Query 013234
Match_columns 447
No_of_seqs 233 out of 2321
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 06:43:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ner_A Cytochrome B5 type B; h 99.9 5.1E-24 1.7E-28 165.1 5.8 80 3-82 7-87 (92)
2 1cyo_A Cytochrome B5; electron 99.9 4.9E-24 1.7E-28 165.8 5.7 81 2-82 1-82 (93)
3 3lf5_A Cytochrome B5 reductase 99.9 2.7E-24 9.2E-29 165.2 2.7 81 1-81 1-82 (88)
4 1cxy_A Cytochrome B5; helix, b 99.9 2E-23 6.9E-28 161.6 6.6 77 3-79 5-86 (90)
5 2ibj_A Cytochrome B5, CYTB5; F 99.9 1.7E-23 5.7E-28 161.7 4.9 79 3-81 4-83 (88)
6 1hko_A Cytochrome B5; electron 99.9 1.9E-23 6.6E-28 165.3 4.0 81 2-82 5-86 (104)
7 2keo_A Probable E3 ubiquitin-p 99.9 3.8E-24 1.3E-28 170.9 -0.4 82 1-82 19-101 (112)
8 1mj4_A Sulfite oxidase; cytoch 99.9 8.9E-23 3E-27 155.1 4.4 76 2-78 1-81 (82)
9 1x3x_A Cytochrome B5; hemoprot 99.9 1.2E-22 4.1E-27 154.6 4.0 74 5-79 3-81 (82)
10 1sox_A Sulfite oxidase; oxidor 99.7 5.7E-17 1.9E-21 162.3 5.9 78 3-81 2-84 (466)
11 1kbi_A Cytochrome B2, L-LCR; f 99.6 5.3E-17 1.8E-21 165.2 4.8 81 2-82 5-87 (511)
12 1j03_A Putative steroid bindin 99.5 6.5E-15 2.2E-19 115.8 5.5 56 6-63 3-62 (102)
13 3fbl_A Putative uncharacterize 38.8 35 0.0012 23.1 3.6 30 386-415 1-30 (82)
14 2l9u_A Receptor tyrosine-prote 30.9 17 0.00057 21.5 0.9 16 183-198 22-38 (40)
15 3bzy_B ESCU; auto cleavage pro 24.9 61 0.0021 23.6 3.2 27 388-414 27-54 (83)
16 2vt1_B Surface presentation of 21.3 78 0.0027 23.6 3.2 27 388-414 27-54 (93)
No 1
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=99.89 E-value=5.1e-24 Score=165.07 Aligned_cols=80 Identities=29% Similarity=0.567 Sum_probs=74.7
Q ss_pred CCCCCcCHHHHcccCCCCCeEEEEcCeEEecCCCcccccccccccccccCCchhhHHHh-cCcHHHHhhhhhcccccccc
Q 013234 3 DSKKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVA-YHPGAAWQYLDKFFTGYYLE 81 (447)
Q Consensus 3 ~~~~~~~~~e~~~~~~~~~~~v~i~g~vydvt~f~~~hPgg~~~l~~~~g~D~t~~f~~-~H~~~~~~~l~~~~vg~~~~ 81 (447)
+..+.||++||++||++++|||+|+|+|||||+|++.||||...|..++|+|+|+.|+. .|+..|+++|++|+||++.+
T Consensus 7 ~~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~~~~Hs~~a~~~L~~~~IG~l~~ 86 (92)
T 3ner_A 7 TSVTYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHP 86 (92)
T ss_dssp CCSCEECHHHHTTCEETTEEEEEETTEEEECGGGTTTCTTCSHHHHTTTTSBCHHHHHHTTCCHHHHHHHGGGEEEEECG
T ss_pred CCCCeeCHHHHHhhCCCCCEEEEECCEEEEcccccccCCCHHHHHHHhcCCcchHHHHHcCCCHHHHHHHHhCeeEEECh
Confidence 46789999999999999999999999999999999999999999999999999999997 69999999999999997654
Q ss_pred c
Q 013234 82 D 82 (447)
Q Consensus 82 ~ 82 (447)
+
T Consensus 87 ~ 87 (92)
T 3ner_A 87 S 87 (92)
T ss_dssp G
T ss_pred H
Confidence 3
No 2
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=99.89 E-value=4.9e-24 Score=165.83 Aligned_cols=81 Identities=28% Similarity=0.489 Sum_probs=75.0
Q ss_pred CCCCCCcCHHHHcccCCCCCeEEEEcCeEEecCCCcccccccccccccccCCchhhHHHh-cCcHHHHhhhhhccccccc
Q 013234 2 VDSKKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVA-YHPGAAWQYLDKFFTGYYL 80 (447)
Q Consensus 2 ~~~~~~~~~~e~~~~~~~~~~~v~i~g~vydvt~f~~~hPgg~~~l~~~~g~D~t~~f~~-~H~~~~~~~l~~~~vg~~~ 80 (447)
|+..+.||++||++||++++|||+|+|+|||||+|++.||||...|..++|+|+|++|+. .|+..|+++|++|+||.+.
T Consensus 1 s~~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~Hs~~a~~~L~~~~IG~l~ 80 (93)
T 1cyo_A 1 SKAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELH 80 (93)
T ss_dssp CCSCCEECHHHHTTCEETTEEEEEETTEEEECTTTTTTCTTCSHHHHHHTTSBCHHHHHHTTCCHHHHHHHTTTEEEEEC
T ss_pred CCCCCccCHHHHHhhCCCCCEEEEECCEEEECCCcchhCcChHHHHHHhcCccchHHHHHcCCCHHHHHHHHhCeeEEec
Confidence 456789999999999999999999999999999999999999999999999999999997 5999999999999999765
Q ss_pred cc
Q 013234 81 ED 82 (447)
Q Consensus 81 ~~ 82 (447)
++
T Consensus 81 ~~ 82 (93)
T 1cyo_A 81 PD 82 (93)
T ss_dssp GG
T ss_pred Cc
Confidence 43
No 3
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=99.89 E-value=2.7e-24 Score=165.19 Aligned_cols=81 Identities=33% Similarity=0.532 Sum_probs=74.5
Q ss_pred CCCCCCCcCHHHHcccCCCCCeEEEEcCeEEecCCCcccccccccccccccCCchhhHHHhcCcHH-HHhhhhhcccccc
Q 013234 1 MVDSKKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVAYHPGA-AWQYLDKFFTGYY 79 (447)
Q Consensus 1 ~~~~~~~~~~~e~~~~~~~~~~~v~i~g~vydvt~f~~~hPgg~~~l~~~~g~D~t~~f~~~H~~~-~~~~l~~~~vg~~ 79 (447)
|....+.||++||++||++++|||+|+|+|||||+|++.||||.+.|..++|+|+|+.|+++|+.. ++++|++|+||+.
T Consensus 1 ~~~~l~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~~~h~~~~~~~~L~~~~IG~l 80 (88)
T 3lf5_A 1 MKGRLIEVTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRWVNYESMLKECLVGRM 80 (88)
T ss_dssp -CCSSEEECHHHHHHCEETTEEEEEETTEEEECGGGTTTCTTCHHHHHTTTTEECHHHHHHHHTTCCHHHHTGGGEEEEE
T ss_pred CCCCCCEeCHHHHHhhCCCCCEEEEECCEEEECccchhhCcChhhhhhhcCCCcchHHHHHHCCcHHHHHHHHcCeeEEe
Confidence 667789999999999999999999999999999999999999999999999999999999988765 8889999999965
Q ss_pred cc
Q 013234 80 LE 81 (447)
Q Consensus 80 ~~ 81 (447)
.+
T Consensus 81 ~~ 82 (88)
T 3lf5_A 81 AI 82 (88)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 4
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=99.88 E-value=2e-23 Score=161.65 Aligned_cols=77 Identities=27% Similarity=0.569 Sum_probs=72.5
Q ss_pred CCCCCcCHHHHcccCCCCCeEEEEcCeEEecCCCcccccccccccccccCCchhhHHH-----hcCcHHHHhhhhhcccc
Q 013234 3 DSKKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFV-----AYHPGAAWQYLDKFFTG 77 (447)
Q Consensus 3 ~~~~~~~~~e~~~~~~~~~~~v~i~g~vydvt~f~~~hPgg~~~l~~~~g~D~t~~f~-----~~H~~~~~~~l~~~~vg 77 (447)
...+.||++||++|+++++|||+|+|+|||||+|++.||||.+.|..++|+|+|+.|+ +.|+..|+++|++|+||
T Consensus 5 ~~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~~~~~Hs~~a~~~L~~~~IG 84 (90)
T 1cxy_A 5 ATLPVFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYGEPHSSLAARLLQRYLIG 84 (90)
T ss_dssp -CCCBCCHHHHTTCEETTEEEEEETTEEEECTTTGGGCCSSTTTTGGGTTSBCHHHHHHTTTTCCCCHHHHHHHHHTEEE
T ss_pred ccCCCcCHHHHHHhcCCCCEEEEECCEEEECccchhhCcChHHHHHHHCCcchhHHHhhcccccCCCHHHHHHHHhCcee
Confidence 3568999999999999999999999999999999999999999999999999999999 78999999999999999
Q ss_pred cc
Q 013234 78 YY 79 (447)
Q Consensus 78 ~~ 79 (447)
.+
T Consensus 85 ~l 86 (90)
T 1cxy_A 85 TL 86 (90)
T ss_dssp EC
T ss_pred Ee
Confidence 64
No 5
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=99.88 E-value=1.7e-23 Score=161.69 Aligned_cols=79 Identities=25% Similarity=0.527 Sum_probs=73.8
Q ss_pred CCCCCcCHHHHcccCCCCCeEEEEcCeEEecCCCcccccccccccccccCCchhhHHHh-cCcHHHHhhhhhcccccccc
Q 013234 3 DSKKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVA-YHPGAAWQYLDKFFTGYYLE 81 (447)
Q Consensus 3 ~~~~~~~~~e~~~~~~~~~~~v~i~g~vydvt~f~~~hPgg~~~l~~~~g~D~t~~f~~-~H~~~~~~~l~~~~vg~~~~ 81 (447)
++.+.||++||++|+++++|||+|+|+|||||+|++.||||...|..++|+|+|+.|+. .|+..|+++|++|+||.+.+
T Consensus 4 ~~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~Hs~~a~~~L~~~~IG~l~~ 83 (88)
T 2ibj_A 4 EDVKYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSSDAREMMKQYKVGELVA 83 (88)
T ss_dssp CCCCEECHHHHHTSEETTEEEEEETTEEEECGGGTTTCTTCSHHHHTTTTEECHHHHHHHTCCHHHHHHHGGGEEEEECG
T ss_pred ccCCccCHHHHHHhCCCCCEEEEECCEEEECCcchhhCcCHHHHHHHhCCCcchHHHHHcCCCHHHHHHHHcCceEEeCc
Confidence 36789999999999999999999999999999999999999999999999999999996 59999999999999997654
No 6
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=99.87 E-value=1.9e-23 Score=165.31 Aligned_cols=81 Identities=28% Similarity=0.489 Sum_probs=74.9
Q ss_pred CCCCCCcCHHHHcccCCCCCeEEEEcCeEEecCCCcccccccccccccccCCchhhHHHh-cCcHHHHhhhhhccccccc
Q 013234 2 VDSKKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVA-YHPGAAWQYLDKFFTGYYL 80 (447)
Q Consensus 2 ~~~~~~~~~~e~~~~~~~~~~~v~i~g~vydvt~f~~~hPgg~~~l~~~~g~D~t~~f~~-~H~~~~~~~l~~~~vg~~~ 80 (447)
.+..+.||++||++||++++|||+|+|+|||||+|++.||||...|+.++|+|+|++|+. .|+..|+++|++|+||.+.
T Consensus 5 ~~~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aGkDaT~~F~~~~Hs~~a~~~L~~~~IG~l~ 84 (104)
T 1hko_A 5 SKAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELH 84 (104)
T ss_dssp CCCCEEECHHHHHHCBSSSSBEEEETTEEEEHHHHSSSSSSCSHHHHTTCSEECHHHHTTTTCCHHHHHHHTTTEEEEEC
T ss_pred cccCCccCHHHHHHhcCCCCEEEEECCEEEECCcchhhCcChHHHHHHhcCccchHHHHHcCCCHHHHHHHHcCeeEEEC
Confidence 346789999999999999999999999999999999999999999999999999999997 5999999999999999765
Q ss_pred cc
Q 013234 81 ED 82 (447)
Q Consensus 81 ~~ 82 (447)
++
T Consensus 85 ~~ 86 (104)
T 1hko_A 85 PD 86 (104)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 7
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}
Probab=99.87 E-value=3.8e-24 Score=170.92 Aligned_cols=82 Identities=27% Similarity=0.467 Sum_probs=75.1
Q ss_pred CCCCCCCcCHHHHcccCCCCCeEEEEcCeEEecCCCcccccccccccccccCCchhhHHHh-cCcHHHHhhhhhcccccc
Q 013234 1 MVDSKKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVA-YHPGAAWQYLDKFFTGYY 79 (447)
Q Consensus 1 ~~~~~~~~~~~e~~~~~~~~~~~v~i~g~vydvt~f~~~hPgg~~~l~~~~g~D~t~~f~~-~H~~~~~~~l~~~~vg~~ 79 (447)
|+++.+.||++||++|+++++|||+|+|+|||||+|++.||||.+.|..++|+|+|++|++ +|+..|+++|++|+||.+
T Consensus 19 m~~~~~~~t~~Ev~~h~~~~d~wvvi~G~VYDVT~fl~~HPGG~~~l~~~aGkDaT~~F~~~~Hs~~a~~~L~~~~IG~l 98 (112)
T 2keo_A 19 NNEKVTLVRIADLENHNNDGGFWTVIDGKVYDIKDFQTQSLTENSILAQFAGEDPVVALEAALQFEDTRESMHAFCVGQY 98 (112)
T ss_dssp --CCCCEECHHHHHHHHHHTCCEEEETTEEEEHHHHHHHHTSTTSTTGGGTTSCHHHHHHHHHHSTTGGGTHHHHEEEEE
T ss_pred CCCCCCccCHHHHHHhcCCCCEEEEECCEEEECCcchhhCCCchhhhhhhCCccchHHHhHcCCCHHHHHHHHhCceEee
Confidence 4566789999999999999999999999999999999999999999999999999999998 699999999999999976
Q ss_pred ccc
Q 013234 80 LED 82 (447)
Q Consensus 80 ~~~ 82 (447)
.++
T Consensus 99 ~~~ 101 (112)
T 2keo_A 99 LEP 101 (112)
T ss_dssp CCH
T ss_pred CCc
Confidence 543
No 8
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=99.86 E-value=8.9e-23 Score=155.12 Aligned_cols=76 Identities=24% Similarity=0.533 Sum_probs=67.0
Q ss_pred CCCCCCcCHHHHcccCCCCC-eEEEEcCeEEecCCCcccccccccccccccCCchhhHHHh----cCcHHHHhhhhhccc
Q 013234 2 VDSKKHISQQDLKGHNKPGD-LWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVA----YHPGAAWQYLDKFFT 76 (447)
Q Consensus 2 ~~~~~~~~~~e~~~~~~~~~-~~v~i~g~vydvt~f~~~hPgg~~~l~~~~g~D~t~~f~~----~H~~~~~~~l~~~~v 76 (447)
|++.+.||++||++||++++ |||+|+|+|||||+|+++||||.+.|+.++|+| |+.|++ .|+..|+++|++|+|
T Consensus 1 ~~~~~~~t~~ev~~h~~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~il~~aG~D-t~~f~~~~~~~hs~~a~~~L~~~~I 79 (82)
T 1mj4_A 1 QESTHIYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGP-LEPFWALYAVHNQSHVRELLAQYKI 79 (82)
T ss_dssp --CCCBCCCC-CTTCEETTTEEEEEETTEEEECTTTGGGSTTCHHHHHTTTTSB-SHHHHTTCGGGCSHHHHHHHHTTEE
T ss_pred CCCCCccCHHHHHHhcCCCCCeEEEECCEEEEchHHHHhCCCHhHHHHHHcCCC-hHHHHhhccccCcHHHHHHHHhCcc
Confidence 45678999999999999998 999999999999999999999977788899999 678884 578889999999999
Q ss_pred cc
Q 013234 77 GY 78 (447)
Q Consensus 77 g~ 78 (447)
|+
T Consensus 80 G~ 81 (82)
T 1mj4_A 80 GE 81 (82)
T ss_dssp EE
T ss_pred ee
Confidence 95
No 9
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=99.86 E-value=1.2e-22 Score=154.56 Aligned_cols=74 Identities=34% Similarity=0.565 Sum_probs=69.2
Q ss_pred CCCcCHHHHcccCCCCCeEEEEcCeEEecCCCcccccccccccccccCCchhhH--HHhcC---cHHHHhhhhhcccccc
Q 013234 5 KKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDA--FVAYH---PGAAWQYLDKFFTGYY 79 (447)
Q Consensus 5 ~~~~~~~e~~~~~~~~~~~v~i~g~vydvt~f~~~hPgg~~~l~~~~g~D~t~~--f~~~H---~~~~~~~l~~~~vg~~ 79 (447)
.+.||++||++|++++++||+|+|+|||||+|++.|||| +.|..++|+|+|++ |+++| +..|+++|++|+||.+
T Consensus 3 ~~~~t~~ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG-~~i~~~aG~D~T~~~~F~~~h~~hs~~a~~~L~~~~IG~l 81 (82)
T 1x3x_A 3 DKKYTKEEVAKHNTQNDLWIIYDGEVHDMTSFYKEHPGG-KVILNKAGQDATSVLKTLAPHVKAADVVMKKLKQTCIGKV 81 (82)
T ss_dssp SCEECHHHHHTCEETTEEEEEETTEEEECGGGGGGCTTG-GGGGGGTTSBCHHHHHHSHHHHHTHHHHHHHHHHHEEEEE
T ss_pred CCccCHHHHHhhCCCCCEEEEECCEEEECCcchhhCcCh-hhhhhhCCCCCchhhhhhcccccchHHHHHHHHhCcceEe
Confidence 478999999999999999999999999999999999999 99999999999999 99874 7789999999999953
No 10
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A*
Probab=99.65 E-value=5.7e-17 Score=162.27 Aligned_cols=78 Identities=24% Similarity=0.463 Sum_probs=71.0
Q ss_pred CCCCCcCHHHHcccCCCCC-eEEEEcCeEEecCCCcccccccccccccccCCchhhHHHh----cCcHHHHhhhhhcccc
Q 013234 3 DSKKHISQQDLKGHNKPGD-LWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVA----YHPGAAWQYLDKFFTG 77 (447)
Q Consensus 3 ~~~~~~~~~e~~~~~~~~~-~~v~i~g~vydvt~f~~~hPgg~~~l~~~~g~D~t~~f~~----~H~~~~~~~l~~~~vg 77 (447)
++.+.||++||++||++++ |||+|+|+|||||+|+++||||.+.|+.++|+| |+.|+. .|+..|+++|++|+||
T Consensus 2 ~~~~~~t~~Ev~~H~~~~d~~Wvii~g~VYDvT~fl~~HPGG~~~il~~aG~D-T~~f~~~~~~~Hs~~a~~~L~~~~IG 80 (466)
T 1sox_A 2 PSYPEYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGA-LEPFWALYAVHGEPHVLELLQQYKVG 80 (466)
T ss_dssp -CCCEECHHHHTTCEETTTEEEEEETTEEEECTTTTTTSTTCHHHHGGGTTSB-SHHHHHHSGGGGSHHHHHHHHTTEEE
T ss_pred CCCCeeCHHHHHHhcCCCCceEEEECCEEEechHhHhhCcCCcccchhhcCCc-cccccccccccCCHHHHHHHHhCceE
Confidence 4578999999999999998 999999999999999999999988899999999 999874 6888899999999999
Q ss_pred cccc
Q 013234 78 YYLE 81 (447)
Q Consensus 78 ~~~~ 81 (447)
.+.+
T Consensus 81 ~l~~ 84 (466)
T 1sox_A 81 ELSP 84 (466)
T ss_dssp EECC
T ss_pred Eecc
Confidence 7644
No 11
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=99.64 E-value=5.3e-17 Score=165.22 Aligned_cols=81 Identities=32% Similarity=0.532 Sum_probs=73.0
Q ss_pred CCCCCCcCHHHHcccCCCCCeEEEEcCeEEecCCCcccccccccccccccCCchhhHHHhcCcHHHH-hhh-hhcccccc
Q 013234 2 VDSKKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVAYHPGAAW-QYL-DKFFTGYY 79 (447)
Q Consensus 2 ~~~~~~~~~~e~~~~~~~~~~~v~i~g~vydvt~f~~~hPgg~~~l~~~~g~D~t~~f~~~H~~~~~-~~l-~~~~vg~~ 79 (447)
++..+.||++||++||++++|||+|+|+|||||+|++.||||.+.|..++|+|+|+.|+.+|+..+. ++| ++|+||..
T Consensus 5 ~~~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~i~~~aG~DaT~~f~~~H~~~~~~~~l~~~~~iG~l 84 (511)
T 1kbi_A 5 DMNKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPLHAPNVIDKYIAPEKKLGPL 84 (511)
T ss_dssp CSCSCCBCTTHHHHCEETTEEEEEETTEEEECTTTGGGCTTCHHHHHTTTTSBCHHHHGGGSCTTHHHHHSCGGGEEEEB
T ss_pred CCCCCccCHHHHHHhCCCCCEEEEECCEEEECCcchhhCcChHHHHHHHcCcchhhhhhhcCCHHHHHHhhccccEEEEe
Confidence 3457899999999999999999999999999999999999999999999999999999999998865 455 78999976
Q ss_pred ccc
Q 013234 80 LED 82 (447)
Q Consensus 80 ~~~ 82 (447)
.++
T Consensus 85 ~~~ 87 (511)
T 1kbi_A 85 QGS 87 (511)
T ss_dssp CSC
T ss_pred cCC
Confidence 543
No 12
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=99.53 E-value=6.5e-15 Score=115.77 Aligned_cols=56 Identities=23% Similarity=0.446 Sum_probs=50.4
Q ss_pred CCcCHHHHcccCCCC---CeEEEEcCeEEecCCCcc-cccccccccccccCCchhhHHHhcC
Q 013234 6 KHISQQDLKGHNKPG---DLWISVQGKVYNVTDWTK-HHPGGDLPLLSLAGQDVTDAFVAYH 63 (447)
Q Consensus 6 ~~~~~~e~~~~~~~~---~~~v~i~g~vydvt~f~~-~hPgg~~~l~~~~g~D~t~~f~~~H 63 (447)
+.||++||++||+.+ ++||+|+|+|||||+|.+ .||||. +..++|+|+|++|...+
T Consensus 3 ~~~T~~El~~~ng~~~~~~~~vaI~G~VYDVT~~~~~~hPGG~--~~~~AG~DaT~~f~~~~ 62 (102)
T 1j03_A 3 MEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGD--YSMFAGKDASRALGKMS 62 (102)
T ss_dssp CCCCHHHHTTCBSCSSSCCBEEEETTEEEECGGGHHHHSSSST--TTTTTTSBCHHHHHHTC
T ss_pred cccCHHHHHHhcCCCCCCCEEEEECCEEEECCCCccccCCCCc--ccccccchHHHHHHHcC
Confidence 689999999999876 799999999999999977 799998 45899999999999653
No 13
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=38.79 E-value=35 Score=23.07 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=23.3
Q ss_pred hhhhhHHHHHHHHHcCCCcccccHHHHHHH
Q 013234 386 LRKVSPFVVELCKKHNLPYNIVSFWKSNAM 415 (447)
Q Consensus 386 lp~~~~~v~~~~~~~g~~y~~~~~~~~~~~ 415 (447)
|++++-.++|.|+..|+|-..-+..-++.+
T Consensus 1 yhklrlaikeicktdgipnikwgmyiafge 30 (82)
T 3fbl_A 1 YHKLRLAIKEICKTDGIPNIKWGMYIAFGE 30 (82)
T ss_dssp CHHHHHHHHHHHHHTTCCGGGHHHHHHHHH
T ss_pred ChhHHHHHHHHHccCCCCcchhHHHHHHHH
Confidence 457788999999999999776666555554
No 14
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=30.87 E-value=17 Score=21.48 Aligned_cols=16 Identities=31% Similarity=0.904 Sum_probs=8.2
Q ss_pred hcCcchhhhh-hccccc
Q 013234 183 LAGISIAWWK-RNHNAH 198 (447)
Q Consensus 183 ~~~~s~~~wr-~~H~~H 198 (447)
++|..+-.|| ..|..|
T Consensus 22 ~lg~tflywrgrrhhhh 38 (40)
T 2l9u_A 22 MLGGTFLYWRGRRHHHH 38 (40)
T ss_dssp HHHHHHHHHHHHHHCCS
T ss_pred HhCceeEEEcccccccc
Confidence 3454566677 344333
No 15
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=24.87 E-value=61 Score=23.55 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHcCCCcccc-cHHHHHH
Q 013234 388 KVSPFVVELCKKHNLPYNIV-SFWKSNA 414 (447)
Q Consensus 388 ~~~~~v~~~~~~~g~~y~~~-~~~~~~~ 414 (447)
.++..+++.++|+|+|..+. ++-+++.
T Consensus 27 ~~A~~I~~~A~e~~VPi~e~~~LAr~L~ 54 (83)
T 3bzy_B 27 AKALQIIKLAELYDIPVIEDIPLARSLD 54 (83)
T ss_dssp HHHHHHHHHHHHTTCCEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEeCHHHHHHHH
Confidence 46789999999999998887 5555543
No 16
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=21.25 E-value=78 Score=23.56 Aligned_cols=27 Identities=7% Similarity=-0.015 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHcCCCcccc-cHHHHHH
Q 013234 388 KVSPFVVELCKKHNLPYNIV-SFWKSNA 414 (447)
Q Consensus 388 ~~~~~v~~~~~~~g~~y~~~-~~~~~~~ 414 (447)
.++..+++.++|+|+|..+. ++-+++.
T Consensus 27 ~~A~~I~e~A~e~gVPi~e~~~LAr~Ly 54 (93)
T 2vt1_B 27 QCALAVRKYANEVGIPTVRDVKLARKLY 54 (93)
T ss_dssp HHHHHHHHHHHHTTCCEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEECHHHHHHHH
Confidence 46788999999999998776 5444443
Done!