMIMVKCWMIDA  254 (317)
T ss_dssp             TTTSCHHHHHHCCCCHHHHHHH-HHHHHHHHHTTSCCTTTTSCGGG-HHHHHHHTCCCCCCTTBCHHHHHHHHHHTCSSG
T ss_pred             ccccChHHHhcCCCChhhhhhh-HHHHHHHHHHCCCCCCCCCCHHH-HHHHHHcCCCCCCCcccCHHHHHHHHHhCCCCh
Confidence            4599999998878888889999 9999999998 567775432222 23334334556667789999999999999999 


Q ss_pred             ----CHHHHHcC
Q 013230          428 ----SAKEAIFD  435 (447)
Q Consensus       428 ----sa~elL~H  435 (447)
                          |+.|+++|
T Consensus       255 ~~RPs~~eil~~  266 (317)
T d1xkka_         255 DSRPKFRELIIE  266 (317)
T ss_dssp             GGSCCHHHHHHH
T ss_pred             hhCcCHHHHHHH
Confidence                99999877

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-38  Score=306.61  Aligned_cols=230  Identities=20%  Similarity=0.189  Sum_probs=182.9

Q ss_pred             CCcceEEeccccceEEEEec---------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCccc
Q 013230          133 DPENIVKVGEGTFGEAFLAG---------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACT  203 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~---------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~  203 (447)
                      +|++++.||+|+||+||+|+         .||+|++.....     ......+.+.+|+.+|++++|        ||   
T Consensus         9 d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~-----~~~~~~~~~~~Ei~~l~~l~H--------~n---   72 (273)
T d1u46a_           9 DLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVL-----SQPEAMDDFIREVNAMHSLDH--------RN---   72 (273)
T ss_dssp             GEEEEEECC----CCCEEEEEECTTSCEEEEEEEC-------------CHHHHHHHHHHHHHHHCCC--------TT---
T ss_pred             HeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhc-----CCHHHHHHHHHHHHHHHhCCC--------CC---
Confidence            56999999999999999996         289998765432     233445788999999999998        88   


Q ss_pred             ceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHH
Q 013230          204 TFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQ  278 (447)
Q Consensus       204 ~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Q  278 (447)
                       ||++++++.                               +..+|+|||||.+| +|.+++.     +++..++.++.|
T Consensus        73 -Iv~~~g~~~-------------------------------~~~~~lv~e~~~~~-~l~~~~~~~~~~l~~~~~~~~~~q  119 (273)
T d1u46a_          73 -LIRLYGVVL-------------------------------TPPMKMVTELAPLG-SLLDRLRKHQGHFLLGTLSRYAVQ  119 (273)
T ss_dssp             -BCCEEEEEC-------------------------------SSSCEEEEECCTTC-BHHHHHHHHGGGSCHHHHHHHHHH
T ss_pred             -EEEEEEEEe-------------------------------ecchheeeeeecCc-chhhhhhcccCCCCHHHHHHHHHH
Confidence             999999852                               34589999999988 7777654     999999999999


Q ss_pred             HHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE--------EEEe
Q 013230          279 VTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI--------FFLD  350 (447)
Q Consensus       279 il~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~--------i~~~  350 (447)
                      |+.||.|||+ +||+||||||+|||++.++                    .+||+|||+|+.......        ....
T Consensus       120 i~~gl~ylH~-~~iiHrDikp~NIll~~~~--------------------~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~  178 (273)
T d1u46a_         120 VAEGMGYLES-KRFIHRDLAARNLLLATRD--------------------LVKIGDFGLMRALPQNDDHYVMQEHRKVPF  178 (273)
T ss_dssp             HHHHHHHHHH-TTEECSCCCGGGEEEEETT--------------------EEEECCCTTCEECCC-CCEEEC-----CCG
T ss_pred             HHHHHHHhhh-CCEeeeeecHHHhcccccc--------------------ceeeccchhhhhcccCCCcceecCccccCc
Confidence            9999999999 9999999999999999987                    899999999998644421        1123


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc--
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN--  427 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d--  427 (447)
                      .|++||.+.+...+...|||+ +|++.+++++ |..||...........+......++.+..+++++++||.+||..|  
T Consensus       179 ~~~aPE~~~~~~~~~~~Di~S-~Gvil~emlt~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~  257 (273)
T d1u46a_         179 AWCAPESLKTRTFSHASDTWM-FGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPE  257 (273)
T ss_dssp             GGCCHHHHHHCEEEHHHHHHH-HHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             ccCCHHHHhCCCCCcchhhhh-hHHHHHHHHhCCCCCCCCcCHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHcCCChh
Confidence            478899888877777779999 9999999997 789987766666666666555566677789999999999999999  


Q ss_pred             ---CHHHHH
Q 013230          428 ---SAKEAI  433 (447)
Q Consensus       428 ---sa~elL  433 (447)
                         |++|++
T Consensus       258 ~RPt~~ei~  266 (273)
T d1u46a_         258 DRPTFVALR  266 (273)
T ss_dssp             GSCCHHHHH
T ss_pred             HCcCHHHHH
Confidence               998875

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-38  Score=309.55  Aligned_cols=231  Identities=17%  Similarity=0.151  Sum_probs=185.1

Q ss_pred             CCCcceEEeccccceEEEEece--------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCCcc
Q 013230          132 SDPENIVKVGEGTFGEAFLAGN--------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLNAC  202 (447)
Q Consensus       132 ~~~~~~~~LG~G~fG~V~~a~~--------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n~~  202 (447)
                      .+|++.++||+|+||+||+|+.        ||||.+...       ......+.+.+|+.+|.++ +|        ||  
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~-------~~~~~~~~~~~E~~~l~~l~~H--------pn--   72 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY-------ASKDDHRDFAGELEVLCKLGHH--------PN--   72 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC-------------CHHHHHHHHHTTCCCC--------TT--
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcc-------cChHHHHHHHHHHHHHHhccCC--------CC--
Confidence            3559999999999999999973        677776533       1222346789999999998 57        77  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc----------------
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL----------------  266 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~----------------  266 (447)
                        ||++++++..                              ++.+|||||||+|| +|.+++.                
T Consensus        73 --Iv~~~~~~~~------------------------------~~~~~iV~ey~~~g-~L~~~l~~~~~~~~~~~~~~~~~  119 (309)
T d1fvra_          73 --IINLLGACEH------------------------------RGYLYLAIEYAPHG-NLLDFLRKSRVLETDPAFAIANS  119 (309)
T ss_dssp             --BCCEEEEEEE------------------------------TTEEEEEECCCTTC-BHHHHHHTTCHHHHCHHHHHHTT
T ss_pred             --EeeEEEEEec------------------------------CCeeEEEEEecCCC-cHHHHHhhccccccchhhhcccc
Confidence              9999999764                              56799999999998 9999872                


Q ss_pred             ----CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecC
Q 013230          267 ----LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINT  342 (447)
Q Consensus       267 ----l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~  342 (447)
                          +++..+..++.||+.||.|||+ ++|+||||||+|||++.++                    .+||+|||+|+...
T Consensus       120 ~~~~l~~~~~~~~~~qia~gl~~lH~-~~iiHrDlkp~NIL~~~~~--------------------~~kl~DfG~a~~~~  178 (309)
T d1fvra_         120 TASTLSSQQLLHFAADVARGMDYLSQ-KQFIHRDLAARNILVGENY--------------------VAKIADFGLSRGQE  178 (309)
T ss_dssp             BSCSSCHHHHHHHHHHHHHHHHHHHH-TTEECSCCSGGGEEECGGG--------------------CEEECCTTCEESSC
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHhhhc-CCccccccccceEEEcCCC--------------------ceEEcccccccccc
Confidence                7999999999999999999999 9999999999999999987                    79999999997643


Q ss_pred             CC----CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCC-CCChhHHHHHHHHHHhhccCCCCCccchHHHH
Q 013230          343 GE----DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSF-PKTNVLWLVYLVDMLLLKKTFDRSSKDERDLR  417 (447)
Q Consensus       343 ~~----g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~-p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~  417 (447)
                      ..    .+.....|++||.+.+..++.+.|||+ +|++.++++.+.. |+........ ...+.....++.+..++++++
T Consensus       179 ~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwS-fGvil~ell~~~~~p~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~  256 (309)
T d1fvra_         179 VYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWS-YGVLLWEIVSLGGTPYCGMTCAEL-YEKLPQGYRLEKPLNCDDEVY  256 (309)
T ss_dssp             EECCC----CCTTTCCHHHHHHCEECHHHHHHH-HHHHHHHHHTTSCCTTTTCCHHHH-HHHGGGTCCCCCCTTBCHHHH
T ss_pred             ccccccceecCCcccchHHhccCCCCccceeeh-hHHHHHHHHhcCCCCCCCCCHHHH-HHHHHhcCCCCCCccCCHHHH
Confidence            22    223445689999998877778889999 9999999998764 5654433333 333444455666778999999


Q ss_pred             HHHHHhcccc-----CHHHHHcC
Q 013230          418 SLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       418 dLl~~mL~~d-----sa~elL~H  435 (447)
                      +||++||..|     |++|+++|
T Consensus       257 ~li~~cl~~dP~~RPs~~eil~~  279 (309)
T d1fvra_         257 DLMRQCWREKPYERPSFAQILVS  279 (309)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHcCCChhHCcCHHHHHHH
Confidence            9999999999     99999876

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.6e-38  Score=304.90  Aligned_cols=229  Identities=21%  Similarity=0.196  Sum_probs=186.6

Q ss_pred             CCcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCc
Q 013230          133 DPENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNA  201 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~  201 (447)
                      +|+++++||+|+||+||+|+           .||||++....       .....+.+.+|+.+|+.++|        || 
T Consensus        14 ~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~-------~~~~~~~~~~E~~il~~l~h--------~n-   77 (301)
T d1lufa_          14 NIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA-------SADMQADFQREAALMAEFDN--------PN-   77 (301)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC-------CHHHHHHHHHHHHHHHTCCC--------TT-
T ss_pred             HcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhc-------ChHHHHHHHHHHHHHHhcCC--------CC-
Confidence            35999999999999999995           38999886432       22345678999999999998        88 


Q ss_pred             ccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---------------
Q 013230          202 CTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---------------  266 (447)
Q Consensus       202 ~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---------------  266 (447)
                         |+++++++.                              ..+.++++|||+.+| +|.+++.               
T Consensus        78 ---iv~~~~~~~------------------------------~~~~~~~v~e~~~~g-~L~~~l~~~~~~~~~~~~~~~~  123 (301)
T d1lufa_          78 ---IVKLLGVCA------------------------------VGKPMCLLFEYMAYG-DLNEFLRSMSPHTVCSLSHSDL  123 (301)
T ss_dssp             ---BCCEEEEEC------------------------------SSSSCEEEEECCTTC-BHHHHHHHTCC-----------
T ss_pred             ---cccceeeec------------------------------cCCceEEEEEecCCC-cHHHHHHhcCcccccccccccc
Confidence               999999853                              256799999999988 9998873               


Q ss_pred             -------------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEe
Q 013230          267 -------------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTII  333 (447)
Q Consensus       267 -------------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~  333 (447)
                                   +++..+..++.||+.||+|||+ ++||||||||+|||++.++                    .+||+
T Consensus       124 ~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~-~~ivHrDlKp~NILld~~~--------------------~~Kl~  182 (301)
T d1lufa_         124 STRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE-RKFVHRDLATRNCLVGENM--------------------VVKIA  182 (301)
T ss_dssp             -----------CCCCHHHHHHHHHHHHHHHHHHHH-TTCCCSCCSGGGEEECGGG--------------------CEEEC
T ss_pred             chhhhccccCCCCCCHHHHHHHHHHHHHHhhhccc-CCeEeeEEcccceEECCCC--------------------cEEEc
Confidence                         6888999999999999999999 9999999999999999987                    79999


Q ss_pred             eccceeecCCCC-------EEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCC-CCCChhHHHHHHHHHHhhccC
Q 013230          334 DFTLSRINTGED-------IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGS-FPKTNVLWLVYLVDMLLLKKT  405 (447)
Q Consensus       334 DFGla~~~~~~g-------~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~-~p~~~~~~~~~~~~~l~~~~~  405 (447)
                      |||+|+......       ......|++||.+.+..++.+.|||+ +|++.++++.+. .|+......+... .+.....
T Consensus       183 DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS-~Gvvl~ell~~~~~p~~~~~~~e~~~-~v~~~~~  260 (301)
T d1lufa_         183 DFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWA-YGVVLWEIFSYGLQPYYGMAHEEVIY-YVRDGNI  260 (301)
T ss_dssp             CCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHH-HHHHHHHHHTTTCCTTTTSCHHHHHH-HHHTTCC
T ss_pred             cchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhcc-chhhHHHHHccCCCCCCCCCHHHHHH-HHHcCCC
Confidence            999998653321       11234589999999888888889999 999999998886 4665544333333 3333445


Q ss_pred             CCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          406 FDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       406 ~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      .+.+..+++++.+||.+||+.|     |+.|+++
T Consensus       261 ~~~p~~~~~~~~~li~~cl~~~P~~RPt~~ev~~  294 (301)
T d1lufa_         261 LACPENCPLELYNLMRLCWSKLPADRPSFCSIHR  294 (301)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCccchHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence            5567788999999999999999     9999864

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-37  Score=296.43  Aligned_cols=228  Identities=19%  Similarity=0.238  Sum_probs=179.7

Q ss_pred             CCcceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceeee
Q 013230          133 DPENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVEM  208 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~l  208 (447)
                      +|+++++||+|+||.||+|+    .||+|+++.+.          ..+.+.+|+.++++++|        ||    ||++
T Consensus         8 ~~~~~~~lG~G~fg~Vy~~~~~~~~vAvK~i~~~~----------~~~~~~~E~~~l~~l~H--------pn----Iv~~   65 (262)
T d1byga_           8 ELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA----------TAQAFLAEASVMTQLRH--------SN----LVQL   65 (262)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTEEEEEEECCCCC------------HHHHHTHHHHTTCCC--------TT----BCCE
T ss_pred             HeEEeEEEecCCCeEEEEEEECCeEEEEEEECcHH----------HHHHHHHHHHHHHhCCC--------CC----EeeE
Confidence            45899999999999999998    49999986332          33678999999999998        88    9999


Q ss_pred             eeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc------CCHHHHHHHHHHHHHH
Q 013230          209 FEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL------LNINEARSLLVQVTAG  282 (447)
Q Consensus       209 ~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~------l~~~~~~~i~~Qil~g  282 (447)
                      ++++..                             .++.+|+||||+.+| +|.+++.      +++..++.++.||+.|
T Consensus        66 ~g~~~~-----------------------------~~~~~~lv~ey~~~g-~L~~~l~~~~~~~l~~~~~~~i~~~i~~a  115 (262)
T d1byga_          66 LGVIVE-----------------------------EKGGLYIVTEYMAKG-SLVDYLRSRGRSVLGGDCLLKFSLDVCEA  115 (262)
T ss_dssp             EEEECC-----------------------------C--CCEEEECCCTTE-EHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             EEEEEe-----------------------------cCCcEEEEEeccCCC-CHHHHHHhcCCCCCCHHHHHHHHHHHHhh
Confidence            998531                             245689999999999 9999875      8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCCE--EEEecCCCCCCCCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGEDI--FFLDLSQDPELFSG  360 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g~--i~~~~~~~pelf~g  360 (447)
                      |+|||+ .+|+||||||+|||++.++                    .+||+|||+++.......  .....|++||.+.+
T Consensus       116 l~ylH~-~~ivH~dlkp~Nil~~~~~--------------------~~kl~dfg~s~~~~~~~~~~~~~~~y~aPE~l~~  174 (262)
T d1byga_         116 MEYLEG-NNFVHRDLAARNVLVSEDN--------------------VAKVSDFGLTKEASSTQDTGKLPVKWTAPEALRE  174 (262)
T ss_dssp             HHHHHH-TTCCCSCCSGGGEEECTTS--------------------CEEECCCCC------------CCTTTSCHHHHHH
T ss_pred             cccccc-CceeccccchHhheecCCC--------------------CEeecccccceecCCCCccccccccCCChHHHhC
Confidence            999999 9999999999999999987                    799999999997654422  22234899999887


Q ss_pred             CCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          361 PKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       361 ~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      ...+...|||+ +|++.+++++ +..|+........ ...+......+.+...++++++||++||..|     |+.|+++
T Consensus       175 ~~~t~~sDIwS-fG~il~el~t~~~~p~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~Rps~~~l~~  252 (262)
T d1byga_         175 KKFSTKSDVWS-FGILLWEIYSFGRVPYPRIPLKDV-VPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLRE  252 (262)
T ss_dssp             CCCCHHHHHHH-HHHHHHHHHTTSCCSCTTSCGGGH-HHHHTTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCChHHHHHh-HHHHHHHHHHCCCCCCCCCCHHHH-HHHHHcCCCCCCCccCCHHHHHHHHHHcccCHhHCcCHHHHHH
Confidence            77778889999 9999999997 5666654433322 3333334555666778999999999999999     9999886


Q ss_pred             C
Q 013230          435 D  435 (447)
Q Consensus       435 H  435 (447)
                      +
T Consensus       253 ~  253 (262)
T d1byga_         253 Q  253 (262)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.8e-37  Score=306.10  Aligned_cols=262  Identities=17%  Similarity=0.200  Sum_probs=192.8

Q ss_pred             CCcchhhhhh--ccCCCcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhcccc
Q 013230          120 APTKLLDLFS--KYSDPENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHL  191 (447)
Q Consensus       120 ~~~~~~~~~~--~y~~~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~  191 (447)
                      .|+..++.+.  ||   +++++||+|+||+||+|++      ||||+++.+.         ...+.+.+|+.+++.++| 
T Consensus         2 ~p~~~g~~~~~~rY---~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~---------~~~~~~~~Ei~~l~~l~~-   68 (362)
T d1q8ya_           2 HPAFKGEPYKDARY---ILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK---------VYTEAAEDEIKLLQRVND-   68 (362)
T ss_dssp             CCCCTTCEETTTTE---EEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH---------HHHHHHHHHHHHHHHHHH-
T ss_pred             CCCCCCCCccCCcE---EEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccc---------cchHHHHHHHHHHHHhcc-
Confidence            3566667654  45   9999999999999999974      9999987431         233567899999999988 


Q ss_pred             ccCCCCCCC-------cccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhh
Q 013230          192 RRNEGDTLN-------ACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESF  264 (447)
Q Consensus       192 ~~~~~~~~n-------~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~  264 (447)
                             +|       .|++||++++++...+                            ....+++|+++..+.+....
T Consensus        69 -------~~~~~~~~~~~~~iv~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~  113 (362)
T d1q8ya_          69 -------ADNTKEDSMGANHILKLLDHFNHKG----------------------------PNGVHVVMVFEVLGENLLAL  113 (362)
T ss_dssp             -------TCCSHHHHHHHTTBCCCCEEEEEEE----------------------------TTEEEEEEEECCCCEEHHHH
T ss_pred             -------hhhhhhhhcCcCceEEEEEEeeecc----------------------------ccceeeeeeecccccccccc
Confidence                   44       2567999999976544                            35578888888765343333


Q ss_pred             hc------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccce
Q 013230          265 VL------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLS  338 (447)
Q Consensus       265 i~------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla  338 (447)
                      ..      +++..++.++.||+.||+|||+..||+||||||+|||++.++...              .-..+||+|||.|
T Consensus       114 ~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~~~--------------~~~~~kl~dfg~s  179 (362)
T d1q8ya_         114 IKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPE--------------NLIQIKIADLGNA  179 (362)
T ss_dssp             HHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTT--------------TEEEEEECCCTTC
T ss_pred             cccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCChhHeeeeccCccc--------------ccceeeEeecccc
Confidence            32      899999999999999999999768999999999999998775200              0015899999999


Q ss_pred             eecCCC--CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHH------HHHHH---HHHh------
Q 013230          339 RINTGE--DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLW------LVYLV---DMLL------  401 (447)
Q Consensus       339 ~~~~~~--g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~------~~~~~---~~l~------  401 (447)
                      +.....  ..+....|++||++.+...+.+.|+|+ +|++..+++.|..||.....      ...+.   ..+.      
T Consensus       180 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwS-lG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~~  258 (362)
T d1q8ya_         180 CWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWS-TACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYL  258 (362)
T ss_dssp             EETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHH-HHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHH
T ss_pred             cccccccccccccccccChhhccccCCCccccccc-hHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHhCCCCHHH
Confidence            876543  223445689999998888888889999 99999999999888742210      00000   0000      


Q ss_pred             -h------------------------------ccCCCCCccchHHHHHHHHHhcccc-----CHHHHHcCCCCCCCCCC
Q 013230          402 -L------------------------------KKTFDRSSKDERDLRSLKKRLDKYN-----SAKEAIFDPFFSDLIVD  444 (447)
Q Consensus       402 -~------------------------------~~~~~~~~~~s~~l~dLl~~mL~~d-----sa~elL~HPff~~~~~~  444 (447)
                       .                              ...+......+++++|||.+||++|     ||+|||+||||++....
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~Hp~f~~~~~~  337 (362)
T d1q8ya_         259 LRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLGM  337 (362)
T ss_dssp             HHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCTTC
T ss_pred             hhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhcCcccCCCCCc
Confidence             0                              0011223456899999999999999     99999999999976443

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-37  Score=299.40  Aligned_cols=234  Identities=18%  Similarity=0.177  Sum_probs=187.3

Q ss_pred             eEEeccccceEEEEece---------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          137 IVKVGEGTFGEAFLAGN---------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       137 ~~~LG~G~fG~V~~a~~---------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      -++||+|+||+||+|+.         ||||++...       ......+++.+|+.+|++|+|        ||    ||+
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~-------~~~~~~~~~~~E~~~l~~l~H--------pn----Iv~   92 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI-------TDIGEVSQFLTEGIIMKDFSH--------PN----VLS   92 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCC-------CCHHHHHHHHHHHHHHHTCCC--------TT----BCC
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcc-------cCHHHHHHHHHHHHHHHhCCC--------CC----EeE
Confidence            47899999999999972         889988632       233345789999999999998        88    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++..                             .+..+|+|||||.+| +|.+++.     +++..+..++.|++.|
T Consensus        93 ~~g~~~~-----------------------------~~~~~~lv~E~~~~g-~l~~~~~~~~~~~~~~~~~~i~~qia~g  142 (311)
T d1r0pa_          93 LLGICLR-----------------------------SEGSPLVVLPYMKHG-DLRNFIRNETHNPTVKDLIGFGLQVAKG  142 (311)
T ss_dssp             CCEEEEE-----------------------------TTTEEEEEEECCTTC-BHHHHHHCTTCCCBHHHHHHHHHHHHHH
T ss_pred             EeEEEEe-----------------------------cCCceEEEEEEeecC-chhhhhccccccchHHHHHHHHHHHHHh
Confidence            9998643                             135689999999998 9998876     7788899999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC---------CEEEEecCC
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE---------DIFFLDLSQ  353 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~---------g~i~~~~~~  353 (447)
                      |.|||+ .+|+||||||+|||++.++                    .+||+|||+|+.....         +......|+
T Consensus       143 L~~lH~-~~iiHrDLK~~NILl~~~~--------------------~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~  201 (311)
T d1r0pa_         143 MKFLAS-KKFVHRDLAARNCMLDEKF--------------------TVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWM  201 (311)
T ss_dssp             HHHHHH-TTCCCSCCSGGGEEECTTC--------------------CEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGS
T ss_pred             hhhhcc-cCcccCCccHHhEeECCCC--------------------CEEEecccchhhccccccccceeccccccccccc
Confidence            999999 9999999999999999887                    7999999999875433         222345589


Q ss_pred             CCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhcccc-----C
Q 013230          354 DPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLKKRLDKYN-----S  428 (447)
Q Consensus       354 ~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl~~mL~~d-----s  428 (447)
                      +||.+.+...+.+.|||+ +|.+.+++.++..|+............+......+.+...++++.+||.+||..|     |
T Consensus       202 aPE~~~~~~~~~ksDI~S-fGivl~El~t~~~p~~~~~~~~~~~~~i~~g~~~~~p~~~~~~l~~li~~cl~~dP~~RPs  280 (311)
T d1r0pa_         202 ALESLQTQKFTTKSDVWS-FGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPS  280 (311)
T ss_dssp             CHHHHHHCCCCHHHHHHH-HHHHHHHHHTTSCCSCC------CHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred             ChHHHhcCCCCChhHhhh-hHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCcccCcHHHHHHHHHHcCCCHhHCcC
Confidence            999888777888889999 9999999998777765543333333334444555566778999999999999999     9


Q ss_pred             HHHHHcC------CCCCCC
Q 013230          429 AKEAIFD------PFFSDL  441 (447)
Q Consensus       429 a~elL~H------Pff~~~  441 (447)
                      +.|+++|      +|..+.
T Consensus       281 ~~ei~~~L~~i~~~~~~~~  299 (311)
T d1r0pa_         281 FSELVSRISAIFSTFIGEH  299 (311)
T ss_dssp             HHHHHHHHHHHHHTCCSCC
T ss_pred             HHHHHHHHHHHHHhhhhhh
Confidence            9999988      666653

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-37  Score=299.94  Aligned_cols=234  Identities=20%  Similarity=0.203  Sum_probs=191.1

Q ss_pred             CcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcc
Q 013230          134 PENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNAC  202 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~  202 (447)
                      |++.++||+|+||+||+|.           .||||++....       ..+....+.+|+.++++++|        ||  
T Consensus        22 ~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~-------~~~~~~~~~~E~~il~~l~h--------~n--   84 (308)
T d1p4oa_          22 ITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA-------SMRERIEFLNEASVMKEFNC--------HH--   84 (308)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS-------CHHHHHHHHHHHHHGGGCCC--------TT--
T ss_pred             eEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECccc-------ChHHHHHHHHHHHHHHHcCC--------CC--
Confidence            4999999999999999985           28999876332       22334568999999999998        88  


Q ss_pred             cceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------------CC
Q 013230          203 TTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------------LN  268 (447)
Q Consensus       203 ~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------------l~  268 (447)
                        ||++++++..                              ++.+++|||||.+| +|.+++.              ++
T Consensus        85 --Iv~~~~~~~~------------------------------~~~~~lv~e~~~~g-~l~~~~~~~~~~~~~~~~~~~~~  131 (308)
T d1p4oa_          85 --VVRLLGVVSQ------------------------------GQPTLVIMELMTRG-DLKSYLRSLRPAMANNPVLAPPS  131 (308)
T ss_dssp             --BCCEEEEECS------------------------------SSSCEEEEECCTTC-BHHHHHHHHHHHHHHCTTCCCCC
T ss_pred             --EeeeeeEEec------------------------------CCceeEEEeecCCC-CHHHHHHhcccccccccccCCCC
Confidence              9999998532                              56699999999999 9998864              57


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC----
Q 013230          269 INEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE----  344 (447)
Q Consensus       269 ~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~----  344 (447)
                      ...+..++.|++.||.|||+ ++|+||||||+|||++.+.                    .+||+|||+|+.....    
T Consensus       132 ~~~~~~i~~~ia~gl~~LH~-~~ivHrDlk~~NiLld~~~--------------------~~Kl~DFGla~~~~~~~~~~  190 (308)
T d1p4oa_         132 LSKMIQMAGEIADGMAYLNA-NKFVHRDLAARNCMVAEDF--------------------TVKIGDFGMTRDIYETDYYR  190 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TTCBCSCCSGGGEEECTTC--------------------CEEECCTTCCCGGGGGGCEE
T ss_pred             HHHHHHHHHHHHHHHHHHhh-CCeeeceEcCCceeecCCc--------------------eEEEeecccceeccCCccee
Confidence            88899999999999999999 9999999999999999887                    7999999999865433    


Q ss_pred             ---CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCC-CCCChhHHHHHHHHHHhhccCCCCCccchHHHHHHH
Q 013230          345 ---DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGS-FPKTNVLWLVYLVDMLLLKKTFDRSSKDERDLRSLK  420 (447)
Q Consensus       345 ---g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~-~p~~~~~~~~~~~~~l~~~~~~~~~~~~s~~l~dLl  420 (447)
                         .......|++||.+.+.....+.|+|+ +|.+.++++++. .|+......+.+.. +......+.+...++++.+||
T Consensus       191 ~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S-~G~il~El~t~~~~p~~~~~~~~~~~~-i~~~~~~~~p~~~~~~l~~li  268 (308)
T d1p4oa_         191 KGGKGLLPVRWMSPESLKDGVFTTYSDVWS-FGVVLWEIATLAEQPYQGLSNEQVLRF-VMEGGLLDKPDNCPDMLFELM  268 (308)
T ss_dssp             GGGSSEECGGGCCHHHHHHCCCCHHHHHHH-HHHHHHHHHHTSCCTTTTSCHHHHHHH-HHTTCCCCCCTTCCHHHHHHH
T ss_pred             eccceecccccCCHHHHccCCCCccccccc-HHHHHHHHHhCCCCCCCCCCHHHHHHH-HHhCCCCCCcccchHHHHHHH
Confidence               124556699999998878888889999 999999999875 56655444443333 333445566678899999999


Q ss_pred             HHhcccc-----CHHHHHc------CCCCCC
Q 013230          421 KRLDKYN-----SAKEAIF------DPFFSD  440 (447)
Q Consensus       421 ~~mL~~d-----sa~elL~------HPff~~  440 (447)
                      .+||++|     |+.|+++      +|+|++
T Consensus       269 ~~cl~~~P~~RPs~~~il~~L~~~~~~~~~~  299 (308)
T d1p4oa_         269 RMCWQYNPKMRPSFLEIISSIKEEMEPGFRE  299 (308)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHGGGSCTTHHH
T ss_pred             HHHcCCChhHCcCHHHHHHHHHHhcCCCCcC
Confidence            9999999     9999987      888864

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-37  Score=299.36  Aligned_cols=228  Identities=21%  Similarity=0.248  Sum_probs=181.8

Q ss_pred             CcceEEeccccceEEEEece-------------eEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCC
Q 013230          134 PENIVKVGEGTFGEAFLAGN-------------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTL  199 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~-------------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~  199 (447)
                      |+++++||+|+||.||+|+.             ||+|++..+.       .......+.+|+.++.++ +|        |
T Consensus        15 ~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~-------~~~~~~~~~~e~~~l~~~~~H--------p   79 (299)
T d1fgka_          15 LVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA-------TEKDLSDLISEMEMMKMIGKH--------K   79 (299)
T ss_dssp             EEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTC-------CHHHHHHHHHHHHHHHHHCCC--------T
T ss_pred             eEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECccc-------ChHHHHHHHHHHHHHHHhcCC--------C
Confidence            49999999999999999972             8899876432       233456788999999888 56        7


Q ss_pred             CcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-------------
Q 013230          200 NACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-------------  266 (447)
Q Consensus       200 n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-------------  266 (447)
                      |    ||++++++..                              ++.+|+|||||.+| +|.+++.             
T Consensus        80 n----Iv~~~~~~~~------------------------------~~~~~~v~e~~~~g-~l~~~i~~~~~~~~~~~~~~  124 (299)
T d1fgka_          80 N----IINLLGACTQ------------------------------DGPLYVIVEYASKG-NLREYLQARRPPGLEYSYNP  124 (299)
T ss_dssp             T----BCCEEEEECS------------------------------SSSCEEEECCCTTC-BHHHHHHTTSCC--------
T ss_pred             e----EEeccccccc------------------------------CCeEEEEEEccCCC-cHHHHHHhhcCCcccccccc
Confidence            7    9999999542                              56799999999999 9999873             


Q ss_pred             -------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeecccee
Q 013230          267 -------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSR  339 (447)
Q Consensus       267 -------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~  339 (447)
                             +++..++.++.||+.||+|||+ ++||||||||+|||++.++                    .+||+|||+++
T Consensus       125 ~~~~~~~l~~~~~~~~~~qi~~al~ylH~-~~ivHrDiKp~NiLl~~~~--------------------~~kl~dfg~~~  183 (299)
T d1fgka_         125 SHNPEEQLSSKDLVSCAYQVARGMEYLAS-KKCIHRDLAARNVLVTEDN--------------------VMKIADFGLAR  183 (299)
T ss_dssp             ----CCCCCHHHHHHHHHHHHHHHHHHHH-TTCCCSCCSGGGEEECTTC--------------------CEEECSTTCCC
T ss_pred             ccCccccCCHHHHHHHHHHHHHHHHHhhh-CCEEeeeecccceeecCCC--------------------CeEeccchhhc
Confidence                   7999999999999999999999 9999999999999999998                    79999999998


Q ss_pred             ecCCCC-------EEEEecCCCCCCCCCCCCCchHHHHHhhccCCccccc-CCCCCChhHHHHHHHHHHhhccCCCCCcc
Q 013230          340 INTGED-------IFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWE-GSFPKTNVLWLVYLVDMLLLKKTFDRSSK  411 (447)
Q Consensus       340 ~~~~~g-------~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~~~~  411 (447)
                      ......       ......|++||.+.+..++.+.|||+ +|++.+++++ +..|+....... +...+.....++.+..
T Consensus       184 ~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS-~Gvvl~ell~~g~~p~~~~~~~~-~~~~i~~~~~~~~p~~  261 (299)
T d1fgka_         184 DIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWS-FGVLLWEIFTLGGSPYPGVPVEE-LFKLLKEGHRMDKPSN  261 (299)
T ss_dssp             CGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHH-HHHHHHHHHTTSCCSSTTCCHHH-HHHHHHTTCCCCCCSS
T ss_pred             cccccccccccccCCCChhhhhhhHhcCCCCCchhhhHH-hHHHHHHhccCCCCCCCCCCHHH-HHHHHHcCCCCCCCcc
Confidence            764331       12233488999888878888889999 9999999997 567776543333 3344444456666778


Q ss_pred             chHHHHHHHHHhcccc-----CHHHHHc
Q 013230          412 DERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       412 ~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      +++++++||.+||++|     ||.|+++
T Consensus       262 ~~~~l~~li~~cl~~dP~~Rps~~eil~  289 (299)
T d1fgka_         262 CTNELYMMMRDCWHAVPSQRPTFKQLVE  289 (299)
T ss_dssp             CCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             chHHHHHHHHHHccCCHhHCcCHHHHHH
Confidence            9999999999999999     9999986

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=297.35  Aligned_cols=230  Identities=18%  Similarity=0.163  Sum_probs=184.5

Q ss_pred             CCcceEEeccccceEEEEec-----------eeEEEEEecCCCcccccccccchHHHHHHHHHHHhc-cccccCCCCCCC
Q 013230          133 DPENIVKVGEGTFGEAFLAG-----------NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTL-NHLRRNEGDTLN  200 (447)
Q Consensus       133 ~~~~~~~LG~G~fG~V~~a~-----------~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L-~h~~~~~~~~~n  200 (447)
                      +|++.++||+|+||.||+|+           .||+|++....       .......+.+|+.+++++ +|        ||
T Consensus        24 ~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~-------~~~~~~~~~~E~~~~~~l~~H--------pn   88 (311)
T d1t46a_          24 RLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA-------HLTEREALMSELKVLSYLGNH--------MN   88 (311)
T ss_dssp             GEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC-------CHHHHHHHHHHHHHHHHHCCC--------TT
T ss_pred             HeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECccc-------CHHHHHHHHHHHHHHHhccCC--------CC
Confidence            34999999999999999995           38999987542       223345789999999999 46        77


Q ss_pred             cccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc--------------
Q 013230          201 ACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL--------------  266 (447)
Q Consensus       201 ~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~--------------  266 (447)
                          ||++++++.                              .++.+|+|||||.+| +|.+++.              
T Consensus        89 ----Iv~~~g~~~------------------------------~~~~~~lvmE~~~~g-~l~~~l~~~~~~~~~~~~~~~  133 (311)
T d1t46a_          89 ----IVNLLGACT------------------------------IGGPTLVITEYCCYG-DLLNFLRRKRDSFICSKTSPA  133 (311)
T ss_dssp             ----BCCEEEEEC------------------------------SSSSCEEEEECCTTE-EHHHHHHHTTTTC--------
T ss_pred             ----EEEEEEEEe------------------------------eCCEEEEEEEcCCCC-CHHHHHHhccccccccccccc
Confidence                999999943                              256699999999998 9988863              


Q ss_pred             --------CCHHHHHHHHHHHHHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccce
Q 013230          267 --------LNINEARSLLVQVTAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLS  338 (447)
Q Consensus       267 --------l~~~~~~~i~~Qil~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla  338 (447)
                              +++..++.++.||+.||+|||+ ++||||||||+|||++.++                    .+||+|||+|
T Consensus       134 ~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~-~~ivHrDLKp~NIl~~~~~--------------------~~ki~DfG~~  192 (311)
T d1t46a_         134 IMEDDELALDLEDLLSFSYQVAKGMAFLAS-KNCIHRDLAARNILLTHGR--------------------ITKICDFGLA  192 (311)
T ss_dssp             ------CCCCHHHHHHHHHHHHHHHHHHHH-TTCCCSCCSGGGEEEETTT--------------------EEEECCCGGG
T ss_pred             cccccccCCCHHHHHHHHHHHHHHHHHHHh-CCeeecccccccccccccC--------------------cccccccchh
Confidence                    7889999999999999999999 9999999999999999987                    8999999999


Q ss_pred             eecCCC-------CEEEEecCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCC-CChhHHHHHHHHHHhhccCCCCCc
Q 013230          339 RINTGE-------DIFFLDLSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFP-KTNVLWLVYLVDMLLLKKTFDRSS  410 (447)
Q Consensus       339 ~~~~~~-------g~i~~~~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p-~~~~~~~~~~~~~l~~~~~~~~~~  410 (447)
                      +.....       ++.....|++||.+.+...+.+.|||+ +|++.++++++..| +........+.+.+........+.
T Consensus       193 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS-~G~~l~ellt~g~p~~~~~~~~~~~~~~i~~~~~~~~~~  271 (311)
T d1t46a_         193 RDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWS-YGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPE  271 (311)
T ss_dssp             SCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHH-HHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCCCCCT
T ss_pred             eeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccc-hHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCcc
Confidence            876433       334556689999998777888889999 99999999985444 433222222333443334445556


Q ss_pred             cchHHHHHHHHHhcccc-----CHHHHHc
Q 013230          411 KDERDLRSLKKRLDKYN-----SAKEAIF  434 (447)
Q Consensus       411 ~~s~~l~dLl~~mL~~d-----sa~elL~  434 (447)
                      ..++++.+||.+||.+|     |++|+++
T Consensus       272 ~~~~~l~~Li~~cl~~dP~~RPs~~~il~  300 (311)
T d1t46a_         272 HAPAEMYDIMKTCWDADPLKRPTFKQIVQ  300 (311)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             cccHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence            78999999999999999     9999875

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.1e-34  Score=282.04  Aligned_cols=234  Identities=15%  Similarity=0.103  Sum_probs=173.7

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+++++||+|+||+||+|++      ||||++.....          ...+.+|+++++.++|        +|   +|+.
T Consensus         9 Y~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~----------~~~~~~E~~i~~~l~~--------~~---~i~~   67 (299)
T d1ckia_           9 YRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK----------HPQLHIESKIYKMMQG--------GV---GIPT   67 (299)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT----------SCCHHHHHHHHHHSTT--------ST---TCCC
T ss_pred             EEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc----------CHHHHHHHHHHHHccC--------CC---cccE
Confidence            49999999999999999973      99998875421          1246889999999988        54   1444


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +.+++..                              .+..++||||+. | +|...+.     +++..++.++.|++.|
T Consensus        68 ~~~~~~~------------------------------~~~~~ivme~~~-~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~  115 (299)
T d1ckia_          68 IRWCGAE------------------------------GDYNVMVMELLG-P-SLEDLFNFCSRKFSLKTVLLLADQMISR  115 (299)
T ss_dssp             EEEEEEE------------------------------TTEEEEEEECCC-C-BHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred             EEEEEec------------------------------CCEEEEEEEEcC-C-chhhhhhhccCCCcHHHHHHHHHHHHHH
Confidence            4444322                              456899999995 4 5555543     9999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------------CEEEEe
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------------DIFFLD  350 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------------g~i~~~  350 (447)
                      |+|||+ +|||||||||+|||++..+.                 +..+||+|||+|+.....            ..+...
T Consensus       116 l~~lH~-~~iiHrDiKp~NIl~~~~~~-----------------~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~  177 (299)
T d1ckia_         116 IEYIHS-KNFIHRDVKPDNFLMGLGKK-----------------GNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTA  177 (299)
T ss_dssp             HHHHHH-TTEECSCCCGGGEEECCGGG-----------------TTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCS
T ss_pred             HHHHHH-CCeeeccCCHhhccccccCC-----------------CceeeeeccCcceeccccccccceeccccCCcCCCc
Confidence            999999 99999999999999876431                 126999999999976432            223455


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhHHHH---HHHHHHhhccCCCC---CccchHHHHHHHHHhc
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVLWLV---YLVDMLLLKKTFDR---SSKDERDLRSLKKRLD  424 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~~~~---~~~~~l~~~~~~~~---~~~~s~~l~dLl~~mL  424 (447)
                      .|++||.+.+...+.+.|||+ +|++.+++.+|..|+.......   ............+.   ...+++++.+||++||
T Consensus       178 ~y~aPE~~~~~~~~~~~DiwS-lG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~li~~cl  256 (299)
T d1ckia_         178 RYASINTHLGIEQSRRDDLES-LGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCR  256 (299)
T ss_dssp             SSCCHHHHTTBCCCHHHHHHH-HHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHH
T ss_pred             cccCHHHHhCCCCCChhhEEe-cCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCCChhHhccCCCHHHHHHHHHHc
Confidence            699999999988888889999 9999999999998885431111   01111100111111   2457899999999999


Q ss_pred             ccc-----CH---HHHHcCCCCC
Q 013230          425 KYN-----SA---KEAIFDPFFS  439 (447)
Q Consensus       425 ~~d-----sa---~elL~HPff~  439 (447)
                      ..|     ++   .++|+|+|.+
T Consensus       257 ~~~p~~RP~~~~i~~~l~~~~~~  279 (299)
T d1ckia_         257 SLRFDDKPDYSYLRQLFRNLFHR  279 (299)
T ss_dssp             HSCTTCCCCHHHHHHHHHHHHHH
T ss_pred             cCChhHCcCHHHHHHHHHHHHHH
Confidence            999     55   4678888764

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=2.2e-33  Score=272.54  Aligned_cols=224  Identities=16%  Similarity=0.123  Sum_probs=168.8

Q ss_pred             CcceEEeccccceEEEEece------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAGN------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~~------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |+++++||+|+||+||+|++      ||+|++.....          ...+.+|+++++.|.|.       +|    ++.
T Consensus         7 Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~----------~~~~~~e~~~~~~l~~~-------~~----i~~   65 (293)
T d1csna_           7 YKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD----------APQLRDEYRTYKLLAGC-------TG----IPN   65 (293)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT----------SCCHHHHHHHHHHTTTC-------TT----CCC
T ss_pred             eEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccC----------cHHHHHHHHHHHHhcCC-------CC----CCE
Confidence            59999999999999999973      99998864421          12467899999999872       33    778


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc-----CCHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL-----LNINEARSLLVQVTAG  282 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~-----l~~~~~~~i~~Qil~g  282 (447)
                      +++++..                              ....|+||||| +| +|.+++.     ++...+..++.|++.|
T Consensus        66 ~~~~~~~------------------------------~~~~~~vme~~-~~-~l~~~~~~~~~~~~~~~~~~i~~q~~~~  113 (293)
T d1csna_          66 VYYFGQE------------------------------GLHNVLVIDLL-GP-SLEDLLDLCGRKFSVKTVAMAAKQMLAR  113 (293)
T ss_dssp             EEEEEEE------------------------------TTEEEEEEECC-CC-BHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred             EEEEeec------------------------------CCccEEEEEec-CC-CHHHHHHhhccchhhHHHHHHHHHHHHH
Confidence            8877544                              56689999999 46 8888875     8999999999999999


Q ss_pred             HHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCC------------CEEEEe
Q 013230          283 LAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGE------------DIFFLD  350 (447)
Q Consensus       283 L~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~------------g~i~~~  350 (447)
                      |+|||+ +|||||||||+|||++....               .....+||+|||+|+.....            ..+.+.
T Consensus       114 l~~lH~-~giiHrDiKp~Nili~~~~~---------------~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~  177 (293)
T d1csna_         114 VQSIHE-KSLVYRDIKPDNFLIGRPNS---------------KNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTA  177 (293)
T ss_dssp             HHHHHT-TTEECCCCCGGGEEECCSSS---------------TTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCT
T ss_pred             HHHHHH-CCceeccCCccceeecCccc---------------ccCCceEEcccceeEEcccCccccceeecccCceEEch
Confidence            999999 99999999999999986421               00116999999999875432            223456


Q ss_pred             cCCCCCCCCCCCCCchHHHHHhhccCCcccccCCCCCChhH---HHHHHHHHHhhccCCCC---CccchHHHHHHHHHhc
Q 013230          351 LSQDPELFSGPKGDKQFDTYRKMKKVTEDQWEGSFPKTNVL---WLVYLVDMLLLKKTFDR---SSKDERDLRSLKKRLD  424 (447)
Q Consensus       351 ~~~~pelf~g~~~~~~~di~s~lg~~~~~~~~~~~p~~~~~---~~~~~~~~l~~~~~~~~---~~~~s~~l~dLl~~mL  424 (447)
                      .|++||.+.+...+.+.|||+ +|.+.+++++|..|+....   .......+...+...+.   ...+++++.+++..|+
T Consensus       178 ~y~aPE~~~~~~~~~~~DiwS-lG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~ii~~~~  256 (293)
T d1csna_         178 RYMSINTHLGREQSRRDDLEA-LGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYAR  256 (293)
T ss_dssp             TTCCHHHHTTCCCCHHHHHHH-HHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHH
T ss_pred             hhcCHHHhcCCCCChHHHHHH-hhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCCCChHHhcCCCCHHHHHHHHHHh
Confidence            699999999988888889999 9999999999999985321   11111111100111111   2346789999999998


Q ss_pred             ccc
Q 013230          425 KYN  427 (447)
Q Consensus       425 ~~d  427 (447)
                      ..+
T Consensus       257 ~~~  259 (293)
T d1csna_         257 NLA  259 (293)
T ss_dssp             HCC
T ss_pred             cCC
Confidence            876

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-34  Score=277.85  Aligned_cols=231  Identities=17%  Similarity=0.146  Sum_probs=168.1

Q ss_pred             CcceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHH--HHHhccccccCCCCCCCcccceee
Q 013230          134 PENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVV--LSWTLNHLRRNEGDTLNACTTFVE  207 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~--il~~L~h~~~~~~~~~n~~~~iv~  207 (447)
                      |.+.++||+|+||.||+|+    .||+|++....           .....+|.+  .+..++|        ||    ||+
T Consensus         5 ~~l~~~iG~G~fg~Vy~~~~~g~~vAvK~~~~~~-----------~~~~~~e~ei~~~~~~~H--------pn----Iv~   61 (303)
T d1vjya_           5 IVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSRE-----------ERSWFREAEIYQTVMLRH--------EN----ILG   61 (303)
T ss_dssp             EEEEEEEECCSSSEEEEEEETTEEEEEEEECGGG-----------HHHHHHHHHHHTSTTCCC--------TT----BCC
T ss_pred             EEEEEEEeeCCCeEEEEEEECCEEEEEEEECccc-----------hhHHHHHHHHHHHhhCCC--------Cc----Ccc
Confidence            4788999999999999998    49999886331           123344444  4456666        77    999


Q ss_pred             eeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhc---CCHHHHHHHHHHHHHHHH
Q 013230          208 MFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVL---LNINEARSLLVQVTAGLA  284 (447)
Q Consensus       208 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~---l~~~~~~~i~~Qil~gL~  284 (447)
                      +++++...+.                          ....+|+|||||.+| +|.+++.   +++.....++.|++.||+
T Consensus        62 ~~~~~~~~~~--------------------------~~~~~~lv~Ey~~~g-~L~~~l~~~~l~~~~~~~~~~~ia~gl~  114 (303)
T d1vjya_          62 FIAADNKDNG--------------------------TWTQLWLVSDYHEHG-SLFDYLNRYTVTVEGMIKLALSTASGLA  114 (303)
T ss_dssp             EEEEEEEECS--------------------------SSEEEEEEEECCTTC-BHHHHHHHCCBCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCC--------------------------cceEEEEEEecccCC-CHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            9999765331                          123589999999998 9999988   899999999999999999


Q ss_pred             HHHH-------hCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCCCC---------EEE
Q 013230          285 VAEA-------AYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTGED---------IFF  348 (447)
Q Consensus       285 ylH~-------~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~~g---------~i~  348 (447)
                      |+|+       ..|||||||||+||||+.++                    .+||+|||+|+......         .+.
T Consensus       115 ~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~--------------------~~Kl~DFGl~~~~~~~~~~~~~~~~~~~g  174 (303)
T d1vjya_         115 HLHMEIVGTQGKPAIAHRDLKSKNILVKKNG--------------------TCCIADLGLAVRHDSATDTIDIAPNHRVG  174 (303)
T ss_dssp             HHHCCBCSTTCBCEEECSCCCGGGEEECTTS--------------------CEEECCCTTCEEEETTTTEECC----CCS
T ss_pred             HHHHhhhhhccCCCeeccccCccceEEcCCC--------------------CeEEEecCccccccCCCcceeccccceec
Confidence            9996       25999999999999999987                    79999999998764431         122


Q ss_pred             EecCCCCCCCCCCCC------CchHHHHHhhccCCcccccCCCCCCh----------h----HHHHHHHHHHhhccC-CC
Q 013230          349 LDLSQDPELFSGPKG------DKQFDTYRKMKKVTEDQWEGSFPKTN----------V----LWLVYLVDMLLLKKT-FD  407 (447)
Q Consensus       349 ~~~~~~pelf~g~~~------~~~~di~s~lg~~~~~~~~~~~p~~~----------~----~~~~~~~~~l~~~~~-~~  407 (447)
                      ...|++||++.+...      +.+.|||+ +|++.++++++..|+..          .    .......+....... .+
T Consensus       175 t~~y~aPE~~~~~~~~~~~~~~~k~Di~S-~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  253 (303)
T d1vjya_         175 TKRYMAPEVLDDSINMKHFESFKRADIYA-MGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPN  253 (303)
T ss_dssp             CGGGCCHHHHTTCSCTTCHHHHHHHHHHH-HHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCC
T ss_pred             ccCcCChhhccccccccCCCcCcchhhhh-hHHHHHHHhhCCCCCCcccccccchhhcccccchHHHHHHHHhccccCCC
Confidence            345899999877532      23459999 99999999887644311          0    011122222221111 11


Q ss_pred             CC-----ccchHHHHHHHHHhcccc-----CHHHHHcC
Q 013230          408 RS-----SKDERDLRSLKKRLDKYN-----SAKEAIFD  435 (447)
Q Consensus       408 ~~-----~~~s~~l~dLl~~mL~~d-----sa~elL~H  435 (447)
                      .+     .....++.+|+.+||+.|     |+.|++++
T Consensus       254 ~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~  291 (303)
T d1vjya_         254 IPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKT  291 (303)
T ss_dssp             CCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHH
T ss_pred             CCcccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHH
Confidence            11     123467999999999999     99998763

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.88  E-value=7.9e-23  Score=184.91  Aligned_cols=137  Identities=18%  Similarity=0.116  Sum_probs=100.7

Q ss_pred             cceEEeccccceEEEEece-----eEEEEEecCCCcccc------cc----cccchHHHHHHHHHHHhccccccCCCCCC
Q 013230          135 ENIVKVGEGTFGEAFLAGN-----TVCKVVPIDGDLKVN------GE----AQKKSEELLEEVVLSWTLNHLRRNEGDTL  199 (447)
Q Consensus       135 ~~~~~LG~G~fG~V~~a~~-----vAiK~i~~~~~~~~~------~~----~~~~~~~~~~Ei~il~~L~h~~~~~~~~~  199 (447)
                      .+.++||+|+||+||+|++     ||+|+++........      ..    .........+|...+.++.|        .
T Consensus         3 ~vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~--------~   74 (191)
T d1zara2           3 AIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQG--------L   74 (191)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTT--------S
T ss_pred             hhCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccC--------C
Confidence            5679999999999999973     999987643210000      00    00112334568888888877        6


Q ss_pred             CcccceeeeeeEEEEeCCCchHHHHHhhhcccccCCCCCCCCCCCCCceEEEEEEecCccchhhhhcCCHHHHHHHHHHH
Q 013230          200 NACTTFVEMFEIKVCQGPYDAALIQAWEDWDDKHCSENDNPKEFPENQRYIVFVLQHGGKDLESFVLLNINEARSLLVQV  279 (447)
Q Consensus       200 n~~~~iv~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ivmE~~~gG~~L~~~i~l~~~~~~~i~~Qi  279 (447)
                      +    ++..+++                                  ...+++|||+.++ .+.+   ++...+..++.|+
T Consensus        75 ~----v~~~~~~----------------------------------~~~~lvme~~~~~-~~~~---l~~~~~~~i~~ql  112 (191)
T d1zara2          75 A----VPKVYAW----------------------------------EGNAVLMELIDAK-ELYR---VRVENPDEVLDMI  112 (191)
T ss_dssp             S----SCCEEEE----------------------------------ETTEEEEECCCCE-EGGG---CCCSCHHHHHHHH
T ss_pred             C----cceEEEe----------------------------------cCCEEEEEeeccc-cccc---hhhHHHHHHHHHH
Confidence            6    6666655                                  1147999999865 5544   4667778899999


Q ss_pred             HHHHHHHHHhCCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceeecCC
Q 013230          280 TAGLAVAEAAYEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRINTG  343 (447)
Q Consensus       280 l~gL~ylH~~~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~~~~  343 (447)
                      +.||+|||+ +||+||||||+|||++.+                     .++|+|||+|+....
T Consensus       113 ~~~l~~lH~-~giiHrDiKP~NILv~~~---------------------~~~liDFG~a~~~~~  154 (191)
T d1zara2         113 LEEVAKFYH-RGIVHGDLSQYNVLVSEE---------------------GIWIIDFPQSVEVGE  154 (191)
T ss_dssp             HHHHHHHHH-TTEECSCCSTTSEEEETT---------------------EEEECCCTTCEETTS
T ss_pred             HHHHHHHhh-CCEEEccCChhheeeeCC---------------------CEEEEECCCcccCCC
Confidence            999999999 999999999999999865                     589999999876543

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.15  E-value=9e-06  Score=74.19  Aligned_cols=49  Identities=8%  Similarity=-0.070  Sum_probs=31.6

Q ss_pred             CcceEEeccccceEEEEec----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccc
Q 013230          134 PENIVKVGEGTFGEAFLAG----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNH  190 (447)
Q Consensus       134 ~~~~~~LG~G~fG~V~~a~----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h  190 (447)
                      |+.++..+.|+-+.||+..    .+++|......        ......+.+|..++..|..
T Consensus        16 ~~~~~~~~G~s~~~v~rv~~~~~~~vlk~~~~~~--------~~~~~~~~~E~~~l~~l~~   68 (263)
T d1j7la_          16 YRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRY--------KGTTYDVEREKDMMLWLEG   68 (263)
T ss_dssp             SEEEECSCCCSSSEEEEEECSSCEEEEEEECGGG--------TTSTTCHHHHHHHHHHHTT
T ss_pred             eEEEEcCCCCCCCcEEEEEeCCCeEEEEEcCCCc--------ccchhhHHHHHHHHHHHhc
Confidence            3666665555567899875    38888765321        1123456889999888853

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=97.71  E-value=5.9e-05  Score=73.51  Aligned_cols=53  Identities=17%  Similarity=0.107  Sum_probs=33.0

Q ss_pred             ceEEeccccceEEEEec------eeEEEEEecCCCccccccc-ccchHHHHHHHHHHHhccc
Q 013230          136 NIVKVGEGTFGEAFLAG------NTVCKVVPIDGDLKVNGEA-QKKSEELLEEVVLSWTLNH  190 (447)
Q Consensus       136 ~~~~LG~G~fG~V~~a~------~vAiK~i~~~~~~~~~~~~-~~~~~~~~~Ei~il~~L~h  190 (447)
                      .++.||.|....||++.      .+++|.-...  .+..+.. ....++...|...|+.+..
T Consensus        30 ~~~eig~G~~N~vfrV~~~~~~~svivKqa~p~--~r~~g~~~~~~~~R~~~E~~~L~~~~~   89 (392)
T d2pula1          30 TCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPY--AKVVGESWPLTIDRARIESSALIRQGE   89 (392)
T ss_dssp             EEEECCSSSSEEEEEEEC----CEEEEEEECCG--GGC--CCCCCCTTHHHHHHHHHHHHHT
T ss_pred             eEEEeCCCceEeEEEEEeCCCCeEEEEecCCch--hcccCCCCCCCHHHHHHHHHHHHHhhh
Confidence            35789999999999985      2677754321  1112221 2234566789999987753

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.52  E-value=0.00027  Score=63.59  Aligned_cols=30  Identities=17%  Similarity=0.178  Sum_probs=25.1

Q ss_pred             CeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceee
Q 013230          291 EFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRI  340 (447)
Q Consensus       291 ~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~  340 (447)
                      .++|+|+.|.|||++.+.                    .+-|+||+.+..
T Consensus       176 ~liHgD~~~~Nvl~~~~~--------------------~~~iID~~~~~~  205 (255)
T d1nd4a_         176 VVTHGDACLPNIMVENGR--------------------FSGFIDCGRLGV  205 (255)
T ss_dssp             EEECSSCCGGGEEEETTE--------------------EEEECCCTTCEE
T ss_pred             eEEeCCCCCcceEEeCCc--------------------eEEEEEchhccc
Confidence            379999999999998764                    467999997654

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0083  Score=55.99  Aligned_cols=37  Identities=16%  Similarity=0.156  Sum_probs=26.6

Q ss_pred             ceEEEEec-----eeEEEEEecCCCcccccccccchHHHHHHHHHHHhccc
Q 013230          145 FGEAFLAG-----NTVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNH  190 (447)
Q Consensus       145 fG~V~~a~-----~vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h  190 (447)
                      --.||+++     .+++|+.+...         ...+++..|...+..|..
T Consensus        35 EN~vy~v~~~dg~~~VlK~~rp~~---------~s~~~i~~E~~~l~~L~~   76 (325)
T d1zyla1          35 ENRVYQFQDEDRRRFVVKFYRPER---------WTADQILEEHQFALQLVN   76 (325)
T ss_dssp             SSEEEEECCTTCCCEEEEEECTTT---------SCHHHHHHHHHHHHHHHH
T ss_pred             cceeEEEEcCCCCEEEEEEeCCCC---------CCHHHHHHHHHHHHHHHh
Confidence            35799987     38999876321         134668899999999875

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.35  E-value=0.0093  Score=57.21  Aligned_cols=45  Identities=20%  Similarity=0.240  Sum_probs=29.9

Q ss_pred             ceEEeccccceEEEEece-------------eEEEEEecCCCcccccccccchHHHHHHHHHHHhccc
Q 013230          136 NIVKVGEGTFGEAFLAGN-------------TVCKVVPIDGDLKVNGEAQKKSEELLEEVVLSWTLNH  190 (447)
Q Consensus       136 ~~~~LG~G~fG~V~~a~~-------------vAiK~i~~~~~~~~~~~~~~~~~~~~~Ei~il~~L~h  190 (447)
                      .++.|+.|---.+|++..             +.+++..         .. .......+|..+++.+..
T Consensus        46 ~v~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g---------~~-~~~idr~~E~~i~~~ls~  103 (395)
T d1nw1a_          46 RISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYF---------NP-ETESHLVAESVIFTLLSE  103 (395)
T ss_dssp             EEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEEC---------SC-CCHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCccccceEEEEeCCCCccccCCCCcEEEEecC---------Cc-chhhHHHHHHHHHHHHHh
Confidence            357899999999998851             3344332         11 122456789999999876

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.24  E-value=0.013  Score=54.04  Aligned_cols=31  Identities=26%  Similarity=0.316  Sum_probs=26.9

Q ss_pred             CCeeeccCCCCCEEEecCCCccccccccCcccccccCCCcEEEeeccceee
Q 013230          290 YEFEHRDLHWGNVLLSRNDSVTMNFLLDGKQMFVRTFGLSVTIIDFTLSRI  340 (447)
Q Consensus       290 ~~iiHrDLKpeNILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFGla~~  340 (447)
                      .|+||.|+.++|||++.+.                    ..-|+||+.|..
T Consensus       183 ~giIHgDl~~dNvl~~~~~--------------------v~gvIDF~~~~~  213 (316)
T d2ppqa1         183 AGVIHADLFQDNVFFLGDE--------------------LSGLIDFYFACN  213 (316)
T ss_dssp             EEEECSCCCGGGEEEETTE--------------------EEEECCCTTCEE
T ss_pred             cccccCCcchhhhhccccc--------------------ceeEeccccccc
Confidence            6899999999999999875                    457999998754