BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013235
(447 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 211 bits (537), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 131/353 (37%), Positives = 187/353 (52%), Gaps = 10/353 (2%)
Query: 81 KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN 140
+P+ + K +++D +GR LD G + GHCHP +V I ++ H L+
Sbjct: 23 EPMIIERAKGSFVYDADGRAILDFTSGAMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLS 82
Query: 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG 200
+ D A LA+ P L ++G E+NE AI MA+L TG +I+ ++HG
Sbjct: 83 RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGA 142
Query: 201 TMGATAQSNWKFNVVQTGVHHALNPDP--YRGVFGADGEM-YAKDVQ---DLIDFGTSGH 254
AT + K V V P P YR F +G Y ++ DLID +SG+
Sbjct: 143 AASATYSAGRK-GVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGN 201
Query: 255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG 314
+A F++E I GGIIEL GY+ A+ + + G L I DE Q G RTG+ F + G
Sbjct: 202 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDG 260
Query: 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY--FNTFGGNPVCTAAGHAVLKVIQ 372
V PDI+T++K +G G+PL A+VT+ I E Y + T +P+ A G VL V+Q
Sbjct: 261 VTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ 320
Query: 373 KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA 425
+D L A+V+G L+ L L +++ IGDVRGRG LLGVE V DR+ K PA
Sbjct: 321 RDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPA 373
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 211 bits (536), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 131/353 (37%), Positives = 187/353 (52%), Gaps = 10/353 (2%)
Query: 81 KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN 140
+P+ + K +++D +GR LD G + GHCHP +V I ++ H L+
Sbjct: 25 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLS 84
Query: 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG 200
+ D A LA+ P L ++G E+NE AI MA+L TG +I+ ++HG
Sbjct: 85 RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGA 144
Query: 201 TMGATAQSNWKFNVVQTGVHHALNPDP--YRGVFGADGEM-YAKDVQ---DLIDFGTSGH 254
AT + K V V P P YR F +G Y ++ DLID +SG+
Sbjct: 145 AASATYSAGRK-GVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGN 203
Query: 255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG 314
+A F++E I GGIIEL GY+ A+ + + G L I DE Q G RTG+ F + G
Sbjct: 204 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDG 262
Query: 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY--FNTFGGNPVCTAAGHAVLKVIQ 372
V PDI+T++K +G G+PL A+VT+ I E Y + T +P+ A G VL V+Q
Sbjct: 263 VTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ 322
Query: 373 KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA 425
+D L A+V+G L+ L L +++ IGDVRGRG LLGVE V DR+ K PA
Sbjct: 323 RDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPA 375
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 131/353 (37%), Positives = 187/353 (52%), Gaps = 10/353 (2%)
Query: 81 KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN 140
+P+ + K +++D +GR LD G + GHCHP +V I ++ H L+
Sbjct: 25 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSGMLS 84
Query: 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG 200
+ D A LA+ P L ++G E+NE AI MA+L TG +I+ ++HG
Sbjct: 85 RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGA 144
Query: 201 TMGATAQSNWKFNVVQTGVHHALNPDP--YRGVFGADGEM-YAKDVQ---DLIDFGTSGH 254
AT + K V V P P YR F +G Y ++ DLID +SG+
Sbjct: 145 AASATYSAGRK-GVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGN 203
Query: 255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG 314
+A F++E I GGIIEL GY+ A+ + + G L I DE Q G RTG+ F + G
Sbjct: 204 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDG 262
Query: 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY--FNTFGGNPVCTAAGHAVLKVIQ 372
V PDI+T++K +G G+PL A+VT+ I E Y + T +P+ A G VL V+Q
Sbjct: 263 VTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ 322
Query: 373 KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA 425
+D L A+V+G L+ L L +++ IGDVRGRG LLGVE V DR+ K PA
Sbjct: 323 RDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPA 375
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/353 (37%), Positives = 187/353 (52%), Gaps = 10/353 (2%)
Query: 81 KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN 140
+P+ + K +++D +GR LD G + GHCHP +V I ++ H L+
Sbjct: 24 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSGMLS 83
Query: 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG 200
+ D A LA+ P L ++G E+NE AI MA+L TG +I+ ++HG
Sbjct: 84 RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGA 143
Query: 201 TMGATAQSNWKFNVVQTGVHHALNPDP--YRGVFGADGEM-YAKDVQ---DLIDFGTSGH 254
AT + K V V P P YR F +G Y ++ DLID +SG+
Sbjct: 144 AASATYSAGRK-GVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGN 202
Query: 255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG 314
+A F++E I GGIIEL GY+ A+ + + G L I DE Q G RTG+ F + G
Sbjct: 203 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDG 261
Query: 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY--FNTFGGNPVCTAAGHAVLKVIQ 372
V PDI+T++K +G G+PL A+VT+ I E Y + T +P+ A G VL V+Q
Sbjct: 262 VTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ 321
Query: 373 KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA 425
+D L A+V+G L+ L L +++ IGDVRGRG LLGVE V DR+ K PA
Sbjct: 322 RDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPA 374
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 126/368 (34%), Positives = 193/368 (52%), Gaps = 28/368 (7%)
Query: 75 LFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH 133
L + YS+ P V GK +++DE G YLD GIA GH HP +V++I +Q +++ H
Sbjct: 3 LMNTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIH 62
Query: 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND-----II 188
+ L+ N + AE L+ G VFF N+GTEANE AI +AR Y I+
Sbjct: 63 CSNLFWNRPQMELAELLSKNTFGG--KVFFANTGTEANEAAIKIARKYGKKKSEKKYRIL 120
Query: 189 SLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID 248
S N++HG G++ AT Q ++ P+ + +V+DL
Sbjct: 121 SAHNSFHGRTLGSLTATGQPKYQ--------------KPFEPLVPGFEYFEFNNVEDLRR 166
Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
+ A FL E IQG GI+ +L K + L + DEVQ G RTG F
Sbjct: 167 KMSEDVCAVFL-EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLF- 224
Query: 309 GFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL 368
++ +GVVPD++T AKG+G G+P+GAV+ E A VL ++ TFGGNP+ AG V+
Sbjct: 225 AYQKYGVVPDVLTTAKGLGGGVPIGAVIVN-ERANVLEPGDHGTTFGGNPLACRAGVTVI 283
Query: 369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF---VTDRQLKTPA 425
K + K+ G+YL ++L +K++Y ++ DVRG G ++G++F V++R++ T
Sbjct: 284 KELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVSNREVATKC 343
Query: 426 KAETLYIM 433
L ++
Sbjct: 344 FENKLLVV 351
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 126/368 (34%), Positives = 191/368 (51%), Gaps = 28/368 (7%)
Query: 75 LFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH 133
L + YS+ P V GK +++DE G YLD GIA GH HP +V++I +Q +++ H
Sbjct: 15 LXNTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIH 74
Query: 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND-----II 188
+ L+ N + AE L+ G VFF N+GTEANE AI +AR Y I+
Sbjct: 75 CSNLFWNRPQXELAELLSKNTFGG--KVFFANTGTEANEAAIKIARKYGKKKSEKKYRIL 132
Query: 189 SLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID 248
S N++HG G++ AT Q ++ P+ + +V+DL
Sbjct: 133 SAHNSFHGRTLGSLTATGQPKYQ--------------KPFEPLVPGFEYFEFNNVEDLRR 178
Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
+ A FL E IQG GI+ +L K + L + DEVQ G RTG F
Sbjct: 179 KXSEDVCAVFL-EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGXGRTGKLF- 236
Query: 309 GFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL 368
++ +GVVPD++T AKG+G G+P+GAV+ E A VL ++ TFGGNP+ AG V+
Sbjct: 237 AYQKYGVVPDVLTTAKGLGGGVPIGAVIVN-ERANVLEPGDHGTTFGGNPLACRAGVTVI 295
Query: 369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF---VTDRQLKTPA 425
K + K+ G+YL ++L K++Y ++ DVRG G +G++F V++R++ T
Sbjct: 296 KELTKEGFLEEVEEKGNYLXKKLQEXKEEYDVVADVRGXGLXIGIQFREEVSNREVATKC 355
Query: 426 KAETLYIM 433
L ++
Sbjct: 356 FENKLLVV 363
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 182 bits (462), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 124/351 (35%), Positives = 181/351 (51%), Gaps = 41/351 (11%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
P+ V GK YL+DE G+ YLD GI GH +P + +++ Q++++ H + LY N
Sbjct: 11 PVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENP 70
Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCND--IISLRNAYHG 196
+ A L KV FF NSGTE+ E AI +AR Y G N IS N++HG
Sbjct: 71 WQEELAHKLVKHFWTEGKV-FFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHG 129
Query: 197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK-----DVQDLIDFGT 251
G++ AT Q + H P G YAK V L+D T
Sbjct: 130 RTYGSLSATGQPKF---------HKGFEPL-------VPGFSYAKLNDIDSVYKLLDEET 173
Query: 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE 311
AG + E IQG GG+ E + +L + + K+ L I DEVQ G RTG F+ ++
Sbjct: 174 ----AGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE-FYAYQ 228
Query: 312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI 371
+ PD++ +AKG+G G+P+GA++ E+A+ T ++ +TFGGNP+ AG V V
Sbjct: 229 HFNLKPDVIALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVV--VD 286
Query: 372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLK 422
+ +KL + VG+Y KE+L L G V+GRG +LG+E +R+ K
Sbjct: 287 EVEKLLPHVREVGNYFKEKLKELGK-----GKVKGRGLMLGLEL--ERECK 330
>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|B Chain B, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|C Chain C, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|D Chain D, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
Length = 453
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 132/375 (35%), Positives = 186/375 (49%), Gaps = 9/375 (2%)
Query: 54 PYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCC 113
P GP + + +R+ +S + + P+ VD + D +G ++D GIA
Sbjct: 21 PLPGPRSGALAERRRAAVSAGVGS--TAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTV 78
Query: 114 GHCHPYVVDSIVNQIKRIQHSTVLYLNHA-IADFAEALASKMPGNL-KVVFFTNSGTEAN 171
G HP V +I +Q H+ + + AE L + PG+ K NSG EA
Sbjct: 79 GASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAV 138
Query: 172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS---NWKFNVVQTGVHHALNPDPY 228
E AI +ARL TG +++ NAYHG TM TA+S +F V+ P
Sbjct: 139 ENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPL 198
Query: 229 RGVFGADGEMYAKDVQDLIDFGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA 287
R G GE A+ I+ +A + E IQG GG I APG+L + +
Sbjct: 199 RDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASEN 258
Query: 288 GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR 347
G + IADEVQ GFARTG+ F E G+VPDIVTMA GI G+PL AV E+ + +
Sbjct: 259 GVVFIADEVQTGFARTGAWF-ASEHEGIVPDIVTMAXGIAGGMPLSAVTGRAELMDAVYA 317
Query: 348 RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR 407
T+GGNPV AA A L V+++ L A + + + RL+AL ++ IIG+VRGR
Sbjct: 318 GGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGR 377
Query: 408 GFLLGVEFVTDRQLK 422
G +L +E V L+
Sbjct: 378 GAMLAIEIVKPGTLE 392
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/333 (30%), Positives = 163/333 (48%), Gaps = 18/333 (5%)
Query: 83 LNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA 142
L +V G+ ++D G Y+D GG GH +P VV+++ Q + +
Sbjct: 29 LLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPM 88
Query: 143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTM 202
+F L + +P L VF NSGTEANE A+ AR +TG ++ + G G++
Sbjct: 89 RGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSL 148
Query: 203 GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES 262
T + ++ +P+ + + DV+ L A + E
Sbjct: 149 SVTWEPKYR--------------EPFLPLVEPVEFIPYNDVEAL-KRAVDEETAAVILEP 193
Query: 263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM 322
+QG GG+ P +L A + ++ G L I DE+Q G RTG F FE G+VPDI+T+
Sbjct: 194 VQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF-AFEHFGIVPDILTL 252
Query: 323 AKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHV 382
AK +G G+PLG V E+A + + + TFGGNP+ AAG A ++ +++ +L A
Sbjct: 253 AKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAE 312
Query: 383 VGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
+G + E+L A+ I +VRG G ++G+E
Sbjct: 313 LGPWFMEKLRAIPSPK--IREVRGMGLMVGLEL 343
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 173/350 (49%), Gaps = 8/350 (2%)
Query: 93 LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA-IADFAEALA 151
++D GR YLD GGIA + GH HP VV ++ Q+K++ H+ L + + E +
Sbjct: 35 VWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMN 94
Query: 152 SKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN- 209
K+PG+ K +G+EA E A+ +AR T + I+ AYHG T+ T + N
Sbjct: 95 QKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNP 154
Query: 210 --WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVG 267
++ V+ AL P P G+ ++ + A + + +A + E +QG G
Sbjct: 155 YSAGMGLMPGHVYRALYPCPLHGI--SEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGSG 212
Query: 268 GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG 327
G +P ++ + + G + IADEVQ+G RTG+ F E GV PD+ T AK I
Sbjct: 213 GFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLF-AMEQMGVAPDLTTFAKSIA 271
Query: 328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYL 387
G PL V E+ + + T+ GNP+ A VLKV +++ L A+ +G L
Sbjct: 272 GGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKL 331
Query: 388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK 437
K+ L A+ +K+ IGDVRG G ++ +E D P T I+ + +
Sbjct: 332 KDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARAR 381
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 122/385 (31%), Positives = 184/385 (47%), Gaps = 24/385 (6%)
Query: 61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQ--YLFDENGRRYLDAFGGIATVCCGHCHP 118
DE+LAK + ++ +S V K + ++ D G+RYLD G+ V G+
Sbjct: 10 DELLAKDEQYVWHGX-RPFSPNSTTVGAKAEGCWVEDIQGKRYLDGXSGLWCVNSGYGRK 68
Query: 119 YVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA 178
+ ++ Q++ + + + AE L + G V+FF+NSG+EANE A +A
Sbjct: 69 ELAEAAYKQLQTLSYFPXSQSHEPAIKLAEKLNEWLGGEY-VIFFSNSGSEANETAFKIA 127
Query: 179 RLYTGCN------DIISLRNAYHGNAAGTMG--ATAQSNWKFNVVQTGVHHALNPDPYRG 230
R Y S YHGN T AQ +++ +G H PD YR
Sbjct: 128 RQYYAQKGEPHRYKFXSRYRGYHGNTXATXAATGQAQRRYQYEPFASGFLHVTPPDCYRX 187
Query: 231 VFGADGEMY----AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK 286
+Y K+V + + S +A F+ E I GGI+ Y AV+++ +K
Sbjct: 188 PGIERENIYDVECVKEVDRVXTWELSETIAAFIXEPIITGGGILXAPQDYXKAVHETCQK 247
Query: 287 AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL 345
G L I+DEV GF RTG F GF + V PDI+T AKGI + +PL A EI E
Sbjct: 248 HGALLISDEVICGFGRTGKAF-GFXNYDVKPDIITXAKGITSAYLPLSATAVKREIYEAF 306
Query: 346 TRR------NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG 399
+ + NTFGGNP A L++I+ + L + GS L E+L ++
Sbjct: 307 KGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQXGSLLLEQLKEEIGEHP 366
Query: 400 IIGDVRGRGFLLGVEFVTDRQLKTP 424
++GD+RG+G L+G+E V D++ K P
Sbjct: 367 LVGDIRGKGLLVGIELVNDKETKEP 391
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 169 bits (427), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 173/350 (49%), Gaps = 8/350 (2%)
Query: 93 LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA-IADFAEALA 151
++D GR YLD GGIA + GH HP VV ++ Q+K++ H+ L + + E +
Sbjct: 35 VWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMN 94
Query: 152 SKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN- 209
K+PG+ K +G+EA E A+ +AR T + I+ AYHG T+ T + N
Sbjct: 95 QKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNP 154
Query: 210 --WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVG 267
++ V+ AL P P G+ ++ + A + + +A + E +QG G
Sbjct: 155 YSAGMGLMPGHVYRALYPCPLHGI--SEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEG 212
Query: 268 GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG 327
G +P ++ + + G + IADEVQ+G RTG+ F E GV PD+ T AK I
Sbjct: 213 GFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLF-AMEQMGVAPDLTTFAKSIA 271
Query: 328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYL 387
G PL V E+ + + T+ GNP+ A VLKV +++ L A+ +G L
Sbjct: 272 GGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKL 331
Query: 388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK 437
K+ L A+ +K+ IGDVRG G ++ +E D P T I+ + +
Sbjct: 332 KDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARAR 381
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 172/350 (49%), Gaps = 8/350 (2%)
Query: 93 LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA-IADFAEALA 151
++D GR YLD GGIA + GH HP VV ++ Q+K++ H+ L + + E +
Sbjct: 35 VWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMN 94
Query: 152 SKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN- 209
K+PG+ K +G+EA E A+ +AR T + I+ AYHG T+ T + N
Sbjct: 95 QKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNP 154
Query: 210 --WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVG 267
++ V+ AL P P G+ ++ + A + + +A + E +QG G
Sbjct: 155 YSAGMGLMPGHVYRALYPCPLHGI--SEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEG 212
Query: 268 GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG 327
G +P ++ + + G + IADE Q+G RTG+ F E GV PD+ T AK I
Sbjct: 213 GFYASSPAFMQRLRALCDEHGIMLIADEAQSGAGRTGTLF-AMEQMGVAPDLTTFAKSIA 271
Query: 328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYL 387
G PL V E+ + + T+ GNP+ A VLKV +++ L A+ +G L
Sbjct: 272 GGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKL 331
Query: 388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK 437
K+ L A+ +K+ IGDVRG G ++ +E D P T I+ + +
Sbjct: 332 KDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARAR 381
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 123/372 (33%), Positives = 186/372 (50%), Gaps = 16/372 (4%)
Query: 57 GPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHC 116
GP++ E+ +R +S + + P+ VV + D +G R +D GIA G+
Sbjct: 38 GPASLELNKRRAAAVSGGVG--VTLPVFVVRAGGGIVEDADGNRLIDLGSGIAVTTIGNS 95
Query: 117 HPYVVDSIVNQIKRIQHSTVLYLNHA-IADFAEALASKMPGN--LKVVFFTNSGTEANEL 173
P VVD++ +Q+++ H+ + + AE L PG+ + V F NSG EA E
Sbjct: 96 APRVVDAVRDQVEQFTHTCFMVTPYEQYVAVAEQLNRITPGSGEKRTVLF-NSGAEAVEN 154
Query: 174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS---NWKFNVVQTGVHHALNPDPYRG 230
+I +AR +T +++ AYHG TM TA+S F ++ A PYR
Sbjct: 155 SIKVARAHTRKQAVVAFDYAYHGRTNLTMALTAKSMPYKSGFGPFAPEIYRAPVSYPYRD 214
Query: 231 VF-----GADGEMYAKDVQDLIDFGT-SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSI 284
DGE+ A+ +LID + ++A + E I G GG I A G+LPA+ +
Sbjct: 215 NLLDKDIATDGELAAERAINLIDKQIGAANLAAVIIEPIAGEGGFIVPADGFLPALQRWC 274
Query: 285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV 344
+ + IADEVQ GFARTG+ F + V PD++ A GI +G PL AV EI +
Sbjct: 275 RDNDVVFIADEVQTGFARTGAMF-ACDHENVEPDLIVTAXGIADGFPLSAVTGRAEIMDA 333
Query: 345 LTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404
TFGGNPV AA A ++ I++D + A + + +RL L+ +GDV
Sbjct: 334 PHTSGLGGTFGGNPVACAAALATIETIERDGMVERARQIERLVMDRLLRLQAADDRLGDV 393
Query: 405 RGRGFLLGVEFV 416
RGRG ++ +E V
Sbjct: 394 RGRGAMIAMELV 405
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 172/350 (49%), Gaps = 8/350 (2%)
Query: 93 LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA-IADFAEALA 151
++D GR YLD GG A + GH HP VV ++ Q+K++ H+ L + + E +
Sbjct: 35 VWDVEGREYLDFAGGQAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMN 94
Query: 152 SKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN- 209
K+PG+ K +G+EA E A+ +AR T + I+ AYHG T+ T + N
Sbjct: 95 QKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNP 154
Query: 210 --WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVG 267
++ V+ AL P P G+ ++ + A + + +A + E +QG G
Sbjct: 155 YSAGMGLMPGHVYRALYPCPLHGI--SEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEG 212
Query: 268 GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG 327
G +P ++ + + G + IADEVQ+G RTG+ F E GV PD+ T AK I
Sbjct: 213 GFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLF-AMEQMGVAPDLTTFAKSIA 271
Query: 328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYL 387
G PL V E+ + + T+ GNP+ A VLKV +++ L A+ +G L
Sbjct: 272 GGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKL 331
Query: 388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK 437
K+ L A+ +K+ IGDVRG G ++ +E D P T I+ + +
Sbjct: 332 KDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARAR 381
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 107/345 (31%), Positives = 166/345 (48%), Gaps = 28/345 (8%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
P V G+ L+D+ G+ Y+D GGIA GH HP + +++ Q + H+ Y N
Sbjct: 22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNE 81
Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYH 195
+ A+ L + VFF NSG EANE A+ +AR + + + I++ +NA+H
Sbjct: 82 PVLRLAKKLIDATFADR--VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFH 139
Query: 196 GNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG 253
G T+ A Q + F + + HA D LID T
Sbjct: 140 GRTLFTVSAGGQPAYSQDFAPLPADIRHAAYND-------------INSASALIDDST-- 184
Query: 254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH 313
+ E IQG GG++ + +L + + + L I DEVQ G RTG + + +
Sbjct: 185 --CAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGE-LYAYMHY 241
Query: 314 GVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK 373
GV PD++T AK +G G P+GA++ T E A V+T + T+GGNP+ +A VL++I
Sbjct: 242 GVTPDLLTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINT 301
Query: 374 DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
++ N + ERL + +YG+ +VRG G L+G D
Sbjct: 302 PEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNAD 346
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/336 (30%), Positives = 161/336 (47%), Gaps = 24/336 (7%)
Query: 86 VDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIAD 145
V GK ++D+ G+ Y+D GGIA GHCHP +V+++ +Q + + H++ ++ N
Sbjct: 44 VKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALR 103
Query: 146 FAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC------NDIISLRNAYHGNAA 199
L + V F NSGTEANE A +AR Y II+ NA+HG +
Sbjct: 104 LGRKLIDAT--FAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSL 161
Query: 200 GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFL 259
T+ Q + P P + +++A V+ ++D H +
Sbjct: 162 FTVSVGGQPKYS---------DGFGPKPADIIHVPFNDLHA--VKAVMD----DHTCAVV 206
Query: 260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDI 319
E IQG GG+ P +L + + L + DEVQ G RTG F + +GV PDI
Sbjct: 207 VEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLF-AYMHYGVTPDI 265
Query: 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNN 379
+T AK +G G P+ A++TT EIA ++ +T+GGNP+ A A +I ++
Sbjct: 266 LTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQG 325
Query: 380 AHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
H + L A+ +++ I D+RG G L+G E
Sbjct: 326 IHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAEL 361
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 161 bits (407), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 125/366 (34%), Positives = 183/366 (50%), Gaps = 10/366 (2%)
Query: 57 GPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHC 116
GP + E+ A++++ ++ + + P+ VV L D +G + +D GIA G+
Sbjct: 28 GPISQELQARKQSAVAAGVG--VTLPVYVVAAGGGVLADADGNQLIDFGSGIAVTTVGNS 85
Query: 117 HPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMPGN-LKVVFFTNSGTEANELA 174
P VVD++ Q+ H+ + + AE L PG+ K NSG EA E A
Sbjct: 86 APAVVDAVTQQVAAFTHTCFMVTPYEGYVKVAEHLNRLTPGDHEKRTALFNSGAEAVENA 145
Query: 175 IMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN-WK--FNVVQTGVHHALNPDPYRGV 231
+ +AR YT ++ +AYHG TM TA++ +K F V+ P+R
Sbjct: 146 VKIARAYTRRQAVVVFDHAYHGRTNLTMAMTAKNQPYKHGFGPFANEVYRVPTSYPFRD- 204
Query: 232 FGADGEMYAKDVQDLIDFGT-SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGL 290
DG A DLI+ + +VA + E + G GG + APG+L A+ K G +
Sbjct: 205 GETDGAAAAAHALDLINKQVGADNVAAVVIEPVHGEGGFVVPAPGFLGALQKWCTDNGAV 264
Query: 291 CIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY 350
+ADEVQ GFARTG+ F E VVPD++ AKGI G+PL AV EI +
Sbjct: 265 FVADEVQTGFARTGALF-ACEHENVVPDLIVTAKGIAGGLPLSAVTGRAEIMDGPQSGGL 323
Query: 351 FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL 410
T+GGNP+ AA AV+ I+++ L A +G + RL AL IG+VRGRG +
Sbjct: 324 GGTYGGNPLACAAALAVIDTIERENLVARARAIGETMLSRLGALAAADPRIGEVRGRGAM 383
Query: 411 LGVEFV 416
+ VE V
Sbjct: 384 IAVELV 389
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 119/372 (31%), Positives = 185/372 (49%), Gaps = 16/372 (4%)
Query: 57 GPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHC 116
GP + ++ ++ T ++ + + P+ V + D +G R +D GIA G+
Sbjct: 21 GPRSQALIDRKGTAVARGVG--TTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNS 78
Query: 117 HPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMP--GNLKVVFFTNSGTEANEL 173
P VV+++ +Q+ H+ + + E L P G+ + F NSG+EA E
Sbjct: 79 APKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALF-NSGSEAVEN 137
Query: 174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS---NWKFNVVQTGVHHALNPDPYRG 230
A+ +AR +T +++ +AYHG TM TA+ F ++ A P+R
Sbjct: 138 AVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRD 197
Query: 231 V-FG----ADGEMYAKDVQDLIDFGT-SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSI 284
FG DGE+ AK +ID + ++A + E IQG GG I A G+LP +
Sbjct: 198 AEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWC 257
Query: 285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV 344
+K + IADEVQ GFARTG+ F E G+ PD++ A GI G+PL AV EI +
Sbjct: 258 RKNDVVFIADEVQTGFARTGAMF-ACEHEGIDPDLIVTAXGIAGGLPLSAVTGRAEIMDS 316
Query: 345 LTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404
T+GGNP+ AA A ++ I+ + L A + +K+RL L+ + IGDV
Sbjct: 317 PHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDV 376
Query: 405 RGRGFLLGVEFV 416
RGRG ++ +E V
Sbjct: 377 RGRGAMIAMELV 388
>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
pdb|3DXW|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
Length = 452
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/355 (33%), Positives = 176/355 (49%), Gaps = 5/355 (1%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
PL + G+ L +ENGR +D G G+ HP +V ++ +T+L ++
Sbjct: 39 PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 98
Query: 142 AIA-DFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199
A A AE L + PG ++F +SG++ANE A TG + +I+ AYHG
Sbjct: 99 APAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTV 158
Query: 200 GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFG-ADGEMYAKDVQDLIDFGTSGHVAGF 258
G+M + S G+ PDPYR G+ + + + +G +
Sbjct: 159 GSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAA 218
Query: 259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD 318
E IQ GG+I G+L + G L + DEV+ G AR+G FE G VPD
Sbjct: 219 FIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSG-RLHCFEHEGFVPD 277
Query: 319 IVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQN 378
I+ + KG+G G+PL AV+ EI + + T GNP+ AAG AVL+ I +D L
Sbjct: 278 ILVLGKGLGGGLPLSAVIAPAEILDCASA-FAMQTLHGNPISAAAGLAVLETIDRDDLPA 336
Query: 379 NAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIM 433
A G L++ L+ L ++ +IGD+RGRG G+E V DRQ + PA+AET ++
Sbjct: 337 MAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLI 391
>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
pdb|3NUI|B Chain B, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
Length = 478
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 111/380 (29%), Positives = 178/380 (46%), Gaps = 29/380 (7%)
Query: 85 VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHA 142
V G+ Y+ D NGRRYLDA G+ + G H ++D+ Q +R H+ ++
Sbjct: 47 VTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQ 106
Query: 143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN------DIISLRNAYHG 196
+E L P + VF+TNSG+EAN+ + M I++ NAYHG
Sbjct: 107 TVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHG 166
Query: 197 NAAGTMGATAQS-NWKFNVVQTGVHHALNPDPYRGVFGADGEM-------YAKDVQDLID 248
A + T + N F + G H P +R +G +GE A+++++ I
Sbjct: 167 VTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWR--YGEEGETEEQFVARLARELEETIQ 224
Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
+ +AGF +E + G GG+I A GY A+ ++K I+DEV GF RTG+ W
Sbjct: 225 REGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNT-W 283
Query: 309 GFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIA-------EVLTRRNYFNTFGGNPVC 360
G + PD + +K + G P+GAV+ PE++ E + + T G+PV
Sbjct: 284 GCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVG 343
Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
A + V+ + L N + +ERL + ++ IG+ RG GF+ +E V D+
Sbjct: 344 CAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPN-IGEYRGIGFMWALEAVKDKA 402
Query: 421 LKTPAKAETLYIMDKMKGIC 440
KTP L + +++ C
Sbjct: 403 SKTPFDG-NLSVSERIANTC 421
>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|2ZUK|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|3DXV|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
pdb|3DXV|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
Length = 439
Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 118/355 (33%), Positives = 176/355 (49%), Gaps = 5/355 (1%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
PL + G+ L +ENGR +D G G+ HP +V ++ +T+L ++
Sbjct: 26 PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 85
Query: 142 AIA-DFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199
A A AE L + PG ++F +SG++ANE A TG + +I+ AYHG
Sbjct: 86 APAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTV 145
Query: 200 GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFG-ADGEMYAKDVQDLIDFGTSGHVAGF 258
G+M + S G+ PDPYR G+ + + + +G +
Sbjct: 146 GSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAA 205
Query: 259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD 318
E IQ GG+I G+L + G L + DEV+ G AR+G FE G VPD
Sbjct: 206 FIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSG-RLHCFEHEGFVPD 264
Query: 319 IVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQN 378
I+ + KG+G G+PL AV+ EI + + T GNP+ AAG AVL+ I +D L
Sbjct: 265 ILVLGKGLGGGLPLSAVIAPAEILDCASA-FAMQTLHGNPISAAAGLAVLETIDRDDLPA 323
Query: 379 NAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIM 433
A G L++ L+ L ++ +IGD+RGRG G+E V DRQ + PA+AET ++
Sbjct: 324 MAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLI 378
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 148 bits (374), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 120/369 (32%), Positives = 179/369 (48%), Gaps = 38/369 (10%)
Query: 72 SPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKR 130
P LF PL + G+ +++D +G +YLD GI G HP V+ + Q+++
Sbjct: 20 DPELF-----PLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQK 74
Query: 131 IQHSTVL-YLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDII 188
+ H+ + N + A+ L + PGN K VFF+NSGTEA E +I + + TG II
Sbjct: 75 LAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVK-NTGRKYII 133
Query: 189 SLRNAYHGNAAGTMGATAQSNWKFNVV---QTGVHHALNPDPYRGVFGADG-EMYAKDVQ 244
+ +HG G++ TA + ++V GV H P+PYR + +G E ++ V
Sbjct: 134 AFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVN 193
Query: 245 DLIDFGTS---------GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE 295
+I+F VAG E IQG GG + + + K KK G L + DE
Sbjct: 194 RVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDE 253
Query: 296 VQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFNTF 354
VQ G RTG F E VPD++T+AK +G GI P+GA + ++ + NTF
Sbjct: 254 VQMGLGRTGKLF-AIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD--FKPGMHSNTF 310
Query: 355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414
GGN + A G V+ +++ L + + +G E L L D DVRG G G+E
Sbjct: 311 GGNALACAIGSKVIDIVK--DLLPHVNEIGKIFAEELQGLAD------DVRGIGLAWGLE 362
Query: 415 F----VTDR 419
+ V DR
Sbjct: 363 YNEKKVRDR 371
>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|B Chain B, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|C Chain C, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|D Chain D, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 110/380 (28%), Positives = 176/380 (46%), Gaps = 29/380 (7%)
Query: 85 VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHA 142
V G+ Y+ D NGRRYLDA G+ + G H ++D+ Q +R H+ ++
Sbjct: 53 VTHGEGPYIVDVNGRRYLDANSGLFNMVAGFDHKGLIDAAKAQYERFPGYHAAFGKMSDQ 112
Query: 143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN------DIISLRNAYHG 196
+E L P + VF+TNSG+EAN+ + M I++ NAYHG
Sbjct: 113 TVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHG 172
Query: 197 NAAGTMGATA-QSNWKFNVVQTGVHHALNPDPYRGVFGADGEM-------YAKDVQDLID 248
A + T N F + G H P +R +G +GE A+++++ I
Sbjct: 173 ATAVSASMTGFPYNSVFGLPLPGFVHLTCPHYWR--YGEEGETEEQFVARLARELEETIQ 230
Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
+ +AGF +E + G GG+I A GY A+ ++K I+DEV GF RTG+ W
Sbjct: 231 REGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVVCGFGRTGNT-W 289
Query: 309 GFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIA-------EVLTRRNYFNTFGGNPVC 360
G + PD + + + G P+GAV+ PE++ E + + T G+PV
Sbjct: 290 GCVTYDFTPDAIISSXNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVG 349
Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
A + V+ + L N + +ERL + ++ IG+ RG GF+ +E V D+
Sbjct: 350 CAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPN-IGEYRGIGFMWALEAVKDKA 408
Query: 421 LKTPAKAETLYIMDKMKGIC 440
KTP L + +++ C
Sbjct: 409 SKTPFDG-NLSVSERIANTC 427
>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
pdb|3HMU|B Chain B, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
Length = 472
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 180/356 (50%), Gaps = 23/356 (6%)
Query: 92 YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVLYLNH--AIADFAE 148
+L D G LDA G+ V G+ + + Q++ + + +T H AIA A+
Sbjct: 48 WLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIA-LAQ 106
Query: 149 ALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND------IISLRNAYHGN--AAG 200
LA PG+L VFF G+EAN+ I M R Y IIS +NAYHG+ A+
Sbjct: 107 KLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASS 166
Query: 201 TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMY----AKDVQDLIDFGTSGHVA 256
+G A + + ++ VHH P+ + D E + A+++++ I VA
Sbjct: 167 ALGGMAGMHAQSGLIPD-VHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVA 225
Query: 257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVV 316
F++E +QG GG+I Y P + + K L IADEV GF RTG+ F G + G+
Sbjct: 226 AFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWF-GTQTMGIR 284
Query: 317 PDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAVLKVIQK 373
P I+T+AKG+ +G P+G + E+A V+ + N+ T+ G+PV A L+++++
Sbjct: 285 PHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEE 344
Query: 374 DKLQNNA-HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAE 428
+ + ++ +V YLKE+ AL D + ++G+ + G + + ++ + +E
Sbjct: 345 ENILDHVRNVAAPYLKEKWEALTD-HPLVGEAKIVGMMASIALTPNKASRAKFASE 399
>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|B Chain B, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|C Chain C, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|D Chain D, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/380 (28%), Positives = 173/380 (45%), Gaps = 29/380 (7%)
Query: 85 VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHA 142
V G+ Y+ D NGRRYLDA G+ G H ++D+ Q +R H+ +
Sbjct: 53 VTHGEGPYIVDVNGRRYLDANSGLWNXVAGFDHKGLIDAAKAQYERFPGYHAFFGRXSDQ 112
Query: 143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN------DIISLRNAYHG 196
+E L P + VF+TNSG+EAN+ + I++ NAYHG
Sbjct: 113 TVXLSEKLVEVSPFDSGRVFYTNSGSEANDTXVKXLWFLHAAEGKPQKRKILTRWNAYHG 172
Query: 197 NAAGTMGATAQS-NWKFNVVQTGVHHALNPDPYRGVFGADGEM-------YAKDVQDLID 248
A + T + N F + G H P +R +G +GE A+++++ I
Sbjct: 173 VTAVSASXTGKPYNSVFGLPLPGFVHLTCPHYWR--YGEEGETEEQFVARLARELEETIQ 230
Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
+ +AGF +E + G GG+I A GY A+ ++K I+DEV GF RTG+ W
Sbjct: 231 REGADTIAGFFAEPVXGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNT-W 289
Query: 309 GFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIA-------EVLTRRNYFNTFGGNPVC 360
G + PD + +K + G P GAV+ PE++ E + + T G+PV
Sbjct: 290 GCVTYDFTPDAIISSKNLTAGFFPXGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVG 349
Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
A + V+ + L N + +ERL + ++ IG+ RG GF +E V D+
Sbjct: 350 CAIALKAIDVVXNEGLAENVRRLAPRFEERLKHIAERPN-IGEYRGIGFXWALEAVKDKA 408
Query: 421 LKTPAKAETLYIMDKMKGIC 440
KTP L + +++ C
Sbjct: 409 SKTPFDG-NLSVSERIANTC 427
>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|B Chain B, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|C Chain C, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|D Chain D, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
Length = 465
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 109/380 (28%), Positives = 176/380 (46%), Gaps = 29/380 (7%)
Query: 85 VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHA 142
V G+ Y+ D +GRRYLDA G+ + G H ++++ Q R H+ ++
Sbjct: 45 VTHGEGPYIVDVHGRRYLDANSGLWNMVAGFDHKGLIEAAKAQYDRFPGYHAFFGRMSDQ 104
Query: 143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN------DIISLRNAYHG 196
+E L P + VF+TNSG+EAN+ + M I++ NAYHG
Sbjct: 105 TVMLSEKLVEVSPFDNGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHG 164
Query: 197 NAAGTMGATAQS-NWKFNVVQTGVHHALNPDPYRGVFGADGEM-------YAKDVQDLID 248
A + T + N F + G H P +R +G +GE A++++D I
Sbjct: 165 VTAVSASMTGKPYNSVFGLPLPGFIHLTCPHYWR--YGEEGETEAQFVARLARELEDTIT 222
Query: 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFW 308
+ +AGF +E + G GG+I A GY A+ ++K I+DEV GF RTG+ W
Sbjct: 223 REGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPMISDEVICGFGRTGNT-W 281
Query: 309 GFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIA-------EVLTRRNYFNTFGGNPVC 360
G + +PD + + + G P+GAV+ P++A E + + T G+PV
Sbjct: 282 GCLTYDFMPDAIISSXNLTAGFFPMGAVILGPDLAKRVEAAVEAIEEFPHGFTASGHPVG 341
Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
A + V+ + L N + + L + D+ IG+ RG GF+ +E V D+
Sbjct: 342 CAIALKAIDVVMNEGLAENVRRLAPRFEAGLKRIADRPN-IGEYRGIGFMWALEAVKDKP 400
Query: 421 LKTPAKAETLYIMDKMKGIC 440
KTP A L + +++ C
Sbjct: 401 TKTPFDA-NLSVSERIANTC 419
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/358 (29%), Positives = 170/358 (47%), Gaps = 23/358 (6%)
Query: 58 PSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCH 117
P++D+I + + + + P+ + GK YL+D GR+Y D I+ V GHCH
Sbjct: 38 PTSDDIFEREYKY---GAHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCH 94
Query: 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177
P +V+++ +Q+ ++ ++ + N+ + ++ E + N V N+G EA E A +
Sbjct: 95 PKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKL 152
Query: 178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRG----VFG 233
AR + I A AAG S + + +P Y G + G
Sbjct: 153 ARKWGYTVKGIQKYKAKIVFAAGNFWGRTLS---------AISSSTDPTSYDGFGPFMPG 203
Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
D Y D+ L +VA F+ E IQG G++ PGYL V + + L IA
Sbjct: 204 FDIIPY-NDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIA 262
Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFN 352
DE+Q G ARTG + + V PDIV + K + G+ P+ AV+ +I + +F+
Sbjct: 263 DEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFS 321
Query: 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL 410
T+GGNP+ A L+V++++ L NA +G L+ L L ++ VRG+G L
Sbjct: 322 TYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD--VVTAVRGKGLL 377
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/344 (30%), Positives = 169/344 (49%), Gaps = 30/344 (8%)
Query: 88 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFA 147
G+ YLFD+ ++YLD GI G+ H I Q+ ++ H++ LY N IA A
Sbjct: 25 GQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIA--A 82
Query: 148 EALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDI-----ISLRNAYHGNAAGTM 202
A L+ VFFTNSGTE+ E A AR Y + I+ ++++HG G +
Sbjct: 83 AAKNLAKASALERVFFTNSGTESIEGAXKTARKYAFNKGVKGGQFIAFKHSFHGRTLGAL 142
Query: 203 GATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS 260
TA ++ F + +GV A D V+ L++ T +
Sbjct: 143 SLTANEKYQKPFKPLISGVKFAKYND-------------ISSVEKLVNEKT----CAIIL 185
Query: 261 ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV 320
ES+QG GGI + A+ K + L IADE+Q G R+G F+ +E ++PDI
Sbjct: 186 ESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGXGRSGK-FFAYEHAQILPDIX 244
Query: 321 TMAKGIGNGIPLGAVVTTPEIA-EVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNN 379
T AK +G G+ +GA V ++A L ++ +T+GGNP+ A +AV ++ +++K+ N
Sbjct: 245 TSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILEN 304
Query: 380 AHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKT 423
+ + YL++ L L +++ +G GF G+ D+ +K
Sbjct: 305 VNKLTPYLEQSLDELINEFDFCKKRKGLGFXQGLSL--DKSVKV 346
>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
(Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
Resolution
Length = 459
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 114/386 (29%), Positives = 182/386 (47%), Gaps = 30/386 (7%)
Query: 67 RKTFLSPSLF---HLYSKPLNVVDGKMQYLF--DENGRRYLDAFGGIATVCCGHCHPYVV 121
R F PS H + N V +F D +G + LDAF G+ V G+ +
Sbjct: 13 RDNFFHPSTHLAQHARGESANRVIKTASGVFIEDRDGTKLLDAFAGLYCVNVGYGRQEIA 72
Query: 122 DSIVNQIKRIQ--HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR 179
++I +Q + + HS V + A A+ + + P N V+F G++ANE + +
Sbjct: 73 EAIADQARELAYYHSYVGHGTEASITLAKXILDRAPKNXSKVYFGLGGSDANETNVKLIW 132
Query: 180 LYTGC------NDIISLRNAYHGNA--AGTMGATAQSNWKFNVVQTGVHHALNPDPYR-- 229
Y IIS YHG+ G++ + KF++ V H P +R
Sbjct: 133 YYNNILGRPEKKKIISRWRGYHGSGLVTGSLTGLELFHKKFDLPVEQVIHTEAPYYFRRE 192
Query: 230 GVFGADGEMYAK---DVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK 286
+ + + A +++ LI+ + +A F+ E I G GGI+ GY A+ + K
Sbjct: 193 DLNQTEEQFVAHCVAELEALIEREGADTIAAFIGEPILGTGGIVPPPAGYWEAIQTVLNK 252
Query: 287 AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA-KGIGNG-IPLGAVVTTPEIAEV 344
L +ADEV GF R G+ F G + +G+ PDI+T+A KG+ + PL + + ++ +V
Sbjct: 253 HDILLVADEVVTGFGRLGTXF-GSDHYGLEPDIITIAXKGLTSAYAPLSGSIVSDKVWKV 311
Query: 345 LTRRNYFN-------TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDK 397
L + N T+ +P+ AAG A LK++ + L +NA VG+YL +
Sbjct: 312 LEQGTDENGPIGHGWTYSAHPIGAAAGVANLKLLDELNLVSNAGEVGAYLNATXAEALSQ 371
Query: 398 YGIIGDVRGRGFLLGVEFVTDRQLKT 423
+ +GDVRG G L VEFV DR +T
Sbjct: 372 HANVGDVRGEGLLCAVEFVKDRDSRT 397
>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|B Chain B, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|C Chain C, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|D Chain D, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|E Chain E, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|F Chain F, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|G Chain G, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|H Chain H, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|I Chain I, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|J Chain J, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|K Chain K, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|L Chain L, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATQ|A Chain A, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|B Chain B, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|C Chain C, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|D Chain D, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|E Chain E, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|F Chain F, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|G Chain G, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|H Chain H, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|I Chain I, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|J Chain J, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|K Chain K, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|L Chain L, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
Length = 456
Score = 138 bits (347), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 118/377 (31%), Positives = 179/377 (47%), Gaps = 21/377 (5%)
Query: 55 YDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCG 114
+ GP + + +R ++ + P+ V D + D +G ++D GIA G
Sbjct: 22 FPGPKSQALAERRSAVVAAGVAS--GVPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVG 79
Query: 115 HCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMPGN-LKVVFFTNSGTEANE 172
P VV ++ H+ + + E L PG+ K NSG EA E
Sbjct: 80 ASDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVE 139
Query: 173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS---NWKFNVVQTGVHHALNPDPYR 229
A+ +ARL TG + +++ +AYHG TM TA++ F V+ P+R
Sbjct: 140 NAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFR 199
Query: 230 G----VFGADGEMYAKDVQDLIDFGTSG-HVAGFLSESIQGVGGIIELAPGYLPAVYKSI 284
+ GA+ AK +I+ G VA + E IQG GG I A G+LPA+ +
Sbjct: 200 EENPEITGAEA---AKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWA 256
Query: 285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV 344
K+ G + IADEVQ+GF RTG F + GVVPDI+TMAKGI G+PL A+ ++ +
Sbjct: 257 KEKGIVFIADEVQSGFCRTGEWF-AVDHEGVVPDIITMAKGIAGGLPLSAITGRADLLDA 315
Query: 345 LTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-----G 399
+ T+GGNPV AA A + +++ L A + +L L +
Sbjct: 316 VHPGGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGS 375
Query: 400 IIGDVRGRGFLLGVEFV 416
++GD+RGRG +L +E V
Sbjct: 376 VVGDIRGRGAMLAIELV 392
>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127)
From Mesorhizobium Loti Maff303099 At 1.55 A Resolution
Length = 459
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 106/357 (29%), Positives = 168/357 (47%), Gaps = 25/357 (7%)
Query: 88 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHAIAD 145
G+ ++D NGR+ +DAF G+ V G+ + D+I Q K + H+ V + A
Sbjct: 40 GEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEASIT 99
Query: 146 FAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC------NDIISLRNAYHGNAA 199
A+ + + P V+F SG++ANE I + Y IIS YHG+
Sbjct: 100 LAKXIIDRAPKGXSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGV 159
Query: 200 GTMGATAQSNW--KFNVVQTGVHHALNPDPYRGVFGADGEMY-----AKDVQDLIDFGTS 252
T T + F++ + V H P +R + E A +++ I
Sbjct: 160 XTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSXSEEQFSQHCADKLEEXILAEGP 219
Query: 253 GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA 312
+A F+ E I G GGI+ GY + +KK L +ADEV GF R G+ F G +
Sbjct: 220 ETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTXF-GSDH 278
Query: 313 HGVVPDIVTMA-KGIGNG-IPLGAVVTTPEIAEVLTRRN-------YFNTFGGNPVCTAA 363
+G+ PD++T+A KG+ + PL V+ + +VL + + + T+ +P+C AA
Sbjct: 279 YGIKPDLITIAXKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAA 338
Query: 364 GHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ 420
G A L++I + L NA G+Y + L + +G+VRG G L VEFV D+
Sbjct: 339 GVANLELIDEXDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGXLAAVEFVADKD 395
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/347 (29%), Positives = 166/347 (47%), Gaps = 28/347 (8%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
P+ + GK +++D RRY D ++V GHCHP ++++++NQ K++ + + +
Sbjct: 29 PVVLKRGKGVFVYDIEDRRYYDFLSAYSSVNQGHCHPDILNAMINQAKKLTICSRAFFSD 88
Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNA 193
++ E + + G KV+ N+G EA+E A + R + II N
Sbjct: 89 SLG-VCERYLTNLFGYDKVLMM-NTGAEASETAYKLCRKWGYEVKKIPENSAKIIVCNNN 146
Query: 194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG 253
+ G G + A+ K N P+ + V D E K++QD
Sbjct: 147 FSGRTLGCVSASTDKKCKNN------FGPFVPN-FLKVPYDDLEALEKELQD-------P 192
Query: 254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH 313
+V F+ E +QG G+I + Y P V KK L +ADEVQ G RTG +
Sbjct: 193 NVCAFIVEPVQGEAGVIVPSDSYFPGVASLCKKYNVLFVADEVQTGLGRTGKLLCTHH-Y 251
Query: 314 GVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ 372
GV PD++ + K + G P+ A++ ++ VL + +T+GGNP+ A LKV+
Sbjct: 252 GVKPDVILLGKALSGGHYPISAILANDDVMLVLKPGEHGSTYGGNPLAAAICVEALKVLI 311
Query: 373 KDKLQNNAHVVGS-YLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
+KL NA +G+ +L+ LKD ++ +VRG+G L +EF D
Sbjct: 312 NEKLCENADKLGAPFLQNLKEQLKDS-KVVREVRGKGLLCAIEFKND 357
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 169/358 (47%), Gaps = 23/358 (6%)
Query: 58 PSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCH 117
P++D+I + + + + P+ + GK YL+D GR+Y D I+ V GHCH
Sbjct: 38 PTSDDIFEREYKY---GAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCH 94
Query: 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177
P +V+++ +Q+ ++ ++ + N+ + ++ E + N V N+G EA E A +
Sbjct: 95 PKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKL 152
Query: 178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRG----VFG 233
AR + I A AAG S + + +P Y G + G
Sbjct: 153 ARKWGYTVKGIQKYKAKIVFAAGNFWGRTLS---------AISSSTDPTSYDGFGPFMPG 203
Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
D Y D+ L +VA F+ E IQG G++ PGYL V + + L IA
Sbjct: 204 FDIIPY-NDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIA 262
Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFN 352
DE+Q G ARTG + + V PDIV + K + G+ P+ AV+ +I + + +
Sbjct: 263 DEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGS 321
Query: 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL 410
T+GGNP+ A L+V++++ L NA +G L+ L L ++ VRG+G L
Sbjct: 322 TYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD--VVTAVRGKGLL 377
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 134 bits (338), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 169/358 (47%), Gaps = 23/358 (6%)
Query: 58 PSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCH 117
P++D+I + + + + L P+ + GK YL+D GR+Y D + V GHCH
Sbjct: 1 PTSDDIFEREYKYGAHNYHPL---PVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCH 57
Query: 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177
P +V+++ +Q+ ++ ++ + N+ + ++ E + N V N+G EA E A +
Sbjct: 58 PKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKL 115
Query: 178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRG----VFG 233
AR + I A AAG S + + +P Y G + G
Sbjct: 116 ARKWGYTVKGIQKYKAKIVFAAGNFWGRTLS---------AISSSTDPTSYDGFGPFMPG 166
Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
D Y D+ L +VA F+ E IQG G++ PGYL V + + L IA
Sbjct: 167 FDIIPY-NDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIA 225
Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFN 352
DE+Q G ARTG + + V PDIV + K + G+ P+ AV+ +I + + +
Sbjct: 226 DEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGS 284
Query: 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL 410
T+GGNP+ A L+V++++ L NA +G L+ L L ++ VRG+G L
Sbjct: 285 TYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD--VVTAVRGKGLL 340
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 169/358 (47%), Gaps = 23/358 (6%)
Query: 58 PSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCH 117
P++D+I + + + + L P+ + GK YL+D GR+Y D + V GHCH
Sbjct: 38 PTSDDIFEREYKYGAHNYHPL---PVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCH 94
Query: 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177
P +V+++ +Q+ ++ ++ + N+ + ++ E + N V N+G EA E A +
Sbjct: 95 PKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKL 152
Query: 178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRG----VFG 233
AR + I A AAG S + + +P Y G + G
Sbjct: 153 ARKWGYTVKGIQKYKAKIVFAAGNFWGRTLS---------AISSSTDPTSYDGFGPFMPG 203
Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
D Y D+ L +VA F+ E IQG G++ PGYL V + + L IA
Sbjct: 204 FDIIPY-NDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIA 262
Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFN 352
DE+Q G ARTG + + V PDIV + K + G+ P+ AV+ +I + + +
Sbjct: 263 DEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGS 321
Query: 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL 410
T+GGNP+ A L+V++++ L NA +G L+ L L ++ VRG+G L
Sbjct: 322 TYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD--VVTAVRGKGLL 377
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 156/347 (44%), Gaps = 34/347 (9%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
P+ + K +++D N +RY D ++V GHCHP ++++++NQ K + + + +
Sbjct: 48 PVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSV 107
Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNA 193
+ E + + G KV+ N+G EANE A + R + I+ +N
Sbjct: 108 PLG-ICERYLTNLLGYDKVLMM-NTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNN 165
Query: 194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK----DVQDLIDF 249
+ G G + A+ N FG ++K D++ L +
Sbjct: 166 FSGRTLGCISASTTKKCTSN------------------FGPFAPQFSKVPYDDLEALEEE 207
Query: 250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
+V F+ E IQG G+I + YL VY KK L +ADEVQ G RTG
Sbjct: 208 LKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK-LLC 266
Query: 310 FEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL 368
+ V PD++ + K + G P+ AV+ +I V+ + +T+GGNP+ + L
Sbjct: 267 VHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEAL 326
Query: 369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
V+ +KL NA +G E L I+ DVRG+G L +EF
Sbjct: 327 NVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEF 373
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 131 bits (329), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 101/349 (28%), Positives = 172/349 (49%), Gaps = 25/349 (7%)
Query: 92 YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEAL 150
Y+ E+GRR +D G+ G+ +VD++ +Q + +++ Y+ A AE +
Sbjct: 47 YVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWYMATSPAARLAEKI 106
Query: 151 ASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC------NDIISLRNAYHGNAAGTMGA 204
A+ PG+L +FFT G+ A + A+ + Y II + YHG+ A T
Sbjct: 107 ATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAAC 166
Query: 205 TAQS-NW-KFNVVQTGVHHALNPDPYRGVFGADGEMYAKDV----QDLIDFGTSGHVAGF 258
T ++ NW F++ Q + +P+P R E + D+ +D I+ +A F
Sbjct: 167 TGRTGNWPNFDIAQDRISFLSSPNP-RHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAF 225
Query: 259 LSESIQGVGGIIELAPGYLPAVYKSI-KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVP 317
L+E I GG+I GY A +K+I +K L I+DEV GF R G F + GVVP
Sbjct: 226 LAEPILASGGVIIPPAGY-HARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVP 284
Query: 318 DIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRN----YFN---TFGGNPVCTAAGHAVLK 369
DI+T AKG+ +G +PLG + + + ++ N +F T+ PV AA A ++
Sbjct: 285 DIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIE 344
Query: 370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
+++++ + + A + Y L +L+D G + + R G + V+ + D
Sbjct: 345 LMEREGIVDQAREMADYFAAALASLRDLPG-VAETRSVGLVGCVQCLLD 392
>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6R|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6T|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6U|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A6U|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A72|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4AH3|A Chain A, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|B Chain B, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|C Chain C, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|D Chain D, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
Length = 459
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 176/378 (46%), Gaps = 29/378 (7%)
Query: 88 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTVLYLNH-AIAD 145
G+ YL+D G + +D G+ V G+ ++ Q++ + ++T H A+ +
Sbjct: 39 GEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVE 98
Query: 146 FAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN------DIISLRNAYHGNAA 199
+ LA P VF+TNSG+E+ + I M R Y +I N YHG+
Sbjct: 99 LSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTI 158
Query: 200 G--TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGAD------GEMYAKDVQDLIDFGT 251
G ++G + + ++ G+ H P Y+ G D G + A+ +++ I
Sbjct: 159 GGASLGGMKYMHEQGDLPIPGMAHIEQPWWYK--HGKDMTPDEFGVVAARWLEEKILEIG 216
Query: 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE 311
+ VA F+ E IQG GG+I Y P + + +K L +ADEV GF RTG F G +
Sbjct: 217 ADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWF-GHQ 275
Query: 312 AHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFN---TFGGNPVCTAAGHAV 367
G PD+ T AKG+ +G +P+GAV +AE L FN T+ G+PVC A HA
Sbjct: 276 HFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHAN 335
Query: 368 LKVIQKDKL-QNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAK 426
+ ++ + + Q +G Y+++R ++ + DVRG G + V K AK
Sbjct: 336 VAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLV-----KNKAK 390
Query: 427 AETLYIMDKMKGICALFF 444
E ++ +C F
Sbjct: 391 RELFPDFGEIGTLCRDIF 408
>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
Length = 392
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 163/347 (46%), Gaps = 35/347 (10%)
Query: 82 PLNVVDGKMQ--YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL 139
PL +V K + ++ D G RY+D + V GH HP +++++++Q R+ ++ +
Sbjct: 17 PLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFH 76
Query: 140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT--------GCNDIISLR 191
+ + + E +A N ++V N+G EA E AI AR + +II
Sbjct: 77 SDQLGPWYEKVAKLT--NKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCE 134
Query: 192 NAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF 249
+ +HG G + ++ +K F + G+ PY G++ A +
Sbjct: 135 DNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVI----PY-------GDLEA------LKA 177
Query: 250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
+ + A F+ E IQG GI G+L + KK L +ADE+Q G RTG F
Sbjct: 178 AITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVF-A 236
Query: 310 FEAHGVVPDIVTMAKGIGNGI-PLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL 368
+ V PD+ + +G G+ P+ +I V ++ +TFGGNP+ A A L
Sbjct: 237 CDWDNVTPDMYILGXALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAAL 296
Query: 369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
+V++++KL + +G L +L + + +I +VRG+G +G+E
Sbjct: 297 EVLEEEKLTERSLQLGEKLVGQLKEIDNP--MITEVRGKGLFIGIEL 341
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 166/369 (44%), Gaps = 26/369 (7%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
PL + G + D NG+ Y D F + GH + D+I Q+ +I HST+L + +
Sbjct: 27 PLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLGMTN 86
Query: 142 AIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC------NDIISLRNAY 194
A AE L P L VF+++SG EA E+A+ MA Y I+++N Y
Sbjct: 87 VPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGY 146
Query: 195 HGNAAG--TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS 252
HG+ G ++G+ + + + + A P YR G E + +++L
Sbjct: 147 HGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQXLRELAQLLEE 206
Query: 253 GH--VAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
H +A ES +QG G+I + GYL V + L I DEV GF RTG F
Sbjct: 207 HHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMF-A 265
Query: 310 FEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL-----TRRNYF--NTFGGNPVCT 361
E V PD++ KGI G +P+ T +I + + +F +++ GN +
Sbjct: 266 CEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGC 325
Query: 362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGI--IGDVRGRGFLLGVEFVTDR 419
A L + + +N V K+ L+D + + +GD+R GF+ G E V +
Sbjct: 326 AVALENLALFES---ENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSK 382
Query: 420 QLKTPAKAE 428
+ K P A+
Sbjct: 383 ETKEPYPAD 391
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 121 bits (304), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 166/369 (44%), Gaps = 26/369 (7%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
PL + G + D NG+ Y D F + GH + D+I Q+ +I HST+L + +
Sbjct: 27 PLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLGMTN 86
Query: 142 AIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC------NDIISLRNAY 194
A AE L P L VF+++SG EA E+A+ MA Y I+++N Y
Sbjct: 87 VPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGY 146
Query: 195 HGNAAG--TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS 252
HG+ G ++G+ + + + + A P YR G E + +++L
Sbjct: 147 HGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEE 206
Query: 253 GH--VAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
H +A ES +QG G+I + GYL V + L I DEV GF RTG F
Sbjct: 207 HHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMF-A 265
Query: 310 FEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVL-----TRRNYF--NTFGGNPVCT 361
E V PD++ KGI G +P+ T +I + + +F +++ GN +
Sbjct: 266 CEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGC 325
Query: 362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGI--IGDVRGRGFLLGVEFVTDR 419
A L + + +N V K+ L+D + + +GD+R GF+ G E V +
Sbjct: 326 AVALENLALFES---ENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSK 382
Query: 420 QLKTPAKAE 428
+ K P A+
Sbjct: 383 ETKEPYPAD 391
>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate
Aminotransferase
Length = 449
Score = 121 bits (304), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 162/352 (46%), Gaps = 26/352 (7%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
P +V + +L D+ GR+ D+ G+ T GH + +++ Q+ + +S H
Sbjct: 33 PRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGH 92
Query: 142 AIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAY 194
++ AE + PGNL VFFT+SG+E A+ M R Y +I Y
Sbjct: 93 PLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGY 152
Query: 195 HG-NAAGTMGATAQSNWKF-----NVVQTGVHHALNPDPY-RGVFGADGEMYAKDVQDLI 247
HG N AGT N K V H L + Y RG+ G A ++ LI
Sbjct: 153 HGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLI 212
Query: 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF 307
+ + ++A E + G G++ GYL + + L + DEV GF RTGS F
Sbjct: 213 ELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMF 272
Query: 308 WGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR---------NYFNTFGGN 357
G ++ GV PD++ +AK + NG IP+GAV+ + EI + + + T+ +
Sbjct: 273 -GADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAH 331
Query: 358 PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGF 409
PV AAG A L ++QK+ L + V + ++ L +K +I D+R G
Sbjct: 332 PVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVI-DIRNFGL 382
>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|B Chain B, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|C Chain C, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|D Chain D, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
Length = 430
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 168/353 (47%), Gaps = 29/353 (8%)
Query: 74 SLFHLYSKPLNV-VDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ 132
++F+ SKP V V G+ +L+D+ GRRYLD G GH V + + Q R+
Sbjct: 3 NVFYRSSKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARL- 61
Query: 133 HSTVLYLNHAIADFAEALASKMPGNLKVVFF----TNSGTEANELAIMMARLY------T 182
++ + +D E A ++ + + F + G+EA E A+ +AR Y
Sbjct: 62 --PFVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEP 119
Query: 183 GCNDIISLRNAYHGNAAGTMGAT---AQSNWKFNVVQTGVHHAL-NPDPYRGVFGADGEM 238
G +I+ +YHG + G++ A+ A+ +++ L PDP R +G
Sbjct: 120 GRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPAR-----NGAE 174
Query: 239 YAKDVQDLIDFGTSGHVAGFLSESIQGVG-GIIELAPGYLPAVYKSIKKAGGLCIADEVQ 297
A+ ++ L++ VA F++E + G + APGY V +AG + IADEV
Sbjct: 175 DAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVM 234
Query: 298 AGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAE-VLTRRNYFN--- 352
+G R GS GV PDI + KG+ G PL ++ P++ E V+ F
Sbjct: 235 SGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGF 294
Query: 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR 405
T+ G+PV AAG +VL +++++ L A G+ L L AL+ ++ + VR
Sbjct: 295 TYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVR 347
>pdb|1DTY|A Chain A, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor
Length = 429
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 161/353 (45%), Gaps = 35/353 (9%)
Query: 85 VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIA 144
VV + L +GRR +D G+ HP + ++ +QI + H + HA A
Sbjct: 29 VVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGEITHAPA 88
Query: 145 -DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC-----NDIISLRNAYHGNA 198
+ L + P L+ VF +SG+ A E+A+ MA Y + ++ RN YHG+
Sbjct: 89 IELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWDAKGEARDRFLTFRNGYHGDT 148
Query: 199 AGTMGATAQSN-----WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--T 251
G M N WK + + + P P + DGE D +D++ F
Sbjct: 149 FGAMSVCDPDNSMHSLWKGYLPE----NLFAPAPQSRM---DGEW---DERDMVGFARLM 198
Query: 252 SGH---VAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF 307
+ H +A + E I QG GG+ P +L + K + G L IADE+ GF RTG F
Sbjct: 199 AAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF 258
Query: 308 WGFEAHGVVPDIVTMAKGI-GNGIPLGAVVTTPEIAEVLTRRN-----YFNTFGGNPVCT 361
E + PDI+ + K + G + L A +TT E+AE ++ + TF GNP+
Sbjct: 259 -ACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISDGEAGCFMHGPTFMGNPLAC 317
Query: 362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414
AA +A L +++ Q + L+E+L +D ++ DVR G + VE
Sbjct: 318 AAANASLAILESGDWQQQVADIEVQLREQLAPARDAE-MVADVRVLGAIGVVE 369
>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1MLY|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLY|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLZ|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin.
pdb|1MLZ|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin
Length = 429
Score = 111 bits (277), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 172/382 (45%), Gaps = 40/382 (10%)
Query: 59 SADEILAKRKTFLSPSLFHLYSKPLNV---VDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
+ D++ ++ L P + + PL V V + L +GRR +D G+
Sbjct: 2 TTDDLAFDQRHILHP--YTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGY 59
Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELA 174
HP + ++ +QI + H + HA A + L + P L+ VF +SG+ A E+A
Sbjct: 60 NHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVA 119
Query: 175 IMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSN-----WKFNVVQTGVHHALN 224
+ MA Y ++ RN YHG+ G M N WK + + +
Sbjct: 120 MKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPE----NLFA 175
Query: 225 PDPYRGVFGADGEMYAKDVQDLIDFG--TSGH---VAGFLSESI-QGVGGIIELAPGYLP 278
P P + DGE D +D++ F + H +A + E I QG GG+ P +L
Sbjct: 176 PAPQSRM---DGEW---DERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLK 229
Query: 279 AVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPLGAVVT 337
+ K + G L IADE+ GF RTG F E + PDI+ + K + G + L A +T
Sbjct: 230 RIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCLGKALTGGTMTLSATLT 288
Query: 338 TPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT 392
T E+AE ++ + TF GNP+ AA +A L +++ Q + L+E+L
Sbjct: 289 TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLA 348
Query: 393 ALKDKYGIIGDVRGRGFLLGVE 414
+D ++ DVR G + VE
Sbjct: 349 PARDAE-MVADVRVLGAIGVVE 369
>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1MGV|B Chain B, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 172/382 (45%), Gaps = 40/382 (10%)
Query: 59 SADEILAKRKTFLSPSLFHLYSKPLNV---VDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
+ D++ ++ L P + + PL V V + L +GRR +D G+
Sbjct: 2 TTDDLAFDQRHILHP--YTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGY 59
Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELA 174
HP + ++ +QI + H + HA A + L + P L+ VF +SG+ A E+A
Sbjct: 60 NHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVA 119
Query: 175 IMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSN-----WKFNVVQTGVHHALN 224
+ MA Y ++ RN YHG+ G M N WK + + +
Sbjct: 120 MKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPE----NLFA 175
Query: 225 PDPYRGVFGADGEMYAKDVQDLIDFG--TSGH---VAGFLSESI-QGVGGIIELAPGYLP 278
P P + DGE D +D++ F + H +A + E I QG GG+ P +L
Sbjct: 176 PAPQSRM---DGEW---DERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLK 229
Query: 279 AVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPLGAVVT 337
+ K + G L IADE+ GF RTG F E + PDI+ + K + G + L A +T
Sbjct: 230 RIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCLGKALTGGTMTLSATLT 288
Query: 338 TPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT 392
T E+AE ++ + TF GNP+ AA +A L +++ Q + L+E+L
Sbjct: 289 TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLA 348
Query: 393 ALKDKYGIIGDVRGRGFLLGVE 414
+D ++ DVR G + VE
Sbjct: 349 PARDAE-MVADVRVLGAIGVVE 369
>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
pdb|3L44|B Chain B, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
Length = 434
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 148/332 (44%), Gaps = 33/332 (9%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-IQHSTVLYLN 140
P+ GK Y +D +G +Y+D + GH HP++ +I + + + T L
Sbjct: 38 PIAXERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGTPTALE 97
Query: 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN--- 197
FA+ L P L V F NSGTEA I +AR YTG I YHG+
Sbjct: 98 ---VKFAKXLKEAXPA-LDKVRFVNSGTEAVXTTIRVARAYTGRTKIXKFAGCYHGHSDL 153
Query: 198 ---AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH 254
AAG+ +T + V Q+ + P+ V + +++ +D GH
Sbjct: 154 VLVAAGSGPSTLGTPDSAGVPQSIAQEVITV-PFNNV---------ETLKEALD--KWGH 201
Query: 255 -VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG--FARTGSHFWGFE 311
VA L E I G GI+E PG+L V + + +AG L I DEV F G+ +
Sbjct: 202 EVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFXYGGAQ----D 257
Query: 312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV---LTRRNYFNTFGGNPVCTAAGHAVL 368
GV PD+ + IG G+P+GA EI E L T GNP A+G A L
Sbjct: 258 LLGVTPDLTALGXVIGGGLPIGAYGGKKEIXEQVAPLGPAYQAGTXAGNPASXASGIACL 317
Query: 369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGI 400
+V+Q++ L +G+ L++ + K+ I
Sbjct: 318 EVLQQEGLYEKLDELGATLEKGILEQAAKHNI 349
>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S08|B Chain B, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 171/382 (44%), Gaps = 40/382 (10%)
Query: 59 SADEILAKRKTFLSPSLFHLYSKPLNV---VDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
+ D++ ++ L P + + PL V V + L +GRR +D G+
Sbjct: 2 TTDDLAFDQRHILHP--YTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGY 59
Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELA 174
HP + ++ +QI + H + HA A + L + P L+ VF +SG+ A E+A
Sbjct: 60 NHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVA 119
Query: 175 IMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSN-----WKFNVVQTGVHHALN 224
+ MA Y ++ RN YHGN G M N WK + + +
Sbjct: 120 MKMALQYWQAKGEARQRFLTFRNGYHGNTFGAMSVCDPDNSMHSLWKGYLPE----NLFA 175
Query: 225 PDPYRGVFGADGEMYAKDVQDLIDFG--TSGH---VAGFLSESI-QGVGGIIELAPGYLP 278
P P + DGE D +D++ F + H +A + E I QG GG+ P +L
Sbjct: 176 PAPQSRM---DGEW---DERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLK 229
Query: 279 AVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPLGAVVT 337
+ K + G L IADE+ GF RTG F E + PDI+ + + G + L A +T
Sbjct: 230 RIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCLGXALTGGTMTLSATLT 288
Query: 338 TPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT 392
T E+AE ++ + TF GNP+ AA +A L +++ Q + L+E+L
Sbjct: 289 TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLA 348
Query: 393 ALKDKYGIIGDVRGRGFLLGVE 414
+D ++ DVR G + VE
Sbjct: 349 PARDAE-MVADVRVLGAIGVVE 369
>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S0A|B Chain B, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 171/382 (44%), Gaps = 40/382 (10%)
Query: 59 SADEILAKRKTFLSPSLFHLYSKPLNV---VDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
+ D++ ++ L P F + PL V V + L +GRR +D G+
Sbjct: 2 TTDDLAFDQRHILHP--FTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGY 59
Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELA 174
HP + ++ +QI + H + HA A + L + P L+ VF +SG+ A E+A
Sbjct: 60 NHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVA 119
Query: 175 IMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSN-----WKFNVVQTGVHHALN 224
+ MA Y ++ RN YHG+ G M N WK + + +
Sbjct: 120 MKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPE----NLFA 175
Query: 225 PDPYRGVFGADGEMYAKDVQDLIDFG--TSGH---VAGFLSESI-QGVGGIIELAPGYLP 278
P P + DGE D +D++ F + H +A + E I QG GG+ P +L
Sbjct: 176 PAPQSRM---DGEW---DERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLK 229
Query: 279 AVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPLGAVVT 337
+ K + G L IADE+ GF RTG F E + PDI+ + + G + L A +T
Sbjct: 230 RIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCLGXALTGGTMTLSATLT 288
Query: 338 TPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT 392
T E+AE ++ + TF GNP+ AA +A L +++ Q + L+E+L
Sbjct: 289 TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLA 348
Query: 393 ALKDKYGIIGDVRGRGFLLGVE 414
+D ++ DVR G + VE
Sbjct: 349 PARDAE-MVADVRVLGAIGVVE 369
>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1S07|B Chain B, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 107/382 (28%), Positives = 171/382 (44%), Gaps = 40/382 (10%)
Query: 59 SADEILAKRKTFLSPSLFHLYSKPLNV---VDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
+ D++ ++ L P + + PL V V + L +GRR +D G+
Sbjct: 2 TTDDLAFDQRHILHP--YTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGY 59
Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELA 174
HP + ++ +QI + H + HA A + L + P L+ VF +SG+ A E+A
Sbjct: 60 NHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVA 119
Query: 175 IMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSN-----WKFNVVQTGVHHALN 224
+ MA Y ++ RN YHG+ G M N WK + + +
Sbjct: 120 MKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPE----NLFA 175
Query: 225 PDPYRGVFGADGEMYAKDVQDLIDFG--TSGH---VAGFLSESI-QGVGGIIELAPGYLP 278
P P + DGE D +D++ F + H +A + E I QG GG+ P +L
Sbjct: 176 PAPQSRM---DGEW---DERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLK 229
Query: 279 AVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPLGAVVT 337
+ K + G L IADE+ GF TG F E + PDI+ + K + G + L A +T
Sbjct: 230 RIRKICDREGILLIADEIATGFGATGKLF-ACEHAEIAPDILCLGKALTGGTMTLSATLT 288
Query: 338 TPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT 392
T E+AE ++ + TF GNP+ AA +A L +++ Q + L+E+L
Sbjct: 289 TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLA 348
Query: 393 ALKDKYGIIGDVRGRGFLLGVE 414
+D ++ DVR G + VE
Sbjct: 349 PARDAE-MVADVRVLGAIGVVE 369
>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S06|B Chain B, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 106/382 (27%), Positives = 171/382 (44%), Gaps = 40/382 (10%)
Query: 59 SADEILAKRKTFLSPSLFHLYSKPLNV---VDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
+ D++ ++ L P + + PL V V + L +GRR +D G+
Sbjct: 2 TTDDLAFDQRHILHP--YTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGY 59
Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELA 174
HP + ++ +QI + H + HA A + L + P L+ VF +SG+ A E+A
Sbjct: 60 NHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVA 119
Query: 175 IMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSN-----WKFNVVQTGVHHALN 224
+ MA Y ++ RN YHG+ G M N WK + + +
Sbjct: 120 MKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPE----NLFA 175
Query: 225 PDPYRGVFGADGEMYAKDVQDLIDFG--TSGH---VAGFLSESI-QGVGGIIELAPGYLP 278
P P + DGE D +D++ F + H +A + E I QG GG+ P +L
Sbjct: 176 PAPQSRM---DGEW---DERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLK 229
Query: 279 AVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPLGAVVT 337
+ K + G L IADE+ GF +TG F E + PDI+ + + G + L A +T
Sbjct: 230 RIRKICDREGILLIADEIATGFGKTGKLF-ACEHAEIAPDILCLGXALTGGTMTLSATLT 288
Query: 338 TPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT 392
T E+AE ++ + TF GNP+ AA +A L +++ Q + L+E+L
Sbjct: 289 TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLA 348
Query: 393 ALKDKYGIIGDVRGRGFLLGVE 414
+D ++ DVR G + VE
Sbjct: 349 PARDAE-MVADVRVLGAIGVVE 369
>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S09|B Chain B, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 106/382 (27%), Positives = 171/382 (44%), Gaps = 40/382 (10%)
Query: 59 SADEILAKRKTFLSPSLFHLYSKPLNV---VDGKMQYLFDENGRRYLDAFGGIATVCCGH 115
+ D++ ++ L P + + PL V V + L +GRR +D G+
Sbjct: 2 TTDDLAFDQRHILHP--YTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGY 59
Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELA 174
HP + ++ +QI + H + HA A + L + P L+ VF +SG+ A E+A
Sbjct: 60 NHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVA 119
Query: 175 IMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSN-----WKFNVVQTGVHHALN 224
+ MA Y ++ RN +HG+ G M N WK + + +
Sbjct: 120 MKMALQYWQAKGEARQRFLTFRNGFHGDTFGAMSVCDPDNSMHSLWKGYLPE----NLFA 175
Query: 225 PDPYRGVFGADGEMYAKDVQDLIDFG--TSGH---VAGFLSESI-QGVGGIIELAPGYLP 278
P P + DGE D +D++ F + H +A + E I QG GG+ P +L
Sbjct: 176 PAPQSRM---DGEW---DERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLK 229
Query: 279 AVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPLGAVVT 337
+ K + G L IADE+ GF RTG F E + PDI+ + + G + L A +T
Sbjct: 230 RIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCLGXALTGGTMTLSATLT 288
Query: 338 TPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT 392
T E+AE ++ + TF GNP+ AA +A L +++ Q + L+E+L
Sbjct: 289 TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLA 348
Query: 393 ALKDKYGIIGDVRGRGFLLGVE 414
+D ++ DVR G + VE
Sbjct: 349 PARDAE-MVADVRVLGAIGVVE 369
>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Aeropyrum Pernix
pdb|2ZSL|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix
pdb|2ZSM|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|C Chain C, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
Length = 434
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 143/314 (45%), Gaps = 29/314 (9%)
Query: 72 SPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI 131
SP + P V G+ YL+ +G R +D + GH HP V++++ + R
Sbjct: 29 SPVRAAVKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALAR- 87
Query: 132 QHSTVLYLNHAIADFAEALASKMPGNLK---VVFFTNSGTEANELAIMMARLYTGCNDII 188
+L A + LA K+ G +K ++ F NSGTEA AI +AR YTG + I+
Sbjct: 88 -----GWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYTGRDLIL 142
Query: 189 SLRNAYHGNAAGTMGATAQSNWKFNV-VQTGVHHALNP----DPYRGVFGADGEMYAKDV 243
YHG+ + A + + V GV A+ PY D E +
Sbjct: 143 KFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYN-----DVEALERVF 197
Query: 244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART 303
+ D +AG + E + G+I +L A+ + +++G L I DEV GF
Sbjct: 198 AEYGD-----RIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLG 252
Query: 304 GSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR-NYFN--TFGGNPVC 360
G+ + DI+ + K IG G P+GAV + E+ +LT + FN TF +P+
Sbjct: 253 LEGAQGY--FNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPIT 310
Query: 361 TAAGHAVLKVIQKD 374
AAG A LK ++++
Sbjct: 311 MAAGLATLKALEEE 324
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 99/365 (27%), Positives = 158/365 (43%), Gaps = 38/365 (10%)
Query: 54 PYDGPSADEILAKRKTFL-----SP--SLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFG 106
P+ +DEI A + + SP + + +P+ K Y +D +G RY+D G
Sbjct: 5 PFKTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVG 64
Query: 107 GIATVCCGHCHPYVVDSI-VNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTN 165
CGH HP V++++ V K L + +A E + +P ++++V F N
Sbjct: 65 TWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLA---EMVNDAVP-SIEMVRFVN 120
Query: 166 SGTEANELAIMMARLYTGCNDIISLRNAYHGNA------AGTMGATAQSNWKFNVVQTGV 219
SGTEA + + R YTG + II YHG+A AG+ AT V +
Sbjct: 121 SGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTT 180
Query: 220 HHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPA 279
+ L PY + ++A++ G +AG + E I G G I G+L
Sbjct: 181 ANTLT-TPYNDLEAVKA-LFAEN---------PGEIAGVILEPIVGNSGFIVPDAGFLEG 229
Query: 280 VYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVT 337
+ + + L + DEV GF A G E GV PD+ T+ K IG G+P+GA
Sbjct: 230 LREITLEHDALLVFDEVMTGFRIAYGGVQ----EKFGVTPDLTTLGKIIGGGLPVGAYGG 285
Query: 338 TPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTAL 394
EI +++ T GNP+ AG L+++++ + L + L A+
Sbjct: 286 KREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAI 345
Query: 395 KDKYG 399
+ G
Sbjct: 346 AQETG 350
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 99/365 (27%), Positives = 158/365 (43%), Gaps = 38/365 (10%)
Query: 54 PYDGPSADEILAKRKTFL-----SP--SLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFG 106
P+ +DEI A + + SP + + +P+ K Y +D +G RY+D G
Sbjct: 5 PFKTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVG 64
Query: 107 GIATVCCGHCHPYVVDSI-VNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTN 165
CGH HP V++++ V K L + +A E + +P ++++V F N
Sbjct: 65 TWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLA---EMVNDAVP-SIEMVRFVN 120
Query: 166 SGTEANELAIMMARLYTGCNDIISLRNAYHGNA------AGTMGATAQSNWKFNVVQTGV 219
SGTEA + + R YTG + II YHG+A AG+ AT V +
Sbjct: 121 SGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTT 180
Query: 220 HHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPA 279
+ L PY + ++A++ G +AG + E I G G I G+L
Sbjct: 181 ANTLT-TPYNDLEAVKA-LFAEN---------PGEIAGVILEPIVGNSGFIVPDAGFLEG 229
Query: 280 VYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVT 337
+ + + L + DEV GF A G E GV PD+ T+ K IG G+P+GA
Sbjct: 230 LREITLEHDALLVFDEVMTGFRIAYGGVQ----EKFGVTPDLTTLGKIIGGGLPVGAYGG 285
Query: 338 TPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTAL 394
EI +++ T GNP+ AG L+++++ + L + L A+
Sbjct: 286 KREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAI 345
Query: 395 KDKYG 399
+ G
Sbjct: 346 AQETG 350
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 139/311 (44%), Gaps = 44/311 (14%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
P +V G+ Y++D +G RYLD + GH HP V+ + ++R
Sbjct: 35 PPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLERG------LTFG 88
Query: 142 AIADFAEALASKMPGN---LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA 198
A + ALA K+ + +V F NSGTEA A+ +AR YTG I+ R YHG+A
Sbjct: 89 APSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHA 148
Query: 199 AG----------TMGATAQSNWKFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247
G T+G + + + T V +P+ R V GE
Sbjct: 149 DGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGE---------- 198
Query: 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF 307
+A + E + G G++ +L A++++ K G L IADEV GF F
Sbjct: 199 ------EIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLA---F 248
Query: 308 WG-FEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCTAA 363
G E G+ PD+VT+ K +G G+P A EI E + T GNP+ AA
Sbjct: 249 GGATELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAA 308
Query: 364 GHAVLKVIQKD 374
G A L++++++
Sbjct: 309 GLATLELLEEN 319
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 142/323 (43%), Gaps = 31/323 (9%)
Query: 89 KMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSI-VNQIKRIQHSTVLYLNHAIADFA 147
K Y +D +G RY+D G CGH HP V++++ V K L + +A
Sbjct: 42 KDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLA--- 98
Query: 148 EALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA------AGT 201
E + +P ++++V F NSGTEA + + R YTG + II YHG+A AG+
Sbjct: 99 EMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGS 157
Query: 202 MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE 261
AT V + + L PY + ++A++ G +AG + E
Sbjct: 158 GVATLGLPSSPGVPKKTTANTLT-TPYNDLEAVKA-LFAEN---------PGEIAGVILE 206
Query: 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHGVVPDI 319
I G G I G+L + + + L + DEV GF A G E GV PD+
Sbjct: 207 PIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQ----EKFGVTPDL 262
Query: 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVIQKDKL 376
T+ K IG G+P+GA EI +++ T GNP+ AG L+++++
Sbjct: 263 TTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGT 322
Query: 377 QNNAHVVGSYLKERLTALKDKYG 399
+ L + L A+ + G
Sbjct: 323 YEYLDQITKRLSDGLLAIAQETG 345
>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version
pdb|3FQA|B Chain B, Gabaculien Complex Of Gabaculine Resistant Gsam Version
Length = 427
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 142/323 (43%), Gaps = 31/323 (9%)
Query: 89 KMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSI-VNQIKRIQHSTVLYLNHAIADFA 147
K Y +D +G RY+D G CGH HP V++++ V K L + +A
Sbjct: 42 KDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLA--- 98
Query: 148 EALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA------AGT 201
E + +P ++++V F NSGTEA + + R YTG + II YHG+A AG+
Sbjct: 99 EMVNDAVP-SIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGS 157
Query: 202 MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE 261
AT V + + L PY + ++A++ G +AG + E
Sbjct: 158 GVATLGLPSSPGVPKKTTANTLT-TPYNDLEAVKA-LFAEN---------PGEIAGVILE 206
Query: 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHGVVPDI 319
I G G I G+L + + + L + DEV GF A G E GV PD+
Sbjct: 207 PIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQ----EKFGVTPDL 262
Query: 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVIQKDKL 376
T+ K IG G+P+GA EI +++ T GNP+ AG L+++++
Sbjct: 263 TTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGT 322
Query: 377 QNNAHVVGSYLKERLTALKDKYG 399
+ L + L A+ + G
Sbjct: 323 YEYLDQITKRLSDGLLAIAQETG 345
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 142/323 (43%), Gaps = 31/323 (9%)
Query: 89 KMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSI-VNQIKRIQHSTVLYLNHAIADFA 147
K Y +D +G RY+D G CGH HP V++++ V K L + +A
Sbjct: 42 KDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLA--- 98
Query: 148 EALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA------AGT 201
E + +P ++++V F NSGTEA + + R YTG + II YHG+A AG+
Sbjct: 99 EMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGS 157
Query: 202 MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE 261
AT V + + L PY + ++A++ G +AG + E
Sbjct: 158 GVATLGLPSSPGVPKKTTANTLT-TPYNDLEAVKA-LFAEN---------PGEIAGVILE 206
Query: 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHGVVPDI 319
I G G I G+L + + + L + DEV GF A G E GV PD+
Sbjct: 207 PIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQ----EKFGVTPDL 262
Query: 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVIQKDKL 376
T+ K IG G+P+GA EI +++ T GNP+ AG L+++++
Sbjct: 263 TTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGT 322
Query: 377 QNNAHVVGSYLKERLTALKDKYG 399
+ L + L A+ + G
Sbjct: 323 YEYLDQITKRLSDGLLAIAQETG 345
>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde
Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate From Bacillus Subtilis
Length = 438
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 148/347 (42%), Gaps = 28/347 (8%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI-QHSTVLYLN 140
P+ + GK +FD +G Y+D + GH + D +V +K++ ++ T
Sbjct: 44 PIFMERGKGSKIFDIDGNEYIDYVLSWGPLILGHTN----DRVVESLKKVAEYGTSFGAP 99
Query: 141 HAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199
+ + A+ + ++P ++++V +SGTEA A+ +AR YTG N I+ YHG+
Sbjct: 100 TEVENELAKLVIDRVP-SVEIVRMVSSGTEATMSALRLARGYTGRNKILKFEGCYHGHGD 158
Query: 200 GTMGATAQSNWKFNV-----VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH 254
+ + V G+ PY D E Q FG
Sbjct: 159 SLLIKAGSGVATLGLPDSPGVPEGIAKNTITVPYN-----DLESVKLAFQQ---FGED-- 208
Query: 255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG 314
+AG + E + G G++ G+L + ++ G L I DEV GF + G+ G
Sbjct: 209 IAGVIVEPVAGNMGVVPPQEGFLQGLRDITEQYGSLLIFDEVMTGFRVDYNCAQGY--FG 266
Query: 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVI 371
V PD+ + K IG G+P+GA EI E + T GNP+ AG LK +
Sbjct: 267 VTPDLTCLGKVIGGGLPVGAYGGKAEIMEQIAPSGPIYQAGTLSGNPLAMTAGLETLKQL 326
Query: 372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
D +N G L+E ++ + +GI G ++G F +
Sbjct: 327 TPDSYKNFIK-KGDRLEEGISKAAEAHGIPHTFNRAGSMIGFFFTNE 372
>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AO9|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
Length = 454
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 139/341 (40%), Gaps = 33/341 (9%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
PL + G+ L+D +G RY D GH P + D+++ ++ + H
Sbjct: 70 PLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQ----GGINLTGH 125
Query: 142 AIAD--FAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199
+ + A + + P ++ + FTNSGTEAN +A+ A +TG I+ YHG
Sbjct: 126 NLLEGRLARLICERFP-QIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVL 184
Query: 200 GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFL 259
G + + F+ + PY A ++ + +A L
Sbjct: 185 GFGARPSPTTVPFDFLVL---------PYNDAQTARAQIERHGPE----------IAVVL 225
Query: 260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDI 319
E +QG G I P +L A+ +S + G L + DEV +R H + G+ D+
Sbjct: 226 VEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT--SRLAPHGLANKL-GIRSDL 282
Query: 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRRN----YFNTFGGNPVCTAAGHAVLKVIQKDK 375
T+ K IG G+ GA ++ + R + TF N + AAG+A L + +
Sbjct: 283 TTLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPE 342
Query: 376 LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFV 416
G L+ RL AL G+ G G L+ FV
Sbjct: 343 AAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFV 383
>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From
Thermosynechococcus Elongatus
Length = 411
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 131/298 (43%), Gaps = 33/298 (11%)
Query: 89 KMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAE 148
K +++D +G +Y+D G GH HP V+D++ +++ L I AE
Sbjct: 26 KGAHIWDVDGNQYIDYVGSWGPAIVGHAHPEVIDALHAALEKGTSFGAPCLLENI--LAE 83
Query: 149 ALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA------AGTM 202
+ + +P ++++V F NSGTEA + + R YT +I YHG+A AG+
Sbjct: 84 MVIAAVP-SVEMVRFVNSGTEACMAVLRLMRAYTQREKVIKFEGCYHGHADMFLVKAGSG 142
Query: 203 GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADG--EMYAKDVQDLIDFGTSGHVAGFLS 260
AT V + L PY + E Y D +AG +
Sbjct: 143 VATLGLPDSPGVPKATTAATLT-APYNDLEAVSRLFEQYPND------------IAGVIL 189
Query: 261 ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHGVVPD 318
E + G G I G+L + + K+ G L + DEV GF A G+ E GV PD
Sbjct: 190 EPVVGNAGFIPPDAGFLEGLRELTKQYGALLVFDEVMTGFRIAYGGAQ----EKFGVTPD 245
Query: 319 IVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCTAAGHAVLKVIQK 373
+ T+ K IG G+P+GA EI +++ T GNP+ AG L+++ +
Sbjct: 246 LTTLGKVIGGGLPVGAYGGRAEIMKMVAPAGPVYQAGTLSGNPLAMTAGIKTLEILSR 303
>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Yersinia Pestis Co92
Length = 429
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 133/336 (39%), Gaps = 58/336 (17%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
PL + YLFD +G+ Y+D G GH HP + +++ ++R L+
Sbjct: 36 PLFIERADGAYLFDVDGKAYIDYVGSWGPXILGHNHPAIRQAVIEAVER-------GLSF 88
Query: 142 AIADFAEALASKMPGNL----KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN 197
E +++ +L V NSGTEA AI +AR YTG + II YHG+
Sbjct: 89 GAPTEXEVKXAQLVTDLVPTXDXVRXVNSGTEATXSAIRLARGYTGRDKIIKFEGCYHGH 148
Query: 198 A------AGTMGATAQSNWKFNVVQTGVHHAL-----NPDPYRGVFGADGEMYAKDVQDL 246
A AG+ T V H L + R F E Y ++
Sbjct: 149 ADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAF----EQYPQE---- 200
Query: 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTG 304
VA + E + G I P +LP + + G L I DEV GF A G
Sbjct: 201 --------VACIIVEPVAGNXNCIPPLPEFLPGLRALCDEFGALLIIDEVXTGFRVALAG 252
Query: 305 SHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCT 361
+ + + V+PD+ + K IG G P+GA E+ L T GNP+
Sbjct: 253 AQDY----YHVIPDLTCLGKIIGGGXPVGAFGGRREVXNALAPTGPVYQAGTLSGNPIAX 308
Query: 362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDK 397
AAG A L I + VG Y E LT L D
Sbjct: 309 AAGFACLTEISQ---------VGVY--ETLTELTDS 333
>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
Length = 465
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 87/324 (26%), Positives = 130/324 (40%), Gaps = 35/324 (10%)
Query: 75 LFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS 134
LFH PL + G D +G Y++ G GH HP + ++ + +
Sbjct: 77 LFH-RPFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNL 135
Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
+ N A+ FAEA+ + P ++ +V FTNSGTEAN +A+ A TG +++ Y
Sbjct: 136 STQTENEAL--FAEAVCDRFP-SIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGY 192
Query: 195 HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID-FGTSG 253
HG A +N ++VV GV+ DV+ D G
Sbjct: 193 HGGLLNFASGHAPTNAPYHVVL-------------GVY--------NDVEGTADLLKRHG 231
Query: 254 H-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA 312
H A L E + G GG + +L + + G L I DEV G E
Sbjct: 232 HDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTSRLSGGG---AQEM 288
Query: 313 HGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVL--TRRNYF---NTFGGNPVCTAAGHAV 367
G+ D+ T+ K IG G+ GA ++ E R F TF N + +AGHA
Sbjct: 289 LGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAA 348
Query: 368 LKVIQKDKLQNNAHVVGSYLKERL 391
L I + ++ G + L
Sbjct: 349 LTQIYTRQAASDLSASGDRFRANL 372
>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|B Chain B, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|C Chain C, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|D Chain D, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
Length = 429
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 97/384 (25%), Positives = 156/384 (40%), Gaps = 54/384 (14%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI-QHSTVLYLN 140
PL GK ++D +G Y+D + GH + D +V +K + + T
Sbjct: 36 PLFXERGKGSKVYDIDGNEYIDYVLSWGPLIHGHAN----DRVVEALKAVAERGTSFGAP 91
Query: 141 HAIAD-FAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHG--- 196
I + A+ + ++P ++++V NSGTEA A+ +AR YTG N I+ YHG
Sbjct: 92 TEIENKLAKLVIERVP-SIEIVRXVNSGTEATXSALRLARGYTGRNKILKFIGCYHGHGD 150
Query: 197 -------NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF 249
+ T+G V + + A N D E + D
Sbjct: 151 SLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYN----------DLESVKYAFEQFGD- 199
Query: 250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309
+A + E + G G++ PG+L + + ++ G L I DEV GF + G
Sbjct: 200 ----DIACVIVEPVAGNXGVVPPQPGFLEGLREVTEQNGALLIFDEVXTGFRVAYNCGQG 255
Query: 310 FEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF---NTFGGNPVCTAAGHA 366
+ +GV PD+ + K IG G+P+GA EI + T GNP+ AAG+
Sbjct: 256 Y--YGVTPDLTCLGKVIGGGLPVGAYGGKAEIXRQVAPSGPIYQAGTLSGNPLAXAAGYE 313
Query: 367 VLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKT 423
L + + + + A L+ L +K+GI + G +G+ F TD
Sbjct: 314 TLVQLTPESYVEFERKAEX----LEAGLRKAAEKHGIPHHINRAGSXIGI-FFTD----- 363
Query: 424 PAKAETLYIMDKMKGICALFFSQY 447
E + D K FF+ Y
Sbjct: 364 ----EPVINYDAAKSSNLQFFAAY 383
>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 103/371 (27%), Positives = 157/371 (42%), Gaps = 48/371 (12%)
Query: 83 LNVVDGKMQYLFDE-NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
L++ YL D GRRYLD F +A+ G P +VD + +Q + N
Sbjct: 37 LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 142 -----AIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYTGCND-------- 186
A+A F E A ++ G+ L +FF G A E A+ A + ++
Sbjct: 97 DVYSVAMARFVETFA-RVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPA 155
Query: 187 ----IISLRNAYHGNAAGTMGATAQSNW------KFNVVQTGVHHALNP---DPYRGVFG 233
++ LR A+HG + T+ T KF+ + + + P +P
Sbjct: 156 LGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPY-MRPGLDEPAMAALE 214
Query: 234 ADGEMYAKDVQDLIDFGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292
A+ A+ F T H +A F++E IQG GG P + A+ + + L I
Sbjct: 215 AEALRQARAA-----FETRPHDIACFVAEPIQGAGGDRHFRPEFFAAMRELCDEFDALLI 269
Query: 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAE----VLTR 347
DEVQ G TG+ W ++ V PDIV K G+ G V E+A+ V +R
Sbjct: 270 FDEVQTGCGLTGTA-WAYQQLDVAPDIVAFGKKTQVCGVMAGRRVD--EVADNVFAVPSR 326
Query: 348 RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRG 406
N +T+GGN +L+VI+ + L A G YL+ RL L + ++ D RG
Sbjct: 327 LN--STWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRG 384
Query: 407 RGFLLGVEFVT 417
RG + T
Sbjct: 385 RGLMCAFSLPT 395
>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form
pdb|2CJG|A Chain A, Lysine Aminotransferase From M. Tuberculosis In Bound Pmp
Form
pdb|2CJH|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form With Bound Substrate 2-
Ketoglutarate
pdb|2JJG|A Chain A, Crystal Structure Of The M. Tuberculosis Lysine-Epsilon
Aminotransferase (Rv3290c) Complexed To An Inhibitor
pdb|2CJD|A Chain A, Lysine Aminotransferase From M. Tuberculosis In External
Aldimine Form
Length = 449
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 101/371 (27%), Positives = 155/371 (41%), Gaps = 48/371 (12%)
Query: 83 LNVVDGKMQYLFDE-NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
L++ YL D GRRYLD F +A+ G P +VD + +Q + N
Sbjct: 37 LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 142 -----AIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYTGCND-------- 186
A+A F E A ++ G+ L +FF G A E A+ A + ++
Sbjct: 97 DVYSVAMARFVETFA-RVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPA 155
Query: 187 ----IISLRNAYHGNAAGTMGATAQSNW------KFNVVQTGVHHALNP---DPYRGVFG 233
++ LR A+HG + T+ T KF+ + + + P +P
Sbjct: 156 LGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPY-MRPGLDEPAMAALE 214
Query: 234 ADGEMYAKDVQDLIDFGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292
A+ A+ F T H +A F++E IQG GG P + A+ + + L I
Sbjct: 215 AEALRQARAA-----FETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLI 269
Query: 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAK-----GIGNGIPLGAVVTTPEIAEVLTR 347
DEVQ G TG+ W ++ V PDIV K G+ G + V + V +R
Sbjct: 270 FDEVQTGCGLTGTA-WAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADN--VFAVPSR 326
Query: 348 RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRG 406
N +T+GGN +L+VI+ + L A G YL+ RL L + ++ D RG
Sbjct: 327 LN--STWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRG 384
Query: 407 RGFLLGVEFVT 417
RG + T
Sbjct: 385 RGLMCAFSLPT 395
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 96/409 (23%), Positives = 159/409 (38%), Gaps = 58/409 (14%)
Query: 48 FDYSPP----PYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLD 103
FDY P GP + E++ + + H + N + + YL D +G R LD
Sbjct: 11 FDYDGPLMKTEVPGPRSRELMKQLNIIQNAEAVHFFC---NYEESRGNYLVDVDGNRMLD 67
Query: 104 AFGGIATVCCGHCHPYVVDSIVNQIKRIQHST------VLYLNHAIADFAEALASKMPGN 157
+ I+++ G+ HP +V +V Q + + +L + + E+L S P
Sbjct: 68 LYSQISSIPIGYSHPALV-KLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKG 126
Query: 158 LKVVFFTNSGTEANE------------------------LAIMMARLYTGCND--IISLR 191
+ + G+ +NE L M GC D I+S
Sbjct: 127 MSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFM 186
Query: 192 NAYHGNAAGTMGAT-AQSNWKFNVVQTGVHHALNPD---PYRGVFGADGEMYAKDVQDLI 247
A+HG G + T +++ K ++ A P P + + A+ ++++
Sbjct: 187 GAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVE 246
Query: 248 DF-----GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR 302
D VAG + E IQ GG + + + +K G + DEVQ G
Sbjct: 247 DLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGS 306
Query: 303 TGSHFWGFEAHGV--VPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
TG FW E G+ D++T +K + G P + FNT+ G+P
Sbjct: 307 TGK-FWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRI-----FNTWLGDPSK 360
Query: 361 TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRGRG 408
V+ +I+++ L +NA G L L L+ +Y I VRGRG
Sbjct: 361 NLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRG 409
>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M.
Tuberculosis
Length = 449
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 155/371 (41%), Gaps = 48/371 (12%)
Query: 83 LNVVDGKMQYLFDE-NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
L++ YL D GRRYLD F +A+ G P +VD + +Q + N
Sbjct: 37 LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 142 -----AIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYTGCND-------- 186
A+A F E A ++ G+ L +FF G A E A+ A + ++
Sbjct: 97 DVYSVAMARFVETFA-RVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPA 155
Query: 187 ----IISLRNAYHGNAAGTMGATAQSNW------KFNVVQTGVHHALNP---DPYRGVFG 233
++ LR A+HG + T+ T KF+ + + + P +P
Sbjct: 156 LGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPY-MRPGLDEPAMAALE 214
Query: 234 ADGEMYAKDVQDLIDFGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292
A+ A+ F T H +A F++E IQG GG P + A+ + + L I
Sbjct: 215 AEALRQARAA-----FETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLI 269
Query: 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAK-----GIGNGIPLGAVVTTPEIAEVLTR 347
DEVQ G TG+ W ++ V PDIV K G+ G + V + V +R
Sbjct: 270 FDEVQTGCGLTGTA-WAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADN--VFAVPSR 326
Query: 348 RNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRG 406
N +++GGN +L+VI+ + L A G YL+ RL L + ++ D RG
Sbjct: 327 LN--SSWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRG 384
Query: 407 RGFLLGVEFVT 417
RG + T
Sbjct: 385 RGLMCAFSLPT 395
>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 100/373 (26%), Positives = 153/373 (41%), Gaps = 52/373 (13%)
Query: 83 LNVVDGKMQYLFDE-NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
L++ YL D GRRYLD F +A+ G P +VD + +Q + N
Sbjct: 37 LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 142 -----AIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYTGCND-------- 186
A+A F E A ++ G+ L +FF G A E A+ A + ++
Sbjct: 97 DVYSVAMARFVETFA-RVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPA 155
Query: 187 ----IISLRNAYHGNAAGTMGATAQSNW------KFNVVQTGVHHALNP---DPYRGVFG 233
++ LR A+HG + T+ T KF+ + + + P +P
Sbjct: 156 LGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPY-MRPGLDEPAMAALE 214
Query: 234 ADGEMYAKDVQDLIDFGTSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292
A+ A+ F T H +A F++E IQG GG P + A+ + + L I
Sbjct: 215 AEALRQARAA-----FETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLI 269
Query: 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF- 351
DEVQ G TG+ W ++ V PDIV G + V+ + EV N F
Sbjct: 270 FDEVQTGCGLTGTA-WAYQQLDVAPDIV----AFGKKTQVCGVMAGRRVDEVAD--NVFA 322
Query: 352 ------NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDV 404
+T+GGN +L+VI+ + L A G YL+ RL L + ++ D
Sbjct: 323 VPSRLASTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDP 382
Query: 405 RGRGFLLGVEFVT 417
RGRG + T
Sbjct: 383 RGRGLMCAFSLPT 395
>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFT|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
Length = 457
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 126/289 (43%), Gaps = 29/289 (10%)
Query: 102 LDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMPGNLKV 160
LDA T GH HP + ++ Q++ + H L H A A+ L P L
Sbjct: 78 LDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDT 137
Query: 161 VFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGAT-----AQSN 209
VFF++SG+ + E+A MA Y G +++ R YHG+ M S
Sbjct: 138 VFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL 197
Query: 210 WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESI-QGVGG 268
W +V+ V P Y + A E A+ Q +G +A + E + QG GG
Sbjct: 198 WT-DVLAAQVFAPQVPRDYDPAYSAAFE--AQLAQH------AGELAAVVVEPVVQGAGG 248
Query: 269 IIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN 328
+ P YL + ++ L I DE+ GF RTG+ F A GV PDI+ + K +
Sbjct: 249 MRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHA-GVSPDIMCVGKALTG 307
Query: 329 G-IPLGAVVTTPEIAEVLT-----RRNYFNTFGGNPVCTAAGHAVLKVI 371
G + L A + T ++A ++ + TF NP+ A A ++++
Sbjct: 308 GYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELL 356
>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
pdb|3LV2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
Length = 462
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 125/289 (43%), Gaps = 29/289 (10%)
Query: 102 LDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA-IADFAEALASKMPGNLKV 160
LDA T GH HP + ++ Q++ + H L H A A+ L P L
Sbjct: 83 LDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDT 142
Query: 161 VFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGAT-----AQSN 209
VFF++SG+ + E+A MA Y G +++ R YHG+ M S
Sbjct: 143 VFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL 202
Query: 210 WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESI-QGVGG 268
W +V+ V P Y + A E A+ Q +G +A + E + QG GG
Sbjct: 203 WT-DVLAAQVFAPQVPRDYDPAYSAAFE--AQLAQH------AGELAAVVVEPVVQGAGG 253
Query: 269 IIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN 328
+ P YL + ++ L I DE+ GF RTG+ F A GV PDI+ + K +
Sbjct: 254 MRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHA-GVSPDIMCVGKALTG 312
Query: 329 G-IPLGAVVTTPEIAEVLTRRNYFN-----TFGGNPVCTAAGHAVLKVI 371
G + L A + T ++A ++ TF NP+ A A ++++
Sbjct: 313 GYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELL 361
>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
pdb|3BV0|B Chain B, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
Length = 437
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 125/289 (43%), Gaps = 29/289 (10%)
Query: 102 LDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMPGNLKV 160
LDA T GH HP + ++ Q++ + H L H A A+ L P L
Sbjct: 58 LDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDT 117
Query: 161 VFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGAT-----AQSN 209
VFF++SG+ + E+A MA Y G +++ R YHG+ M S
Sbjct: 118 VFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL 177
Query: 210 WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESI-QGVGG 268
W +V+ V P Y + A E A+ Q +G +A + E + QG GG
Sbjct: 178 WT-DVLAAQVFAPQVPRDYDPAYSAAFE--AQLAQH------AGELAAVVVEPVVQGAGG 228
Query: 269 IIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN 328
+ P YL + ++ L I DE+ GF RTG+ F A GV PDI+ + K +
Sbjct: 229 MRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHA-GVSPDIMCVGKALTG 287
Query: 329 G-IPLGAVVTTPEIAEVLTRRNYFN-----TFGGNPVCTAAGHAVLKVI 371
G + L A + T ++A ++ TF NP+ A A ++++
Sbjct: 288 GYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELL 336
>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase
(D-Phgat) From Pseudomonas Strutzeri St-201
Length = 453
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 152/331 (45%), Gaps = 34/331 (10%)
Query: 83 LNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA 142
L + D + + D +G YLD FGG + GH HP V +I + + H +H
Sbjct: 41 LFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIA---EALSHGVQYAASHP 97
Query: 143 I-ADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGT 201
+ +AE + + P +++ + FT SGTE LA+ +AR +TG I+ YHG
Sbjct: 98 LEVRWAERIVAAFP-SIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHG----- 151
Query: 202 MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGE----MYAKDVQDLID-FGTSG-HV 255
W + +G + + P GV + D++ + + F G +
Sbjct: 152 --------WH-DFSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDI 202
Query: 256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA-HG 314
A F++E + G+ ++ +L + ++ G L I DEV +GF R G+H G +A
Sbjct: 203 AAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNH--GMQALLD 259
Query: 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN-----YFNTFGGNPVCTAAGHAVLK 369
V PD+ +AK G+P G + ++ VL+R + + TF GNP+ AA A +
Sbjct: 260 VQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAID 319
Query: 370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGI 400
I +D + + +G + +E + L + G+
Sbjct: 320 TILEDDVCAKINDLGQFAREAMNHLFARKGL 350
>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb).
pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb)
Length = 831
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 98/264 (37%), Gaps = 70/264 (26%)
Query: 161 VFFTNSGTEANELAIMMARLYTGCND----------------IISLRNAYHGNAAGTMGA 204
V+F+++G+ A E+A+ MA C D +I+LR +YHG+ G M A
Sbjct: 445 VYFSDNGSTAIEIALKMA-FRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEA 503
Query: 205 TAQSNWKFNVVQ---TGVHHALNPD---------------------PYRGVFGADGEMY- 239
A S + + Q TG L+P P G F + E++
Sbjct: 504 QAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFD 563
Query: 240 ----------------AKDVQDLIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYK 282
+K +Q+ S HV + E I G GG+ + P + +
Sbjct: 564 KSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVN 623
Query: 283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEI 341
+ I DEV GF R G E G PDI AK + G +PL + T +
Sbjct: 624 ECRNRKIPVIFDEVFTGFWRLGVET-TTELLGCKPDIACFAKLLTGGMVPLAVTLATDAV 682
Query: 342 AEVLTRRNYFNTFGGNPVCTAAGH 365
F++F G+ A H
Sbjct: 683 ---------FDSFSGDSKLKALLH 697
>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form.
pdb|4A0F|B Chain B, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form
Length = 831
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 95/264 (35%), Gaps = 70/264 (26%)
Query: 161 VFFTNSGTEANELAIMMARLYTGCND----------------IISLRNAYHGNAAGTMGA 204
V+F+++G+ A E+A+ A C D +I+LR +YHG+ G A
Sbjct: 445 VYFSDNGSTAIEIALKXA-FRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAXEA 503
Query: 205 TAQSNWKFNVVQ---TGVHHALNPD---------------------PYRGVFGADGEMY- 239
A S + + Q TG L+P P G F + E++
Sbjct: 504 QAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFD 563
Query: 240 ----------------AKDVQDLIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYK 282
+K +Q+ S HV + E I G GG + P + +
Sbjct: 564 KSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGXHXVDPLFQRVLVN 623
Query: 283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI-GNGIPLGAVVTTPEI 341
+ I DEV GF R G E G PDI AK + G +PL + T +
Sbjct: 624 ECRNRKIPVIFDEVFTGFWRLGVET-TTELLGCKPDIACFAKLLTGGXVPLAVTLATDAV 682
Query: 342 AEVLTRRNYFNTFGGNPVCTAAGH 365
F++F G+ A H
Sbjct: 683 ---------FDSFSGDSKLKALLH 697
>pdb|2GSE|A Chain A, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|B Chain B, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|C Chain C, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|D Chain D, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2VM8|A Chain A, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|B Chain B, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|C Chain C, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|D Chain D, Human Crmp-2 Crystallised In The Presence Of Mg
Length = 501
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 77/202 (38%), Gaps = 39/202 (19%)
Query: 231 VFGADGEMYAKDVQDLIDFGTSGHVAGFLSE----SIQGVGGIIELA-----PGYLPAVY 281
V +G++ A++ Q ++D G +G LS + V I +A P Y+ V
Sbjct: 208 VHAENGDIIAEEQQRILDLGITGPEGHVLSRPEEVEAEAVNRAITIANQTNCPLYITKVM 267
Query: 282 K--------SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLG 333
+K G + + + A GSH+W N
Sbjct: 268 SKSSAEVIAQARKKGTVVYGEPITASLGTDGSHYWS-----------------KNWAKAA 310
Query: 334 AVVTTPEIAEVLTRRNYFNTF--GGNPVCTAAGHAVLKVIQKDKLQNNAHVV---GSYLK 388
A VT+P ++ T ++ N+ G+ T + H QK ++N ++ + +
Sbjct: 311 AFVTSPPLSPDPTTPDFLNSLLSCGDLQVTGSAHCTFNTAQKAVGKDNFTLIPEGTNGTE 370
Query: 389 ERLTALKDKYGIIGDVRGRGFL 410
ER++ + DK + G + F+
Sbjct: 371 ERMSVIWDKAVVTGKMDENQFV 392
>pdb|2BBZ|A Chain A, Crystal Structure Of Mc159 Reveals Molecular Mechanism Of
Disc Assembly And Vflip Inhibition
pdb|2BBZ|B Chain B, Crystal Structure Of Mc159 Reveals Molecular Mechanism Of
Disc Assembly And Vflip Inhibition
pdb|2BBZ|C Chain C, Crystal Structure Of Mc159 Reveals Molecular Mechanism Of
Disc Assembly And Vflip Inhibition
pdb|2BBZ|D Chain D, Crystal Structure Of Mc159 Reveals Molecular Mechanism Of
Disc Assembly And Vflip Inhibition
Length = 249
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 351 FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL 410
F P CT A+ + Q+ KL A V Y+ +R+ LK ++G+ + G L
Sbjct: 30 FLCHDAAPGCTTVTQALCSLSQQRKLTLAALVEMLYVLQRMDLLKSRFGLSKE--GAEQL 87
Query: 411 LGVEFVT 417
LG F+T
Sbjct: 88 LGTSFLT 94
>pdb|2BBR|A Chain A, Crystal Structure Of Mc159 Reveals Molecular Mechanism Of
Disc Assembly And Vflip Inhibition
Length = 195
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 351 FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL 410
F P CT A+ + Q+ KL A V Y+ +R+ LK ++G+ + G L
Sbjct: 30 FLCHDAAPGCTTVTQALCSLSQQRKLTLAALVEMLYVLQRMDLLKSRFGLSKE--GAEQL 87
Query: 411 LGVEFVT 417
LG F+T
Sbjct: 88 LGTSFLT 94
>pdb|2F1S|A Chain A, Crystal Structure Of A Viral Flip Mc159
Length = 186
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 351 FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL 410
F P CT A+ + Q+ KL A V Y+ +R+ LK ++G+ + G L
Sbjct: 33 FLCHDAAPGCTTVTQALCSLSQQRKLTLAALVEMLYVLQRMDLLKSRFGLSKE--GAEQL 90
Query: 411 LGVEFVT 417
LG F+T
Sbjct: 91 LGTSFLT 97
>pdb|1KCX|A Chain A, X-Ray Structure Of Nysgrc Target T-45
pdb|1KCX|B Chain B, X-Ray Structure Of Nysgrc Target T-45
Length = 518
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 22/131 (16%)
Query: 285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEV 344
+K G L + + A G+H+W N A VT+P ++
Sbjct: 261 RKKGPLVFGEPIAASLGTDGTHYWS-----------------KNWAKAAAFVTSPPLSPD 303
Query: 345 LTRRNYFNTF--GGNPVCTAAGHAVLKVIQKDKLQNNAHVVG---SYLKERLTALKDKYG 399
T +Y + G+ T +GH QK ++N ++ + ++ER+T + DK
Sbjct: 304 PTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVWDKAV 363
Query: 400 IIGDVRGRGFL 410
G + F+
Sbjct: 364 ATGKMDENQFV 374
>pdb|4EB5|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB5|B Chain B, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB7|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB7|B Chain B, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4HVK|A Chain A, Crystal Structure And Functional Studies Of An Unusual
L-Cysteine Desulfurase From Archaeoglobus Fulgidus
Length = 382
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM 176
PY+ +S N HS A+ + E +A + G V FT+ TEAN LAI+
Sbjct: 22 PYMTESFGNPSS--VHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAII 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,029,830
Number of Sequences: 62578
Number of extensions: 622138
Number of successful extensions: 1617
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1284
Number of HSP's gapped (non-prelim): 95
length of query: 447
length of database: 14,973,337
effective HSP length: 102
effective length of query: 345
effective length of database: 8,590,381
effective search space: 2963681445
effective search space used: 2963681445
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)