Query 013234
Match_columns 447
No_of_seqs 233 out of 2321
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 01:46:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03199 delta6-acyl-lipid des 100.0 1.7E-82 3.7E-87 643.5 36.6 420 3-427 21-474 (485)
2 PLN03198 delta6-acyl-lipid des 100.0 3.4E-82 7.4E-87 641.0 34.0 412 5-430 103-521 (526)
3 KOG4232 Delta 6-fatty acid des 100.0 1.7E-70 3.6E-75 518.4 24.4 403 4-427 6-423 (430)
4 cd03506 Delta6-FADS-like The D 100.0 2.4E-43 5.1E-48 321.0 16.4 202 141-402 2-204 (204)
5 PLN02598 omega-6 fatty acid de 100.0 1.3E-39 2.7E-44 321.1 17.5 308 91-423 79-390 (421)
6 PLN02498 omega-3 fatty acid de 100.0 3.1E-39 6.7E-44 315.6 17.6 314 91-423 103-428 (450)
7 PLN02505 omega-6 fatty acid de 100.0 4.6E-38 1E-42 306.2 15.6 318 91-424 32-366 (381)
8 COG3239 DesA Fatty acid desatu 100.0 7E-36 1.5E-40 290.4 20.2 301 91-423 17-321 (343)
9 cd03507 Delta12-FADS-like The 100.0 4.3E-35 9.2E-40 268.9 16.7 218 111-386 5-222 (222)
10 cd03511 Rhizopine-oxygenase-li 100.0 5.9E-35 1.3E-39 279.7 12.6 264 97-399 4-275 (285)
11 PF00487 FA_desaturase: Fatty 100.0 1.9E-34 4.2E-39 271.4 10.0 250 135-407 2-256 (257)
12 PLN02579 sphingolipid delta-4 100.0 2.5E-31 5.4E-36 254.3 24.6 277 87-418 18-304 (323)
13 cd03508 Delta4-sphingolipid-FA 100.0 1.1E-31 2.3E-36 253.9 21.5 269 90-418 3-276 (289)
14 cd03514 CrtR_beta-carotene-hyd 100.0 1.2E-32 2.6E-37 249.7 13.1 187 135-402 20-207 (207)
15 cd03509 DesA_FADS-like Fatty a 100.0 1.1E-30 2.4E-35 247.7 19.0 244 140-418 28-278 (288)
16 cd03510 Rhizobitoxine-FADS-lik 100.0 1.1E-30 2.3E-35 230.5 8.5 162 128-392 10-174 (175)
17 cd03513 CrtW_beta-carotene-ket 100.0 2E-28 4.4E-33 222.7 16.1 188 140-389 33-224 (225)
18 KOG2987 Fatty acid desaturase 99.9 1E-24 2.2E-29 192.3 13.9 269 88-418 26-302 (324)
19 KOG0537 Cytochrome b5 [Energy 99.9 4.2E-24 9.1E-29 174.8 4.5 81 4-84 3-84 (124)
20 cd03512 Alkane-hydroxylase Alk 99.8 7.9E-19 1.7E-23 168.8 16.7 213 133-391 66-285 (314)
21 PF00173 Cyt-b5: Cytochrome b5 99.8 2.5E-20 5.5E-25 141.8 3.6 73 7-79 1-75 (76)
22 KOG0536 Flavohemoprotein b5+b5 99.8 5.4E-20 1.2E-24 146.4 5.0 75 6-80 68-143 (145)
23 cd01060 Membrane-FADS-like The 99.8 1.4E-18 2.9E-23 145.1 6.8 59 152-211 14-72 (122)
24 COG5274 CYB5 Cytochrome b invo 99.6 6.4E-16 1.4E-20 129.9 5.7 76 4-79 48-124 (164)
25 PLN02252 nitrate reductase [NA 99.6 4.6E-16 9.9E-21 167.8 5.0 79 4-82 516-594 (888)
26 KOG4576 Sulfite oxidase, heme- 99.3 1.3E-12 2.8E-17 104.3 4.0 77 4-81 78-158 (167)
27 COG4892 Predicted heme/steroid 98.8 8E-09 1.7E-13 72.8 5.0 72 5-78 1-74 (81)
28 KOG1600 Fatty acid desaturase 98.8 4.3E-08 9.4E-13 91.1 10.5 54 160-215 91-144 (321)
29 COG1398 OLE1 Fatty-acid desatu 98.7 3.5E-08 7.6E-13 89.6 8.7 50 158-209 67-117 (289)
30 PLN02220 delta-9 acyl-lipid de 98.6 2.9E-06 6.3E-11 80.6 16.1 51 160-212 80-130 (299)
31 KOG1110 Putative steroid membr 97.8 2.6E-05 5.6E-10 66.8 4.9 56 3-60 53-112 (183)
32 cd03505 Delta9-FADS-like The D 97.6 0.00053 1.2E-08 60.2 9.6 50 160-211 27-76 (178)
33 KOG1108 Predicted heme/steroid 96.6 0.0022 4.8E-08 57.0 3.6 54 5-61 59-117 (281)
34 PF14901 Jiv90: Cleavage induc 83.4 0.63 1.4E-05 36.0 1.4 15 24-38 59-73 (94)
35 PF13829 DUF4191: Domain of un 70.9 19 0.00042 32.8 7.3 60 90-151 8-67 (224)
36 cd03509 DesA_FADS-like Fatty a 59.5 78 0.0017 30.3 9.6 60 135-204 179-241 (288)
37 PF13239 2TM: 2TM domain 54.6 79 0.0017 23.8 7.2 24 136-159 42-65 (83)
38 cd03512 Alkane-hydroxylase Alk 54.0 61 0.0013 31.4 8.0 11 194-204 265-275 (314)
39 KOG0720 Molecular chaperone (D 53.4 5.6 0.00012 39.8 0.7 16 22-37 379-394 (490)
40 PF10520 Kua-UEV1_localn: Kua- 48.3 67 0.0014 28.3 6.5 37 156-201 100-136 (178)
41 PF00487 FA_desaturase: Fatty 44.5 42 0.00092 30.4 5.2 12 193-204 219-230 (257)
42 COG1398 OLE1 Fatty-acid desatu 40.2 40 0.00086 31.7 4.0 12 193-204 237-248 (289)
43 PLN02434 fatty acid hydroxylas 39.0 1.3E+02 0.0028 27.9 7.1 11 194-204 122-132 (237)
44 PLN02220 delta-9 acyl-lipid de 37.2 1.7E+02 0.0037 28.1 8.0 11 194-204 245-255 (299)
45 PF12683 DUF3798: Protein of u 34.4 30 0.00064 32.5 2.3 51 375-425 136-200 (275)
46 PLN02601 beta-carotene hydroxy 32.2 96 0.0021 29.1 5.1 58 102-163 175-234 (303)
47 COG3239 DesA Fatty acid desatu 32.0 82 0.0018 31.0 5.1 12 193-204 269-280 (343)
48 PF06738 DUF1212: Protein of u 29.7 2.5E+02 0.0055 24.7 7.6 22 129-151 118-139 (193)
49 cd03513 CrtW_beta-carotene-ket 29.6 2.8E+02 0.0061 25.4 7.9 11 194-204 206-216 (225)
50 TIGR00037 eIF_5A translation i 27.9 51 0.0011 27.4 2.4 31 7-42 6-36 (130)
51 PLN02598 omega-6 fatty acid de 27.6 2.3E+02 0.0049 28.8 7.4 26 152-177 293-318 (421)
52 PF15451 DUF4632: Domain of un 26.7 75 0.0016 22.3 2.6 20 421-440 40-59 (71)
53 PF08207 EFP_N: Elongation fac 25.4 39 0.00085 23.6 1.1 25 21-45 8-32 (58)
54 PHA01623 hypothetical protein 25.2 1.1E+02 0.0024 21.3 3.3 29 388-417 23-51 (56)
55 smart00099 btg1 tob/btg1 famil 24.1 57 0.0012 26.1 2.0 41 365-406 34-83 (108)
56 TIGR02269 Myxococcus xanthus p 23.0 60 0.0013 28.6 2.0 39 373-421 125-163 (211)
57 smart00576 BTP Bromodomain tra 22.8 1.9E+02 0.004 21.4 4.5 59 389-447 8-72 (77)
58 PF02037 SAP: SAP domain; Int 22.1 1.7E+02 0.0036 18.0 3.4 17 391-407 7-23 (35)
59 PRK06549 acetyl-CoA carboxylas 21.9 56 0.0012 27.2 1.6 14 21-34 4-17 (130)
60 PF11698 V-ATPase_H_C: V-ATPas 21.9 4.8 0.0001 32.9 -4.6 25 31-55 66-90 (119)
61 PF12105 SpoU_methylas_C: SpoU 21.2 43 0.00093 23.4 0.7 18 389-406 27-44 (57)
62 PF01726 LexA_DNA_bind: LexA D 20.3 1.2E+02 0.0025 21.8 2.8 38 391-433 26-63 (65)
63 PF13592 HTH_33: Winged helix- 20.2 1.1E+02 0.0023 21.5 2.5 46 383-438 4-49 (60)
No 1
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=100.00 E-value=1.7e-82 Score=643.49 Aligned_cols=420 Identities=31% Similarity=0.561 Sum_probs=346.3
Q ss_pred CCCCCcCHHHHcccCCCCCeEEEEcCeEEecCCCcccccccccccccccCCchhhHHHhcCcHHHHhhhhhccccccccc
Q 013234 3 DSKKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVAYHPGAAWQYLDKFFTGYYLED 82 (447)
Q Consensus 3 ~~~~~~~~~e~~~~~~~~~~~v~i~g~vydvt~f~~~hPgg~~~l~~~~g~D~t~~f~~~H~~~~~~~l~~~~vg~~~~~ 82 (447)
++.+.+|++|+++|+++++|||+|+|+|||||+|. +||||+ .|..++|+|+|++|+++|+..++++|++|+||+..++
T Consensus 21 ~~~~~~s~~ev~~h~~~~~~wi~i~g~vYDvt~f~-~HPGG~-~i~~~aG~DaT~~F~~~H~~~~~~~l~~~~iG~l~~~ 98 (485)
T PLN03199 21 EKPQKISWQEVKKHASPDDAWIIHQNKVYDVSNWH-DHPGGA-VIFTHAGDDMTDIFAAFHAPGSQALMKKFYIGDLIPE 98 (485)
T ss_pred ccCCccCHHHHHhhCCCCCeEEEECCEEEcCCCcC-cCCCch-HHHhhCCCChhHHHHHhcCHHHHHHHHhccccccccc
Confidence 35689999999999999999999999999999997 899998 7889999999999999999999999999999976543
Q ss_pred cc------ccccchhHHHHHHHHhhcccCccCchhHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhh
Q 013234 83 YT------VSEASKDYRKLVAEFSKMGLFEKKGHCALYTFVFMAMLFAVSIYGVFCSDSTWVHLCSGGLMGLLWIQSGWI 156 (447)
Q Consensus 83 ~~------~~~~~~~y~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~~~~l 156 (447)
.. ..+.+++|++||++++++|++++++..+..+++.+++++++++++.+...++|+.+++++++|+++.+++++
T Consensus 99 ~~~~~~~~~~~~~~~y~~L~~~v~~~g~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aillg~~~~~~g~l 178 (485)
T PLN03199 99 STEHKDPQQIAFEKGYRDLRAKLIMMGMFKSNKMFYAYKCLFNMAIWAAACALVFYSDRFAMHIASALLLGLFFQQCGWL 178 (485)
T ss_pred cccccccchHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 22 123467899999999999999999998888888888888888777665667778899999999999999999
Q ss_pred hccccccccccCchhhhHHHHHHhhhhcCcchhhhhhccccccccCCC-------CCCCCCCCCCCeeeeeccccccccc
Q 013234 157 GHDSGHYQVMSSRGINRIVQVLTGNCLAGISIAWWKRNHNAHHIACNS-------LDFDPDLQHMPFFVVSSKFFNSITS 229 (447)
Q Consensus 157 ~HD~~H~~~~~~~~~N~~~g~~~~~~~~~~s~~~wr~~H~~HH~~tn~-------~~~DpD~~~~p~~~~~~~~~~~~~~ 229 (447)
+||++|+++++++++|+++|.++++++.|.|..||+.+||.||++||+ .+.|||++..|++++++.+......
T Consensus 179 ~HDa~H~~~~~~~~~N~~~g~~~g~l~~G~S~~wW~~~Hn~HH~~tN~~~~~~~~~~~DPDI~~~p~l~~~~~~~~~~~~ 258 (485)
T PLN03199 179 AHDFLHHQVFKKRKHGDLGGIFWGDLMQGFSMQWWKNKHNGHHAVPNLHCSSADAQDGDPDIDTMPLLAWSLKQAQSFRE 258 (485)
T ss_pred HHhhhhhhhhCCchHHHHHHHHHHHhccCCChHHHHHHHhhhhcCcCcCccccCCCCCCCCCCCCceeeecHHHhhhHhh
Confidence 999999999999999999998887788899999999999999999997 4789999988999888765432211
Q ss_pred hhhhhhcchhhHHhHHHhccchhHHHHHHHHHHHHHHHHHHHHHhcC-------------CCCchHHHHHHHHHHHHHHH
Q 013234 230 CYYERKLHFDSVARFLVSYQHWTFYPVMCLARINLFAQSFLLLLSKK-------------NVPNRVQEIFGILVFWIWYP 296 (447)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 296 (447)
... .+..+...+++.++|+++++|++.+.+++|...++...+... ....+..+++..++++++..
T Consensus 259 ~~~--~~~~~~~~~~~~~~Qh~~~~p~l~l~~l~w~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 336 (485)
T PLN03199 259 INA--DGKDSGFVKFAIKFQAFFYFPILLLARISWLNESFKCAFGLGAASENAALELEAKGLQYPLLEKAGILLHYAWMF 336 (485)
T ss_pred hhh--hccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 111 122344557899999999999998889999888876555311 01122345556666665544
Q ss_pred HHhhcCC--chhHHHHHHHHHHHhhh-heeeeeeccCcccccccCCCCCCcHHHHhHhcccccCC-----Ccchhhhhcc
Q 013234 297 LLISCLP--NWGERVMFIVASFSVTG-IQHVQFCLNHFSSNVYVGPPCSNDWFRKQTQGTLNIKC-----SSWMDWFHGG 368 (447)
Q Consensus 297 ~~~~~~~--~~~~~~~~~~~~~~~~~-~l~~~~~~~H~~~~~~~~~~~~~~w~~~ql~~s~~~~~-----~~~~~~l~~g 368 (447)
.+...++ .+...+.++++..++++ +++++|.++|..++.... +...||.+.|++||+|+++ ++|++||+||
T Consensus 337 ~lp~~~~~~~~~~~l~~~~~~~~~~g~~l~~~f~l~H~~~~~~~~-~~~~d~~~~Qv~TT~n~~~~~~~~s~~~~wf~GG 415 (485)
T PLN03199 337 TLSSGFGRFSFAYSAFYFFTATASCGFFLAIVFGLGHNGMATYDA-DARPDFWKLQVTTTRNIIGGHGFPQAFVDWFCGG 415 (485)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHhhHheEEEecCCccccccCC-CCCccHHHHHHHhccCccCCCCCcchHHHHHhcc
Confidence 4332221 12334445555555666 899999999999886533 3456899999999999986 6799999999
Q ss_pred cccccccccCCCCCCcChhhhhHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHhhh
Q 013234 369 LQFQVEHHLFPRLPRCNLRKVSPFVVELCKKHNLPYNIVSFWKSNAMTVETLQAAALQA 427 (447)
Q Consensus 369 lnyHieHHLfP~vP~~~lp~~~~~v~~~~~~~g~~y~~~~~~~~~~~~~~~L~~~~~~~ 427 (447)
|||||||||||+||++|||+++|+||++|+|+|+||++.++++++++++++|+++|+++
T Consensus 416 LN~QIEHHLFP~mp~~~y~~i~piVk~~C~k~glpY~~~~~~~a~~~~~~~L~~vg~~~ 474 (485)
T PLN03199 416 LQYQVDHHLFPMLPRHNIAKCHALVESFCKEWGVKYHEADLVDGTMEVLHHLGKVADDF 474 (485)
T ss_pred chhhhhhhcCCCCchhhHHhhhHHHHHHHHHhCCCccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999864
No 2
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=100.00 E-value=3.4e-82 Score=641.00 Aligned_cols=412 Identities=33% Similarity=0.561 Sum_probs=345.1
Q ss_pred CCCcCHHHHcccCCCCCeEEEEcCeEEecCCCcccccccccccccccCCchhhHHHhcCcHHHHhhhhhccccccccccc
Q 013234 5 KKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVAYHPGAAWQYLDKFFTGYYLEDYT 84 (447)
Q Consensus 5 ~~~~~~~e~~~~~~~~~~~v~i~g~vydvt~f~~~hPgg~~~l~~~~g~D~t~~f~~~H~~~~~~~l~~~~vg~~~~~~~ 84 (447)
.+.+|++|+++|++++||||+|+|+|||||+|+++||||. .|..++|+|+|++|+++|+..+.++|++|+||+..++.+
T Consensus 103 ~~~~t~~ev~~H~~~~d~Wivi~gkVYDvT~fl~~HPGG~-~i~~~aG~DaT~~F~~~H~~~~~~~l~~~~IG~l~~~~~ 181 (526)
T PLN03198 103 SKSHLLSEVAAHNKPNDCWIVIKNKVYDVSDFAAEHPGGS-VISTYFGRDGTDAFSSFHAASTWKILQDFYIGDVDNVEP 181 (526)
T ss_pred cCcCCHHHHHhhCCCCCeEEEECCEEEecHHHHHhCCCch-HHHHhcCCcHhHHHHHhcCHHHHHHHhhCcceecCCccc
Confidence 4699999999999999999999999999999999999997 789999999999999999999999999999997654443
Q ss_pred ccccchhHHHHHHHHhhcccCccCchhHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhhhccccccc
Q 013234 85 VSEASKDYRKLVAEFSKMGLFEKKGHCALYTFVFMAMLFAVSIYGVFCSDSTWVHLCSGGLMGLLWIQSGWIGHDSGHYQ 164 (447)
Q Consensus 85 ~~~~~~~y~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~~~~l~HD~~H~~ 164 (447)
.++.+++|++||++++++|+|++++.++...++..++++++++++++...++|..+++++++|+++.++++++|||+|++
T Consensus 182 ~~~~~~dy~~Lr~~~~~~G~fk~~~~~y~~~l~~~i~l~a~~~~~~~~~~~~~~~ll~a~llgl~~~q~g~l~HD~~H~s 261 (526)
T PLN03198 182 TPELLKDFRDLRALFLREQLFKSSKLYYVFKLLTNIAIFAASIAIICCSKSISAVLASACMMALCFQQCGWLSHDFLHNQ 261 (526)
T ss_pred cchhhhhHHHHHHHHHhccccccCcceeHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34577899999999999999999998888888888888888877766555566678899999999999999999999999
Q ss_pred cccCchhhhHHHHHHhhhhcCcchhhhhhccccccccCCCCC-----CCCCCCCCCeeeeeccccccccchhhhhhcchh
Q 013234 165 VMSSRGINRIVQVLTGNCLAGISIAWWKRNHNAHHIACNSLD-----FDPDLQHMPFFVVSSKFFNSITSCYYERKLHFD 239 (447)
Q Consensus 165 ~~~~~~~N~~~g~~~~~~~~~~s~~~wr~~H~~HH~~tn~~~-----~DpD~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 239 (447)
+++++++|+++|.++++++.|.|+.|||.+||.||.+||..+ .|||+.+.|++.++++......+.
T Consensus 262 ~~~~~~~n~~~g~~~~~~~~G~s~~~W~~~Hn~HH~~tN~~~~~~~~~DpDI~~~pl~~~~~~~~~~~~~~--------- 332 (526)
T PLN03198 262 VFETRWLNEVVGYLIGNAVLGFSTGWWKEKHNLHHAAPNECDQLYQPIDEDIDTLPLIAWSKDILATVENK--------- 332 (526)
T ss_pred ccCCcHHHHHHHHHHHHhhcCCCHHHHHHHHHHhccCCCCCCccCCCCCCCcCccceeEechhhhhcchhh---------
Confidence 999999999999987778889999999999999999999987 799999999998887653321111
Q ss_pred hHHhHHHhccchhHHHHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHHHHH-hhcCCchhHHHHHHHHHHH
Q 013234 240 SVARFLVSYQHWTFYPVMCLARINLFAQSFLLLLSKKNV-PNRVQEIFGILVFWIWYPLL-ISCLPNWGERVMFIVASFS 317 (447)
Q Consensus 240 ~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 317 (447)
..+.+.++|++++++++.+.++++.+.++..+..++.. ..+..++...++++.+...+ +..++.|..++++++..++
T Consensus 333 -~~~~~~~yQh~~f~~ll~l~~~~~~~~s~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~l~~~~~~~~l~~~~l~~~~ 411 (526)
T PLN03198 333 -TFLRILQYQHLFFMALLFFARGSWLFWSWRYTSTAKLAPADRLLEKGTILFHYFWFIGTACYLLPGWKPLVWMAVTELM 411 (526)
T ss_pred -hHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11234569999999988888888877766544333221 23445666666555443322 3335666655555555555
Q ss_pred hhhheeeeeeccCcccccccCCCCCCcHHHHhHhcccccCCCcchhhhhcccccccccccCCCCCCcChhhhhHHHHHHH
Q 013234 318 VTGIQHVQFCLNHFSSNVYVGPPCSNDWFRKQTQGTLNIKCSSWMDWFHGGLQFQVEHHLFPRLPRCNLRKVSPFVVELC 397 (447)
Q Consensus 318 ~~~~l~~~~~~~H~~~~~~~~~~~~~~w~~~ql~~s~~~~~~~~~~~l~~glnyHieHHLfP~vP~~~lp~~~~~v~~~~ 397 (447)
.+.+++++|+++|..+++.. .+.||...|+.+|+|+.+++|++||+||||||+||||||+||++|||+++|+||++|
T Consensus 412 ~g~~l~~vF~lnH~~~~v~~---~~~dw~~~Qv~tT~n~~~~~~~~wf~GGLN~QiEHHLFP~iP~~~l~~i~piVk~~C 488 (526)
T PLN03198 412 CGMLLGFVFVLSHNGMEVYN---KSKEFVNAQIVSTRDIKANIFNDWFTGGLNRQIEHHLFPTMPRHNLNKIAPQVEAFC 488 (526)
T ss_pred HHHHHHhhhhccccCCCCCC---CCcCHHHHHHhcCcCcCCchHHHHhhcCCcccchhhcCCCCchhhHHHHhHHHHHHH
Confidence 55588899999999999752 234899999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCcccccHHHHHHHHHHHHHHHHhhhhhc
Q 013234 398 KKHNLPYNIVSFWKSNAMTVETLQAAALQARDL 430 (447)
Q Consensus 398 ~~~g~~y~~~~~~~~~~~~~~~L~~~~~~~~~~ 430 (447)
+|+|+||++.++++++++++++|+++|+.+++-
T Consensus 489 ~k~GlpY~~~~~~~a~~~~l~~L~~vg~~~~~~ 521 (526)
T PLN03198 489 IKHGLVYEDVSIAAGTCKVLKALKEVAEAAAEQ 521 (526)
T ss_pred HHcCCCCCCCCHHHHHHHHHHHHHHHHHhHhcc
Confidence 999999999999999999999999999987654
No 3
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=100.00 E-value=1.7e-70 Score=518.42 Aligned_cols=403 Identities=37% Similarity=0.658 Sum_probs=324.7
Q ss_pred CCCCcCHHHHcccCCCCCeEEEEcCeEEecCCCcccccccccccccccCCchhhHHHhcCcHH--HHhhhhhcccccccc
Q 013234 4 SKKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVAYHPGA--AWQYLDKFFTGYYLE 81 (447)
Q Consensus 4 ~~~~~~~~e~~~~~~~~~~~v~i~g~vydvt~f~~~hPgg~~~l~~~~g~D~t~~f~~~H~~~--~~~~l~~~~vg~~~~ 81 (447)
..+++|++++++|++.++.|++||| |||+|+|+++||||+.+|..++|+|+|++|+++|+.. +++.|+...+|...+
T Consensus 6 ~~~~~~we~~~~~~~~~~~W~~id~-vYd~s~~~~~HPGG~~~I~~~~g~DaTdaF~AfH~~~~~~~~~l~~l~~~~~~p 84 (430)
T KOG4232|consen 6 LPTTFSWEGKRKHDKAEGLWLVIDG-VYDISDWIKRHPGGSRVIEHYAGQDATDAFEAFHPGTAFAYKHLKPLLIGELSP 84 (430)
T ss_pred CceeeeccchhhccCCCceEEEeec-cccHHHHHHhCCCchhHHHHhcCCccchHHHHhCCChHHHHHHHHHHHcCCcCc
Confidence 3568999999999999999999999 9999999999999999999999999999999999998 788999999997655
Q ss_pred ccccc------ccchhHHHHHHHHhhcccCccCchhHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHh
Q 013234 82 DYTVS------EASKDYRKLVAEFSKMGLFEKKGHCALYTFVFMAMLFAVSIYGVFCSDSTWVHLCSGGLMGLLWIQSGW 155 (447)
Q Consensus 82 ~~~~~------~~~~~y~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~~~~ 155 (447)
+.+.. ...++++++|+++++.|+++.++...+...+.+++..++++++.+.. .+++++++|+.++|.++
T Consensus 85 e~~~~~~~~d~~~~~~f~klr~~~~~~gl~~~~~~ffl~~~l~~i~~~~~a~~~i~~~-----~l~~a~Ll~~a~~Qs~~ 159 (430)
T KOG4232|consen 85 EIPSLDLEKDGFRNESFRKLREKLEDMGLMDLNKTFFLHLLLLIILYLVLAWLLIYLL-----SLISAVLLGLAWAQSGW 159 (430)
T ss_pred cccccccccchhhhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 53332 23457899999999999999998888776666666555555544322 67899999999999999
Q ss_pred hhccccccccccCchhhhHHHHHHhhhhcCcchhhhhhccccccccCCCCCCCCCCCCCCeeeeeccccccccchhhhhh
Q 013234 156 IGHDSGHYQVMSSRGINRIVQVLTGNCLAGISIAWWKRNHNAHHIACNSLDFDPDLQHMPFFVVSSKFFNSITSCYYERK 235 (447)
Q Consensus 156 l~HD~~H~~~~~~~~~N~~~g~~~~~~~~~~s~~~wr~~H~~HH~~tn~~~~DpD~~~~p~~~~~~~~~~~~~~~~~~~~ 235 (447)
++||.||.+.+|+++||+++..++++.+.|+|..||+..|++||.+||..++|||++..|.+.. ...++....+..|+
T Consensus 160 l~Hd~gH~~i~~~~~wN~~~~~fv~n~L~G~sa~WW~~~H~~HHa~pN~~~~DpDi~~~P~fl~--g~~~~~~~~k~krk 237 (430)
T KOG4232|consen 160 LQHDYGHLSIFKNSKWNHLAQKFVGNHLKGFSAAWWKSHHNQHHAAPNSLDKDPDIDFEPAFLL--GDPNSHEYGKKKRK 237 (430)
T ss_pred HhcccccccccccccHHHHHHHHHhhhcccccHHHHHHHHhhhhccCccCCCCccccccchhhh--CCCchhhhccccee
Confidence 9999999999999999999999999999999999999999999999999999999999883322 22222222233333
Q ss_pred cchhhHHhHHHhccchhHH----HH---HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhhcCCchhHH
Q 013234 236 LHFDSVARFLVSYQHWTFY----PV---MCLARINLFAQSFLLLLSKKNVPNRVQEIFGILVFWIWYPLLISCLPNWGER 308 (447)
Q Consensus 236 ~~~~~~~~~~~~~q~~~~~----~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (447)
+.+ ...|+.|++ |. +.+...+.........+.....+.+....+.+...+.+.+..+++++.|...
T Consensus 238 ~~~-------~~~qh~yf~~~~~p~l~~~~~~~~~~~~~~~~~~w~Dl~~~~~~~~~~~i~~~~~~~~~~~~~L~~w~~r 310 (430)
T KOG4232|consen 238 YTP-------YPEQHLYFFLIGPPFLRLMWFQQSIIFVQTNLLLWYDLYWPDRFYLRAFIYLHWGWGLLLLSCLPNWPIR 310 (430)
T ss_pred Eee-------cccceEEEEeccchHHHHHHHHHHHHHHHhHHHHHHHhhhhhhHHHhhHHHhcchhhhHHHHhccCchHH
Confidence 322 245666655 33 2223333333333333445555566666667777777766667778888888
Q ss_pred HHHHHHHHHhhhheeeeeeccCcccccccCCCCCCcHHHHhHhcccccCCCcchhhhhcccccccccccCCCCCCcChhh
Q 013234 309 VMFIVASFSVTGIQHVQFCLNHFSSNVYVGPPCSNDWFRKQTQGTLNIKCSSWMDWFHGGLQFQVEHHLFPRLPRCNLRK 388 (447)
Q Consensus 309 ~~~~~~~~~~~~~l~~~~~~~H~~~~~~~~~~~~~~w~~~ql~~s~~~~~~~~~~~l~~glnyHieHHLfP~vP~~~lp~ 388 (447)
+.++..++.++ +..||+..++....+...||+..|+.+|+|+.++.+++||.||+|+|+||||||+||++||++
T Consensus 311 ~~~~~~s~~v~------l~~nH~~~~i~~~~~i~~dw~~~Q~~tT~n~~~~~f~dwl~ghln~qieHHLFPtmpr~nL~~ 384 (430)
T KOG4232|consen 311 FLFSSWSFWVT------LTMNHIDPEIYHEGDIRRDWFSLQLATTINVGPSKFSDWLSGHLNFQIEHHLFPTMPRHNLNK 384 (430)
T ss_pred HHHHHHHHHHH------HhhhccchhhccCCcchhhHHHHHHhhccccCchhHHHHHHhhhhhhHHhhcCCCCCccchHH
Confidence 77776665544 567999999775444568999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHhhh
Q 013234 389 VSPFVVELCKKHNLPYNIVSFWKSNAMTVETLQAAALQA 427 (447)
Q Consensus 389 ~~~~v~~~~~~~g~~y~~~~~~~~~~~~~~~L~~~~~~~ 427 (447)
+.|.|+|+|+|+|++|++.+++++++....+|++++.+.
T Consensus 385 v~P~Vke~c~k~~l~y~~~~~~~~~~~~~~~lr~~~n~~ 423 (430)
T KOG4232|consen 385 VAPLVKELCKKHGLPYREKPHFEALGDIIQQLRNSANPV 423 (430)
T ss_pred HHHHHHHHHHHcCCccccchHHHHHHHHHHHhhhccchh
Confidence 999999999999999999999999999999888877643
No 4
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=100.00 E-value=2.4e-43 Score=320.95 Aligned_cols=202 Identities=43% Similarity=0.793 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccCchhhhHHHHHHhhhhcCcchhhhhhccccccccCCCCCCCCCCCCCCeeeee
Q 013234 141 CSGGLMGLLWIQSGWIGHDSGHYQVMSSRGINRIVQVLTGNCLAGISIAWWKRNHNAHHIACNSLDFDPDLQHMPFFVVS 220 (447)
Q Consensus 141 l~~~l~g~~~~~~~~l~HD~~H~~~~~~~~~N~~~g~~~~~~~~~~s~~~wr~~H~~HH~~tn~~~~DpD~~~~p~~~~~ 220 (447)
++++++|+++.+.++++|||+|+++++++++|+++|.+.+ .+.|.|+.+||..|+.||++||+.++|||+...+.....
T Consensus 2 ~~ai~~g~~~~~~~~~~Hd~~H~~~~~~~~~n~~~g~~~~-~~~g~s~~~w~~~H~~HH~~tn~~~~Dpd~~~~~~~~~~ 80 (204)
T cd03506 2 LLAILLGLFWAQGGFLAHDAGHGQVFKNRWLNKLLGLTVG-NLLGASAGWWKNKHNVHHAYTNILGHDPDIDTLPLLARS 80 (204)
T ss_pred HHHHHHHHHHHHHHHHHHhccCccccCCchHHHHHHHHHH-hccCCCHHHHHHHHhhhcCcCCCCCCCCCCCcCceEEec
Confidence 5678889999988899999999999999999999999775 478899999999999999999999999999876655443
Q ss_pred ccccccccchhhhhhcchhhHHhHHHhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhh
Q 013234 221 SKFFNSITSCYYERKLHFDSVARFLVSYQHWTFYPVMCLARINLFAQSFLLLLSKKNVPNRVQEIFGILVFWIWYPLLIS 300 (447)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (447)
+... ..+...++..++|++++++++.+.
T Consensus 81 ~~~~------------~~~~~~~~~~~~q~~~~~~~~~~~---------------------------------------- 108 (204)
T cd03506 81 EPAF------------GKDQKKRFLHRYQHFYFFPLLALL---------------------------------------- 108 (204)
T ss_pred cccc------------ccchHHHHHHHHHHHHHHHHHHHH----------------------------------------
Confidence 3211 012234566677777665543321
Q ss_pred cCCchhHHHHHHHHHHHhhhheeeeeeccCcccccccC-CCCCCcHHHHhHhcccccCCCcchhhhhcccccccccccCC
Q 013234 301 CLPNWGERVMFIVASFSVTGIQHVQFCLNHFSSNVYVG-PPCSNDWFRKQTQGTLNIKCSSWMDWFHGGLQFQVEHHLFP 379 (447)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~H~~~~~~~~-~~~~~~w~~~ql~~s~~~~~~~~~~~l~~glnyHieHHLfP 379 (447)
+.+|+++.++.+.++.++++++|..+++... +.++.||++.|+.+|+|+.++++++|++||+|||+||||||
T Consensus 109 -------~~~~~~~~~~~~~~l~~~~~~~H~~~~~~~~~~~~~~~w~~~q~~tt~~~~~~~~~~~l~ggln~qieHHLfP 181 (204)
T cd03506 109 -------LLAFLVVQLAGGLWLAVVFQLNHFGMPVEDPPGESKNDWLERQVLTTRNITGSPFLDWLHGGLNYQIEHHLFP 181 (204)
T ss_pred -------HHHHHHHHHHHhhhhheEeecccccccccCCCCCcccCHHHHHHhCcccCCCCCHHHHHhcchhhHHHHhcCC
Confidence 2344444445555888899999999998753 34678999999999999988899999999999999999999
Q ss_pred CCCCcChhhhhHHHHHHHHHcCC
Q 013234 380 RLPRCNLRKVSPFVVELCKKHNL 402 (447)
Q Consensus 380 ~vP~~~lp~~~~~v~~~~~~~g~ 402 (447)
+||+++||+++++||+.|+|+|+
T Consensus 182 ~ip~~~l~~~~~~v~~~~~~~gv 204 (204)
T cd03506 182 TMPRHNYPKVAPLVRELCKKHGL 204 (204)
T ss_pred CchhhhHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999986
No 5
>PLN02598 omega-6 fatty acid desaturase
Probab=100.00 E-value=1.3e-39 Score=321.14 Aligned_cols=308 Identities=18% Similarity=0.237 Sum_probs=209.6
Q ss_pred hHHHHHHHHhhcccCccCchhHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhhhccccccccccCch
Q 013234 91 DYRKLVAEFSKMGLFEKKGHCALYTFVFMAMLFAVSIYGVFCSDSTWVHLCSGGLMGLLWIQSGWIGHDSGHYQVMSSRG 170 (447)
Q Consensus 91 ~y~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~~~~l~HD~~H~~~~~~~~ 170 (447)
..+++|+.+.+ .+|++++.+.+..++..++++++++++.. ..+|++++++++++|.+..++++++|||+|++++++++
T Consensus 79 tl~~i~~aiP~-~~F~~s~~rs~~~l~~~i~~~~~~~~~~~-~~~w~~~~l~~~~~G~~~~~l~vl~Hec~H~s~~~~~~ 156 (421)
T PLN02598 79 TLKDVVKTLPK-EVFEIDDFKAWKTVAITVTSYALGLAAIA-VAPWYLLPLAWAWLGTAITGFFVIGHDCGHNSFSKNQL 156 (421)
T ss_pred CHHHHHHhCCH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCHH
Confidence 45788888865 38999998888777776666655544332 23466777888889999999999999999999999999
Q ss_pred hhhHHHHHHhhhhcCcchhhhhhccccccccCCCCCCCCCCCCCCeeeeeccccccccchhhhhhcchhhHHhHHHhccc
Q 013234 171 INRIVQVLTGNCLAGISIAWWKRNHNAHHIACNSLDFDPDLQHMPFFVVSSKFFNSITSCYYERKLHFDSVARFLVSYQH 250 (447)
Q Consensus 171 ~N~~~g~~~~~~~~~~s~~~wr~~H~~HH~~tn~~~~DpD~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 250 (447)
+|+++|.+++ .+++.|+..||..|+.||++||..++|||... .++.+++. .....+++.+
T Consensus 157 lN~~vG~~~~-~~ll~p~~~wr~~H~~HH~~tn~~~~D~~~~p-----~t~~e~~~-----------~~~~~r~l~~--- 216 (421)
T PLN02598 157 VEDIVGTIAF-TPLIYPFEPWRIKHNTHHAHTNKLVMDTAWQP-----FRPHQFDN-----------ADPLRKAMMR--- 216 (421)
T ss_pred HHHHHHHHHH-HHhcCCHHHHHHHHHHHccCcCCCCCCCCcCC-----cCHHHHhh-----------cCHHHHHHHH---
Confidence 9999999775 45678999999999999999999999998863 22222221 1112222221
Q ss_pred hhHHHHHHHHHHHHHHH-HHH-HHHhcCCCCchHHHHHHHHHH-HHHHHHHhhcCCchhHHHHHHHHHHHhhhheeeeee
Q 013234 251 WTFYPVMCLARINLFAQ-SFL-LLLSKKNVPNRVQEIFGILVF-WIWYPLLISCLPNWGERVMFIVASFSVTGIQHVQFC 327 (447)
Q Consensus 251 ~~~~~l~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 327 (447)
....|++.+........ -+. ..++++...+...+.+.+.++ .++++.++...|.+..+.+|+++.++...++.++++
T Consensus 217 ~~~GP~yl~~~~~~~~~~hf~~~~f~~~er~~v~~S~~~v~~~~~~~l~~~~~~~G~~~~~~~ylvP~Lv~~~wl~~it~ 296 (421)
T PLN02598 217 AGMGPLWWWASIGHWLFWHFDLNKFRPQEVPRVKISLAAVFAFMALGLPPLLYTTGPVGFVKWWLMPWLGYHFWMSTFTM 296 (421)
T ss_pred HhHhHHHHHHhhhcceeeccCcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11123333222210000 000 011111111112233332222 223333333345555555555444444448888899
Q ss_pred ccCcccccccCCCCCCcHHHHhHhcccccCCCcchhhhhcccccccccccCCCCCCcChhhhhHHHHHHHHHcCCCcccc
Q 013234 328 LNHFSSNVYVGPPCSNDWFRKQTQGTLNIKCSSWMDWFHGGLQFQVEHHLFPRLPRCNLRKVSPFVVELCKKHNLPYNIV 407 (447)
Q Consensus 328 ~~H~~~~~~~~~~~~~~w~~~ql~~s~~~~~~~~~~~l~~glnyHieHHLfP~vP~~~lp~~~~~v~~~~~~~g~~y~~~ 407 (447)
++|..++++..+.++++|.+.|+.+|++++.+.|++++++|+|+|++||+||+||+||||++++.+|+...++ |++.
T Consensus 297 lhHt~p~ip~~~~~eW~~~~~al~~Tv~~~~~~~~~~L~hnIn~HV~HHLfP~IP~Y~lpea~~alk~~~g~~---y~~~ 373 (421)
T PLN02598 297 VHHTAPHIPFKQAREWNAAQAQLNGTVHCDYPAWIEFLCHDISVHIPHHISSKIPSYNLRKAHASLQENWGKH---LNKA 373 (421)
T ss_pred HhhcCCCCCccccccccHhhhhhcCceecCCcHHHHHHHcCCccchhhhcCCCCCcchHHHHHHHHHHHhccc---cccC
Confidence 9999999887666788889999999999988888999999999999999999999999999999999987764 5544
Q ss_pred -cHHHHHHHHHHHHHHH
Q 013234 408 -SFWKSNAMTVETLQAA 423 (447)
Q Consensus 408 -~~~~~~~~~~~~L~~~ 423 (447)
..++++++..++++-.
T Consensus 374 ~~~~~~l~~~~~~C~~~ 390 (421)
T PLN02598 374 TFNWRLMKTILTQCHVY 390 (421)
T ss_pred chhHHHHHHHhhheEEE
Confidence 4477777777766533
No 6
>PLN02498 omega-3 fatty acid desaturase
Probab=100.00 E-value=3.1e-39 Score=315.56 Aligned_cols=314 Identities=16% Similarity=0.133 Sum_probs=211.6
Q ss_pred hHHHHHHHHhhcccCccCchhHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhhhccccccccccCch
Q 013234 91 DYRKLVAEFSKMGLFEKKGHCALYTFVFMAMLFAVSIYGVFCSDSTWVHLCSGGLMGLLWIQSGWIGHDSGHYQVMSSRG 170 (447)
Q Consensus 91 ~y~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~~~~l~HD~~H~~~~~~~~ 170 (447)
..+++|+.+.+ .+|++++++.+..++..+++.++++++.....+|++++++++++|..+.++++++|||+|+++|++++
T Consensus 103 tl~dir~aIP~-hcF~~s~~rs~~yv~~d~~vi~~l~~~a~~~~~w~~wpl~w~~~G~~~~gL~vl~HDcgHgsf~~~k~ 181 (450)
T PLN02498 103 NLADIRAAIPK-HCWVKNPWRSMSYVVRDVAVVFGLAAAAAYFNNWVVWPLYWFAQGTMFWALFVLGHDCGHGSFSNNPK 181 (450)
T ss_pred CHHHHHHhCCH-HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhccccccccChH
Confidence 46788888876 48999998877666666655544444443345677788889999999999999999999999999999
Q ss_pred hhhHHHHHHhhhhcCcchhhhhhccccccccCCCCCCCCCCCCCCeeeeeccccccccchhhhhhcchhhHHhHHHhccc
Q 013234 171 INRIVQVLTGNCLAGISIAWWKRNHNAHHIACNSLDFDPDLQHMPFFVVSSKFFNSITSCYYERKLHFDSVARFLVSYQH 250 (447)
Q Consensus 171 ~N~~~g~~~~~~~~~~s~~~wr~~H~~HH~~tn~~~~DpD~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 250 (447)
+|+++|.+++ .+++.|+.+||.+|+.||++||+.++||++. | .+++.++.+.. .....+....++
T Consensus 182 lNd~vG~ll~-~~ll~py~~Wr~sH~~HH~~Tn~~e~D~~~~--P---~t~~~y~~l~~--------~~~~~~~~~~~~- 246 (450)
T PLN02498 182 LNSVVGHLLH-SSILVPYHGWRISHRTHHQNHGHVENDESWH--P---LSEKIYKSLDK--------VTRTLRFTLPFP- 246 (450)
T ss_pred HHHHHHHHHH-HHhcCCHHHHHHHHHHHhcCCCCCCCCCCCC--c---chHHHHHhccc--------cchHHHHHHHHH-
Confidence 9999999885 4567899999999999999999999999875 3 22222221100 000001111111
Q ss_pred hhHHHHHHHHHHHHHH----HHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhhheeeee
Q 013234 251 WTFYPVMCLARINLFA----QSFLLLLSKKNVPNRVQEIFGILVFWIWYPLLISCLPNWGERVMFIVASFSVTGIQHVQF 326 (447)
Q Consensus 251 ~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 326 (447)
.+.+|+|.+.+..... ..-..++.+++..+.....++.++..+++..+....|.+..+.+|.++.+++..++.+++
T Consensus 247 ~~g~p~YL~~~~~g~~~sHF~p~s~lF~~~er~~V~~S~~~~~~~~~~l~~l~~~~G~~~~l~~Y~vP~lv~~~WL~~iT 326 (450)
T PLN02498 247 MLAYPFYLWSRSPGKKGSHFHPDSDLFVPKERKDVITSTACWTAMAALLVCLSFVMGPIQMLKLYGIPYWIFVMWLDFVT 326 (450)
T ss_pred HHHHHHHHhhhccCCcCcccCCCcccCChhhhhheeeehHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2223333332221100 000011222222222223233333333333333345655566666666666666999999
Q ss_pred eccCcc--cccccCCCCCCcHHHHhHhcccccCCCcchhhhhcccccccccccCCCCCCcChhhhhHHHHHHHHHcCCCc
Q 013234 327 CLNHFS--SNVYVGPPCSNDWFRKQTQGTLNIKCSSWMDWFHGGLQFQVEHHLFPRLPRCNLRKVSPFVVELCKKHNLPY 404 (447)
Q Consensus 327 ~~~H~~--~~~~~~~~~~~~w~~~ql~~s~~~~~~~~~~~l~~glnyHieHHLfP~vP~~~lp~~~~~v~~~~~~~g~~y 404 (447)
+++|++ .+++..+.++++|.+.|+ +|+|.+.+ |++++++++++|+.||+||+||+||++|+++.+|+...++-. +
T Consensus 327 yLhHt~~~~~iP~y~~~eWs~~rGaL-~TvDR~yg-~i~~l~H~I~tHV~HHlf~~IPhYhl~eAt~aiK~~lg~yy~-e 403 (450)
T PLN02498 327 YLHHHGHEDKLPWYRGKEWSYLRGGL-TTLDRDYG-WINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR-E 403 (450)
T ss_pred hhcccCCCCCCCCCCCCCcchhhccc-eeecCccc-chhhhhcCcccchhhhccCCCCCcCHHHHHHHHHHHhHHhee-c
Confidence 999994 446666677899999999 78888875 888899999999999999999999999999999999998722 3
Q ss_pred cccc------HHHHHHHHHHHHHHH
Q 013234 405 NIVS------FWKSNAMTVETLQAA 423 (447)
Q Consensus 405 ~~~~------~~~~~~~~~~~L~~~ 423 (447)
.+.+ +++++.+..++.+-+
T Consensus 404 ~~~~~~~p~~~~~~l~r~~~~c~~v 428 (450)
T PLN02498 404 PKKSGPLPFHLLGSLIRSMKQDHYV 428 (450)
T ss_pred CCCCCCchhHHHHHHHHHhcceEEE
Confidence 3333 678888877766544
No 7
>PLN02505 omega-6 fatty acid desaturase
Probab=100.00 E-value=4.6e-38 Score=306.24 Aligned_cols=318 Identities=14% Similarity=0.119 Sum_probs=207.0
Q ss_pred hHHHHHHHHhhcccCccCchhHHHHHHHHHHHHHHHHHHhh----cCch---hHHHHHHHHHHHHHHHHHHhhhcccccc
Q 013234 91 DYRKLVAEFSKMGLFEKKGHCALYTFVFMAMLFAVSIYGVF----CSDS---TWVHLCSGGLMGLLWIQSGWIGHDSGHY 163 (447)
Q Consensus 91 ~y~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~l~~~l~g~~~~~~~~l~HD~~H~ 163 (447)
..+++|+.+.+ .+|++++.+.+..++..+++.+++++++. ..+. ++++.+.++++|.++.+++.++|||+|+
T Consensus 32 tl~~ir~aiP~-~~f~~s~~rs~~~v~~d~~~i~~~~~~a~~~~~~~p~~~~~~l~~~~~~~~G~~~~~l~vl~HDcgH~ 110 (381)
T PLN02505 32 TLGDIKKAIPP-HCFKRSVLRSFSYLVYDLLIAALLYYVATNYIPLLPGPLSYVAWPLYWAAQGCVLTGVWVIAHECGHH 110 (381)
T ss_pred cHHHHHHhCCH-HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 46788888876 48999998887766666666555544322 1122 3344566888999999998899999999
Q ss_pred ccccCchhhhHHHHHHhhhhcCcchhhhhhccccccccCCCCCCCCCCCCCCeeeeeccccccccchhhhhhcchhhHHh
Q 013234 164 QVMSSRGINRIVQVLTGNCLAGISIAWWKRNHNAHHIACNSLDFDPDLQHMPFFVVSSKFFNSITSCYYERKLHFDSVAR 243 (447)
Q Consensus 164 ~~~~~~~~N~~~g~~~~~~~~~~s~~~wr~~H~~HH~~tn~~~~DpD~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (447)
++|+++++|+++|.+++. +++.|+.+||..|+.||++||+.++||+.. | .++...+. + .+-+ -.++.+
T Consensus 111 s~~~~~~lN~~vG~i~~~-~ll~p~~~Wr~~H~~HH~~tn~~~~D~~~~--P---~~~~~~~~----~-~~~~-~~p~~~ 178 (381)
T PLN02505 111 AFSDYQWLDDTVGLVLHS-ALLVPYFSWKYSHRRHHSNTGSLERDEVFV--P---KKKSALPW----Y-SKYL-NNPPGR 178 (381)
T ss_pred hhhCChHHHHHHHHHHHH-HHcCCHHHHHHHHHHHhhccCCCCCCcccc--C---cCHHHHhH----H-HHHh-cChHHH
Confidence 999999999999998865 567899999999999999999999998853 2 11111000 0 0000 000111
Q ss_pred HHHh-ccchhHHHHHHHHHHHHHHH-HHHH-------HHhcCCCCchHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHH
Q 013234 244 FLVS-YQHWTFYPVMCLARINLFAQ-SFLL-------LLSKKNVPNRVQEIFGILVFWIWYPLLISCLPNWGERVMFIVA 314 (447)
Q Consensus 244 ~~~~-~q~~~~~~l~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (447)
.... .+....+|+|.+........ .... +++++.......+.+.+++.+..+..+....|.+..+.+|+++
T Consensus 179 ~~~~~~~~~~G~p~yl~~~~~g~~~~~~~~hf~p~s~lf~~~er~~v~~S~~~i~~~~~~l~~~~~~~G~~~~l~~y~vP 258 (381)
T PLN02505 179 LLHIVVQLTLGWPLYLAFNVSGRPYDRFACHFDPYSPIFNDRERLQIYISDAGILAVSFGLYRLAAAKGLAWVLCVYGVP 258 (381)
T ss_pred HHHHHHHHHhHHHHHHHhhhcCCCCCcccccCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 1111 11122233333221110000 0000 0011000111122223333333333333334655555555555
Q ss_pred HHHhhhheeeeeeccCcccccccCCCCCCcHHHHhHhcccccCCCcchhhhhcccc-cccccccCCCCCCcChhhhhHHH
Q 013234 315 SFSVTGIQHVQFCLNHFSSNVYVGPPCSNDWFRKQTQGTLNIKCSSWMDWFHGGLQ-FQVEHHLFPRLPRCNLRKVSPFV 393 (447)
Q Consensus 315 ~~~~~~~l~~~~~~~H~~~~~~~~~~~~~~w~~~ql~~s~~~~~~~~~~~l~~gln-yHieHHLfP~vP~~~lp~~~~~v 393 (447)
..++..++.++++++|+.++++..+.++++|.+.|+. |+|.+. .++++++++++ +|+.||+||+||+|||+++++.+
T Consensus 259 ~lv~~~wlv~itylqHt~~~ip~~~~~~W~~~rgAl~-tvdr~y-g~~~~l~h~I~~~Hv~HHl~srIP~Y~l~eA~~ai 336 (381)
T PLN02505 259 LLIVNAFLVLITYLQHTHPALPHYDSSEWDWLRGALA-TVDRDY-GILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAI 336 (381)
T ss_pred HHHHHHHHHHHHHHhccCCCCCccCCCCcChhhccce-eccCcc-hHHHHHHccCCcccchhhccCCCCCCCHHHHHHHH
Confidence 5555559999999999999999888889999999995 677665 48899999996 99999999999999999999999
Q ss_pred HHHHHHcCCCcccccHHHHHHHHHHHHHHHH
Q 013234 394 VELCKKHNLPYNIVSFWKSNAMTVETLQAAA 424 (447)
Q Consensus 394 ~~~~~~~g~~y~~~~~~~~~~~~~~~L~~~~ 424 (447)
|+...++ +.|+.+++++++.+.+++.+-+.
T Consensus 337 k~~lg~~-y~~~~~~~~~~l~~~~~~C~~v~ 366 (381)
T PLN02505 337 KPILGEY-YQFDGTPVYKALWREAKECIYVE 366 (381)
T ss_pred HHHhHHH-hcCCCCcHHHHHHHHhcceEEeC
Confidence 9999997 44555578999988888776543
No 8
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=100.00 E-value=7e-36 Score=290.37 Aligned_cols=301 Identities=20% Similarity=0.242 Sum_probs=176.8
Q ss_pred hHHHHHHHHhhcccCccCchhHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhhhccccccccccCch
Q 013234 91 DYRKLVAEFSKMGLFEKKGHCALYTFVFMAMLFAVSIYGVFCSDSTWVHLCSGGLMGLLWIQSGWIGHDSGHYQVMSSRG 170 (447)
Q Consensus 91 ~y~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~~~~l~HD~~H~~~~~~~~ 170 (447)
....++.++.++ ..+++....+..++.++++.+++........+|+..+++.++.|.....++.++|||+||+++|++|
T Consensus 17 ~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~~~~~~~~l~~~~~v~Hd~~Hgs~~~~r~ 95 (343)
T COG3239 17 PLDSIRARLPKP-RTRRDAIAILITFLALAGLWALLALSLAYWPSWWLLPLALLLAGLLLTGLFSVGHDCGHGSFFKNRW 95 (343)
T ss_pred chhhHHhhCccc-cccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhhhhh
Confidence 455566666654 3344433344434434443333333333334466666666666766777888999999999999999
Q ss_pred hhhHHHHHHhhhhcCcchhhhhhccccccccCCCCCCCCCCCCCCeeeeeccccccccchhhhhhcchhhHHhHHHhccc
Q 013234 171 INRIVQVLTGNCLAGISIAWWKRNHNAHHIACNSLDFDPDLQHMPFFVVSSKFFNSITSCYYERKLHFDSVARFLVSYQH 250 (447)
Q Consensus 171 ~N~~~g~~~~~~~~~~s~~~wr~~H~~HH~~tn~~~~DpD~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 250 (447)
+|+++|.+... +.+.|+..||..|++||++||..|+|||.... .+.. ..+...+++.
T Consensus 96 iNd~ig~l~~~-~~~~p~~~wR~~H~~HH~~t~~~~~d~~~~~~-----~~~~-----------------~~~~~l~~~~ 152 (343)
T COG3239 96 INDLIGHLAAA-LLLAPPVFWRISHNQHHAHTNILDDDPETYVS-----YPEQ-----------------LRRGPLRFQL 152 (343)
T ss_pred HHHHHHHHHHH-HHhcChhhhhhhHHHhhcccCCCCCCHHHHHh-----Cchh-----------------hhhhhHHHHH
Confidence 99999998754 55578899999999999999998888776421 1111 0011122222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH--HhcCC-CCchHHHHHHHHHHHHHHHHHhhcCCchhHHHHH-HHHHHHhhhheeeee
Q 013234 251 WTFYPVMCLARINLFAQSFLLL--LSKKN-VPNRVQEIFGILVFWIWYPLLISCLPNWGERVMF-IVASFSVTGIQHVQF 326 (447)
Q Consensus 251 ~~~~~l~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~ 326 (447)
+..+.+.......+....+... ...+. ....... +...++.+.... +. ...+.| +++..++..+....+
T Consensus 153 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~--~~--~l~~~~~~~p~l~~~~~~~~~~ 225 (343)
T COG3239 153 IRLPWLAFGFGPRWALLHFELLEKLFKRSGKAPKAAA---LATLLAAIGLAA--LL--ALAFFWGLIPLLLVGLWLVLVL 225 (343)
T ss_pred HHHHHHHHhhhhhhhhhhhhhhhhccCCcccchHHHH---HHHHHHHHHHHH--HH--HHHHHHhHhHHHHHHHHHHHHH
Confidence 2221111111111111111111 11111 1111111 111111111000 00 011112 122222222444445
Q ss_pred eccCcccccccCCCCCCcHHHHhHhcccccCCCcchhhhhcccccccccccCCCCCCcChhhhhHHHHHHHHHcCCCccc
Q 013234 327 CLNHFSSNVYVGPPCSNDWFRKQTQGTLNIKCSSWMDWFHGGLQFQVEHHLFPRLPRCNLRKVSPFVVELCKKHNLPYNI 406 (447)
Q Consensus 327 ~~~H~~~~~~~~~~~~~~w~~~ql~~s~~~~~~~~~~~l~~glnyHieHHLfP~vP~~~lp~~~~~v~~~~~~~g~~y~~ 406 (447)
.+.|...........+.+|..+|+.+|+|++.+++++|+++|+|||+|||+||+||+|+||++++++|+.|.+.|+ +.+
T Consensus 226 ~~~h~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~l~~n~nyH~~HHl~P~vP~y~lp~~~~~~~~~~~~~~~-~~~ 304 (343)
T COG3239 226 FVHHTFDLLPHHGLEDWQWSDRALNARSNVDAPPLLRFLTGNINYHVEHHLFPDVPWYRLPRAHRLIKEALGERGL-TIY 304 (343)
T ss_pred HhhcccccccccccccchHHHHHHhccCccCchHHHHHhcCCccccHhhhCCCCCchhhHHHHHHHHHHHcCcCCc-hhh
Confidence 5677766655445567788999999999999999999999999999999999999999999999999999999984 444
Q ss_pred ccHHHHHHHHHHHHHHH
Q 013234 407 VSFWKSNAMTVETLQAA 423 (447)
Q Consensus 407 ~~~~~~~~~~~~~L~~~ 423 (447)
.+|.+-......+++..
T Consensus 305 ~~y~~~~~~~~~~~~~~ 321 (343)
T COG3239 305 TGYREFKLATLWQLRGE 321 (343)
T ss_pred hhhhhhhhccHHHHhhh
Confidence 56666655444444433
No 9
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=100.00 E-value=4.3e-35 Score=268.93 Aligned_cols=218 Identities=20% Similarity=0.295 Sum_probs=153.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhhhccccccccccCchhhhHHHHHHhhhhcCcchhh
Q 013234 111 CALYTFVFMAMLFAVSIYGVFCSDSTWVHLCSGGLMGLLWIQSGWIGHDSGHYQVMSSRGINRIVQVLTGNCLAGISIAW 190 (447)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~~~~l~HD~~H~~~~~~~~~N~~~g~~~~~~~~~~s~~~ 190 (447)
+.+..++..++++++++++.....++++.+++++++|....++++++|||+|++++|++++|+++|.++ .++.+.|+..
T Consensus 5 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~l~He~~H~~~~~~~~~N~~~g~~~-~~~~~~p~~~ 83 (222)
T cd03507 5 RSLSYLAPDILLLALLALAASLLLSWWLWPLYWIVQGLFLTGLFVLGHDCGHGSFSDNRRLNDIVGHIL-HSPLLVPYHS 83 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhccCCcccccchhHHHHHHHHH-HHHHhCChHH
Confidence 334444444455555444433445677889999999999999999999999999999999999999977 4567889999
Q ss_pred hhhccccccccCCCCCCCCCCCCCCeeeeeccccccccchhhhhhcchhhHHhHHHhccchhHHHHHHHHHHHHHHHHHH
Q 013234 191 WKRNHNAHHIACNSLDFDPDLQHMPFFVVSSKFFNSITSCYYERKLHFDSVARFLVSYQHWTFYPVMCLARINLFAQSFL 270 (447)
Q Consensus 191 wr~~H~~HH~~tn~~~~DpD~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 270 (447)
||..|+.||++||+.++|||... .. +..... +....++....|.++.
T Consensus 84 w~~~H~~HH~~~~~~~~D~~~~p--~~---~~~~~~-----------~~~~~~y~~~~~~~~~----------------- 130 (222)
T cd03507 84 WRISHNRHHAHTGNLEGDEVWVP--VT---EEEYAE-----------LPKRLPYRLYRNPFLM----------------- 130 (222)
T ss_pred HHHHHHHHHhccCCCCCCCcccC--cC---HHHhhc-----------ccccchHHHHHHHHHH-----------------
Confidence 99999999999999999999852 11 111100 0000000000010000
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhhheeeeeeccCcccccccCCCCCCcHHHHhH
Q 013234 271 LLLSKKNVPNRVQEIFGILVFWIWYPLLISCLPNWGERVMFIVASFSVTGIQHVQFCLNHFSSNVYVGPPCSNDWFRKQT 350 (447)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~H~~~~~~~~~~~~~~w~~~ql 350 (447)
....+. +..++ ..+.+|.++..+.+.++.+.++++|..++.+..++++++|+++|+
T Consensus 131 -----------------~~~g~~-~~~~~------~~~~~~~ip~l~~~~~l~~~t~l~H~~~~~~~~~~~~w~~~~~q~ 186 (222)
T cd03507 131 -----------------LSLGWP-YYLLL------NVLLYYLIPYLVVNAWLVLITYLQHTFPDIPWYRADEWNFAQAGL 186 (222)
T ss_pred -----------------HHHHHH-HHHHH------HHHHHHHhHHHHHHHHHHeeeEecCCCCCCCCcCccccchhhhcc
Confidence 000000 00000 023345555555555888899999999998876767788889999
Q ss_pred hcccccCCCcchhhhhcccccccccccCCCCCCcCh
Q 013234 351 QGTLNIKCSSWMDWFHGGLQFQVEHHLFPRLPRCNL 386 (447)
Q Consensus 351 ~~s~~~~~~~~~~~l~~glnyHieHHLfP~vP~~~l 386 (447)
.+|+|++.+++++++++|+|||+|||+||+||+|||
T Consensus 187 ~~t~~~~~~~~~~~l~~~i~~hv~HHlfP~iP~y~l 222 (222)
T cd03507 187 LGTVDRDYGGWLNWLTHIIGTHVAHHLFPRIPHYNL 222 (222)
T ss_pred eeeeeccccHHHHHHhcCCCcccchhcCCCCCcCcC
Confidence 999999999999999999999999999999999986
No 10
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=100.00 E-value=5.9e-35 Score=279.70 Aligned_cols=264 Identities=16% Similarity=0.157 Sum_probs=166.1
Q ss_pred HHHhhcccCccCchhHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhhhccccccccccCchhhhHHH
Q 013234 97 AEFSKMGLFEKKGHCALYTFVFMAMLFAVSIYGVFCSDSTWVHLCSGGLMGLLWIQSGWIGHDSGHYQVMSSRGINRIVQ 176 (447)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~~~~l~HD~~H~~~~~~~~~N~~~g 176 (447)
+++++ |.++++...+++++..+++++++.++.....++|+.+++++++|..+..++.++|||+|++++++|++|+++|
T Consensus 4 ~~~~~--L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~He~~H~~~~~~~~~N~~~g 81 (285)
T cd03511 4 QELKQ--LMQRSDAPGLLDTALWLGALAVSGILIAWTWGSWWALPAFLVYGVLYAALFARWHECVHGTAFATRWLNDAVG 81 (285)
T ss_pred HHHHH--HhCCcchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHH
Confidence 44555 7888888888777776666655544443344556667777888988887777999999999999999999999
Q ss_pred HHHhhhhcCcchhhhhhccccccccCCCCCCCCCCCCCCeeeeeccccccccchhhhhhcchhhHHhHHHhccchhHHHH
Q 013234 177 VLTGNCLAGISIAWWKRNHNAHHIACNSLDFDPDLQHMPFFVVSSKFFNSITSCYYERKLHFDSVARFLVSYQHWTFYPV 256 (447)
Q Consensus 177 ~~~~~~~~~~s~~~wr~~H~~HH~~tn~~~~DpD~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l 256 (447)
.+. +++.+.|+..||..|+.||++||++++|||..... ++. ..+++..+.....+.
T Consensus 82 ~l~-~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~~~~-----~~~-----------------~~~~~~~~~g~~~~~- 137 (285)
T cd03511 82 QIA-GLMILLPPDFFRWSHARHHRYTQIPGRDPELAVPR-----PPT-----------------LREYLLALSGLPYWW- 137 (285)
T ss_pred HHH-HHHhcCChHHHHHHHHHHhcCcCCCCCCCCCCCCC-----chH-----------------HHHHHHHHhChHHHH-
Confidence 966 56778999999999999999999999999986311 000 011111111111100
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC---C-ch----HHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhhheeeeeec
Q 013234 257 MCLARINLFAQSFLLLLSKKNV---P-NR----VQEIFGILVFWIWYPLLISCLPNWGERVMFIVASFSVTGIQHVQFCL 328 (447)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~---~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 328 (447)
..+..+ ............. + .+ ..+....++.++.+..++...+.+..+.+|+++.++...++.+..++
T Consensus 138 ~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~wllP~l~~~~~~~~~~~~ 214 (285)
T cd03511 138 GKLRTV---FRHAFGAVSEAEKPFIPAEERPKVVREARAMLAVYAGLIALSLYLGSPLLVLVWGLPLLLGQPILRLFLLA 214 (285)
T ss_pred HHHHHH---HHHHhcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000000 0000000000000 0 11 11222223333333333233454555555555544333366666788
Q ss_pred cCcccccccCCCCCCcHHHHhHhcccccCCCcchhhhhcccccccccccCCCCCCcChhhhhHHHHHHHHH
Q 013234 329 NHFSSNVYVGPPCSNDWFRKQTQGTLNIKCSSWMDWFHGGLQFQVEHHLFPRLPRCNLRKVSPFVVELCKK 399 (447)
Q Consensus 329 ~H~~~~~~~~~~~~~~w~~~ql~~s~~~~~~~~~~~l~~glnyHieHHLfP~vP~~~lp~~~~~v~~~~~~ 399 (447)
+|.+++.. . . ...+|++...+++.++++.|+|||+|||+||+||+|+||++++.+++.+++
T Consensus 215 eH~~~~~~--~---~-----~~~~trs~~~~~~~~~l~~n~nyH~eHHl~P~vP~y~Lp~~h~~L~~~~~~ 275 (285)
T cd03511 215 EHGGCPED--A---N-----DLRNTRTTLTNPPLRFLYWNMPYHAEHHMYPSVPFHALPKLHELIKDDLPV 275 (285)
T ss_pred hcCCCCcc--c---c-----hhhhhhhhhhhHHHHHHHcCCchHHHHhcCCCCcHhHHHHHHHHHHHhCCC
Confidence 99876422 1 1 134577776678899999999999999999999999999999999987554
No 11
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=100.00 E-value=1.9e-34 Score=271.42 Aligned_cols=250 Identities=25% Similarity=0.401 Sum_probs=165.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhccccccccccCchhhhHHHHHHhhhhcCcchhhhhhccccccccCCCCCCCCCCCCC
Q 013234 135 STWVHLCSGGLMGLLWIQSGWIGHDSGHYQVMSSRGINRIVQVLTGNCLAGISIAWWKRNHNAHHIACNSLDFDPDLQHM 214 (447)
Q Consensus 135 ~~~~~~l~~~l~g~~~~~~~~l~HD~~H~~~~~~~~~N~~~g~~~~~~~~~~s~~~wr~~H~~HH~~tn~~~~DpD~~~~ 214 (447)
+|++.+++.++.|..+.+++.++|||+|+++++++++|+++|.+++ .+.+.|+..||..|+.||+++|++++|||....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~H~~~H~~~~~~~~~n~~l~~~~~-~~~~~~~~~wr~~H~~HH~~~~~~~~Dpd~~~~ 80 (257)
T PF00487_consen 2 WWWWWLLALLLLGLSFARLFGLAHDAGHGAFFRSRWLNDLLGRLLG-LPIGGPYSSWRISHNRHHHYTNNPDRDPDSWTR 80 (257)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccChHHHHHHHHHH-HHhcCCHhHhheeeeccccccCCccccCccchh
Confidence 4566677777788888888889999999999999999999999875 456778888999999999999999999999753
Q ss_pred CeeeeeccccccccchhhhhhcchhhHHhHHHhccchhHHHHHHHHHHHHH-HHHHHHHHhcCCCCch----HHHHHHHH
Q 013234 215 PFFVVSSKFFNSITSCYYERKLHFDSVARFLVSYQHWTFYPVMCLARINLF-AQSFLLLLSKKNVPNR----VQEIFGIL 289 (447)
Q Consensus 215 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~ 289 (447)
. ..... ..+.....+.+....+..+...... ....... .....+.. ........
T Consensus 81 ~---~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 139 (257)
T PF00487_consen 81 R---LPPHQ-----------------PWRPLFSYRRFLFRFLLSLFFPIWYFIFFFRKR-RMRRRRKRPRRYLILAALLL 139 (257)
T ss_pred h---hhhhh-----------------hhhhhhhhhhccccccccccccchhhhhhcccc-ccccccccchhHHHHHHHhh
Confidence 0 00000 0011122222222222111101000 0000000 00001111 11111122
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHhhhheeeeeeccCcccccccCCCCCCcHHHHhHhcccccCCCcchhhhhccc
Q 013234 290 VFWIWYPLLISCLPNWGERVMFIVASFSVTGIQHVQFCLNHFSSNVYVGPPCSNDWFRKQTQGTLNIKCSSWMDWFHGGL 369 (447)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~H~~~~~~~~~~~~~~w~~~ql~~s~~~~~~~~~~~l~~gl 369 (447)
+.++.+...+.....+..+++++++..+...++.+..+++|.+++. ....+..++...|+.+|+|...+.+++|+++|+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (257)
T PF00487_consen 140 ALLLALLAALFFFSPWWALLLFLLPFLIGSFFLAFVTYLEHYGLDP-DDNEDTRDFYYRQLPGSSNVHNSWWLNWLTGGL 218 (257)
T ss_pred hhhhhhhhhhcccccccchhHHHHHHhHHHHHHHHhhHHhhhcccc-cccccccceecccccccccccCchhhhccccCC
Confidence 2222222222223334555666666655555666666788998875 223456788888999999988889999999999
Q ss_pred ccccccccCCCCCCcChhhhhHHHHHHHHHcCCCcccc
Q 013234 370 QFQVEHHLFPRLPRCNLRKVSPFVVELCKKHNLPYNIV 407 (447)
Q Consensus 370 nyHieHHLfP~vP~~~lp~~~~~v~~~~~~~g~~y~~~ 407 (447)
|||+|||+||+||+++||++++++++.|+++|++|+++
T Consensus 219 ~~H~~HHl~P~vp~~~l~~~~~~~~~~~~~~~~~y~~~ 256 (257)
T PF00487_consen 219 NYHIEHHLFPGVPWYNLPEAHPILKEVCPEYGVPYNEF 256 (257)
T ss_pred CChHHhCCCCCcCHHHHHHHHHHHHHHHHHcCCceecC
Confidence 99999999999999999999999999999999999975
No 12
>PLN02579 sphingolipid delta-4 desaturase
Probab=100.00 E-value=2.5e-31 Score=254.29 Aligned_cols=277 Identities=16% Similarity=0.144 Sum_probs=166.4
Q ss_pred ccchhHHHHHHHH-----hhcccCccCchhHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH-HHHHhhhccc
Q 013234 87 EASKDYRKLVAEF-----SKMGLFEKKGHCALYTFVFMAMLFAVSIYGVFCSDSTWVHLCSGGLMGLLW-IQSGWIGHDS 160 (447)
Q Consensus 87 ~~~~~y~~l~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~-~~~~~l~HD~ 160 (447)
..+++.+++|+++ +.++++.+++...+..++++++.+++++++ ...+|++.+++++++|.+. +.+..++|||
T Consensus 18 ~~~~~h~~rr~~il~~ype~~~l~~~d~~~~~k~~~~v~~~~~~~~l~--~~~~w~~~l~~a~~~~g~~~~~lf~~~HD~ 95 (323)
T PLN02579 18 YTDEPHASRRREILSKYPQIKELFGPDPWAFPKIAAVVLLQLCTATLL--HDAGWPKILLVAYFFGGFLNHNLFLAIHEL 95 (323)
T ss_pred CchhhHHHHHHHHHHhchHhhcccCCCchHHHHHHHHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677788777 357788777777766665555555333322 3456776666555554444 5555578999
Q ss_pred cccccccCchhhhHHHHHHhhhhcCcchh-hhhhccccccccCCCCCCCCCCCCCCeeeeeccccccccchhhhhhcchh
Q 013234 161 GHYQVMSSRGINRIVQVLTGNCLAGISIA-WWKRNHNAHHIACNSLDFDPDLQHMPFFVVSSKFFNSITSCYYERKLHFD 239 (447)
Q Consensus 161 ~H~~~~~~~~~N~~~g~~~~~~~~~~s~~-~wr~~H~~HH~~tn~~~~DpD~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 239 (447)
+|+++|+++++|+++|.+. +++.|.|+. |||..|+.||++||+++.|||+.+.. +.
T Consensus 96 ~Hg~~f~~~~~N~~lg~~~-~l~~g~~~~~~~~~~H~~HH~~~n~~~~D~Di~t~~----E~------------------ 152 (323)
T PLN02579 96 SHNLAFKTPVYNRWLGIFA-NLPIGIPMSVTFQKYHLEHHRFQGVDGIDMDIPSQG----EA------------------ 152 (323)
T ss_pred hHhhhcCCHHHHHHHHHHH-HHhhcCCHhHHHHHHHHHHccCCCCCCCCCCCCchh----hH------------------
Confidence 9999999999999999965 677888887 79999999999999999999987421 10
Q ss_pred hHHhHHHhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhh
Q 013234 240 SVARFLVSYQHWTFYPVMCLARINLFAQSFLLLLSKKNVPNRVQEIFGILVFWIWYPLLISCLPNWGERVMFIVASFSVT 319 (447)
Q Consensus 240 ~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (447)
+.+......+.+ ..+..+ +...+....+... ...++++.+++..++.++++..+| |..+ +|++++..++
T Consensus 153 ---~l~~~~~~~~~~--~~~~~~---f~~~rp~~~~~~~-~~~~~~in~~~~~~~~~~l~~~~G-~~~l-lyl~~~~~~~ 221 (323)
T PLN02579 153 ---RLVRNTLSKIVW--VFLQLF---FYALRPLFVNPKP-PGLWEFINLLTQIAFDAALVYFAG-WKSL-AYLILSTFLG 221 (323)
T ss_pred ---HHHHHHHHHHHH--HHHHHH---HHHhhHHhhccCC-chHHHHHHHHHHHHHHHHHHHHHC-HHHH-HHHHHHHHHh
Confidence 111111000000 000111 1111111111111 122334433333333333333345 3333 3444443333
Q ss_pred hh---eeeeeeccCcccccccCCCCCCcHHHHhHhcccccCCCcchhhhhcccccccccccCCCCCCcChhhhhHHHHHH
Q 013234 320 GI---QHVQFCLNHFSSNVYVGPPCSNDWFRKQTQGTLNIKCSSWMDWFHGGLQFQVEHHLFPRLPRCNLRKVSPFVVEL 396 (447)
Q Consensus 320 ~~---l~~~~~~~H~~~~~~~~~~~~~~w~~~ql~~s~~~~~~~~~~~l~~glnyHieHHLfP~vP~~~lp~~~~~v~~~ 396 (447)
+- +.-.+..+|+..... +.|. .+..+++|+++|+|||.|||+||+||+++||+++++..|+
T Consensus 222 ~~lhp~~g~~~~ehy~~~~~--------------~ety--syyg~ln~l~~NigYH~eHH~fP~IP~~~Lp~l~~~~pe~ 285 (323)
T PLN02579 222 GGLHPMAGHFISEHYVFNPG--------------QETY--SYYGPLNLLTWNVGYHNEHHDFPRIPGSKLHKVKEIAPEY 285 (323)
T ss_pred cccccccceeeccceeccCC--------------CCce--eehhHHHHHhhcccccHhhcCCCCCchhhHHHHHHhCHHH
Confidence 31 222334456543221 1122 2234669999999999999999999999999999988887
Q ss_pred HHHcCCCcccccHHHHHHHHHH
Q 013234 397 CKKHNLPYNIVSFWKSNAMTVE 418 (447)
Q Consensus 397 ~~~~g~~y~~~~~~~~~~~~~~ 418 (447)
.+. +|++ +|+...+.+.+.
T Consensus 286 y~~--l~~~-~sw~~~~~~fi~ 304 (323)
T PLN02579 286 YDN--LKSY-KSWSQVIYMYIM 304 (323)
T ss_pred HhC--CCCc-CcHHHHHHHHHc
Confidence 654 6655 577788777765
No 13
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=100.00 E-value=1.1e-31 Score=253.87 Aligned_cols=269 Identities=16% Similarity=0.157 Sum_probs=165.2
Q ss_pred hhHHHHHHHHhhcccCccCchhHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH-HHHHhhhccccccccccC
Q 013234 90 KDYRKLVAEFSKMGLFEKKGHCALYTFVFMAMLFAVSIYGVFCSDSTWVHLCSGGLMGLLW-IQSGWIGHDSGHYQVMSS 168 (447)
Q Consensus 90 ~~y~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~-~~~~~l~HD~~H~~~~~~ 168 (447)
++|.|+|+ |+++++...++.++.+++++++++++. ..+||+.+++++++|... ..++.++|||+|++++|+
T Consensus 3 ~~~pei~~------L~~~~~~~~~~~~~~v~~~~~~~~~l~--~~sw~~~ll~a~vi~~~~~~~l~~l~Hd~~H~~~f~~ 74 (289)
T cd03508 3 AKYPEIKK------LFGPDPLTKWVVLGVVLLQIITAYLLR--DSSWWKILLVAYFFGGTINHSLFLAIHEISHNLAFGK 74 (289)
T ss_pred ccchHHHH------hcCCCcchHHHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCC
Confidence 44555555 999999999988888888888876553 456776666666666655 444558999999999999
Q ss_pred chhhhHHHHHHhhhhcCcchh-hhhhccccccccCCCCCCCCCCCCCCeeeeeccccccccchhhhhhcchhhHHhHHHh
Q 013234 169 RGINRIVQVLTGNCLAGISIA-WWKRNHNAHHIACNSLDFDPDLQHMPFFVVSSKFFNSITSCYYERKLHFDSVARFLVS 247 (447)
Q Consensus 169 ~~~N~~~g~~~~~~~~~~s~~-~wr~~H~~HH~~tn~~~~DpD~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (447)
+++|+++|.+. +++.|.|+. +||..|+.||++||+++.|||+.+. ...+. +..
T Consensus 75 ~~~N~~~g~~~-~~~~g~p~~~~~r~~H~~HH~~~n~~~~DpDi~~~----~~~~l---------------------~~~ 128 (289)
T cd03508 75 PLWNRLFGIFA-NLPIGVPYSISFKKYHLEHHRYLGEDGLDTDIPTE----FEGKL---------------------FST 128 (289)
T ss_pred hHHHHHHHHHH-HHHhcCChhhHHHHHHHHhccCCCCCCCCCCcchH----HHHHH---------------------HhC
Confidence 99999999965 678888998 5999999999999999999999851 11111 110
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhhh---eee
Q 013234 248 YQHWTFYPVMCLARINLFAQSFLLLLSKKNVPNRVQEIFGILVFWIWYPLLISCLPNWGERVMFIVASFSVTGI---QHV 324 (447)
Q Consensus 248 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~ 324 (447)
......+ ..+.......+....+. .+....++...+...++..+++..+|.+.. +|+++....+.. +..
T Consensus 129 ~~g~~~~-----~~~~~~~~~~rp~~~~~-~~~~~~~~~n~~~~~~~~~~l~~~~G~~~~--lyll~~~~~~~~~~p~~g 200 (289)
T cd03508 129 VLGKAIW-----VTLQPFFYALRPLFVRP-KPPTRLEVINIVVQITFDYLIYYFFGWKSL--AYLLLGSFLGGGLHPLAG 200 (289)
T ss_pred chHHHHH-----HHHHHHHHHhcccccCC-CcchhHHHHHHHHHHHHHHHHHHHhCcHHH--HHHHHHHHHHHhhccccc
Confidence 0000000 00000000111011111 112233333333333332333334453322 233333222221 112
Q ss_pred eeeccCcccccccCCCCCCcHHHHhHhcccccCCCcchhhhhcccccccccccCCCCCCcChhhhhHHHHHHHHHcCCCc
Q 013234 325 QFCLNHFSSNVYVGPPCSNDWFRKQTQGTLNIKCSSWMDWFHGGLQFQVEHHLFPRLPRCNLRKVSPFVVELCKKHNLPY 404 (447)
Q Consensus 325 ~~~~~H~~~~~~~~~~~~~~w~~~ql~~s~~~~~~~~~~~l~~glnyHieHHLfP~vP~~~lp~~~~~v~~~~~~~g~~y 404 (447)
.+..||..... ....|+++- .+++++++|+|||.|||+||+||+|+||+++++.++..++ .+
T Consensus 201 ~~i~Eh~~~~~-------------~~~~t~S~y--~~~~~~~~n~~yH~~HH~~p~iP~~~Lp~~~~~~~~~~~~---~~ 262 (289)
T cd03508 201 HFISEHYVFTG-------------KGQETYSYY--GPLNLLTFNVGYHNEHHDFPYIPGTRLPKLRKIAPEFYDN---LP 262 (289)
T ss_pred ccccccccccc-------------cCcCCccch--HHHHHHhhccChHHHhcCCCCCCcccHHHHHHHCHHHHhC---CC
Confidence 23446654321 112233332 3679999999999999999999999999999999888776 23
Q ss_pred ccccHHHHHHHHHH
Q 013234 405 NIVSFWKSNAMTVE 418 (447)
Q Consensus 405 ~~~~~~~~~~~~~~ 418 (447)
...||.+.+++.+.
T Consensus 263 ~~~~y~~v~~~~~~ 276 (289)
T cd03508 263 QHTSWPRVLYDFIM 276 (289)
T ss_pred cCCCHHHHHHHHhc
Confidence 34588888877654
No 14
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=100.00 E-value=1.2e-32 Score=249.74 Aligned_cols=187 Identities=18% Similarity=0.203 Sum_probs=132.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhccccccccccCchhhhHHHHHHhhhhcCcchhhhhhccccccccCCCCCCCCCCCCC
Q 013234 135 STWVHLCSGGLMGLLWIQSGWIGHDSGHYQVMSSRGINRIVQVLTGNCLAGISIAWWKRNHNAHHIACNSLDFDPDLQHM 214 (447)
Q Consensus 135 ~~~~~~l~~~l~g~~~~~~~~l~HD~~H~~~~~~~~~N~~~g~~~~~~~~~~s~~~wr~~H~~HH~~tn~~~~DpD~~~~ 214 (447)
+++...++.++.|+...+++.++|||+|++++++|++|+++|.+. +++.+.|+..||..|+.||++||++++|||..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~Hda~H~~~~~~~~~N~~~g~~~-~~~~~~~~~~w~~~H~~HH~~~~~~~~DpD~~-- 96 (207)
T cd03514 20 SYLPLWVCFILNTLSLHLAGTVIHDASHKAASRNRWINELIGHVS-AFFLGFPFPVFRRVHMQHHAHTNDPEKDPDHF-- 96 (207)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHH-HHHHhCCHHHHHHHHHHHhcCcCcCCcCccHH--
Confidence 366667777778888888888999999999999999999999976 46788999999999999999999999999975
Q ss_pred CeeeeeccccccccchhhhhhcchhhHHhHHHhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 013234 215 PFFVVSSKFFNSITSCYYERKLHFDSVARFLVSYQHWTFYPVMCLARINLFAQSFLLLLSKKNVPNRVQEIFGILVFWIW 294 (447)
Q Consensus 215 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (447)
..+ .... ..+.++. +
T Consensus 97 --------~~~-----------------~~~~-------------------------------------~~~~~~~---~ 111 (207)
T cd03514 97 --------LLE-----------------WLVA-------------------------------------RSLFITL---L 111 (207)
T ss_pred --------HHH-----------------HHHH-------------------------------------HHHHHHH---H
Confidence 000 0000 0000000 0
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHhhhheee-eeeccCcccccccCCCCCCcHHHHhHhcccccCCCcchhhhhccccccc
Q 013234 295 YPLLISCLPNWGERVMFIVASFSVTGIQHV-QFCLNHFSSNVYVGPPCSNDWFRKQTQGTLNIKCSSWMDWFHGGLQFQV 373 (447)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~H~~~~~~~~~~~~~~w~~~ql~~s~~~~~~~~~~~l~~glnyHi 373 (447)
+.... ..+.+..+++|+++..+.+.++.+ ..+.+|.+.+. +.+|.. ++... +++++|+++|+|||+
T Consensus 112 ~~~~~-~~~~~~~~l~~~iP~l~~~~~l~~~~~~~~H~~~~~------~~~~~~-----~~~~~-~~l~~~l~~~~nyH~ 178 (207)
T cd03514 112 VIAIL-FGFLWELLNLWFLPALIVGTYLALFFDWLPHHPFEE------TQRWDN-----SRVYP-SKLLNPLIMGQNYHL 178 (207)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHheeeCccCCCC------ccchhh-----hhccc-chhHheeecCCchhH
Confidence 00001 112233344455554444445554 45678886321 224422 34333 678899999999999
Q ss_pred ccccCCCCCCcChhhhhHHHHHHHHHcCC
Q 013234 374 EHHLFPRLPRCNLRKVSPFVVELCKKHNL 402 (447)
Q Consensus 374 eHHLfP~vP~~~lp~~~~~v~~~~~~~g~ 402 (447)
|||+||+||+||||++++.+++..++.|+
T Consensus 179 ~HHL~P~IP~y~Lp~a~~~~~~~~~~~~~ 207 (207)
T cd03514 179 VHHLWPSIPWYRYPEAYYANKPLLDARGC 207 (207)
T ss_pred HHhCCCCCchhhhHHHHHHhHHHHhhcCC
Confidence 99999999999999999999999999875
No 15
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=99.97 E-value=1.1e-30 Score=247.73 Aligned_cols=244 Identities=13% Similarity=0.049 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccCchhhhHHHHHHhhhhcCcchhhhhhccccccccCC--CCCCCCCCCCCCee
Q 013234 140 LCSGGLMGLLWIQSGWIGHDSGHYQVMSSRGINRIVQVLTGNCLAGISIAWWKRNHNAHHIACN--SLDFDPDLQHMPFF 217 (447)
Q Consensus 140 ~l~~~l~g~~~~~~~~l~HD~~H~~~~~~~~~N~~~g~~~~~~~~~~s~~~wr~~H~~HH~~tn--~~~~DpD~~~~p~~ 217 (447)
.++.+++|+.....+.++|||+|++++|+|++|+++|.+.. ....|+.+||.+|+.||++|| ++++|||..+.+
T Consensus 28 ~~~~~~~~~~~~~~~~l~Hd~~Hg~~~~~~~~N~~~g~~~~--~l~~p~~~wr~~H~~HH~~~nl~~~~~Dpd~~~~~-- 103 (288)
T cd03509 28 PLATLLLIPLAALHSSLQHELLHGHPTRSRWVNEALGYPPL--ALWYPYTRYRDTHLAHHRDEDLTDPGDDPESNYLS-- 103 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcccChHHHHHHHHHHH--HHhcCHHHHHHHHHHHcCCCCCCCCCCCCccceec--
Confidence 34566666665555679999999999999999999998643 334789999999999999999 446899987532
Q ss_pred eeeccccccccchhhhhhcchhhHHh-HHHhccchhHHHHH-HHHHHHHHHHHHHHHHhcCCCCchHHHHHH-HHHHH-H
Q 013234 218 VVSSKFFNSITSCYYERKLHFDSVAR-FLVSYQHWTFYPVM-CLARINLFAQSFLLLLSKKNVPNRVQEIFG-ILVFW-I 293 (447)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~ 293 (447)
+...... ....+ ....+|+.+...++ ....+......-...+.++. ++...+.. .++.. .
T Consensus 104 ---~~~~~~~-----------~~~~r~~~~~~~~~~~~~l~gp~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 167 (288)
T cd03509 104 ---PEQWARL-----------PRWQRALLRANNTLLGRLILGPPLGLIAFARDEFRALRAGD--RAALRAWLLHAALLAP 167 (288)
T ss_pred ---HHHHhhC-----------cHHHHHHHHHhhcchhHHhhhhHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHH
Confidence 2222111 11112 22333444332221 11111111111111112211 11111111 11111 1
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHhhh-heeeeeeccCcccccccCCCCCCcHHHHhHhcccccCCCcchhhhhcccccc
Q 013234 294 WYPLLISCLPNWGERVMFIVASFSVTG-IQHVQFCLNHFSSNVYVGPPCSNDWFRKQTQGTLNIKCSSWMDWFHGGLQFQ 372 (447)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~H~~~~~~~~~~~~~~w~~~ql~~s~~~~~~~~~~~l~~glnyH 372 (447)
.+..+....+ + ..++|+++....+. +..+..+.||...... . ..|..++.+++++|+++|+|||
T Consensus 168 ~l~~~~~~~~-~-~~~~~~l~~~~la~~~~~~~~~~Eh~~~~~~--~-----------~rs~~~~~~~~~~~l~~ninyH 232 (288)
T cd03509 168 LLAWLQLSAG-I-PWWAYLLAVYYPALSLAKIRTFLEHRAHERP--R-----------GRTVINEAGGPLRLLFLNNNLH 232 (288)
T ss_pred HHHHHHHHhh-H-HHHHHHHHHHHHHHHHHhhchHhhccCCCCc--c-----------CCceeeeCcHHHHHHHhcCCch
Confidence 1111111111 1 12233332322222 4556667788764321 0 1233345566789999999999
Q ss_pred cccccCCCCCCcChhhhhHHHHHHHHHcCCCcccccHHHHHHHHHH
Q 013234 373 VEHHLFPRLPRCNLRKVSPFVVELCKKHNLPYNIVSFWKSNAMTVE 418 (447)
Q Consensus 373 ieHHLfP~vP~~~lp~~~~~v~~~~~~~g~~y~~~~~~~~~~~~~~ 418 (447)
+|||++|+||+|+||++++.+++.+.+.+.-|...+|.+.++...+
T Consensus 233 ~~HH~~P~vP~y~Lp~~h~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 278 (288)
T cd03509 233 VVHHDLPTLPWYDLPRLYRARRDAYLRRNGGFVYRGYGELFRRHAW 278 (288)
T ss_pred HhhcCCCCCCcccHHHHHHHhHHHHhhcCCCccCCCHHHHHHHHhc
Confidence 9999999999999999999999998886766776788777666554
No 16
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=99.97 E-value=1.1e-30 Score=230.54 Aligned_cols=162 Identities=21% Similarity=0.231 Sum_probs=123.9
Q ss_pred HHhhcCchhHHHHHHHHHHHHHHHHHHhhhccccccccccCchhhhHHHHHHhhhhcCcchhhhhhccccccccCCCCCC
Q 013234 128 YGVFCSDSTWVHLCSGGLMGLLWIQSGWIGHDSGHYQVMSSRGINRIVQVLTGNCLAGISIAWWKRNHNAHHIACNSLDF 207 (447)
Q Consensus 128 ~~~~~~~~~~~~~l~~~l~g~~~~~~~~l~HD~~H~~~~~~~~~N~~~g~~~~~~~~~~s~~~wr~~H~~HH~~tn~~~~ 207 (447)
++....++|++.+++++++|..+.+++.++|||+|++++|++++|+++|.++.+++.+.++..||..|+.||+++|+ ++
T Consensus 10 ~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~Hea~H~~l~~~~~~N~~~g~~~~~~p~~~~~~~~r~~H~~HH~~~~~-~~ 88 (175)
T cd03510 10 ALALAWPNWLAYLLAVLLIGARQRALAILMHDAAHGLLFRNRRLNDFLGNWLAAVPIFQSLAAYRRSHLKHHRHLGT-ED 88 (175)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhhhhCCHHHHHHHHHHHhCccCC-CC
Confidence 33344568888999999999999999999999999999999999999998776677889999999999999999999 89
Q ss_pred CCCCCCCCeeeeeccccccccchhhhhhcchhhHHhHHHhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 013234 208 DPDLQHMPFFVVSSKFFNSITSCYYERKLHFDSVARFLVSYQHWTFYPVMCLARINLFAQSFLLLLSKKNVPNRVQEIFG 287 (447)
Q Consensus 208 DpD~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (447)
|||..
T Consensus 89 Dpd~~--------------------------------------------------------------------------- 93 (175)
T cd03510 89 DPDLA--------------------------------------------------------------------------- 93 (175)
T ss_pred CCcHH---------------------------------------------------------------------------
Confidence 99852
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhh-heeeeeeccCcccccccCCCCCCcHHHHhHhcccccCCCcchhhhh
Q 013234 288 ILVFWIWYPLLISCLPNWGERVMFIVASFSVTG-IQHVQFCLNHFSSNVYVGPPCSNDWFRKQTQGTLNIKCSSWMDWFH 366 (447)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~H~~~~~~~~~~~~~~w~~~ql~~s~~~~~~~~~~~l~ 366 (447)
..+.+|+++..++.. +..+....+|.+.+...... ..+||+...+++.+++.
T Consensus 94 ------------------~~~~~W~~P~~~~~~~~~~~~~~~eH~~~~~~~~~~---------~~~tr~~~~~~~~r~l~ 146 (175)
T cd03510 94 ------------------LYLLLWLVPLLTVFPLIGRIREIAEHAGVPADEDPD---------ARNTRTTFGGWIERLLF 146 (175)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcch---------hhcCccccccHHHHHHH
Confidence 000111111111111 11223446898765431110 26788988888888887
Q ss_pred c--ccccccccccCCCCCCcChhhhhHH
Q 013234 367 G--GLQFQVEHHLFPRLPRCNLRKVSPF 392 (447)
Q Consensus 367 ~--glnyHieHHLfP~vP~~~lp~~~~~ 392 (447)
+ |+|||.|||+||+||+++||+++++
T Consensus 147 ~p~~~~YH~eHHl~P~vP~~~Lp~~h~~ 174 (175)
T cd03510 147 APHNINYHLEHHLFPAVPFYNLPKAHRI 174 (175)
T ss_pred cccCCcHHHHHhCCcCCchhhHHHHHHh
Confidence 5 9999999999999999999999875
No 17
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=99.96 E-value=2e-28 Score=222.73 Aligned_cols=188 Identities=18% Similarity=0.189 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccc-cCchhhhHHHHHHhhhhcCcchhhhhhccccccccCCCCCCCCCCCCCCeee
Q 013234 140 LCSGGLMGLLWIQSGWIGHDSGHYQVM-SSRGINRIVQVLTGNCLAGISIAWWKRNHNAHHIACNSLDFDPDLQHMPFFV 218 (447)
Q Consensus 140 ~l~~~l~g~~~~~~~~l~HD~~H~~~~-~~~~~N~~~g~~~~~~~~~~s~~~wr~~H~~HH~~tn~~~~DpD~~~~p~~~ 218 (447)
+++.++.|....++..++|||+|++++ +++++|+++|.+...+..|.|+..||..|++||++||++ +|||+...+
T Consensus 33 ~~~~~~~g~l~~glfi~~HDa~Hg~~~~~~~~~N~~iG~~~~~l~~g~~~~~~~~~H~~HH~~~~~~-~DpD~~~~~--- 108 (225)
T cd03513 33 AAVVLLQTFLHTGLFIIAHDAMHGSLAPGNPRLNRAIGRLCLFLYAGFSYDRLLRKHHLHHRHPGTA-KDPDFHKGN--- 108 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHcCCCCCC-CCCCCCCCC---
Confidence 344444566666776799999999999 799999999997766778899999999999999999996 999997421
Q ss_pred eeccccccccchhhhhhcchhhHHhHHHhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHH
Q 013234 219 VSSKFFNSITSCYYERKLHFDSVARFLVSYQHWTFYPVMCLARINLFAQSFLLLLSKKNVPNRVQEIFGILVFWIWYPLL 298 (447)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (447)
+. + ..+|+..+ + . +. -+....+.+...+..+..+
T Consensus 109 --~~---~--------------~~~wy~~f-------~---~--------------~y---~~~~qli~l~ivw~~~l~~ 142 (225)
T cd03513 109 --PS---G--------------FLPWYLHF-------M---S--------------NY---FGWRQLAILAAVWLLLLGL 142 (225)
T ss_pred --CC---C--------------hHHHHHHH-------H---H--------------hH---hHHHHHHHHHHHHHHHHHH
Confidence 00 0 00111110 0 0 00 0111121122222222222
Q ss_pred hhcCCchhHHHHHHHHHHHhhh-heeee-eeccCcccccccCCCCCCcHHHHhHhcccccCCCcchhhhh-ccccccccc
Q 013234 299 ISCLPNWGERVMFIVASFSVTG-IQHVQ-FCLNHFSSNVYVGPPCSNDWFRKQTQGTLNIKCSSWMDWFH-GGLQFQVEH 375 (447)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~-~l~~~-~~~~H~~~~~~~~~~~~~~w~~~ql~~s~~~~~~~~~~~l~-~glnyHieH 375 (447)
+ ..+. ..++.+++++.++.+ .+.++ +++.|...+....+ ..++++++.++++++++ .+++||.||
T Consensus 143 ~-~~~~-~~~~~~~~~P~l~~~~~l~~f~T~lpH~~~~~~~~~----------~~~a~~~~~~~~~~~l~c~~fgyH~eH 210 (225)
T cd03513 143 G-SAPL-ANLLLFWALPLILSSLQLFYFGTWLPHRPGRGGFAD----------RHRARSSRLSPVLSFLTCYHFGYHHEH 210 (225)
T ss_pred H-cccH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------cccceecCccHHHHHHHHHhcCcchhh
Confidence 1 1233 334455555555555 44444 56778754432111 12677777788999876 667799999
Q ss_pred ccCCCCCCcChhhh
Q 013234 376 HLFPRLPRCNLRKV 389 (447)
Q Consensus 376 HLfP~vP~~~lp~~ 389 (447)
|+||+||+|+||++
T Consensus 211 H~fP~~Pw~~Lp~~ 224 (225)
T cd03513 211 HLSPSTPWWRLPEL 224 (225)
T ss_pred ccCCCCCcccCccc
Confidence 99999999999987
No 18
>KOG2987 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=99.92 E-value=1e-24 Score=192.29 Aligned_cols=269 Identities=17% Similarity=0.195 Sum_probs=167.0
Q ss_pred cchhHHHHHHHHhhcccCccCchhHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHH-HHHHHHHHhhhccccccccc
Q 013234 88 ASKDYRKLVAEFSKMGLFEKKGHCALYTFVFMAMLFAVSIYGVFCSDSTWVHLCSGGLM-GLLWIQSGWIGHDSGHYQVM 166 (447)
Q Consensus 88 ~~~~y~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-g~~~~~~~~l~HD~~H~~~~ 166 (447)
+-+.|.++|+ |+++++...++.++++++.+.+++.+- ..+|.+.+..+... |+.-+.+....||.+|+..|
T Consensus 26 IL~kyPeIk~------Lfg~dp~~kwvv~~~Vi~Q~~~~~ll~--dl~W~~il~~AYf~gg~iNhsl~LAIHeiSHN~aF 97 (324)
T KOG2987|consen 26 ILAKYPEIKS------LFGPDPNLKWVVLGMVILQILAAYLLR--DLDWKWILFIAYFFGGFINHSLTLAIHEISHNLAF 97 (324)
T ss_pred HHHhChHHHH------HhCCCcchHHHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHhhhhhchhHHHHHHHhhhhhhc
Confidence 4455666666 899999999888888888777765442 23444444434444 45445555577999999999
Q ss_pred cC--chhhhHHHHHHhhhhcCcchh-hhhhccccccccCCCCCCCCCCCCCCeeeeeccccccccchhhhhhcchhhHHh
Q 013234 167 SS--RGINRIVQVLTGNCLAGISIA-WWKRNHNAHHIACNSLDFDPDLQHMPFFVVSSKFFNSITSCYYERKLHFDSVAR 243 (447)
Q Consensus 167 ~~--~~~N~~~g~~~~~~~~~~s~~-~wr~~H~~HH~~tn~~~~DpD~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (447)
.+ +-.||++|. ++++++|.|++ .+|..|..||+|.++++.|.|+.+. .+.+.+.+. ..+
T Consensus 98 g~~rpl~NR~~g~-fANLPigvP~siSFkkYHleHHry~G~DgiDtDvPT~----~Ea~~f~t~-------------~~K 159 (324)
T KOG2987|consen 98 GTNRPLYNRIFGF-FANLPIGVPMSISFKKYHLEHHRYLGVDGIDTDVPTR----FEAWLFDTA-------------FGK 159 (324)
T ss_pred ccCchHHHHHHHH-hhcCcccCceeeeehhhhhHHhHhcCCccccCCCCch----hheehhhhh-------------hHH
Confidence 88 889999998 55899998887 4899999999999999999999752 222221110 001
Q ss_pred -HHHhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhh--
Q 013234 244 -FLVSYQHWTFYPVMCLARINLFAQSFLLLLSKKNVPNRVQEIFGILVFWIWYPLLISCLPNWGERVMFIVASFSVTG-- 320 (447)
Q Consensus 244 -~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 320 (447)
.+..+|.+++ .++.++-.++ +....+++..++...+-.+++..+| |-. +.|++.+.++++
T Consensus 160 ~iw~~lQpfFY--------------~fRPl~i~pk-p~t~me~iN~iiQ~~fd~li~~f~G-~ks-l~Yll~~s~lg~gL 222 (324)
T KOG2987|consen 160 LIWVTLQPFFY--------------AFRPLFIYPK-PPTDMEFINTIIQLSFDLLIVYFFG-WKS-LAYLLASSFLGMGL 222 (324)
T ss_pred HHHHHHHHHHH--------------hhhhheecCC-CchHHHHHHHHHHHHHHHHHHHHHh-HHH-HHHHHHHHHHcCCC
Confidence 1112232221 1222222222 2344566655555444434443445 333 344444444433
Q ss_pred -heeeeeeccCcccccccCCCCCCcHHHHhHhcccccCCCcchhhhhcccccccccccCCCCCCcChhhhhHHHHHHHHH
Q 013234 321 -IQHVQFCLNHFSSNVYVGPPCSNDWFRKQTQGTLNIKCSSWMDWFHGGLQFQVEHHLFPRLPRCNLRKVSPFVVELCKK 399 (447)
Q Consensus 321 -~l~~~~~~~H~~~~~~~~~~~~~~w~~~ql~~s~~~~~~~~~~~l~~glnyHieHHLfP~vP~~~lp~~~~~v~~~~~~ 399 (447)
..+-.|..+|+..... . -++++-..+||++.|.+||+|||.||.||..+||++.++-.|+.+.
T Consensus 223 HP~aGHFisEHY~f~k~---~-------------ETySYYGplN~~tfNvGYH~EHHDFP~Ipg~~Lp~Vr~iApEyYd~ 286 (324)
T KOG2987|consen 223 HPIAGHFISEHYMFKKG---Q-------------ETYSYYGPLNLLTFNVGYHVEHHDFPYIPGSRLPKVREIAPEYYDN 286 (324)
T ss_pred CcccchhhHhhhhhcCC---c-------------cceeeecceeeEEEecccccccccCCCCCccccHHHHHhhHHHhcC
Confidence 2333455566643221 1 1222234689999999999999999999999999998888886542
Q ss_pred cCCCcccccHHHHHHHHHH
Q 013234 400 HNLPYNIVSFWKSNAMTVE 418 (447)
Q Consensus 400 ~g~~y~~~~~~~~~~~~~~ 418 (447)
+|- ..|+.+.+.+.+.
T Consensus 287 --lp~-~~Sw~~vlydfi~ 302 (324)
T KOG2987|consen 287 --LPQ-HKSWVGVLYDFIM 302 (324)
T ss_pred --chh-hchHHHHHHHHHc
Confidence 332 2366666666554
No 19
>KOG0537 consensus Cytochrome b5 [Energy production and conversion]
Probab=99.89 E-value=4.2e-24 Score=174.78 Aligned_cols=81 Identities=35% Similarity=0.623 Sum_probs=75.7
Q ss_pred CCCCcCHHHHcccCCCCCeEEEEcCeEEecCCCcccccccccccccccCCchhhHHHhc-CcHHHHhhhhhccccccccc
Q 013234 4 SKKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVAY-HPGAAWQYLDKFFTGYYLED 82 (447)
Q Consensus 4 ~~~~~~~~e~~~~~~~~~~~v~i~g~vydvt~f~~~hPgg~~~l~~~~g~D~t~~f~~~-H~~~~~~~l~~~~vg~~~~~ 82 (447)
..+.||.+|+++||++++|||+|+|+|||||+|+++||||.++|+.+||+|+|+.|+.. |+..|++||++|+||+..+.
T Consensus 3 ~~k~~~~~EV~kHn~~~d~Wvii~gkVYDvT~Fl~eHPGG~~vLl~~AGkDaT~~F~~~gHS~~A~~ml~~y~ig~~~~~ 82 (124)
T KOG0537|consen 3 DLKYYTLSEVAKHNKKDDCWVIIHGKVYDVTSFLDEHPGGEDVLLEYAGKDATEAFEDVGHSKDAREMLEEYYIGEVPTT 82 (124)
T ss_pred ccccccHHHHHhhcCCCCeEEEECCEEEeccchhhhCCChHHHHHHHhchhhHHhccccCCcHHHHHHhhhcccccccCC
Confidence 46899999999999999999999999999999999999999999999999999999975 99999999999999976655
Q ss_pred cc
Q 013234 83 YT 84 (447)
Q Consensus 83 ~~ 84 (447)
.+
T Consensus 83 ~~ 84 (124)
T KOG0537|consen 83 AR 84 (124)
T ss_pred Cc
Confidence 43
No 20
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=99.81 E-value=7.9e-19 Score=168.84 Aligned_cols=213 Identities=16% Similarity=0.144 Sum_probs=123.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHh-hhccccccccccCchhhhHHHHHHhhhhcCcchhhhhhccc-cccccCCCCCCCCC
Q 013234 133 SDSTWVHLCSGGLMGLLWIQSGW-IGHDSGHYQVMSSRGINRIVQVLTGNCLAGISIAWWKRNHN-AHHIACNSLDFDPD 210 (447)
Q Consensus 133 ~~~~~~~~l~~~l~g~~~~~~~~-l~HD~~H~~~~~~~~~N~~~g~~~~~~~~~~s~~~wr~~H~-~HH~~tn~~~~DpD 210 (447)
..+++..+.+++.+|++....+. .+||++| |++++|+++|.++. ... ++..|+..|+ .||+++++ ++|||
T Consensus 66 ~~~~~~~~~~~~~~G~~~g~i~~~~aHel~H----r~~~lnr~lg~~~~-~~~--~~~~~~~~H~~~HH~~v~t-p~DP~ 137 (314)
T cd03512 66 DLSALEKVGLILSLGLLSGVIGINTAHELIH----RRSRLERWLGKLLL-ASL--LYGHFAIEHVRGHHRYVAT-PEDPA 137 (314)
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHhccC----CCChHHHHHHHHHH-HHh--cccceeeeecccCCCCCCC-CCCcc
Confidence 56677788888888888876654 8899999 57899999999763 333 4555999999 79999998 79999
Q ss_pred CCCCCeeeeeccccccccchhhhhhcchhhHHhHHHhccchhHHHHHHHHHH--HHHHHHHHHHHhcCCCC--chHHHHH
Q 013234 211 LQHMPFFVVSSKFFNSITSCYYERKLHFDSVARFLVSYQHWTFYPVMCLARI--NLFAQSFLLLLSKKNVP--NRVQEIF 286 (447)
Q Consensus 211 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~ 286 (447)
.... .+..+ ++ ++-...+.+ .|.... ...++++.+ ....++.
T Consensus 138 tar~-----ge~~y------------------~f---------~~r~~~g~~~~aw~~e~--~rl~~~g~~~~~~~n~~l 183 (314)
T cd03512 138 TARR-----GESFY------------------RF---------LPRALVGSFRSAWKLEK--KRLRRKGRSPWSPRNEVL 183 (314)
T ss_pred cccc-----CccHH------------------HH---------HHHHHHHHHHHHHHHHH--HHHHhcCCCCCccchHHH
Confidence 7521 11100 00 011111111 111111 112222221 1112222
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhh-heeeeeeccCcccccccCCCCCCcHHHHhHhcccccCCCcchhhh
Q 013234 287 GILVFWIWYPLLISCLPNWGERVMFIVASFSVTG-IQHVQFCLNHFSSNVYVGPPCSNDWFRKQTQGTLNIKCSSWMDWF 365 (447)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~H~~~~~~~~~~~~~~w~~~ql~~s~~~~~~~~~~~l 365 (447)
...+.++.+...+..++++..+ .+++++.+++. .+-..-++||++......+ +..+...+-..|.|.. +.+.+|+
T Consensus 184 ~~~~~~~a~~~~~~~~~g~~~l-~~~l~~~~~g~~~l~~~nY~EHyGL~r~~~~--~gr~e~~~~~hSWNs~-~~~~n~l 259 (314)
T cd03512 184 RYLALAVALLALAAALGGLAGL-LFLLIQAFYAKSLLELVNYIEHYGLLRKKLA--NGRYEPVGPRHSWNSN-HIVSNLL 259 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCccccCC--CCccccCCCccCcCcC-cHHHHHH
Confidence 2222222222222223334333 44444444444 5556667899998754322 1122222233455543 5688999
Q ss_pred hcccccccccccCCCCCCcChhhhhH
Q 013234 366 HGGLQFQVEHHLFPRLPRCNLRKVSP 391 (447)
Q Consensus 366 ~~glnyHieHHLfP~vP~~~lp~~~~ 391 (447)
..|+++|.+||.+|++|++.|+...+
T Consensus 260 ~~nl~rHsdHH~~p~~~y~~L~~~~~ 285 (314)
T cd03512 260 LFNLQRHSDHHAHPTRPYQALRPFPE 285 (314)
T ss_pred HHhcchhhhhccCCCCchhhccCCcc
Confidence 99999999999999999999987654
No 21
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=99.80 E-value=2.5e-20 Score=141.81 Aligned_cols=73 Identities=45% Similarity=0.755 Sum_probs=69.1
Q ss_pred CcCHHHHcccCCCCCeEEEEcCeEEecCCCcccccccccccccccCCchhhHH-HhcCcHHHHhhhhh-cccccc
Q 013234 7 HISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAF-VAYHPGAAWQYLDK-FFTGYY 79 (447)
Q Consensus 7 ~~~~~e~~~~~~~~~~~v~i~g~vydvt~f~~~hPgg~~~l~~~~g~D~t~~f-~~~H~~~~~~~l~~-~~vg~~ 79 (447)
.||++||++||+++++||+|+|+|||||+|++.||||...+..++|+|+|+.| ...|+..+.++|++ |+||..
T Consensus 1 ~~t~~el~~h~~~~~~~v~i~g~VYDvt~~~~~hpgg~~~~~~~aG~D~T~~f~~~~h~~~~~~~l~~~~~vG~l 75 (76)
T PF00173_consen 1 VYTWEELAKHNKKGDCWVIIDGKVYDVTDFLDRHPGGADILKKYAGRDATDAFEEAFHSWWAEKCLEKYYKVGYL 75 (76)
T ss_dssp EEEHHHHTTTEETTEEEEEETTEEEECTTTTTTSTTTSHHHHTTTTSBTHHHHHHHTHHHHHHHHHHGCGEEEEE
T ss_pred CCCHHHHhhhCCCCCEEEEECCEEcccccccccccchhHHHHHhccccccHHHhhccCcHHHHHHccCCCEEEEe
Confidence 37999999999999999999999999999999999999999999999999999 88999889999999 999954
No 22
>KOG0536 consensus Flavohemoprotein b5+b5R [Energy production and conversion]
Probab=99.79 E-value=5.4e-20 Score=146.37 Aligned_cols=75 Identities=41% Similarity=0.708 Sum_probs=70.0
Q ss_pred CCcCHHHHcccCCCCCeEEEEcCeEEecCCCcccccccccccccccCCchhhHHHhcCcHHH-Hhhhhhccccccc
Q 013234 6 KHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVAYHPGAA-WQYLDKFFTGYYL 80 (447)
Q Consensus 6 ~~~~~~e~~~~~~~~~~~v~i~g~vydvt~f~~~hPgg~~~l~~~~g~D~t~~f~~~H~~~~-~~~l~~~~vg~~~ 80 (447)
..+|.+||++||+.+|||++|+|+|||||.|++.||||...|+.++|+|+|.+|+.+|.... .++|+++.||..+
T Consensus 68 i~vt~~El~KH~~~dDcW~~i~G~VYnVt~Yl~fHPgG~d~lmk~aGrD~T~~Fnk~H~WVN~e~LL~~c~VGvl~ 143 (145)
T KOG0536|consen 68 IPVTAEELKKHNKKDDCWIAIRGKVYNVTAYLDFHPGGVDELMKHAGRDATKLFNKYHAWVNYEELLKKCFVGVLV 143 (145)
T ss_pred CccCHHHHHhhCCccceEEEEcCEEEecccccccCCCCHHHHHHhcCcchHHHHHHHHHHhcHHHHHhhceeeeec
Confidence 47899999999999999999999999999999999999999999999999999999999985 5599999999443
No 23
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=99.75 E-value=1.4e-18 Score=145.06 Aligned_cols=59 Identities=36% Similarity=0.597 Sum_probs=53.1
Q ss_pred HHHhhhccccccccccCchhhhHHHHHHhhhhcCcchhhhhhccccccccCCCCCCCCCC
Q 013234 152 QSGWIGHDSGHYQVMSSRGINRIVQVLTGNCLAGISIAWWKRNHNAHHIACNSLDFDPDL 211 (447)
Q Consensus 152 ~~~~l~HD~~H~~~~~~~~~N~~~g~~~~~~~~~~s~~~wr~~H~~HH~~tn~~~~DpD~ 211 (447)
+...++||++|+++++++++|++++.+++. +.+.|+..|+..|+.||+++|.+++|||.
T Consensus 14 ~~~~~~H~~~H~~~~~~~~~n~~~~~~~~~-~~~~~~~~~~~~H~~HH~~~~~~~~D~~~ 72 (122)
T cd01060 14 GLTVLAHELGHRSFFRSRWLNRLLGALLGL-ALGGSYGWWRRSHRRHHRYTNTPGKDPDS 72 (122)
T ss_pred HHHHHHHHHhhhhhhccccHHHHHHHHHHH-HHcCCHHHHHHHHHHHhcCcCCCCCCCcc
Confidence 455699999999999999999999998865 77889999999999999999997789885
No 24
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=99.61 E-value=6.4e-16 Score=129.90 Aligned_cols=76 Identities=34% Similarity=0.591 Sum_probs=70.1
Q ss_pred CCCCcCHHHHcccCCCCCeEEEEcCeEEecCCCcccccccccccccccCCchhhHHHh-cCcHHHHhhhhhcccccc
Q 013234 4 SKKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVA-YHPGAAWQYLDKFFTGYY 79 (447)
Q Consensus 4 ~~~~~~~~e~~~~~~~~~~~v~i~g~vydvt~f~~~hPgg~~~l~~~~g~D~t~~f~~-~H~~~~~~~l~~~~vg~~ 79 (447)
....++.+|+.+|++.++||++|+|+|||||.|+++||||...|+..+|+|+|+.|+- .|+..+.++|++++|+..
T Consensus 48 ~~~~~~~eev~~h~~~~d~~ivi~g~VyDvs~fl~~HPGGe~ii~~~~g~Dat~~f~~~~~~~~~~~llk~~yv~~v 124 (164)
T COG5274 48 SPKPITAEEVAKHNKSEDCWIVINGKVYDVSQFLDEHPGGEDIIKDTAGKDATKAFNFLHHSHQIGNLLKDVYVDQV 124 (164)
T ss_pred ccccccHHHHHHhcCccceEEEEcCEEEEhhhccccCCCcceeehhccCchhhhhhcccccchhHHhhhhceeeecc
Confidence 4578999999999999999999999999999999999999999999999999999996 567678889999999954
No 25
>PLN02252 nitrate reductase [NADPH]
Probab=99.60 E-value=4.6e-16 Score=167.78 Aligned_cols=79 Identities=33% Similarity=0.591 Sum_probs=74.5
Q ss_pred CCCCcCHHHHcccCCCCCeEEEEcCeEEecCCCcccccccccccccccCCchhhHHHhcCcHHHHhhhhhccccccccc
Q 013234 4 SKKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVAYHPGAAWQYLDKFFTGYYLED 82 (447)
Q Consensus 4 ~~~~~~~~e~~~~~~~~~~~v~i~g~vydvt~f~~~hPgg~~~l~~~~g~D~t~~f~~~H~~~~~~~l~~~~vg~~~~~ 82 (447)
..+.||++|+++|+++++|||+|+|+|||+|+|++.||||.+.|..++|+|+|+.|+++|+..|+++|++|+||.+.++
T Consensus 516 ~~~~~t~~ev~~h~~~~~~Wivi~g~VYDvT~fl~~HPGG~~~I~~~aG~DaT~~F~~~Hs~~a~~~L~~~~IG~l~~~ 594 (888)
T PLN02252 516 GSKQYTMSEVRKHNSEDSCWIVVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFDAIHSDKAKKMLEDYRIGELVTT 594 (888)
T ss_pred ccceeCHHHHHhhCcCCCeEEEECCEEEeCHHHHHHCCChHHHHHhhcCCCcHHHHhhhhhHHHHHHHHhCcCCccccc
Confidence 3589999999999999999999999999999999999999999999999999999999999999999999999976543
No 26
>KOG4576 consensus Sulfite oxidase, heme-binding component [Energy production and conversion]
Probab=99.31 E-value=1.3e-12 Score=104.25 Aligned_cols=77 Identities=30% Similarity=0.518 Sum_probs=63.7
Q ss_pred CCCCcCHHHHcccCCCC-CeEEEEcCeEEecCCCcccccccccccccccCC--chhhHHHhcCcHH-HHhhhhhcccccc
Q 013234 4 SKKHISQQDLKGHNKPG-DLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQ--DVTDAFVAYHPGA-AWQYLDKFFTGYY 79 (447)
Q Consensus 4 ~~~~~~~~e~~~~~~~~-~~~v~i~g~vydvt~f~~~hPgg~~~l~~~~g~--D~t~~f~~~H~~~-~~~~l~~~~vg~~ 79 (447)
...+|+.+||++|++++ ..||.+...|||||+|++.||||.+ |+..+|. |.-....+.|... +.++|+.|+||++
T Consensus 78 ~l~iY~~EEV~~H~s~e~rIWVTyg~gVyDVTdFv~~HPGGdK-illAAG~a~dPFWalY~qHnt~eVlElLegyrIG~L 156 (167)
T KOG4576|consen 78 SLHIYTKEEVSSHTSPETRIWVTYGSGVYDVTDFVDLHPGGDK-ILLAAGGALDPFWALYAQHNTSEVLELLEGYRIGEL 156 (167)
T ss_pred hccchhHHHHHhcCCCccceEEEecCcceeHHHHHHhCCCcce-eeeecCCCcCcHHHHHHHhhHHHHHHHHhhcccccC
Confidence 46899999999999876 6999999999999999999999976 5556665 4444555778766 8899999999965
Q ss_pred cc
Q 013234 80 LE 81 (447)
Q Consensus 80 ~~ 81 (447)
.+
T Consensus 157 ~~ 158 (167)
T KOG4576|consen 157 NP 158 (167)
T ss_pred Ch
Confidence 44
No 27
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=98.80 E-value=8e-09 Score=72.83 Aligned_cols=72 Identities=24% Similarity=0.372 Sum_probs=52.5
Q ss_pred CCCcCHHHHcccCCCC-CeEEEEcCeEEecCCCcccccccccccccccCCchhhHHHhcCcHHHHhhhhhc-cccc
Q 013234 5 KKHISQQDLKGHNKPG-DLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVAYHPGAAWQYLDKF-FTGY 78 (447)
Q Consensus 5 ~~~~~~~e~~~~~~~~-~~~v~i~g~vydvt~f~~~hPgg~~~l~~~~g~D~t~~f~~~H~~~~~~~l~~~-~vg~ 78 (447)
.|+||.+||.+.|++. ..+|.++|+||||+.=- .--+|...-...+|+|+|+.|++.|+..+ ++|+.| .||-
T Consensus 1 mrefTLEELs~ynG~nGpaYiA~~G~VYDvS~s~-~W~dGtHqglhsaG~DLs~~~~~~aphg~-eil~~~PvVG~ 74 (81)
T COG4892 1 MREFTLEELSKYNGENGPAYIAVNGTVYDVSLSP-SWGDGTHQGLHSAGKDLSSEFNSCAPHGM-EILTSLPVVGA 74 (81)
T ss_pred CceecHHHHHhhcCCCCCeEEEECCEEEeeccCc-ccCCCccccccccchhHHHHHhhcCCchh-HHHhcCchhhe
Confidence 3789999999999766 69999999999998421 23455555556799999999997654332 345555 4553
No 28
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=98.78 E-value=4.3e-08 Score=91.11 Aligned_cols=54 Identities=20% Similarity=0.293 Sum_probs=40.6
Q ss_pred ccccccccCchhhhHHHHHHhhhhcCcchhhhhhccccccccCCCCCCCCCCCCCC
Q 013234 160 SGHYQVMSSRGINRIVQVLTGNCLAGISIAWWKRNHNAHHIACNSLDFDPDLQHMP 215 (447)
Q Consensus 160 ~~H~~~~~~~~~N~~~g~~~~~~~~~~s~~~wr~~H~~HH~~tn~~~~DpD~~~~p 215 (447)
-+|+|+.-++++.-++...-...+.|-++ +|-..|..||+||.+ |+||--....
T Consensus 91 wsHRSyKa~kpLr~fla~~~~~A~Qg~~~-~WvrdHR~HHk~tdT-D~DPhn~~rG 144 (321)
T KOG1600|consen 91 WSHRSYKAPKPLRYFLAYCNTLAFQGDII-DWVRDHRVHHKFTDT-DADPHNPRRG 144 (321)
T ss_pred cccccccCCccHHHHHHHHHHHhccCChh-HHHhhhhhhcccccc-CCCCCCcccc
Confidence 57888888888888877744334466555 599999999999999 8888765433
No 29
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=98.75 E-value=3.5e-08 Score=89.65 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=39.4
Q ss_pred ccc-cccccccCchhhhHHHHHHhhhhcCcchhhhhhccccccccCCCCCCCC
Q 013234 158 HDS-GHYQVMSSRGINRIVQVLTGNCLAGISIAWWKRNHNAHHIACNSLDFDP 209 (447)
Q Consensus 158 HD~-~H~~~~~~~~~N~~~g~~~~~~~~~~s~~~wr~~H~~HH~~tn~~~~Dp 209 (447)
|-| +|+|+.-.+++..++.... .+....+..+|-..|..||++|.+ +.||
T Consensus 67 HRl~sHRa~~~~k~Le~~la~~g-~l~~~G~~~~W~~~HR~HHr~tDT-d~DP 117 (289)
T COG1398 67 HRLWSHRAFKAHKWLEYVLAFWG-ALTTQGPAIEWVGIHRKHHRKTDT-DQDP 117 (289)
T ss_pred hhhhhhhhcccchHHHHHHHHHH-HhhcCCCceeHHHHHHHhhcccCC-CCCC
Confidence 544 7899988899988887644 455555777899999999999966 7777
No 30
>PLN02220 delta-9 acyl-lipid desaturase
Probab=98.56 E-value=2.9e-06 Score=80.62 Aligned_cols=51 Identities=22% Similarity=0.203 Sum_probs=38.9
Q ss_pred ccccccccCchhhhHHHHHHhhhhcCcchhhhhhccccccccCCCCCCCCCCC
Q 013234 160 SGHYQVMSSRGINRIVQVLTGNCLAGISIAWWKRNHNAHHIACNSLDFDPDLQ 212 (447)
Q Consensus 160 ~~H~~~~~~~~~N~~~g~~~~~~~~~~s~~~wr~~H~~HH~~tn~~~~DpD~~ 212 (447)
.+|+++.-++++..++..+......| |..+|...|..||+++.+ ++||--.
T Consensus 80 ~sHrsfka~~~l~~~la~~g~~a~Qg-s~~~Wv~~HR~HH~~sDt-~~DPHsp 130 (299)
T PLN02220 80 LAHRSFKLPKWLEYPFAYSALFALQG-DPIDWVSTHRFHHQFTDS-DRDPHSP 130 (299)
T ss_pred HHhhcCcCcHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcCC-CCCcccc
Confidence 47888888899988877754433455 566799999999999988 6676554
No 31
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=97.82 E-value=2.6e-05 Score=66.80 Aligned_cols=56 Identities=23% Similarity=0.475 Sum_probs=45.4
Q ss_pred CCCCCcCHHHHcccCCCC---CeEEEEcCeEEecCCCcc-cccccccccccccCCchhhHHH
Q 013234 3 DSKKHISQQDLKGHNKPG---DLWISVQGKVYNVTDWTK-HHPGGDLPLLSLAGQDVTDAFV 60 (447)
Q Consensus 3 ~~~~~~~~~e~~~~~~~~---~~~v~i~g~vydvt~f~~-~hPgg~~~l~~~~g~D~t~~f~ 60 (447)
|..+.||.+||++.++.+ ..++.|+|+|||||.=.. +-|||.- ..+||+|+|....
T Consensus 53 P~~~dfT~eEL~~ydGs~~d~~Il~AI~G~VYDVT~Gr~FYGp~GpY--~~fAG~DASR~La 112 (183)
T KOG1110|consen 53 PKVRDFTVEELRQYDGSDPDKPILLAINGKVYDVTRGREFYGPGGPY--SLFAGKDASRGLA 112 (183)
T ss_pred CcccccCHHHHHhcCCCCCCCceEEEecceEEEecCCccccCCCCCc--hhhcccchHHHHH
Confidence 345789999999998655 589999999999984332 6899985 5599999998755
No 32
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=97.58 E-value=0.00053 Score=60.23 Aligned_cols=50 Identities=22% Similarity=0.391 Sum_probs=39.0
Q ss_pred ccccccccCchhhhHHHHHHhhhhcCcchhhhhhccccccccCCCCCCCCCC
Q 013234 160 SGHYQVMSSRGINRIVQVLTGNCLAGISIAWWKRNHNAHHIACNSLDFDPDL 211 (447)
Q Consensus 160 ~~H~~~~~~~~~N~~~g~~~~~~~~~~s~~~wr~~H~~HH~~tn~~~~DpD~ 211 (447)
.+|+++..++++..++..+. .+...-|..+|...|..||+++.+ +.||--
T Consensus 27 ~aHrsfk~~~~l~~~l~~~g-~~a~qgs~~~W~~~HR~HH~~sDt-~~DPhs 76 (178)
T cd03505 27 WAHRSFKAPKPLRIFLAILG-SLAGQGSPLWWVADHRLHHRYSDT-DGDPHS 76 (178)
T ss_pred HhhccCcCcHHHHHHHHHHH-HHHcCcCHHHHHHHHHHhhcccCC-CCCCCC
Confidence 47899999999999888755 444444677899999999999987 567654
No 33
>KOG1108 consensus Predicted heme/steroid binding protein [General function prediction only]
Probab=96.55 E-value=0.0022 Score=56.95 Aligned_cols=54 Identities=26% Similarity=0.503 Sum_probs=43.9
Q ss_pred CCCcCHHHHcccCCCC---CeEEEEcCeEEecCCCcccc--cccccccccccCCchhhHHHh
Q 013234 5 KKHISQQDLKGHNKPG---DLWISVQGKVYNVTDWTKHH--PGGDLPLLSLAGQDVTDAFVA 61 (447)
Q Consensus 5 ~~~~~~~e~~~~~~~~---~~~v~i~g~vydvt~f~~~h--Pgg~~~l~~~~g~D~t~~f~~ 61 (447)
+..||++||++.|+.+ +.++.|=|.||||+.=. +| ||+. -..++|||+|.+|-+
T Consensus 59 k~lFtpeeLa~fnGt~e~~piyLaiLGsVfdVs~gk-~hYgsG~s--YnhFaGRDASrAFvs 117 (281)
T KOG1108|consen 59 KILFTPEELAKFNGTEEGRPIYLAILGSVFDVSRGK-KHYGSGCS--YNHFAGRDASRAFVS 117 (281)
T ss_pred ceeeCHHHHhhccCCCCCCceeeeeeceeeeccCCe-eeeCCCCC--cccccccccchheec
Confidence 4589999999999755 57999999999998643 44 5655 578999999999874
No 34
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=83.42 E-value=0.63 Score=35.98 Aligned_cols=15 Identities=40% Similarity=1.070 Sum_probs=12.4
Q ss_pred EEEcCeEEecCCCcc
Q 013234 24 ISVQGKVYNVTDWTK 38 (447)
Q Consensus 24 v~i~g~vydvt~f~~ 38 (447)
+..+|+|||||+|+.
T Consensus 59 ~c~~g~VyDiTeWA~ 73 (94)
T PF14901_consen 59 ACMDGKVYDITEWAT 73 (94)
T ss_pred EEcCceEEehhhhhh
Confidence 346999999999973
No 35
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=70.91 E-value=19 Score=32.81 Aligned_cols=60 Identities=17% Similarity=0.108 Sum_probs=31.9
Q ss_pred hhHHHHHHHHhhcccCccCchhHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 013234 90 KDYRKLVAEFSKMGLFEKKGHCALYTFVFMAMLFAVSIYGVFCSDSTWVHLCSGGLMGLLWI 151 (447)
Q Consensus 90 ~~y~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~ 151 (447)
+.+.++++-.+- --+.+++..++.++..++..++++.+.+...+||.+++.++++|+...
T Consensus 8 ~~~~Qi~q~y~~--trk~dp~l~~~ml~a~l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l~a 67 (224)
T PF13829_consen 8 GRRKQIWQAYKM--TRKEDPKLPWLMLGAFLGPIAVFVLIGLLFGSWWYWLIIGILLGLLAA 67 (224)
T ss_pred hHHHHHHHHHHH--HHHHCcchHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 445566665442 112344444444444444444444433344477778888888887654
No 36
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=59.50 E-value=78 Score=30.29 Aligned_cols=60 Identities=13% Similarity=0.004 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHHH-HhhhccccccccccCch--hhhHHHHHHhhhhcCcchhhhhhccccccccCCC
Q 013234 135 STWVHLCSGGLMGLLWIQS-GWIGHDSGHYQVMSSRG--INRIVQVLTGNCLAGISIAWWKRNHNAHHIACNS 204 (447)
Q Consensus 135 ~~~~~~l~~~l~g~~~~~~-~~l~HD~~H~~~~~~~~--~N~~~g~~~~~~~~~~s~~~wr~~H~~HH~~tn~ 204 (447)
++|.+++....+|.....+ ....|......-.++.. .+.++.. +.. ....|..||.++..
T Consensus 179 ~~~~~~l~~~~la~~~~~~~~~~Eh~~~~~~~~rs~~~~~~~~~~~-----l~~-----ninyH~~HH~~P~v 241 (288)
T cd03509 179 PWWAYLLAVYYPALSLAKIRTFLEHRAHERPRGRTVINEAGGPLRL-----LFL-----NNNLHVVHHDLPTL 241 (288)
T ss_pred HHHHHHHHHHHHHHHHHhhchHhhccCCCCccCCceeeeCcHHHHH-----HHh-----cCCchHhhcCCCCC
Confidence 3444444444455554443 33668876554443332 1232222 111 23479999998776
No 37
>PF13239 2TM: 2TM domain
Probab=54.60 E-value=79 Score=23.78 Aligned_cols=24 Identities=17% Similarity=-0.067 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcc
Q 013234 136 TWVHLCSGGLMGLLWIQSGWIGHD 159 (447)
Q Consensus 136 ~~~~~l~~~l~g~~~~~~~~l~HD 159 (447)
|..+++.+..+|+..+.....+.+
T Consensus 42 W~~~~~~~Wgi~L~~h~~~vf~~~ 65 (83)
T PF13239_consen 42 WPLWPILGWGIGLAIHALKVFGSK 65 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccc
Confidence 444455555556655554444444
No 38
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=53.95 E-value=61 Score=31.44 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=9.3
Q ss_pred ccccccccCCC
Q 013234 194 NHNAHHIACNS 204 (447)
Q Consensus 194 ~H~~HH~~tn~ 204 (447)
.|..||.++..
T Consensus 265 rHsdHH~~p~~ 275 (314)
T cd03512 265 RHSDHHAHPTR 275 (314)
T ss_pred hhhhhccCCCC
Confidence 68899998776
No 39
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=53.38 E-value=5.6 Score=39.81 Aligned_cols=16 Identities=38% Similarity=1.086 Sum_probs=13.5
Q ss_pred eEEEEcCeEEecCCCc
Q 013234 22 LWISVQGKVYNVTDWT 37 (447)
Q Consensus 22 ~~v~i~g~vydvt~f~ 37 (447)
.++.-||+|||+|+|+
T Consensus 379 yy~c~DgkVYDITeWA 394 (490)
T KOG0720|consen 379 YYACMDGKVYDITEWA 394 (490)
T ss_pred eeeecCCceEeehhhh
Confidence 4556799999999997
No 40
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=48.25 E-value=67 Score=28.33 Aligned_cols=37 Identities=27% Similarity=0.299 Sum_probs=20.2
Q ss_pred hhccccccccccCchhhhHHHHHHhhhhcCcchhhhhhcccccccc
Q 013234 156 IGHDSGHYQVMSSRGINRIVQVLTGNCLAGISIAWWKRNHNAHHIA 201 (447)
Q Consensus 156 l~HD~~H~~~~~~~~~N~~~g~~~~~~~~~~s~~~wr~~H~~HH~~ 201 (447)
-.|--+|...+ .+.+=+++.. . .++ .| |..|..||+-
T Consensus 100 q~HkWsH~~~~-~P~~V~~LQ~-~-gil--ls----r~~H~~HH~a 136 (178)
T PF10520_consen 100 QFHKWSHTYKS-LPPWVRFLQD-A-GIL--LS----RKHHRIHHVA 136 (178)
T ss_pred HHHHHHcCCCC-CCHHHHHHHH-C-Ccc--cC----chhhhccccC
Confidence 44888887544 3333333333 2 222 23 5688899984
No 41
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=44.45 E-value=42 Score=30.39 Aligned_cols=12 Identities=25% Similarity=0.304 Sum_probs=9.5
Q ss_pred hccccccccCCC
Q 013234 193 RNHNAHHIACNS 204 (447)
Q Consensus 193 ~~H~~HH~~tn~ 204 (447)
..|+.||.++..
T Consensus 219 ~~H~~HHl~P~v 230 (257)
T PF00487_consen 219 NYHIEHHLFPGV 230 (257)
T ss_pred CChHHhCCCCCc
Confidence 378999998765
No 42
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=40.24 E-value=40 Score=31.69 Aligned_cols=12 Identities=50% Similarity=0.465 Sum_probs=10.6
Q ss_pred hccccccccCCC
Q 013234 193 RNHNAHHIACNS 204 (447)
Q Consensus 193 ~~H~~HH~~tn~ 204 (447)
--||-||.|+|+
T Consensus 237 gwHNnHHafp~~ 248 (289)
T COG1398 237 GWHNNHHAFPNS 248 (289)
T ss_pred ccccccccCcch
Confidence 369999999997
No 43
>PLN02434 fatty acid hydroxylase
Probab=38.98 E-value=1.3e+02 Score=27.94 Aligned_cols=11 Identities=27% Similarity=0.250 Sum_probs=8.2
Q ss_pred ccccccccCCC
Q 013234 194 NHNAHHIACNS 204 (447)
Q Consensus 194 ~H~~HH~~tn~ 204 (447)
.|-.||.++++
T Consensus 122 lHg~HH~~P~D 132 (237)
T PLN02434 122 LHGCHHKHPMD 132 (237)
T ss_pred HHHHhhcCCCC
Confidence 47799987664
No 44
>PLN02220 delta-9 acyl-lipid desaturase
Probab=37.18 E-value=1.7e+02 Score=28.15 Aligned_cols=11 Identities=45% Similarity=0.453 Sum_probs=9.6
Q ss_pred ccccccccCCC
Q 013234 194 NHNAHHIACNS 204 (447)
Q Consensus 194 ~H~~HH~~tn~ 204 (447)
-||-||.++.+
T Consensus 245 wHNnHHafP~s 255 (299)
T PLN02220 245 WHNNHHAFESS 255 (299)
T ss_pred ccccccCCccc
Confidence 59999999875
No 45
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=34.40 E-value=30 Score=32.50 Aligned_cols=51 Identities=18% Similarity=0.166 Sum_probs=30.7
Q ss_pred cccCCC-CCCcChhhhhHHHHHHHHHcCCCcccccHHH-------------HHHHHHHHHHHHHh
Q 013234 375 HHLFPR-LPRCNLRKVSPFVVELCKKHNLPYNIVSFWK-------------SNAMTVETLQAAAL 425 (447)
Q Consensus 375 HHLfP~-vP~~~lp~~~~~v~~~~~~~g~~y~~~~~~~-------------~~~~~~~~L~~~~~ 425 (447)
|=-||+ |..-.+.+-..++++.|++.|++|.+.+-.+ .+-.+-+.+++.|+
T Consensus 136 h~sfprhms~~~l~~Rr~~M~~~C~~lGi~fv~~taPDP~sd~gv~gaqqfIlE~vp~~i~kYGk 200 (275)
T PF12683_consen 136 HYSFPRHMSYELLARRRDIMEEACKDLGIKFVEVTAPDPTSDVGVAGAQQFILEDVPKWIKKYGK 200 (275)
T ss_dssp EEEETTGGGSHHHHHHHHHHHHHHHHCT--EEEEEE---SSTCHHHHHHHHHHHHHHHHHHHH-S
T ss_pred EEechhhcchHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 333776 4444556667899999999999998863222 24455666666665
No 46
>PLN02601 beta-carotene hydroxylase
Probab=32.22 E-value=96 Score=29.10 Aligned_cols=58 Identities=24% Similarity=0.232 Sum_probs=29.0
Q ss_pred cccCccCchhHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHH-hhhcccc-cc
Q 013234 102 MGLFEKKGHCALYTFVFMAMLFAVSIYGVFCSDSTWVHLCSGGLMGLLWIQSG-WIGHDSG-HY 163 (447)
Q Consensus 102 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~~~-~l~HD~~-H~ 163 (447)
.|-|++|+.+.++-.+..+++++.+. .. ..+++.++.++-+|+...++. ++.||.. |+
T Consensus 175 ~g~FE~NDlFaVifAvpAIaL~~~G~---~~-~g~~p~~~fgiGlGITlYGiaYffVHDgLVHq 234 (303)
T PLN02601 175 EGAFELNDVFAIVNAVPAIGLLYYGF---FN-KGLVPGLCFGAGLGITVFGMAYMFVHDGLVHK 234 (303)
T ss_pred CCCcccccchhhhhHHHHHHHHHHhh---cc-ccccHHHHHHHHHhHHHHHHHHHHHhhhhhcc
Confidence 56678887766654444443333332 11 222222333444565544433 5889964 54
No 47
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=32.01 E-value=82 Score=31.00 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=9.7
Q ss_pred hccccccccCCC
Q 013234 193 RNHNAHHIACNS 204 (447)
Q Consensus 193 ~~H~~HH~~tn~ 204 (447)
..|..||-+++.
T Consensus 269 nyH~~HHl~P~v 280 (343)
T COG3239 269 NYHVEHHLFPDV 280 (343)
T ss_pred cccHhhhCCCCC
Confidence 457799999887
No 48
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=29.74 E-value=2.5e+02 Score=24.68 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=10.7
Q ss_pred HhhcCchhHHHHHHHHHHHHHHH
Q 013234 129 GVFCSDSTWVHLCSGGLMGLLWI 151 (447)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~g~~~~ 151 (447)
..+.+.+|+- ++.+++.|....
T Consensus 118 a~lfgg~~~~-~~~a~i~g~~~~ 139 (193)
T PF06738_consen 118 ALLFGGSWID-MIVAFILGLLVG 139 (193)
T ss_pred HHHHCCCHHH-HHHHHHHHHHHH
Confidence 3335555554 444555555443
No 49
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=29.63 E-value=2.8e+02 Score=25.44 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=9.8
Q ss_pred ccccccccCCC
Q 013234 194 NHNAHHIACNS 204 (447)
Q Consensus 194 ~H~~HH~~tn~ 204 (447)
.|+.||.++..
T Consensus 206 yH~eHH~fP~~ 216 (225)
T cd03513 206 YHHEHHLSPST 216 (225)
T ss_pred cchhhccCCCC
Confidence 79999999887
No 50
>TIGR00037 eIF_5A translation initiation factor eIF-5A. Observed in eukaryotes and archaea.
Probab=27.91 E-value=51 Score=27.43 Aligned_cols=31 Identities=16% Similarity=0.455 Sum_probs=24.4
Q ss_pred CcCHHHHcccCCCCCeEEEEcCeEEecCCCcccccc
Q 013234 7 HISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPG 42 (447)
Q Consensus 7 ~~~~~e~~~~~~~~~~~v~i~g~vydvt~f~~~hPg 42 (447)
.++..||++ +..+.++|+.|-|.++....||
T Consensus 6 ~~~~~~irk-----G~~i~~~g~p~~V~e~~~~kpG 36 (130)
T TIGR00037 6 QVQVSALRV-----GGYVVIDGRPCKIVDISTSKPG 36 (130)
T ss_pred eccHHHccC-----CCEEEECCEEEEEEEEEecCCC
Confidence 356666665 6788999999999998656688
No 51
>PLN02598 omega-6 fatty acid desaturase
Probab=27.62 E-value=2.3e+02 Score=28.84 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=15.2
Q ss_pred HHHhhhccccccccccCchhhhHHHH
Q 013234 152 QSGWIGHDSGHYQVMSSRGINRIVQV 177 (447)
Q Consensus 152 ~~~~l~HD~~H~~~~~~~~~N~~~g~ 177 (447)
....++|-.-+-....+.-||..-|-
T Consensus 293 ~it~lhHt~p~ip~~~~~eW~~~~~a 318 (421)
T PLN02598 293 TFTMVHHTAPHIPFKQAREWNAAQAQ 318 (421)
T ss_pred HHHHHhhcCCCCCccccccccHhhhh
Confidence 33447776665555556666665554
No 52
>PF15451 DUF4632: Domain of unknown function (DUF4632)
Probab=26.70 E-value=75 Score=22.27 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=16.8
Q ss_pred HHHHhhhhhcCCCCCccchh
Q 013234 421 QAAALQARDLSRPVPRNLVW 440 (447)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~ 440 (447)
.++-.++|++.+|.|+|-+|
T Consensus 40 drvl~parrwrrplpsnvly 59 (71)
T PF15451_consen 40 DRVLAPARRWRRPLPSNVLY 59 (71)
T ss_pred HHHHhHHHHhccCCCcccee
Confidence 46677899999999999875
No 53
>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors. ; PDB: 3TRE_A 1YBY_A 1IZ6_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H 3OYY_B.
Probab=25.38 E-value=39 Score=23.60 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=19.8
Q ss_pred CeEEEEcCeEEecCCCccccccccc
Q 013234 21 DLWISVQGKVYNVTDWTKHHPGGDL 45 (447)
Q Consensus 21 ~~~v~i~g~vydvt~f~~~hPgg~~ 45 (447)
+..|.++|..|-|.++....||...
T Consensus 8 G~~i~~~g~~~~V~~~~~~k~gkg~ 32 (58)
T PF08207_consen 8 GMVIEIDGEPYVVLDFQHVKPGKGG 32 (58)
T ss_dssp TSEEEETTEEEEEEEEEEECCTTSS
T ss_pred CCEEEECCEEEEEEEEEEECCCCCC
Confidence 6778899999999999666676543
No 54
>PHA01623 hypothetical protein
Probab=25.18 E-value=1.1e+02 Score=21.28 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHcCCCcccccHHHHHHHHH
Q 013234 388 KVSPFVVELCKKHNLPYNIVSFWKSNAMTV 417 (447)
Q Consensus 388 ~~~~~v~~~~~~~g~~y~~~~~~~~~~~~~ 417 (447)
++...+..+|+++|+. ...-..+|+...+
T Consensus 23 el~~~Ld~y~~~~g~~-rSe~IreAI~~yL 51 (56)
T PHA01623 23 DLKTRLKVYCAKNNLQ-LTQAIEEAIKEYL 51 (56)
T ss_pred HHHHHHHHHHHHcCCC-HHHHHHHHHHHHH
Confidence 5688999999999997 5445555555444
No 55
>smart00099 btg1 tob/btg1 family. The tob/btg1 is a family of proteins that inhibit cell proliferation.
Probab=24.13 E-value=57 Score=26.13 Aligned_cols=41 Identities=27% Similarity=0.480 Sum_probs=33.0
Q ss_pred hhcccccccccccCCCCCCc---------ChhhhhHHHHHHHHHcCCCccc
Q 013234 365 FHGGLQFQVEHHLFPRLPRC---------NLRKVSPFVVELCKKHNLPYNI 406 (447)
Q Consensus 365 l~~glnyHieHHLfP~vP~~---------~lp~~~~~v~~~~~~~g~~y~~ 406 (447)
|...|.-|..||-||.-|.. | .+..|++.+.|.+-|+.|.+
T Consensus 34 L~~~L~~~y~~HWyP~~P~kGqayRCIrIn-~~~Dp~l~~Aa~~sGl~~~~ 83 (108)
T smart00099 34 LTRLLKEKYKNHWYPEKPYKGSGFRCIRIN-QKVDPVIEQACKESGLDIDD 83 (108)
T ss_pred HHHHHHHHHhcCCCCCCCCCCcceEEEEEC-CcCCHHHHHHHHHhCCCHHH
Confidence 44445678889999998875 3 67789999999999998764
No 56
>TIGR02269 Myxococcus xanthus paralogous lipoprotein family TIGR02269. This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N-terminus; the others are predicted lipoproteins. The function is unknown.
Probab=23.04 E-value=60 Score=28.65 Aligned_cols=39 Identities=21% Similarity=0.363 Sum_probs=23.5
Q ss_pred cccccCCCCCCcChhhhhHHHHHHHHHcCCCcccccHHHHHHHHHHHHH
Q 013234 373 VEHHLFPRLPRCNLRKVSPFVVELCKKHNLPYNIVSFWKSNAMTVETLQ 421 (447)
Q Consensus 373 ieHHLfP~vP~~~lp~~~~~v~~~~~~~g~~y~~~~~~~~~~~~~~~L~ 421 (447)
+.||+||+-| -+....+..||..+..++. .=+.+.+.+.
T Consensus 125 ~kHHiFPQa~---------~LA~wF~~~Gv~iHd~Tl~-Ip~~vHrriH 163 (211)
T TIGR02269 125 VRHHLFPQAP---------ELAKWFARRGVKIHDFTLV-IPRHTHRRIH 163 (211)
T ss_pred eeeccCCCCH---------HHHHHHHHcCCChhheeee-ccHHHHHHhh
Confidence 7899999864 3444555678887766421 2234444443
No 57
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=22.85 E-value=1.9e+02 Score=21.41 Aligned_cols=59 Identities=15% Similarity=0.089 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHcCCCcccccHHHHHHHHH-HHHHHHHhhhhhcC----CCCCc-cchhhhccccC
Q 013234 389 VSPFVVELCKKHNLPYNIVSFWKSNAMTV-ETLQAAALQARDLS----RPVPR-NLVWEAVNTHG 447 (447)
Q Consensus 389 ~~~~v~~~~~~~g~~y~~~~~~~~~~~~~-~~L~~~~~~~~~~~----~~~~~-~~~~~~~~~~~ 447 (447)
++..|...|++.|..-.+.+-.+.+.+++ +.+.++++.++..+ +..|+ .||-.++.+.|
T Consensus 8 l~~~Vaqil~~~Gf~~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~~g 72 (77)
T smart00576 8 LRIAVAQILESAGFDSFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALENLG 72 (77)
T ss_pred HHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 46778899999999888776667766655 33345555444332 33222 33555555443
No 58
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=22.10 E-value=1.7e+02 Score=17.98 Aligned_cols=17 Identities=18% Similarity=-0.029 Sum_probs=12.8
Q ss_pred HHHHHHHHHcCCCcccc
Q 013234 391 PFVVELCKKHNLPYNIV 407 (447)
Q Consensus 391 ~~v~~~~~~~g~~y~~~ 407 (447)
+-+++.|+++|++-.-.
T Consensus 7 ~eLk~~l~~~gL~~~G~ 23 (35)
T PF02037_consen 7 AELKEELKERGLSTSGK 23 (35)
T ss_dssp HHHHHHHHHTTS-STSS
T ss_pred HHHHHHHHHCCCCCCCC
Confidence 56899999999986644
No 59
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=21.89 E-value=56 Score=27.17 Aligned_cols=14 Identities=36% Similarity=0.584 Sum_probs=11.7
Q ss_pred CeEEEEcCeEEecC
Q 013234 21 DLWISVQGKVYNVT 34 (447)
Q Consensus 21 ~~~v~i~g~vydvt 34 (447)
..-|.|||++|||+
T Consensus 4 ~~~itvng~~y~V~ 17 (130)
T PRK06549 4 KFKITIDGKEYLVE 17 (130)
T ss_pred eEEEEECCEEEEEE
Confidence 35678999999996
No 60
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=21.86 E-value=4.8 Score=32.88 Aligned_cols=25 Identities=16% Similarity=0.412 Sum_probs=19.4
Q ss_pred EecCCCcccccccccccccccCCch
Q 013234 31 YNVTDWTKHHPGGDLPLLSLAGQDV 55 (447)
Q Consensus 31 ydvt~f~~~hPgg~~~l~~~~g~D~ 55 (447)
+|+..|++.||.|..++....+|+.
T Consensus 66 ~Dig~~vr~~p~gr~ii~~lg~K~~ 90 (119)
T PF11698_consen 66 HDIGEFVRHYPNGRNIIEKLGAKER 90 (119)
T ss_dssp HHHHHHHHH-GGGHHHHHHHSHHHH
T ss_pred cchHHHHHHChhHHHHHHhcChHHH
Confidence 7999999999999988876665543
No 61
>PF12105 SpoU_methylas_C: SpoU, rRNA methylase, C-terminal; InterPro: IPR022724 This domain is found in bacteria and is about 60 amino acids in length. It is found in association with PF00588 from PFAM. This domain has a conserved LFE sequence motif. Some members of the Pfam family SpoU_methylase, PF00588 from PFAM, carry this very distinctive sequence at their extreme C terminus. The exact function of this domain is not known. ; GO: 0009020 tRNA (guanosine-2'-O-)-methyltransferase activity; PDB: 1ZJR_A.
Probab=21.24 E-value=43 Score=23.44 Aligned_cols=18 Identities=28% Similarity=0.717 Sum_probs=4.0
Q ss_pred hhHHHHHHHHHcCCCccc
Q 013234 389 VSPFVVELCKKHNLPYNI 406 (447)
Q Consensus 389 ~~~~v~~~~~~~g~~y~~ 406 (447)
.+|.+.+.|++.|++|=.
T Consensus 27 ~yP~lA~~cr~kg~pYP~ 44 (57)
T PF12105_consen 27 GYPVLAKWCRRKGLPYPP 44 (57)
T ss_dssp HHHHH-------------
T ss_pred cCHHHHhhcccccccccc
Confidence 479999999999999864
No 62
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=20.29 E-value=1.2e+02 Score=21.81 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=21.6
Q ss_pred HHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHhhhhhcCCC
Q 013234 391 PFVVELCKKHNLPYNIVSFWKSNAMTVETLQAAALQARDLSRP 433 (447)
Q Consensus 391 ~~v~~~~~~~g~~y~~~~~~~~~~~~~~~L~~~~~~~~~~~~~ 433 (447)
|-++|+|+..|+.- ......+++.|.+.|...+...+|
T Consensus 26 Pt~rEIa~~~g~~S-----~~tv~~~L~~Le~kG~I~r~~~~~ 63 (65)
T PF01726_consen 26 PTVREIAEALGLKS-----TSTVQRHLKALERKGYIRRDPGKA 63 (65)
T ss_dssp --HHHHHHHHTSSS-----HHHHHHHHHHHHHTTSEEEGCCSC
T ss_pred CCHHHHHHHhCCCC-----hHHHHHHHHHHHHCcCccCCCCCC
Confidence 45566666665531 245667777777777766554443
No 63
>PF13592 HTH_33: Winged helix-turn helix
Probab=20.23 E-value=1.1e+02 Score=21.46 Aligned_cols=46 Identities=11% Similarity=0.265 Sum_probs=26.8
Q ss_pred CcChhhhhHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHhhhhhcCCCCCccc
Q 013234 383 RCNLRKVSPFVVELCKKHNLPYNIVSFWKSNAMTVETLQAAALQARDLSRPVPRNL 438 (447)
Q Consensus 383 ~~~lp~~~~~v~~~~~~~g~~y~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 438 (447)
...++.++..|. +++|+.|...+ +.+-|+++|-.-++...-++|.+
T Consensus 4 ~wt~~~i~~~I~---~~fgv~ys~~~-------v~~lL~r~G~s~~kp~~~~~k~d 49 (60)
T PF13592_consen 4 RWTLKEIAAYIE---EEFGVKYSPSG-------VYRLLKRLGFSYQKPRPRPPKAD 49 (60)
T ss_pred cccHHHHHHHHH---HHHCCEEcHHH-------HHHHHHHcCCccccCCCCcccCC
Confidence 445666666666 47889886444 45566677665544433344443
Done!