Query 013235
Match_columns 447
No_of_seqs 312 out of 2215
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 06:45:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4atq_A 4-aminobutyrate transam 100.0 3.3E-83 1.1E-87 659.1 44.3 388 53-444 20-419 (456)
2 4e3q_A Pyruvate transaminase; 100.0 1.4E-79 4.8E-84 634.5 39.9 382 62-445 26-436 (473)
3 4ao9_A Beta-phenylalanine amin 100.0 7.3E-74 2.5E-78 587.6 37.5 364 57-445 41-417 (454)
4 3i5t_A Aminotransferase; pyrid 100.0 1E-65 3.4E-70 534.5 41.3 382 61-445 12-422 (476)
5 4ffc_A 4-aminobutyrate aminotr 100.0 3.5E-65 1.2E-69 527.3 43.8 388 54-445 21-414 (453)
6 3oks_A 4-aminobutyrate transam 100.0 5E-65 1.7E-69 525.8 42.4 388 54-445 18-416 (451)
7 4a0g_A Adenosylmethionine-8-am 100.0 4E-67 1.4E-71 574.2 25.6 381 64-445 335-796 (831)
8 3hmu_A Aminotransferase, class 100.0 2.2E-65 7.4E-70 531.3 36.9 383 60-445 12-420 (472)
9 3gju_A Putative aminotransfera 100.0 7.1E-62 2.4E-66 503.3 40.0 383 62-445 8-422 (460)
10 3n5m_A Adenosylmethionine-8-am 100.0 1.5E-61 5.2E-66 499.4 41.1 384 59-445 8-413 (452)
11 3tfu_A Adenosylmethionine-8-am 100.0 9.4E-62 3.2E-66 502.1 39.0 372 57-445 27-421 (457)
12 4a6r_A Omega transaminase; tra 100.0 6.7E-62 2.3E-66 503.3 37.3 382 62-445 9-417 (459)
13 3dod_A Adenosylmethionine-8-am 100.0 3.7E-61 1.3E-65 496.1 36.7 380 62-445 4-411 (448)
14 3l44_A Glutamate-1-semialdehyd 100.0 1.3E-58 4.3E-63 474.7 38.0 378 57-445 5-399 (434)
15 2yky_A Beta-transaminase; tran 100.0 9.7E-64 3.3E-68 515.5 0.0 364 57-445 54-431 (465)
16 4e77_A Glutamate-1-semialdehyd 100.0 1.3E-58 4.3E-63 474.2 36.9 376 59-445 6-398 (429)
17 3k28_A Glutamate-1-semialdehyd 100.0 3.8E-58 1.3E-62 470.9 35.5 377 57-445 4-396 (429)
18 3fq8_A Glutamate-1-semialdehyd 100.0 2.7E-57 9.2E-62 463.9 36.1 378 57-445 3-396 (427)
19 1z7d_A Ornithine aminotransfer 100.0 1.6E-56 5.4E-61 459.9 39.1 359 58-445 27-396 (433)
20 3dxv_A Alpha-amino-epsilon-cap 100.0 3.4E-56 1.2E-60 457.4 40.0 378 61-445 7-390 (439)
21 2oat_A Ornithine aminotransfer 100.0 3E-56 1E-60 458.7 38.9 359 57-445 37-406 (439)
22 1zod_A DGD, 2,2-dialkylglycine 100.0 2.8E-56 9.4E-61 457.0 38.2 384 59-445 5-395 (433)
23 3i4j_A Aminotransferase, class 100.0 4E-56 1.4E-60 455.6 37.8 360 79-445 9-388 (430)
24 1ohv_A 4-aminobutyrate aminotr 100.0 3.6E-56 1.2E-60 462.2 32.4 372 55-445 22-438 (472)
25 2epj_A Glutamate-1-semialdehyd 100.0 5.8E-56 2E-60 455.1 33.4 379 56-445 8-400 (434)
26 2e7u_A Glutamate-1-semialdehyd 100.0 4.7E-55 1.6E-59 447.1 34.0 376 58-445 4-396 (424)
27 3nx3_A Acoat, acetylornithine 100.0 2.6E-54 9E-59 436.9 34.1 340 78-445 15-362 (395)
28 2cjg_A L-lysine-epsilon aminot 100.0 6.8E-55 2.3E-59 449.8 29.4 368 61-445 18-415 (449)
29 2pb2_A Acetylornithine/succiny 100.0 8.4E-54 2.9E-58 437.8 33.3 356 61-445 22-385 (420)
30 2cy8_A D-phgat, D-phenylglycin 100.0 8E-53 2.7E-57 434.3 34.0 373 58-444 12-405 (453)
31 3a8u_X Omega-amino acid--pyruv 100.0 3.2E-52 1.1E-56 429.2 34.1 361 80-445 31-415 (449)
32 2eo5_A 419AA long hypothetical 100.0 7.1E-51 2.4E-55 415.8 37.0 365 60-445 3-385 (419)
33 1s0a_A Adenosylmethionine-8-am 100.0 4.3E-49 1.5E-53 403.3 42.8 366 65-445 7-392 (429)
34 1sff_A 4-aminobutyrate aminotr 100.0 1.9E-48 6.4E-53 397.4 40.9 381 59-445 3-389 (426)
35 3ruy_A Ornithine aminotransfer 100.0 7.6E-49 2.6E-53 396.2 35.4 348 63-445 3-361 (392)
36 4adb_A Succinylornithine trans 100.0 4.6E-48 1.6E-52 391.8 36.1 342 78-445 18-367 (406)
37 2ord_A Acoat, acetylornithine 100.0 1.7E-44 5.7E-49 365.2 32.9 338 79-445 20-364 (397)
38 1vef_A Acetylornithine/acetyl- 100.0 1.1E-43 3.6E-48 358.9 31.3 355 61-445 7-364 (395)
39 2eh6_A Acoat, acetylornithine 100.0 2.2E-41 7.6E-46 339.1 32.4 330 80-445 9-345 (375)
40 3l8a_A METC, putative aminotra 100.0 1.2E-35 4E-40 303.1 21.4 330 80-445 40-385 (421)
41 2w8t_A SPT, serine palmitoyltr 100.0 8.9E-34 3.1E-38 289.9 29.5 333 59-445 26-375 (427)
42 3tqx_A 2-amino-3-ketobutyrate 100.0 7.2E-31 2.5E-35 264.4 28.7 316 78-445 23-356 (399)
43 1fc4_A 2-amino-3-ketobutyrate 100.0 4.7E-31 1.6E-35 266.5 27.1 317 78-445 24-357 (401)
44 3dzz_A Putative pyridoxal 5'-p 100.0 1.4E-30 4.9E-35 261.5 23.0 327 83-445 11-352 (391)
45 3kax_A Aminotransferase, class 100.0 5.3E-30 1.8E-34 256.7 23.6 327 82-445 6-348 (383)
46 1d2f_A MALY protein; aminotran 100.0 3.6E-29 1.2E-33 251.9 25.4 322 84-445 8-352 (390)
47 1bs0_A Protein (8-amino-7-oxon 100.0 1.3E-28 4.3E-33 247.3 29.1 313 78-445 19-347 (384)
48 3fdb_A Beta C-S lyase, putativ 100.0 1.2E-30 4E-35 261.1 14.1 319 84-445 8-339 (377)
49 4dq6_A Putative pyridoxal phos 100.0 5E-30 1.7E-34 257.6 18.6 325 83-445 11-356 (391)
50 3kki_A CAI-1 autoinducer synth 100.0 1.2E-29 4.2E-34 257.3 20.0 302 87-444 47-363 (409)
51 3ftb_A Histidinol-phosphate am 100.0 6.8E-29 2.3E-33 246.8 24.6 311 82-445 8-325 (361)
52 3a2b_A Serine palmitoyltransfe 100.0 3.5E-28 1.2E-32 245.3 29.2 313 79-445 24-352 (398)
53 1c7n_A Cystalysin; transferase 100.0 1.6E-29 5.6E-34 255.1 19.0 323 84-445 9-356 (399)
54 1yiz_A Kynurenine aminotransfe 100.0 1.1E-28 3.9E-33 251.6 24.3 321 100-445 38-387 (429)
55 1lc5_A COBD, L-threonine-O-3-p 100.0 9.4E-29 3.2E-33 246.7 19.1 302 94-445 19-324 (364)
56 3b1d_A Betac-S lyase; HET: PLP 99.9 3.7E-31 1.2E-35 267.0 0.0 324 83-445 13-356 (392)
57 2zc0_A Alanine glyoxylate tran 100.0 4.1E-28 1.4E-32 245.4 19.5 314 97-445 32-364 (407)
58 3ly1_A Putative histidinol-pho 100.0 1.4E-27 4.8E-32 236.8 22.4 307 88-444 5-318 (354)
59 3nra_A Aspartate aminotransfer 100.0 3.1E-28 1.1E-32 246.0 17.0 329 84-445 21-368 (407)
60 3h14_A Aminotransferase, class 100.0 1.5E-27 5.2E-32 240.1 21.8 307 96-445 28-344 (391)
61 2dou_A Probable N-succinyldiam 100.0 9.3E-28 3.2E-32 240.4 19.8 306 96-445 22-341 (376)
62 3euc_A Histidinol-phosphate am 100.0 5.3E-27 1.8E-31 234.0 25.1 301 98-445 29-332 (367)
63 3jtx_A Aminotransferase; NP_28 100.0 5.8E-28 2E-32 243.3 17.9 324 83-445 14-355 (396)
64 2zyj_A Alpha-aminodipate amino 100.0 5.4E-28 1.9E-32 244.0 16.3 310 98-445 31-353 (397)
65 3b46_A Aminotransferase BNA3; 100.0 2.9E-27 1E-31 243.0 21.8 315 97-445 55-405 (447)
66 3aow_A Putative uncharacterize 100.0 2.3E-27 7.9E-32 244.1 20.7 313 98-445 75-405 (448)
67 3ffh_A Histidinol-phosphate am 100.0 1.2E-26 4E-31 231.1 24.7 297 98-445 31-332 (363)
68 3dyd_A Tyrosine aminotransfera 99.9 9.8E-27 3.4E-31 237.6 22.7 317 95-445 50-389 (427)
69 1vp4_A Aminotransferase, putat 99.9 1.3E-27 4.4E-32 243.8 15.1 316 98-445 42-378 (425)
70 3piu_A 1-aminocyclopropane-1-c 99.9 4.9E-27 1.7E-31 240.1 18.9 322 94-445 31-394 (435)
71 2x5d_A Probable aminotransfera 99.9 4E-27 1.4E-31 238.9 18.0 311 96-445 34-361 (412)
72 3ezs_A Aminotransferase ASPB; 99.9 7.5E-27 2.6E-31 233.5 19.0 302 96-445 21-336 (376)
73 3cq5_A Histidinol-phosphate am 99.9 1.3E-25 4.3E-30 224.6 27.1 295 102-445 33-337 (369)
74 2o1b_A Aminotransferase, class 99.9 1.5E-26 5.2E-31 234.4 20.3 307 96-445 44-366 (404)
75 1u08_A Hypothetical aminotrans 99.9 3.9E-26 1.3E-30 229.4 22.3 305 100-445 31-351 (386)
76 1v2d_A Glutamine aminotransfer 99.9 1.4E-26 4.8E-31 232.2 18.8 297 101-445 27-332 (381)
77 1o4s_A Aspartate aminotransfer 99.9 3.4E-26 1.2E-30 230.5 21.6 303 97-445 39-354 (389)
78 1gd9_A Aspartate aminotransfer 99.9 3.8E-26 1.3E-30 229.6 21.3 306 99-445 26-349 (389)
79 1j32_A Aspartate aminotransfer 99.9 6.4E-26 2.2E-30 227.9 22.6 311 97-445 28-352 (388)
80 2o0r_A RV0858C (N-succinyldiam 99.9 4.5E-26 1.5E-30 231.2 21.2 310 100-445 26-348 (411)
81 3hdo_A Histidinol-phosphate am 99.9 7.1E-26 2.4E-30 225.5 22.1 297 96-445 23-321 (360)
82 3fvs_A Kynurenine--oxoglutarat 99.9 1.2E-25 4E-30 228.5 24.1 321 99-445 28-380 (422)
83 3fkd_A L-threonine-O-3-phospha 99.9 7.8E-26 2.7E-30 224.2 21.1 299 86-445 2-306 (350)
84 2z61_A Probable aspartate amin 99.9 1.6E-25 5.5E-30 223.6 23.3 292 97-445 27-334 (370)
85 3e2y_A Kynurenine-oxoglutarate 99.9 8.1E-26 2.8E-30 228.6 21.0 320 99-445 23-371 (410)
86 3g0t_A Putative aminotransfera 99.9 7.9E-26 2.7E-30 230.8 20.5 323 82-445 27-399 (437)
87 1ajs_A Aspartate aminotransfer 99.9 1.6E-26 5.6E-31 234.2 14.7 317 97-445 28-383 (412)
88 1iay_A ACC synthase 2, 1-amino 99.9 1.1E-25 3.9E-30 229.4 20.5 313 100-445 37-389 (428)
89 2bwn_A 5-aminolevulinate synth 99.9 3.4E-24 1.1E-28 216.4 30.2 299 97-445 44-360 (401)
90 3qgu_A LL-diaminopimelate amin 99.9 1E-25 3.5E-30 231.1 18.0 314 95-445 65-403 (449)
91 3op7_A Aminotransferase class 99.9 3.6E-25 1.2E-29 221.3 21.4 271 140-445 62-336 (375)
92 2q7w_A Aspartate aminotransfer 99.9 4.2E-26 1.4E-30 229.7 14.6 318 94-445 21-371 (396)
93 1fg7_A Histidinol phosphate am 99.9 1.7E-25 5.9E-30 222.8 18.7 290 98-445 28-323 (356)
94 2ay1_A Aroat, aromatic amino a 99.9 4E-26 1.4E-30 229.8 13.9 316 97-445 24-368 (394)
95 1xi9_A Putative transaminase; 99.9 5.6E-25 1.9E-29 222.7 21.3 309 96-445 35-366 (406)
96 1elu_A L-cysteine/L-cystine C- 99.9 1.1E-24 3.9E-29 218.2 22.1 303 97-445 15-358 (390)
97 2x5f_A Aspartate_tyrosine_phen 99.9 7.1E-26 2.4E-30 231.0 13.0 311 99-445 47-397 (430)
98 3ele_A Amino transferase; RER0 99.9 2.3E-24 7.9E-29 217.2 22.0 304 97-445 33-361 (398)
99 2gb3_A Aspartate aminotransfer 99.9 2.1E-24 7.1E-29 218.9 21.6 306 96-445 40-362 (409)
100 3get_A Histidinol-phosphate am 99.9 3E-24 1E-28 213.8 21.5 297 99-445 30-334 (365)
101 3asa_A LL-diaminopimelate amin 99.9 3E-24 1E-28 217.0 19.4 303 98-445 32-356 (400)
102 1bw0_A TAT, protein (tyrosine 99.9 2.6E-24 8.9E-29 218.2 18.5 314 99-445 33-378 (416)
103 2e7j_A SEP-tRNA:Cys-tRNA synth 99.9 3.7E-24 1.3E-28 213.2 16.8 297 98-444 8-325 (371)
104 1kmj_A Selenocysteine lyase; p 99.9 8.5E-23 2.9E-27 205.4 25.8 302 97-445 20-360 (406)
105 1t3i_A Probable cysteine desul 99.9 1E-22 3.6E-27 205.9 26.4 304 96-446 24-369 (420)
106 3f9t_A TDC, L-tyrosine decarbo 99.9 2.4E-22 8.3E-27 201.1 27.3 289 115-445 41-364 (397)
107 1vjo_A Alanine--glyoxylate ami 99.9 8.1E-23 2.8E-27 205.4 22.4 295 97-445 32-357 (393)
108 3ei9_A LL-diaminopimelate amin 99.9 2.7E-23 9.3E-28 212.0 19.1 314 95-445 52-391 (432)
109 4f4e_A Aromatic-amino-acid ami 99.9 1.1E-23 3.9E-28 214.2 16.0 314 99-445 49-394 (420)
110 2dr1_A PH1308 protein, 386AA l 99.9 2.4E-22 8.1E-27 201.0 24.7 296 99-445 20-342 (386)
111 2r2n_A Kynurenine/alpha-aminoa 99.9 2.7E-22 9.3E-27 204.5 24.6 275 140-445 81-383 (425)
112 3fsl_A Aromatic-amino-acid ami 99.9 3.8E-23 1.3E-27 208.1 17.6 314 99-445 26-372 (397)
113 1b5p_A Protein (aspartate amin 99.9 3.8E-22 1.3E-26 200.6 24.7 309 97-445 29-350 (385)
114 3t18_A Aminotransferase class 99.9 2.9E-22 1E-26 203.0 24.0 312 98-445 36-382 (413)
115 1uu1_A Histidinol-phosphate am 99.9 1.3E-22 4.4E-27 200.0 20.1 284 99-445 19-309 (335)
116 3ez1_A Aminotransferase MOCR f 99.9 1.6E-23 5.4E-28 213.1 13.3 311 101-445 27-373 (423)
117 3p1t_A Putative histidinol-pho 99.9 6.2E-22 2.1E-26 194.6 23.7 288 97-445 14-303 (337)
118 3lvm_A Cysteine desulfurase; s 99.9 5.2E-22 1.8E-26 201.5 23.2 262 95-393 19-302 (423)
119 1qz9_A Kynureninase; kynurenin 99.9 5.3E-22 1.8E-26 200.9 23.0 297 97-444 27-367 (416)
120 1eg5_A Aminotransferase; PLP-d 99.9 6.7E-22 2.3E-26 197.4 23.0 297 100-445 3-320 (384)
121 1ax4_A Tryptophanase; tryptoph 99.9 3.4E-22 1.2E-26 205.8 19.8 317 97-445 41-390 (467)
122 2dkj_A Serine hydroxymethyltra 99.9 3.9E-22 1.3E-26 201.2 19.8 299 99-445 23-341 (407)
123 3d6k_A Putative aminotransfera 99.9 6.2E-23 2.1E-27 209.0 13.5 310 101-445 34-376 (422)
124 1yaa_A Aspartate aminotransfer 99.9 7.8E-23 2.7E-27 207.2 13.7 277 97-394 27-344 (412)
125 3rq1_A Aminotransferase class 99.9 1E-21 3.5E-26 199.4 21.7 308 98-445 37-384 (418)
126 3ke3_A Putative serine-pyruvat 99.9 1.2E-21 4.2E-26 196.7 21.4 299 92-445 5-334 (379)
127 3kgw_A Alanine-glyoxylate amin 99.9 5.9E-22 2E-26 198.4 18.7 284 116-445 34-350 (393)
128 3ppl_A Aspartate aminotransfer 99.9 6.2E-23 2.1E-27 209.1 11.7 312 101-445 35-378 (427)
129 1m32_A 2-aminoethylphosphonate 99.9 1.4E-21 4.8E-26 193.5 20.2 297 101-445 5-329 (366)
130 3cai_A Possible aminotransfera 99.9 5.6E-21 1.9E-25 192.8 24.7 303 97-445 25-363 (406)
131 3if2_A Aminotransferase; YP_26 99.9 4.2E-22 1.5E-26 203.8 15.7 319 99-445 31-395 (444)
132 3zrp_A Serine-pyruvate aminotr 99.9 5.5E-21 1.9E-25 190.7 23.3 284 116-446 13-328 (384)
133 3g7q_A Valine-pyruvate aminotr 99.9 1E-21 3.5E-26 198.9 17.7 315 99-445 31-369 (417)
134 3qhx_A Cystathionine gamma-syn 99.9 5E-21 1.7E-25 193.4 22.6 260 133-444 58-340 (392)
135 3nnk_A Ureidoglycine-glyoxylat 99.9 2.5E-21 8.4E-26 195.4 20.1 285 116-446 24-353 (411)
136 1svv_A Threonine aldolase; str 99.9 2.4E-21 8.3E-26 191.5 18.6 290 101-443 15-320 (359)
137 2z9v_A Aspartate aminotransfer 99.9 8.2E-21 2.8E-25 190.5 22.1 297 98-445 8-333 (392)
138 3nyt_A Aminotransferase WBPE; 99.9 4.6E-21 1.6E-25 191.4 18.1 284 112-447 6-309 (367)
139 3f0h_A Aminotransferase; RER07 99.9 7.5E-21 2.6E-25 189.7 19.2 288 116-446 30-338 (376)
140 2yrr_A Aminotransferase, class 99.9 5.8E-21 2E-25 188.2 17.2 280 116-445 11-315 (353)
141 2ez2_A Beta-tyrosinase, tyrosi 99.9 1.8E-20 6E-25 192.5 21.3 308 97-443 40-378 (456)
142 2huf_A Alanine glyoxylate amin 99.9 2.3E-20 7.9E-25 187.2 21.5 298 96-445 16-345 (393)
143 1cs1_A CGS, protein (cystathio 99.9 3.8E-20 1.3E-24 186.1 22.6 259 135-444 46-323 (386)
144 2oga_A Transaminase; PLP-depen 99.9 1.8E-20 6.2E-25 189.3 19.6 288 99-446 30-337 (399)
145 2oqx_A Tryptophanase; lyase, p 99.9 5.2E-21 1.8E-25 196.9 15.8 314 98-445 40-391 (467)
146 3isl_A Purine catabolism prote 99.8 4.8E-20 1.6E-24 186.2 21.5 291 113-446 15-353 (416)
147 4eu1_A Mitochondrial aspartate 99.8 4.9E-21 1.7E-25 193.9 13.6 272 99-394 41-344 (409)
148 3vax_A Putative uncharacterize 99.8 3E-20 1E-24 186.9 17.9 303 93-445 15-343 (400)
149 2cb1_A O-acetyl homoserine sul 99.8 2.4E-19 8.2E-24 182.1 24.4 274 112-443 29-352 (412)
150 3nmy_A Xometc, cystathionine g 99.8 3.1E-20 1E-24 188.2 17.6 254 134-437 60-335 (400)
151 1iug_A Putative aspartate amin 99.8 5.7E-20 2E-24 181.3 18.8 279 116-445 12-311 (352)
152 3mad_A Sphingosine-1-phosphate 99.8 1E-19 3.5E-24 190.1 21.6 288 115-444 107-433 (514)
153 2ch1_A 3-hydroxykynurenine tra 99.8 1.5E-19 5.2E-24 181.5 21.6 285 116-446 29-346 (396)
154 1v72_A Aldolase; PLP-dependent 99.8 5.1E-20 1.7E-24 182.0 17.3 293 99-445 7-318 (356)
155 2rfv_A Methionine gamma-lyase; 99.8 1.3E-19 4.3E-24 183.1 20.5 281 116-444 38-339 (398)
156 2vi8_A Serine hydroxymethyltra 99.8 1.2E-19 4.1E-24 182.8 20.3 299 99-445 24-340 (405)
157 3meb_A Aspartate aminotransfer 99.8 1.7E-20 5.9E-25 192.7 14.1 274 101-394 51-371 (448)
158 3uwc_A Nucleotide-sugar aminot 99.8 3.7E-20 1.3E-24 184.7 16.1 282 111-446 9-312 (374)
159 3acz_A Methionine gamma-lyase; 99.8 4.7E-19 1.6E-23 178.6 23.2 276 112-444 31-329 (389)
160 1mdo_A ARNB aminotransferase; 99.8 3.6E-19 1.2E-23 178.7 22.2 277 117-446 19-329 (393)
161 3ndn_A O-succinylhomoserine su 99.8 8.9E-20 3E-24 185.6 17.9 265 133-443 73-358 (414)
162 4eb5_A Probable cysteine desul 99.8 4.1E-19 1.4E-23 177.1 21.3 293 100-445 2-317 (382)
163 3frk_A QDTB; aminotransferase, 99.8 1E-19 3.6E-24 181.7 16.5 283 111-446 6-309 (373)
164 3ecd_A Serine hydroxymethyltra 99.8 1E-18 3.6E-23 176.9 23.9 296 100-444 33-349 (425)
165 1gc0_A Methionine gamma-lyase; 99.8 4.9E-19 1.7E-23 178.9 21.2 261 135-444 59-337 (398)
166 3e9k_A Kynureninase; kynurenin 99.8 1E-19 3.4E-24 187.6 15.8 311 97-444 66-426 (465)
167 4hvk_A Probable cysteine desul 99.8 6.5E-19 2.2E-23 175.2 21.1 293 100-445 2-317 (382)
168 3lws_A Aromatic amino acid bet 99.8 4.3E-20 1.5E-24 183.1 12.4 301 99-446 3-319 (357)
169 3dr4_A Putative perosamine syn 99.8 1.5E-19 5.1E-24 181.8 16.3 278 118-446 36-337 (391)
170 3gbx_A Serine hydroxymethyltra 99.8 5.9E-20 2E-24 185.8 13.2 289 115-445 41-349 (420)
171 3a9z_A Selenocysteine lyase; P 99.8 2.1E-19 7.3E-24 182.9 16.7 293 97-417 17-352 (432)
172 2po3_A 4-dehydrase; external a 99.8 2.5E-18 8.5E-23 175.0 24.6 283 103-445 20-328 (424)
173 3h7f_A Serine hydroxymethyltra 99.8 7.4E-19 2.5E-23 180.4 20.6 298 101-444 47-366 (447)
174 3f6t_A Aspartate aminotransfer 99.8 6.3E-20 2.1E-24 192.7 12.7 210 110-340 110-330 (533)
175 3pj0_A LMO0305 protein; struct 99.8 2.8E-19 9.4E-24 177.3 15.9 291 107-446 19-321 (359)
176 3n0l_A Serine hydroxymethyltra 99.8 1.9E-18 6.5E-23 174.6 22.0 300 100-445 26-342 (417)
177 2ctz_A O-acetyl-L-homoserine s 99.8 1.6E-18 5.5E-23 176.6 21.5 257 135-442 52-364 (421)
178 7aat_A Aspartate aminotransfer 99.8 5.6E-19 1.9E-23 178.0 17.7 273 101-394 30-336 (401)
179 1b9h_A AHBA synthase, protein 99.8 3.7E-18 1.3E-22 171.2 23.0 281 117-447 16-323 (388)
180 1o69_A Aminotransferase; struc 99.8 3.8E-18 1.3E-22 172.0 22.8 287 117-446 11-331 (394)
181 1wyu_B Glycine dehydrogenase s 99.8 8E-18 2.7E-22 174.1 23.8 285 113-443 75-401 (474)
182 3b8x_A WBDK, pyridoxamine 5-ph 99.8 1.2E-17 4.3E-22 167.7 24.5 276 117-446 14-335 (390)
183 3mc6_A Sphingosine-1-phosphate 99.8 2.1E-18 7.3E-23 179.1 19.3 292 115-445 75-404 (497)
184 2bkw_A Alanine-glyoxylate amin 99.8 5.6E-18 1.9E-22 169.0 21.1 284 116-445 16-342 (385)
185 2fnu_A Aminotransferase; prote 99.8 2.9E-18 9.8E-23 170.7 18.7 277 115-444 10-313 (375)
186 3tcm_A Alanine aminotransferas 99.8 9.9E-18 3.4E-22 174.6 20.6 276 116-415 107-421 (500)
187 1jg8_A L-ALLO-threonine aldola 99.8 6.5E-18 2.2E-22 166.6 17.6 298 99-445 3-313 (347)
188 3ht4_A Aluminum resistance pro 99.8 1.8E-17 6E-22 169.4 20.7 291 116-440 36-345 (431)
189 2aeu_A Hypothetical protein MJ 99.8 7.1E-18 2.4E-22 169.1 17.5 294 98-446 26-333 (374)
190 1e5e_A MGL, methionine gamma-l 99.8 1.8E-17 6.1E-22 168.0 18.5 252 139-444 60-335 (404)
191 1pff_A Methionine gamma-lyase; 99.8 9.9E-18 3.4E-22 164.4 15.6 249 145-444 2-270 (331)
192 1qgn_A Protein (cystathionine 99.7 1.6E-16 5.6E-21 162.8 24.9 252 133-437 106-381 (445)
193 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.7 2.3E-16 7.8E-21 161.2 24.2 292 97-446 29-376 (437)
194 3ihj_A Alanine aminotransferas 99.7 2.7E-16 9.1E-21 163.7 23.7 276 116-415 102-420 (498)
195 1n8p_A Cystathionine gamma-lya 99.7 1.5E-16 5.1E-21 160.6 20.5 253 135-441 49-331 (393)
196 2c81_A Glutamine-2-deoxy-scyll 99.7 3.3E-16 1.1E-20 158.8 23.1 281 117-446 15-341 (418)
197 2qma_A Diaminobutyrate-pyruvat 99.7 6.7E-16 2.3E-20 160.5 25.6 313 96-444 98-457 (497)
198 2zy4_A L-aspartate beta-decarb 99.7 8.7E-18 3E-22 176.7 10.7 220 101-345 106-338 (546)
199 1ibj_A CBL, cystathionine beta 99.7 5E-17 1.7E-21 167.6 14.4 259 138-445 130-406 (464)
200 3ffr_A Phosphoserine aminotran 99.7 9.2E-16 3.2E-20 151.5 22.8 277 116-446 15-328 (362)
201 3cog_A Cystathionine gamma-lya 99.7 2.8E-16 9.5E-21 159.2 17.7 196 136-371 62-263 (403)
202 3k7y_A Aspartate aminotransfer 99.7 2.6E-16 9E-21 159.4 15.7 246 100-369 30-302 (405)
203 3ri6_A O-acetylhomoserine sulf 99.7 5E-15 1.7E-19 151.1 21.5 252 135-440 76-371 (430)
204 3jzl_A Putative cystathionine 99.6 2.6E-14 8.9E-19 144.8 25.3 287 116-440 30-339 (409)
205 2x3l_A ORN/Lys/Arg decarboxyla 99.6 1.3E-15 4.5E-20 156.2 13.7 255 139-444 55-320 (446)
206 2fq6_A Cystathionine beta-lyas 99.6 9.7E-15 3.3E-19 148.4 19.8 240 132-416 73-336 (415)
207 3ju7_A Putative PLP-dependent 99.6 7.3E-14 2.5E-18 140.1 24.1 284 116-447 14-319 (377)
208 2dgk_A GAD-beta, GADB, glutama 99.6 3.6E-13 1.2E-17 138.1 26.5 292 116-444 54-393 (452)
209 3hvy_A Cystathionine beta-lyas 99.6 3.5E-13 1.2E-17 137.1 25.4 284 116-439 45-355 (427)
210 2okj_A Glutamate decarboxylase 99.6 2.1E-13 7.3E-18 141.8 22.7 277 144-442 135-460 (504)
211 3i16_A Aluminum resistance pro 99.6 8.8E-13 3E-17 134.2 26.1 285 117-440 45-356 (427)
212 2jis_A Cysteine sulfinic acid 99.6 5.6E-13 1.9E-17 139.1 24.8 232 142-394 149-420 (515)
213 1w23_A Phosphoserine aminotran 99.5 6.5E-14 2.2E-18 138.4 15.7 276 116-445 14-325 (360)
214 2z67_A O-phosphoseryl-tRNA(SEC 99.5 3E-13 1E-17 139.0 20.7 265 142-441 134-406 (456)
215 1rv3_A Serine hydroxymethyltra 99.5 4.6E-13 1.6E-17 138.7 20.7 302 101-444 46-384 (483)
216 4h51_A Aspartate aminotransfer 99.5 1.2E-13 4E-18 140.4 15.7 204 118-341 65-283 (420)
217 2fyf_A PSAT, phosphoserine ami 99.5 3.8E-13 1.3E-17 135.3 17.7 276 116-446 51-362 (398)
218 2a7v_A Serine hydroxymethyltra 99.5 3.3E-13 1.1E-17 139.5 17.2 287 116-445 66-395 (490)
219 2c0r_A PSAT, phosphoserine ami 99.5 1.3E-12 4.3E-17 129.5 20.5 290 98-445 3-326 (362)
220 3bwn_A AT1G70560, L-tryptophan 99.5 5.3E-14 1.8E-18 141.6 8.7 240 144-445 71-351 (391)
221 3hbx_A GAD 1, glutamate decarb 99.5 8E-12 2.7E-16 130.0 25.0 292 115-444 67-403 (502)
222 3vp6_A Glutamate decarboxylase 99.4 3.1E-11 1.1E-15 125.8 25.0 278 145-443 139-464 (511)
223 2hox_A ALLIIN lyase 1; cystein 99.4 3.8E-13 1.3E-17 137.1 7.4 286 97-445 54-389 (427)
224 4e1o_A HDC, histidine decarbox 99.3 3.5E-10 1.2E-14 116.9 25.9 251 160-443 147-438 (481)
225 3k40_A Aromatic-L-amino-acid d 99.3 2.5E-10 8.6E-15 117.8 23.0 265 145-443 117-431 (475)
226 1js3_A DDC;, DOPA decarboxylas 99.3 9.4E-10 3.2E-14 113.6 26.8 262 145-443 117-434 (486)
227 1wyu_A Glycine dehydrogenase ( 99.2 3.4E-10 1.2E-14 115.3 19.7 279 114-443 75-400 (438)
228 2vyc_A Biodegradative arginine 99.1 1.9E-09 6.4E-14 117.2 19.8 228 141-396 205-466 (755)
229 3n75_A LDC, lysine decarboxyla 99.1 1.1E-09 3.8E-14 117.5 16.0 230 139-396 193-444 (715)
230 1c4k_A Protein (ornithine deca 99.1 2.8E-09 9.5E-14 115.1 18.0 231 139-393 171-437 (730)
231 3e77_A Phosphoserine aminotran 98.9 2.1E-08 7.1E-13 100.2 17.4 288 113-446 21-341 (377)
232 3hl2_A O-phosphoseryl-tRNA(SEC 98.8 9.1E-08 3.1E-12 96.5 17.4 252 159-441 135-400 (501)
233 3bc8_A O-phosphoseryl-tRNA(SEC 98.8 9.3E-08 3.2E-12 97.0 16.3 217 159-399 117-342 (450)
234 3m5u_A Phosphoserine aminotran 98.7 5.7E-07 2E-11 89.2 18.0 279 116-446 16-326 (361)
235 3qm2_A Phosphoserine aminotran 98.7 8.3E-08 2.8E-12 96.2 11.0 288 99-446 27-351 (386)
236 3ou5_A Serine hydroxymethyltra 97.9 0.00039 1.3E-08 69.9 16.6 182 240-445 192-395 (490)
237 3hix_A ALR3790 protein; rhodan 66.2 7.1 0.00024 30.3 4.6 53 145-199 40-92 (106)
238 1gmx_A GLPE protein; transfera 58.3 13 0.00043 28.8 4.7 54 144-200 46-99 (108)
239 2fsx_A RV0390, COG0607: rhodan 52.9 19 0.00065 29.6 5.2 42 156-199 79-120 (148)
240 2jtq_A Phage shock protein E; 52.8 39 0.0013 24.5 6.5 51 144-197 27-78 (85)
241 3ilm_A ALR3790 protein; rhodan 51.9 13 0.00043 30.6 3.9 54 145-200 44-97 (141)
242 3gk5_A Uncharacterized rhodane 50.2 14 0.00049 28.6 3.8 53 144-200 43-95 (108)
243 1tq1_A AT5G66040, senescence-a 46.2 11 0.00038 30.3 2.6 45 153-199 78-122 (129)
244 1pq4_A Periplasmic binding pro 44.9 1.6E+02 0.0056 27.1 10.9 41 241-292 224-264 (291)
245 3gi1_A LBP, laminin-binding pr 43.0 1.8E+02 0.0061 26.7 10.9 125 119-293 132-256 (286)
246 3mfq_A TROA, high-affinity zin 41.6 44 0.0015 30.9 6.3 129 119-293 114-243 (282)
247 1tks_A 3,4-dihydroxy-2-butanon 40.7 24 0.00082 31.2 4.0 35 254-292 159-193 (204)
248 2k0z_A Uncharacterized protein 39.2 70 0.0024 24.5 6.3 44 154-200 53-96 (110)
249 1k7c_A Rhamnogalacturonan acet 38.9 37 0.0013 30.1 5.2 53 240-292 111-167 (233)
250 1vee_A Proline-rich protein fa 38.6 49 0.0017 26.5 5.4 48 147-196 62-111 (134)
251 2o1e_A YCDH; alpha-beta protei 37.5 2.6E+02 0.0088 26.0 12.6 42 240-292 225-266 (312)
252 3mio_A DHBP synthase, 3,4-dihy 37.2 35 0.0012 30.2 4.5 35 254-292 158-193 (206)
253 3kp1_E D-ornithine aminomutase 37.1 5.2 0.00018 32.0 -0.8 64 369-443 15-78 (121)
254 3ij6_A Uncharacterized metal-d 35.0 2.7E+02 0.0094 25.6 14.2 54 235-294 108-161 (312)
255 3g5j_A Putative ATP/GTP bindin 33.4 32 0.0011 27.2 3.4 53 143-199 75-129 (134)
256 1wv9_A Rhodanese homolog TT165 33.1 75 0.0026 23.4 5.4 40 155-198 52-91 (94)
257 3aay_A Putative thiosulfate su 32.3 57 0.002 29.6 5.5 55 144-199 212-267 (277)
258 3cx3_A Lipoprotein; zinc-bindi 32.0 1.6E+02 0.0053 27.1 8.5 125 119-293 130-254 (284)
259 1uar_A Rhodanese; sulfurtransf 31.6 46 0.0016 30.5 4.7 54 144-198 219-273 (285)
260 1g57_A DHBP synthase, 3,4-dihy 31.4 45 0.0015 29.7 4.2 34 254-292 167-200 (217)
261 1snn_A DHBP synthase, 3,4-dihy 31.4 43 0.0015 30.0 4.1 34 254-292 178-211 (227)
262 3foj_A Uncharacterized protein 30.2 36 0.0012 25.7 3.1 41 155-198 54-94 (100)
263 3d1p_A Putative thiosulfate su 28.4 39 0.0013 27.2 3.2 42 156-199 90-131 (139)
264 3hh8_A Metal ABC transporter s 27.7 2.6E+02 0.009 25.7 9.2 124 119-292 134-259 (294)
265 1rhs_A Sulfur-substituted rhod 26.4 44 0.0015 30.9 3.6 54 144-199 226-280 (296)
266 3eme_A Rhodanese-like domain p 26.4 42 0.0014 25.4 2.8 42 155-199 54-95 (103)
267 1qxn_A SUD, sulfide dehydrogen 25.3 57 0.0019 26.3 3.6 47 154-202 79-125 (137)
268 3rjt_A Lipolytic protein G-D-S 25.0 46 0.0016 28.2 3.2 58 235-292 111-172 (216)
269 1urh_A 3-mercaptopyruvate sulf 24.9 87 0.003 28.4 5.3 53 145-199 217-270 (280)
270 1e0c_A Rhodanese, sulfurtransf 24.3 50 0.0017 29.9 3.5 53 144-198 209-262 (271)
271 2prs_A High-affinity zinc upta 24.3 3E+02 0.01 25.0 9.0 125 119-293 127-251 (284)
272 1k4i_A 3,4-dihydroxy-2-butanon 24.2 61 0.0021 29.1 3.8 35 254-292 167-211 (233)
273 3mil_A Isoamyl acetate-hydroly 24.1 1.3E+02 0.0046 25.7 6.3 18 275-292 150-167 (240)
274 2wlr_A Putative thiosulfate su 23.9 1.1E+02 0.0037 29.9 6.0 54 144-199 189-243 (423)
275 3flh_A Uncharacterized protein 23.5 43 0.0015 26.4 2.5 51 145-199 60-112 (124)
276 2o14_A Hypothetical protein YX 23.5 1.5E+02 0.0052 28.3 7.0 57 236-292 251-313 (375)
277 1ivn_A Thioesterase I; hydrola 22.9 42 0.0014 28.2 2.5 56 236-292 81-137 (190)
278 3vup_A Beta-1,4-mannanase; TIM 22.7 49 0.0017 30.3 3.1 21 277-297 92-112 (351)
279 3hzu_A Thiosulfate sulfurtrans 22.5 44 0.0015 31.4 2.7 52 144-198 247-299 (318)
280 1q57_A DNA primase/helicase; d 22.4 1.4E+02 0.0048 29.7 6.7 54 237-293 340-399 (503)
281 3d5a_X RF1, peptide chain rele 22.1 1.5E+02 0.0053 28.3 6.4 99 117-223 67-181 (354)
282 3iwh_A Rhodanese-like domain p 22.1 53 0.0018 25.2 2.7 43 154-199 53-95 (103)
283 3bzy_B ESCU; auto cleavage pro 21.5 52 0.0018 24.5 2.4 22 276-297 28-49 (83)
284 3olh_A MST, 3-mercaptopyruvate 21.5 42 0.0014 31.3 2.3 54 144-199 240-294 (302)
285 3hp4_A GDSL-esterase; psychrot 21.2 73 0.0025 26.3 3.7 55 237-292 86-141 (185)
286 3r45_C Holliday junction recog 20.8 84 0.0029 22.7 3.1 30 372-401 15-44 (81)
287 3p94_A GDSL-like lipase; serin 20.6 1.2E+02 0.0039 25.4 4.9 57 236-292 96-159 (204)
288 1vhx_A Putative holliday junct 20.6 1E+02 0.0034 25.6 4.3 55 240-298 44-101 (150)
289 3o63_A Probable thiamine-phosp 20.5 56 0.0019 29.6 2.9 19 277-295 85-103 (243)
290 1e0c_A Rhodanese, sulfurtransf 20.1 1.1E+02 0.0037 27.6 4.9 57 143-201 66-124 (271)
291 1uar_A Rhodanese; sulfurtransf 20.1 84 0.0029 28.6 4.1 57 144-202 65-123 (285)
No 1
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=100.00 E-value=3.3e-83 Score=659.13 Aligned_cols=388 Identities=31% Similarity=0.477 Sum_probs=342.6
Q ss_pred CCCCCCCHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc
Q 013235 53 PPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ 132 (447)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~ 132 (447)
.++|+|++++++++++++++++...+ .|+++++|+|+||||.|||+||||++|++++++||+||+|++|+++|++++.
T Consensus 20 t~iPGP~s~~l~~r~~~~~~~~~~~~--~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~ 97 (456)
T 4atq_A 20 GAFPGPKSQALAERRSAVVAAGVASG--VPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFT 97 (456)
T ss_dssp SSSSCHHHHHHHHHHHHHBCTTCCCS--CSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCS
T ss_pred CCCCChHHHHHHHHHHHhCCCCCCCC--CCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhcc
Confidence 35889999999999999998875543 4999999999999999999999999999999999999999999999999998
Q ss_pred ccccc-ccchHHHHHHHHHHHhCCC-CCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCC-
Q 013235 133 HSTVL-YLNHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN- 209 (447)
Q Consensus 133 ~~~~~-~~~~~~~elae~L~~~~~~-~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~- 209 (447)
|+... ++++...+|+++|.+..|. .+++|+|+||||||||.|||+||.+|+|++||+|+++|||++.+++++++...
T Consensus 98 ~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~ 177 (456)
T 4atq_A 98 HTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMP 177 (456)
T ss_dssp CCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTT
T ss_pred CcccCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccc
Confidence 86653 4578889999999999986 47889999999999999999999999999999999999999999999988653
Q ss_pred ccccccC--CCeEeecCCCCcCCCCCC-ChHHHHHHHHHHH-HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHH
Q 013235 210 WKFNVVQ--TGVHHALNPDPYRGVFGA-DGEMYAKDVQDLI-DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIK 285 (447)
Q Consensus 210 ~~~~~~~--~g~~~~~~p~~~~~~~~~-d~~~~~~~le~~i-~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~ 285 (447)
++....+ .++.++|.|++++..... +...+.+.+.+.+ ....++++||||+|||||++|+++||++||++|+++|+
T Consensus 178 ~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~ 257 (456)
T 4atq_A 178 YKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAK 257 (456)
T ss_dssp TTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHH
T ss_pred cccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHh
Confidence 3433332 678888888877654322 2222222222222 23345689999999999999999999999999999999
Q ss_pred HhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHH
Q 013235 286 KAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGH 365 (447)
Q Consensus 286 ~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaal 365 (447)
+||++||+||||||||||| ++|+++++|++|||+|+||++|||+|+|++++++++++.+....|++||+|||++|++|+
T Consensus 258 ~~gillI~DEV~tG~GRtG-~~~a~e~~gv~PDivt~gK~lggg~P~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaal 336 (456)
T 4atq_A 258 EKGIVFIADEVQSGFCRTG-EWFAVDHEGVVPDIITMAKGIAGGLPLSAITGRADLLDAVHPGGLGGTYGGNPVACAAAL 336 (456)
T ss_dssp HHTCEEEEECTTTTTTTTS-SSSGGGGTTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHH
T ss_pred hcCCceEecccccccCCcc-ccccccccCCCCchhhhhhcccCcCCceeeEecHHHHhcccccCCCCCCCCChHHHHhhH
Confidence 9999999999999999999 799999999999999999999999999999999999999988889999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc-----CCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCC
Q 013235 366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-----GIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGIC 440 (447)
Q Consensus 366 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~-----~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~G 440 (447)
++|++|+++++.+++++++++|+++|+++.+++ +++++|||.|+|++|||+++. ++.|+...+.++++.|+++|
T Consensus 337 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~-~~~~~~~~~~~v~~~~~~~G 415 (456)
T 4atq_A 337 AAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPG-SKEPNAELTKAVAAACLKEG 415 (456)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTT-SCCBCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCC-CCCcCHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999886 579999999999999998764 55678888889999999999
Q ss_pred ceee
Q 013235 441 ALFF 444 (447)
Q Consensus 441 vlv~ 444 (447)
|++.
T Consensus 416 vl~~ 419 (456)
T 4atq_A 416 VIIL 419 (456)
T ss_dssp EECE
T ss_pred CEEE
Confidence 9985
No 2
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=100.00 E-value=1.4e-79 Score=634.47 Aligned_cols=382 Identities=28% Similarity=0.427 Sum_probs=332.9
Q ss_pred HHHHHHhhhcCCccccc----cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-
Q 013235 62 EILAKRKTFLSPSLFHL----YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV- 136 (447)
Q Consensus 62 ~~~~~~~~~~~~~~~~~----~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~- 136 (447)
.+.++.++|.+..+... .+.|++|++|+|+||||.|||+||||++|++++++||+||+|++|+.+|++++.+...
T Consensus 26 ~~~~~~~~~~~h~~t~~~~~~~~~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~ 105 (473)
T 4e3q_A 26 SWEARAETYSLYGFTDMPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAF 105 (473)
T ss_dssp SHHHHHHHHBCCSSCCHHHHHHHCCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCCC
T ss_pred cHHHHHhhhcCCCCCChhhhccCCCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhccccccc
Confidence 35677788877554322 2459999999999999999999999999999999999999999999999999876433
Q ss_pred -cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCCCC
Q 013235 137 -LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSN 209 (447)
Q Consensus 137 -~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~~~ 209 (447)
.++++...+|+|+|++..|.++++|+|+||||||||.|||+||.| +++.+||+|+++|||++.+++++++...
T Consensus 106 ~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~ 185 (473)
T 4e3q_A 106 FGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPY 185 (473)
T ss_dssp TTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGG
T ss_pred ccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCcccccccccccc
Confidence 346888999999999999988999999999999999999999986 5678999999999999999999998643
Q ss_pred cc-ccccCCCeEeecCCCCcCCCCCCC-hH----HHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHH
Q 013235 210 WK-FNVVQTGVHHALNPDPYRGVFGAD-GE----MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKS 283 (447)
Q Consensus 210 ~~-~~~~~~g~~~~~~p~~~~~~~~~d-~~----~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l 283 (447)
.+ +..+.+++.+++.|+.++.....+ .+ .+.+++++.+....++++||||+|||||++|+++||++||++|+++
T Consensus 186 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~l 265 (473)
T 4e3q_A 186 NSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPI 265 (473)
T ss_dssp GGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHH
T ss_pred ccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHH
Confidence 22 223347888999988876544332 22 2456778888776678999999999999999999999999999999
Q ss_pred HHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcC-------CcccccCC
Q 013235 284 IKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR-------RNYFNTFG 355 (447)
Q Consensus 284 ~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~-------~~~~~T~~ 355 (447)
|++||++||+||||||||||| ++|+++++|++|||+|+||+|+|| +|+|++++++++++.+.. ..|++||+
T Consensus 266 c~~~gilLI~DEV~tGfGRtG-~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~ 344 (473)
T 4e3q_A 266 LRKYDIPVISDEVICGFGRTG-NTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTAS 344 (473)
T ss_dssp HHHTTCCEEEECTTTSSSTTS-SSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTT
T ss_pred hcccceEEeccCccccCCccc-chhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccCCCCC
Confidence 999999999999999999999 799999999999999999999998 899999999999987743 35889999
Q ss_pred CChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCH---HHHHHH
Q 013235 356 GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAK---AETLYI 432 (447)
Q Consensus 356 ~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~---~~~~~~ 432 (447)
|||++|++|+++|++++++++.++++++|++|+++|+++.+ ++.+++|||.|+|++||+++++.++.|.+ ....++
T Consensus 345 Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~-~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~ 423 (473)
T 4e3q_A 345 GHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAE-RPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERI 423 (473)
T ss_dssp TCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTT-STTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHH
T ss_pred CCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHhc-CCCeeEEeecceEEEEEEecCccccccccccHHHHHHH
Confidence 99999999999999999999999999999999999999864 56799999999999999998887766532 356789
Q ss_pred HHHHHhCCceeec
Q 013235 433 MDKMKGICALFFS 445 (447)
Q Consensus 433 ~~~l~~~Gvlv~~ 445 (447)
.+.|+++||++++
T Consensus 424 ~~~~~~~Gll~~~ 436 (473)
T 4e3q_A 424 ANTCTDLGLICRP 436 (473)
T ss_dssp HHHHHHTTEECEE
T ss_pred HHHHHHCCcEEEe
Confidence 9999999999864
No 3
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=100.00 E-value=7.3e-74 Score=587.55 Aligned_cols=364 Identities=24% Similarity=0.334 Sum_probs=316.0
Q ss_pred CCCHHHHHHHHhhhcCCcc----ccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc
Q 013235 57 GPSADEILAKRKTFLSPSL----FHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ 132 (447)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~ 132 (447)
.|.+++++++.+++++... ..|.+.|+++++|+|+||||+|||+||||++|++++++||+||+|++|+++|++++.
T Consensus 41 ~p~s~~~~~~a~~~~pgg~~~~~~~~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~ 120 (454)
T 4ao9_A 41 NPASQRQFEAQARYMPGANSRSVLFYAPFPLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGI 120 (454)
T ss_dssp CHHHHHHHHHHTTTSGGGCSSGGGCCSSCCCEEEEEETTEEEETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCS
T ss_pred CcHhHHHHHHHhhhCCCCCCCCccccCCCCccEEEeecCEEEECCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCC
Confidence 4678899999999985332 224456999999999999999999999999999999999999999999999999875
Q ss_pred cccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccc
Q 013235 133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF 212 (447)
Q Consensus 133 ~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~ 212 (447)
+.. .+++...+|+++|++.+|. +++|+|+|||||||+.|||+||.+|+|++||+|+++|||++.++++.+....+.+
T Consensus 121 ~~~--~~~~~~~~lae~l~~~~p~-~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~ 197 (454)
T 4ao9_A 121 NLT--GHNLLEGRLARLICERFPQ-IEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPF 197 (454)
T ss_dssp CCC--SEESSHHHHHHHHHHHSTT-CSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCS
T ss_pred Ccc--CCcHHHHHHHHHHHHhCCC-CCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCC
Confidence 533 3566778999999999985 7899999999999999999999999999999999999999998876654322211
Q ss_pred cccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235 213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (447)
Q Consensus 213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI 292 (447)
.+..++ + +| ++.+++++++. .+++|+||+|||||++|+++|+++||++|+++|++||++||
T Consensus 198 -----~~~~~p--------~-nd----~~~l~~~l~~~-~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI 258 (454)
T 4ao9_A 198 -----DFLVLP--------Y-ND----AQTARAQIERH-GPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLV 258 (454)
T ss_dssp -----EEEEEC--------T-TC----HHHHHHHHHHT-GGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEE
T ss_pred -----CcccCC--------C-ch----HHHHHHHHhhc-CCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEE
Confidence 222222 2 34 67788888765 34899999999999999999999999999999999999999
Q ss_pred EeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCC----cccccCCCChHHHHHHHHHH
Q 013235 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR----NYFNTFGGNPVCTAAGHAVL 368 (447)
Q Consensus 293 ~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~----~~~~T~~~np~a~aaala~L 368 (447)
+||||| ||+| .+|+++++|++|||+|+||+||||+|+|++++++++++.+... .|.+||+|||++|++++++|
T Consensus 259 ~DEV~t--GR~G-~~~a~e~~gv~PDi~t~gK~lggG~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L 335 (454)
T 4ao9_A 259 FDEVMT--SRLA-PHGLANKLGIRSDLTTLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGL 335 (454)
T ss_dssp EECTTG--GGGS-TTCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHH
T ss_pred EECCCc--CCCc-cccchhccCCCCcEEEeccccCCCCcceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHH
Confidence 999999 5999 7889999999999999999999999999999999999998653 37799999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCC-----CCCCHHHHHHHHHHHHhCCcee
Q 013235 369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL-----KTPAKAETLYIMDKMKGICALF 443 (447)
Q Consensus 369 ~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~-----~~p~~~~~~~~~~~l~~~Gvlv 443 (447)
++++++++++++++++++|+++|+++.++++++.+|||.|+|++++|++++.. ...+......++..|+++||++
T Consensus 336 ~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~ 415 (454)
T 4ao9_A 336 TKLFTPEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYS 415 (454)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEEC
T ss_pred HHHhccChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEE
Confidence 99999999999999999999999999999999999999999999999865422 1224455677899999999998
Q ss_pred ec
Q 013235 444 FS 445 (447)
Q Consensus 444 ~~ 445 (447)
.+
T Consensus 416 ~p 417 (454)
T 4ao9_A 416 SP 417 (454)
T ss_dssp CT
T ss_pred cC
Confidence 64
No 4
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=100.00 E-value=1e-65 Score=534.49 Aligned_cols=382 Identities=25% Similarity=0.377 Sum_probs=330.5
Q ss_pred HHHHHHHhhhcCCccccc--c--CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc
Q 013235 61 DEILAKRKTFLSPSLFHL--Y--SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV 136 (447)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~--~--~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~ 136 (447)
..+.++.+++++..+... + ..|+++++|+|+|+||.||++||||++|++++++||+||+|++|+.+|++++.+.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~ 91 (476)
T 3i5t_A 12 GAVGAAMRDHILLPAQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASP 91 (476)
T ss_dssp -CHHHHHHHHBCCTTEEGGGTTTCCCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCT
T ss_pred hHHHhhcccccccCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccc
Confidence 356677777877654321 2 258999999999999999999999999999999999999999999999999876554
Q ss_pred -cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCCCC
Q 013235 137 -LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSN 209 (447)
Q Consensus 137 -~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~~~ 209 (447)
.++++...+|+++|++.+|.+.++|+|+|||+|||+.|||+++.+ +++++||+++++|||++.+++++++...
T Consensus 92 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 171 (476)
T 3i5t_A 92 WYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTG 171 (476)
T ss_dssp TTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGG
T ss_pred CccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChh
Confidence 678999999999999999877889999999999999999999998 8999999999999999999999998776
Q ss_pred cccccc--CCCeEeecCCCCcCCCCCCChHH----HHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHH
Q 013235 210 WKFNVV--QTGVHHALNPDPYRGVFGADGEM----YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKS 283 (447)
Q Consensus 210 ~~~~~~--~~g~~~~~~p~~~~~~~~~d~~~----~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l 283 (447)
++..+. ..++.+++.|..|+. ++.|.+. ++++|++++.+..++++++||+||+++++|.++++++||++|+++
T Consensus 172 ~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~l 250 (476)
T 3i5t_A 172 NWPNFDIAQDRISFLSSPNPRHA-GNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAI 250 (476)
T ss_dssp GCTTSCCCCTTEEEECCCCGGGC-TTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHH
T ss_pred hccccCCCCCCcEEeCCCccccc-CCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHH
Confidence 554332 367888888888877 5544333 367888888755456899999999999999999999999999999
Q ss_pred HHHhCCEEEEeccccCccccCCCccccc-ccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCC-------cccccC
Q 013235 284 IKKAGGLCIADEVQAGFARTGSHFWGFE-AHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-------NYFNTF 354 (447)
Q Consensus 284 ~~~~g~llI~DEv~tGfgr~G~~~~~~~-~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~-------~~~~T~ 354 (447)
|++||++||+||||+||||+| ++|+++ ++++.|||+||||++++| +|+|++++++++++.+... .+.+||
T Consensus 251 c~~~gillI~DEv~~g~gr~G-~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~ 329 (476)
T 3i5t_A 251 CEKHDILYISDEVVTGFGRCG-EWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTY 329 (476)
T ss_dssp HHHTTCEEEEECTTTTTTTTS-SSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTT
T ss_pred HHHcCCEEEEEecccCCcccc-CceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCC
Confidence 999999999999999999999 688898 999999999999999999 8999999999999998753 567999
Q ss_pred CCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHH---HHHH
Q 013235 355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKA---ETLY 431 (447)
Q Consensus 355 ~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~---~~~~ 431 (447)
++||++|++++++|+.++++++.+++++++++++++|+++. +++.+.++||.|+|+++++.+++.++.|... ...+
T Consensus 330 ~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~ 408 (476)
T 3i5t_A 330 SNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLR-DLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLK 408 (476)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTT-TSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEecCceeEEEEecCccccccccchhHHHHH
Confidence 99999999999999999889999999999999999999764 7888999999999999999876544444322 3567
Q ss_pred HHHHHHhCCceeec
Q 013235 432 IMDKMKGICALFFS 445 (447)
Q Consensus 432 ~~~~l~~~Gvlv~~ 445 (447)
+.+.|+++||++++
T Consensus 409 ~~~~l~~~Gv~v~~ 422 (476)
T 3i5t_A 409 IDERCFELGLIVRP 422 (476)
T ss_dssp HHHHHHHTTEECEE
T ss_pred HHHHHHHCCCEEEe
Confidence 89999999999874
No 5
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=3.5e-65 Score=527.26 Aligned_cols=388 Identities=35% Similarity=0.503 Sum_probs=339.6
Q ss_pred CCCCCCHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc
Q 013235 54 PYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH 133 (447)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~ 133 (447)
..++|++++++++.++++.+... ...|+++++|+|+||||.||++||||++|++++++||+||+|++|+.+|++++.|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~G~~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~ 98 (453)
T 4ffc_A 21 PLPGPRSGALAERRRAAVSAGVG--STAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTH 98 (453)
T ss_dssp CSSCHHHHHHHHHHHHHBCTTTC--CSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSC
T ss_pred CCCCCCHHHHHHHHHHhcCCCcC--CCCCceEEeeecCEEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccc
Confidence 45678899999999999877643 2568999999999999999999999999999999999999999999999999876
Q ss_pred cc-ccccchHHHHHHHHHHHhCCCC-CceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCC-Cc
Q 013235 134 ST-VLYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NW 210 (447)
Q Consensus 134 ~~-~~~~~~~~~elae~L~~~~~~~-~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~-~~ 210 (447)
.. ..++++...+|+++|++.+|.. .++|+|+|||+|||+.|+|+++.++++++||+++++|||++.+++++++.. .+
T Consensus 99 ~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 178 (453)
T 4ffc_A 99 TCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPY 178 (453)
T ss_dssp CTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred cccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCccc
Confidence 54 3577889999999999999854 578999999999999999999999999999999999999999999998864 44
Q ss_pred cccccC--CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc-cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHh
Q 013235 211 KFNVVQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF-GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA 287 (447)
Q Consensus 211 ~~~~~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~-~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~ 287 (447)
+..+.. .++..++.|.+++.+++.+.+...+...+.+++ ..++++++||+||+|+++|.++++++||++|+++|++|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~ 258 (453)
T 4ffc_A 179 KSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASEN 258 (453)
T ss_dssp TTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH
T ss_pred ccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHc
Confidence 443322 578888988888877766643333322222222 23458999999999999999999999999999999999
Q ss_pred CCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHH
Q 013235 288 GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAV 367 (447)
Q Consensus 288 g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~ 367 (447)
|++||+||||+||||+| .+|+++++++.||++||||++++|+|+|++++++++++.+....+.+||++||+++++++++
T Consensus 259 ~~llI~DEv~~g~g~~g-~~~a~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aa 337 (453)
T 4ffc_A 259 GVVFIADEVQTGFARTG-AWFASEHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAA 337 (453)
T ss_dssp TCEEEEECTTTTTTTTS-SSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHH
T ss_pred CCEEEEecCccCCCccc-ccchhhhcCCCcchHhhhhhhcCCcCeEEEEECHHHHhhhcccCcCCCCCcCHHHHHHHHHH
Confidence 99999999999999999 68888999999999999999999999999999999999888777889999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 368 L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
|+.++++++.+++++++++++++|+++.++++.+..++|.|+|+++++.+ +.++.|+.....++.+.|+++||++.+
T Consensus 338 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~Gv~v~~ 414 (453)
T 4ffc_A 338 LGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVK-PGTLEPDAALTKSIAAEALSQGVLILT 414 (453)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBC-TTSCCBCHHHHHHHHHHHHHTTEECCE
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEec-CcccCCCHHHHHHHHHHHHhCCCEEec
Confidence 99998889999999999999999999999999999999999999999976 344556666778899999999999864
No 6
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=100.00 E-value=5e-65 Score=525.78 Aligned_cols=388 Identities=31% Similarity=0.447 Sum_probs=337.9
Q ss_pred CCCCCCHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc
Q 013235 54 PYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH 133 (447)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~ 133 (447)
..++|++++++++.++++.+.... ..|+++++|+|+||||.||++||||++|++++++||+||+|++|+.+|++++.|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~ 95 (451)
T 3oks_A 18 AIPGPRSQALIDRKGTAVARGVGT--TMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTH 95 (451)
T ss_dssp CSSCHHHHHHHHHHHHHBCTTBCC--SCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSC
T ss_pred CCCCCcHHHHHHHHHhhccCCcCC--CCCceEEEeecCEEEECCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhccc
Confidence 456788999999999998776432 468999999999999999999999999999999999999999999999998866
Q ss_pred cc-ccccchHHHHHHHHHHHhCCCC-CceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCC-Cc
Q 013235 134 ST-VLYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NW 210 (447)
Q Consensus 134 ~~-~~~~~~~~~elae~L~~~~~~~-~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~-~~ 210 (447)
.+ ..++++...+|+++|++.+|.. .++|+|+|||+|||++|+|+++.++++++||+++++|||++.+++++++.. .+
T Consensus 96 ~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~ 175 (451)
T 3oks_A 96 TCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPY 175 (451)
T ss_dssp CTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred ccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCccc
Confidence 54 3577889999999999999754 578999999999999999999999999999999999999999999998864 44
Q ss_pred cccccC--CCeEeecCCCCcCCCC-CCC----hHHHHHHHHHHHHc-cCCCCeEEEEEccccCCCceeeCCCChHHHHHH
Q 013235 211 KFNVVQ--TGVHHALNPDPYRGVF-GAD----GEMYAKDVQDLIDF-GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK 282 (447)
Q Consensus 211 ~~~~~~--~g~~~~~~p~~~~~~~-~~d----~~~~~~~le~~i~~-~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~ 282 (447)
+..+.. .++..++.|++++.++ +.| ....++.+++.+++ ..++++++||+||+|+++|+++++++||++|++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~ 255 (451)
T 3oks_A 176 KDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLD 255 (451)
T ss_dssp TTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHH
T ss_pred ccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHH
Confidence 443322 5788888887665542 222 12234555555543 234589999999999999999999999999999
Q ss_pred HHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHH
Q 013235 283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTA 362 (447)
Q Consensus 283 l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~a 362 (447)
+|++||++||+||||+||||+| .+|+++++++.||++||||++++|+|+|++++++++++.+....+.+||++||++++
T Consensus 256 l~~~~g~~lI~DEv~~g~g~~g-~~~~~~~~~~~pdi~t~sK~l~~G~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~~~a 334 (451)
T 3oks_A 256 WCRKNDVVFIADEVQTGFARTG-AMFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACA 334 (451)
T ss_dssp HHHHTTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCEEEEEEHHHHTCSCTTSBCCSSSSCHHHHH
T ss_pred HHHHcCCEEEEEecccCCCccc-cchhhhhcCCCCCeeeehhhhhCCcceEEEEECHHHHhhhcCCCcCCCCCCCHHHHH
Confidence 9999999999999999999999 688899999999999999999999999999999999998887778899999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCce
Q 013235 363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICAL 442 (447)
Q Consensus 363 aala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvl 442 (447)
+++++|+.++++++.+++++++++++++|+++..+++.+..++|.|+|+++++.+ +.++.|+.....++.+.|+++||+
T Consensus 335 aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~Gv~ 413 (451)
T 3oks_A 335 AALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVK-AGTTEPDADLTKALCAGAHAAGVI 413 (451)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBS-TTSCCBCHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEec-CccCCCCHHHHHHHHHHHHhCCcE
Confidence 9999999998889999999999999999999999999999999999999999976 344556666778899999999999
Q ss_pred eec
Q 013235 443 FFS 445 (447)
Q Consensus 443 v~~ 445 (447)
+.+
T Consensus 414 v~~ 416 (451)
T 3oks_A 414 VLS 416 (451)
T ss_dssp CEE
T ss_pred Eec
Confidence 864
No 7
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=100.00 E-value=4e-67 Score=574.22 Aligned_cols=381 Identities=18% Similarity=0.221 Sum_probs=309.8
Q ss_pred HHHHhhhcCCccccc----cCCCeEEEeecc--cEEEecCCC----eEEEecCCcccccCCCC-CHHHHHHHHHHHHhcc
Q 013235 64 LAKRKTFLSPSLFHL----YSKPLNVVDGKM--QYLFDENGR----RYLDAFGGIATVCCGHC-HPYVVDSIVNQIKRIQ 132 (447)
Q Consensus 64 ~~~~~~~~~~~~~~~----~~~p~~~~~g~G--~~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~A~~~~l~~~~ 132 (447)
.++.+++++..+... ...|++|++|+| +||||.||| +|||+++|++++++||+ ||+|++|+++|++++.
T Consensus 335 ~~~~~~~~whp~t~~~~~~~~~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~ 414 (831)
T 4a0g_A 335 AKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFG 414 (831)
T ss_dssp HHHHHHHBCCTTCCGGGCCGGGCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhhhhccCCccCcccccCCCCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhcc
Confidence 344556666543222 124889999988 499999999 99999999999999999 9999999999999998
Q ss_pred cccc-cccchHHHHHHHHHHHhCCCC-CceEEEcCCHHHHHHHHHHHH-Hhhc--------------CCCeEEEEcCCcc
Q 013235 133 HSTV-LYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMA-RLYT--------------GCNDIISLRNAYH 195 (447)
Q Consensus 133 ~~~~-~~~~~~~~elae~L~~~~~~~-~~~v~~~~sGseA~e~Aik~a-r~~t--------------~~~~ii~~~~~yH 195 (447)
|.+. .+.++...+|+++|++.+|.+ +++|||+||||||||.|||+| |.|+ +|.+||+++++||
T Consensus 415 h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syH 494 (831)
T 4a0g_A 415 HVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYH 494 (831)
T ss_dssp SCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCC
T ss_pred cccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcc
Confidence 8753 467899999999999999865 789999999999999999999 6664 4678999999999
Q ss_pred cCchhhhhccCCCCccc--------c----ccC------CCeEeecCCCCcCCCCCC-----C--------------hHH
Q 013235 196 GNAAGTMGATAQSNWKF--------N----VVQ------TGVHHALNPDPYRGVFGA-----D--------------GEM 238 (447)
Q Consensus 196 G~~~~~~~~t~~~~~~~--------~----~~~------~g~~~~~~p~~~~~~~~~-----d--------------~~~ 238 (447)
|.|.+++++++...|+. . ++. .++.+++.|+.++....+ + .+.
T Consensus 495 G~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (831)
T 4a0g_A 495 GDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARI 574 (831)
T ss_dssp CSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHH
T ss_pred cCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHH
Confidence 99999999998654433 0 000 245567777766543211 1 123
Q ss_pred HHHHHHHHHHc----cCCCCeEEEEEccc-cCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc
Q 013235 239 YAKDVQDLIDF----GTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH 313 (447)
Q Consensus 239 ~~~~le~~i~~----~~~~~~aavi~Epi-~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~ 313 (447)
|.++|+++|+. ..++++|+||+||+ ||+||++++|++||++|+++|++||++||+|||||||||+| ++|+++++
T Consensus 575 ~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG-~~fa~e~~ 653 (831)
T 4a0g_A 575 YSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLG-VETTTELL 653 (831)
T ss_dssp HHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTS-BSSTHHHH
T ss_pred HHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCC-CchhhHhc
Confidence 45778877763 23568999999997 99999999999999999999999999999999999999999 78999999
Q ss_pred CCCCCEEEeeccccCC-ccccccccCHHHHHhhcCC------cccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 013235 314 GVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR------NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSY 386 (447)
Q Consensus 314 gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~------~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~ 386 (447)
|+.|||+||||+|+|| +|+|++++++++++.+... .|++||++||++|++++++|++++++++.+++++++++
T Consensus 654 gv~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~ 733 (831)
T 4a0g_A 654 GCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKT 733 (831)
T ss_dssp SSCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSB
T ss_pred CCCCcEEEEecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999 7999999999999998753 27899999999999999999999988888888877777
Q ss_pred HHH----HHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 387 LKE----RLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 387 l~~----~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+++ .+.+...+++.+.+|||.|+|++|++++++..+.++...+.++.+.|+++||++++
T Consensus 734 l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p 796 (831)
T 4a0g_A 734 LRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRP 796 (831)
T ss_dssp BCCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC---------CHHHHHHHHHHHHTTEECCC
T ss_pred HHHHHHHHHHHHHhhCCCceeEeecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEe
Confidence 653 55555667899999999999999999876433323334567899999999999864
No 8
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=100.00 E-value=2.2e-65 Score=531.35 Aligned_cols=383 Identities=26% Similarity=0.411 Sum_probs=327.0
Q ss_pred HHHHHHHHhhhcCCccccc----cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc--
Q 013235 60 ADEILAKRKTFLSPSLFHL----YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-- 133 (447)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~----~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~-- 133 (447)
.+++.++.++++++.+... ...|+++++|+|+||||.|||+||||++|+++++|||+||+|++|+.+|++++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~ 91 (472)
T 3hmu_A 12 TAELQALDAAHHLHPFSANNALGEEGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYN 91 (472)
T ss_dssp HHHHHHHHHHHEECTTEEHHHHHHHCCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCC
T ss_pred HHHHHHHHHhhccCCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccc
Confidence 5677777888876654321 1369999999999999999999999999999999999999999999999999762
Q ss_pred ccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCC
Q 013235 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQ 207 (447)
Q Consensus 134 ~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~ 207 (447)
+...|+++...+|+++|++.+|.+.++|+|+|||+|||+.|+|+++.+ +++++||+++++|||++.+++++++.
T Consensus 92 ~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~ 171 (472)
T 3hmu_A 92 TFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGM 171 (472)
T ss_dssp SSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCC
T ss_pred cccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCC
Confidence 233678899999999999999887889999999999999999999987 47899999999999999999999886
Q ss_pred CCccccc-cCCCeEeecCCCCcC-CCCCCChHH----HHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHH
Q 013235 208 SNWKFNV-VQTGVHHALNPDPYR-GVFGADGEM----YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVY 281 (447)
Q Consensus 208 ~~~~~~~-~~~g~~~~~~p~~~~-~~~~~d~~~----~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~ 281 (447)
..++..+ ...++..++.|..|+ +.+ .|.+. ++++|++++.+..++++++||+||+||++|.++++++||++|+
T Consensus 172 ~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~ 250 (472)
T 3hmu_A 172 AGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQ 250 (472)
T ss_dssp HHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHH
T ss_pred hhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHH
Confidence 5443221 345788888777555 222 33322 3677888887554568999999999999999999999999999
Q ss_pred HHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCC--cccccCCCCh
Q 013235 282 KSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR--NYFNTFGGNP 358 (447)
Q Consensus 282 ~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~--~~~~T~~~np 358 (447)
++|++||++||+||||+||||+| ++|+++++++.||++||||++++| +|+|++++++++++.+... .+.+||++||
T Consensus 251 ~l~~~~gillI~DEv~~gfgr~G-~~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~np 329 (472)
T 3hmu_A 251 RICDKYDILLIADEVICGFGRTG-NWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHP 329 (472)
T ss_dssp HHHHHTTCEEEEECTTTTTTTTS-SSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCH
T ss_pred HHHHHcCCEEEEEccccCCcccC-ccchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhcccCCccccCCCCCCH
Confidence 99999999999999999999999 688999999999999999999987 8999999999999998433 5778999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCC----HHHHHHHH
Q 013235 359 VCTAAGHAVLKVIQKDKLQNNAH-VVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA----KAETLYIM 433 (447)
Q Consensus 359 ~a~aaala~L~~i~~~~l~~~~~-~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~----~~~~~~~~ 433 (447)
++|++++++|+.++++++.++++ +++++++++|+++. +++.+.++||.|+|+++++..+..++.|. ...+.++.
T Consensus 330 ~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 408 (472)
T 3hmu_A 330 VAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALT-DHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICR 408 (472)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGG-GSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEecCceEEEEEecCccccccccchhHHHHHHHH
Confidence 99999999999998889999999 99999999998774 58889999999999999997654433332 33467789
Q ss_pred HHHHhCCceeec
Q 013235 434 DKMKGICALFFS 445 (447)
Q Consensus 434 ~~l~~~Gvlv~~ 445 (447)
+.|+++||++++
T Consensus 409 ~~l~~~Gv~v~~ 420 (472)
T 3hmu_A 409 ERCFANNLIMRH 420 (472)
T ss_dssp HHHHHTTBCCEE
T ss_pred HHHHHCCcEEEe
Confidence 999999999875
No 9
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=100.00 E-value=7.1e-62 Score=503.28 Aligned_cols=383 Identities=28% Similarity=0.404 Sum_probs=327.4
Q ss_pred HHHHHHhhhcCCcccc---c---cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc--
Q 013235 62 EILAKRKTFLSPSLFH---L---YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-- 133 (447)
Q Consensus 62 ~~~~~~~~~~~~~~~~---~---~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~-- 133 (447)
++.+..++++++.+.. + ...|+++++|+|+||||.||++||||++|++++++||+||+|++|+.+|++++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~ 87 (460)
T 3gju_A 8 ELNAWDRDHFFHPSTHMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYH 87 (460)
T ss_dssp CHHHHHHHHCCCTTSCHHHHHHTCSCCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHhhhcccccCccccccccccCCCceEEEEeeccEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccc
Confidence 3566667777655422 1 1235999999999999999999999999999999999999999999999998753
Q ss_pred ccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCC
Q 013235 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQ 207 (447)
Q Consensus 134 ~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~ 207 (447)
+...++++...+|+++|++.++.+.++|+|+|||+|||+.|+++++.+ +++++||+++++|||.+.+++++++.
T Consensus 88 ~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~ 167 (460)
T 3gju_A 88 AYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGL 167 (460)
T ss_dssp CCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCC
T ss_pred cccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCC
Confidence 233567888999999999998878889999999999999999999987 57899999999999999999999887
Q ss_pred CCcccccc--CCCeEeecCCCCcCCCC-CCChHH----HHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHH
Q 013235 208 SNWKFNVV--QTGVHHALNPDPYRGVF-GADGEM----YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAV 280 (447)
Q Consensus 208 ~~~~~~~~--~~g~~~~~~p~~~~~~~-~~d~~~----~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l 280 (447)
..++..+. ..++..++.|..|+.+. +.+.+. ++++|++++.+..++++++||+||+++++|.++++++||++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l 247 (460)
T 3gju_A 168 DLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKI 247 (460)
T ss_dssp GGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHH
T ss_pred cccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHH
Confidence 66554332 25788888887776543 233332 357788888754456899999999999999999999999999
Q ss_pred HHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhc-------CCcccc
Q 013235 281 YKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLT-------RRNYFN 352 (447)
Q Consensus 281 ~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~-------~~~~~~ 352 (447)
+++|++||++||+||||+||||+| ++|+++++++.||++||||+|++| +|+|++++++++++.+. ...+.+
T Consensus 248 ~~l~~~~~~llI~DEv~~g~gr~g-~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~ 326 (460)
T 3gju_A 248 QAVLKKYDVLLVADEVVTGFGRLG-TMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGW 326 (460)
T ss_dssp HHHHHHTTCEEEEECTTTTTTTTS-SSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCC
T ss_pred HHHHHHcCCEEEEeccccCCCccc-ccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCC
Confidence 999999999999999999999999 688889999999999999999999 79999999999999884 235779
Q ss_pred cCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCC---CHHHH
Q 013235 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP---AKAET 429 (447)
Q Consensus 353 T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p---~~~~~ 429 (447)
||++||++|++++++|+.++++++.+++++++++++++|.+..++++.+.+++|.|+|+++++.++..++.+ ....+
T Consensus 327 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (460)
T 3gju_A 327 TYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKIG 406 (460)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEccCccccccccchHHHH
Confidence 999999999999999999988899999999999999999888888999999999999999999866543333 22346
Q ss_pred HHHHHHHHhCCceeec
Q 013235 430 LYIMDKMKGICALFFS 445 (447)
Q Consensus 430 ~~~~~~l~~~Gvlv~~ 445 (447)
.++.+.|+++||++++
T Consensus 407 ~~~~~~l~~~Gv~v~~ 422 (460)
T 3gju_A 407 PQVATALAASGVIGRA 422 (460)
T ss_dssp HHHHHHHHHTTEECEE
T ss_pred HHHHHHHHHCCeEEec
Confidence 6789999999999875
No 10
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=100.00 E-value=1.5e-61 Score=499.35 Aligned_cols=384 Identities=32% Similarity=0.497 Sum_probs=332.7
Q ss_pred CHHHHHHHHhhhcCCcccccc-CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccc
Q 013235 59 SADEILAKRKTFLSPSLFHLY-SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL 137 (447)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~ 137 (447)
.+++++++.++++++.+..+. ..|+++++|+|+||||.||++||||++|++++++||+||+|++|+.+|++++.+....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~ 87 (452)
T 3n5m_A 8 QTDELLAKDEQYVWHGMRPFSPNSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMS 87 (452)
T ss_dssp HHHHHHHHHHHHBCCTTSCSCGGGCCEEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCCCCTT
T ss_pred cHHHHHHHhhhhccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCCcccc
Confidence 356788888899887433332 4689999999999999999999999999999999999999999999999998774456
Q ss_pred ccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh---c---CCCeEEEEcCCcccCchhhhhccCCCCcc
Q 013235 138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---T---GCNDIISLRNAYHGNAAGTMGATAQSNWK 211 (447)
Q Consensus 138 ~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~---t---~~~~ii~~~~~yHG~~~~~~~~t~~~~~~ 211 (447)
++++...+|+++|++.++.+.+ |+|+|||+|||+.|+++++.+ + ++++||+++++|||.+.+++++++...++
T Consensus 88 ~~~~~~~~la~~l~~~~~~~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 166 (452)
T 3n5m_A 88 QSHEPAIKLAEKLNEWLGGEYV-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRR 166 (452)
T ss_dssp SEEHHHHHHHHHHHHHHTSCEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGT
T ss_pred cCCHHHHHHHHHHHHhCCCCce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhc
Confidence 7889999999999999987777 999999999999999999977 6 78999999999999999999998876554
Q ss_pred cccc--CCCeEeecCCCCcCCCCCCChH----HHHHHHHHHHHccCCCCeEEEEEccc-cCCCceeeCCCChHHHHHHHH
Q 013235 212 FNVV--QTGVHHALNPDPYRGVFGADGE----MYAKDVQDLIDFGTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSI 284 (447)
Q Consensus 212 ~~~~--~~g~~~~~~p~~~~~~~~~d~~----~~~~~le~~i~~~~~~~~aavi~Epi-~~~gG~~~~~~~~l~~l~~l~ 284 (447)
..+. ..++..++.|+.++.+++++.+ .++++|++.+.+..++++++||+||+ || +|.++++++||++|+++|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~ 245 (452)
T 3n5m_A 167 YQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETC 245 (452)
T ss_dssp TTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHH
T ss_pred cccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHH
Confidence 3332 2578888888888888764322 23678888886333458999999999 89 999999999999999999
Q ss_pred HHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcC----C--cccccCCCC
Q 013235 285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR----R--NYFNTFGGN 357 (447)
Q Consensus 285 ~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~----~--~~~~T~~~n 357 (447)
++||++||+||||+||||+| .+|+++++++.||++||||++++| +|+|++++++++++.+.. . .+.+||++|
T Consensus 246 ~~~~~llI~DEv~~g~g~~g-~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~ 324 (452)
T 3n5m_A 246 QKHGALLISDEVICGFGRTG-KAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGN 324 (452)
T ss_dssp HHHTCEEEEECTTTTTTTTS-SSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTC
T ss_pred HHcCCEEEEecchhCCCccc-ccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCC
Confidence 99999999999999999999 688899999999999999999999 999999999999998853 2 367999999
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCC-HHHHHHHHHHH
Q 013235 358 PVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA-KAETLYIMDKM 436 (447)
Q Consensus 358 p~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~-~~~~~~~~~~l 436 (447)
|+++++++++|+.++++++.+++++++++++++|+++.++++.+..+++.|+|+++++.++..+..+. .....++.+.|
T Consensus 325 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 404 (452)
T 3n5m_A 325 PAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNAC 404 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHH
Confidence 99999999999999888999999999999999999998889999999999999999997665444332 33456789999
Q ss_pred HhCCceeec
Q 013235 437 KGICALFFS 445 (447)
Q Consensus 437 ~~~Gvlv~~ 445 (447)
+++||++.+
T Consensus 405 ~~~Gv~~~~ 413 (452)
T 3n5m_A 405 KEKGLIIGR 413 (452)
T ss_dssp HHTTEECEE
T ss_pred HHCCcEEee
Confidence 999999874
No 11
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=100.00 E-value=9.4e-62 Score=502.12 Aligned_cols=372 Identities=23% Similarity=0.317 Sum_probs=317.7
Q ss_pred CCCHHHHHHHHhhhcCCccccc---cCCCeEEEeecccEEEec-CCC--eEEEecCCcccccCCCCCHHHHHHHHHHHHh
Q 013235 57 GPSADEILAKRKTFLSPSLFHL---YSKPLNVVDGKMQYLFDE-NGR--RYLDAFGGIATVCCGHCHPYVVDSIVNQIKR 130 (447)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~---~~~p~~~~~g~G~~l~d~-dG~--~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~ 130 (447)
+.+.++++++.++++++.+... ...|+++++|+|+|+||. ||| +||||++|++++++||+||+|++|+.+|+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~ 106 (457)
T 3tfu_A 27 GLTPEQIIAVDGAHLWHPYSSIGREAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRV 106 (457)
T ss_dssp CCCHHHHHHHHHHHBCCTTCCSSCCSSCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhcCcccccccccCCCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHh
Confidence 3456788999999988765432 345899999999999999 999 9999999999999999999999999999999
Q ss_pred ccccc-ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhh
Q 013235 131 IQHST-VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMG 203 (447)
Q Consensus 131 ~~~~~-~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~ 203 (447)
+.|.+ ..++++...+|+++|++.+|.+.++|+|+|||+|||+.|+|+++.+ +++++||+++++|||.+.++++
T Consensus 107 ~~~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~ 186 (457)
T 3tfu_A 107 MNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMS 186 (457)
T ss_dssp CSCCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHT
T ss_pred ccCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhc
Confidence 87765 4678899999999999999877889999999999999999999987 7889999999999999999999
Q ss_pred ccC-CCCcccccc--CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEcc-ccCCCceeeCCCChHHH
Q 013235 204 ATA-QSNWKFNVV--QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPA 279 (447)
Q Consensus 204 ~t~-~~~~~~~~~--~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Ep-i~~~gG~~~~~~~~l~~ 279 (447)
+++ ...++..+. ..++..++.|... + ....+++|++++++. ++++++||+|| +|+++|.++++++||++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~---~~~d~~~le~~l~~~-~~~~aavi~ep~~~~~~G~~~~~~~~l~~ 259 (457)
T 3tfu_A 187 ICDPHGGMHSLWTDVLAAQVFAPQVPRD---Y---DPAYSAAFEAQLAQH-AGELAAVVVEPVVQGAGGMRFHDPRYLHD 259 (457)
T ss_dssp TSCCC----------CCCCEEECCCCSS---C---CHHHHHHHHHHHHHH-GGGEEEEEECSSEECTTTCEECCTHHHHH
T ss_pred ccCCcccccccccCCCCCceEecCCCcc---c---CHHHHHHHHHHHHhC-CCCEEEEEEeCCCcCCCCcccCCHHHHHH
Confidence 865 333332222 2456666654321 1 112267788888643 34899999999 99999999999999999
Q ss_pred HHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhc---CC--ccccc
Q 013235 280 VYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLT---RR--NYFNT 353 (447)
Q Consensus 280 l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~---~~--~~~~T 353 (447)
|+++|++||++||+||||+||||+| .+|+++++++.||++||||+|+|| +|+|++++++++++.+. .+ .+.+|
T Consensus 260 l~~l~~~~gillI~DEv~~g~gr~G-~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t 338 (457)
T 3tfu_A 260 LRDICRRYEVLLIFDEIATGFGRTG-ALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPT 338 (457)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTTTS-SSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCT
T ss_pred HHHHHHHcCCEEEEEcCccCCcccc-chhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEecC
Confidence 9999999999999999999999999 688889999999999999999999 59999999999999884 33 57799
Q ss_pred CCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHH
Q 013235 354 FGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIM 433 (447)
Q Consensus 354 ~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~ 433 (447)
|++||++|++++++|+.++++++.+++++++++++++|+++. +++.+.++|+.|+|+++++.++. .+.++.
T Consensus 339 ~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~vr~~G~~~~i~l~~~~--------~~~~~~ 409 (457)
T 3tfu_A 339 FMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTAR-ALPAVTDVRVCGAIGVIECDRPV--------DLAVAT 409 (457)
T ss_dssp TTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGG-GSTTEEEEEECSSCEEEEESSCC--------CHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-cCCCeeeeecCCeEEEEEECCcc--------cHHHHH
Confidence 999999999999999999888999999999999999999886 67888999999999999995431 146789
Q ss_pred HHHHhCCceeec
Q 013235 434 DKMKGICALFFS 445 (447)
Q Consensus 434 ~~l~~~Gvlv~~ 445 (447)
+.|+++||++++
T Consensus 410 ~~l~~~Gv~v~~ 421 (457)
T 3tfu_A 410 PAALDRGVWLRP 421 (457)
T ss_dssp HHHHHTTEECCC
T ss_pred HHHHHCCeEEEe
Confidence 999999999864
No 12
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=100.00 E-value=6.7e-62 Score=503.35 Aligned_cols=382 Identities=25% Similarity=0.395 Sum_probs=313.1
Q ss_pred HHHHHHhhhcCCcccc---c-cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc--ccc
Q 013235 62 EILAKRKTFLSPSLFH---L-YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HST 135 (447)
Q Consensus 62 ~~~~~~~~~~~~~~~~---~-~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~--~~~ 135 (447)
++.++.+++++..+.. + ...|+++++|+|+||||.||++||||++|+++++|||+||+|++|+.+|++++. ++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~ 88 (459)
T 4a6r_A 9 QWRELDAAHHLHPFTDTASLNQAGARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTF 88 (459)
T ss_dssp -------------------------CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTT
T ss_pred HHHHHhhhhccCCccccccccccCCeeEEEeecCEEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccc
Confidence 4555556666554322 1 235899999999999999999999999999999999999999999999999875 223
Q ss_pred ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCCCC
Q 013235 136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSN 209 (447)
Q Consensus 136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~~~ 209 (447)
..++++...+|+++|++.+|.+.++|+|+|||+|||+.|+++++.+ +++++||+++++|||.+.+++++++...
T Consensus 89 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~ 168 (459)
T 4a6r_A 89 FKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKY 168 (459)
T ss_dssp SSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTT
T ss_pred cccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChh
Confidence 3577899999999999999887889999999999999999999987 4789999999999999999999988776
Q ss_pred cccccc--CCCeEeecCCCCcC-CCCCCChHH----HHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHH
Q 013235 210 WKFNVV--QTGVHHALNPDPYR-GVFGADGEM----YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK 282 (447)
Q Consensus 210 ~~~~~~--~~g~~~~~~p~~~~-~~~~~d~~~----~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~ 282 (447)
++..+. ..++..++.|..|+ +.+ .|.+. ++++|++++....++++++||+||+++++|.++++++||++|++
T Consensus 169 ~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~ 247 (459)
T 4a6r_A 169 MHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIER 247 (459)
T ss_dssp TC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHH
T ss_pred hccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHH
Confidence 654332 25788888777655 222 34332 35778888875545689999999999999999999999999999
Q ss_pred HHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhc---CCcccccCCCCh
Q 013235 283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLT---RRNYFNTFGGNP 358 (447)
Q Consensus 283 l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~---~~~~~~T~~~np 358 (447)
+|++||++||+||||+||||+| .+|+++++++.||++||||++++| +|+|++++++++++.+. ...+.+||++||
T Consensus 248 l~~~~~~llI~DEv~~g~gr~G-~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~ 326 (459)
T 4a6r_A 248 ICRKYDVLLVADEVICGFGRTG-EWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHP 326 (459)
T ss_dssp HHHHTTCEEEEECTTTTTTTTS-SSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCH
T ss_pred HHHHcCCEEEEeccccCCCccc-ccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCH
Confidence 9999999999999999999999 688889999999999999999987 89999999999999886 445778999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCC---CCHHHHHHHHH
Q 013235 359 VCTAAGHAVLKVIQKDKLQNNAH-VVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKT---PAKAETLYIMD 434 (447)
Q Consensus 359 ~a~aaala~L~~i~~~~l~~~~~-~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~---p~~~~~~~~~~ 434 (447)
++|++++++|+.++++++.++++ ++++++++.|.+...+++.+..++|.|+|+++++.++..++. |+.....++.+
T Consensus 327 ~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (459)
T 4a6r_A 327 VCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRD 406 (459)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCccccccccchHHHHHHHHH
Confidence 99999999999998889999999 999999999944446788899999999999999986654433 23445678999
Q ss_pred HHHhCCceeec
Q 013235 435 KMKGICALFFS 445 (447)
Q Consensus 435 ~l~~~Gvlv~~ 445 (447)
.|+++||++++
T Consensus 407 ~l~~~Gv~v~~ 417 (459)
T 4a6r_A 407 IFFRNNLIMRA 417 (459)
T ss_dssp HHHHTTEECEE
T ss_pred HHHHCCeEEec
Confidence 99999999875
No 13
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=100.00 E-value=3.7e-61 Score=496.14 Aligned_cols=380 Identities=27% Similarity=0.397 Sum_probs=307.4
Q ss_pred HHHHHHhhhcCCcccc---ccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccc-ccc
Q 013235 62 EILAKRKTFLSPSLFH---LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS-TVL 137 (447)
Q Consensus 62 ~~~~~~~~~~~~~~~~---~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~-~~~ 137 (447)
++.+..+++++..... +.+.|+++++|+|+||||.||++||||++|++++++||+||+|++|+.+|++++.+. ...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~ 83 (448)
T 3dod_A 4 DLIEKSKKHLWLPFTQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLG 83 (448)
T ss_dssp HHHHHHHHHBCCTTCCHHHHHHSCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCSS
T ss_pred HHHHhhhhcccccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccc
Confidence 5677778888754322 235699999999999999999999999999999999999999999999999988664 345
Q ss_pred ccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh---cC---CCeEEEEcCCcccCchhhhhccCCCCcc
Q 013235 138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TG---CNDIISLRNAYHGNAAGTMGATAQSNWK 211 (447)
Q Consensus 138 ~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~---t~---~~~ii~~~~~yHG~~~~~~~~t~~~~~~ 211 (447)
++++...+|+++|++.+|.+.++|+|+|||+|||+.|+++++.+ +| +++||+++++|||.+.+++++++...++
T Consensus 84 ~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 163 (448)
T 3dod_A 84 MTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFH 163 (448)
T ss_dssp SEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC--------------------
T ss_pred cCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCcccc
Confidence 77889999999999999877889999999999999999999988 78 8999999999999999999998866554
Q ss_pred ccccC--CCeEeecCCCCcCCCCCCChHH----HHHHHHHHHHccCCCCeEEEEEcccc-CCCceeeCCCChHHHHHHHH
Q 013235 212 FNVVQ--TGVHHALNPDPYRGVFGADGEM----YAKDVQDLIDFGTSGHVAGFLSESIQ-GVGGIIELAPGYLPAVYKSI 284 (447)
Q Consensus 212 ~~~~~--~g~~~~~~p~~~~~~~~~d~~~----~~~~le~~i~~~~~~~~aavi~Epi~-~~gG~~~~~~~~l~~l~~l~ 284 (447)
..+.+ .++..++.|+.|+.+ +.+.+. .+++|++++... ++++++||+||++ +++|.++++++||++|+++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~le~~l~~~-~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~ 241 (448)
T 3dod_A 164 HVYGPLMFESYKAPIPYVYRSE-SGDPDECRDQCLRELAQLLEEH-HEEIAALSIESMVQGASGMIVMPEGYLAGVRELC 241 (448)
T ss_dssp ---------CEEECCCCCTTSS-SCCHHHHHHHHHHHHHHHHHHH-GGGEEEEEEESSEESTTTCEECCTTHHHHHHHHH
T ss_pred ccccCCCCCceEeCCCccccCC-ccchhhhhHHHHHHHHHHHHhC-CCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHH
Confidence 43322 567888888888776 433322 267788888632 3489999999998 99999999999999999999
Q ss_pred HHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcC-------CcccccCCC
Q 013235 285 KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTR-------RNYFNTFGG 356 (447)
Q Consensus 285 ~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~-------~~~~~T~~~ 356 (447)
++||++||+||||+||||+| .+|+++++++.||++||||++++| +|+|++++++++++.+.. ..+.+||++
T Consensus 242 ~~~~~~lI~DEv~~g~g~~g-~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 320 (448)
T 3dod_A 242 TTYDVLMIVDEVATGFGRTG-KMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTG 320 (448)
T ss_dssp HHTTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTT
T ss_pred HHhCCEEEEeccccCCCccc-chhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCc
Confidence 99999999999999999999 688889999999999999999999 599999999999999876 457799999
Q ss_pred ChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHH---HHHHHH
Q 013235 357 NPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKA---ETLYIM 433 (447)
Q Consensus 357 np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~---~~~~~~ 433 (447)
||+++++++++|+.++++++.++++++++++++.|.+ ..+++.+..+++.|+|+++++.++..++.+... .+.+++
T Consensus 321 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (448)
T 3dod_A 321 NQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVS 399 (448)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHH
Confidence 9999999999999998889999999999999999999 667888999999999999999765444333221 246789
Q ss_pred HHHHhCCceeec
Q 013235 434 DKMKGICALFFS 445 (447)
Q Consensus 434 ~~l~~~Gvlv~~ 445 (447)
+.|+++||++.+
T Consensus 400 ~~l~~~Gv~~~~ 411 (448)
T 3dod_A 400 LKMRELGMLTRP 411 (448)
T ss_dssp HHHHHTTEECCE
T ss_pred HHHHHCCcEEec
Confidence 999999999864
No 14
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=1.3e-58 Score=474.74 Aligned_cols=378 Identities=26% Similarity=0.349 Sum_probs=312.0
Q ss_pred CCCHHHHHHHHhhhcCCccc---ccc-----CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHH
Q 013235 57 GPSADEILAKRKTFLSPSLF---HLY-----SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI 128 (447)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~---~~~-----~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l 128 (447)
.|++.+++++.+++++.... ..| ..|+++++|+|+|+||.||++||||+++++++++||+||+|++|+.+|+
T Consensus 5 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~ 84 (434)
T 3l44_A 5 FTKSEALHKEALEHIVGGVNSPSRSFKAVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAA 84 (434)
T ss_dssp CHHHHHHHHHHHHHBGGGCSSGGGSSGGGTCSCCCCEEEEEBTEEEETTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhhCCCCcCccccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHH
Confidence 35688999999998875431 111 4699999999999999999999999999999999999999999999999
Q ss_pred HhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCC
Q 013235 129 KRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS 208 (447)
Q Consensus 129 ~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~ 208 (447)
++.. ...|+++...+|+++|++.++ +.++|+|+|||+||++.|+++++.++++++||+++++|||.+..++..++..
T Consensus 85 ~~~~--~~~~~~~~~~~l~~~la~~~~-~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~ 161 (434)
T 3l44_A 85 ENGV--LYGTPTALEVKFAKMLKEAMP-ALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSG 161 (434)
T ss_dssp HHCS--CCSSCCHHHHHHHHHHHHHCT-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC----
T ss_pred HhCc--CCCCCCHHHHHHHHHHHHhCC-CCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCc
Confidence 8852 245778899999999999998 5789999999999999999999999999999999999999999998877643
Q ss_pred CccccccC-CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHh
Q 013235 209 NWKFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA 287 (447)
Q Consensus 209 ~~~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~ 287 (447)
......+. .++.....+.....++ +| .++|+++++.. ++++++||+||+++++|.+.++++|+++|+++|++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~-~d----~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~ 235 (434)
T 3l44_A 162 PSTLGTPDSAGVPQSIAQEVITVPF-NN----VETLKEALDKW-GHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEA 235 (434)
T ss_dssp ---CCCBSSTTCCHHHHTTEEEECT-TC----HHHHHHHHHHH-GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTT
T ss_pred ccccCCCCcCCCCCcCCCceEecCc-cc----HHHHHHHHHhC-CCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHc
Confidence 32221111 1111000011111122 23 67788877643 247999999999999999999999999999999999
Q ss_pred CCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcC---CcccccCCCChHHHHHH
Q 013235 288 GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR---RNYFNTFGGNPVCTAAG 364 (447)
Q Consensus 288 g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~---~~~~~T~~~np~a~aaa 364 (447)
|++||+||||+|| |+| .+++++++++.||++||||++++|+|+|++++++++++.+.. ..+.+||++||++++++
T Consensus 236 ~illI~DEv~~g~-~~g-~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa 313 (434)
T 3l44_A 236 GALVIYDEVITAF-RFM-YGGAQDLLGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASG 313 (434)
T ss_dssp TCEEEEECTTTTT-TSS-SSCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHH
T ss_pred CCEEEEeccccce-ecc-ccHHHHHcCCCCCeeehhhhhcCCcCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHH
Confidence 9999999999999 999 678889999999999999999999999999999999998865 23678999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCC-----CCCCHHHHHHHHHHHHhC
Q 013235 365 HAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL-----KTPAKAETLYIMDKMKGI 439 (447)
Q Consensus 365 la~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~-----~~p~~~~~~~~~~~l~~~ 439 (447)
+++|+.++++++.+++++++++++++|+++..+++.+..+++.|+|+++++.++... ..|+.....++.+.|+++
T Consensus 314 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 393 (434)
T 3l44_A 314 IACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQE 393 (434)
T ss_dssp HHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHC
Confidence 999999988899999999999999999999888888889999999999999643211 113444567889999999
Q ss_pred Cceeec
Q 013235 440 CALFFS 445 (447)
Q Consensus 440 Gvlv~~ 445 (447)
||++++
T Consensus 394 Gv~v~~ 399 (434)
T 3l44_A 394 GVNLAP 399 (434)
T ss_dssp TEECCS
T ss_pred CeEEee
Confidence 999875
No 15
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=100.00 E-value=9.7e-64 Score=515.52 Aligned_cols=364 Identities=23% Similarity=0.309 Sum_probs=309.1
Q ss_pred CCCHHHHHHHHhhhcCCcccc----ccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc
Q 013235 57 GPSADEILAKRKTFLSPSLFH----LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ 132 (447)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~ 132 (447)
.+++++++++.++++.+.... +...|+++++|+|+||||+|||+||||++|++++++||+||+|++|+.+|+++..
T Consensus 54 ~~~s~~l~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~ 133 (465)
T 2yky_A 54 NPVSAGHHERARRSMPGGNTRSILFHRPFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGL 133 (465)
Confidence 456788899999888754322 3345999999999999999999999999999999999999999999999998852
Q ss_pred cccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccc
Q 013235 133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF 212 (447)
Q Consensus 133 ~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~ 212 (447)
...|+++...+|+++|++.+| +.++|+|+|||+|||+.|+|+||.++++++||+++++|||++.+++ ++ ..
T Consensus 134 --~~~~~~~~~~~Lae~L~~~~p-~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~--sg--~~-- 204 (465)
T 2yky_A 134 --NLSTQTENEALFAEAVCDRFP-SIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFA--SG--HA-- 204 (465)
Confidence 345788899999999999998 5788999999999999999999999999999999999999999887 22 00
Q ss_pred cccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235 213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (447)
Q Consensus 213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI 292 (447)
..|+.. +....+| +| +++|++++++. ++++++||+||+++++|.++++++|+++|+++|++||++||
T Consensus 205 ---~~g~~~----~~~~~~~-~d----~~~l~~~l~~~-~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI 271 (465)
T 2yky_A 205 ---PTNAPY----HVVLGVY-ND----VEGTADLLKRH-GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLI 271 (465)
Confidence 112211 1111123 33 56777777643 35899999999999999999999999999999999999999
Q ss_pred EeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcC---C--cccccCCCChHHHHHHHHH
Q 013235 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR---R--NYFNTFGGNPVCTAAGHAV 367 (447)
Q Consensus 293 ~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~---~--~~~~T~~~np~a~aaala~ 367 (447)
+||||+ | |+| .+|+++++|+.||++||||++|+|+|+|++++++++++.+.. + .+.+||++||++|++++++
T Consensus 272 ~DEv~~-~-r~g-~~~a~~~~gv~pDi~t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aa 348 (465)
T 2yky_A 272 FDEVMT-S-RLS-GGGAQEMLGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAA 348 (465)
Confidence 999999 7 999 688889999999999999999999999999999999998876 2 3679999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCC-----CCCCCCHHHHHHHHHHHHhCCce
Q 013235 368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDR-----QLKTPAKAETLYIMDKMKGICAL 442 (447)
Q Consensus 368 L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~-----~~~~p~~~~~~~~~~~l~~~Gvl 442 (447)
|+.++++++.+++++++++|+++|+++.++++.+.+++|.|+|++++|.+++ ..+.++.....++++.|+++||+
T Consensus 349 L~~l~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~ 428 (465)
T 2yky_A 349 LTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIY 428 (465)
Confidence 9999888999999999999999999998888888899999999999997521 11223334467899999999999
Q ss_pred eec
Q 013235 443 FFS 445 (447)
Q Consensus 443 v~~ 445 (447)
+.+
T Consensus 429 v~p 431 (465)
T 2yky_A 429 LAP 431 (465)
Confidence 864
No 16
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=100.00 E-value=1.3e-58 Score=474.23 Aligned_cols=376 Identities=24% Similarity=0.333 Sum_probs=303.8
Q ss_pred CHHHHHHHHhhhcCCcccc---c----cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhc
Q 013235 59 SADEILAKRKTFLSPSLFH---L----YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI 131 (447)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~---~----~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~ 131 (447)
++.+++++.+++++.+... . ...|+++++|+|+|+||.||++||||+++++++++||+||+|++|+.+|++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~ 85 (429)
T 4e77_A 6 KSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERG 85 (429)
T ss_dssp HHHHHHHHHHHHSGGGCSSGGGGTTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhC
Confidence 5778999999998764321 1 23699999999999999999999999999999999999999999999999886
Q ss_pred ccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcc
Q 013235 132 QHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK 211 (447)
Q Consensus 132 ~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~ 211 (447)
.+ ..|+++...+|+++|++.++ +.++++|+|||+||++.|+++++.++++++||+++++|||.+..++..++.....
T Consensus 86 ~~--~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 162 (429)
T 4e77_A 86 LS--FGAPTEMEVKMAQLVTDLVP-TMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALT 162 (429)
T ss_dssp SC--CSSCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC---------------
T ss_pred cc--cCCCCHHHHHHHHHHHhhCC-CCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccc
Confidence 43 34678899999999999998 5789999999999999999999999999999999999999998776555432221
Q ss_pred ccccC-CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCE
Q 013235 212 FNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGL 290 (447)
Q Consensus 212 ~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~l 290 (447)
...+. .++.....+..++.++ +| .++|++++++. ++++++||+||+++++|.+.++++|+++|+++|++||++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~-~d----~~~le~~l~~~-~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~l 236 (429)
T 4e77_A 163 LGQPNSPGVPTDFAKHTLTCTY-ND----LASVRQAFEQY-PQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGAL 236 (429)
T ss_dssp ---CCCTTSCGGGGTTEEEECT-TC----HHHHHHHHHHS-TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCE
T ss_pred cCCCCcCCCCCccCCceeecCC-CC----HHHHHHHHHhc-CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 11111 1221111112222233 23 67788888754 347999999999999999999999999999999999999
Q ss_pred EEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCC---cccccCCCChHHHHHHHHH
Q 013235 291 CIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR---NYFNTFGGNPVCTAAGHAV 367 (447)
Q Consensus 291 lI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~---~~~~T~~~np~a~aaala~ 367 (447)
||+||||+|| |+| .+++++++++.||++||||++++|+|+|++++++++++.+... .+.+||++||+++++++++
T Consensus 237 li~DEv~~g~-r~g-~~~~~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aa 314 (429)
T 4e77_A 237 LIIDEVMTGF-RVA-LAGAQDYYHVIPDLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFAC 314 (429)
T ss_dssp EEEEETTTBT-TTB-TTCHHHHTTCCCSEEEEEGGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHH
T ss_pred EEEeccccCc-ccC-cchHHHhcCCCCCeeeecccccCCCCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHH
Confidence 9999999999 999 6888899999999999999999999999999999999988753 3678999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCC------CCCCHHHHHHHHHHHHhCCc
Q 013235 368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL------KTPAKAETLYIMDKMKGICA 441 (447)
Q Consensus 368 L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~------~~p~~~~~~~~~~~l~~~Gv 441 (447)
|+.++++++.+++++++++++++|+++..+++.+..++|.|+|+++++.++... ..++...+.++.+.|+++||
T Consensus 315 l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 394 (429)
T 4e77_A 315 LTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGV 394 (429)
T ss_dssp HHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTE
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCe
Confidence 999988899999999999999999999888888889999999999999754210 12344456789999999999
Q ss_pred eeec
Q 013235 442 LFFS 445 (447)
Q Consensus 442 lv~~ 445 (447)
++.+
T Consensus 395 ~v~~ 398 (429)
T 4e77_A 395 YLAP 398 (429)
T ss_dssp ECCS
T ss_pred EEee
Confidence 9875
No 17
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=100.00 E-value=3.8e-58 Score=470.85 Aligned_cols=377 Identities=23% Similarity=0.324 Sum_probs=313.6
Q ss_pred CCCHHHHHHHHhhhcCCccc---cc----cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHH
Q 013235 57 GPSADEILAKRKTFLSPSLF---HL----YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIK 129 (447)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~---~~----~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~ 129 (447)
.|++.+++++.+++++.... .. ...|+++++|+|+|+||.|||+||||++|+++++|||+||+|++|+.+|++
T Consensus 4 ~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~ 83 (429)
T 3k28_A 4 FDKSIAAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAE 83 (429)
T ss_dssp CHHHHHHHHHHTTTSGGGSSSGGGGCGGGTCCCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCChhhcccCCCCHHHHHHHHHHHh
Confidence 35688899999998875432 12 256999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCC
Q 013235 130 RIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN 209 (447)
Q Consensus 130 ~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~ 209 (447)
++.+ ..|+++...+|+++|++.++ +.++|+|+|||+|||+.|+++++.++++++||+++++|||.+..++..++...
T Consensus 84 ~~~~--~~~~~~~~~~l~~~la~~~~-~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~ 160 (429)
T 3k28_A 84 RGTS--FGAPTEIENKLAKLVIERVP-SIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGV 160 (429)
T ss_dssp HCSC--CSSCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC
T ss_pred hCcC--cCCCCHHHHHHHHHHHHhCC-CCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcc
Confidence 8643 35678899999999999997 57899999999999999999999999999999999999999999987776443
Q ss_pred ccccccC-CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC
Q 013235 210 WKFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG 288 (447)
Q Consensus 210 ~~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g 288 (447)
.....+. .++.....+.....++ +| .++|++++... ++++++||+||+++++|.+.++++|+++|+++|++||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~-~d----~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~ 234 (429)
T 3k28_A 161 ATLGLPDSPGVPEGVAKNTITVAY-ND----LESVKYAFEQF-GDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNG 234 (429)
T ss_dssp -----CCCTTCCHHHHTTEEEEET-TC----HHHHHHHHHHH-GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHT
T ss_pred cccCCCCcCCCCCcccCceeecCC-CC----HHHHHHHHHhC-CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcC
Confidence 2222211 1111000011111122 23 67788777643 3479999999999999999999999999999999999
Q ss_pred CEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCC---cccccCCCChHHHHHHH
Q 013235 289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR---NYFNTFGGNPVCTAAGH 365 (447)
Q Consensus 289 ~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~---~~~~T~~~np~a~aaal 365 (447)
++||+||||+|| |+| .+++++++++.||++||||++++|+|+|++++++++++.+... .+.+||++||+++++++
T Consensus 235 ~~li~DEv~~g~-~~g-~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~ 312 (429)
T 3k28_A 235 ALLIFDEVMTGF-RVA-YNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGY 312 (429)
T ss_dssp CEEEEECTTTTT-TSS-TTHHHHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHH
T ss_pred CEEEEecccccc-ccC-cchHHHHhCCCCceehhhhhhcCCCCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHH
Confidence 999999999999 999 6788899999999999999999999999999999999988642 36789999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCC-----CCCCHHHHHHHHHHHHhCC
Q 013235 366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL-----KTPAKAETLYIMDKMKGIC 440 (447)
Q Consensus 366 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~-----~~p~~~~~~~~~~~l~~~G 440 (447)
++|+.++ +++.+++++++++++++|+++..+++.+..+++.|+|+++++.++... +.|+.....++.+.|+++|
T Consensus 313 aal~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 391 (429)
T 3k28_A 313 ETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQG 391 (429)
T ss_dssp HHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCC
Confidence 9999876 789999999999999999999888998999999999999998654321 2245556678999999999
Q ss_pred ceeec
Q 013235 441 ALFFS 445 (447)
Q Consensus 441 vlv~~ 445 (447)
|++++
T Consensus 392 v~v~~ 396 (429)
T 3k28_A 392 VFLPP 396 (429)
T ss_dssp EECCS
T ss_pred eEEec
Confidence 99875
No 18
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=100.00 E-value=2.7e-57 Score=463.90 Aligned_cols=378 Identities=24% Similarity=0.344 Sum_probs=316.0
Q ss_pred CCCHHHHHHHHhhhcCCcccc---c----cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHH
Q 013235 57 GPSADEILAKRKTFLSPSLFH---L----YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIK 129 (447)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~---~----~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~ 129 (447)
.+++.+++++.++++++.... . ...|+++++|+|+|+||.||++||||++|++++++||+||+|++|+.++++
T Consensus 3 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~ 82 (427)
T 3fq8_A 3 TIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAME 82 (427)
T ss_dssp CHHHHHHHHHHTTTSGGGSSSGGGGCTTTTSCCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHhhcCCCcccccccccccCCCCceEEEeeeCEEEECCCCEEEECCCchhhhccCCCCHHHHHHHHHHHH
Confidence 356788999999988765432 1 256999999999999999999999999999999999999999999999998
Q ss_pred hcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCC
Q 013235 130 RIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN 209 (447)
Q Consensus 130 ~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~ 209 (447)
++.+ ..++++...+|+++|++.++ +.++|+|+|||+||++.|+|+++.++++++||+++++|||.+..++..++...
T Consensus 83 ~~~~--~~~~~~~~~~la~~l~~~~~-~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~ 159 (427)
T 3fq8_A 83 KGTS--FGAPCALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGV 159 (427)
T ss_dssp TCSC--CSSCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHH
T ss_pred hCCC--cCCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcc
Confidence 8754 23478889999999999997 57899999999999999999999999999999999999999998887765432
Q ss_pred ccccccC-CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC
Q 013235 210 WKFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG 288 (447)
Q Consensus 210 ~~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g 288 (447)
.....+. .++.....++....++ +| .++|+++++.. ++++++||+||+++++|.+.++++|+++|+++|++||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~-~d----~~~le~~l~~~-~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~ 233 (427)
T 3fq8_A 160 ATLGLPSSPGVPKKTTANTLTTPY-ND----LEAVKALFAEN-PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHD 233 (427)
T ss_dssp HHHTCCSCSSSCHHHHTTEEEEET-TC----HHHHHHHHHHS-TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTT
T ss_pred cccCCCCCCCCCCcccCceeecCC-CC----HHHHHHHHHhC-CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 2111111 1221100011111122 24 67888888754 4589999999999999999999999999999999999
Q ss_pred CEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCC---cccccCCCChHHHHHHH
Q 013235 289 GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR---NYFNTFGGNPVCTAAGH 365 (447)
Q Consensus 289 ~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~---~~~~T~~~np~a~aaal 365 (447)
++||+||||+|| |+| .+++.+++++.||+++|||++++|+|+|++++++++++.+... .+.+||++||+++++++
T Consensus 234 ~~li~DEv~~g~-~~g-~~~~~~~~~~~~di~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~ 311 (427)
T 3fq8_A 234 ALLVFDEVITGF-RIA-YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGI 311 (427)
T ss_dssp CEEEEECTTTBT-TTB-TTHHHHHTTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHH
T ss_pred CEEEEecccccc-ccC-cchhhHhcCCCCChhhhhhhhhCCcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHH
Confidence 999999999999 999 6778889999999999999999999999999999999988652 36789999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCC-----CCCCHHHHHHHHHHHHhCC
Q 013235 366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQL-----KTPAKAETLYIMDKMKGIC 440 (447)
Q Consensus 366 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~-----~~p~~~~~~~~~~~l~~~G 440 (447)
++|+.++++++.+++++++++++++|+++..+++.+..+++.|+|+++++.++... ..++.....++.+.|+++|
T Consensus 312 aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 391 (427)
T 3fq8_A 312 KTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQG 391 (427)
T ss_dssp HHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCC
Confidence 99999988899999999999999999999888888888999999999998654321 2345555678999999999
Q ss_pred ceeec
Q 013235 441 ALFFS 445 (447)
Q Consensus 441 vlv~~ 445 (447)
|++++
T Consensus 392 i~v~~ 396 (427)
T 3fq8_A 392 IYLAP 396 (427)
T ss_dssp EECCS
T ss_pred cEEec
Confidence 99875
No 19
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=100.00 E-value=1.6e-56 Score=459.87 Aligned_cols=359 Identities=26% Similarity=0.439 Sum_probs=292.9
Q ss_pred CCHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccc
Q 013235 58 PSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVL 137 (447)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~ 137 (447)
+++++++++.++++.+. +...|+++++|+|+|+||.||++||||.+|++.+++||+||+|++|+.+|++++.+.+..
T Consensus 27 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~~~ 103 (433)
T 1z7d_A 27 KTPEDYINNELKYGAHN---YDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRA 103 (433)
T ss_dssp CCHHHHHHHHHHHBCCC---CCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTT
T ss_pred ccHHHHHHHHHHhcccc---cCCCCceEEeeecCEEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCccCC
Confidence 45778888888887654 334588999999999999999999999999999999999999999999999987665556
Q ss_pred ccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh--------cCCCeEEEEcCCcccCchhhhhccCCCC
Q 013235 138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNAYHGNAAGTMGATAQSN 209 (447)
Q Consensus 138 ~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~--------t~~~~ii~~~~~yHG~~~~~~~~t~~~~ 209 (447)
|+++...+|+++|++.++ .++|+|+|||+|||+.|+++++.+ +++++||+++++|||.+..++++++...
T Consensus 104 ~~~~~~~~l~~~la~~~g--~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~ 181 (433)
T 1z7d_A 104 FFSVPLGICERYLTNLLG--YDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKK 181 (433)
T ss_dssp SEEHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC----------------
T ss_pred cCCHHHHHHHHHHHhhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCcc
Confidence 778889999999999984 678999999999999999999864 2568999999999999998887766433
Q ss_pred ccccccC--CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHh
Q 013235 210 WKFNVVQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA 287 (447)
Q Consensus 210 ~~~~~~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~ 287 (447)
++..+.+ .++..++. +| +++|+++++ .+++++||+||+++++|.++++++++++|+++|++|
T Consensus 182 ~~~~~~p~~~~v~~~~~---------~d----~~~le~~l~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~ 245 (433)
T 1z7d_A 182 CTSNFGPFAPQFSKVPY---------DD----LEALEEELK---DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKY 245 (433)
T ss_dssp ----------CEEEECT---------TC----HHHHHHHHT---STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT
T ss_pred ccccCCCCCCCeEEeCC---------CC----HHHHHHHhC---CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHc
Confidence 3322111 24444432 23 677888885 237899999999999999999999999999999999
Q ss_pred CCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCCcccccCCCChHHHHHHHH
Q 013235 288 GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHA 366 (447)
Q Consensus 288 g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala 366 (447)
|++||+||||+||||+| .+++++++++.||++||||++++| +|+|++++++++++.+....+.+||++||++++++++
T Consensus 246 g~llI~DEv~~g~g~~g-~~~~~~~~~~~~di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a 324 (433)
T 1z7d_A 246 NVLFVADEVQTGLGRTG-KLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVE 324 (433)
T ss_dssp TCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHH
T ss_pred CCEEEEecCccCCCcCC-cchhhHhcCCCCCEEEECccccCCCCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHH
Confidence 99999999999999999 688889999999999999999999 8999999999999888766678999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 367 ~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+|+.++++++.+++++++++|+++|+++.++++.+..+++.|+|+++++.++. . ...++.+.|+++||++.+
T Consensus 325 al~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~----~---~~~~~~~~l~~~Gv~v~~ 396 (433)
T 1z7d_A 325 ALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL----V---NVLDICLKLKENGLITRD 396 (433)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT----C---CHHHHHHHHHHTTEECCE
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccCh----h---HHHHHHHHHHHCCeEEec
Confidence 99999888899999999999999999987678888889999999999995321 0 145788999999999864
No 20
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=100.00 E-value=3.4e-56 Score=457.36 Aligned_cols=378 Identities=29% Similarity=0.429 Sum_probs=319.3
Q ss_pred HHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccc-cccc
Q 013235 61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST-VLYL 139 (447)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~-~~~~ 139 (447)
++++++.++++.+.... ..|+++++|+|+|+||.+|++||||++|++++++||+||+|.+|+.++++++.+.+ ..++
T Consensus 7 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~ 84 (439)
T 3dxv_A 7 ALYDRDGAAIGNLQKLR--FFPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSAS 84 (439)
T ss_dssp CHHHHHHHHBCGGGCCC--SSCCEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSCSSSSE
T ss_pred HHHHHHHHHhccCccCC--CCCceEEEeeeCEEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccccccC
Confidence 46778888877665433 26899999999999999999999999999999999999999999999999876544 4577
Q ss_pred chHHHHHHHHHHHhCCCCC-ceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCC--ccccccC
Q 013235 140 NHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSN--WKFNVVQ 216 (447)
Q Consensus 140 ~~~~~elae~L~~~~~~~~-~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~--~~~~~~~ 216 (447)
++...+++++|++.++.+. ++++|++||+||++.|+++++.++++++||+++++|||.+..++.+++... ++..+..
T Consensus 85 ~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 164 (439)
T 3dxv_A 85 NAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADG 164 (439)
T ss_dssp EHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------C
T ss_pred CHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCC
Confidence 8899999999999998666 799999999999999999999888999999999999999999998877543 4332221
Q ss_pred --CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEe
Q 013235 217 --TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD 294 (447)
Q Consensus 217 --~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~D 294 (447)
.++..++.++.+.+. +.+..+++|++++....++++++||+||+++++|.+.++++|+++|+++|++||++||+|
T Consensus 165 ~~~~~~~~~~~~~~~~~---~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D 241 (439)
T 3dxv_A 165 LILLPYPDPYRPYRNDP---TGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCD 241 (439)
T ss_dssp EEEECCCCSSSCBTTBT---TSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCcEEcCCCcccccc---cHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 233444444332211 111136788888853335689999999999999999999999999999999999999999
Q ss_pred ccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhh
Q 013235 295 EVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD 374 (447)
Q Consensus 295 Ev~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~ 374 (447)
|||+||||+| .+++++++++.||+++|||++++|+|+|++++++++++.+....+.+|| +||+++++++++|+.++++
T Consensus 242 E~~~g~g~~g-~~~~~~~~~~~~di~s~sK~~~~G~riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~~ 319 (439)
T 3dxv_A 242 EVKVGLARSG-RLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLAVLETIDRD 319 (439)
T ss_dssp CTTTCTTTTS-SSSGGGGTTCCCSEEEECGGGGTTSCCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHHT
T ss_pred ccccCCCcCc-hhhHHHhcCCCCCEEEEcchhcCCcceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHhc
Confidence 9999999999 6788899999999999999999999999999999999988876778999 9999999999999999888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 375 KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 375 ~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
++.++++++++++++.|.++..+++.+..+++.|+|+++++.++..++.|+.....++.+.|+++||++.+
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~ 390 (439)
T 3dxv_A 320 DLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYY 390 (439)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEee
Confidence 99999999999999999999888998999999999999999876655566666678899999999999864
No 21
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=100.00 E-value=3e-56 Score=458.67 Aligned_cols=359 Identities=26% Similarity=0.449 Sum_probs=305.8
Q ss_pred CCCHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc
Q 013235 57 GPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV 136 (447)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~ 136 (447)
.+++++++++..+++.+. +...|+++++|+|+|+||.||++||||.+|++++++||+||+|++|+.+|++++.+.+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~ 113 (439)
T 2oat_A 37 PPTSDDIFEREYKYGAHN---YHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSR 113 (439)
T ss_dssp CCCHHHHHHHHHHHBCCC---CCCCSCEEEEEEBTEEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCT
T ss_pred CCCHHHHHHHHHHhcccc---cCCCCeeEEeeecCEEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccC
Confidence 456788888888887665 33468999999999999999999999999999999999999999999999998766555
Q ss_pred cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh--------cCCCeEEEEcCCcccCchhhhhccCCC
Q 013235 137 LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNAYHGNAAGTMGATAQS 208 (447)
Q Consensus 137 ~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~--------t~~~~ii~~~~~yHG~~~~~~~~t~~~ 208 (447)
.|+++...+++++|++.++ .++|+|+|||+||++.|+++++.+ +++++||+++++|||.+..++++++..
T Consensus 114 ~~~~~~~~~l~~~la~~~g--~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~ 191 (439)
T 2oat_A 114 AFYNNVLGEYEEYITKLFN--YHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDP 191 (439)
T ss_dssp TSEESSHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCH
T ss_pred ccCCHHHHHHHHHHHHhcC--CCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCCh
Confidence 5677888999999999884 678999999999999999999864 255899999999999999888876643
Q ss_pred CccccccC--CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHH
Q 013235 209 NWKFNVVQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK 286 (447)
Q Consensus 209 ~~~~~~~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~ 286 (447)
.++..+.+ .++..++. +| +++|++.++ .+++++||+||+++++|.++++++++++|+++|++
T Consensus 192 ~~~~~~~p~~~~v~~~~~---------~d----~~~le~~l~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~ 255 (439)
T 2oat_A 192 TSYDGFGPFMPGFDIIPY---------ND----LPALERALQ---DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTR 255 (439)
T ss_dssp HHHTTSCSCCTTEEEECS---------SC----HHHHHHHTT---STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH
T ss_pred hcccCCCCCCCCeEEeCC---------CC----HHHHHHHhC---CCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHH
Confidence 22222111 34444443 23 677888775 23789999999999999999999999999999999
Q ss_pred hCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCCcccccCCCChHHHHHHH
Q 013235 287 AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGH 365 (447)
Q Consensus 287 ~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaal 365 (447)
||++||+||||+||||+| .+|+++++++.||+++|||++++| +|+|++++++++++.+....+.+||++||++++++.
T Consensus 256 ~gillI~DEv~~g~g~~g-~~~~~~~~~~~~Di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~ 334 (439)
T 2oat_A 256 HQVLFIADEIQTGLARTG-RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAI 334 (439)
T ss_dssp TTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHH
T ss_pred cCCEEEEeccccCCccCC-cchhHHHhCCCCcEEEecccccCCCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHH
Confidence 999999999999999999 688889999999999999999999 899999999999988876667899999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 366 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
++|+.++++++.+++++++++|+++|+++ .++.+..+++.|+|+++++.++.. . ...++.+.|+++||++.+
T Consensus 335 aal~~~~~~~~~~~~~~~~~~l~~~L~~l--~~~~~~~~~~~g~~~~v~l~~~~~---~---~~~~l~~~l~~~Gv~v~~ 406 (439)
T 2oat_A 335 AALEVLEEENLAENADKLGIILRNELMKL--PSDVVTAVRGKGLLNAIVIKETKD---W---DAWKVCLRLRDNGLLAKP 406 (439)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHTTS--CTTTEEEEEEETTEEEEEECCCSS---C---CHHHHHHHHHHTTEECCB
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHh--cCCCcEEEEeeeeEEEEEEecCcc---H---HHHHHHHHHHHCCeEEec
Confidence 99999988889999999999999999887 467788899999999999964310 1 145788999999999864
No 22
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=100.00 E-value=2.8e-56 Score=457.02 Aligned_cols=384 Identities=33% Similarity=0.508 Sum_probs=321.9
Q ss_pred CHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc
Q 013235 59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY 138 (447)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~ 138 (447)
++.+++++.++++.+....+ .|+++++++|+++||.+|++||||.++.+++++||+||+|.+|+.+++++..+.+..|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~ 82 (433)
T 1zod_A 5 DDATFWRNARHHLVRYGGTF--EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEM 82 (433)
T ss_dssp TCHHHHHHHHHHCCCCSSCC--CSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTC
T ss_pred hhHHHHHHHHHhhccccccc--CCceEEEeecCEEEeCCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCccccccc
Confidence 34677888777776643322 5889999999999999999999999999999999999999999999998876555567
Q ss_pred cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc-CC
Q 013235 139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV-QT 217 (447)
Q Consensus 139 ~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~-~~ 217 (447)
+++...+++++|++.++.+.++|+|++||+||++.|+++++.++++++||+++++|||.+..++++++...+..-.+ ..
T Consensus 83 ~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 162 (433)
T 1zod_A 83 LSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAV 162 (433)
T ss_dssp CCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCT
T ss_pred CCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCC
Confidence 78888999999999998767899999999999999999998878888999999999999999998876542221111 25
Q ss_pred CeEeecCCCCcCCCCCCC----hHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEE
Q 013235 218 GVHHALNPDPYRGVFGAD----GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293 (447)
Q Consensus 218 g~~~~~~p~~~~~~~~~d----~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~ 293 (447)
++..++.|..++.+|+.+ ....+++|++.+.+..++++++||+||+++++|.++++++|+++|+++|++||++||+
T Consensus 163 ~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 242 (433)
T 1zod_A 163 GSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLIL 242 (433)
T ss_dssp TEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEE
T ss_pred CceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Confidence 788888887777666431 1123677888886533357899999999999999999999999999999999999999
Q ss_pred eccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCc--ccccCCCChHHHHHHHHHHHHH
Q 013235 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVI 371 (447)
Q Consensus 294 DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~--~~~T~~~np~a~aaala~L~~i 371 (447)
||||+||||+| .+++++++++.||+++|||++++|+|+|++++++++++.+.... +.+||++||++++++.++|+.+
T Consensus 243 DEv~~~~g~~g-~~~~~~~~~~~~di~s~sK~~~~G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~ 321 (433)
T 1zod_A 243 DEAQTGVGRTG-TMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVV 321 (433)
T ss_dssp ECTTTTTTTTS-SSSTHHHHTCCCSEEEECHHHHTTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHH
T ss_pred eccccCCCcCc-hHhHHhhcCCCCCEEEecccccCCCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 99999999999 67777888999999999999999999999999999998886533 3489999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 372 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+++++.+++++++++++++|+++..+++.+..+++.|+|+++++.++..+..++.....++.+.|+++||++.+
T Consensus 322 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~ 395 (433)
T 1zod_A 322 QRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNI 395 (433)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCE
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEec
Confidence 88889999999999999999998777888888999999999999754222222222356788999999999864
No 23
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=100.00 E-value=4e-56 Score=455.58 Aligned_cols=360 Identities=27% Similarity=0.410 Sum_probs=291.9
Q ss_pred cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-cccchHHHHHHHHHHHhCCCC
Q 013235 79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGN 157 (447)
Q Consensus 79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~~~~~~elae~L~~~~~~~ 157 (447)
.+.|+++++|+|+|+||.||++||||+++++++++||+||+|++|+.++++.+.+.+. .|+++...+++++|++.++.+
T Consensus 9 ~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~ 88 (430)
T 3i4j_A 9 SKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLP 88 (430)
T ss_dssp SSCCCEEEEEEBTEEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCT
T ss_pred CCCCceEEeeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCC
Confidence 4568999999999999999999999999999999999999999999999998765443 678889999999999999877
Q ss_pred CceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCCCCccccccC--C--CeEeecCCCC
Q 013235 158 LKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--T--GVHHALNPDP 227 (447)
Q Consensus 158 ~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~--~--g~~~~~~p~~ 227 (447)
.++|+|+|||+||++.|+++++.+ +++++||+++++|||.+..++++++...++..... . ++..++.++.
T Consensus 89 ~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (430)
T 3i4j_A 89 TFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDP 168 (430)
T ss_dssp TCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCT
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcc
Confidence 889999999999999999999887 78899999999999999998888775444332211 2 5556665554
Q ss_pred cCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccC-CCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCC
Q 013235 228 YRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQG-VGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH 306 (447)
Q Consensus 228 ~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~-~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~ 306 (447)
+++ ....+++|+++++...++++++||+||++| ++|.+.++++|+++|+++|++||++||+||||+||||+| .
T Consensus 169 ~~~-----~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g-~ 242 (430)
T 3i4j_A 169 ARN-----GAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCG-S 242 (430)
T ss_dssp TSC-----HHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS-S
T ss_pred cch-----hhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc-c
Confidence 432 222357788888754445899999999999 999999999999999999999999999999999999999 6
Q ss_pred ccccccc-CCCCCEEEeeccccCC-ccccccccCHHHHHhhcCC----cccccCCCChHHHHHHHHHHHHHhhhhHHHHH
Q 013235 307 FWGFEAH-GVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR----NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNA 380 (447)
Q Consensus 307 ~~~~~~~-gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~----~~~~T~~~np~a~aaala~L~~i~~~~l~~~~ 380 (447)
+++++++ ++.||++||||++++| +|+|++++++++++.+... .+.+||++||+++++++++|+.++++++.+++
T Consensus 243 ~~~~~~~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~ 322 (430)
T 3i4j_A 243 PLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAA 322 (430)
T ss_dssp SSGGGGTTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred hhhhhhhcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHH
Confidence 8888999 9999999999999999 9999999999999988753 57799999999999999999999888999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCC--HHHHHHHHHHHHhCCceeec
Q 013235 381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA--KAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 381 ~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~--~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+++++++++.|.++.++++.+..+++.|+|+++++.+ ..++.+. +..+.++.+.|+++||++.+
T Consensus 323 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~ 388 (430)
T 3i4j_A 323 KERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGD-LATGQAFETPGIASRIGAAALKRGLITYP 388 (430)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC-------------CHHHHHHHHHHTTEECC-
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEecc-ccccCCCccHHHHHHHHHHHHhCCCEEEe
Confidence 9999999999999988899899999999999999963 2222121 12246789999999999875
No 24
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=100.00 E-value=3.6e-56 Score=462.16 Aligned_cols=372 Identities=23% Similarity=0.329 Sum_probs=292.7
Q ss_pred CCCCCHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhc--c
Q 013235 55 YDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI--Q 132 (447)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~--~ 132 (447)
.++|++++++++..+++.+. ..+.|+.+++|+|+||||.|||+||||++|+++++|||+||+|++|+.+|+... .
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~ 98 (472)
T 1ohv_A 22 VPGPRSRELMKQLNIIQNAE---AVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFI 98 (472)
T ss_dssp SSCHHHHHHHHHHHHHSCCT---TCCCCBCGGGCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHH
T ss_pred CCCccHHHHHHHHHhhhccc---cccCCceEEEEEcCEEEeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccc
Confidence 44567888888888887443 223467789999999999999999999999999999999999999999987643 2
Q ss_pred cccccc---cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh-----------c-------------C--
Q 013235 133 HSTVLY---LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY-----------T-------------G-- 183 (447)
Q Consensus 133 ~~~~~~---~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~-----------t-------------~-- 183 (447)
+.+..+ ..+...+++++|++.++.+.++|+|+|||+|||+.|||+|+.+ | |
T Consensus 99 ~~~~~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~ 178 (472)
T 1ohv_A 99 NRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCP 178 (472)
T ss_dssp CCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSC
T ss_pred cccccccccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCC
Confidence 322111 2344555666666677767889999999999999999999754 1 4
Q ss_pred CCeEEEEcCCcccCchhhhhccCCCCc-cccccCCCeEeecCCCCcCCCCCCCh-------HHHHHHHHHHHHccCC--C
Q 013235 184 CNDIISLRNAYHGNAAGTMGATAQSNW-KFNVVQTGVHHALNPDPYRGVFGADG-------EMYAKDVQDLIDFGTS--G 253 (447)
Q Consensus 184 ~~~ii~~~~~yHG~~~~~~~~t~~~~~-~~~~~~~g~~~~~~p~~~~~~~~~d~-------~~~~~~le~~i~~~~~--~ 253 (447)
+++||+++++|||++.+++++++...+ ....+..++.++++|. ++.++..+. ...+++|++++....+ .
T Consensus 179 r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~ 257 (472)
T 1ohv_A 179 DYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPR-LKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKK 257 (472)
T ss_dssp CCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCC-CCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCc-ccCccccccccchhHHHHHHHHHHHHHHhcCCCCC
Confidence 589999999999999999999875433 1122223444455542 332221110 1136778888764211 2
Q ss_pred CeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCC--CCEEEeecc-ccCCc
Q 013235 254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVV--PDIVTMAKG-IGNGI 330 (447)
Q Consensus 254 ~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~--pDivt~sK~-lg~G~ 330 (447)
++++||+||+++++|.++++++||++|+++|++||++||+||||+||||+| .+|+++++|+. ||++||||+ ++||+
T Consensus 258 ~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g-~~~~~~~~gv~~~~Di~t~sK~~l~GG~ 336 (472)
T 1ohv_A 258 TVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTG-KFWAHEHWGLDDPADVMTFSKKMMTGGF 336 (472)
T ss_dssp CEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS-SSSGGGGGCCSSCCSEEEECGGGSSEEE
T ss_pred CEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCC-CchhccccCCCCCCCEEEEccccccCCc
Confidence 789999999999999999999999999999999999999999999999999 68889999987 999999999 78877
Q ss_pred cccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC-CeeeEeecce
Q 013235 331 PLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG-IIGDVRGRGF 409 (447)
Q Consensus 331 pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~i~~vrg~Gl 409 (447)
++ ++++. .+....+++||++||+++++++++|+.++++++.+++++++++|+++|+++..+++ .+..+++.|+
T Consensus 337 ~~-----~~~~~-~~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~ 410 (472)
T 1ohv_A 337 FH-----KEEFR-PNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGT 410 (472)
T ss_dssp EE-----CGGGS-CSSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETT
T ss_pred cC-----chhhc-ccccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCce
Confidence 53 55542 23334577999999999999999999998888999999999999999999877787 4888999999
Q ss_pred eEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 410 LLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 410 ~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
|+++++.+ .....++++.|+++||++.+
T Consensus 411 ~~~~~~~~--------~~~~~~~~~~l~~~Gv~~~~ 438 (472)
T 1ohv_A 411 FCSFDTPD--------ESIRNKLISIARNKGVMLGG 438 (472)
T ss_dssp EEEEECSS--------HHHHHHHHHHHHHTTEECEE
T ss_pred EEEEEeCC--------hhHHHHHHHHHHHCCeEEec
Confidence 99998732 22456799999999999864
No 25
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=100.00 E-value=5.8e-56 Score=455.13 Aligned_cols=379 Identities=23% Similarity=0.329 Sum_probs=307.2
Q ss_pred CCCCHHHHHHHHhhhcCCcccc----c-cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHh
Q 013235 56 DGPSADEILAKRKTFLSPSLFH----L-YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR 130 (447)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~----~-~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~ 130 (447)
++|++++++++.++++.+.... + ...|+++++|+|+|+||.||++||||.+|++++++||+||+|.+|+.+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~ 87 (434)
T 2epj_A 8 SGEKSRMLFERTKELFPGGVNSPVRAAVKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALAR 87 (434)
T ss_dssp -CHHHHHHHHHHTTTSGGGSSSGGGGGCSSSCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT
T ss_pred CCcchHHHHHHHHhhcCCCcCcccccccCCCCeeEEeeecCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHh
Confidence 4567889999999988654321 2 3459999999999999999999999999999999999999999999999988
Q ss_pred cccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCc
Q 013235 131 IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW 210 (447)
Q Consensus 131 ~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~ 210 (447)
..+ ..|+++...+++++|++.++ +.++|+|+|||+||+++|+++||.++++++||+++++|||.+..+++.++....
T Consensus 88 ~~~--~~~~~~~~~~l~~~la~~~~-~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 164 (434)
T 2epj_A 88 GWL--YGAPGEAEVLLAEKILGYVK-RGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAA 164 (434)
T ss_dssp CSC--CSSCCHHHHHHHHHHHHHHC-TTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC----
T ss_pred CCC--CCCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCcc
Confidence 532 34678889999999999987 578899999999999999999998899999999999999999988876653222
Q ss_pred cccccC-CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCC
Q 013235 211 KFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG 289 (447)
Q Consensus 211 ~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~ 289 (447)
.+..+. .++.....++.+..++ +| +++|++.+++. ++++++||+||+++++|.++++++|+++|+++|++||+
T Consensus 165 ~~~~p~~~g~~~~~~~~~~~~~~-~d----~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~ 238 (434)
T 2epj_A 165 HYGVPTSAGVPEAVARLTLVTPY-ND----VEALERVFAEY-GDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGA 238 (434)
T ss_dssp --CEESSTTCCHHHHTTEEEEET-TC----HHHHHHHHHHH-GGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTC
T ss_pred ccCCCCCCCCCCcccCceEecCC-CC----HHHHHHHHHhC-CCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCC
Confidence 211111 1221000001111122 24 56788777643 24789999999999999999999999999999999999
Q ss_pred EEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcC-C--cccccCCCChHHHHHHHH
Q 013235 290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR-R--NYFNTFGGNPVCTAAGHA 366 (447)
Q Consensus 290 llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~-~--~~~~T~~~np~a~aaala 366 (447)
+||+||||+|| |+| .+++++++++.||+++|||++++|+|+|++++++++++.+.. . .+.+||++||++++++.+
T Consensus 239 ~lI~DEv~~g~-~~g-~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a 316 (434)
T 2epj_A 239 LLILDEVVTGF-RLG-LEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLA 316 (434)
T ss_dssp EEEEEETTTTT-TSS-TTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHH
T ss_pred EEEEEcchhce-eCC-cchhhHHhCCCCCeeeecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHH
Confidence 99999999999 888 577778899999999999999999999999999999988765 2 256899999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCC-----CCCCCHHHHHHHHHHHHhCCc
Q 013235 367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ-----LKTPAKAETLYIMDKMKGICA 441 (447)
Q Consensus 367 ~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~-----~~~p~~~~~~~~~~~l~~~Gv 441 (447)
+|+.++++++.+++++++++|+++|+++..+++.+..+++.|+|+++++.+++. .+.++.....++.+.|+++||
T Consensus 317 ~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 396 (434)
T 2epj_A 317 TLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGV 396 (434)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTE
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCe
Confidence 999998888999999999999999999877777777899999999999964210 112233446779999999999
Q ss_pred eeec
Q 013235 442 LFFS 445 (447)
Q Consensus 442 lv~~ 445 (447)
++.+
T Consensus 397 ~v~~ 400 (434)
T 2epj_A 397 FIAP 400 (434)
T ss_dssp ECCS
T ss_pred EEec
Confidence 9874
No 26
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=4.7e-55 Score=447.08 Aligned_cols=376 Identities=25% Similarity=0.358 Sum_probs=306.4
Q ss_pred CCHHHHHHHHhhhcCCcccc----cc---CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHh
Q 013235 58 PSADEILAKRKTFLSPSLFH----LY---SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR 130 (447)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~----~~---~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~ 130 (447)
+++++++++.++++.++... +. ..|+++++++|+++||.||++||||.+|++++++||+||+|.+|+.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 83 (424)
T 2e7u_A 4 PISEAYFQEAKRHIPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLER 83 (424)
T ss_dssp HHHHHHHHHHHHHSGGGSSSGGGGCTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhcCCCcCCcceeccccCCCCeeEEeeecCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHh
Confidence 46788999999998654321 21 248999999999999999999999999999999999999999999999988
Q ss_pred cccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCc
Q 013235 131 IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW 210 (447)
Q Consensus 131 ~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~ 210 (447)
..+ ..|+++...+++++|+++++ +.++|+|+|||+||++.|+++||.++++++||+++++|||.+..++..++....
T Consensus 84 ~~~--~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 160 (424)
T 2e7u_A 84 GLT--FGAPSPLEVALAKKVKRAYP-FVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGAL 160 (424)
T ss_dssp CSC--CSSCCHHHHHHHHHHHHHCT-TCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSC
T ss_pred CCC--CCCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCccc
Confidence 532 34678889999999999997 578999999999999999999999999999999999999999988776543222
Q ss_pred cccccC-CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCC
Q 013235 211 KFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG 289 (447)
Q Consensus 211 ~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~ 289 (447)
.+..+. .|+.....++.+..++ +| +++|++.+++. ++++++||+||+++++|.+.++++|+++|+++ ++||+
T Consensus 161 ~~~~p~~~g~~~~~~~~~~~~~~-~d----~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~ 233 (424)
T 2e7u_A 161 TLGVPSSAGVPEEYAKLTLVLEY-ND----PEGLREVLKRR-GEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGV 233 (424)
T ss_dssp CBCEESSTTCCHHHHTTEEEECT-TC----HHHHHHHHHHH-GGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTC
T ss_pred ccCCCCCCCCCCccCCceEeCCC-CC----HHHHHHHHHhC-CCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCC
Confidence 211111 1221000001111122 24 56788777642 24789999999999999999999999999999 99999
Q ss_pred EEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcC-C--cccccCCCChHHHHHHHH
Q 013235 290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR-R--NYFNTFGGNPVCTAAGHA 366 (447)
Q Consensus 290 llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~-~--~~~~T~~~np~a~aaala 366 (447)
+||+||||+|| |+| .+++++++++.||++||||++++|+|+|++++++++++.+.. . .+.+||++||++++++++
T Consensus 234 ~lI~DEv~~g~-~~g-~~~~~~~~~~~~di~s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a 311 (424)
T 2e7u_A 234 LLIADEVMTGF-RLA-FGGATELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLA 311 (424)
T ss_dssp EEEEECTTTTT-TSS-TTHHHHHHTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHH
T ss_pred EEEEecCcccc-ccc-hhHHHHHhCCCcchhhhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHH
Confidence 99999999999 888 577778899999999999999999999999999999998865 2 256899999999999999
Q ss_pred HHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCC-----CCCCCHHHHHHHHHHHHhCC
Q 013235 367 VLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ-----LKTPAKAETLYIMDKMKGIC 440 (447)
Q Consensus 367 ~L~~i~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~-----~~~p~~~~~~~~~~~l~~~G 440 (447)
+|+.+++ +++.+++++++++++++|+++.++++.+..+++.|+|+++++.+.+. .+.++.....++.+.|+++|
T Consensus 312 al~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 391 (424)
T 2e7u_A 312 TLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRG 391 (424)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCC
Confidence 9999988 88999999999999999999887788777899999999999854210 11223345678999999999
Q ss_pred ceeec
Q 013235 441 ALFFS 445 (447)
Q Consensus 441 vlv~~ 445 (447)
|++.+
T Consensus 392 v~v~~ 396 (424)
T 2e7u_A 392 IYWPP 396 (424)
T ss_dssp EECCS
T ss_pred eEEec
Confidence 99874
No 27
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=100.00 E-value=2.6e-54 Score=436.86 Aligned_cols=340 Identities=30% Similarity=0.515 Sum_probs=299.8
Q ss_pred ccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCC
Q 013235 78 LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN 157 (447)
Q Consensus 78 ~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~ 157 (447)
+.+.|+++++|+|+++||.||++||||++|++++++||+||+|.+|+.++++++.|....++++...+++++|++.++
T Consensus 15 ~~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-- 92 (395)
T 3nx3_A 15 YKRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASA-- 92 (395)
T ss_dssp GGSCSCBEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHHHHHHT--
T ss_pred cCCCCceEEeeeeeEEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC--
Confidence 446789999999999999999999999999999999999999999999999988776666788999999999999985
Q ss_pred CceEEEcCCHHHHHHHHHHHHHhh-----cCCCeEEEEcCCcccCchhhhhccCCCCccccccC--CCeEeecCCCCcCC
Q 013235 158 LKVVFFTNSGTEANELAIMMARLY-----TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYRG 230 (447)
Q Consensus 158 ~~~v~~~~sGseA~e~Aik~ar~~-----t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~--~g~~~~~~p~~~~~ 230 (447)
.++++|+|||+||++.|+++++.+ +++++||+++++|||.+..++++++...++..... .++..++.+
T Consensus 93 ~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 167 (395)
T 3nx3_A 93 LERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN----- 167 (395)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-----
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-----
Confidence 578999999999999999999887 67899999999999999999988875444333222 244444332
Q ss_pred CCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc
Q 013235 231 VFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF 310 (447)
Q Consensus 231 ~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~ 310 (447)
| +++|++.+. +++++|++||+++++|.+.++++++++|+++|++||++||+||||+||||+| .++++
T Consensus 168 ----d----~~~l~~~l~----~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g-~~~~~ 234 (395)
T 3nx3_A 168 ----D----ISSVEKLVN----EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSG-KFFAY 234 (395)
T ss_dssp ----C----HHHHHTTCC----TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSGG
T ss_pred ----C----HHHHHHhcc----CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCC-cchhH
Confidence 3 566776653 4789999999999999999999999999999999999999999999999999 68888
Q ss_pred cccCCCCCEEEeeccccCCccccccccCHHH-HHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 013235 311 EAHGVVPDIVTMAKGIGNGIPLGAVVTTPEI-AEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKE 389 (447)
Q Consensus 311 ~~~gv~pDivt~sK~lg~G~pigav~~~~~i-~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~ 389 (447)
+++++.||++|+||++++|+|+|++++++++ ++.+....+..||++||+++++++++|+.++++++.++++++++++++
T Consensus 235 ~~~~~~~d~~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~ 314 (395)
T 3nx3_A 235 EHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQ 314 (395)
T ss_dssp GGGTCCCSEEEECGGGTTTSCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HhcCCCCCEEEecccccCCCceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 888877678899999999999999999999888999999999999999
Q ss_pred HHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 390 RLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 390 ~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
.|.++..+++.+..+++.|+|+++++.+.. ...++.+.|+++||++++
T Consensus 315 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~~l~~~Gi~v~~ 362 (395)
T 3nx3_A 315 SLDELINEFDFCKKRKGLGFMQGLSLDKSV--------KVAKVIQKCQENALLLIS 362 (395)
T ss_dssp HHHHHHHHCTTEEEEEEETTEEEEEECTTS--------CHHHHHHHHHHTTEECEE
T ss_pred HHHHHHHhCCCeEEEEeEEEEEEEEeCCcc--------hHHHHHHHHHHCCCEEec
Confidence 999998888888999999999999985421 146788999999999874
No 28
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=100.00 E-value=6.8e-55 Score=449.77 Aligned_cols=368 Identities=25% Similarity=0.331 Sum_probs=299.6
Q ss_pred HHHHHHHhhhcCCccccccCCCeEEEeecccEEEe-cCCCeEEEecCCcccccCCCCCHHHH-H-HHHH---HHHhcccc
Q 013235 61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFD-ENGRRYLDAFGGIATVCCGHCHPYVV-D-SIVN---QIKRIQHS 134 (447)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d-~dG~~ylD~~~g~~~~~lGh~~p~v~-~-A~~~---~l~~~~~~ 134 (447)
+++.++..+++... .++.++.+++++|+|+|| .||++||||+++++++++||+||+|+ + |+.+ |++++.|.
T Consensus 18 ~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~d~~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~ 94 (449)
T 2cjg_A 18 DRVHEVLGRSMLVD---GLDIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPS 94 (449)
T ss_dssp GGHHHHHHTTSCCC---SCSSCBCTTTCBBTEEEBTTTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHhhccc---CCCeeEEEeeeeeCEEEECCCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 35666666665322 233344456999999999 99999999999999999999999999 9 9999 99887665
Q ss_pred cccccchHHHHHHHHHHHhCC-CCCceEEEcCCHHHHHHHHHHHHHhhcC------------CCeEEEEcCCcccCchhh
Q 013235 135 TVLYLNHAIADFAEALASKMP-GNLKVVFFTNSGTEANELAIMMARLYTG------------CNDIISLRNAYHGNAAGT 201 (447)
Q Consensus 135 ~~~~~~~~~~elae~L~~~~~-~~~~~v~~~~sGseA~e~Aik~ar~~t~------------~~~ii~~~~~yHG~~~~~ 201 (447)
+..|.++...+++++|+++++ .+.++|+|+|||+|||+.|+++++.+++ +++||+++++|||++.++
T Consensus 95 ~~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~ 174 (449)
T 2cjg_A 95 NSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYT 174 (449)
T ss_dssp TTTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTG
T ss_pred CcccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccch
Confidence 556778889999999999985 4578999999999999999999987765 789999999999999999
Q ss_pred hhccCC-CCccccccC--CCeEeecCCC--CcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCCh
Q 013235 202 MGATAQ-SNWKFNVVQ--TGVHHALNPD--PYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGY 276 (447)
Q Consensus 202 ~~~t~~-~~~~~~~~~--~g~~~~~~p~--~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~ 276 (447)
+++++. +.++..+.+ .++..++.++ .+++.|..+....+++|++.++.. .+++++||+||+|+++|.++++++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~-~~~~~~vi~ep~~~~~G~~~~~~~~ 253 (449)
T 2cjg_A 175 LSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETR-PHDIACFVAEPIQGEGGDRHFRPEF 253 (449)
T ss_dssp GGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHS-TTTEEEEEECSEETTTTCEECCHHH
T ss_pred hhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhc-CCceEEEEEeCcCCCCCCccCCHHH
Confidence 988875 222222211 3455555443 211011001123356688888653 2478999999999999999999999
Q ss_pred HHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhh-----cCCccc
Q 013235 277 LPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVL-----TRRNYF 351 (447)
Q Consensus 277 l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l-----~~~~~~ 351 (447)
+++|+++|++||++||+||||+||||+| .+|+++++++.||++||||++ |+|++++++++++.+ ....+.
T Consensus 254 l~~l~~l~~~~g~lli~DEv~~g~g~~g-~~~~~~~~~~~~di~t~sK~l----~iG~~~~~~~~~~~l~~~~~~~~~~~ 328 (449)
T 2cjg_A 254 FAAMRELCDEFDALLIFDEVQTGCGLTG-TAWAYQQLDVAPDIVAFGKKT----QVCGVMAGRRVDEVADNVFAVPSRLN 328 (449)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTTTTTS-SSSTHHHHTCCCSEEEECGGG----SSEEEEECGGGGGSTTCTTTSTTSSC
T ss_pred HHHHHHHHHHCCcEEEEeccccCCCccC-cceeecccCCCceEEEecCcc----cEEEEEECHHHhhhhhhcccCCcccc
Confidence 9999999999999999999999999999 688888899999999999999 899999999998852 223567
Q ss_pred ccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCC-eeeEeecceeEEEEEeeCCCCCCCCHHHHH
Q 013235 352 NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGI-IGDVRGRGFLLGVEFVTDRQLKTPAKAETL 430 (447)
Q Consensus 352 ~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~-i~~vrg~Gl~~giel~~~~~~~~p~~~~~~ 430 (447)
+||++||+++++++++|+.++++++.+++++++++|+++|+++..+++. +..+++.|+|+++++.+ .....
T Consensus 329 ~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~ 400 (449)
T 2cjg_A 329 STWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPT--------TADRD 400 (449)
T ss_dssp CSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECSS--------HHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEECC--------hHHHH
Confidence 8999999999999999999988889999999999999999998877886 88899999999998732 12356
Q ss_pred HHHHHHHhCCceeec
Q 013235 431 YIMDKMKGICALFFS 445 (447)
Q Consensus 431 ~~~~~l~~~Gvlv~~ 445 (447)
++.+.|+++||++.+
T Consensus 401 ~~~~~l~~~Gv~v~~ 415 (449)
T 2cjg_A 401 ELIRQLWQRAVIVLP 415 (449)
T ss_dssp HHHHHHHHTTEECEE
T ss_pred HHHHHHHHCCeEEec
Confidence 789999999999864
No 29
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=100.00 E-value=8.4e-54 Score=437.77 Aligned_cols=356 Identities=29% Similarity=0.481 Sum_probs=289.0
Q ss_pred HHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc
Q 013235 61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN 140 (447)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~ 140 (447)
.+++++..+++.+. +.+.|+++++++|+|+||.||++||||.+|++++++||+||+|.+|+.++++++.+.+..|.+
T Consensus 22 ~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~ 98 (420)
T 2pb2_A 22 AITRATFDEVILPV---YAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTN 98 (420)
T ss_dssp --------------------CCSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTSCC
T ss_pred HHHHHHHHHhhhcc---ccCCCceEEeeecCEEEECCCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccCccCC
Confidence 34556666776554 335689999999999999999999999999999999999999999999999987665555778
Q ss_pred hHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCCCCccccc
Q 013235 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV 214 (447)
Q Consensus 141 ~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~ 214 (447)
+...+++++|++.++ .++|+|+|||+||++.|+++++.+ +++++||+++++|||.+..++.+++...++..+
T Consensus 99 ~~~~~l~~~la~~~g--~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~ 176 (420)
T 2pb2_A 99 EPALRLGRKLIDATF--AERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGF 176 (420)
T ss_dssp HHHHHHHHHHHHHSS--CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTS
T ss_pred HHHHHHHHHHHhhCC--CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccC
Confidence 899999999999984 578999999999999999999876 577799999999999999888776643222211
Q ss_pred cC--CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235 215 VQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (447)
Q Consensus 215 ~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI 292 (447)
.+ .++..++. +| +++|++.+. +++++||+||+++++|+++++++++++|+++|++||++||
T Consensus 177 ~p~~~~~~~~~~---------~d----~~~le~~i~----~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI 239 (420)
T 2pb2_A 177 GPKPADIIHVPF---------ND----LHAVKAVMD----DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLV 239 (420)
T ss_dssp SSCCSCEEEECT---------TC----HHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCCeEEecC---------CC----HHHHHHHhc----cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEE
Confidence 11 23444432 23 577777764 3789999999999999888899999999999999999999
Q ss_pred EeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh
Q 013235 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ 372 (447)
Q Consensus 293 ~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~ 372 (447)
+||+|+||||+| .+++++.+++.||+++|||++++|+|+|++++++++++.+....+..||++||+++++++++|+.++
T Consensus 240 ~Dev~~g~~~~g-~~~~~~~~~~~~diit~sK~l~~G~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~ 318 (420)
T 2pb2_A 240 FDEVQCGMGRTG-DLFAYMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIIN 318 (420)
T ss_dssp EECTTTTTTTTS-SSSHHHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHS
T ss_pred EEcCCcCcccCC-cHHHHHhcCCCCCeEEecccccCCCceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHH
Confidence 999999999999 6777788899999999999999999999999999998887765577899999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 373 KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 373 ~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
++++.+++++++++|+++|+++..+++.+..+++.|+|+++++.++.. ....++.+.|+++||++.+
T Consensus 319 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~v~~~~~~~------~~~~~l~~~l~~~Gi~v~~ 385 (420)
T 2pb2_A 319 TPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYK------GRARDFLYAGAEAGVMVLN 385 (420)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECGGGT------TCHHHHHHHHHHTTEECEE
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecceEEEEEECCCch------HHHHHHHHHHHHCCCEEEe
Confidence 888999999999999999999876778788899999999999853210 0145788999999999864
No 30
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=100.00 E-value=8e-53 Score=434.28 Aligned_cols=373 Identities=22% Similarity=0.285 Sum_probs=286.5
Q ss_pred CCHHHHHHHHhhhcCCcccc----ccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc
Q 013235 58 PSADEILAKRKTFLSPSLFH----LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH 133 (447)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~ 133 (447)
|++++++++.++++.++... +...|+++++|+|+++||.+|++||||.+|++++++||+||+|.+|+.++++...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~ 91 (453)
T 2cy8_A 12 EGSVFWAQRARSVMPDGVTADTRAFDPHGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQ 91 (453)
T ss_dssp HHHHHHHHHHHHHSCCC------CCSSCCCCEEEEEBTEEEETTCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTCS
T ss_pred chhHHHHHHHHhhcCCCCCccccccCCCCceEEEeecCEEEECCCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhCCC
Confidence 45778999999998765322 33459999999999999999999999999999999999999999999999987533
Q ss_pred ccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccc
Q 013235 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFN 213 (447)
Q Consensus 134 ~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~ 213 (447)
..++++...+++++|++.++ +.++|+|+|||+||++.|+++||.++++++||+++++|||.+..++..++. .+...
T Consensus 92 --~~~~~~~~~~la~~l~~~~~-~~~~v~~~~gg~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~~ 167 (453)
T 2cy8_A 92 --YAASHPLEVRWAERIVAAFP-SIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNS-HFDGQ 167 (453)
T ss_dssp --SCSSCHHHHHHHHHHHHHCT-TCSEEEEESCHHHHHHHHHHHHHHHHCCCEEEEECC---------------------
T ss_pred --CCCCCHHHHHHHHHHHhhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCC-ccCCC
Confidence 24678889999999999987 578999999999999999999998889999999999999999887765432 11000
Q ss_pred ccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEE
Q 013235 214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293 (447)
Q Consensus 214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~ 293 (447)
. ..++.....++.+..++ +| +++|++.+++. ++++++||+||+++++|.++++++|+++|+++|++||++||+
T Consensus 168 ~-~~g~~~~~~~~~~~~~~-~d----~~~le~~l~~~-~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~ 240 (453)
T 2cy8_A 168 P-APGVLPETTANTLLIRP-DD----IEGMREVFANH-GSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFIL 240 (453)
T ss_dssp ---------CGGGEEEECT-TC----HHHHHHHHHHH-GGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred c-CCCCCccccCceeecCC-CC----HHHHHHHHHhc-CCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 0 01211100011111122 24 66788777643 247899999999999999999999999999999999999999
Q ss_pred eccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcC---C--cccccCCCChHHHHHHHHHH
Q 013235 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTR---R--NYFNTFGGNPVCTAAGHAVL 368 (447)
Q Consensus 294 DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~---~--~~~~T~~~np~a~aaala~L 368 (447)
||||+|| |+| .+++++++++.||++++||++++|+|+|++++++++++.+.. . .+.+||++||++++++.++|
T Consensus 241 DEv~~g~-~~g-~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal 318 (453)
T 2cy8_A 241 DEVISGF-RVG-NHGMQALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAI 318 (453)
T ss_dssp ECTTTTT-TTC-TTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHH
T ss_pred ecCcccc-ccC-chhhhHHhCCCCcEEEEChhhhCCcceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHH
Confidence 9999999 888 577788899999999999999999999999999999988865 1 25679999999999999999
Q ss_pred HH-HhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEee-----C------CCCCCCCHHHHHHHHHHH
Q 013235 369 KV-IQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVT-----D------RQLKTPAKAETLYIMDKM 436 (447)
Q Consensus 369 ~~-i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~-----~------~~~~~p~~~~~~~~~~~l 436 (447)
+. + ++++.+++++++++++++|+++..+++.+..+++.|+|+++++.+ + ...+.++.....++.+.|
T Consensus 319 ~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 397 (453)
T 2cy8_A 319 DTIL-EDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMAL 397 (453)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHH
T ss_pred HHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHH
Confidence 98 8 778999999999999999999877778777899999999999964 1 011122334456789999
Q ss_pred HhCCceee
Q 013235 437 KGICALFF 444 (447)
Q Consensus 437 ~~~Gvlv~ 444 (447)
+++||++.
T Consensus 398 ~~~Gv~v~ 405 (453)
T 2cy8_A 398 ILEGVDIG 405 (453)
T ss_dssp HHTTEECB
T ss_pred HHCCeEEe
Confidence 99999985
No 31
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=100.00 E-value=3.2e-52 Score=429.20 Aligned_cols=361 Identities=25% Similarity=0.369 Sum_probs=299.9
Q ss_pred CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-cccchHHHHHHHHHHHhCCCCC
Q 013235 80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPGNL 158 (447)
Q Consensus 80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~~~~~~elae~L~~~~~~~~ 158 (447)
+.|+++++|+|+++||.+|++||||.++++++++||+||+|++|+.++++++..... .+.++...+++++|++.++.+.
T Consensus 31 ~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~ 110 (449)
T 3a8u_X 31 RDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNL 110 (449)
T ss_dssp HSCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTE
T ss_pred CCCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCC
Confidence 368999999999999999999999999999999999999999999999987642222 5678888999999999998778
Q ss_pred ceEEEcCCHHHHHHHHHHHHHhhc------CCCeEEEEcCCcccCchhhhhccCCCCcccccc--CCCeEeecCCCCcCC
Q 013235 159 KVVFFTNSGTEANELAIMMARLYT------GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPDPYRG 230 (447)
Q Consensus 159 ~~v~~~~sGseA~e~Aik~ar~~t------~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~--~~g~~~~~~p~~~~~ 230 (447)
++|+|++||+||++.|+++++.++ ++++||+++++|||.+..++.+++...++..+. ..++..++.|..++.
T Consensus 111 ~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~ 190 (449)
T 3a8u_X 111 NHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASN 190 (449)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGG
T ss_pred CEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccC
Confidence 899999999999999999998765 678999999999999998888776433222221 246777777765554
Q ss_pred CCC-CC----hHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC
Q 013235 231 VFG-AD----GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS 305 (447)
Q Consensus 231 ~~~-~d----~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~ 305 (447)
+|. .| ....+++|++.+.+..++++++||+||+++++|.+.++++|+++|+++|++||++||+||||+||||+|
T Consensus 191 ~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g- 269 (449)
T 3a8u_X 191 AYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG- 269 (449)
T ss_dssp TTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS-
T ss_pred ccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccC-
Confidence 321 12 223467888888754334789999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCC---------cccccCCCChHHHHHHHHHHHHHhhhh
Q 013235 306 HFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR---------NYFNTFGGNPVCTAAGHAVLKVIQKDK 375 (447)
Q Consensus 306 ~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~---------~~~~T~~~np~a~aaala~L~~i~~~~ 375 (447)
.+++++.+++.||++++||++++| +|+|++++++++++.+... .+.+||++||++++++.++|+.+++++
T Consensus 270 ~~~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~ 349 (449)
T 3a8u_X 270 SMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKEN 349 (449)
T ss_dssp SSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHTT
T ss_pred cchhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhcC
Confidence 677888899999999999999998 8999999999999888653 356799999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 376 LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 376 l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+.+++++++++++++|+++ .+++.+..+++.|+|+++++..+.... . ....++.+.|+++||++.+
T Consensus 350 ~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~~--~-~~~~~~~~~l~~~Gv~v~~ 415 (449)
T 3a8u_X 350 LVQSVAEVAPHFEKALHGI-KGAKNVIDIRNFGLAGAIQIAPRDGDA--I-VRPFEAGMALWKAGFYVRF 415 (449)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TTSTTEEEEEEETTEEEEEECCBTTBS--S-HHHHHHHHHHHHHTEECEE
T ss_pred HHHHHHHHHHHHHHHHHHH-hcCCCeEEEeeeEEEEEEEEecCcccc--c-ccHHHHHHHHHHCCcEEec
Confidence 9999999999999999884 347777889999999999996432111 0 0123588899999999864
No 32
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=7.1e-51 Score=415.76 Aligned_cols=365 Identities=30% Similarity=0.471 Sum_probs=297.1
Q ss_pred HHHHHHHHhhh-cCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCC-CHHHHHHHHHHHHhcccc-cc
Q 013235 60 ADEILAKRKTF-LSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHC-HPYVVDSIVNQIKRIQHS-TV 136 (447)
Q Consensus 60 ~~~~~~~~~~~-~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~-~p~v~~A~~~~l~~~~~~-~~ 136 (447)
+.++++++.++ +.+.... +..|+++++++|+++||.+|++||||.++.+++++||+ ||+|++|+.+++++..+. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~ 81 (419)
T 2eo5_A 3 SRKIIEESDIYLATSTRDP-ELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAAN 81 (419)
T ss_dssp HHHHHHHHHHHSCCCCCSS-CCCCCCEEEEEBTEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCS
T ss_pred hHHHHHHHHhhhccccccc-cCCCceEEeeecCEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCcccccc
Confidence 45677777777 6665433 23689999999999999999999999999999999999 999999999999876542 24
Q ss_pred cccchHHHHHHHHHHHhCCCC-CceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCC-Cccccc
Q 013235 137 LYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNV 214 (447)
Q Consensus 137 ~~~~~~~~elae~L~~~~~~~-~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~-~~~~~~ 214 (447)
.|+++...+++++|++.++.+ .++|+|+|||+||++.|+++++.++ +++||+++++|||.+..++++++.. .++...
T Consensus 82 ~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~-~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~ 160 (419)
T 2eo5_A 82 DFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTG-RKYIIAFLGGFHGRTFGSISLTASKAVQRSIV 160 (419)
T ss_dssp CSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTS-CCEEEEETTCCCCSSHHHHHHCCSCGGGGCSS
T ss_pred ccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhh-CCcEEEECCCcCCCCHhhHhhcCCcccccccc
Confidence 577888899999999999866 5789999999999999999988766 7899999999999999999887653 333222
Q ss_pred c--CCCeEeecCCCCcCCCCCCC----h--H--HHHHHHH-HHHHcc-CCCCeEEEEEccccCCCceeeCCCChHHHHHH
Q 013235 215 V--QTGVHHALNPDPYRGVFGAD----G--E--MYAKDVQ-DLIDFG-TSGHVAGFLSESIQGVGGIIELAPGYLPAVYK 282 (447)
Q Consensus 215 ~--~~g~~~~~~p~~~~~~~~~d----~--~--~~~~~le-~~i~~~-~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~ 282 (447)
. ..++..++.++.++.+|+.+ . + ..+++|+ +.+... .++++++||+||+++++|.+.++++++++|++
T Consensus 161 ~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~ 240 (419)
T 2eo5_A 161 GPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQK 240 (419)
T ss_dssp CCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHH
T ss_pred CCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHH
Confidence 1 14677777777666666531 0 0 1256787 777642 12478999999999999998889999999999
Q ss_pred HHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCCcccccCCCChHHH
Q 013235 283 SIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCT 361 (447)
Q Consensus 283 l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~~~~~T~~~np~a~ 361 (447)
+|++||++||+||||+|||++| .+++++++++.||++||||++++| +|+|+++++++++ .+ ...+.+||++||+++
T Consensus 241 l~~~~~~~li~DE~~~~~g~~g-~~~~~~~~~~~~d~~t~sK~~~~G~~riG~~~~~~~~~-~~-~~~~~~t~~~n~~~~ 317 (419)
T 2eo5_A 241 LAKKYGILLVDDEVQMGLGRTG-KLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD-FK-PGMHSNTFGGNALAC 317 (419)
T ss_dssp HHHHHTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEEEGGGC-CC-------CCCCCHHHH
T ss_pred HHHHcCCEEEEeccccCCccCc-chhhHHhcCCCCCEEEecccccCCccceEEEEEchHhh-cC-CcccCCCCCCCHHHH
Confidence 9999999999999999999999 577778889999999999999999 9999999999988 66 445678999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCc
Q 013235 362 AAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICA 441 (447)
Q Consensus 362 aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gv 441 (447)
+++.++|+.+++ +.+++++++++|++.|.++ +..+++.|+|+++++.. ...... +.+.|+++||
T Consensus 318 ~aa~aal~~~~~--~~~~~~~~~~~l~~~L~~~------~~~~~~~g~~~~i~~~~-------~~~~~~-~~~~l~~~Gv 381 (419)
T 2eo5_A 318 AIGSKVIDIVKD--LLPHVNEIGKIFAEELQGL------ADDVRGIGLAWGLEYNE-------KKVRDR-IIGESFKRGL 381 (419)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTS------SSEEEEETTEEEEECSC-------HHHHHH-HHHHHHHTTE
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh------hhheEeeeEEEEEEEec-------CccHHH-HHHHHHHCCC
Confidence 999999998765 8899999999999888664 45789999999998831 112245 8889999999
Q ss_pred eeec
Q 013235 442 LFFS 445 (447)
Q Consensus 442 lv~~ 445 (447)
++.+
T Consensus 382 ~v~~ 385 (419)
T 2eo5_A 382 LLLP 385 (419)
T ss_dssp ECEE
T ss_pred EEec
Confidence 9874
No 33
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=100.00 E-value=4.3e-49 Score=403.32 Aligned_cols=366 Identities=26% Similarity=0.362 Sum_probs=295.2
Q ss_pred HHHhhhcCCccccc-cCCCeE-EEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccc-ccccch
Q 013235 65 AKRKTFLSPSLFHL-YSKPLN-VVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST-VLYLNH 141 (447)
Q Consensus 65 ~~~~~~~~~~~~~~-~~~p~~-~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~-~~~~~~ 141 (447)
...+++++.....+ ...|++ +++++|+++||.+|++|||+.++.+++++||+||+|.+|+.+++++..+.. ..|+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~ 86 (429)
T 1s0a_A 7 AFDQRHILHPFTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHA 86 (429)
T ss_dssp HHHHHHBCCTTCCSSSCCCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECH
T ss_pred hHHHHhhccccccccccCCceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCCH
Confidence 33445554433222 223665 899999999999999999999999999999999999999999998764432 356788
Q ss_pred HHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcC-----CCeEEEEcCCcccCchhhhhccCCCC-cccccc
Q 013235 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTG-----CNDIISLRNAYHGNAAGTMGATAQSN-WKFNVV 215 (447)
Q Consensus 142 ~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~-----~~~ii~~~~~yHG~~~~~~~~t~~~~-~~~~~~ 215 (447)
...+++++|+++++.+.++|+|++||+||++.|+++++.+++ +++||+++++|||.+..++.+++... ++....
T Consensus 87 ~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~ 166 (429)
T 1s0a_A 87 PAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWK 166 (429)
T ss_dssp HHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGT
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhccccc
Confidence 889999999999987778999999999999999998876654 78999999999999998887765432 221111
Q ss_pred --CCCeEeecCCCCc-CCCCC-CChHHHHHHHHHHHHccCCCCeEEEEEccc-cCCCceeeCCCChHHHHHHHHHHhCCE
Q 013235 216 --QTGVHHALNPDPY-RGVFG-ADGEMYAKDVQDLIDFGTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGL 290 (447)
Q Consensus 216 --~~g~~~~~~p~~~-~~~~~-~d~~~~~~~le~~i~~~~~~~~aavi~Epi-~~~gG~~~~~~~~l~~l~~l~~~~g~l 290 (447)
..++..++.|..+ ...|+ .| +++|++.+... ++++++|++||+ ++++|.+.++++++++|+++|++||++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~d----~~~l~~~l~~~-~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~ 241 (429)
T 1s0a_A 167 GYLPENLFAPAPQSRMDGEWDERD----MVGFARLMAAH-RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGIL 241 (429)
T ss_dssp TTSCCCEEECCCCSBC-CCCCGGG----GHHHHHHHHHH-TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCE
T ss_pred CCCCCceEeCCCcccccccchHHH----HHHHHHHHHhC-CCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 1355666655421 11221 23 56777777643 247899999999 999999999999999999999999999
Q ss_pred EEEeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCC-----cccccCCCChHHHHHH
Q 013235 291 CIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRR-----NYFNTFGGNPVCTAAG 364 (447)
Q Consensus 291 lI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~-----~~~~T~~~np~a~aaa 364 (447)
||+||||+|||++| .+++++++++.||+++|||++++| +|+|++++++++++.+... .+..||++|+++++++
T Consensus 242 li~De~~~~~g~~g-~~~~~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~ 320 (429)
T 1s0a_A 242 LIADEIATGFGRTG-KLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAA 320 (429)
T ss_dssp EEEECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHH
T ss_pred EEEeehhhCCcccc-hHHHhhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHH
Confidence 99999999999999 567778889999999999999999 9999999999999888653 2557999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235 365 HAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF 444 (447)
Q Consensus 365 la~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~ 444 (447)
.++|+.++++++.+++++++++|+++|+++.. ++.+..+++.|+|+++++.+. . ...++.+.|+++||++.
T Consensus 321 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~-~~~~~~~~~~g~~~~~~~~~~-----~---~~~~l~~~l~~~Gi~v~ 391 (429)
T 1s0a_A 321 NASLAILESGDWQQQVADIEVQLREQLAPARD-AEMVADVRVLGAIGVVETTHP-----V---NMAALQKFFVEQGVWIR 391 (429)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGG-CTTEEEEEEETTEEEEEESSC-----B---CHHHHHHHHHHTTEECC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhc-CCCEEEEEEeeEEEEEEECCc-----c---cHHHHHHHHHHCCCEEe
Confidence 99999998888999999999999999988643 666777899999999998431 0 13568889999999986
Q ss_pred c
Q 013235 445 S 445 (447)
Q Consensus 445 ~ 445 (447)
+
T Consensus 392 ~ 392 (429)
T 1s0a_A 392 P 392 (429)
T ss_dssp C
T ss_pred c
Confidence 4
No 34
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=100.00 E-value=1.9e-48 Score=397.36 Aligned_cols=381 Identities=29% Similarity=0.487 Sum_probs=310.0
Q ss_pred CHHHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccc-cc
Q 013235 59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST-VL 137 (447)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~-~~ 137 (447)
++++++++..+++++....+ .|+++.+++|+++||.+|++||||.++.+++++||+||+|.+|+.++++...+.. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~d~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~ 80 (426)
T 1sff_A 3 SNKELMQRRSQAIPRGVGQI--HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQV 80 (426)
T ss_dssp CHHHHHHHHHHHSCTTBCCS--EEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTT
T ss_pred hHHHHHHHHHHhcCcccccc--CCceEEecccCEEEeCCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccc
Confidence 56778888888887654432 3889999999999999999999999999999999999999999999998765432 34
Q ss_pred ccchHHHHHHHHHHHhCCCCC-ceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCC-Ccccccc
Q 013235 138 YLNHAIADFAEALASKMPGNL-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQS-NWKFNVV 215 (447)
Q Consensus 138 ~~~~~~~elae~L~~~~~~~~-~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~-~~~~~~~ 215 (447)
++++...+|+++|+++++++. ++|+|++||+||++.++++++.++++.+|++++++|||....++.+++.. .++....
T Consensus 81 ~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~ 160 (426)
T 1sff_A 81 LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMG 160 (426)
T ss_dssp EECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSC
T ss_pred cCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCchHhhhhcCCccccccccC
Confidence 668889999999999996434 78999999999999999988877777799999999999998777766532 2221211
Q ss_pred C--CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc-CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235 216 Q--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG-TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (447)
Q Consensus 216 ~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~-~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI 292 (447)
. .++..++.+..+++ .+....+++|++.+... .++++++|++||+++++|.+.++++++++|.++|++||++||
T Consensus 161 ~~~~~v~~v~~~~~~~~---~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li 237 (426)
T 1sff_A 161 LMPGHVYRALYPCPLHG---ISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLI 237 (426)
T ss_dssp CCCSSEEEECCCBGGGT---BCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEE
T ss_pred CCCCCcEEeCCCccccc---cchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence 1 24555655432221 01111256788777631 124789999999988899888899999999999999999999
Q ss_pred EeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh
Q 013235 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ 372 (447)
Q Consensus 293 ~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~ 372 (447)
+||+|+||+++| .+++++.+++.||+++|||++++|+|+|++++++++++.+....+..||++|+++++++.++|+.++
T Consensus 238 ~De~~~~~~~~g-~~~~~~~~~~~~di~s~sK~~~~GlriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~ 316 (426)
T 1sff_A 238 ADEVQSGAGRTG-TLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFE 316 (426)
T ss_dssp EECTTTTTTTTS-SSSGGGGTTSCCSEEEECGGGGTSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH
T ss_pred EechhhccCccc-chhhhhhcCCCCCEEEEcccccCCCceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999 6777788899999999999999999999999999999888765567899999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 373 KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 373 ~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
++++.+++++++++++++|+++...++.+..+++.|+|+++++......+.|......++.+.|+++||++.+
T Consensus 317 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~ 389 (426)
T 1sff_A 317 QENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLS 389 (426)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEE
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEec
Confidence 8889999999999999999998666777778889999999999643222234444567789999999999874
No 35
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=7.6e-49 Score=396.19 Aligned_cols=348 Identities=26% Similarity=0.457 Sum_probs=299.2
Q ss_pred HHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchH
Q 013235 63 ILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHA 142 (447)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~ 142 (447)
++++.++++.+. +...|+++++|+|+++||.||++||||.++++++++||+||+|.+|+.++++.+.+....++++.
T Consensus 3 ~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~ 79 (392)
T 3ruy_A 3 IIELTDTYGANN---YHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSDQ 79 (392)
T ss_dssp HHHHHHHHBCTT---CCCCSCEECEEEBTEEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSEETT
T ss_pred HHHHHHhhhhcc---CCCCCceEEeeeeCEEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccccCCHH
Confidence 566667777654 44568999999999999999999999999999999999999999999999998877666677888
Q ss_pred HHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh--------cCCCeEEEEcCCcccCchhhhhccCCCCccccc
Q 013235 143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY--------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV 214 (447)
Q Consensus 143 ~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~--------t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~ 214 (447)
..+++++|++.++ .++++|++||++|++.|+++++.. +++++||+..++|||.+..++++++...++...
T Consensus 80 ~~~l~~~la~~~g--~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (392)
T 3ruy_A 80 LGPWYEKVAKLTN--KEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGF 157 (392)
T ss_dssp HHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTC
T ss_pred HHHHHHHHHHhcC--CCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhcccc
Confidence 9999999999985 678999999999999999998876 667899999999999999999887765444332
Q ss_pred cC--CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235 215 VQ--TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (447)
Q Consensus 215 ~~--~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI 292 (447)
.+ .++..++. +| .++|++.+. .++++|+++|+++++|.+.++++|+++|.++|++||++||
T Consensus 158 ~~~~~~~~~~~~---------~d----~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li 220 (392)
T 3ruy_A 158 GPMLPGIIVIPY---------GD----LEALKAAIT----PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFV 220 (392)
T ss_dssp CSCCSSEEEECT---------TC----HHHHHHHCC----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEE
T ss_pred CCCCCCCeeeCc---------cc----HHHHHHHhc----cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 21 23333322 23 577777765 3789999999999999999999999999999999999999
Q ss_pred EeccccCccccCCCcccccccCCCCCEEEeeccccCC-ccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHH
Q 013235 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI 371 (447)
Q Consensus 293 ~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G-~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i 371 (447)
+||+|+|||++| ..++.+.+++.||+++|||++++| +|+|++++++++++.+....+..+|+.|+++++++.++|+.+
T Consensus 221 ~De~~~~~~~~g-~~~~~~~~~~~~d~~~~SK~l~gG~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~ 299 (392)
T 3ruy_A 221 ADEIQTGLGRTG-KVFACDWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVL 299 (392)
T ss_dssp EECTTTTTTTTS-SSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHH
T ss_pred EeechhCCCccc-cchhhhccCCCCCEEEEchhhhCChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999 677888899999999999999999 899999999999988877677889999999999999999998
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 372 QKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 372 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+++++.++++++.+++++.|+++ .++.+..+++.|.++++.+.. ...++.+.|+++||++.+
T Consensus 300 ~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~g~~~~~~~~~----------~~~~l~~~l~~~gi~v~~ 361 (392)
T 3ruy_A 300 EEEKLTERSLQLGEKLVGQLKEI--DNPMITEVRGKGLFIGIELNE----------PARPYCEQLKAAGLLCKE 361 (392)
T ss_dssp HHTTHHHHHHHHHHHHHHHHTTC--CCTTEEEEEEETTEEEEEESS----------CSHHHHHHHHTTTEECCC
T ss_pred HhhhHHHHHHHHHHHHHHHHHHh--cCCCceEEEeeeeEEEEEEcc----------hHHHHHHHHHHCCcEEec
Confidence 88889999999999999998876 335678899999999999742 135688999999999875
No 36
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=100.00 E-value=4.6e-48 Score=391.77 Aligned_cols=342 Identities=31% Similarity=0.536 Sum_probs=295.7
Q ss_pred ccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCC
Q 013235 78 LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN 157 (447)
Q Consensus 78 ~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~ 157 (447)
+...|+++++|+|+++||.+|++||||.++.+++++||+||+|.+|+.++++++.+....+.++...+++++|++.++
T Consensus 18 ~~~~~~~~~~~~g~~~~~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-- 95 (406)
T 4adb_A 18 YAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATF-- 95 (406)
T ss_dssp CCCCSSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHSS--
T ss_pred cCCCCceEEeeccCEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhCC--
Confidence 345689999999999999999999999999999999999999999999999987666566778889999999999985
Q ss_pred CceEEEcCCHHHHHHHHHHHHHhh------cCCCeEEEEcCCcccCchhhhhccCCCCccccccC--CCeEeecCCCCcC
Q 013235 158 LKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ--TGVHHALNPDPYR 229 (447)
Q Consensus 158 ~~~v~~~~sGseA~e~Aik~ar~~------t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~--~g~~~~~~p~~~~ 229 (447)
.++++|++||++|++.|+++++.+ +++++||+.+++||+....+...++...+...+.. .++..++.+
T Consensus 96 ~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 171 (406)
T 4adb_A 96 ADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYN---- 171 (406)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTT----
T ss_pred CCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCC----
Confidence 458999999999999999988776 67899999999999999999888775544333222 244444332
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccc
Q 013235 230 GVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309 (447)
Q Consensus 230 ~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~ 309 (447)
| .++|++.+. +++++|+++|++++||+++++.+++++|.++|++||++||+||+|+||+++| ..++
T Consensus 172 -----d----~~~l~~~l~----~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g-~~~~ 237 (406)
T 4adb_A 172 -----D----INSASALID----DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTG-ELYA 237 (406)
T ss_dssp -----C----HHHHHTTCS----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS-SSSH
T ss_pred -----c----HHHHHHHhc----CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc-hhHH
Confidence 2 566766653 4789999999999999998899999999999999999999999999999999 6777
Q ss_pred ccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 013235 310 FEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKE 389 (447)
Q Consensus 310 ~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~ 389 (447)
++.+++.||++||+|++++|+|+|++++++++++.+....+..||++|+++++++.++|+.++++++.++++++.+++++
T Consensus 238 ~~~~~~~~d~~t~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~ 317 (406)
T 4adb_A 238 YMHYGVTPDLLTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVE 317 (406)
T ss_dssp HHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCEEEechhhcCCCCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999998887777889999999999999999998888899999999999999
Q ss_pred HHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 390 RLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 390 ~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
.|+++...+..+.++++.|+++++++.++.. ....++.+.|+++||++.+
T Consensus 318 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~l~~~gi~v~~ 367 (406)
T 4adb_A 318 RLNTINHRYGLFSEVRGLGLLIGCVLNADYA------GQAKQISQEAAKAGVMVLI 367 (406)
T ss_dssp HHHHHHHHHCCEEEEEEETTEEEEEECTTTT------TCHHHHHHHHHHTTEECEE
T ss_pred HHHHHHHhCCCceEEEEEEEEEEEEEeCCcH------HHHHHHHHHHHHCCcEEee
Confidence 9999877778888999999999999954210 1246789999999999864
No 37
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=100.00 E-value=1.7e-44 Score=365.23 Aligned_cols=338 Identities=33% Similarity=0.561 Sum_probs=280.7
Q ss_pred cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCC
Q 013235 79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL 158 (447)
Q Consensus 79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~ 158 (447)
...|+++.+++|+++||.+|++||||.+++++.++||+||+|.+|+.++++...+.+..|+.+...+++++|+++++ .
T Consensus 20 ~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--~ 97 (397)
T 2ord_A 20 SRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTF--G 97 (397)
T ss_dssp CCCSCEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTTT--S
T ss_pred cCCCceEEeeecCEEEECCCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHhcC--C
Confidence 45689999999999999999999999999988999999999999999999887654445677889999999999984 5
Q ss_pred ceEEEcCCHHHHHHHHHHHHHhh-----cCCCeEEEEcCCcccCchhhhhccCCCCcccccc--CCCeEeecCCCCcCCC
Q 013235 159 KVVFFTNSGTEANELAIMMARLY-----TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPDPYRGV 231 (447)
Q Consensus 159 ~~v~~~~sGseA~e~Aik~ar~~-----t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~--~~g~~~~~~p~~~~~~ 231 (447)
++++|++||++|++.|++.++.+ +++++||+++++|||....++...+...++..+. ..++..++.
T Consensus 98 ~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~------- 170 (397)
T 2ord_A 98 GKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF------- 170 (397)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------
Confidence 78999999999999999988754 4677899999999999987666554321111110 123444432
Q ss_pred CCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccc
Q 013235 232 FGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE 311 (447)
Q Consensus 232 ~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~ 311 (447)
+| .++|++.+. +++++|+++|+++++|.+.++.+++++|.++|++||++||+||+|+||+++| ..+.++
T Consensus 171 --~d----~~~l~~~l~----~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g-~~~~~~ 239 (397)
T 2ord_A 171 --NN----VEDLRRKMS----EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG-KLFAYQ 239 (397)
T ss_dssp --TC----HHHHHHHCC----TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSHHH
T ss_pred --CC----HHHHHHHhh----cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCc-cchhhh
Confidence 13 567777764 3789999999999999977789999999999999999999999999999998 566667
Q ss_pred ccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 013235 312 AHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERL 391 (447)
Q Consensus 312 ~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L 391 (447)
.+++.||+++|+|.+++|+|+|+++++++++ .+....+..||++|+++++++.++|+.++++++.++++++++++++.|
T Consensus 240 ~~~~~~d~~s~sK~~~~G~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L 318 (397)
T 2ord_A 240 KYGVVPDVLTTAKGLGGGVPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKL 318 (397)
T ss_dssp HHTCCCSEEEECGGGGTTSCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHH
T ss_pred hhCCCCCeeeeccccCCCcCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7888899999999999999999999999887 665445668999999999999999999887789999999999999999
Q ss_pred HHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 392 TALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 392 ~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+++..+++.+..+++.|.++++++.++. ...++.+.|+++||++.+
T Consensus 319 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~l~~~l~~~gi~v~~ 364 (397)
T 2ord_A 319 QEMKEEYDVVADVRGMGLMIGIQFREEV--------SNREVATKCFENKLLVVP 364 (397)
T ss_dssp HHHHHHCTTEEEEEEETTEEEEEECTTS--------CHHHHHHHHHHTTEECEE
T ss_pred HHHHHhCCceEEEEEEeEEEEEEECChH--------HHHHHHHHHHHCCCEEcc
Confidence 9876567777778899999999884321 145788999999999864
No 38
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=100.00 E-value=1.1e-43 Score=358.88 Aligned_cols=355 Identities=29% Similarity=0.478 Sum_probs=285.5
Q ss_pred HHHHHHHhhhcCCccccccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc
Q 013235 61 DEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN 140 (447)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~ 140 (447)
+++++..++|++.....+...|+++++++|+++||.+|+.||||.++.+++++||++|+|.+|+.++++...+.+..|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~ 86 (395)
T 1vef_A 7 EDWRALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPT 86 (395)
T ss_dssp --CHHHHHHHHHHBCSCSCCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCC
T ss_pred HHHHHHHHhhhhhcccccCCCCccEEecccCEEEeCCCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCccccCC
Confidence 34566666675411012345688999999999999999999999999988899999999999999999886554445677
Q ss_pred hHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccc-cC-CC
Q 013235 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV-VQ-TG 218 (447)
Q Consensus 141 ~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~-~~-~g 218 (447)
+...+++++|+++++.+.+++++++||++|++.+++.++.++++++||+++++||+....++...+...+.... +. .+
T Consensus 87 ~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~ 166 (395)
T 1vef_A 87 PMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEP 166 (395)
T ss_dssp HHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSC
T ss_pred HHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCC
Confidence 88899999999999766788999999999999999988766678899999999999988776654432111111 00 12
Q ss_pred eEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc
Q 013235 219 VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA 298 (447)
Q Consensus 219 ~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t 298 (447)
+..++. .| .++|++.+. +++++|+++|+++++|.+.++++++++|.++|++||++||+||+|+
T Consensus 167 ~~~~~~---------~d----~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~ 229 (395)
T 1vef_A 167 VEFIPY---------ND----VEALKRAVD----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT 229 (395)
T ss_dssp EEEECT---------TC----HHHHHHHCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred eeEeCC---------Cc----HHHHHHHhc----cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 222221 23 567777764 2689999999999999998899999999999999999999999999
Q ss_pred CccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHH
Q 013235 299 GFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQN 378 (447)
Q Consensus 299 Gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~ 378 (447)
||+++| ..+.++.+++.||+++|+|.+++|+|+|++++++++++.+....+..|++.|+++++++.++|+.++++++.+
T Consensus 230 ~~~~~g-~~~~~~~~~~~~d~~s~sK~~~~g~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~ 308 (395)
T 1vef_A 230 GMGRTG-KRFAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWE 308 (395)
T ss_dssp TTTTTS-SSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHH
T ss_pred CCccCC-chhHhhhcCCCCCEEEEcccccCCCceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 999988 5666677888999999999999999999999999998888765567889999999999999999887777889
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235 379 NAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS 445 (447)
Q Consensus 379 ~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~ 445 (447)
+++++.+++++.|+++. .+.+..+++.|.++++++..+ ..++.+.|+ ++||++.+
T Consensus 309 ~~~~~~~~l~~~l~~~~--~~~~~~~~~~g~~~~~~~~~~----------~~~l~~~l~~~~gi~v~~ 364 (395)
T 1vef_A 309 RAAELGPWFMEKLRAIP--SPKIREVRGMGLMVGLELKEK----------AAPYIARLEKEHRVLALQ 364 (395)
T ss_dssp HHHHHHHHHHHHHHTSC--CTTEEEEEEETTEEEEEESSC----------SHHHHHHHHHHHCEECEE
T ss_pred HHHHHHHHHHHHHHHhh--cCceEEEEEEEEEEEEEEcCh----------HHHHHHHHHHHCCeEEec
Confidence 99999999999887752 244556788999999988421 256888898 89999864
No 39
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=100.00 E-value=2.2e-41 Score=339.09 Aligned_cols=330 Identities=35% Similarity=0.580 Sum_probs=269.4
Q ss_pred CCCeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCc
Q 013235 80 SKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK 159 (447)
Q Consensus 80 ~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~ 159 (447)
..|+.+.+++|+++||.+|+.||||.++...+++||.+|.+.+|+.++++...+....|+++...+++++|+++++.+ +
T Consensus 9 ~~~~~~~~~~g~~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~~-~ 87 (375)
T 2eh6_A 9 RLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWTE-G 87 (375)
T ss_dssp CEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTBCCHHHHHHHHHHHHTSSSC-E
T ss_pred CCCccEEeeecCEEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHhhcCCC-C
Confidence 468899999999999999999999999988789999999999999999987654444567778889999999998542 7
Q ss_pred eEEEcCCHHHHHHHHHHHHHhhc-----CCCeEEEEcCCcccCchhhhhccCCCCcccccc--CCCeEeecCCCCcCCCC
Q 013235 160 VVFFTNSGTEANELAIMMARLYT-----GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV--QTGVHHALNPDPYRGVF 232 (447)
Q Consensus 160 ~v~~~~sGseA~e~Aik~ar~~t-----~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~--~~g~~~~~~p~~~~~~~ 232 (447)
++++++||++|++.++++++.++ ++++|++.+++||+....+...++...+..... ..++..++.
T Consensus 88 ~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 159 (375)
T 2eh6_A 88 KVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-------- 159 (375)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT--------
T ss_pred eEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC--------
Confidence 89999999999999999876544 558999999999999988777654332211110 123333332
Q ss_pred CCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccc
Q 013235 233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA 312 (447)
Q Consensus 233 ~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~ 312 (447)
.| .++|++.+. +++++|+++|+++++|.+.++++++++|.++|++||+++|+||+|+|||++| ..+.++.
T Consensus 160 -~d----~~~l~~~l~----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~ 229 (375)
T 2eh6_A 160 -ND----IDSVYKLLD----EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTG-EFYAYQH 229 (375)
T ss_dssp -TC----HHHHHTTCC----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSGGGG
T ss_pred -ch----HHHHHHHhc----CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC-cchhhhh
Confidence 12 566666553 3789999999999999998899999999999999999999999999999888 4556677
Q ss_pred cCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 013235 313 HGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT 392 (447)
Q Consensus 313 ~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~ 392 (447)
++..||+++|||.+++|+|+|++++++++++.+....+..+|+.|+++++++.++|+.++ ++.++++++.+++++.|+
T Consensus 230 ~~~~~d~~s~SK~~~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~ 307 (375)
T 2eh6_A 230 FNLKPDVIALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKLK 307 (375)
T ss_dssp GTCCCSEEEECGGGGTTSCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEcccccCCCCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999988877765567889999999999999998876 678888999999998887
Q ss_pred HHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 393 ALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 393 ~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
++. . ..+++.|+++++++..+ ..++++.|+++||++.+
T Consensus 308 ~~~----~-~~~~~~g~~~~~~~~~~----------~~~~~~~l~~~gi~~~~ 345 (375)
T 2eh6_A 308 ELG----K-GKVKGRGLMLGLELERE----------CKDYVLKALEKGLLINC 345 (375)
T ss_dssp HTT----S-SEEEEETTEEEEECSSC----------CHHHHHHHHHTTEECEE
T ss_pred HHh----c-CCceEEEEEEEEEEcCc----------HHHHHHHHHHCCCEEec
Confidence 752 2 45678899999987421 24688889999999864
No 40
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=1.2e-35 Score=303.11 Aligned_cols=330 Identities=13% Similarity=0.065 Sum_probs=238.4
Q ss_pred CCCeEEEeecccEEEecC--CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCC--
Q 013235 80 SKPLNVVDGKMQYLFDEN--GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP-- 155 (447)
Q Consensus 80 ~~p~~~~~g~G~~l~d~d--G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~-- 155 (447)
..+++.++|+|+++||.+ |+.||||..+.. .+ ++||+|.+|+.++++...+....+..+...++++.+.+.++
T Consensus 40 ~~~~~~~~g~g~~~~d~~~~g~~~i~~~~~~~--~~-~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~g~~ 116 (421)
T 3l8a_A 40 FTTRPDRLNQFTYKWKTSENNPELLQMWVADM--DF-LPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEHDYA 116 (421)
T ss_dssp CSCCCCCTTTTBTTTGGGTTCTTCEECCSSCC--CS-CCCHHHHHHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCcccccCCCCCccccccCCCCCeeecccCCC--CC-CCCHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 456778899999999999 899999976643 33 48999999999999875333222335666778888887765
Q ss_pred CCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCC
Q 013235 156 GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGAD 235 (447)
Q Consensus 156 ~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d 235 (447)
...++|+|+|||+||++.|++.+.. ++++|++..++||+....+...+. .+..++.. +..+.|..|
T Consensus 117 ~~~~~v~~~~g~~ea~~~a~~~~~~--~gd~Vi~~~~~y~~~~~~~~~~g~-----------~~~~~~~~-~~~~~~~~d 182 (421)
T 3l8a_A 117 VVKEDILFIDGVVPAISIALQAFSE--KGDAVLINSPVYYPFARTIRLNDH-----------RLVENSLQ-IINGRFEID 182 (421)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHSC--TEEEEEEEESCCHHHHHHHHHTTE-----------EEEEEECE-EETTEEECC
T ss_pred CCHHHEEEcCCHHHHHHHHHHHhcC--CCCEEEECCCCcHHHHHHHHHCCC-----------EEEecccc-ccCCCeeeC
Confidence 4567899999999999999997643 457899999999997765544321 11122211 011112234
Q ss_pred hHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-----
Q 013235 236 GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF----- 310 (447)
Q Consensus 236 ~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~----- 310 (447)
+++|++.+.. .++++|+++++++++|.+ ++++++++|+++|++||++||+||||++|+++|.....+
T Consensus 183 ----~~~le~~i~~---~~~~~vil~~p~nptG~~-~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 254 (421)
T 3l8a_A 183 ----FEQLEKDIID---NNVKIYLLCSPHNPGGRV-WDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDA 254 (421)
T ss_dssp ----HHHHHHHHHH---TTEEEEEEESSBTTTTBC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCT
T ss_pred ----HHHHHHHhhc---cCCeEEEECCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCc
Confidence 6778887763 268899999999999954 578889999999999999999999999999988422222
Q ss_pred cccCCCCCEEEeecccc-CCccccccccC-HHHHHhhcCCc-ccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHH
Q 013235 311 EAHGVVPDIVTMAKGIG-NGIPLGAVVTT-PEIAEVLTRRN-YFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGS 385 (447)
Q Consensus 311 ~~~gv~pDivt~sK~lg-~G~pigav~~~-~~i~~~l~~~~-~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~ 385 (447)
+..+..+++.+++|+++ +|+|+|+++++ +++++.+.... ...++++|+++++++.++|+..++ +++.++++++.+
T Consensus 255 ~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~ 334 (421)
T 3l8a_A 255 SYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIK 334 (421)
T ss_dssp TGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred hhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 22355577888999998 89999999998 89988886543 345668999999999999985321 234444455555
Q ss_pred HHHHHHHHHHHhcCCeeeEeecceeEE-EEEeeCCCCCCCCHHHHHHHHHHHHh-CCceeec
Q 013235 386 YLKERLTALKDKYGIIGDVRGRGFLLG-VEFVTDRQLKTPAKAETLYIMDKMKG-ICALFFS 445 (447)
Q Consensus 386 ~l~~~L~~l~~~~~~i~~vrg~Gl~~g-iel~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~ 445 (447)
+|++.|++ ++.+..+++.|.++. +++..... ...++.+.|++ .||++.+
T Consensus 335 ~l~~~L~~----~~~i~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~l~~~~gi~v~~ 385 (421)
T 3l8a_A 335 LVIKELEA----KTKIKVMEPEGTYLVWLDFSAYAI-------AQPQLSEKLQNEAKVVLND 385 (421)
T ss_dssp HHHHHHHH----HCSCEEECCSBSSEEEEECGGGTC-------CTTHHHHHHHHTTCEECEE
T ss_pred HHHHHHHh----CCCceEeCCCeeEEEEEeccccCC-------CHHHHHHHHHHhCCEEEEC
Confidence 55555544 355777888888877 88743210 12467888875 5999864
No 41
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=100.00 E-value=8.9e-34 Score=289.88 Aligned_cols=333 Identities=14% Similarity=0.100 Sum_probs=247.8
Q ss_pred CHHHHHHHHhhhcCCccccccCCCeEEE-eecccEEEecCCCeEEEecCCcccccCC-CCCHHHHHHHHHHHHhcccccc
Q 013235 59 SADEILAKRKTFLSPSLFHLYSKPLNVV-DGKMQYLFDENGRRYLDAFGGIATVCCG-HCHPYVVDSIVNQIKRIQHSTV 136 (447)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~G~~l~d~dG~~ylD~~~g~~~~~lG-h~~p~v~~A~~~~l~~~~~~~~ 136 (447)
.++++.++..+....... ++.+..+. +++|+++|| ||++||||.+|. ++| |+||+|.+|+.+++++......
T Consensus 26 ~~~~~~~~~~~~~~~g~~--~r~~~~~~~~~~g~~~~~-~g~~~id~~~~~---~lg~~~~~~v~~a~~~~~~~~~~~~~ 99 (427)
T 2w8t_A 26 KFDGLIAERQKLLDSGVT--DPFAIVMEQVKSPTEAVI-RGKDTILLGTYN---YMGMTFDPDVIAAGKEALEKFGSGTC 99 (427)
T ss_dssp GGHHHHHHHHHHHHTTCC--CTTCCCCSEEEETTEEEE-TTEEEEECSCCC---TTCGGGCHHHHHHHHHHHHHHCSCCC
T ss_pred HHHHHHHHHHHHHHcCCc--ceeeeeccccCCCceEee-CCceEEEEECcc---cccCCCCHHHHHHHHHHHHHhCCCCc
Confidence 456677766666554411 23345677 999999999 999999999884 578 6899999999999987432111
Q ss_pred -----cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcc
Q 013235 137 -----LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK 211 (447)
Q Consensus 137 -----~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~ 211 (447)
...++...+|+++|+++++ .+.+++++||++||..+++.. +++.+.|.+...+|+....++...+
T Consensus 100 ~~~~~~G~~~~~~~l~~~la~~~g--~~~~i~~~sGs~a~~~al~~l---~~~gd~vl~~~~~h~~~~~~~~~~g----- 169 (427)
T 2w8t_A 100 GSRMLNGTFHDHMEVEQALRDFYG--TTGAIVFSTGYMANLGIISTL---AGKGEYVILDADSHASIYDGCQQGN----- 169 (427)
T ss_dssp SCTTTTCCCHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHH---SCTTCEEEEETTCCHHHHHHHHHSC-----
T ss_pred ccccccCCcHHHHHHHHHHHHHhC--CCceEEecCcHHHHHHHHHHh---cCCCCEEEECCcccHHHHHHHHHcC-----
Confidence 1245778899999999984 356789999999999998864 3444555556667776655554432
Q ss_pred ccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEE
Q 013235 212 FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLC 291 (447)
Q Consensus 212 ~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~ll 291 (447)
...+.+|. +| .++|++++....++++++|++||+++++|.+.+ +++|+++|++||+++
T Consensus 170 -------~~~~~~~~-------~d----~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~~g~~l 227 (427)
T 2w8t_A 170 -------AEIVRFRH-------NS----VEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAMV 227 (427)
T ss_dssp -------SEEEEECT-------TC----HHHHHHHHHTSCSSSCEEEEEESEETTTTEECC----HHHHHHHHHHTTCEE
T ss_pred -------CeeEEeCC-------CC----HHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEE
Confidence 22222221 34 677888887542237899999999999999886 999999999999999
Q ss_pred EEeccccCc--cccCCCcccccccCCCCC----EEEeeccccCCccccccccCHHHHHhhcCC--cccccCCCChHHHHH
Q 013235 292 IADEVQAGF--ARTGSHFWGFEAHGVVPD----IVTMAKGIGNGIPLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAA 363 (447)
Q Consensus 292 I~DEv~tGf--gr~G~~~~~~~~~gv~pD----ivt~sK~lg~G~pigav~~~~~i~~~l~~~--~~~~T~~~np~a~aa 363 (447)
|+||+|+++ +++| .. ..+.+++.|| +.+++|.+| .|.|++++++++++.+... .+..|++.||+.+++
T Consensus 228 i~Dea~~~~~~~~~g-~~-~~~~~~~~~~~di~~~s~sK~~g--~~gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa 303 (427)
T 2w8t_A 228 LVDEAHSMGFFGPNG-RG-VYEAQGLEGQIDFVVGTFSKSVG--TVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVAT 303 (427)
T ss_dssp EEECTTTTTTSSTTS-CC-HHHHTTCTTCCSEEEEESSSTTC--SCCEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHH
T ss_pred EEECCccccccCCCC-Cc-hHhhcCCCcCCcEEEecchhhhc--cCCCEEEeCHHHHHHHHHhcccccccCCCCHHHHHH
Confidence 999999974 4445 22 3466787776 668999996 5669999999998888754 234577889999999
Q ss_pred HHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEee-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCc
Q 013235 364 GHAVLKVIQK-DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICA 441 (447)
Q Consensus 364 ala~L~~i~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gv 441 (447)
+.++|+.+++ +++.+++++++++|++.|+++ .+.... .+ .|.++++++. +.....++.+.|+++||
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~--~~~~~~~~~~~~~--------~~~~~~~l~~~L~~~Gi 371 (427)
T 2w8t_A 304 ATTSIRKLMTAHEKRERLWSNARALHGGLKAM--GFRLGT--ETCDSAIVAVMLE--------DQEQAAMMWQALLDGGL 371 (427)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH--TCEESC--SSCCSSEEEEEES--------SHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc--CCcccC--CCCCCCEEEEEEC--------CHHHHHHHHHHHHHCCe
Confidence 9999998876 678899999999999999886 332211 33 6788898883 22346789999999999
Q ss_pred eeec
Q 013235 442 LFFS 445 (447)
Q Consensus 442 lv~~ 445 (447)
++.+
T Consensus 372 ~v~~ 375 (427)
T 2w8t_A 372 YVNM 375 (427)
T ss_dssp ECEE
T ss_pred EEee
Confidence 9864
No 42
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=7.2e-31 Score=264.44 Aligned_cols=316 Identities=16% Similarity=0.194 Sum_probs=234.4
Q ss_pred ccCCCeEEEeecccEEEecCCCeEEEecCCcccccCC-CCCHHHHHHHHHHHHhcccccc--c---ccchHHHHHHHHHH
Q 013235 78 LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCG-HCHPYVVDSIVNQIKRIQHSTV--L---YLNHAIADFAEALA 151 (447)
Q Consensus 78 ~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lG-h~~p~v~~A~~~~l~~~~~~~~--~---~~~~~~~elae~L~ 151 (447)
.++.|..+.+++|.|++| +|++||||.+| .++| |++|++.+++.++++...+... . ...+...+++++|+
T Consensus 23 ~~~~~~~~~~~~g~~v~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la 98 (399)
T 3tqx_A 23 LYKSERIITSPQNAEIKV-GEKEVLNFCAN---NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDIS 98 (399)
T ss_dssp CCCCCCCBCSCSSSEEEE-TTEEEEECSSC---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHH
T ss_pred CccccccccCCCCceEee-CCeeEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHH
Confidence 345677889999999999 99999999988 4678 7999999999999987643221 1 24667889999999
Q ss_pred HhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCC
Q 013235 152 SKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGV 231 (447)
Q Consensus 152 ~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~ 231 (447)
++++. +..++++||++|++.+++... .+++.|++. ..+|+.........+ ...+..|.
T Consensus 99 ~~~~~--~~~i~~~sGt~a~~~~l~~~~--~~gd~v~~~-~~~~~~~~~~~~~~g------------~~~~~~~~----- 156 (399)
T 3tqx_A 99 EFLGT--DDTILYSSCFDANGGLFETLL--GPEDAIISD-ELNHASIIDGIRLCK------------AQRYRYKN----- 156 (399)
T ss_dssp HHHTC--SEEEEESCHHHHHHTTHHHHC--CTTCEEEEE-TTCCHHHHHHHHSCC------------SEEEEECT-----
T ss_pred HHHCC--CcEEEECchHHHHHHHHHHhc--CCCCEEEEC-CcccHHHHHHHHHcC------------CceeEeCC-----
Confidence 99854 356677899999999987543 234455554 445555544444332 22222221
Q ss_pred CCCChHHHHHHHHHHHHccCC--CCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccc-cCc-cccCCCc
Q 013235 232 FGADGEMYAKDVQDLIDFGTS--GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ-AGF-ARTGSHF 307 (447)
Q Consensus 232 ~~~d~~~~~~~le~~i~~~~~--~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tGf-gr~G~~~ 307 (447)
.| .+++++.+..... .++++|+++++++++|.+.+ +++|.++|++||+++|+||+| .|+ ++.| .
T Consensus 157 --~d----~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~- 224 (399)
T 3tqx_A 157 --NA----MGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENG-R- 224 (399)
T ss_dssp --TC----TTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTS-C-
T ss_pred --CC----HHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCC-C-
Confidence 22 3456666654221 27899999999999999886 999999999999999999999 464 5554 2
Q ss_pred ccccccCC--CCCEE--EeeccccCCccccccccCHHHHHhhcCCc--ccccCCCChHHHHHHHHHHHHH-h-hhhHHHH
Q 013235 308 WGFEAHGV--VPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVI-Q-KDKLQNN 379 (447)
Q Consensus 308 ~~~~~~gv--~pDiv--t~sK~lg~G~pigav~~~~~i~~~l~~~~--~~~T~~~np~a~aaala~L~~i-~-~~~l~~~ 379 (447)
+..+.+++ .+|++ +++|.++ |+|.|++++++++++.+.... +..+...|+++++++.++|+.+ + .+++.++
T Consensus 225 ~~~~~~~~~~~~di~~~s~sK~~~-g~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 303 (399)
T 3tqx_A 225 GTPEYCGVADRVDILTGTLGKALG-GASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQ 303 (399)
T ss_dssp CHHHHHTCTTCCSEEEEESSSSSC-SSCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred chHHhhCCCCCCcEEEecchHhcc-cCceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHH
Confidence 34466676 78999 7999999 778899999999998886532 2234578899999999999987 3 3567888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 380 AHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 380 ~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
++++.+++.+.|+++ .+.. +++.|.++++++.+ .....++.+.|+++||++.+
T Consensus 304 ~~~~~~~l~~~L~~~--g~~~---~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~gi~v~~ 356 (399)
T 3tqx_A 304 LQENSRYFRAGMEKL--GFQL---VPGNHPIIPVMLGD--------AQLATNMADHLLQEGIYVVG 356 (399)
T ss_dssp HHHHHHHHHHHHHHH--TCCB---CCCSSSEEEEEEEC--------HHHHHHHHHHHHHTTEECCE
T ss_pred HHHHHHHHHHHHHHc--CCCc---CCCCCCEEEEEeCC--------HHHHHHHHHHHHHCCCEEee
Confidence 999999999999887 3332 36788999998842 23457899999999999863
No 43
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.98 E-value=4.7e-31 Score=266.52 Aligned_cols=317 Identities=15% Similarity=0.208 Sum_probs=234.7
Q ss_pred ccCCCeEEEeecccEEEecCCCeEEEecCCcccccCCC-CCHHHHHHHHHHHHhccccc--cccc---chHHHHHHHHHH
Q 013235 78 LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHST--VLYL---NHAIADFAEALA 151 (447)
Q Consensus 78 ~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~l~~~~~~~--~~~~---~~~~~elae~L~ 151 (447)
.++.|..+.+++|+|+||.+|++||||.+| .++|| ++|++.+|+.++++.+.+.. ..|. .+...+++++|+
T Consensus 24 ~~~~~~~~~~~~g~~~~~~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la 100 (401)
T 1fc4_A 24 LFKEERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLA 100 (401)
T ss_dssp CCCCCCCBCSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHH
T ss_pred CeeeeeeeccCCCceEEeeCCccEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHH
Confidence 345688899999999999999999999988 36897 89999999999998754321 1232 577889999999
Q ss_pred HhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCC
Q 013235 152 SKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGV 231 (447)
Q Consensus 152 ~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~ 231 (447)
++++.+ ..++++||++|++.+++.+. ++.+.|.+...+|+....++... |...+..|.
T Consensus 101 ~~~g~~--~~i~~~sGs~a~~~~~~~~~---~~gd~v~~~~~~~~~~~~~~~~~------------g~~~~~~~~----- 158 (401)
T 1fc4_A 101 AFLGME--DAILYSSCFDANGGLFETLL---GAEDAIISDALNHASIIDGVRLC------------KAKRYRYAN----- 158 (401)
T ss_dssp HHHTCS--EEEEESCHHHHHHTTHHHHC---CTTCEEEEETTCCHHHHHHHHTS------------CSEEEEECT-----
T ss_pred HHhCCC--cEEEeCChHHHHHHHHHHHc---CCCCEEEEcchhHHHHHHHHHHc------------CCceEEECC-----
Confidence 998654 56678999999999988653 34444445555665554443322 222333221
Q ss_pred CCCChHHHHHHHHHHHHccCCC--CeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccc-cCc-cccCCCc
Q 013235 232 FGADGEMYAKDVQDLIDFGTSG--HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ-AGF-ARTGSHF 307 (447)
Q Consensus 232 ~~~d~~~~~~~le~~i~~~~~~--~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tGf-gr~G~~~ 307 (447)
.| .+++++.+....++ ++++|++++.++++|.+.+ +++|.++|++||+++|+||+| .|+ +++| ..
T Consensus 159 --~d----~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g-~~ 227 (401)
T 1fc4_A 159 --ND----MQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENG-RG 227 (401)
T ss_dssp --TC----HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTS-CC
T ss_pred --CC----HHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCC-Cc
Confidence 23 46677766532111 5789999999999999876 999999999999999999999 488 3566 33
Q ss_pred ccccccCCCC--CEE--EeeccccCCccccccccCHHHHHhhcCCc--ccccCCCChHHHHHHHHHHHHHhh-hhHHHHH
Q 013235 308 WGFEAHGVVP--DIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNA 380 (447)
Q Consensus 308 ~~~~~~gv~p--Div--t~sK~lg~G~pigav~~~~~i~~~l~~~~--~~~T~~~np~a~aaala~L~~i~~-~~l~~~~ 380 (447)
+ .+.+++.+ |++ +++|.++++. .|++++++++++.+.... +..+++.|+++++++.++|+.+++ +++.+++
T Consensus 228 ~-~~~~~~~~~~di~~~s~sK~~~~~~-gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 305 (401)
T 1fc4_A 228 S-HEYCDVMGRVDIITGTLGKALGGAS-GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRL 305 (401)
T ss_dssp H-HHHTTCTTCCSEEEEESSSTTCSSS-CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred c-HHHcCCCcCCcEEEecchhhccCCC-CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 2 34455544 888 7899997654 599999999998876532 334778899999999999998764 5688889
Q ss_pred HHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 381 ~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+++.+++.+.|+++ .+..+ ++.|.++++++.+ .....++.+.|+++||++.+
T Consensus 306 ~~~~~~l~~~L~~~--g~~~~---~~~~~~~~~~~~~--------~~~~~~l~~~l~~~gi~v~~ 357 (401)
T 1fc4_A 306 WANARQFREQMSAA--GFTLA---GADHAIIPVMLGD--------AVVAQKFARELQKEGIYVTG 357 (401)
T ss_dssp HHHHHHHHHHHHHT--TCCBC---CSSSSEEEEEEEC--------HHHHHHHHHHHHHTTEECCE
T ss_pred HHHHHHHHHHHHHc--CCccc---CCCCCEEEEEcCC--------hHHHHHHHHHHHHCCcEEee
Confidence 99999999998876 33332 5788999998832 22356789999999999864
No 44
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.97 E-value=1.4e-30 Score=261.53 Aligned_cols=327 Identities=9% Similarity=-0.004 Sum_probs=229.7
Q ss_pred eEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCC--CCCce
Q 013235 83 LNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP--GNLKV 160 (447)
Q Consensus 83 ~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~--~~~~~ 160 (447)
++.++++|+++||.+|++||||..|.. .+ +.+|.|.+|+.++++...+.......+...++++.+.+.++ .+.++
T Consensus 11 ~~~~~~~g~~~~d~~g~~~i~~~~~~~--~~-~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~ 87 (391)
T 3dzz_A 11 HVPKRQGNSIKWGVLKEKELPMWIAEM--DF-KIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDW 87 (391)
T ss_dssp SCCCCCTTBTTTTTCCTTCEECCSSCC--SS-CCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGG
T ss_pred hhccCCCCccceeccCCCceeccccCC--CC-CCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHH
Confidence 667789999999999999999997743 34 48999999999998864332111234556677777777654 45678
Q ss_pred EEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCC-cCCCCCCChHHH
Q 013235 161 VFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP-YRGVFGADGEMY 239 (447)
Q Consensus 161 v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~-~~~~~~~d~~~~ 239 (447)
|+|++||++|++.+++... .+++.|++..++||+....+... |...+..|.. ..+.|..|
T Consensus 88 i~~~~g~~~a~~~~~~~l~--~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~~d---- 148 (391)
T 3dzz_A 88 CVFASGVVPAISAMVRQFT--SPGDQILVQEPVYNMFYSVIEGN-------------GRRVISSDLIYENSKYSVN---- 148 (391)
T ss_dssp EEEESCHHHHHHHHHHHHS--CTTCEEEECSSCCHHHHHHHHHT-------------TCEEEECCCEEETTEEECC----
T ss_pred EEECCCHHHHHHHHHHHhC--CCCCeEEECCCCcHHHHHHHHHc-------------CCEEEEeeeeecCCceeec----
Confidence 9999999999999999763 35688999999999876655433 2222222221 11222234
Q ss_pred HHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCC-CCC
Q 013235 240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPD 318 (447)
Q Consensus 240 ~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv-~pD 318 (447)
.++|++.+.. .++.+|+++..++++|.+. +++.+++|.++|++||+++|+||+|++|++.|.....+..++. .||
T Consensus 149 ~~~l~~~l~~---~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d 224 (391)
T 3dzz_A 149 WADLEEKLAT---PSVRMMVFCNPHNPIGYAW-SEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKN 224 (391)
T ss_dssp HHHHHHHHTS---TTEEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGG
T ss_pred HHHHHHHHhc---cCceEEEEECCCCCCCccc-CHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccC
Confidence 6778887753 2667777777788888875 5677999999999999999999999999988843444444442 378
Q ss_pred ----EEEeecccc-CCccccccccC-HHHHHhhcCCc-ccccCCCChHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHH
Q 013235 319 ----IVTMAKGIG-NGIPLGAVVTT-PEIAEVLTRRN-YFNTFGGNPVCTAAGHAVLKVIQ--KDKLQNNAHVVGSYLKE 389 (447)
Q Consensus 319 ----ivt~sK~lg-~G~pigav~~~-~~i~~~l~~~~-~~~T~~~np~a~aaala~L~~i~--~~~l~~~~~~~g~~l~~ 389 (447)
+.+++|.+| +|+|+|+++++ +++++.+.... ...+++.|+++++++.++|+..+ -++..++.+++.+++.+
T Consensus 225 ~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 304 (391)
T 3dzz_A 225 WVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYARE 304 (391)
T ss_dssp GEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 446889998 89999999997 99988876532 34567899999999999997632 12344555556666666
Q ss_pred HHHHHHHhcCCeeeEeec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235 390 RLTALKDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS 445 (447)
Q Consensus 390 ~L~~l~~~~~~i~~vrg~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~ 445 (447)
.|++. ++.+..+... |.++.+++.... ....++.+.|+ ++||++.+
T Consensus 305 ~l~~~---~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~ 352 (391)
T 3dzz_A 305 FLAKE---VPEVKVLDSNASYLAWVDISALG-------MNAEDFCKYLREKTGLIISA 352 (391)
T ss_dssp HHHHH---CTTSEECCCCBSSEEEEECGGGC-------SCHHHHHHHHHHHHCEECEE
T ss_pred HHHhh---CCCcEEeccCceEEEEEehhhcC-------CCHHHHHHHHHHhCCEEEeC
Confidence 65552 2333333334 444557764211 01457888896 89999874
No 45
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.97 E-value=5.3e-30 Score=256.69 Aligned_cols=327 Identities=9% Similarity=0.014 Sum_probs=215.5
Q ss_pred CeEEEeecccEEEecC-CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCC--CCC
Q 013235 82 PLNVVDGKMQYLFDEN-GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP--GNL 158 (447)
Q Consensus 82 p~~~~~g~G~~l~d~d-G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~--~~~ 158 (447)
+++..+++|+++||.+ |+.+|||..|.. .++ .||+|.+|+.++++...+.......+...++++.|++.++ .+.
T Consensus 6 ~~~~~~~~g~~~~d~~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~ 82 (383)
T 3kax_A 6 KTVNRRGTHSIKWDTYKNEELIHAWIADM--DFE-VPQPIQTALKKRIEHPIFGYTLPPENIGDIICNWTKKQYNWDIQK 82 (383)
T ss_dssp -------------CCCSSSCCEECCCSSC--SSC-CCHHHHHHHHHHHHSCCCCCCCCCTTHHHHHHHHHHHHHCCCCCG
T ss_pred ceeeccCCCceeeeccCCCCeeecccccC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCh
Confidence 4667889999999954 689999998753 444 8999999999999864222122246677888888888765 456
Q ss_pred ceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCc-CCCCCCChH
Q 013235 159 KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPY-RGVFGADGE 237 (447)
Q Consensus 159 ~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~-~~~~~~d~~ 237 (447)
++|+|++||++|++.+++.+. .+++.|++..++||+....+... |...+..|... .+.|..|
T Consensus 83 ~~v~~~~g~~~a~~~~~~~l~--~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~~d-- 145 (383)
T 3kax_A 83 EWIVFSAGIVPALSTSIQAFT--KENESVLVQPPIYPPFFEMVTTN-------------NRQLCVSPLQKQNDTYAID-- 145 (383)
T ss_dssp GGEEEESCHHHHHHHHHHHHC--CTTCEEEECSSCCHHHHHHHHHT-------------TCEEEECCCEEETTEEECC--
T ss_pred hhEEEcCCHHHHHHHHHHHhC--CCCCEEEEcCCCcHHHHHHHHHc-------------CCEEEeccceecCCcEEEc--
Confidence 789999999999999998763 35688999999999877554432 22222222211 1112234
Q ss_pred HHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccc-----
Q 013235 238 MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA----- 312 (447)
Q Consensus 238 ~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~----- 312 (447)
.++|++.+. + ++++|+++..++++|.+. |.+.+++|.++|++||+++|+||+|++|+++|.....+..
T Consensus 146 --~~~l~~~l~---~-~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 218 (383)
T 3kax_A 146 --FEHLEKQFQ---Q-GVKLMLLCSPHNPIGRVW-KKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEEL 218 (383)
T ss_dssp --HHHHHHHHT---T-TCCEEEEESSBTTTTBCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHH
T ss_pred --HHHHHHHhC---c-CCeEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCccc
Confidence 677887773 2 455666676788888765 6788999999999999999999999999888732222221
Q ss_pred cCCCCCEEEeecccc-CCcccccccc-CHHHHHhhcCCc-ccccCCCChHHHHHHHHHHHHHh--hhhHHHHHHHHHHHH
Q 013235 313 HGVVPDIVTMAKGIG-NGIPLGAVVT-TPEIAEVLTRRN-YFNTFGGNPVCTAAGHAVLKVIQ--KDKLQNNAHVVGSYL 387 (447)
Q Consensus 313 ~gv~pDivt~sK~lg-~G~pigav~~-~~~i~~~l~~~~-~~~T~~~np~a~aaala~L~~i~--~~~l~~~~~~~g~~l 387 (447)
.+..+++.+++|.++ +|+|+|++++ ++++++.+.... ...+++.|+++++++.++|+..+ -+++.+++++..+++
T Consensus 219 ~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l 298 (383)
T 3kax_A 219 AARTITCMAPSKTFNIAGLQASIIIIPNEKLRQAFTSIQYRQGFHGLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFA 298 (383)
T ss_dssp HTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred cCcEEEEEEChhhccCcchhheEEEeCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 244455667899999 8999999988 688888776543 23456889999999999886432 123444455555555
Q ss_pred HHHHHHHHHhcCCeeeEeecceeEE-EEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235 388 KERLTALKDKYGIIGDVRGRGFLLG-VEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS 445 (447)
Q Consensus 388 ~~~L~~l~~~~~~i~~vrg~Gl~~g-iel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~ 445 (447)
.+.|++. ++.+..+++.|.++. +++.... ....++.+.|+ ++||++.+
T Consensus 299 ~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~ 348 (383)
T 3kax_A 299 CEYIKDH---IPTLSVMKPEGSFLLWIDCSALN-------LSQDERTKLLEEKGKIIVEP 348 (383)
T ss_dssp HHHHHHH---CTTCEECCCSBSSEEEEECGGGC-------CCHHHHHHHHHHTSCEECEE
T ss_pred HHHHHhh---CCCceEecCCceEEEEEEccccC-------CCHHHHHHHHHhhCCEEeEC
Confidence 5555442 333444555555544 7764321 01457888998 68999875
No 46
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.97 E-value=3.6e-29 Score=251.91 Aligned_cols=322 Identities=11% Similarity=0.022 Sum_probs=201.2
Q ss_pred EEEeecccEEEecCCC-----eEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccccc---ch-HHHHHHHHHHHhC
Q 013235 84 NVVDGKMQYLFDENGR-----RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL---NH-AIADFAEALASKM 154 (447)
Q Consensus 84 ~~~~g~G~~l~d~dG~-----~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~---~~-~~~elae~L~~~~ 154 (447)
+-.+|+|+++||.+|+ ++|||..+.. .+| .+|+|.+|+.++++... ..|. .+ ...++++.+.+..
T Consensus 8 ~~~~~~~~~~~d~~~~~~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~---~~y~~~~~~~lr~~la~~l~~~~ 81 (390)
T 1d2f_A 8 VDRHGTWCTQWDYVADRFGTADLLPFTISDM--DFA-TAPCIIEALNQRLMHGV---FGYSRWKNDEFLAAIAHWFSTQH 81 (390)
T ss_dssp ----------------------CEECCSSSC--SSC-CCHHHHHHHHHHHTTCC---CCCCCSCCHHHHHHHHHHHHHHS
T ss_pred ccccCCCccchhhhccccCCCCeeEeeecCC--CCC-CCHHHHHHHHHHHhCCC---CCCCCCChHHHHHHHHHHHHHhc
Confidence 4468999999999998 7899977654 577 78999999999986521 1222 23 4445555555444
Q ss_pred C--CCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCC
Q 013235 155 P--GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF 232 (447)
Q Consensus 155 ~--~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~ 232 (447)
+ .+.++|++++||++|++.+++... .++++|++.+++||+....+...+. .+..++.. ...+.|
T Consensus 82 g~~~~~~~v~~t~g~~~al~~~~~~l~--~~gd~vl~~~p~y~~~~~~~~~~g~-----------~~~~v~~~-~~~~~~ 147 (390)
T 1d2f_A 82 YTAIDSQTVVYGPSVIYMVSELIRQWS--ETGEGVVIHTPAYDAFYKAIEGNQR-----------TVMPVALE-KQADGW 147 (390)
T ss_dssp CCCCCGGGEEEESCHHHHHHHHHHHSS--CTTCEEEEEESCCHHHHHHHHHTTC-----------EEEEEECE-ECSSSE
T ss_pred CCCCCHHHEEEcCCHHHHHHHHHHHhc--CCCCEEEEcCCCcHHHHHHHHHCCC-----------EEEEeecc-cCCCcc
Confidence 3 456789999999999999999653 2457899999999997765543211 11222211 001123
Q ss_pred CCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccc
Q 013235 233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA 312 (447)
Q Consensus 233 ~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~ 312 (447)
..| .++|++.+.. .++++|++...++++|.+. +.+++++|.++|++||+++|+||+|++|.++|..+..+.
T Consensus 148 ~~d----~~~l~~~l~~---~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~- 218 (390)
T 1d2f_A 148 FCD----MGKLEAVLAK---PECKIMLLCSPQNPTGKVW-TCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWS- 218 (390)
T ss_dssp ECC----HHHHHHHHTS---TTEEEEEEESSCTTTCCCC-CTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGG-
T ss_pred ccC----HHHHHHHhcc---CCCeEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHH-
Confidence 234 5778877753 2566666555577788775 678999999999999999999999999988773222222
Q ss_pred cCCCC---C-EEEeecccc-CCccccccccC-HHHHHhhcCCcc-cccC-CCChHHHHHHHHHHHHHhh--hhHHHHHHH
Q 013235 313 HGVVP---D-IVTMAKGIG-NGIPLGAVVTT-PEIAEVLTRRNY-FNTF-GGNPVCTAAGHAVLKVIQK--DKLQNNAHV 382 (447)
Q Consensus 313 ~gv~p---D-ivt~sK~lg-~G~pigav~~~-~~i~~~l~~~~~-~~T~-~~np~a~aaala~L~~i~~--~~l~~~~~~ 382 (447)
.+.+ | +.+++|.++ +|+|+|+++++ +++++.+..... ..+| +.|+++++++.++|+..++ ++..+++++
T Consensus 219 -~~~~~~~d~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 297 (390)
T 1d2f_A 219 -NVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKD 297 (390)
T ss_dssp -GTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred -HcchhhHhhccCccHhhcccChhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 2222 3 788999998 89999999985 788887765444 4566 7899999999999975321 123334444
Q ss_pred HHHHHHHHHHHHHHhcCCeeeEeecc-eeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235 383 VGSYLKERLTALKDKYGIIGDVRGRG-FLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS 445 (447)
Q Consensus 383 ~g~~l~~~L~~l~~~~~~i~~vrg~G-l~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~ 445 (447)
+.+++.+.|++. ++.+..+++.| +++++++.... ....++.+.|+ ++||++.+
T Consensus 298 ~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~l~~~~gi~v~~ 352 (390)
T 1d2f_A 298 NLTYIADKMNAA---FPELNWQIPQSTYLAWLDLRPLN-------IDDNALQKALIEQEKVAIMP 352 (390)
T ss_dssp HHHHHHHHHHHH---CSSCCCCCCSBCSEEEEECGGGC-------CCHHHHHHHHHHTTCEECEE
T ss_pred HHHHHHHHHHhh---CCCCEEecCCccEEEEEEccccC-------CCHHHHHHHHHHHcCEEeeC
Confidence 444454444431 33344445555 45567774210 01356888998 68999864
No 47
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.97 E-value=1.3e-28 Score=247.28 Aligned_cols=313 Identities=16% Similarity=0.180 Sum_probs=231.1
Q ss_pred ccCCCeEEEeecccEEEecCCCeEEEecCCcccccCC-CCCHHHHHHHHHHHHhccc--ccccc---cchHHHHHHHHHH
Q 013235 78 LYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCG-HCHPYVVDSIVNQIKRIQH--STVLY---LNHAIADFAEALA 151 (447)
Q Consensus 78 ~~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lG-h~~p~v~~A~~~~l~~~~~--~~~~~---~~~~~~elae~L~ 151 (447)
+++.|+.+.+++|++++ .+|++||||.+|.. +| |.+|++.+|+.++++...+ ....| ..+...+++++|+
T Consensus 19 ~~~~~~~~~~~~g~~~~-~~g~~~id~~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la 94 (384)
T 1bs0_A 19 ALRRRYPVAQGAGRWLV-ADDRQYLNFSSNDY---LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELA 94 (384)
T ss_dssp CCCCCCCCSBCSSSEEE-ETTEEEEECSCCCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHH
T ss_pred CccccccccCCCCceEE-ECCceEEEeeccCc---cCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHH
Confidence 34668889999999999 89999999998743 67 5899999999999987432 11222 3477889999999
Q ss_pred HhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCC
Q 013235 152 SKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGV 231 (447)
Q Consensus 152 ~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~ 231 (447)
++++. +.+++++||++|+..+++.. .++.+.|.+...+|+....++...+ ...+..|.
T Consensus 95 ~~~g~--~~~i~~~sGt~a~~~~~~~~---~~~gd~v~~~~~~~~~~~~~~~~~g------------~~~~~~~~----- 152 (384)
T 1bs0_A 95 EWLGY--SRALLFISGFAANQAVIAAM---MAKEDRIAADRLSHASLLEAASLSP------------SQLRRFAH----- 152 (384)
T ss_dssp HHHTC--SEEEEESCHHHHHHHHHHHH---CCTTCEEEEETTCCHHHHHHHHTSS------------SEEEEECT-----
T ss_pred HHhCC--CcEEEeCCcHHHHHHHHHHh---CCCCcEEEEcccccHHHHHHHHHcC------------CCEEEeCC-----
Confidence 99854 46778899999999999864 3445556666677776665554432 22222221
Q ss_pred CCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc-Cc-cccCCCccc
Q 013235 232 FGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GF-ARTGSHFWG 309 (447)
Q Consensus 232 ~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-Gf-gr~G~~~~~ 309 (447)
.| .++|++.+....+ ++++|+++++++++|.+.+ +++|.++|++||+++|+||+|. |+ +++| ..+
T Consensus 153 --~d----~~~l~~~l~~~~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~- 219 (384)
T 1bs0_A 153 --ND----VTHLARLLASPCP-GQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQG-RGS- 219 (384)
T ss_dssp --TC----HHHHHHHHHSCCS-SCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGG-CCH-
T ss_pred --CC----HHHHHHHHHhcCC-CCeEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCC-Cch-
Confidence 23 5678888875322 4689999999999999886 9999999999999999999995 43 5556 332
Q ss_pred ccccCCCCCEE--EeeccccCCccccccccCHHHHHhhcCC--cccccCCCChHHHHHHHHHHHHHhh---hhHHHHHHH
Q 013235 310 FEAHGVVPDIV--TMAKGIGNGIPLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHV 382 (447)
Q Consensus 310 ~~~~gv~pDiv--t~sK~lg~G~pigav~~~~~i~~~l~~~--~~~~T~~~np~a~aaala~L~~i~~---~~l~~~~~~ 382 (447)
.+.++..||++ +++|.++. +.|++++++++++.+... .+..+++.|+++++++.++|+.+++ +++.+++++
T Consensus 220 ~~~~~~~~di~~~s~sK~~~~--~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~ 297 (384)
T 1bs0_A 220 CWLQKVKPELLVVTFGKGFGV--SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAA 297 (384)
T ss_dssp HHHTTCCCSEEEEESSSTTSS--CCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHhcCCCCcEEEeeccchhhc--cCcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 25566779998 89999973 448999999998877642 2334557899999999999998863 356777888
Q ss_pred HHHHHHHHHHHHHHhcCCeeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 383 VGSYLKERLTALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 383 ~g~~l~~~L~~l~~~~~~i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+.+++.+.|+++ ++ .+ .+.|.++++++.+ .....++.+.|+++||++.+
T Consensus 298 ~~~~l~~~L~~~----g~--~~~~~~~~~~~~~~~~--------~~~~~~l~~~l~~~gi~v~~ 347 (384)
T 1bs0_A 298 LITRFRAGVQDL----PF--TLADSCSAIQPLIVGD--------NSRALQLAEKLRQQGCWVTA 347 (384)
T ss_dssp HHHHHHHHHTTS----SC--EECSCCSSBCCEEEES--------HHHHHHHHHHHHHTTEECCE
T ss_pred HHHHHHHHHHhc----CC--cccCCCCCEEEEEeCC--------HHHHHHHHHHHHHCCcEEEe
Confidence 888888877664 21 23 3678888888732 22356789999999999864
No 48
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.97 E-value=1.2e-30 Score=261.09 Aligned_cols=319 Identities=13% Similarity=0.046 Sum_probs=218.5
Q ss_pred EEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccc-cccccchHHHHHHHHHHHhCC--CCCce
Q 013235 84 NVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS-TVLYLNHAIADFAEALASKMP--GNLKV 160 (447)
Q Consensus 84 ~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~-~~~~~~~~~~elae~L~~~~~--~~~~~ 160 (447)
...+|+|+++||.+|++||||.+|.. .++ .+|+|.+|+.+++....+. .... .+....+++.+.+..+ .+.++
T Consensus 8 ~~~~~~g~~~~d~~g~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~-~~lr~~la~~~~~~~~~~~~~~~ 83 (377)
T 3fdb_A 8 EDLRARNTMKWTRYGQGVLPLWVAES--DFS-TCPAVLQAITDAVQREAFGYQPDG-SLLSQATAEFYADRYGYQARPEW 83 (377)
T ss_dssp HHHHHTCCHHHHSSCTTSEECCSSCC--CSC-CCHHHHHHHHHHHHTTCCSSCCSS-CCHHHHHHHHHHHHHCCCCCGGG
T ss_pred HHhcCCCCceeeccCCCeeeecccCC--CCC-CCHHHHHHHHHHHHcCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCHHH
Confidence 34589999999999999999998853 455 8999999999999863221 1111 3444445555544322 45678
Q ss_pred EEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHH
Q 013235 161 VFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA 240 (447)
Q Consensus 161 v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~ 240 (447)
+++++||++|++.+++... .+++.|++..++||+....+...+. .+..++.... .| .
T Consensus 84 i~~t~g~~~a~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~g~-----------~~~~~~~~~~------~d----~ 140 (377)
T 3fdb_A 84 IFPIPDVVRGLYIAIDHFT--PAQSKVIVPTPAYPPFFHLLSATQR-----------EGIFIDATGG------IN----L 140 (377)
T ss_dssp EEEESCHHHHHHHHHHHHS--CTTCCEEEEESCCTHHHHHHHHHTC-----------CEEEEECTTS------CC----H
T ss_pred EEEeCChHHHHHHHHHHhc--CCCCEEEEcCCCcHhHHHHHHHcCC-----------EEEEccCCCC------CC----H
Confidence 9999999999999998653 2567899999999987765544321 1222322111 23 6
Q ss_pred HHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccC-CCc---ccccccCCC
Q 013235 241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG-SHF---WGFEAHGVV 316 (447)
Q Consensus 241 ~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G-~~~---~~~~~~gv~ 316 (447)
+++++.+.. +..+.++.+| ++++|.+. +.+.+++|.++|++||+++|+||+|++|+++| ... +.++..+..
T Consensus 141 ~~l~~~l~~---~~~~v~i~~p-~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~ 215 (377)
T 3fdb_A 141 HDVEKGFQA---GARSILLCNP-YNPLGMVF-APEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVC 215 (377)
T ss_dssp HHHHHHHHT---TCCEEEEESS-BTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHE
T ss_pred HHHHHHhcc---CCCEEEEeCC-CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcE
Confidence 778888764 2335555555 77888765 67779999999999999999999999998877 322 222223444
Q ss_pred CCEEEeecccc-CCcccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHH
Q 013235 317 PDIVTMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLT 392 (447)
Q Consensus 317 pDivt~sK~lg-~G~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~ 392 (447)
+++.+++|.+| +|+|+|++++ ++++++.+....+..+++.|+++++++.++|+..++ ++..++.+++.+++.+.|+
T Consensus 216 i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 295 (377)
T 3fdb_A 216 ITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIP 295 (377)
T ss_dssp EEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeChHhccCcchhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778999997 7999997665 789988887666667899999999999999985422 3345555666666666665
Q ss_pred HHHHhcCCeeeEeeccee-EEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235 393 ALKDKYGIIGDVRGRGFL-LGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS 445 (447)
Q Consensus 393 ~l~~~~~~i~~vrg~Gl~-~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~ 445 (447)
+. ++.+..++..|.+ +++++..... ..++++.|+++ ||++.+
T Consensus 296 ~~---~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~gi~v~~ 339 (377)
T 3fdb_A 296 KR---IPGAKITPMQATYLMWIDFRDTTI--------EGSPSEFFIEKAKVAMND 339 (377)
T ss_dssp HH---STTCEECCCSBCSEEEEECTTSCC--------CSCHHHHHHHHHCEECEE
T ss_pred hh---CCCceEecCCeeEEEEEECcccCC--------CHHHHHHHHHhCCEEecC
Confidence 53 2333334444444 4677743211 12467777776 999874
No 49
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.97 E-value=5e-30 Score=257.58 Aligned_cols=325 Identities=12% Similarity=0.040 Sum_probs=224.0
Q ss_pred eEEEeecccEEEecCCCeE-----EEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCC--
Q 013235 83 LNVVDGKMQYLFDENGRRY-----LDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP-- 155 (447)
Q Consensus 83 ~~~~~g~G~~l~d~dG~~y-----lD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~-- 155 (447)
++..+++|+++||.+|++| |||..+.. -.+.+|+|.+|+.+++....+....+..+...++++.|++.++
T Consensus 11 ~~~~~~~g~~~~d~~~~~~~~~~~i~l~~~~~---~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~ 87 (391)
T 4dq6_A 11 IVDRSNNFSSKWSEMEKKYGTNDLLPMWVADM---DFKAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWK 87 (391)
T ss_dssp CCCCTTTTBHHHHCHHHHHSCSCSEECCSSSC---SSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCCC
T ss_pred ccccccCCceeeeecccccCCCCceeccccCC---CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 4456889999999987655 99987753 2347899999999999864333233456677888888888765
Q ss_pred CCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCC--cCCCCC
Q 013235 156 GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP--YRGVFG 233 (447)
Q Consensus 156 ~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~--~~~~~~ 233 (447)
.+.+++++++||++|++.+++.+. .+++.|++..++||+....+... |...+..|.. ..+.|.
T Consensus 88 ~~~~~v~~~~g~~~a~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~~ 152 (391)
T 4dq6_A 88 IKSEWLIYSPGVIPAISLLINELT--KANDKIMIQEPVYSPFNSVVKNN-------------NRELIISPLQKLENGNYI 152 (391)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHS--CTTCEEEECSSCCTHHHHHHHHT-------------TCEEEECCCEECTTSCEE
T ss_pred CcHHHeEEcCChHHHHHHHHHHhC--CCCCEEEEcCCCCHHHHHHHHHc-------------CCeEEeeeeeecCCCceE
Confidence 456789999999999999999763 35688999999999876655433 2222222222 112222
Q ss_pred CChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc
Q 013235 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH 313 (447)
Q Consensus 234 ~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~ 313 (447)
.| .+++++.+.. +.+++++..++++|.+. +++.+++|.++|++||+++|+||+|++|+++|.....+..+
T Consensus 153 ~d----~~~l~~~l~~-----~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 222 (391)
T 4dq6_A 153 MD----YEDIENKIKD-----VKLFILCNPHNPVGRVW-TKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASI 222 (391)
T ss_dssp CC----HHHHHHHCTT-----EEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred ee----HHHHHHHhhc-----CCEEEEECCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHc
Confidence 34 5677777642 66677766688888765 67779999999999999999999999998887422222222
Q ss_pred -----CCCCCEEEeecccc-CCccccccccCH-HHHHhhcCC-cccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHH
Q 013235 314 -----GVVPDIVTMAKGIG-NGIPLGAVVTTP-EIAEVLTRR-NYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVV 383 (447)
Q Consensus 314 -----gv~pDivt~sK~lg-~G~pigav~~~~-~i~~~l~~~-~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~ 383 (447)
+....+.+++|.+| +|+|+|++++++ ++++.+... .+..+++.|+++++++.++|+..++ ++..++.+++
T Consensus 223 ~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 302 (391)
T 4dq6_A 223 SKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLESFLEYLESN 302 (391)
T ss_dssp CHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 22233557899998 799999999875 888877653 2345678899999999999975321 2233444444
Q ss_pred HHHHHHHHHHHHHhcCCeeeEeecceeEE-EEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235 384 GSYLKERLTALKDKYGIIGDVRGRGFLLG-VEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS 445 (447)
Q Consensus 384 g~~l~~~L~~l~~~~~~i~~vrg~Gl~~g-iel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~ 445 (447)
.+++.+.|++. ++.+..+++.|.++. +++.... ....++.+.|+++ ||++.+
T Consensus 303 ~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~ 356 (391)
T 4dq6_A 303 IDFAIKYINEN---MPKLKVRKPEGTYLLWVDFSALG-------LSDEELESILVQKGKVALNQ 356 (391)
T ss_dssp HHHHHHHHHHH---CTTSEECCCSBSSEEEEECGGGC-------CCHHHHHHHHHHTTCEECEE
T ss_pred HHHHHHHHHhh---CCCCEecCCCccEEEEEEhhhcC-------CCHHHHHHHHHHhCCEEeeC
Confidence 44444444432 344445556665554 7764311 0145788999998 999864
No 50
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.97 E-value=1.2e-29 Score=257.26 Aligned_cols=302 Identities=16% Similarity=0.092 Sum_probs=222.9
Q ss_pred eecccEEEecCCCeEEEecCCcccccCCC-CCHHHHHHHHHHHHhccccc---c--cccchHHHHHHHHHHHhCCCCCce
Q 013235 87 DGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHST---V--LYLNHAIADFAEALASKMPGNLKV 160 (447)
Q Consensus 87 ~g~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~l~~~~~~~---~--~~~~~~~~elae~L~~~~~~~~~~ 160 (447)
++.+.+++|.+|++||||.++. .+|+ .||+|.+|+.+++++..... . ....+...+++++|+++++. +.
T Consensus 47 ~~~~~~~~~~~g~~~ld~~s~~---~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~--~~ 121 (409)
T 3kki_A 47 NGKHLVLGKQASPDDIILQSND---YLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGF--DE 121 (409)
T ss_dssp TSSCTTCCCCCCTTSEECCCSC---TTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTC--SE
T ss_pred CCCeeeeCCCCCCceEEeeccC---ccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCC--Ce
Confidence 5678889999999999998864 3444 58999999999998853211 1 11235567899999998853 45
Q ss_pred EEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHH
Q 013235 161 VFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA 240 (447)
Q Consensus 161 v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~ 240 (447)
+++++||++|++.+++... ++.+.|.+...+|+....++...+ ...++++. .| .
T Consensus 122 ~i~~~sGt~a~~~~l~~~~---~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~~~~-------~d----~ 175 (409)
T 3kki_A 122 CLLSQSGWNANVGLLQTIC---QPNTNVYIDFFAHMSLWEGARYAN------------AQAHPFMH-------NN----C 175 (409)
T ss_dssp EEEESCHHHHHHHHHHHHC---CTTCEEEEETTSCHHHHHHHHHTT------------CEEEEECT-------TC----H
T ss_pred EEEecchHHHHHHHHHHhc---CCCCEEEECCCcCHHHHHHHHHcC------------CeEEEecC-------CC----H
Confidence 6788999999999998543 444445555666666655554432 22222221 23 6
Q ss_pred HHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccC--ccccCCCcccccccCC--C
Q 013235 241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG--FARTGSHFWGFEAHGV--V 316 (447)
Q Consensus 241 ~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG--fgr~G~~~~~~~~~gv--~ 316 (447)
++|++.+... ++++|+++++++++|.+.+ +++|+++|++||++||+||+|++ ||++| ..+. +.+++ .
T Consensus 176 ~~le~~l~~~---~~~~vi~~~~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g-~~~~-~~~~~~~~ 246 (409)
T 3kki_A 176 DHLRMLIQRH---GPGIIVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNG-AGLL-AELGLTRE 246 (409)
T ss_dssp HHHHHHHHHH---CSCEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGG-CCHH-HHHTCGGG
T ss_pred HHHHHHHHhc---CCeEEEECCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCC-Ccch-hhcCCCCC
Confidence 7788888642 3589999999999998876 99999999999999999999998 88888 3333 55666 5
Q ss_pred CCE--EEeeccccCCccccccccCHHHHHhhcCCcc--cccCCCChHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHH
Q 013235 317 PDI--VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY--FNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHVVGSYLKERL 391 (447)
Q Consensus 317 pDi--vt~sK~lg~G~pigav~~~~~i~~~l~~~~~--~~T~~~np~a~aaala~L~~i~~-~~l~~~~~~~g~~l~~~L 391 (447)
+|| .+++|++++| .|++++++++++.+..... ..+...+++++++++++|+.+++ +++.++++++.++|++.|
T Consensus 247 ~di~~~s~sK~~~~~--gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L 324 (409)
T 3kki_A 247 VHFMTASLAKTFAYR--AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGL 324 (409)
T ss_dssp CSEEEEESSSTTCSS--CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeecchhhCCC--ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 778 5789999876 5889999988877654322 23334789999999999998865 467788889999999988
Q ss_pred HHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235 392 TALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF 444 (447)
Q Consensus 392 ~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~ 444 (447)
+++ .+. +.+.|.++++.+.+ .....++.+.|+++||++.
T Consensus 325 ~~~--g~~----~~~~~~~~~~~~~~--------~~~~~~~~~~L~~~Gv~v~ 363 (409)
T 3kki_A 325 SQL--GLT----IRSESQIIGLETGD--------ERNTEKVRDYLESNGVFGS 363 (409)
T ss_dssp HTT--TCC----CCCSSSEEEEEEES--------HHHHHHHHHHHHHTTEECE
T ss_pred HHc--CCc----cCCCCCEEEEEeCC--------HHHHHHHHHHHHHCCceEe
Confidence 876 332 34688999999843 2335678999999999985
No 51
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.97 E-value=6.8e-29 Score=246.78 Aligned_cols=311 Identities=16% Similarity=0.101 Sum_probs=212.3
Q ss_pred CeEEEeecccEEEe-cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCce
Q 013235 82 PLNVVDGKMQYLFD-ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKV 160 (447)
Q Consensus 82 p~~~~~g~G~~l~d-~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~ 160 (447)
++.+.+|...+.++ .+|+++|||.+|.. +++ .+|+|.+|+.++++.. ..|+++...+++++|+++++.+.++
T Consensus 8 ~~~~~~g~~~~~~~~~~~~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~l~~~la~~~~~~~~~ 80 (361)
T 3ftb_A 8 GDLMIHGGDIYTEGVFKGRELLDYSSNIN--PLG-IPKSFLNNIDEGIKNL----GVYPDVNYRRLNKSIENYLKLKDIG 80 (361)
T ss_dssp --------------------CEETTCCCC--TTC-SCHHHHTTHHHHHHGG----GSCCCTTCHHHHHHHHHHHTCCSCE
T ss_pred CccccCCCCHHHHhhcCCCCEEEecCCCC--CCC-CCHHHHHHHHHHHHHh----cCCCCccHHHHHHHHHHHhCCCcce
Confidence 34455555444444 48999999999876 455 6899999999998874 2345566788999999998766789
Q ss_pred EEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHH
Q 013235 161 VFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA 240 (447)
Q Consensus 161 v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~ 240 (447)
++|++||++|++.+++.+ ++|++..++||+....+... |...+..|....+.+ + +
T Consensus 81 i~~~~g~t~al~~~~~~~------d~vi~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~--~----~ 135 (361)
T 3ftb_A 81 IVLGNGASEIIELSISLF------EKILIIVPSYAEYEINAKKH-------------GVSVVFSYLDENMCI--D----Y 135 (361)
T ss_dssp EEEESSHHHHHHHHHTTC------SEEEEEESCCTHHHHHHHHT-------------TCEEEEEECCTTSCC--C----H
T ss_pred EEEcCCHHHHHHHHHHHc------CcEEEecCChHHHHHHHHHc-------------CCeEEEeecCcccCC--C----H
Confidence 999999999999999855 78999999999876655433 222222222111122 2 4
Q ss_pred HHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE
Q 013235 241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV 320 (447)
Q Consensus 241 ~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv 320 (447)
+++++.+.. ..+.++.+| ++++|.+. +.+.+++|.++|++||+++|+||+|++|.+.+ ........+..++++
T Consensus 136 ~~l~~~l~~----~~~v~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~i 208 (361)
T 3ftb_A 136 EDIISKIDD----VDSVIIGNP-NNPNGGLI-NKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDP-SSSFVGEIKNYSCLF 208 (361)
T ss_dssp HHHHHHTTT----CSEEEEETT-BTTTTBCC-CHHHHHHHHHHHHHHTCEEEEECSSGGGTCCT-TSSSGGGTTTCSSEE
T ss_pred HHHHHhccC----CCEEEEeCC-CCCCCCCC-CHHHHHHHHHHhhhcCCEEEEECcchhhcCCc-ccchhHhcccCCCEE
Confidence 677777652 234444555 66777765 67789999999999999999999999987752 233334444445544
Q ss_pred ---Eeecccc-CCccccccc-cCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 013235 321 ---TMAKGIG-NGIPLGAVV-TTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALK 395 (447)
Q Consensus 321 ---t~sK~lg-~G~pigav~-~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~ 395 (447)
+++|.++ +|+++|+++ .++++++.+... ..+|+.|+++++++.++|+. ++..++.++..+..++.|.+..
T Consensus 209 ~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l 283 (361)
T 3ftb_A 209 IIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAK--QNPWNINCFAEMAAINCLKD---TNYIEESLLWIKKERKRFIEEL 283 (361)
T ss_dssp EEEESSSTTSCGGGCCEEEEESCHHHHHHHHTT--SCTTCSCHHHHHHHHHTSSC---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeChhhcCCCCcceeEEEeCCHHHHHHHHhh--CCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHH
Confidence 6899998 799999998 899999988753 34788999999999998862 3444555555555555555555
Q ss_pred HhcCCee-eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 396 DKYGIIG-DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 396 ~~~~~i~-~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
++++.+. .+++.|.++++++... ...++.+.|+++||++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~l~~~gi~v~~ 325 (361)
T 3ftb_A 284 NKIGFIKRVFSPHANFVLCRLENI---------SGEKLYDSLLKEDIVIRR 325 (361)
T ss_dssp HHSSSEEEEECCSSSEEEEEESSS---------CHHHHHHHHHTTTEECEE
T ss_pred HhCCCCceecCCCCeEEEEEcCCC---------CHHHHHHHHHHCCeEEee
Confidence 5666666 7788899999888431 145788999999999875
No 52
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.96 E-value=3.5e-28 Score=245.34 Aligned_cols=313 Identities=12% Similarity=0.110 Sum_probs=229.5
Q ss_pred cCCCeEEEeecccEEEecCCCeEEEecCCcccccCCC-CCHHHHHHHHHHHHhcccccc-----cccchHHHHHHHHHHH
Q 013235 79 YSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGH-CHPYVVDSIVNQIKRIQHSTV-----LYLNHAIADFAEALAS 152 (447)
Q Consensus 79 ~~~p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~l~~~~~~~~-----~~~~~~~~elae~L~~ 152 (447)
++.|+.+.+++|+|+| .+|+.||||.+|.. +|| .+|.+.+++.++++...+... .+..+...++++.|++
T Consensus 24 ~~~~~~~~~~~g~~~~-~~g~~~idl~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~ 99 (398)
T 3a2b_A 24 YAYFRPIQSKQDTEVK-IDGRRVLMFGSNSY---LGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSA 99 (398)
T ss_dssp CCSSCCBCSCSSSEEE-ETTEEEEECSCSCT---TCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHH
T ss_pred ccceeeecCCCCceEE-ECCceEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHH
Confidence 4568889999999999 99999999998754 677 799999999999877532111 1235678899999999
Q ss_pred hCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCC
Q 013235 153 KMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF 232 (447)
Q Consensus 153 ~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~ 232 (447)
.++ .+++++++||++|++.+++.+. .+++.|++..++| +....++...+ ...+..|.
T Consensus 100 ~~g--~~~v~~~~ggt~a~~~~~~~~~--~~gd~V~~~~p~~-~~~~~~~~~~g------------~~~~~v~~------ 156 (398)
T 3a2b_A 100 YVG--KEAAILFSTGFQSNLGPLSCLM--GRNDYILLDERDH-ASIIDGSRLSF------------SKVIKYGH------ 156 (398)
T ss_dssp HHT--CSEEEEESSHHHHHHHHHHHSS--CTTCEEEEETTCC-HHHHHHHHHSS------------SEEEEECT------
T ss_pred HhC--CCcEEEECCHHHHHHHHHHHHh--CCCCEEEECCccC-HHHHHHHHHcC------------CceEEeCC------
Confidence 885 3689999999999999998663 2345566665554 44444443332 22222221
Q ss_pred CCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCc--cccCCCcccc
Q 013235 233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTGSHFWGF 310 (447)
Q Consensus 233 ~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGf--gr~G~~~~~~ 310 (447)
.| .++|++.+....++++++|+++++++++|.+.+ +++|.++|++||+++|+||+|..+ ++++ ..+ .
T Consensus 157 -~d----~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~-~~~-~ 225 (398)
T 3a2b_A 157 -NN----MEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKG-AGT-A 225 (398)
T ss_dssp -TC----HHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGG-CCH-H
T ss_pred -CC----HHHHHHHHHhhccCCceEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCC-Cch-H
Confidence 23 577888887532226789999999999998875 999999999999999999999643 4545 222 3
Q ss_pred cccCCC--CCEE--EeeccccC-CccccccccCHHHHHhhcCC--cccccCCCChHHHHHHHHHHHHHhh-hhHHHHHHH
Q 013235 311 EAHGVV--PDIV--TMAKGIGN-GIPLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAVLKVIQK-DKLQNNAHV 382 (447)
Q Consensus 311 ~~~gv~--pDiv--t~sK~lg~-G~pigav~~~~~i~~~l~~~--~~~~T~~~np~a~aaala~L~~i~~-~~l~~~~~~ 382 (447)
+.+++. +|++ +++|.++. | |++++++++++.+... .+..+...+++.++++.++|+.++. +++.+++++
T Consensus 226 ~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~ 302 (398)
T 3a2b_A 226 SHFGLNDDVDLIMGTFSKSLASLG---GFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWK 302 (398)
T ss_dssp HHHTCGGGCSEEEEESSSTTCSSC---EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHH
T ss_pred hhcCCCcCCeEEEecccccccCCC---cEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 445653 6888 79999983 5 8899999998887652 2455667778888788888887643 367788888
Q ss_pred HHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 383 VGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 383 ~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+.+++.+.|+++ .+.. +++.|.++++++. ......++.+.|+++||++.+
T Consensus 303 ~~~~l~~~L~~~--g~~~---~~~~g~~~~~~~~--------~~~~~~~l~~~l~~~gi~v~~ 352 (398)
T 3a2b_A 303 NTDYAKAQLLDH--GFDL---GATESPILPIFIR--------SNEKTFWVTKMLQDDGVFVNP 352 (398)
T ss_dssp HHHHHHHHHHHT--TCCB---CSCCSSEEEEECC--------CHHHHHHHHHHHHHTTEECEE
T ss_pred HHHHHHHHHHhc--CCCc---CCCCCCEEEEEcC--------CHHHHHHHHHHHHHCCcEEEe
Confidence 899999888876 3332 3456889888872 223356789999999999875
No 53
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.96 E-value=1.6e-29 Score=255.06 Aligned_cols=323 Identities=11% Similarity=0.004 Sum_probs=216.2
Q ss_pred EEEeecccEEEecCCC-------eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHh---
Q 013235 84 NVVDGKMQYLFDENGR-------RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASK--- 153 (447)
Q Consensus 84 ~~~~g~G~~l~d~dG~-------~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~--- 153 (447)
+..+|+|+++||.+|+ .+|||.++.. .++ .+|.|.+|+.++++... ..|... ..++++.|+++
T Consensus 9 ~~~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~---~~y~~~-~~~l~~~la~~l~~ 81 (399)
T 1c7n_A 9 ISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADM--EFK-NPPELIEGLKKYLDETV---LGYTGP-TEEYKKTVKKWMKD 81 (399)
T ss_dssp CCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSSC--SSC-CCHHHHHHHHHHHHHCC---CSSBCC-CHHHHHHHHHHHHH
T ss_pred ccccCCCccccccchhhccccCCCceeeeecCC--CCC-CCHHHHHHHHHHHhcCC---CCCCCC-cHHHHHHHHHHHHH
Confidence 3457999999998884 7899987763 466 68999999999987531 223332 44555555554
Q ss_pred -CC--CCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCC-cC
Q 013235 154 -MP--GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP-YR 229 (447)
Q Consensus 154 -~~--~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~-~~ 229 (447)
++ .+.++|++++||++|++.+++... .++++|++.+++||+....+... |...+..|.. ..
T Consensus 82 ~~g~~~~~~~v~~t~g~~~a~~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~~~~~~~~ 146 (399)
T 1c7n_A 82 RHQWDIQTDWIINTAGVVPAVFNAVREFT--KPGDGVIIITPVYYPFFMAIKNQ-------------ERKIIECELLEKD 146 (399)
T ss_dssp HHCCCCCGGGEEEESSHHHHHHHHHHHHC--CTTCEEEECSSCCTHHHHHHHTT-------------TCEEEECCCEEET
T ss_pred HhCCCCChhhEEEcCCHHHHHHHHHHHhc--CCCCEEEEcCCCcHhHHHHHHHc-------------CCEEEecccccCC
Confidence 33 446789999999999999998653 24578999999999977655432 2222222221 11
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccc
Q 013235 230 GVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309 (447)
Q Consensus 230 ~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~ 309 (447)
+.|..| .++|++.+.. .++++|++...++++|.+. |++++++|.++|++||+++|+||+|++|+++|.....
T Consensus 147 g~~~~d----~~~l~~~l~~---~~~~~v~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~ 218 (399)
T 1c7n_A 147 GYYTID----FQKLEKLSKD---KNNKALLFCSPHNPVGRVW-KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTV 218 (399)
T ss_dssp TEEECC----HHHHHHHHTC---TTEEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCC
T ss_pred CCEEEc----HHHHHHHhcc---CCCcEEEEcCCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCccc
Confidence 122234 6778877752 2567777766678888765 6789999999999999999999999999887732333
Q ss_pred cccc-----CCCCCEEEeecccc-CCccccccccC-HHHHHhhcCCcccccC-CCChHHHHHHHHHHHHHhhhhHHHHHH
Q 013235 310 FEAH-----GVVPDIVTMAKGIG-NGIPLGAVVTT-PEIAEVLTRRNYFNTF-GGNPVCTAAGHAVLKVIQKDKLQNNAH 381 (447)
Q Consensus 310 ~~~~-----gv~pDivt~sK~lg-~G~pigav~~~-~~i~~~l~~~~~~~T~-~~np~a~aaala~L~~i~~~~l~~~~~ 381 (447)
+..+ +...++.+++|.++ +|+|+|+++++ +++++.+.......++ +.|+++++++.++|+.. ++..++.+
T Consensus 219 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~ 296 (399)
T 1c7n_A 219 FQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKEC--GKWLDGCI 296 (399)
T ss_dssp GGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC--HHHHHHHH
T ss_pred HHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC--hHHHHHHH
Confidence 3222 22334457899999 89999999997 6788877654334444 57999999999998743 23344444
Q ss_pred HHHHHHHHHHHHHHHh-cCCeeeEeeccee-EEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235 382 VVGSYLKERLTALKDK-YGIIGDVRGRGFL-LGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS 445 (447)
Q Consensus 382 ~~g~~l~~~L~~l~~~-~~~i~~vrg~Gl~-~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~ 445 (447)
+..+..++.|.+..++ ++.+..+++.|.+ +++++.... ....++.+.|+ ++||++.+
T Consensus 297 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~ 356 (399)
T 1c7n_A 297 KVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALK-------MDHKAMEEFMIHKAQIFFDE 356 (399)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGC-------CCHHHHHHHHHHTTCCCCEE
T ss_pred HHHHHHHHHHHHHHHhhCCCCeEecCCceEEEEEEcccCC-------CCHHHHHHHHHHhCCEEEeC
Confidence 3334444444443333 4334445565554 467774210 01356888897 68999874
No 54
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.96 E-value=1.1e-28 Score=251.56 Aligned_cols=321 Identities=12% Similarity=0.041 Sum_probs=213.3
Q ss_pred eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccch-HHHHHHHHHHHhC----C--CCCc-eEEEcCCHHHHH
Q 013235 100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKM----P--GNLK-VVFFTNSGTEAN 171 (447)
Q Consensus 100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~-~~~elae~L~~~~----~--~~~~-~v~~~~sGseA~ 171 (447)
.+|||.+|.. .+| .+|.|.+|+.++++...+....|... ...+++++|++++ + .+.+ +|+|++||++|+
T Consensus 38 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~ 114 (429)
T 1yiz_A 38 KPLNLGQGFP--DYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEAL 114 (429)
T ss_dssp CCEECCSSSC--SSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred CEEEecCCCC--CCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHH
Confidence 5899988876 567 78999999999987632211223221 2344555555443 3 3456 899999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCC------cCCCCCCChHHHHHHHHH
Q 013235 172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP------YRGVFGADGEMYAKDVQD 245 (447)
Q Consensus 172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~------~~~~~~~d~~~~~~~le~ 245 (447)
+.+++.+. .++++|++.+++||+....+... +. .+..++.... ....|+.| .++|++
T Consensus 115 ~~~~~~~~--~~gd~Vl~~~p~y~~~~~~~~~~-g~----------~~~~~~~~~~~~~~~~~~~~~~~d----~~~l~~ 177 (429)
T 1yiz_A 115 YATIQGHV--DEGDEVIIIEPFFDCYEPMVKAA-GG----------IPRFIPLKPNKTGGTISSADWVLD----NNELEA 177 (429)
T ss_dssp HHHHHHHC--CTTCEEEEEESCCTTHHHHHHHT-TC----------EEEEEECBCCCSSSSEEGGGCBCC----HHHHHH
T ss_pred HHHHHHhc--CCCCEEEEcCCCchhHHHHHHHc-CC----------EEEEEeCCcccccccccccCcccC----HHHHHH
Confidence 99999764 24578999999999976654322 11 1122221110 00023344 567777
Q ss_pred HHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccc----ccCCCCCEEE
Q 013235 246 LIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE----AHGVVPDIVT 321 (447)
Q Consensus 246 ~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~----~~gv~pDivt 321 (447)
.+. +++++|++++.++++|.+. |++++++|.++|++||+++|+||+|++|+++|.....+. .++..+++.+
T Consensus 178 ~l~----~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s 252 (429)
T 1yiz_A 178 LFN----EKTKMIIINTPHNPLGKVM-DRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGS 252 (429)
T ss_dssp HCC----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEE
T ss_pred Hhc----cCceEEEECCCCCCCCccC-CHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEec
Confidence 663 3678888888889999775 678999999999999999999999999988773222222 3445566778
Q ss_pred eecccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHH-----HhhhhHHHHHHHHHHHHHHHHHHHH
Q 013235 322 MAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV-----IQKDKLQNNAHVVGSYLKERLTALK 395 (447)
Q Consensus 322 ~sK~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~-----i~~~~l~~~~~~~g~~l~~~L~~l~ 395 (447)
++|.++ +|+|+|++++++++++.+....+..+|+.|+++++++.++|+. .+.+++.+++++..+..++.|.+..
T Consensus 253 ~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 332 (429)
T 1yiz_A 253 AGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFL 332 (429)
T ss_dssp HHHHHTCGGGCCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred chhccCCCCcceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 7999999999999998887555567899999999999999987 4224444444444444444444333
Q ss_pred HhcCCeeeEeecceeEEEEEeeCCCCC----CCCHHHHHHHHHHHH-hCCceeec
Q 013235 396 DKYGIIGDVRGRGFLLGVEFVTDRQLK----TPAKAETLYIMDKMK-GICALFFS 445 (447)
Q Consensus 396 ~~~~~i~~vrg~Gl~~giel~~~~~~~----~p~~~~~~~~~~~l~-~~Gvlv~~ 445 (447)
+++++....+..|+++++++....... .+......++++.|+ ++||++.+
T Consensus 333 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~ 387 (429)
T 1yiz_A 333 AEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIP 387 (429)
T ss_dssp HHHTCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBC
T ss_pred HhCCCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeC
Confidence 333433223345889999885321000 000012456888886 78999864
No 55
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.96 E-value=9.4e-29 Score=246.74 Aligned_cols=302 Identities=14% Similarity=0.090 Sum_probs=208.2
Q ss_pred EecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHH
Q 013235 94 FDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANEL 173 (447)
Q Consensus 94 ~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~ 173 (447)
++.+|+++|||.+|.. ++| .+|++.+|+.++++.. ..|+.+...+++++|+++++.+.++|+|++||++|++.
T Consensus 19 ~~~~~~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~ 91 (364)
T 1lc5_A 19 LGISPDQLLDFSANIN--PLG-MPVSVKRALIDNLDCI----ERYPDADYFHLHQALARHHQVPASWILAGNGETESIFT 91 (364)
T ss_dssp HTSCGGGSEECSSCCC--TTC-CCHHHHHHHHHTGGGG----GSCCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHH
T ss_pred cCCCccceEEeccccC--CCC-CCHHHHHHHHHHHHHh----hcCCCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHH
Confidence 3567889999998874 577 7899999999988653 23444556789999999987666789999999999999
Q ss_pred HHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 013235 174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG 253 (447)
Q Consensus 174 Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~ 253 (447)
+++.+ ++ ++|++.+++||+....+...+. .+..++.. ....+.. ++++++...+
T Consensus 92 ~~~~~---~g-d~vl~~~p~y~~~~~~~~~~g~-----------~~~~v~~~--~~~~~~~--------l~~~~~~~~~- 145 (364)
T 1lc5_A 92 VASGL---KP-RRAMIVTPGFAEYGRALAQSGC-----------EIRRWSLR--EADGWQL--------TDAILEALTP- 145 (364)
T ss_dssp HHHHH---CC-SEEEEEESCCTHHHHHHHHTTC-----------EEEEEECC--GGGTTCC--------CTTHHHHCCT-
T ss_pred HHHHc---CC-CeEEEeCCCcHHHHHHHHHcCC-----------eEEEEeCC--cccccch--------hHHHHHhccC-
Confidence 99977 34 8899999999997765543321 12222221 1001110 1122222222
Q ss_pred CeE-EEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cccCCCCCEEEeecccc-CCc
Q 013235 254 HVA-GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVVPDIVTMAKGIG-NGI 330 (447)
Q Consensus 254 ~~a-avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~~gv~pDivt~sK~lg-~G~ 330 (447)
+++ .++.+| ++++|.+. +.+++++|.++|++||+++|+||+|++|++.|..+... +.++....+.+++|.++ +|+
T Consensus 146 ~~~~v~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 223 (364)
T 1lc5_A 146 DLDCLFLCTP-NNPTGLLP-ERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGL 223 (364)
T ss_dssp TCCEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTT
T ss_pred CCCEEEEeCC-CCCCCCCC-CHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCcc
Confidence 334 445567 66677664 77899999999999999999999999987655222221 22333334557999998 799
Q ss_pred cccccc-cCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecce
Q 013235 331 PLGAVV-TTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGF 409 (447)
Q Consensus 331 pigav~-~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl 409 (447)
|+|+++ +++++++.+... ..+|+.|+++++++.++|+. .+..++.++..+..++.|.+..++++.+..+++.|.
T Consensus 224 r~G~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~ 298 (364)
T 1lc5_A 224 RLGYLVNSDDAAMARMRRQ--QMPWSVNALAALAGEVALQD---SAWQQATWHWLREEGARFYQALCQLPLLTVYPGRAN 298 (364)
T ss_dssp CCEEEECCCHHHHHHHHHH--SCTTCSCHHHHHHHHHGGGC---HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSSS
T ss_pred ceEEEEECCHHHHHHHHHh--CCCCCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCCCe
Confidence 999999 999998877642 25788999999998888863 234444444444444455444444544555577889
Q ss_pred eEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 410 LLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 410 ~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
++++++.++ ..++.+.|+++||++.+
T Consensus 299 ~~~~~~~~~----------~~~l~~~l~~~gi~v~~ 324 (364)
T 1lc5_A 299 YLLLRCERE----------DIDLQRRLLTQRILIRS 324 (364)
T ss_dssp EEEEEESCT----------TCCHHHHHHTTTEECEE
T ss_pred EEEEECCCc----------HHHHHHHHHHCCcEEee
Confidence 988887421 23578889999999875
No 56
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.93 E-value=3.7e-31 Score=267.03 Aligned_cols=324 Identities=12% Similarity=0.053 Sum_probs=220.1
Q ss_pred eEEEeecccEEEecCCC--eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhC----C-
Q 013235 83 LNVVDGKMQYLFDENGR--RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKM----P- 155 (447)
Q Consensus 83 ~~~~~g~G~~l~d~dG~--~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~----~- 155 (447)
++..+|+|+++||.+|+ .+|||..|.. .++ .+|++.+|+.++++... ..|... ..++.+.|++++ +
T Consensus 13 ~~~~~~~g~~~~d~~g~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~---~~y~~~-~~~l~~~la~~l~~~~g~ 85 (392)
T 3b1d_A 13 APNRLSHHTYKWKETETDPQLLPAWIADM--DFE-VMPEVKQAIHDYAEQLV---YGYTYA-SDELLQAVLDWEKSEHQY 85 (392)
Confidence 45677999999999999 9999988765 556 68999999999886531 223333 555666666543 2
Q ss_pred -CCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCC-cCCCCC
Q 013235 156 -GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP-YRGVFG 233 (447)
Q Consensus 156 -~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~-~~~~~~ 233 (447)
.+.++|++++||++|++.+++.+. .++++|++..++||+....+...+ ...+..|.. ..+.|.
T Consensus 86 ~~~~~~v~~~~g~~~a~~~~~~~~~--~~gd~vl~~~p~~~~~~~~~~~~g-------------~~~~~~~~~~~~g~~~ 150 (392)
T 3b1d_A 86 SFDKEDIVFVEGVVPAISIAIQAFT--KEGEAVLINSPVYPPFARSVRLNN-------------RKLVSNSLKEENGLFQ 150 (392)
Confidence 345789999999999999998764 256789999999999876543321 111111110 001122
Q ss_pred CChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC---Ccccc
Q 013235 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS---HFWGF 310 (447)
Q Consensus 234 ~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~---~~~~~ 310 (447)
.| .+++++.+.. .++++++++..++++|.+. +++++++|.++|++||+++|+||+|++|+++|. .++++
T Consensus 151 ~d----~~~l~~~l~~---~~~~~v~~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 222 (392)
T 3b1d_A 151 ID----FEQLENDIVE---NDVKLYLLCNPHNPGGRVW-EREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTV 222 (392)
Confidence 23 4566666642 2456777776778888764 678999999999999999999999999988763 23333
Q ss_pred cc--cCCCCCEEEeecccc-CCccccccccCH-HHHHhhcCCcccccC-CCChHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 013235 311 EA--HGVVPDIVTMAKGIG-NGIPLGAVVTTP-EIAEVLTRRNYFNTF-GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGS 385 (447)
Q Consensus 311 ~~--~gv~pDivt~sK~lg-~G~pigav~~~~-~i~~~l~~~~~~~T~-~~np~a~aaala~L~~i~~~~l~~~~~~~g~ 385 (447)
.. .+..+++.++||.++ +|+|+|++++++ ++++.+.......++ +.|+++++++.++|+.. +++.+++++..+
T Consensus 223 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~ 300 (392)
T 3b1d_A 223 SPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG--KPWLVALKAVLE 300 (392)
Confidence 22 455677889999998 899999999875 588877765444444 46899999999998732 334444444444
Q ss_pred HHHHHHHHHHHh-cCCeeeEeecceeEE-EEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235 386 YLKERLTALKDK-YGIIGDVRGRGFLLG-VEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS 445 (447)
Q Consensus 386 ~l~~~L~~l~~~-~~~i~~vrg~Gl~~g-iel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~ 445 (447)
..++.|.+..++ ++.+..+++.|.|+. +++.... ....++.+.|+ ++||++.+
T Consensus 301 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~l~~~l~~~~gi~v~~ 356 (392)
T 3b1d_A 301 ENIQFAVEYFAQEAPRLKVMKPQGTYLIWLDFSDYG-------LTDDALFTLLHDQAKVILNR 356 (392)
Confidence 444545444433 334445666666654 7774210 12346888886 78999864
No 57
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.96 E-value=4.1e-28 Score=245.41 Aligned_cols=314 Identities=13% Similarity=0.048 Sum_probs=215.2
Q ss_pred CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhC----C--CCCceEEEcCCHHH
Q 013235 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P--GNLKVVFFTNSGTE 169 (447)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~----~--~~~~~v~~~~sGse 169 (447)
.|+.+|||.+|... ..||++|.+.+|+.++++...+... |.. ....++.++|++++ + ...++|++++||++
T Consensus 32 ~g~~~idl~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~ 109 (407)
T 2zc0_A 32 KGVKLISLAAGDPD-PELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTG 109 (407)
T ss_dssp SSCCCEECCSCCCC-TTTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHH
T ss_pred CCCceEeCCCCCCC-chhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHH
Confidence 37789999988864 3488999999999999987532222 332 23455666666554 4 34678999999999
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235 170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF 249 (447)
Q Consensus 170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~ 249 (447)
|++.+++.+.. ++++|++.+++||+........ +. .+..++.. .. +.| .++|++.+..
T Consensus 110 a~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~-g~----------~~~~v~~~--~~---~~d----~~~l~~~l~~ 167 (407)
T 2zc0_A 110 ALDLLGRVLID--PGDVVITENPSYINTLLAFEQL-GA----------KIEGVPVD--ND---GMR----VDLLEEKIKE 167 (407)
T ss_dssp HHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHTT-TC----------EEEEEEEE--TT---EEC----HHHHHHHHHH
T ss_pred HHHHHHHHhcC--CCCEEEEeCCChHHHHHHHHHc-CC----------EEEEcccC--CC---CCC----HHHHHHHHHh
Confidence 99999997742 4678999999999865543221 11 12222211 11 123 5677777751
Q ss_pred c--CCCCeEEEE-EccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccC---CCCCEEEee
Q 013235 250 G--TSGHVAGFL-SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG---VVPDIVTMA 323 (447)
Q Consensus 250 ~--~~~~~aavi-~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~g---v~pDivt~s 323 (447)
. ...++++|+ ++..++++|.+. |.+++++|.++|++||+++|+||+|++|.+.|.....+..++ ...++.+++
T Consensus 168 ~~~~~~~~~~v~~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 246 (407)
T 2zc0_A 168 LKAKGQKVKLIYTIPTGQNPMGVTM-SMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLS 246 (407)
T ss_dssp HHHTTCCEEEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEEST
T ss_pred hhcccCCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccc
Confidence 1 112567764 555778888865 688999999999999999999999999987773233333333 233556799
Q ss_pred ccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHH--h---hhhHHHHHHHHHHHHHHHHHHHHHhc
Q 013235 324 KGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI--Q---KDKLQNNAHVVGSYLKERLTALKDKY 398 (447)
Q Consensus 324 K~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i--~---~~~l~~~~~~~g~~l~~~L~~l~~~~ 398 (447)
|.+++|+|+|++++++++++.+.......+++.|+++++++.++|+.. + -++..++.+++.+++.+.|++.....
T Consensus 247 K~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 326 (407)
T 2zc0_A 247 KVLGTGFRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNA 326 (407)
T ss_dssp TTTCTTSCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred cccCCCcceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999988876545567888999999999998754 1 12355566667777777766532112
Q ss_pred CCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235 399 GIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS 445 (447)
Q Consensus 399 ~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~ 445 (447)
..+ .+..|+++++++.+.. ...++.+.|+++ ||++.+
T Consensus 327 ~~~--~~~~~~~~~~~~~~~~--------~~~~l~~~l~~~~gi~v~~ 364 (407)
T 2zc0_A 327 EFT--KPIAGMFVMFFLPEGA--------DGISFANELMEREGVVVVP 364 (407)
T ss_dssp CBC--CCSBSSEEEEECSTTC--------CHHHHHHHHHHHTCEECBC
T ss_pred EEe--cCCCcEEEEEEcCCCC--------CHHHHHHHHHHhCCeEEEC
Confidence 111 2456788888873210 145788899988 999864
No 58
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.96 E-value=1.4e-27 Score=236.83 Aligned_cols=307 Identities=14% Similarity=0.048 Sum_probs=218.7
Q ss_pred ecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCH
Q 013235 88 GKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSG 167 (447)
Q Consensus 88 g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sG 167 (447)
.+|.++++.+|+++|||.+|.. +++ .+|+|.+|+.++++.. ..|+++...+++++|+++++.+.+++++++||
T Consensus 5 ~~~~~~~~~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~ 77 (354)
T 3ly1_A 5 PESAAFTAPSTDNPIRINFNEN--PLG-MSPKAQAAARDAVVKA----NRYAKNEILMLGNKLAAHHQVEAPSILLTAGS 77 (354)
T ss_dssp ----CCCCCCSSSCEECSSCCC--SSC-CCHHHHHHHHHTGGGT----TSCCHHHHHHHHHHHHHHTTSCGGGEEEESHH
T ss_pred cccccccCCCCCceEEccCCCC--CCC-CCHHHHHHHHHHHhhC----cCCCCCchHHHHHHHHHHhCCChHHEEEeCCh
Confidence 3567788999999999999875 555 7899999999988753 34667788899999999997667889999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235 168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247 (447)
Q Consensus 168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i 247 (447)
++|++.+++... .+++.|++..++|++....+... |...+..|... .++.| .++|++.+
T Consensus 78 ~~a~~~~~~~l~--~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~--~~~~d----~~~l~~~l 136 (354)
T 3ly1_A 78 SEGIRAAIEAYA--SLEAQLVIPELTYGDGEHFAKIA-------------GMKVTKVKMLD--NWAFD----IEGLKAAV 136 (354)
T ss_dssp HHHHHHHHHHHC--CTTCEEEEESSSCTHHHHHHHHT-------------TCEEEEECCCT--TSCCC----HHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCeEEECCCCchHHHHHHHHc-------------CCEEEEecCCC--CCCCC----HHHHHHHh
Confidence 999999998653 35678999999999876544332 22222222211 13345 67788877
Q ss_pred HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccc-c---ccc-CCCCCEEEe
Q 013235 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-F---EAH-GVVPDIVTM 322 (447)
Q Consensus 248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~-~---~~~-gv~pDivt~ 322 (447)
.+. .++.+|+++..++++|.+. +.+.+++|.++| +||+++|+||+|++|.+.|. ... . +.+ +....+.++
T Consensus 137 ~~~--~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~ 211 (354)
T 3ly1_A 137 AAY--SGPSIVYLVNPNNPTGTIT-PADVIEPWIASK-PANTMFIVDEAYAEFVNDPR-FRSISPMITQGAENIILLKTF 211 (354)
T ss_dssp HTC--SSCEEEEEESSCTTTCCCC-CHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTT-CCCSHHHHHTTCSSEEEEEES
T ss_pred ccC--CCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhC-CCCeEEEEeccHHHhccccc-cCCHHHHhhhcCCCEEEEeeC
Confidence 631 2567777777788888776 555677777777 69999999999999987763 221 1 222 333445578
Q ss_pred ecccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013235 323 AKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ-KDKLQNNAHVVGSYLKERLTALKDKYGI 400 (447)
Q Consensus 323 sK~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~-~~~l~~~~~~~g~~l~~~L~~l~~~~~~ 400 (447)
+|.+| +|+++|++++++++++.+.... ..++.|+++++++.++|+..+ -++..++.+++.+++.+.|+++ +
T Consensus 212 sK~~g~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~- 284 (354)
T 3ly1_A 212 SKIHAMAGMRVGYAVAHPTVIALMGRYV--AGEKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL----K- 284 (354)
T ss_dssp SSTTCCGGGCCEEEECCHHHHHHHGGGT--TCSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH----T-
T ss_pred hhhccChhhhheeeecCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----C-
Confidence 99998 8999999999999999887543 337889999999999886321 1233445555555566555554 2
Q ss_pred eeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235 401 IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF 444 (447)
Q Consensus 401 i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~ 444 (447)
+..+++.|.++++++.. ...++.+.|+++||++.
T Consensus 285 ~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~v~ 318 (354)
T 3ly1_A 285 LPYLPSEGNFVFHQLVV----------PLKDYQTHMADAGVLIG 318 (354)
T ss_dssp CCBCCCCSSEEEEECSS----------CHHHHHHHHHHTTEECC
T ss_pred CeECCCCceEEEEECCC----------CHHHHHHHHHHCCEEEe
Confidence 33346788998888742 14578889999999986
No 59
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.95 E-value=3.1e-28 Score=245.99 Aligned_cols=329 Identities=11% Similarity=0.011 Sum_probs=214.8
Q ss_pred EEEeecccEEEecCCC---eEEEecCCcccccCCCCCHHHHHHHHHHHHhcc---cccccccchHHHHHHHHHHHhCCCC
Q 013235 84 NVVDGKMQYLFDENGR---RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---HSTVLYLNHAIADFAEALASKMPGN 157 (447)
Q Consensus 84 ~~~~g~G~~l~d~dG~---~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~---~~~~~~~~~~~~elae~L~~~~~~~ 157 (447)
++..++|.++++.+++ ++|||.+|... +++ .+|+|.+|+.++++... +....+..+...++++.|++.++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~id~~~g~~~-~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~ 98 (407)
T 3nra_A 21 VRQSAAGLEALIRGAPIEGRPVDFSHGDVD-AHE-PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAP 98 (407)
T ss_dssp ------CCTTTCCSCCCCSCCEETTSCCTT-TSC-CCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHhhhhHHHhhcCCCCCceeeecCcCCC-CCC-CcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 3556677776555544 59999987653 455 78999999999987532 2222334567778888888876543
Q ss_pred --C-ceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCC-CC-cCCCC
Q 013235 158 --L-KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNP-DP-YRGVF 232 (447)
Q Consensus 158 --~-~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p-~~-~~~~~ 232 (447)
. ++++|++||++|++.+++.. ..+++.|++.+++|++....+..... .+..++.. .. ....+
T Consensus 99 ~~~~~~i~~~~g~~~a~~~~~~~l--~~~gd~vl~~~~~~~~~~~~~~~~g~-----------~~~~~~~~~~~~~~~~~ 165 (407)
T 3nra_A 99 VDARDGLIITPGTQGALFLAVAAT--VARGDKVAIVQPDYFANRKLVEFFEG-----------EMVPVQLDYVSADETRA 165 (407)
T ss_dssp CCTTTSEEEESHHHHHHHHHHHTT--CCTTCEEEEEESCCTHHHHHHHHTTC-----------EEEEEEBCCCSSCCSSC
T ss_pred CCCCCcEEEeCCcHHHHHHHHHHh--CCCCCEEEEcCCcccchHHHHHHcCC-----------EEEEeecccccccCcCC
Confidence 2 68999999999999999865 23568899999999976654433211 12222210 00 01223
Q ss_pred CCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccc
Q 013235 233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA 312 (447)
Q Consensus 233 ~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~ 312 (447)
+.| .++|++.+.. ++.+|+++..++++|.+. +++.+++|.++|++||+++|+||+|++|+++|..+..+..
T Consensus 166 ~~d----~~~l~~~l~~----~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~ 236 (407)
T 3nra_A 166 GLD----LTGLEEAFKA----GARVFLFSNPNNPAGVVY-SAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRA 236 (407)
T ss_dssp CBC----HHHHHHHHHT----TCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGG
T ss_pred CcC----HHHHHHHHhh----CCcEEEEcCCCCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhh
Confidence 334 6778777764 333444444477888765 7888999999999999999999999999888743333333
Q ss_pred cC-----CCCCEEEeecccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 013235 313 HG-----VVPDIVTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSY 386 (447)
Q Consensus 313 ~g-----v~pDivt~sK~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~ 386 (447)
.+ ...++.+++|.++ +|+|+|++++++++++.+.......+++.++++++++.++|+. .++..++..+..+.
T Consensus 237 ~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~ 314 (407)
T 3nra_A 237 EAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDE--APGWMEDRIARHQA 314 (407)
T ss_dssp CTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCC--CTTHHHHHHHHHHH
T ss_pred cCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhc--cchHHHHHHHHHHH
Confidence 32 2334557899999 7999999999999999887655667788889988888777752 22333333333444
Q ss_pred HHHHHHHHHHhcCCeeeEeec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh-CCceeec
Q 013235 387 LKERLTALKDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKG-ICALFFS 445 (447)
Q Consensus 387 l~~~L~~l~~~~~~i~~vrg~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~ 445 (447)
+++.|.+..++++.+..++.. |+++++++.... ....++.+.|++ +||++.+
T Consensus 315 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~ 368 (407)
T 3nra_A 315 IRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLA-------VAPAEFVKILRLQAGVVVTP 368 (407)
T ss_dssp HHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCBS-------SCHHHHHHHHHHHHCEECEE
T ss_pred HHHHHHHHHhcCCCceeccCCeeEEEEEeCCCCC-------CCHHHHHHHHHHhCCEEEeC
Confidence 444444444444434433444 578777764311 114568888876 5999864
No 60
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.95 E-value=1.5e-27 Score=240.11 Aligned_cols=307 Identities=14% Similarity=0.086 Sum_probs=202.4
Q ss_pred cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccch-HHHHHHHHHHHhC----C--CCCceEEEcCCHH
Q 013235 96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKM----P--GNLKVVFFTNSGT 168 (447)
Q Consensus 96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~-~~~elae~L~~~~----~--~~~~~v~~~~sGs 168 (447)
.+|+++|||.+|... ++ .+|+|.+|+.++++... ..|... ...+++++|++++ + .+.++|+|++||+
T Consensus 28 ~~g~~~i~l~~g~~~--~~-~~~~v~~a~~~~~~~~~---~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~ 101 (391)
T 3h14_A 28 EAGRRIIHMEVGQPG--TG-APRGAVEALAKSLETDA---LGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSS 101 (391)
T ss_dssp HTTCCCEECCCSSCS--SC-SCHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHH
T ss_pred hcCCCeEEccCCCCC--CC-CCHHHHHHHHHHHhcCC---CCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChH
Confidence 478999999998864 45 37999999999886531 122222 1345555555543 2 4567899999999
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235 169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID 248 (447)
Q Consensus 169 eA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~ 248 (447)
+|++.+++... ..++.|++..++|++........ |...+..|....+.|..| .+++++.
T Consensus 102 ~al~~~~~~l~--~~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~-- 160 (391)
T 3h14_A 102 GGFLLAFTALF--DSGDRVGIGAPGYPSYRQILRAL-------------GLVPVDLPTAPENRLQPV----PADFAGL-- 160 (391)
T ss_dssp HHHHHHHHHHC--CTTCEEEEEESCCHHHHHHHHHT-------------TCEEEEEECCGGGTTSCC----HHHHTTS--
T ss_pred HHHHHHHHHhc--CCCCEEEEcCCCCccHHHHHHHc-------------CCEEEEeecCcccCCCCC----HHHHHhc--
Confidence 99999998664 25688999999999876544332 222222222212223334 4445432
Q ss_pred ccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeecccc-
Q 013235 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG- 327 (447)
Q Consensus 249 ~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg- 327 (447)
++.+|+++..++++|.+. +.+.+++|.++|++||+++|+||+|++|.++|......+..+....+.+++|.+|
T Consensus 161 -----~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 234 (391)
T 3h14_A 161 -----DLAGLMVASPANPTGTML-DHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSM 234 (391)
T ss_dssp -----CCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCC
T ss_pred -----CCeEEEECCCCCCCCccC-CHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCC
Confidence 445667767778888876 6777999999999999999999999999887732222232222223337899998
Q ss_pred CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeec
Q 013235 328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR 407 (447)
Q Consensus 328 ~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~ 407 (447)
+|+|+|++++++++++.+.......+++.|+++++++.++|+ .++..++.++..+..++.|.+..++++....+++.
T Consensus 235 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 311 (391)
T 3h14_A 235 TGWRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALD---CDAELQANLDVYKANRKLMLERLPKAGFTRIAPPD 311 (391)
T ss_dssp TTSCCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCC
T ss_pred ccceeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC
Confidence 899999999999999888765566788899999999988886 33344444444444444444444444544333444
Q ss_pred -ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235 408 -GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS 445 (447)
Q Consensus 408 -Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~ 445 (447)
|+++++++.... ....++.+.|+++ ||++.+
T Consensus 312 ~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~ 344 (391)
T 3h14_A 312 GAFYVYADVSDLT-------DDSRAFAAEILEKAGVAVTP 344 (391)
T ss_dssp BTTEEEEECTTTC-------SCHHHHHHHHHHHHCEECEE
T ss_pred eeEEEEEecCccC-------CCHHHHHHHHHHHCCEEEcC
Confidence 477777773211 0145688888876 999864
No 61
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.95 E-value=9.3e-28 Score=240.44 Aligned_cols=306 Identities=13% Similarity=0.019 Sum_probs=207.9
Q ss_pred cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhC----CCC--Cc-eEEEcCCH
Q 013235 96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----PGN--LK-VVFFTNSG 167 (447)
Q Consensus 96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~----~~~--~~-~v~~~~sG 167 (447)
.+|+++|||.+|.. .+| .+|.|.+|+.++++.. ....|.. ....+++++|++++ +.+ .+ +|+|++||
T Consensus 22 ~~g~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~--~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~ 96 (376)
T 2dou_A 22 ERGVGLIDLSIGST--DLP-PPEAPLKALAEALNDP--TTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGS 96 (376)
T ss_dssp HTTCCCEECSSCCC--CCC-CCHHHHHHHHHHTTCG--GGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSH
T ss_pred ccCCCEEeccCCCC--CCC-CCHHHHHHHHHHHhCC--CcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCc
Confidence 46889999999876 567 5899999999988652 1223444 35677888888765 433 24 79999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235 168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247 (447)
Q Consensus 168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i 247 (447)
++|++.+++... .++++|++.+++||+....+...+. .+..++.+ ..|..| .+++++.+
T Consensus 97 ~~a~~~~~~~l~--~~gd~vl~~~p~y~~~~~~~~~~g~-----------~~~~~~~~----~~~~~d----~~~l~~~l 155 (376)
T 2dou_A 97 QEGLAHLLLALT--EPEDLLLLPEVAYPSYFGAARVASL-----------RTFLIPLR----EDGLAD----LKAVPEGV 155 (376)
T ss_dssp HHHHHHHHHHHC--CTTCEEEEESSCCHHHHHHHHHTTC-----------EEEEECBC----TTSSBC----GGGSCHHH
T ss_pred HHHHHHHHHHhc--CCCCEEEECCCCcHhHHHHHHHcCC-----------EEEEeeCC----CCCCCC----HHHHHHhh
Confidence 999999998663 2457899999999997765543211 12222221 122234 34555555
Q ss_pred HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccc-ccc---cCCCCCEEEee
Q 013235 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEA---HGVVPDIVTMA 323 (447)
Q Consensus 248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~-~~~---~gv~pDivt~s 323 (447)
.. ++++++++..++++|.+. +.+++++|.++|++||+++|+||+|++|.+.| .... .+. .+...++.+++
T Consensus 156 ~~----~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~s 229 (376)
T 2dou_A 156 WR----EAKVLLLNYPNNPTGAVA-DWGYFEEALGLARKHGLWLIHDNPYVDQVYEG-EAPSPLALPGAKERVVELFSLS 229 (376)
T ss_dssp HH----HEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSS-CCCCGGGSTTGGGTEEEEEEHH
T ss_pred cc----CceEEEECCCCCCcCccC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCcEEEEecch
Confidence 42 567777765577788765 67899999999999999999999999998776 2221 222 23334455899
Q ss_pred cccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 013235 324 KGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG 402 (447)
Q Consensus 324 K~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~ 402 (447)
|.+| +|+|+|++++++++++.+.......+++.|+++++++.++|+.. ++..++.++..+..++.|.+..+++ +.
T Consensus 230 K~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~--~~ 305 (376)
T 2dou_A 230 KSYNLAGFRLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTP--KEVVRGYARVYRERALGMAEALKGV--LS 305 (376)
T ss_dssp HHHTCGGGCCEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHHHTTT--SE
T ss_pred hhcCChhheeEEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHh--cC
Confidence 9998 79999999999999988875445567788999999998888642 2333333333333344443333333 22
Q ss_pred eEee-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 403 DVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 403 ~vrg-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
.+++ .|+++++++.+.. ...++.+.|+++||++.+
T Consensus 306 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~gi~v~~ 341 (376)
T 2dou_A 306 LLPPRATMYLWGRLPEGV--------DDLEFGLRLVERGVALAP 341 (376)
T ss_dssp ECCCCBSSEEEEECCTTC--------CHHHHHHHHHHTTEECEE
T ss_pred ccCCCeeEEEEEECCCCC--------CHHHHHHHHHHCCEEEcC
Confidence 2333 4677888874210 135688999999999864
No 62
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.95 E-value=5.3e-27 Score=233.97 Aligned_cols=301 Identities=13% Similarity=0.045 Sum_probs=217.6
Q ss_pred CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCC-CCceEEEcCCHHHHHHHHHH
Q 013235 98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIM 176 (447)
Q Consensus 98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~-~~~~v~~~~sGseA~e~Aik 176 (447)
.+.+|||.+|.. +++ .+|+|.+|+.+++.... ...|+++...+++++|+++++. ..++++|++||++|++.+++
T Consensus 29 ~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~--~~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~ 103 (367)
T 3euc_A 29 SHGLVKLDAMEN--PYR-LPPALRSELAARLGEVA--LNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLAL 103 (367)
T ss_dssp CTTCEECCSSCC--CCC-CCHHHHHHHHHHHHHHH--TTCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHH
T ss_pred CCCeeEccCCCC--CCC-CCHHHHHHHHHHhhhhh--hhcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHH
Confidence 467999998874 455 78999999999987531 2345556678999999999865 55789999999999999998
Q ss_pred HHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeE
Q 013235 177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA 256 (447)
Q Consensus 177 ~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a 256 (447)
... ..+++|++.+++|++....+...+. .+..++... .+..| .+++++.+... +++
T Consensus 104 ~~~--~~gd~Vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~~----~~~~d----~~~l~~~l~~~---~~~ 159 (367)
T 3euc_A 104 AAA--RPGAKVMAPVPGFVMYAMSAQFAGL-----------EFVGVPLRA----DFTLD----RGAMLAAMAEH---QPA 159 (367)
T ss_dssp HTC--CTTCEEEEEESCSCCSCHHHHTTTC-----------EEEEEECCT----TSCCC----HHHHHHHHHHH---CCS
T ss_pred HHc--CCCCEEEEcCCCHHHHHHHHHHcCC-----------eEEEecCCC----CCCCC----HHHHHHHhhcc---CCC
Confidence 653 2567899999999988765543211 122232221 23345 56777777642 456
Q ss_pred EEEEccccCCCceeeCCCChHHHHHHHHHHh--CCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccc
Q 013235 257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKA--GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGA 334 (447)
Q Consensus 257 avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~piga 334 (447)
+|+++..++++|.+. +.+.+++|.++|++| |+++|+||+|++|+..+ .....+.++..+++.+++|...+|+++|+
T Consensus 160 ~v~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~G~r~G~ 237 (367)
T 3euc_A 160 IVYLAYPNNPTGNLF-DAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES-WMSRLTDFGNLLVMRTVSKLGLAGIRLGY 237 (367)
T ss_dssp EEEEESSCTTTCCCC-CHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC-SGGGGGTCTTEEEEEECCCTTSCSCCEEE
T ss_pred EEEEcCCCCCCCCCC-CHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc-hHHHHhhCCCEEEEecchhhcccccCcee
Confidence 777777788888876 667799999999999 99999999999987555 34444555555667789999446899999
Q ss_pred cccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEE
Q 013235 335 VVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414 (447)
Q Consensus 335 v~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~gie 414 (447)
+++++++++.+... ..+|+.|+++++++.++|+. .+..++..+..+.+++.|.+..++++.+..+++.|.+++++
T Consensus 238 ~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~ 312 (367)
T 3euc_A 238 VAGDPQWLEQLDKV--RPPYNVNVLTEATALFALEH---VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPSAANFLLAR 312 (367)
T ss_dssp EEECHHHHHHHGGG--CCSSCCCHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCCSSSEEEEE
T ss_pred eeeCHHHHHHHHHh--CCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCeEEEEE
Confidence 99999999888643 35788999999999999875 22333333333444444444444454455567788898887
Q ss_pred EeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 415 FVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 415 l~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+. ...++.+.|.++||++.+
T Consensus 313 ~~-----------~~~~l~~~l~~~gi~v~~ 332 (367)
T 3euc_A 313 VP-----------DAAQTFDRLLARKVLIKN 332 (367)
T ss_dssp CS-----------CHHHHHHHHHTTTEECEE
T ss_pred CC-----------CHHHHHHHHHHCCeEEEE
Confidence 73 135688889999999874
No 63
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.95 E-value=5.8e-28 Score=243.26 Aligned_cols=324 Identities=12% Similarity=0.069 Sum_probs=216.8
Q ss_pred eEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-cccchHHHHHHHHHHHhCCC---CC
Q 013235 83 LNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPG---NL 158 (447)
Q Consensus 83 ~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~~~~~~elae~L~~~~~~---~~ 158 (447)
+....+.+.+++|.+|+++|||.+|.. .++ .+|.|.+|+.++++...+... .+..+...++++.|.+.++. ..
T Consensus 14 ~~~~~~~~~~~~~~~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~ 90 (396)
T 3jtx_A 14 FARLHEAMQGISAPEGMEAVPLHIGEP--KHP-TPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDA 90 (396)
T ss_dssp HHHHHHHTTTCCCCTTCCCEECSCCSC--CSC-CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCT
T ss_pred HHHHHHHHHhhhhccCCCeEEeCCcCC--CCC-CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCC
Confidence 333456677778999999999999885 445 689999999998865432221 22345566677777666542 35
Q ss_pred c-eEEEcCCHHHHHHHHHHHHHhhcC---CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCC
Q 013235 159 K-VVFFTNSGTEANELAIMMARLYTG---CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGA 234 (447)
Q Consensus 159 ~-~v~~~~sGseA~e~Aik~ar~~t~---~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~ 234 (447)
+ +|++++||++|++.+++......+ ++.|++..++||+....+...+. .+..++.+ ...|..
T Consensus 91 ~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~---~~g~~~ 156 (396)
T 3jtx_A 91 DNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGG-----------EIHFANCP---APSFNP 156 (396)
T ss_dssp TTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTC-----------EEEEEECC---TTTCCC
T ss_pred CCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCC-----------EEEEeecC---CCCCcc
Confidence 6 899999999999999997754211 26899999999987765543321 12222221 112222
Q ss_pred ChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-c--
Q 013235 235 DGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-E-- 311 (447)
Q Consensus 235 d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~-- 311 (447)
| .++|++.+.. ++.+++++..++++|.+. +.+.+++|.++|++||+++|+||+|++|.++|...++. +
T Consensus 157 d----~~~l~~~~~~----~~~~v~l~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 227 (396)
T 3jtx_A 157 D----WRSISEEVWK----RTKLVFVCSPNNPSGSVL-DLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAA 227 (396)
T ss_dssp C----GGGSCHHHHH----TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHH
T ss_pred C----HHHHHHhhcc----CcEEEEEECCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhh
Confidence 4 3455555543 456666655577888766 56679999999999999999999999998877323322 1
Q ss_pred -----ccCCCCCEEEeecccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 013235 312 -----AHGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGS 385 (447)
Q Consensus 312 -----~~gv~pDivt~sK~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~ 385 (447)
.++..+++.++||.++ +|+|+|++++++++++.+.......+++.|+++++++.++|+. ++..++.++..+
T Consensus 228 ~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~ 304 (396)
T 3jtx_A 228 AQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDD---EQHVIDNRRLYQ 304 (396)
T ss_dssp HHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHC---CHHHHHHHHHHH
T ss_pred hhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 1455566778999987 6899999999999999887655667888999999999998863 333333333333
Q ss_pred HHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235 386 YLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS 445 (447)
Q Consensus 386 ~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~ 445 (447)
..++.+.+..+++-.+ .....|+++++++... ...++.+.|+ ++||++.+
T Consensus 305 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~gi~v~~ 355 (396)
T 3jtx_A 305 EKFERVIPILQQVFDV-KLPDASFYIWLKVPDG---------DDLAFARNLWQKAAIQVLP 355 (396)
T ss_dssp HHHHHHHHHHTTTSCC-CCCSSSSEEEEECTTS---------CHHHHHHHHHHHHCEECEE
T ss_pred HHHHHHHHHHHhcCCc-cCCCeeEEEEEECCCC---------CHHHHHHHHHHHCCEEEeC
Confidence 3333333333332111 1234478888887321 1356778885 46999864
No 64
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.95 E-value=5.4e-28 Score=244.04 Aligned_cols=310 Identities=11% Similarity=0.045 Sum_probs=211.1
Q ss_pred CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHH
Q 013235 98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM 176 (447)
Q Consensus 98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik 176 (447)
++++|||.+|.... .||++|.+.+++.++++...+....|.. ....+++++|+++++.+.++|++++||++|++.+++
T Consensus 31 ~~~~i~l~~g~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~ 109 (397)
T 2zyj_A 31 RPGILSFAGGLPAP-ELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGK 109 (397)
T ss_dssp STTCEEESSCCCCG-GGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred CCCceecCCCCCCc-hhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHH
Confidence 45789999888643 5889999999999998764221223433 346788888888876556789999999999999998
Q ss_pred HHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeE
Q 013235 177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA 256 (447)
Q Consensus 177 ~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a 256 (447)
... .++++|++.+++||+....+...+. .+..++.. .. +.| .++|++.+... +++
T Consensus 110 ~~~--~~gd~Vl~~~p~y~~~~~~~~~~g~-----------~~~~~~~~--~~---~~d----~~~l~~~l~~~---~~~ 164 (397)
T 2zyj_A 110 VFL--DEGSPVLLEAPSYMGAIQAFRLQGP-----------RFLTVPAG--EE---GPD----LDALEEVLKRE---RPR 164 (397)
T ss_dssp HHC--CTTCEEEEEESCCHHHHHHHHTTCC-----------EEEEEEEE--TT---EEC----HHHHHHHHHHC---CCS
T ss_pred HhC--CCCCEEEEeCCCcHHHHHHHHHcCC-----------EEEecCcC--CC---CCC----HHHHHHHHhhc---CCe
Confidence 763 2457899999999987765443211 12222211 01 123 56787777642 345
Q ss_pred EE-EEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCC------CCEEEeeccccCC
Q 013235 257 GF-LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVV------PDIVTMAKGIGNG 329 (447)
Q Consensus 257 av-i~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~------pDivt~sK~lg~G 329 (447)
+| ++...++++|.+. +.+++++|.++|++||+++|+||+|++|+++|.....+..++.. ..+.+++|.+++|
T Consensus 165 ~v~~~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G 243 (397)
T 2zyj_A 165 FLYLIPSFQNPTGGLT-PLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPG 243 (397)
T ss_dssp CEEECCBSCTTTCCBC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGG
T ss_pred EEEECCCCcCCCCCcC-CHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccccc
Confidence 65 4455677788765 67899999999999999999999999998877322333333222 3345789999989
Q ss_pred ccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhcC-Ceee-E
Q 013235 330 IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYG-IIGD-V 404 (447)
Q Consensus 330 ~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~-~i~~-v 404 (447)
+|+|++++++++++.+....+..+++.|+++++++.++|+.... +++.+++++..+++.+.|++. ++ .+.. .
T Consensus 244 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~g~~~~~ 320 (397)
T 2zyj_A 244 LRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDRE---VPKEVRYTR 320 (397)
T ss_dssp GCCEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH---SCTTSEECC
T ss_pred ceeEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCeEEcc
Confidence 99999999999998887544556788899999998888863211 122233334444444444332 23 1322 2
Q ss_pred eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 405 rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
++.|+++++++.+.. ...++.+.|+++||++.+
T Consensus 321 ~~~g~~~~~~~~~~~--------~~~~~~~~l~~~gi~v~~ 353 (397)
T 2zyj_A 321 PKGGMFVWMELPKGL--------SAEGLFRRALEENVAFVP 353 (397)
T ss_dssp CSBSSEEEEECSTTC--------CHHHHHHHHHHTTEEEEE
T ss_pred CCccEEEEEEcCCCC--------CHHHHHHHHHHCCCEEec
Confidence 456889988874210 135788999999999864
No 65
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.9e-27 Score=243.03 Aligned_cols=315 Identities=13% Similarity=0.092 Sum_probs=213.4
Q ss_pred CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHh----CC--CCCceEEEcCCHHH
Q 013235 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASK----MP--GNLKVVFFTNSGTE 169 (447)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~----~~--~~~~~v~~~~sGse 169 (447)
.|+.+|||..|.. .++ .+|.|.+|+.++++... ...|.. ....+|.+.|+++ ++ .+.++|++++||++
T Consensus 55 ~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~ 129 (447)
T 3b46_A 55 QGRELINLGQGFF--SYS-PPQFAIKEAQKALDIPM--VNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANE 129 (447)
T ss_dssp TTSCCEECCCCSC--SSC-CCHHHHHHHHHHTTSGG--GGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHH
T ss_pred cCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhCcC--CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHH
Confidence 4568999998876 455 78999999999987521 112322 1233444444444 33 23467999999999
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecC-CCC-------cCCCCCCChHHHHH
Q 013235 170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALN-PDP-------YRGVFGADGEMYAK 241 (447)
Q Consensus 170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~-p~~-------~~~~~~~d~~~~~~ 241 (447)
|++.+++.+. .++++|++.+++||+....+...+. .+..++. +.. ....|..| .+
T Consensus 130 al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~-----------~~~~v~~~~~~~~~~~~~~~~~~~~d----~~ 192 (447)
T 3b46_A 130 GILSCLMGLL--NAGDEVIVFEPFFDQYIPNIELCGG-----------KVVYVPINPPKELDQRNTRGEEWTID----FE 192 (447)
T ss_dssp HHHHHHHHHC--CTTCEEEEEESCCTTHHHHHHHTTC-----------EEEEEEEECCGGGGTSCBCSTTSEEC----HH
T ss_pred HHHHHHHHHc--CCCCEEEEeCCCchhHHHHHHHcCC-----------EEEEEeCCCccccccccccccCcccC----HH
Confidence 9999999763 3568899999999987665433221 1111221 100 00123334 56
Q ss_pred HHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC--Ccccc--cccCCCC
Q 013235 242 DVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS--HFWGF--EAHGVVP 317 (447)
Q Consensus 242 ~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~--~~~~~--~~~gv~p 317 (447)
+|++.+. .++++|+++..++++|.+. +++++++|.++|++||+++|+||+|++|.++|. .+..+ +.++..+
T Consensus 193 ~l~~~l~----~~~~~v~l~~p~nptG~~~-~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i 267 (447)
T 3b46_A 193 QFEKAIT----SKTKAVIINTPHNPIGKVF-TREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTL 267 (447)
T ss_dssp HHHTTCC----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEE
T ss_pred HHHHhhc----cCCeEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEE
Confidence 6666553 3678888888888888775 688999999999999999999999999987762 12222 1346667
Q ss_pred CEEEeecccc-CCcccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHH
Q 013235 318 DIVTMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDK----LQNNAHVVGSYLKERL 391 (447)
Q Consensus 318 Divt~sK~lg-~G~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~----l~~~~~~~g~~l~~~L 391 (447)
++.+++|.++ +|+|+|++++ ++++++.+....+..+|+.++++++++.++|+....++ +.++++++.+++.+.|
T Consensus 268 ~i~S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L 347 (447)
T 3b46_A 268 TVGSAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIF 347 (447)
T ss_dssp EEEEHHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCchhcCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 7778999999 7999999999 99999888754456788999999999999998764344 4455556666666666
Q ss_pred HHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCC----------HHHHHHHHHHHH-hCCceeec
Q 013235 392 TALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA----------KAETLYIMDKMK-GICALFFS 445 (447)
Q Consensus 392 ~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~----------~~~~~~~~~~l~-~~Gvlv~~ 445 (447)
+++ ++....+..|+++++++... ..|. .....++++.|+ ++||++.+
T Consensus 348 ~~~----g~~~~~~~~g~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p 405 (447)
T 3b46_A 348 DEL----GLPYTAPEGTYFVLVDFSKV---KIPEDYPYPEEILNKGKDFRISHWLINELGVVAIP 405 (447)
T ss_dssp HHH----TCCEECCSBSSEEEEECTTC---CCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBC
T ss_pred HHC----CCeecCCCeeEEEEEecccc---cCccccccccccccCCCHHHHHHHHHHhCCEEEEC
Confidence 554 32222355688898888421 1111 012456888887 58999864
No 66
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.95 E-value=2.3e-27 Score=244.06 Aligned_cols=313 Identities=11% Similarity=0.068 Sum_probs=211.4
Q ss_pred CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhC----CC-CCceEEEcCCHHHHH
Q 013235 98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM----PG-NLKVVFFTNSGTEAN 171 (447)
Q Consensus 98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~----~~-~~~~v~~~~sGseA~ 171 (447)
+..+|||.+|..... +|.++++.+|+.++++........|. .....+|++.|++++ +. +.++|++++||++|+
T Consensus 75 ~~~~i~l~~g~p~~~-~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al 153 (448)
T 3aow_A 75 TSDIISLAGGLPNPK-TFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQAL 153 (448)
T ss_dssp TSSSEECCCCCCCGG-GSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHH
T ss_pred CCCcEeCCCCCCCch-hCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHH
Confidence 456899999887543 57889999999999876421112232 223455666666655 54 567899999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc-
Q 013235 172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG- 250 (447)
Q Consensus 172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~- 250 (447)
+.+++... .+++.|++.+++||+....+... |...+..|... .+.| .++|++.+...
T Consensus 154 ~~~~~~l~--~~Gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~v~~~~---~g~d----~~~L~~~l~~~~ 211 (448)
T 3aow_A 154 DLIGRVFL--NPGDIVVVEAPTYLAALQAFNFY-------------EPQYIQIPLDD---EGMK----VEILEEKLKELK 211 (448)
T ss_dssp HHHHHHHC--CTTCEEEEEESCCHHHHHHHHTT-------------CCEEEEEEEET---TEEC----HHHHHHHHHHHH
T ss_pred HHHHHHHc--CCCCEEEEeCCChHHHHHHHHHc-------------CCEEEEeccCC---CCCC----HHHHHHHHhhhh
Confidence 99999763 25688999999999876654332 12222221111 1123 56777777510
Q ss_pred -CCCCeEEEEEcc-ccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCC---cccccccCCCCCEEEeecc
Q 013235 251 -TSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH---FWGFEAHGVVPDIVTMAKG 325 (447)
Q Consensus 251 -~~~~~aavi~Ep-i~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~---~~~~~~~gv~pDivt~sK~ 325 (447)
...++++|++.| .++++|.+ .+.+++++|.++|++||+++|+||+|++|.+.|.. ++.++..+..+++.+|||.
T Consensus 212 ~~~~~~k~v~~~~~~~NPtG~~-~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~ 290 (448)
T 3aow_A 212 SQGKKVKVVYTVPTFQNPAGVT-MNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKI 290 (448)
T ss_dssp HTTCCEEEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTT
T ss_pred ccCCCCeEEEECCCCCCCcCCC-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhh
Confidence 112677876665 56778876 47889999999999999999999999998776632 2333334455677789999
Q ss_pred ccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHHHHHHHhcC-C
Q 013235 326 IGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKL----QNNAHVVGSYLKERLTALKDKYG-I 400 (447)
Q Consensus 326 lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l----~~~~~~~g~~l~~~L~~l~~~~~-~ 400 (447)
+++|+|+|++++++++++.+.......+++.|+++++++.++|+...-++. .+..+++.+++.+.|++. ++ .
T Consensus 291 ~~~GlriG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~g 367 (448)
T 3aow_A 291 LAPGFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEF---MPEG 367 (448)
T ss_dssp TCGGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCTT
T ss_pred ccccccEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCC
Confidence 999999999999999998887544556788899999999888864211222 233334444444444432 23 2
Q ss_pred eeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 401 IGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 401 i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+..+ +..|+++++++.+. ....++++.|+++||++.+
T Consensus 368 ~~~~~p~~g~~~~v~~~~~--------~~~~~l~~~l~~~gV~v~p 405 (448)
T 3aow_A 368 VKWTKPEGGMFIWVTLPDG--------IDSKKMLERAIKKGVAYVP 405 (448)
T ss_dssp CEECCCSBSSEEEEECSTT--------CCHHHHHHHHHHTTEECEE
T ss_pred eEEeCCCccEEEEEEcCCC--------CCHHHHHHHHHHCCcEEEc
Confidence 3333 34588899888321 0135788999999999865
No 67
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.95 E-value=1.2e-26 Score=231.14 Aligned_cols=297 Identities=12% Similarity=0.026 Sum_probs=207.2
Q ss_pred CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHH
Q 013235 98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177 (447)
Q Consensus 98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ 177 (447)
++.+|||.+|.. +++ .+|+|.+|+.++++.. ..|+++...+++++|+++++.+.++++|++||++|++.+++.
T Consensus 31 ~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~ 103 (363)
T 3ffh_A 31 LTKITKLSSNEN--PLG-TSKKVAAIQANSSVET----EIYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRV 103 (363)
T ss_dssp CSCCEECSSCSC--TTC-CCHHHHHHHHTCBSCC----CBC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHH
T ss_pred CCceEEccCCCC--CCC-CCHHHHHHHHHHHHHh----hcCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHH
Confidence 357999998866 556 7899999998876543 345666778999999999876678899999999999999986
Q ss_pred HHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEE
Q 013235 178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG 257 (447)
Q Consensus 178 ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aa 257 (447)
.. .++++|++.+++|++....+...+. .+..++... .+..| .+++++.+. +++++
T Consensus 104 ~~--~~gd~vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~~----~~~~d----~~~l~~~i~----~~~~~ 158 (363)
T 3ffh_A 104 LL--DTTTNTVMATPTFVQYRQNALIEGA-----------EVREIPLLQ----DGEHD----LEGMLNAID----EKTTI 158 (363)
T ss_dssp HC--STTCEEEEEESSCHHHHHHHHHHTC-----------EEEEEECCT----TSCCC----HHHHHHHCC----TTEEE
T ss_pred Hc--cCCCEEEEcCCChHHHHHHHHHcCC-----------EEEEecCCC----CCCcC----HHHHHHhcc----cCCCE
Confidence 53 3568999999999986655443211 122333221 12234 566776663 25778
Q ss_pred EEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCC----EEEeecccc-CCccc
Q 013235 258 FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD----IVTMAKGIG-NGIPL 332 (447)
Q Consensus 258 vi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pD----ivt~sK~lg-~G~pi 332 (447)
|+++..++++|.+.+ .+.+++|.+.|++ |+++|+||+|++|++ | +.+........+| +.+++|.+| +|+|+
T Consensus 159 v~~~~p~nptG~~~~-~~~l~~l~~~~~~-~~~li~De~~~~~~~-~-~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~ 234 (363)
T 3ffh_A 159 VWICNPNNPTGNYIE-LADIQAFLDRVPS-DVLVVLDEAYIEYVT-P-QPEKHEKLVRTYKNLIITRTFSKIYGLASARV 234 (363)
T ss_dssp EEEESSCTTTCCCCC-HHHHHHHHTTSCT-TSEEEEECTTGGGCS-S-CCCCCGGGGGTCTTEEEEEESSSTTCCSSCCC
T ss_pred EEEeCCCCCcCCCcC-HHHHHHHHHhCCC-CcEEEEeCchHhhcC-c-cccCHHHHhhcCCCEEEEeechhhhcCchhce
Confidence 888877888898774 4445555555555 999999999999987 6 3443332222344 457899998 79999
Q ss_pred cccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEE
Q 013235 333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG 412 (447)
Q Consensus 333 gav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~g 412 (447)
|++++++++++.+.... .+|+.|+++++++.++|+. .+..++.++..+..++.|.+..+++..+..+++.|.+++
T Consensus 235 G~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~ 309 (363)
T 3ffh_A 235 GYGIADKEIIRQLNIVR--PPFNTTSIGQKLAIEAIKD---QAFIGECRTSNANGIKQYEAFAKRFEKVKLYPANGNFVL 309 (363)
T ss_dssp EEEEECHHHHHHHHHTC--CSCCCBHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCSSEEE
T ss_pred eeeecCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHhhCCCceECCCCCeEEE
Confidence 99999999998887543 4788999999999999962 234444444444444455444444333445677889988
Q ss_pred EEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 413 VEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 413 iel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+++.. ...++.+.|+++||++.+
T Consensus 310 ~~~~~----------~~~~~~~~l~~~gi~v~~ 332 (363)
T 3ffh_A 310 IDLGI----------EAGTIFSYLEKNGYITRS 332 (363)
T ss_dssp EECSS----------CHHHHHHHHHHTTEECEE
T ss_pred EECCC----------CHHHHHHHHHHCCeEEEe
Confidence 88732 146788999999999875
No 68
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.95 E-value=9.8e-27 Score=237.62 Aligned_cols=317 Identities=15% Similarity=0.096 Sum_probs=215.5
Q ss_pred ecCCCeEEEecCCcccc-cCCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCC-----CCCceEEEcCCH
Q 013235 95 DENGRRYLDAFGGIATV-CCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMP-----GNLKVVFFTNSG 167 (447)
Q Consensus 95 d~dG~~ylD~~~g~~~~-~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~-----~~~~~v~~~~sG 167 (447)
+.+|+.+|||..|.... +-.+.+|.|.+|+.++++... ...| +.....+++++|++++. ...++|++++||
T Consensus 50 ~~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~ 127 (427)
T 3dyd_A 50 PNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGK--YNGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGC 127 (427)
T ss_dssp CCTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCC--SSSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSH
T ss_pred ccCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCc--CCCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCc
Confidence 45688999999887532 123478999999999988742 1233 34456788888888876 456789999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235 168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247 (447)
Q Consensus 168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i 247 (447)
++|++.+++.+.. +++.|++.+++|++....+...+ .....+|......|+.| ++++++.+
T Consensus 128 t~al~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~d----~~~l~~~l 188 (427)
T 3dyd_A 128 SQAIDLCLAVLAN--PGQNILVPRPGFSLYKTLAESMG-------------IEVKLYNLLPEKSWEID----LKQLEYLI 188 (427)
T ss_dssp HHHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHTT-------------CEEEEEEEEGGGTTEEC----HHHHHSSC
T ss_pred HHHHHHHHHHhcC--CCCEEEEcCCCchhHHHHHHHcC-------------CEEEEEecccccCCCCC----HHHHHHHh
Confidence 9999999997643 66889999999998765544332 22222221111122223 45666555
Q ss_pred HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE---Eeec
Q 013235 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV---TMAK 324 (447)
Q Consensus 248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv---t~sK 324 (447)
. + ++.++++...++++|.+. +++.+++|.++|+++|+++|+||+|++|+++|..+..+..++..++++ +++|
T Consensus 189 ~---~-~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK 263 (427)
T 3dyd_A 189 D---E-KTACLIVNNPSNPCGSVF-SKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAK 263 (427)
T ss_dssp C---T-TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTT
T ss_pred c---c-CCCEEEEECCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccc
Confidence 3 2 345555555578888765 788899999999999999999999999998884444556666667777 7999
Q ss_pred ccc-CCccccccccC-------HHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHH
Q 013235 325 GIG-NGIPLGAVVTT-------PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTA 393 (447)
Q Consensus 325 ~lg-~G~pigav~~~-------~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~ 393 (447)
.++ .|+|+|+++++ +++++.+... ...+++.|+++++++.++|+...++ +..++++++.+++.+.|++
T Consensus 264 ~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 342 (427)
T 3dyd_A 264 RWLVPGWRLGWILIHDRRDIFGNEIRDGLVKL-SQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAA 342 (427)
T ss_dssp TSSCGGGCCEEEEEECSTTSSHHHHHHHHHHH-HHHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCcceEEEEecCcchhhHHHHHHHHHHH-HhccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 976 68999999987 5677766532 2247889999999999999853322 2334444555555555544
Q ss_pred HHHhcCCeeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235 394 LKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS 445 (447)
Q Consensus 394 l~~~~~~i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~ 445 (447)
++.+..+ +..|+++.+.+.... .|+.....++++.|+ ++||++.+
T Consensus 343 ----~~g~~~~~p~~g~~~~~~l~~~~---~~~~~~~~~~~~~l~~~~gV~v~~ 389 (427)
T 3dyd_A 343 ----IPGLRPVRPSGAMYLMVGIEMEH---FPEFENDVEFTERLVAEQSVHCLP 389 (427)
T ss_dssp ----STTEEEECCSBTTEEEEEECGGG---CTTCSSHHHHHHHHHHHHCEECEE
T ss_pred ----CCCceecCCCeeEEEEEecCHhh---cCCCCCHHHHHHHHHHHCCEEEEC
Confidence 4445444 455778888874221 111112356778875 78999864
No 69
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.95 E-value=1.3e-27 Score=243.82 Aligned_cols=316 Identities=11% Similarity=0.047 Sum_probs=211.2
Q ss_pred CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhC----C---CCCceEEEcCCHHH
Q 013235 98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P---GNLKVVFFTNSGTE 169 (447)
Q Consensus 98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~----~---~~~~~v~~~~sGse 169 (447)
++.+|||.+|.... .||++|.|.+|+.++++........|.. ....++.+.|++++ + .+.++|++++||++
T Consensus 42 ~~~~idl~~g~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~ 120 (425)
T 1vp4_A 42 DKDAISFGGGVPDP-ETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQ 120 (425)
T ss_dssp STTCEECCCCSCCG-GGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHH
T ss_pred CCCceeCCCCCCCc-ccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHH
Confidence 56799999988643 5889999999999998763211122322 12344555555444 4 45678999999999
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235 170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF 249 (447)
Q Consensus 170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~ 249 (447)
|++.+++... .+++.|++.+++||+....+...+. .+..++.. .. +.| .++|++.+..
T Consensus 121 al~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~g~-----------~~~~v~~~--~~---~~d----~~~l~~~l~~ 178 (425)
T 1vp4_A 121 ALDLIGKLFL--DDESYCVLDDPAYLGAINAFRQYLA-----------NFVVVPLE--DD---GMD----LNVLERKLSE 178 (425)
T ss_dssp HHHHHHHHHC--CTTCEEEEEESCCHHHHHHHHTTTC-----------EEEEEEEE--TT---EEC----HHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEEeCCCcHHHHHHHHHcCC-----------EEEEeccC--CC---CCC----HHHHHHHHHh
Confidence 9999998653 2457899999999987765443211 11222211 11 123 5667766653
Q ss_pred c----CCCCeEEEE-EccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCC---CEEE
Q 013235 250 G----TSGHVAGFL-SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVP---DIVT 321 (447)
Q Consensus 250 ~----~~~~~aavi-~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~p---Divt 321 (447)
. ...++++|+ +...++++|.+. +.+++++|.++|++||+++|+||+|++|.+.|.....+..++..+ .+.+
T Consensus 179 ~~~~~~~~~~~~v~~~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s 257 (425)
T 1vp4_A 179 FDKNGKIKQVKFIYVVSNFHNPAGVTT-SLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNT 257 (425)
T ss_dssp HHHTTCGGGEEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEE
T ss_pred hhhcccCCCceEEEECCCCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEec
Confidence 1 012567774 444667778765 678999999999999999999999999987773223333232222 3447
Q ss_pred eeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh--h--hhHHHHHHHHHHHHHHHHHHHHHh
Q 013235 322 MAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--K--DKLQNNAHVVGSYLKERLTALKDK 397 (447)
Q Consensus 322 ~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~--~--~~l~~~~~~~g~~l~~~L~~l~~~ 397 (447)
++|.+++|+|+|++++++++++.+.......+++.|+++++++.++|+... + ++..++++++.+++.+.|++....
T Consensus 258 ~sK~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 337 (425)
T 1vp4_A 258 FSKVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSD 337 (425)
T ss_dssp STTTTCGGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred cccccccccceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 899999999999999999999888754455678889999999999997641 1 234455556666676666654221
Q ss_pred cCCeeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 398 YGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 398 ~~~i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
++.+..+ ++.|+++++++.+.. ...++.+.|+++||++.+
T Consensus 338 ~~g~~~~~~~~g~~~~~~~~~~~--------~~~~l~~~l~~~gi~v~~ 378 (425)
T 1vp4_A 338 IPGVKWVKSEGGLFIWLTLPEGF--------DTWEMFEYAKRKKVFYVP 378 (425)
T ss_dssp STTCEECCCSBSSEEEEECCTTC--------CTTTTHHHHHHHTEECEE
T ss_pred CCceEEecCCccEEEEEEcCCCC--------CHHHHHHHHHHCCCEEEC
Confidence 1123222 456889999884211 023578888888999864
No 70
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.95 E-value=4.9e-27 Score=240.14 Aligned_cols=322 Identities=15% Similarity=0.085 Sum_probs=210.6
Q ss_pred EecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccc---------ccccc-hHHHHHHHHHHHhCC--------
Q 013235 94 FDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST---------VLYLN-HAIADFAEALASKMP-------- 155 (447)
Q Consensus 94 ~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~---------~~~~~-~~~~elae~L~~~~~-------- 155 (447)
||.++|.+.++..|...++++ ++.+.+++.++.....+.. ..|.. ....+|+++|++++.
T Consensus 31 y~~~~~p~~~i~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~ 108 (435)
T 3piu_A 31 YHEVHNTNGIIQMGLAENQLC--FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVT 108 (435)
T ss_dssp CBTTTBTTSBEECSSCCCCSS--HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSC
T ss_pred CCcccCCCCeEEecccccccc--HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCC
Confidence 788888887877787777666 6888888888766543320 12332 234567777776653
Q ss_pred CCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCC
Q 013235 156 GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGAD 235 (447)
Q Consensus 156 ~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d 235 (447)
...++|+|++||++|++.+++.... +++.|++.+++|++......... |...+..|....+.|..|
T Consensus 109 ~~~~~v~~~~gg~~a~~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~~------------g~~~~~~~~~~~~~~~~d 174 (435)
T 3piu_A 109 FDPNHLVLTAGATSANETFIFCLAD--PGEAVLIPTPYYPGFDRDLKWRT------------GVEIVPIHCTSSNGFQIT 174 (435)
T ss_dssp CCGGGEEEEEHHHHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHTTTTT------------CCEEEEEECCGGGTSCCC
T ss_pred CCHHHEEEcCChHHHHHHHHHHhcC--CCCeEEECCCccccHHHHHHHhc------------CCEEEEeeCCCccCCcCC
Confidence 3467899999999999999987643 56789999999987655433122 222222222222234345
Q ss_pred hHHHHHHHHHHHHcc--CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc
Q 013235 236 GEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH 313 (447)
Q Consensus 236 ~~~~~~~le~~i~~~--~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~ 313 (447)
.++|++.+... ...++++|++++.++++|.+. +.+.+++|.++|++||+++|+||+|++++++|..+......
T Consensus 175 ----~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~ 249 (435)
T 3piu_A 175 ----ETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTM-TRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEV 249 (435)
T ss_dssp ----HHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHH
T ss_pred ----HHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHh
Confidence 45666666531 123677888887788888765 67789999999999999999999999988877433332222
Q ss_pred CCC---------CC----EEEeecccc-CCcccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh--h---
Q 013235 314 GVV---------PD----IVTMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--K--- 373 (447)
Q Consensus 314 gv~---------pD----ivt~sK~lg-~G~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~--~--- 373 (447)
+.. +| +.+++|++| +|+|+|++++ ++++.+.+.. +..++..|+++++++.++|+..+ +
T Consensus 250 ~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (435)
T 3piu_A 250 LKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK--MSSFGLVSSQTQHLLSAMLSDKKLTKNYI 327 (435)
T ss_dssp HHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHH--HGGGSCCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred ccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHH--HhhcCCCCHHHHHHHHHHhcChHHHHHHH
Confidence 111 44 557999998 8999999999 5777776653 34566788999998888876332 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecc-eeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235 374 DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRG-FLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS 445 (447)
Q Consensus 374 ~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G-l~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~ 445 (447)
++..+++++..+++++.|++ .+ +..+++.| +++++++..... .+......++++.|+++ ||++.+
T Consensus 328 ~~~~~~~~~~~~~l~~~L~~----~g-~~~~~~~~g~~~~~~l~~~~~--~~~~~~~~~~~~~l~~~~gi~v~~ 394 (435)
T 3piu_A 328 AENHKRLKQRQKKLVSGLQK----SG-ISCLNGNAGLFCWVDMRHLLR--SNTFEAEMELWKKIVYEVHLNISP 394 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----TT-CEECCCCSSSEEEEECGGGSS--SSSHHHHHHHHHHHHHTSCEECEE
T ss_pred HHHHHHHHHHHHHHHHHHHh----cC-CcccCCCeeEEEEEEcccccc--cCCchhHHHHHHHHHHHCCEEEeC
Confidence 12233344444444444443 33 33344554 899999854221 12222356788889887 999875
No 71
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.95 E-value=4e-27 Score=238.95 Aligned_cols=311 Identities=14% Similarity=0.079 Sum_probs=204.5
Q ss_pred cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhC----C--CCC-ceEEEcCCH
Q 013235 96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKM----P--GNL-KVVFFTNSG 167 (447)
Q Consensus 96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~----~--~~~-~~v~~~~sG 167 (447)
.+|+++|||.+|.. ++| .+|.|.+|+.++++... ...|. .....++++.|++++ + .+. ++|++++||
T Consensus 34 ~~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~ 108 (412)
T 2x5d_A 34 RRGEDIIDLSMGNP--DGP-TPPHIVEKLCTVAQRED--THGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGS 108 (412)
T ss_dssp HTTCCCEECSSCCC--CSC-CCHHHHHHHHHTC-----------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCH
T ss_pred hcCCCEEecCCCCC--CCC-CCHHHHHHHHHHHhCCC--CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCCh
Confidence 57889999998875 567 78999999999886541 11232 233455666666555 4 234 589999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235 168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247 (447)
Q Consensus 168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i 247 (447)
++|++.+++... .+++.|++.+++||+....+...+. .+..++... . ++..--++++++.+
T Consensus 109 ~~a~~~~~~~~~--~~gd~Vl~~~p~~~~~~~~~~~~g~-----------~~~~~~~~~--~----~~~~~d~~~l~~~i 169 (412)
T 2x5d_A 109 KEGLAHLMLATL--DHGDTILVPNPSYPIHIYGAVIAGA-----------QVRSVPLVP--G----IDFFNELERAIRES 169 (412)
T ss_dssp HHHHHHHHHHHC--CTTCEEEEEESCCHHHHHHHHHHTC-----------EEEEEECST--T----SCHHHHHHHHHHTE
T ss_pred HHHHHHHHHHhC--CCCCEEEEcCCCchhHHHHHHHcCC-----------EEEEeecCC--c----cCCCCCHHHHHHhc
Confidence 999999998753 2457899999999987765543211 122222110 0 01001145555554
Q ss_pred HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccc----cCCCCCEEEee
Q 013235 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA----HGVVPDIVTMA 323 (447)
Q Consensus 248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~----~gv~pDivt~s 323 (447)
. + ++++|++...++++|.+. +.+++++|.++|++||+++|+||+|++|.++|.....+.. .+....+.+++
T Consensus 170 ~---~-~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~s 244 (412)
T 2x5d_A 170 I---P-KPRMMILGFPSNPTAQCV-ELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLS 244 (412)
T ss_dssp E---S-CCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC
T ss_pred c---c-CceEEEECCCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCc
Confidence 3 2 445555543466677764 6789999999999999999999999999877632222222 23334455799
Q ss_pred cccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013235 324 KGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGI 400 (447)
Q Consensus 324 K~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~ 400 (447)
|.++ +|+|+|++++++++++.+.......+++.|+++++++.++|+..++ +++.++++++.+++.+.|+++ ....
T Consensus 245 K~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~ 322 (412)
T 2x5d_A 245 KSYNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA--GWMV 322 (412)
T ss_dssp -CCSCTTSCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH--TCCC
T ss_pred cccCCcccceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC--CCEe
Confidence 9998 8999999999999998887554556889999999999999875322 345566777777777777765 2222
Q ss_pred eeeEeec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh-CCceeec
Q 013235 401 IGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKG-ICALFFS 445 (447)
Q Consensus 401 i~~vrg~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~ 445 (447)
+++. |+++++++.+.- . .....++.+.|++ +||++.+
T Consensus 323 ---~~~~~g~~~~~~~~~~~----~-~~~~~~~~~~l~~~~gi~v~~ 361 (412)
T 2x5d_A 323 ---ENPKASMYVWAKIPEPY----A-HLGSLEFAKKLLQDAKVSVSP 361 (412)
T ss_dssp ---CCCSBSSEEEEECCTTT----G-GGCHHHHHHHHHHHHCEECEE
T ss_pred ---cCCCeeeEEEEEcCCcc----C-CCCHHHHHHHHHHHCCEEEeC
Confidence 3344 677888873210 0 0013568888875 6999874
No 72
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.95 E-value=7.5e-27 Score=233.48 Aligned_cols=302 Identities=11% Similarity=-0.039 Sum_probs=204.5
Q ss_pred cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc-cccchHHHHHHHHHHHhCCC--CCceEEEcCCHHHHHH
Q 013235 96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV-LYLNHAIADFAEALASKMPG--NLKVVFFTNSGTEANE 172 (447)
Q Consensus 96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~-~~~~~~~~elae~L~~~~~~--~~~~v~~~~sGseA~e 172 (447)
.+| .+|||.+|.. +++ .+|.|.+|+.+++....+... ....+...++++.+.+.++. +.++|+|++||++|++
T Consensus 21 ~~g-~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~ 96 (376)
T 3ezs_A 21 PKK-RGLDLGIGEP--QFE-TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLF 96 (376)
T ss_dssp CSS-CCCBCSSCCC--CSC-CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHH
T ss_pred ccC-CEEEeCCCCC--CCC-CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHH
Confidence 467 8999999885 556 689999999988744322111 11234445555555554443 5688999999999999
Q ss_pred HHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCC
Q 013235 173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS 252 (447)
Q Consensus 173 ~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~ 252 (447)
.+++.....++++.|++.+++||+....+...+. .+..++.. ....+ + . ++++.+..
T Consensus 97 ~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~-----------~~~~~~~~--~~~~~--~----~-~l~~~~~~--- 153 (376)
T 3ezs_A 97 NFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKA-----------KSLLMPLT--KENDF--T----P-SLNEKELQ--- 153 (376)
T ss_dssp HHHHHHTTTCSSCEEEEEESCCTHHHHHHHHTTC-----------EEEEEECC--GGGTS--C----C-CCCHHHHH---
T ss_pred HHHHHHcCCCCCCEEEEecCCcHhHHHHHHHcCC-----------EEEEcccC--CCCCc--c----h-hHHhhhcc---
Confidence 9999775433368999999999987665443321 11222211 11111 1 0 23333432
Q ss_pred CCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-c--------ccCCCCCEEEee
Q 013235 253 GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-E--------AHGVVPDIVTMA 323 (447)
Q Consensus 253 ~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~--------~~gv~pDivt~s 323 (447)
++.++++...++++|.+. +.+.+++|.++|++||+++|+||+|++|.++| ..+.. + .++..+++.+++
T Consensus 154 -~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~s 230 (376)
T 3ezs_A 154 -EVDLVILNSPNNPTGRTL-SLEELISWVKLALKHDFILINDECYSEIYENT-PPPSLLEACMLAGNEAFKNVLVIHSLS 230 (376)
T ss_dssp -HCSEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBSSS-CCCCHHHHHHHTTCTTCTTEEEEEEST
T ss_pred -CCCEEEEcCCCCCcCCCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCC-CCCCHHHccccccccccCcEEEEecch
Confidence 334555544477788766 67789999999999999999999999998887 34433 2 345556677899
Q ss_pred cccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 013235 324 KGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG 402 (447)
Q Consensus 324 K~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~ 402 (447)
|.+| +|+|+|++++++++++.+....+..+++.|+++++++.++|+. ++..++.++..+..++.|.+..+ +. .
T Consensus 231 K~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~--~~-~ 304 (376)
T 3ezs_A 231 KRSSAPGLRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLD---DRHAEFFRNIYANNLKLARKIFK--NT-L 304 (376)
T ss_dssp TTTTCGGGCCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHC---SHHHHHHHHHHHHHHHHHHHHST--TC-C
T ss_pred hccCCccceeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHhc--CC-C
Confidence 9997 7999999999999999887655667889999999999998873 33333344333334444433332 22 2
Q ss_pred eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh-CCceeec
Q 013235 403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKG-ICALFFS 445 (447)
Q Consensus 403 ~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~ 445 (447)
.++.|+++++++. ...++++.|++ +||++.+
T Consensus 305 -~~~~~~~~~~~~~-----------~~~~~~~~l~~~~gi~v~~ 336 (376)
T 3ezs_A 305 -IYPYSFYVYLPVQ-----------NGENFAKTLYQNEGIITLP 336 (376)
T ss_dssp -CCSBSSEEEEECS-----------CHHHHHHHHHHHHCCBCEE
T ss_pred -CCCcceEEEEECC-----------CHHHHHHHHHHhCCEEEeC
Confidence 5677899988873 13568888887 8999864
No 73
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.94 E-value=1.3e-25 Score=224.59 Aligned_cols=295 Identities=15% Similarity=0.093 Sum_probs=210.8
Q ss_pred EEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHh------CCCCCceEEEcCCHHHHHHHHH
Q 013235 102 LDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASK------MPGNLKVVFFTNSGTEANELAI 175 (447)
Q Consensus 102 lD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~------~~~~~~~v~~~~sGseA~e~Ai 175 (447)
|||.+|.. ++| .+|++.+++.+++++.......|.++...+++++|+++ ++.+.++|++++|+++|++.++
T Consensus 33 idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~ 109 (369)
T 3cq5_A 33 IRLNTNEN--PYP-PSEALVADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLL 109 (369)
T ss_dssp EECSSCCC--CSC-CCHHHHHHHHHHHHHHGGGTTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHH
T ss_pred eeccCCCC--CCC-CCHHHHHHHHHHHHhcccccccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHH
Confidence 89998876 567 78999999999997742222344444335777777777 5555678999999999999999
Q ss_pred HHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCe
Q 013235 176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV 255 (447)
Q Consensus 176 k~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~ 255 (447)
+... .+++.|++.+++||+....+...+. .+..++.. ..|+.| .+++++.+... ++
T Consensus 110 ~~l~--~~gd~Vl~~~~~y~~~~~~~~~~g~-----------~~~~v~~~----~~~~~d----~~~l~~~i~~~---~~ 165 (369)
T 3cq5_A 110 QAFG--GPGRTALGFQPSYSMHPILAKGTHT-----------EFIAVSRG----ADFRID----MDVALEEIRAK---QP 165 (369)
T ss_dssp HHHC--STTCEEEEEESSCTHHHHHHHHTTC-----------EEEEEECC----TTSSCC----HHHHHHHHHHH---CC
T ss_pred HHhc--CCCCEEEEcCCChHHHHHHHHHcCC-----------EEEEecCC----cCCCCC----HHHHHHHhhcc---CC
Confidence 8763 2558899999999987664433211 12223221 123345 56677776532 45
Q ss_pred EEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cccC-CCCCEEEeecccc-CCccc
Q 013235 256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHG-VVPDIVTMAKGIG-NGIPL 332 (447)
Q Consensus 256 aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~~g-v~pDivt~sK~lg-~G~pi 332 (447)
++|++++.++++|.+.+ ++++.++|+.+++++|+||+|++|++.. ..+.. +.++ ..+++.+++|.++ +|+|+
T Consensus 166 ~~v~~~~~~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 240 (369)
T 3cq5_A 166 DIVFVTTPNNPTGDVTS----LDDVERIINVAPGIVIVDEAYAEFSPSP-SATTLLEKYPTKLVVSRTMSKAFDFAGGRL 240 (369)
T ss_dssp SEEEEESSCTTTCCCCC----HHHHHHHHHHCSSEEEEECTTGGGCCSC-CGGGGTTTCTTTEEEEEESSSTTSCGGGCC
T ss_pred CEEEEeCCCCCCCCCCC----HHHHHHHHHhCCCEEEEECCchhhcCCc-chHHHHhhCCCCEEEEEechHhcCCcccce
Confidence 67888888999998876 7888888888899999999999987643 33332 3344 4456668999998 79999
Q ss_pred cccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeE
Q 013235 333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ-KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLL 411 (447)
Q Consensus 333 gav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~-~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~ 411 (447)
|++++++++++.+.... .+|+.|+++++++.++|+..+ -++..++.+++.+++.+.|++. + +..+++.|.++
T Consensus 241 G~~~~~~~~~~~l~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~~~~~~~~~~~ 313 (369)
T 3cq5_A 241 GYFVANPAFIDAVMLVR--LPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL----G-YAVVPSESNFV 313 (369)
T ss_dssp EEEEECTHHHHHHHTTS--CTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH----T-CEEECCSSSEE
T ss_pred EEEEeCHHHHHHHHHcC--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC----C-CEECCCCCeEE
Confidence 99999999988886532 467899999999999997432 1345566667777777777653 2 33356778888
Q ss_pred EEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 412 GVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 412 giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
++++.. ...++.+.|.++||++.+
T Consensus 314 ~~~~~~----------~~~~l~~~l~~~gi~v~~ 337 (369)
T 3cq5_A 314 FFGDFS----------DQHAAWQAFLDRGVLIRD 337 (369)
T ss_dssp EEECCS----------SHHHHHHHHHHTTEECBC
T ss_pred EEECCC----------CHHHHHHHHHHCCEEEEE
Confidence 887631 135688889999999865
No 74
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.94 E-value=1.5e-26 Score=234.41 Aligned_cols=307 Identities=12% Similarity=0.051 Sum_probs=206.0
Q ss_pred cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhC----CCC---CceEEEcCCH
Q 013235 96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----PGN---LKVVFFTNSG 167 (447)
Q Consensus 96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~----~~~---~~~v~~~~sG 167 (447)
..|+++|||.+|.. .+| .+|.|.+|+.++++... ...|.. ....+++++|++++ +.+ .+.|++++||
T Consensus 44 ~~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~ 118 (404)
T 2o1b_A 44 HGPLPLINMAVGIP--DGP-TPQGIIDHFQKALTIPE--NQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGT 118 (404)
T ss_dssp CCSSCCEECCCCSC--SSC-CCHHHHHHHHHHTTCHH--HHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSH
T ss_pred cCCCCEEecCCcCC--CCC-CCHHHHHHHHHHHhCCC--CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCc
Confidence 35788999999887 567 68999999999885421 112332 23455666666554 533 2679999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235 168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247 (447)
Q Consensus 168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i 247 (447)
++|++.+++... .+++.|++.+++||+....+...+. .+..++... ..|..| .++|++.+
T Consensus 119 ~~al~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~g~-----------~~~~v~~~~---~~~~~d----~~~l~~~l 178 (404)
T 2o1b_A 119 KNGLVAVPTCVI--NPGDYVLLPDPGYTDYLAGVLLADG-----------KPVPLNLEP---PHYLPD----WSKVDSQI 178 (404)
T ss_dssp HHHHHHHHHHHC--CTTCEEEEEESCCSSHHHHHHHTTC-----------EEEEEECCT---TTCCCC----GGGSCHHH
T ss_pred HHHHHHHHHHhc--CCCCEEEEcCCCchhHHHHHHHCCC-----------EEEEeccCc---ccCcCC----HHHHHHhh
Confidence 999999998763 2457899999999997765543211 122222211 122234 34555555
Q ss_pred HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC--Cccccc-ccCCCCCEEEeec
Q 013235 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS--HFWGFE-AHGVVPDIVTMAK 324 (447)
Q Consensus 248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~--~~~~~~-~~gv~pDivt~sK 324 (447)
.. ++++|+++..++++|.+. |.+++++|.++|++||+++|+||+|++|.++|. .++.+. ..+....+.+++|
T Consensus 179 ~~----~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK 253 (404)
T 2o1b_A 179 ID----KTKLIYLTYPNNPTGSTA-TKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSK 253 (404)
T ss_dssp HH----HEEEEEECSSCTTTCCCC-CHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTT
T ss_pred cc----CceEEEEcCCCCCCCccC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecch
Confidence 42 567777775577788765 788999999999999999999999999877662 122221 1233345668999
Q ss_pred ccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 013235 325 GIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGII 401 (447)
Q Consensus 325 ~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i 401 (447)
.++ +|+|+|++++++++++.+.......+++.|+++++++.++|+..++ ++..++++++.+++.+.|+++ + +
T Consensus 254 ~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~ 328 (404)
T 2o1b_A 254 GYNMSGFRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA----D-L 328 (404)
T ss_dssp TTTCGGGCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT----T-C
T ss_pred hccCchhheEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc----C-C
Confidence 998 7999999999999998887544556788999999999999875311 223444555555565555553 3 2
Q ss_pred eeEee-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235 402 GDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS 445 (447)
Q Consensus 402 ~~vrg-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~ 445 (447)
.-+++ .|+++++++.+.. ...++.+.|+ ++||++.+
T Consensus 329 ~~~~~~~g~~~~~~~~~~~--------~~~~l~~~l~~~~gi~v~~ 366 (404)
T 2o1b_A 329 PFVHAKGGIYVWLETPPGY--------DSEQFEQFLVQEKSILVAP 366 (404)
T ss_dssp CEECCCBSSEEEEECCTTC--------CHHHHHHHHHHHHCEECEE
T ss_pred eecCCCcceEEEEeCCCCC--------CHHHHHHHHHHHCCEEEeC
Confidence 22344 3667888874210 1356888887 57999874
No 75
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.94 E-value=3.9e-26 Score=229.45 Aligned_cols=305 Identities=13% Similarity=0.115 Sum_probs=204.4
Q ss_pred eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHh----CC--CCCc-eEEEcCCHHHHH
Q 013235 100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASK----MP--GNLK-VVFFTNSGTEAN 171 (447)
Q Consensus 100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~----~~--~~~~-~v~~~~sGseA~ 171 (447)
.+|||.+|.. .++ .+|.+.+|+.++++... ..|.. ....+++++|+++ ++ .+.+ +|++++||++|+
T Consensus 31 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~---~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~ 104 (386)
T 1u08_A 31 QAINLSQGFP--DFD-GPRYLQERLAHHVAQGA---NQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEAL 104 (386)
T ss_dssp TCEECCCSSC--SSC-CCHHHHHHHHHHHHTTC---CSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHH
T ss_pred CeEEecCCCC--CCC-CCHHHHHHHHHHHHhhc---cCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHH
Confidence 4789988776 466 78999999999987621 12222 1234455555554 33 3456 899999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235 172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT 251 (447)
Q Consensus 172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~ 251 (447)
+.+++... .++++|++.+++||+....+... +. .+..++... . .|+.| .++|++.+.
T Consensus 105 ~~~~~~~~--~~gd~vl~~~p~~~~~~~~~~~~-g~----------~~~~v~~~~--~-~~~~d----~~~l~~~l~--- 161 (386)
T 1u08_A 105 YAAITALV--RNGDEVICFDPSYDSYAPAIALS-GG----------IVKRMALQP--P-HFRVD----WQEFAALLS--- 161 (386)
T ss_dssp HHHHHHHC--CTTCEEEEEESCCTTHHHHHHHT-TC----------EEEEEECCT--T-TCCCC----HHHHHHHCC---
T ss_pred HHHHHHhC--CCCCEEEEeCCCchhHHHHHHHc-CC----------EEEEeecCc--c-cCcCC----HHHHHHhhc---
Confidence 99998763 35678999999999866543222 11 122222211 0 23345 567777663
Q ss_pred CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCC---ccccc-ccCCCCCEEEeecccc
Q 013235 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH---FWGFE-AHGVVPDIVTMAKGIG 327 (447)
Q Consensus 252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~---~~~~~-~~gv~pDivt~sK~lg 327 (447)
+++++|+++..++++|.+. |.+++++|.++|++||+++|+||+|++|.+.|.. ++.++ .++..+.+.+++|.++
T Consensus 162 -~~~~~v~l~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~ 239 (386)
T 1u08_A 162 -ERTRLVILNTPHNPSATVW-QQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYH 239 (386)
T ss_dssp -TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTT
T ss_pred -ccCEEEEEeCCCCCCCccC-CHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcC
Confidence 3677888887788888775 6789999999999999999999999998776631 22222 2455556678999999
Q ss_pred -CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE
Q 013235 328 -NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404 (447)
Q Consensus 328 -~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v 404 (447)
+|+|+|++++++++++.+....+..+|+.|+++++++.++|+..++ +++.++++++.+++.+.|++ +++....
T Consensus 240 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~ 315 (386)
T 1u08_A 240 MTGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNE----SRLEILP 315 (386)
T ss_dssp CGGGCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTS----SSCEECC
T ss_pred CcccceEEEEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH----CCCeecC
Confidence 7999999999999998887544556888999999999888875421 23344445555555554443 3322112
Q ss_pred eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235 405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS 445 (447)
Q Consensus 405 rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~ 445 (447)
...|+++++++.... . ....++.+.|+ ++||++.+
T Consensus 316 ~~~g~~~~~~~~~~~--~----~~~~~~~~~l~~~~gi~v~~ 351 (386)
T 1u08_A 316 CEGTYFLLVDYSAVS--T----LDDVEFCQWLTQEHGVAAIP 351 (386)
T ss_dssp CCBSSEEEEECTTTC--C----SCHHHHHHHHHHHSCEECEE
T ss_pred CCceEEEEEecCCCC--C----CCHHHHHHHHHHhCCEEEeC
Confidence 234788888873210 0 01356778776 68999864
No 76
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.94 E-value=1.4e-26 Score=232.23 Aligned_cols=297 Identities=15% Similarity=0.140 Sum_probs=211.5
Q ss_pred EEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccch-HHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHH
Q 013235 101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR 179 (447)
Q Consensus 101 ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~-~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar 179 (447)
+|||.+|.. .++ .+|.+.+++.++++.. ..|... ...+++++|+++++.+.+++++++||++|++.+++.+.
T Consensus 27 ~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~ 99 (381)
T 1v2d_A 27 AVNLGQGFP--SNP-PPPFLLEAVRRALGRQ----DQYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV 99 (381)
T ss_dssp CEECCCCSC--SSC-CCHHHHHHHHHHTTTS----CSCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC
T ss_pred eEEecCCCC--CCC-CCHHHHHHHHHHHHHh----cCCCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC
Confidence 789988876 456 7899999999988762 234433 46789999999987666789999999999999998763
Q ss_pred hhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEE
Q 013235 180 LYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFL 259 (447)
Q Consensus 180 ~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi 259 (447)
.++++|++.+++||+....+... +. .+..++.+. +...+..| .++|++.+. .++++|+
T Consensus 100 --~~gd~Vl~~~~~~~~~~~~~~~~-g~----------~~~~v~~~~-~~~~~~~d----~~~l~~~l~----~~~~~v~ 157 (381)
T 1v2d_A 100 --GPGDEVVVLEPFFDVYLPDAFLA-GA----------KARLVRLDL-TPEGFRLD----LSALEKALT----PRTRALL 157 (381)
T ss_dssp --CTTCEEEEEESCCTTHHHHHHHT-TC----------EEEEEECEE-ETTEEECC----HHHHHTTCC----TTEEEEE
T ss_pred --CCCCEEEEcCCCchhHHHHHHHc-CC----------EEEEEeCCC-CCccCCcC----HHHHHHhcC----cCCEEEE
Confidence 36688999999999876543221 11 122232210 00012234 556665553 3678888
Q ss_pred EccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC---CcccccccCCCCCEEEeecccc-CCcccccc
Q 013235 260 SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS---HFWGFEAHGVVPDIVTMAKGIG-NGIPLGAV 335 (447)
Q Consensus 260 ~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~---~~~~~~~~gv~pDivt~sK~lg-~G~pigav 335 (447)
++..++++|.+. |++++++|.++|++||+++|+||+|++|.. |. .++.+ ..+..+++.+++|.++ +|+|+|++
T Consensus 158 ~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~-~~~~~~~~~s~sK~~~~~G~r~G~~ 234 (381)
T 1v2d_A 158 LNTPMNPTGLVF-GERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREF-APERTFTVGSAGKRLEATGYRVGWI 234 (381)
T ss_dssp EESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHH-CTTTEEEEEEHHHHTTCGGGCCEEE
T ss_pred ECCCCCCCCCcc-CHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHh-cCCCEEEEeechhhcCCcccceEEE
Confidence 888888888875 678999999999999999999999999854 42 22222 3566677778999998 79999999
Q ss_pred ccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh--h--hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeE
Q 013235 336 VTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--K--DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLL 411 (447)
Q Consensus 336 ~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~--~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~ 411 (447)
++++++++.+.......+|+.|+++++++.++|+... + +++.++++++.++|.+.|+++ .+.... ...|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~--~~~~~~~ 310 (381)
T 1v2d_A 235 VGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM--GLRVYV--PEGTYFL 310 (381)
T ss_dssp ECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT--TCCEEC--CSBSSEE
T ss_pred EeCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC--CCEecC--CCcceEE
Confidence 9999998887654455688899999999999998662 2 345666777777777777763 222211 2236788
Q ss_pred EEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 412 GVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 412 giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
++++.+. . +.+.|.++||++.+
T Consensus 311 ~~~~~~~-----------~-~~~~l~~~gi~v~~ 332 (381)
T 1v2d_A 311 MAELPGW-----------D-AFRLVEEARVALIP 332 (381)
T ss_dssp EEECTTC-----------C-HHHHHHHTCEECEE
T ss_pred EEecChH-----------h-HHHHHHhCCEEEec
Confidence 7776311 1 55667889999864
No 77
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.94 E-value=3.4e-26 Score=230.46 Aligned_cols=303 Identities=17% Similarity=0.173 Sum_probs=210.7
Q ss_pred CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhC----C--CCCceEEEcCCHHH
Q 013235 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P--GNLKVVFFTNSGTE 169 (447)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~----~--~~~~~v~~~~sGse 169 (447)
+|+.+|||.+|.. .+++ +|.+.+|+.++++... ..|.. ....++.+.|++++ + ...+++++++||++
T Consensus 39 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~---~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~ 112 (389)
T 1o4s_A 39 KGEDVINLTAGEP--DFPT-PEPVVEEAVRFLQKGE---VKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQ 112 (389)
T ss_dssp TTCCCEECCCSSC--SSCC-CHHHHHHHHHHHTTCC---CCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHH
T ss_pred cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHhcCC---CCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHH
Confidence 5788999998876 5674 7999999999987632 12322 22345555555543 3 24578999999999
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235 170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF 249 (447)
Q Consensus 170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~ 249 (447)
|++.+++.+. .++++|++.+++||+....+...+. .+..++.. ....|..| .++|++.+.
T Consensus 113 al~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~--~~~~~~~d----~~~l~~~l~- 172 (389)
T 1o4s_A 113 ALFNAFMALL--DPGDEVIVFSPVWVSYIPQIILAGG-----------TVNVVETF--MSKNFQPS----LEEVEGLLV- 172 (389)
T ss_dssp HHHHHHHHHC--CTTCEEEEEESCCTTHHHHHHHTTC-----------EEEEEECC--GGGTTCCC----HHHHHHTCC-
T ss_pred HHHHHHHHhC--CCCCEEEEcCCCchhHHHHHHHcCC-----------EEEEEecC--CccCCCCC----HHHHHHhcc-
Confidence 9999998763 3567899999999987654432211 12222221 11123334 566776654
Q ss_pred cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCC--CCC--EEEeecc
Q 013235 250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV--VPD--IVTMAKG 325 (447)
Q Consensus 250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv--~pD--ivt~sK~ 325 (447)
+ ++++|+++..++++|.+. |++++++|.++|++||+++|+||+|++|.+.| .......++. ..| +.+++|.
T Consensus 173 --~-~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~ 247 (389)
T 1o4s_A 173 --G-KTKAVLINSPNNPTGVVY-RREFLEGLVRLAKKRNFYIISDEVYDSLVYTD-EFTSILDVSEGFDRIVYINGFSKS 247 (389)
T ss_dssp --T-TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCSS-CCCCHHHHCSSSTTEEEEEESTTT
T ss_pred --c-CceEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCCHhhcCCCCCcEEEEeechhh
Confidence 2 567788877788888765 67899999999999999999999999988766 3333322221 224 4478999
Q ss_pred cc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE
Q 013235 326 IG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404 (447)
Q Consensus 326 lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v 404 (447)
++ +|+|+|++++++++++.+.......+++.|+++++++.++|+.. -+++.++++++.+++.+.|+++ .+..+.
T Consensus 248 ~~~~G~r~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~~-- 322 (389)
T 1o4s_A 248 HSMTGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKM--GVKFVE-- 322 (389)
T ss_dssp TTCGGGCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHT--TCCCCC--
T ss_pred cCCcccceEEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhc--CCeeec--
Confidence 98 79999999999999888765445567889999999888887532 3456778888888888888875 333321
Q ss_pred eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235 405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS 445 (447)
Q Consensus 405 rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~ 445 (447)
...|+++++++. . ...++.+.|+ ++||++.+
T Consensus 323 ~~~~~~~~~~~~-~---------~~~~l~~~l~~~~gi~v~~ 354 (389)
T 1o4s_A 323 PEGAFYLFFKVR-G---------DDVKFCERLLEEKKVALVP 354 (389)
T ss_dssp CSBSSEEEEECS-S---------CHHHHHHHHHHHHCEECEE
T ss_pred CCcceEEEEeCC-C---------CHHHHHHHHHHHCCEEEeC
Confidence 223667777763 0 1356888887 88999864
No 78
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.94 E-value=3.8e-26 Score=229.62 Aligned_cols=306 Identities=12% Similarity=0.106 Sum_probs=207.1
Q ss_pred CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhC----C--CCCce-EEEcCCHHHH
Q 013235 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P--GNLKV-VFFTNSGTEA 170 (447)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~----~--~~~~~-v~~~~sGseA 170 (447)
..+|||.+|.. .++ .+|++.+++.++++... ..|.. ....++.+.|++++ + .+.++ +++++||++|
T Consensus 26 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~---~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a 99 (389)
T 1gd9_A 26 KDVISLGIGEP--DFD-TPQHIKEYAKEALDKGL---THYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQA 99 (389)
T ss_dssp SSCEECCCCSC--SSC-CCHHHHHHHHHHHHTTC---CSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHH
T ss_pred cCeEecCCCCC--CCC-CCHHHHHHHHHHHhCCC---CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHH
Confidence 36799988875 466 68999999999987632 12222 12344555555443 4 34567 9999999999
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235 171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG 250 (447)
Q Consensus 171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~ 250 (447)
++.+++.+. .++++|++.+++||+....+...+. .+..++.. ....|..| .++|++.+..
T Consensus 100 ~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~--~~~~~~~d----~~~l~~~l~~- 159 (389)
T 1gd9_A 100 FLMGLSAFL--KDGEEVLIPTPAFVSYAPAVILAGG-----------KPVEVPTY--EEDEFRLN----VDELKKYVTD- 159 (389)
T ss_dssp HHHHHTTTC--CTTCEEEEEESCCTTHHHHHHHHTC-----------EEEEEECC--GGGTTCCC----HHHHHHHCCT-
T ss_pred HHHHHHHhC--CCCCEEEEcCCCchhHHHHHHHCCC-----------EEEEeccC--CccCCCCC----HHHHHHhcCc-
Confidence 999998652 3567899999999987654432211 12223221 11123234 5677776642
Q ss_pred CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc-CC-CCCEE--Eeeccc
Q 013235 251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH-GV-VPDIV--TMAKGI 326 (447)
Q Consensus 251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~-gv-~pDiv--t~sK~l 326 (447)
++++|+++..++++|.+. |++.+++|.++|++||+++|+||+|++|.+.|.....+..+ +. ..|++ +++|.+
T Consensus 160 ---~~~~v~~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 235 (389)
T 1gd9_A 160 ---KTRALIINSPCNPTGAVL-TKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTF 235 (389)
T ss_dssp ---TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTT
T ss_pred ---CceEEEEECCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhc
Confidence 567777777788888764 67899999999999999999999999998776323333332 21 23544 689999
Q ss_pred c-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 013235 327 G-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK----DKLQNNAHVVGSYLKERLTALKDKYGII 401 (447)
Q Consensus 327 g-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~----~~l~~~~~~~g~~l~~~L~~l~~~~~~i 401 (447)
+ +|+|+|++++++++++.+.......+++.|+++++++.++|+..++ +++.++++++.+++.+.|+++ .+..+
T Consensus 236 ~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~ 313 (389)
T 1gd9_A 236 AMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM--GLPTV 313 (389)
T ss_dssp TCGGGCCEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCCC
T ss_pred CCcccceEEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc--CCeec
Confidence 8 7999999999999998887555556788999999999999875443 234455666666676666654 23222
Q ss_pred eeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235 402 GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS 445 (447)
Q Consensus 402 ~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~ 445 (447)
.+..|+++++++.... ....++.+.|+ ++||++.+
T Consensus 314 --~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~ 349 (389)
T 1gd9_A 314 --KPKGAFYIFPRIRDTG-------LTSKKFSELMLKEARVAVVP 349 (389)
T ss_dssp --CCCBTTEECCBCGGGT-------CCHHHHHHHHHHHTCEECEE
T ss_pred --CCCeeeEEEEeccCCC-------CCHHHHHHHHHHhCCEEEeC
Confidence 1233666777763210 01357888898 89999864
No 79
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.94 E-value=6.4e-26 Score=227.86 Aligned_cols=311 Identities=11% Similarity=0.050 Sum_probs=208.2
Q ss_pred CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc--cccccccchHHHHHHHHHHHhCC--CCCceEEEcCCHHHHHH
Q 013235 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEANE 172 (447)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~--~~~~~~~~~~~~elae~L~~~~~--~~~~~v~~~~sGseA~e 172 (447)
+|+.+|||.+|.. .++ .+|.+.+|+.++++... +.......+...++++.+.+..+ .+.++|++++||++|++
T Consensus 28 ~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 104 (388)
T 1j32_A 28 EGIDVCSFSAGEP--DFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF 104 (388)
T ss_dssp TTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEECCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHH
Confidence 6889999998876 566 68999999999886531 11111122333444444443322 34578999999999999
Q ss_pred HHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCC
Q 013235 173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS 252 (447)
Q Consensus 173 ~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~ 252 (447)
.+++.+. .++++|++.+++||+....+... |...+..|......|..| .++|++.+. +
T Consensus 105 ~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~l~---~ 162 (388)
T 1j32_A 105 NLMLAMI--EPGDEVIIPAPFWVSYPEMVKLA-------------EGTPVILPTTVETQFKVS----PEQIRQAIT---P 162 (388)
T ss_dssp HHHHHHC--CTTCEEEEESSCCTHHHHHHHHT-------------TCEEEEECCCGGGTTCCC----HHHHHHHCC---T
T ss_pred HHHHHhc--CCCCEEEEcCCCChhHHHHHHHc-------------CCEEEEecCCcccCCCCC----HHHHHHhcC---c
Confidence 9999763 35678999999999866543321 222222222111123334 567777664 2
Q ss_pred CCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCC---cccccc--cCCCCCEEEeecccc
Q 013235 253 GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH---FWGFEA--HGVVPDIVTMAKGIG 327 (447)
Q Consensus 253 ~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~---~~~~~~--~gv~pDivt~sK~lg 327 (447)
++++|++++.++++|.+. |++.+++|.++|++||+++|+||+|++|.+.|.. ++.+.. ++..+++.+++|.++
T Consensus 163 -~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~ 240 (388)
T 1j32_A 163 -KTKLLVFNTPSNPTGMVY-TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYA 240 (388)
T ss_dssp -TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTT
T ss_pred -CceEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccC
Confidence 577888887788888875 6789999999999999999999999999876632 222221 445566778999998
Q ss_pred -CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE
Q 013235 328 -NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404 (447)
Q Consensus 328 -~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v 404 (447)
+|+|+|++++++++++.+.......+++.++++++++.++|+..++ +++.++++++.+++.+.|+++ +.+.-+
T Consensus 241 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~ 316 (388)
T 1j32_A 241 MTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM----PGLECP 316 (388)
T ss_dssp CTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC----TTCBCC
T ss_pred CcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhC----CCCccc
Confidence 7999999999999988876544557888999999999988874321 234556666666776666553 222222
Q ss_pred ee-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh-CCceeec
Q 013235 405 RG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKG-ICALFFS 445 (447)
Q Consensus 405 rg-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~ 445 (447)
.. .|+++++++.... ....++.+.|++ +||++.+
T Consensus 317 ~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~ 352 (388)
T 1j32_A 317 KPDGAFYMFPSIAKTG-------RSSLDFCSELLDQHQVATVP 352 (388)
T ss_dssp CCCBTTEECCBCGGGT-------CCHHHHHHHHHHHHCEECEE
T ss_pred CCCeeEEEEEecCCCC-------CCHHHHHHHHHHhCCEEEeC
Confidence 23 3555555552100 013568888886 7999864
No 80
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.94 E-value=4.5e-26 Score=231.18 Aligned_cols=310 Identities=13% Similarity=0.060 Sum_probs=206.3
Q ss_pred eEEEecCCcccccCCCCCHHHHHHHHHHHHhc--ccccccccchHHHHHHHHHHHhCC--CCCc-eEEEcCCHHHHHHHH
Q 013235 100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI--QHSTVLYLNHAIADFAEALASKMP--GNLK-VVFFTNSGTEANELA 174 (447)
Q Consensus 100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~--~~~~~~~~~~~~~elae~L~~~~~--~~~~-~v~~~~sGseA~e~A 174 (447)
.+|||.+|.. .++ .+|.+.+|+.++++.. .+....+..+...++++.+.+.++ .+.+ +|++++||++|++.+
T Consensus 26 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~ 102 (411)
T 2o0r_A 26 GAVNLGQGFP--DED-GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAA 102 (411)
T ss_dssp TCEESSCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHH
T ss_pred CeeeccCcCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHH
Confidence 3789988875 466 6899999999999762 111111112333344444443323 3355 899999999999999
Q ss_pred HHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCC
Q 013235 175 IMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH 254 (447)
Q Consensus 175 ik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~ 254 (447)
++.+. .++++|++.+++||+....+... +. .+..++.... ...|..| .++|++.+. .+
T Consensus 103 ~~~~~--~~gd~Vl~~~~~y~~~~~~~~~~-g~----------~~~~v~~~~~-~~~~~~d----~~~l~~~l~----~~ 160 (411)
T 2o0r_A 103 VLGLV--EPGSEVLLIEPFYDSYSPVVAMA-GA----------HRVTVPLVPD-GRGFALD----ADALRRAVT----PR 160 (411)
T ss_dssp HHHHC--CTTCEEEEEESCCTTHHHHHHHT-TC----------EEEEEECEEE-TTEEECC----HHHHHHHCC----TT
T ss_pred HHHhc--CCCCEEEEeCCCcHhHHHHHHHc-CC----------EEEEeecccc-ccCCCCC----HHHHHHhhc----cC
Confidence 98763 35688999999999865543322 11 1122221100 0012234 567777664 26
Q ss_pred eEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccc----cCCCCCEEEeecccc-CC
Q 013235 255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEA----HGVVPDIVTMAKGIG-NG 329 (447)
Q Consensus 255 ~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~----~gv~pDivt~sK~lg-~G 329 (447)
+++|+++..++++|.+. +.+++++|.++|++||+++|+||+|++|+++|.....+.. .+....+.+++|.++ +|
T Consensus 161 ~~~v~l~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 239 (411)
T 2o0r_A 161 TRALIINSPHNPTGAVL-SATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTG 239 (411)
T ss_dssp EEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTT
T ss_pred ceEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCcc
Confidence 77888888888889775 6789999999999999999999999999887732222222 233344557899998 79
Q ss_pred ccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeec
Q 013235 330 IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR 407 (447)
Q Consensus 330 ~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~ 407 (447)
+|+|++++++++++.+.......+|+.|+++++++.++|+..++ +++.++++++.+++.+.|+++ ++....+..
T Consensus 240 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~ 315 (411)
T 2o0r_A 240 WKIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI----GFAVHDSYG 315 (411)
T ss_dssp TCEEEEECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH----TCEECCCCB
T ss_pred ceEEEEeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc----CCEecCCCe
Confidence 99999999999998876544556788899999999999975422 245566666777777777664 221112344
Q ss_pred ceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235 408 GFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS 445 (447)
Q Consensus 408 Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~ 445 (447)
|+++++++..... . ...++.+.|+ ++||++.+
T Consensus 316 g~~~~~~~~~~~~---~---~~~~~~~~l~~~~gi~v~~ 348 (411)
T 2o0r_A 316 TYFLCADPRPLGY---D---DSTEFCAALPEKVGVAAIP 348 (411)
T ss_dssp SSEEEEECGGGTC---C---CHHHHHHHHHHHHSEECEE
T ss_pred eEEEEEecCCCCC---C---CHHHHHHHHHHhCCEEEcC
Confidence 7788888843100 0 1356778776 67999864
No 81
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.94 E-value=7.1e-26 Score=225.53 Aligned_cols=297 Identities=14% Similarity=0.097 Sum_probs=206.1
Q ss_pred cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHH
Q 013235 96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAI 175 (447)
Q Consensus 96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Ai 175 (447)
.+|+.+|||.+|.. +++ .+|+|.+|+.++++...+....|+++...+++++|+++++.+.++|++++||++|++.++
T Consensus 23 ~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~ 99 (360)
T 3hdo_A 23 PDIASWIKLNTNEN--PYP-PSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLI 99 (360)
T ss_dssp SCCTTSEECSSCCC--SSC-CCHHHHHHHHHHHTTTCGGGGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred ccccceeeccCCCC--CCC-CCHHHHHHHHHHHhcccchhhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHH
Confidence 57789999998876 455 789999999999887422223455555678999999998766788999999999999999
Q ss_pred HHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCe
Q 013235 176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV 255 (447)
Q Consensus 176 k~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~ 255 (447)
+... ..+++|++.+++|++....+...+. .+..++..+. +. + +++++... .
T Consensus 100 ~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~~~----~~------~---~~l~~~~~---~ 150 (360)
T 3hdo_A 100 RAFA--AEGEEIGYVHPSYSYYGTLAEVQGA-----------RVRTFGLTGD----FR------I---AGFPERYE---G 150 (360)
T ss_dssp HHHC--CTTCEEEEESSSCTHHHHHHHHHTC-----------EEEEECBCTT----SS------B---TTCCSSBC---S
T ss_pred HHHh--CCCCEEEEcCCChHHHHHHHHHCCC-----------EEEEeeCCCC----CC------H---HHHHhhcC---C
Confidence 8653 2558899999999987655443321 1222222111 11 1 11222121 2
Q ss_pred EEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeecccc-CCccccc
Q 013235 256 AGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGA 334 (447)
Q Consensus 256 aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg-~G~piga 334 (447)
.+++++..++++|.+.+ ++++.++|+++|+++|+||+|++|+..+ .....+..+....+.+++|.++ +|+++|+
T Consensus 151 ~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~ 225 (360)
T 3hdo_A 151 KVFFLTTPNAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESN-ALELVRRHENVVVTRTLSKSYSLAGMRIGL 225 (360)
T ss_dssp SEEEEESSCTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCC-CTHHHHHCSSEEEEEESTTTTSCTTSCCEE
T ss_pred CEEEEeCCCCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcc-hhHHhccCCCEEEEecchHhhcCCccceee
Confidence 25555556788888887 7899999999999999999999885433 2222244444455668999998 7999999
Q ss_pred cccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEE
Q 013235 335 VVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ-KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGV 413 (447)
Q Consensus 335 v~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~-~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~gi 413 (447)
+++++++++.+... ..+|+.|+++++++.++|+..+ -++..++.+++.+++.+.|+++ + +..+++.|.++++
T Consensus 226 ~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-~~~~~~~~~~~~~ 298 (360)
T 3hdo_A 226 AIARPEVIAALDKI--RDHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI----G-YDVIPSQGNYLFA 298 (360)
T ss_dssp EECCHHHHHHHHHH--SCSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT----T-CEECCCSSSEEEE
T ss_pred EeeCHHHHHHHHHh--CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----C-CEEcCCCccEEEE
Confidence 99999999888643 2568899999999999997421 1233444555555555555543 3 3345778888887
Q ss_pred EEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 414 EFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 414 el~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
++... ...++.+.|.++||++.+
T Consensus 299 ~~~~~---------~~~~l~~~l~~~gi~v~~ 321 (360)
T 3hdo_A 299 TPPDR---------DGKRVYDGLYARKVLVRH 321 (360)
T ss_dssp ECTTC---------CHHHHHHHHHHTTEECBC
T ss_pred ECCCC---------CHHHHHHHHHHCCEEEEE
Confidence 65311 145788899999999864
No 82
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.94 E-value=1.2e-25 Score=228.47 Aligned_cols=321 Identities=12% Similarity=0.044 Sum_probs=207.4
Q ss_pred CeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccccccc-----chHHHHHHHHHHHhCC--CCC-ceEEEcCCHHHH
Q 013235 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-----NHAIADFAEALASKMP--GNL-KVVFFTNSGTEA 170 (447)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~-----~~~~~elae~L~~~~~--~~~-~~v~~~~sGseA 170 (447)
..+|||..|.. .++ .+|.|.+|+.+++.... ....|. .+...++++.+.+.++ ... ++|++++||++|
T Consensus 28 ~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~-~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a 103 (422)
T 3fvs_A 28 HDVVNLGQGFP--DFP-PPDFAVEAFQHAVSGDF-MLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGA 103 (422)
T ss_dssp SCCEECCCSSC--SSC-CCHHHHHHHHHHHHSCG-GGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHH
T ss_pred CCceEeCCCCC--CCC-CCHHHHHHHHHHHhCCC-ccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHH
Confidence 46789988875 444 78999999999987632 011222 2344455555554332 233 579999999999
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCC-----C---cCCCCCCChHHHHHH
Q 013235 171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPD-----P---YRGVFGADGEMYAKD 242 (447)
Q Consensus 171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~-----~---~~~~~~~d~~~~~~~ 242 (447)
++.+++.+. .+++.|++.+++||+....+...+. .+..++... . ....|..| .++
T Consensus 104 ~~~~~~~~~--~~gd~vl~~~p~~~~~~~~~~~~g~-----------~~~~~~~~~~~~~~G~~~~~~~~~~d----~~~ 166 (422)
T 3fvs_A 104 LFTAFQALV--DEGDEVIIIEPFFDCYEPMTMMAGG-----------RPVFVSLKPGPIQNGELGSSSNWQLD----PME 166 (422)
T ss_dssp HHHHHHHHC--CTTCEEEEEESCCTTHHHHHHHTTC-----------EEEEEECBCCCCCSSSCCBGGGSBCC----HHH
T ss_pred HHHHHHHHc--CCCCEEEEcCCCchhhHHHHHHcCC-----------EEEEEecccccccccccccccCCCCC----HHH
Confidence 999998763 3567899999999987654443221 111222110 0 00122234 456
Q ss_pred HHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc----CCCCC
Q 013235 243 VQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH----GVVPD 318 (447)
Q Consensus 243 le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~----gv~pD 318 (447)
+++.+. .++++|+++..++++|.+. +++.+++|.++|++||+++|+||+|++|.++|.....+..+ +...+
T Consensus 167 l~~~~~----~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~ 241 (422)
T 3fvs_A 167 LAGKFT----SRTKALVLNTPNNPLGKVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLT 241 (422)
T ss_dssp HHTTCC----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEE
T ss_pred HHhhcC----CCceEEEECCCCCCCCcCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEE
Confidence 665543 2677888888888899876 78889999999999999999999999998887433333332 22344
Q ss_pred EEEeecccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHHH
Q 013235 319 IVTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI-----QKDKLQNNAHVVGSYLKERLT 392 (447)
Q Consensus 319 ivt~sK~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i-----~~~~l~~~~~~~g~~l~~~L~ 392 (447)
+.+++|.+| +|+|+|++++++++++.+.......+|+.|+++++++.++|+.. ..++..++.++..+..++.|.
T Consensus 242 ~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 321 (422)
T 3fvs_A 242 IGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMI 321 (422)
T ss_dssp EEEHHHHHTCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred EecchhccCCccceEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHH
Confidence 557899998 79999999999999988865555678999999999999999751 122333344444444444444
Q ss_pred HHHHhcCCeeeEeecceeEEEEEeeCCCCCC--C---CHHHHHHHHHHHH-hCCceeec
Q 013235 393 ALKDKYGIIGDVRGRGFLLGVEFVTDRQLKT--P---AKAETLYIMDKMK-GICALFFS 445 (447)
Q Consensus 393 ~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~--p---~~~~~~~~~~~l~-~~Gvlv~~ 445 (447)
+..+++++....+..|+++++++........ + +.....++++.|+ ++||++.+
T Consensus 322 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~ 380 (422)
T 3fvs_A 322 RSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIP 380 (422)
T ss_dssp HHHHTTTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEE
T ss_pred HHHHHcCCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeC
Confidence 4444444433456678888888743100000 0 0001345677655 47998864
No 83
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.94 E-value=7.8e-26 Score=224.20 Aligned_cols=299 Identities=9% Similarity=0.017 Sum_probs=195.0
Q ss_pred EeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcC
Q 013235 86 VDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTN 165 (447)
Q Consensus 86 ~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~ 165 (447)
.+++|.+++|.+|+++|||.+|.. +++ .+|+|.+|+.+++... ..|+++...+++++|+++++.+.+++++++
T Consensus 2 ~~~~g~~~~~~~g~~~id~~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~i~~t~ 74 (350)
T 3fkd_A 2 IFGHGDEGITPLSSEIVNFSTTVW--TDG-DKDHLEKHLVENLNCI----RHYPEPDAGTLRQMLAKRNSVDNNAILVTN 74 (350)
T ss_dssp --------------CCEECSCCSC--CCS-CCHHHHHHHHHTGGGG----GSCCCTTCHHHHHHHHHHTTCCGGGEEEES
T ss_pred cccccchHhhhccccEEEccCCCC--CCC-CCHHHHHHHHHhHhHH----hcCCCCcHHHHHHHHHHHhCcCHHHEEEcC
Confidence 468999999999999999999875 556 7899999999887433 234544447899999999977678899999
Q ss_pred CHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHH
Q 013235 166 SGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD 245 (447)
Q Consensus 166 sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~ 245 (447)
||++|++.+++... ++.|++..++|++....+...+. .+..++.. .....+ +
T Consensus 75 g~~~al~~~~~~l~----gd~Vi~~~p~~~~~~~~~~~~g~-----------~~~~v~~~-~~~~~~--~---------- 126 (350)
T 3fkd_A 75 GPTAAFYQIAQAFR----GSRSLIAIPSFAEYEDACRMYEH-----------EVCFYPSN-EDIGEA--D---------- 126 (350)
T ss_dssp HHHHHHHHHHHHTT----TCEEEEEESCCHHHHHHHHHTTC-----------EEEEEETT-SCGGGS--C----------
T ss_pred CHHHHHHHHHHHHC----CCEEEEeCCCcHHHHHHHHHcCC-----------eEEEEecC-CccccC--c----------
Confidence 99999999998665 68899999999987654433211 12222220 100011 0
Q ss_pred HHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC-CEEEEeccccCccccCCCc-ccccccCCCCCEEEee
Q 013235 246 LIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG-GLCIADEVQAGFARTGSHF-WGFEAHGVVPDIVTMA 323 (447)
Q Consensus 246 ~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g-~llI~DEv~tGfgr~G~~~-~~~~~~gv~pDivt~s 323 (447)
..++.+++++..++++|.+.+ .+++.++++.++ .++|+||+|++|++.+... ...+.++....+.+++
T Consensus 127 ------~~~~~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~s 196 (350)
T 3fkd_A 127 ------FSNMDFCWLCNPNNPDGRLLQ----RTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFS 196 (350)
T ss_dssp ------CTTCSEEEEESSCTTTCCCCC----HHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESH
T ss_pred ------cCCCCEEEEeCCCCCcCCCCC----HHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCc
Confidence 124556666666788888775 455555555554 5999999999998776311 1112223323344789
Q ss_pred cccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013235 324 KGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--KDKLQNNAHVVGSYLKERLTALKDKYGI 400 (447)
Q Consensus 324 K~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~--~~~l~~~~~~~g~~l~~~L~~l~~~~~~ 400 (447)
|.++ .|+++|++++++++++.+.... .+++.|+++++++.++|+..+ .+.+.+.. ++.+++.+.|++ ++.
T Consensus 197 K~~~~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~L~~----~~~ 269 (350)
T 3fkd_A 197 HAYGIPGLRIGYIVANKDFMKRVAAFS--TPWAVNALAIEAAKFILIHPAQFTLPIRKWQ-RNTVDFITALNR----LDG 269 (350)
T ss_dssp HHHSCGGGCCEEEECCHHHHHHHHTTC--CTTCSCHHHHHHHHHHHHCTTTTCCCHHHHH-HHHHHHHHHHHH----STT
T ss_pred hhccCcchheEeEEeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHH-HHHHHHHHHHhc----CCC
Confidence 9999 8999999999999999887543 567889999999999987543 12233322 445555555543 444
Q ss_pred eeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh-CCceeec
Q 013235 401 IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKG-ICALFFS 445 (447)
Q Consensus 401 i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~ 445 (447)
+...++.|.++.+.+... ...++.+.|++ +||++.+
T Consensus 270 ~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~~~~gi~v~~ 306 (350)
T 3fkd_A 270 VEVHPSGTTFFLLRLKKG---------TAAELKKYMLEEYNMLIRD 306 (350)
T ss_dssp EEECCCSSSEEEEEESSS---------CHHHHHHHHHHTTCEECEE
T ss_pred cEECCCCCcEEEEECCCC---------CHHHHHHHHHHHCCEEEEe
Confidence 555677888888887431 14678899998 9999874
No 84
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.94 E-value=1.6e-25 Score=223.62 Aligned_cols=292 Identities=10% Similarity=0.084 Sum_probs=204.2
Q ss_pred CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhC----C--CCCceEEEcCCHHH
Q 013235 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM----P--GNLKVVFFTNSGTE 169 (447)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~----~--~~~~~v~~~~sGse 169 (447)
+|+.+|||.+|.. .+|+ +|.+.+++.++++... ..|.. ....++++.|++++ + .+.++|++++||++
T Consensus 27 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~---~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~ 100 (370)
T 2z61_A 27 EGKKVIHLEIGEP--DFNT-PKPIVDEGIKSLKEGK---THYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSL 100 (370)
T ss_dssp TTCCCEECCCCSC--SSCC-CHHHHHHHHHHHHTTC---CSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHH
T ss_pred cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHHcCc---cCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHH
Confidence 4788999998876 5676 7999999999987632 12221 12344455554443 2 34578999999999
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235 170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF 249 (447)
Q Consensus 170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~ 249 (447)
|++.+++.+. .++++|++.+++||+....+... |...+..| .| .++|++.+..
T Consensus 101 a~~~~~~~~~--~~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~--------~d----~~~l~~~l~~ 153 (370)
T 2z61_A 101 GLFFALSSII--DDGDEVLIQNPCYPCYKNFIRFL-------------GAKPVFCD--------FT----VESLEEALSD 153 (370)
T ss_dssp HHHHHHHHHC--CTTCEEEEESSCCTHHHHHHHHT-------------TCEEEEEC--------SS----HHHHHHHCCS
T ss_pred HHHHHHHHhc--CCCCEEEEeCCCchhHHHHHHHc-------------CCEEEEeC--------CC----HHHHHHhccc
Confidence 9999999763 35578999999999876654332 22222222 12 5677776642
Q ss_pred cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc-CCC-CCE--EEeecc
Q 013235 250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH-GVV-PDI--VTMAKG 325 (447)
Q Consensus 250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~-gv~-pDi--vt~sK~ 325 (447)
++++|+++..++++|.+.+ ++ |.++|++||+++|+||+|++|.+.| ....+..+ +.. .|+ .+++|.
T Consensus 154 ----~~~~v~~~~p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~ 223 (370)
T 2z61_A 154 ----KTKAIIINSPSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEG-KCYSAIEFDENLEKTILINGFSKL 223 (370)
T ss_dssp ----SEEEEEEESSCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSS-CCCCGGGTCTTCSSEEEEEESTTT
T ss_pred ----CceEEEEcCCCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCC-CCcCHHHccCCCCcEEEEecChhc
Confidence 5677788777888898876 44 9999999999999999999988777 34333333 121 243 468999
Q ss_pred cc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHH-Hhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 013235 326 IG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV-IQK--DKLQNNAHVVGSYLKERLTALKDKYGII 401 (447)
Q Consensus 326 lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~-i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i 401 (447)
++ +|+|+|++++++++++.+....+..+++.|+++++++.++|+. .++ +++.++++++.+++.+.|+++ .+..+
T Consensus 224 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~ 301 (370)
T 2z61_A 224 YAMTGWRIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF--GWEVN 301 (370)
T ss_dssp TTCGGGCCEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCBCC
T ss_pred cCCccceEEEEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc--CCeec
Confidence 98 7999999999999998887655556788999999999988875 221 345666777777777777765 22221
Q ss_pred eeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235 402 GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS 445 (447)
Q Consensus 402 ~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~ 445 (447)
. ...|+++++++.. ...++.+.|+ ++||++.+
T Consensus 302 ~--~~~~~~~~~~~~~----------~~~~~~~~l~~~~gi~v~~ 334 (370)
T 2z61_A 302 N--PIGAYYVFPNIGE----------DGREFAYKLLKEKFVALTP 334 (370)
T ss_dssp C--CCBTTEECCBCSS----------CHHHHHHHHHHHHCEECEE
T ss_pred C--CCcceEEEEecCC----------CHHHHHHHHHHhCCEEEeC
Confidence 1 2336777776632 1356888887 78999864
No 85
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.94 E-value=8.1e-26 Score=228.61 Aligned_cols=320 Identities=12% Similarity=0.041 Sum_probs=206.6
Q ss_pred CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccch-HHHHHHHHHHHhC----C--CCC-ceEEEcCCHHHH
Q 013235 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKM----P--GNL-KVVFFTNSGTEA 170 (447)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~-~~~elae~L~~~~----~--~~~-~~v~~~~sGseA 170 (447)
..+|||..|.. .++ .+|.|.+|+.+++.... ...|... ...++++.|++++ + ... ++|++++||++|
T Consensus 23 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a 97 (410)
T 3e2y_A 23 PSVVNLGQGFP--DIS-PPSYVKEELSKAAFIDN--MNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGS 97 (410)
T ss_dssp TTSEECSSCCC--CSC-CCHHHHHHHHHHHTCGG--GGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred CCeEEecCCCC--CCC-CCHHHHHHHHHHHhCcc--ccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHH
Confidence 45788888764 344 68999999999987531 1122221 1334444444443 2 233 689999999999
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCC-------cCCCCCCChHHHHHHH
Q 013235 171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDP-------YRGVFGADGEMYAKDV 243 (447)
Q Consensus 171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~-------~~~~~~~d~~~~~~~l 243 (447)
++.+++.+. .+++.|++..++||+........+. .+..++.... ....|..| .+++
T Consensus 98 ~~~~~~~~~--~~gd~vl~~~p~~~~~~~~~~~~g~-----------~~~~~~~~~~~~~g~~~~~~~~~~d----~~~l 160 (410)
T 3e2y_A 98 LFNSIQGLV--DPGDEVIIMVPFYDCYEPMVRMAGA-----------VPVFIPLRSKPTDGMKWTSSDWTFD----PREL 160 (410)
T ss_dssp HHHHHHHHC--CTTCEEEEEESCCTTHHHHHHHTTC-----------EEEEEECEECCCCSSCCBGGGEECC----HHHH
T ss_pred HHHHHHHhc--CCCCEEEEeCCCchhhHHHHHHcCC-----------EEEEEeccccccccccccccCCcCC----HHHH
Confidence 999998763 3567899999999977654433221 1111211100 00112223 4566
Q ss_pred HHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccC----CCCCE
Q 013235 244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG----VVPDI 319 (447)
Q Consensus 244 e~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~g----v~pDi 319 (447)
++.+. .++++|+++..++++|.+. +++.+++|.++|++||+++|+||+|++|.++|.....+..+. ...++
T Consensus 161 ~~~~~----~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 235 (410)
T 3e2y_A 161 ESKFS----SKTKAIILNTPHNPLGKVY-TRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITI 235 (410)
T ss_dssp HTTCC----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEE
T ss_pred HhhcC----CCceEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEE
Confidence 65543 3678888888889999876 677899999999999999999999999988884333333332 22344
Q ss_pred EEeecccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHHHH
Q 013235 320 VTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI-----QKDKLQNNAHVVGSYLKERLTA 393 (447)
Q Consensus 320 vt~sK~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i-----~~~~l~~~~~~~g~~l~~~L~~ 393 (447)
.++||.+| +|+|+|++++++++++.+.......+++.|+++++++.++|+.. ..++..++..+..+..++.|.+
T Consensus 236 ~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 315 (410)
T 3e2y_A 236 GSAGKTFSVTGWKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVR 315 (410)
T ss_dssp EEHHHHSSCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred ecchhhcCCCCceEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 47899999 89999999999999988876556678999999999999998741 1133344444444444444444
Q ss_pred HHHhcCCeeeEeecceeEEEEEeeCCCCCCC---CHHHHHHHHHHH-HhCCceeec
Q 013235 394 LKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP---AKAETLYIMDKM-KGICALFFS 445 (447)
Q Consensus 394 l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p---~~~~~~~~~~~l-~~~Gvlv~~ 445 (447)
..+++++....+..|+++++++......... ......++++.+ .++||++.+
T Consensus 316 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~ 371 (410)
T 3e2y_A 316 LLNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIP 371 (410)
T ss_dssp HHHTTTCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEE
T ss_pred HHHHCCCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeC
Confidence 4444454444566788888888542211000 001123566655 467999864
No 86
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.94 E-value=7.9e-26 Score=230.77 Aligned_cols=323 Identities=9% Similarity=0.021 Sum_probs=220.2
Q ss_pred CeEEEeecccEEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccch-HHHHHHHHHHHhCC-----
Q 013235 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMP----- 155 (447)
Q Consensus 82 p~~~~~g~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~-~~~elae~L~~~~~----- 155 (447)
++....+....+++.+|+.+|||.+|.. +++ .+|+|.+|+.+++.... ...|... ...++++.|++++.
T Consensus 27 ~~~~~~~~~~~~~~~~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~la~~~~~~~g~ 101 (437)
T 3g0t_A 27 SIRDLVALVTNLEKATGTKFCRMEMGVP--GLP-APQIGIETEIQKLREGV--ASIYPNLDGLPELKQEASRFAKLFVNI 101 (437)
T ss_dssp CHHHHHHHHHHHHHHHTCCCEECCCCSC--CSC-CCHHHHHHHHHHHHHTG--GGSCCCTTCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhcCCCEEeccCcCC--CCC-CCHHHHHHHHHHHhCCc--CcCCCCCCChHHHHHHHHHHHHHhhCC
Confidence 3333344556667888999999999986 455 78999999999987521 1223322 23455555555543
Q ss_pred -CCCceEEEcCCHHHHHHHHHHHHHhhcCCC--eEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCC
Q 013235 156 -GNLKVVFFTNSGTEANELAIMMARLYTGCN--DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF 232 (447)
Q Consensus 156 -~~~~~v~~~~sGseA~e~Aik~ar~~t~~~--~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~ 232 (447)
...++|++++||++|++.+++......+++ +|++..++||+....+...+. .+..++.. ...|
T Consensus 102 ~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~---~~~~ 167 (437)
T 3g0t_A 102 DIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQ-----------KFESFDLF---EYRG 167 (437)
T ss_dssp CCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTC-----------CCEEEEGG---GGCT
T ss_pred CCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCC-----------EEEEEeec---CCCC
Confidence 346789999999999999998765213556 899999999987665544321 12222221 0111
Q ss_pred CCChHHHHHHHHHHHHccCCCCeEEE-EEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC-Cc---
Q 013235 233 GADGEMYAKDVQDLIDFGTSGHVAGF-LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HF--- 307 (447)
Q Consensus 233 ~~d~~~~~~~le~~i~~~~~~~~aav-i~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~-~~--- 307 (447)
..| .++|++.++. + ++.+| ++.| ++++|.+. +.+.+++|.++|++||+++|+||+|++|.+.+. ..
T Consensus 168 ~~d----~~~l~~~l~~--~-~~~~v~l~~p-~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~ 238 (437)
T 3g0t_A 168 EKL----REKLESYLQT--G-QFCSIIYSNP-NNPTWQCM-TDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGE 238 (437)
T ss_dssp THH----HHHHHHHHTT--T-CCCEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTS
T ss_pred ccC----HHHHHHHHhc--C-CceEEEEeCC-CCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccc
Confidence 112 5678877742 2 34444 5566 67778765 677799999999999999999999998766541 11
Q ss_pred ----ccccc-cCCCCCEEEeecccc-CCccccccccCHHHHH-h-----------------hcCCcccccCCCChHHHHH
Q 013235 308 ----WGFEA-HGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAE-V-----------------LTRRNYFNTFGGNPVCTAA 363 (447)
Q Consensus 308 ----~~~~~-~gv~pDivt~sK~lg-~G~pigav~~~~~i~~-~-----------------l~~~~~~~T~~~np~a~aa 363 (447)
..+.. .+....+.+++|.++ .|+++|++++++++++ . +.......+++.|++++++
T Consensus 239 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 318 (437)
T 3g0t_A 239 PLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWG 318 (437)
T ss_dssp SCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHH
T ss_pred cchhhccCCCCCcEEEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHH
Confidence 22221 333333457899999 8999999999999998 7 6554455688999999999
Q ss_pred HHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHHHHhcCCeee------Ee-ecceeEEEEEeeCCCCCCCCHHHHHH
Q 013235 364 GHAVLKVIQ-----KDKLQNNAHVVGSYLKERLTALKDKYGIIGD------VR-GRGFLLGVEFVTDRQLKTPAKAETLY 431 (447)
Q Consensus 364 ala~L~~i~-----~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~------vr-g~Gl~~giel~~~~~~~~p~~~~~~~ 431 (447)
+.++|+..+ -++..++++++.+++.+.|+++ ++... .+ ..|+++++++. . ....+
T Consensus 319 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~ 385 (437)
T 3g0t_A 319 MAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN----GFNIVYDKDGNEPLADGFYFTVGYK-G--------MDSSK 385 (437)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT----TEEESSCEETTEECCSSSEEEEEET-T--------CCHHH
T ss_pred HHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc----CCEEeccccCCCCCceeEEEEEecC-C--------CCHHH
Confidence 999998765 2456667777777777777665 22111 24 67888888884 1 01457
Q ss_pred HHHHHHhCCceeec
Q 013235 432 IMDKMKGICALFFS 445 (447)
Q Consensus 432 ~~~~l~~~Gvlv~~ 445 (447)
+.+.|+++||++.+
T Consensus 386 l~~~L~~~gi~v~~ 399 (437)
T 3g0t_A 386 LIEKFVRYGMCAIT 399 (437)
T ss_dssp HHHHHHHTTEECEE
T ss_pred HHHHHHHcCeEEee
Confidence 88999999999864
No 87
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.94 E-value=1.6e-26 Score=234.20 Aligned_cols=317 Identities=12% Similarity=0.018 Sum_probs=204.0
Q ss_pred CCCeEEEecCCcccccCCCC--CHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCCC------CCceEEE--cC
Q 013235 97 NGRRYLDAFGGIATVCCGHC--HPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPG------NLKVVFF--TN 165 (447)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~--~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~~------~~~~v~~--~~ 165 (447)
+|+.+|||..|....+.||. +|.|.+|+.+++..... ...| +.....+|+++|+++++. ..++|+| ++
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~ 106 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSL-NHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSL 106 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTC-CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEE
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhh-ccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECC
Confidence 36778999998864455554 48999999888732111 1223 344457788888887732 3478999 99
Q ss_pred CHHHHHHHHHHHHHhhcCC-----CeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHH
Q 013235 166 SGTEANELAIMMARLYTGC-----NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYA 240 (447)
Q Consensus 166 sGseA~e~Aik~ar~~t~~-----~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~ 240 (447)
||++|++.++++++...++ ++|++..++||+....+...+.. .+..++.. ....++.| .
T Consensus 107 gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~----------~~~~~~~~--~~~~~~~d----~ 170 (412)
T 1ajs_A 107 GGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFK----------DIRSYRYW--DTEKRGLD----L 170 (412)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCS----------CEEEEECE--ETTTTEEC----H
T ss_pred CcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCc----------eeEEEeee--cCCCCccC----H
Confidence 9999999999877655556 88999999999877655443211 02222220 00122234 5
Q ss_pred HHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccC--CCcccccccCCCCC
Q 013235 241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG--SHFWGFEAHGVVPD 318 (447)
Q Consensus 241 ~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G--~~~~~~~~~gv~pD 318 (447)
+++++.+....+ +..++++...++++|.+ ++.+++++|.++|++||+++|+||+|++|+++| ...+.+..+...+|
T Consensus 171 ~~l~~~l~~~~~-~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~ 248 (412)
T 1ajs_A 171 QGFLSDLENAPE-FSIFVLHACAHNPTGTD-PTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGF 248 (412)
T ss_dssp HHHHHHHHHSCT-TCEEEEESSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred HHHHHHHHhCCC-CcEEEEECCCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCC
Confidence 677777765333 34455444445555654 578999999999999999999999999998875 12334443322344
Q ss_pred ----EEEeeccccC-Ccccccccc---CHHHHHh----hcCCcccccCC-CChHHHHHHHHHHHHHh--------hhhHH
Q 013235 319 ----IVTMAKGIGN-GIPLGAVVT---TPEIAEV----LTRRNYFNTFG-GNPVCTAAGHAVLKVIQ--------KDKLQ 377 (447)
Q Consensus 319 ----ivt~sK~lg~-G~pigav~~---~~~i~~~----l~~~~~~~T~~-~np~a~aaala~L~~i~--------~~~l~ 377 (447)
+.+++|.+|. |+|+|++++ ++++++. +.. .+..+++ .|+++++++.++|+..+ -+++.
T Consensus 249 ~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 327 (412)
T 1ajs_A 249 ELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQK-IVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMA 327 (412)
T ss_dssp CEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHH-HHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHH-HHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHH
Confidence 4479999997 999999999 8874443 322 1335666 49999999999997542 13456
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 378 NNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 378 ~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
++++++.+++.+.|+++..........+..|+++++++ + ...+.+.+.++||++.+
T Consensus 328 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~l~~~gv~v~~ 383 (412)
T 1ajs_A 328 DRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGL--------N----PKQVEYLINQKHIYLLP 383 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCC--------C----HHHHHHHHHTTCEECCT
T ss_pred HHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCC--------C----HHHHHHHHHhCCEEecC
Confidence 66777777777777665200001111233456665543 1 23344556688999864
No 88
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.94 E-value=1.1e-25 Score=229.38 Aligned_cols=313 Identities=12% Similarity=0.050 Sum_probs=204.0
Q ss_pred eEEEecCCcccccCCCCCHHHHHHHHHHHH---------hcccccccccchH-HHHHHHHHHHhCC--------CCCceE
Q 013235 100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIK---------RIQHSTVLYLNHA-IADFAEALASKMP--------GNLKVV 161 (447)
Q Consensus 100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~---------~~~~~~~~~~~~~-~~elae~L~~~~~--------~~~~~v 161 (447)
.+|||.++.. +++ +|.+.+++.++.. .+. ....|+++. ..+|.+.|+++++ .+.+++
T Consensus 37 ~~i~l~~~~~--~~~--~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i 111 (428)
T 1iay_A 37 GVIQMGLAEN--QLC--LDLIEDWIKRNPKGSICSEGIKSFK-AIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERV 111 (428)
T ss_dssp SBEECSSCCC--CSS--HHHHHHHHHHCTTSSTTC----CHH-HHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSC
T ss_pred ceeeeccccc--hhh--HHHHHHHHHhccccccccccccccH-hhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhE
Confidence 5789987765 455 4788888875431 110 012344332 4566666666543 446789
Q ss_pred EEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHH
Q 013235 162 FFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK 241 (447)
Q Consensus 162 ~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~ 241 (447)
++++|++++++.+++.+.. +++.|++.+++||+......... |+..+..|......|+.| .+
T Consensus 112 ~~~~G~~~ai~~~~~~~~~--~gd~Vl~~~p~y~~~~~~~~~~~------------g~~~~~v~~~~~~~~~~d----~~ 173 (428)
T 1iay_A 112 VMAGGATGANETIIFCLAD--PGDAFLVPSPYYPAFNRDLRWRT------------GVQLIPIHCESSNNFKIT----SK 173 (428)
T ss_dssp EEEEHHHHHHHHHHHHHCC--TTCEEEEESSCCTTHHHHTTTTT------------CCEEEEECCCTTTTTCCC----HH
T ss_pred EEccChHHHHHHHHHHhCC--CCCeEEEccCCCcchHHHHHHhc------------CCEEEEeecCCccCCcCC----HH
Confidence 9999999999999987643 45789999999998654332221 222222222111223345 55
Q ss_pred HHHHHHHcc--CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc------
Q 013235 242 DVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH------ 313 (447)
Q Consensus 242 ~le~~i~~~--~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~------ 313 (447)
++++.++.. ...++++|+++..++++|.+. +++++++|.++|++||+++|+||+|++|++.|..+..+..+
T Consensus 174 ~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~ 252 (428)
T 1iay_A 174 AVKEAYENAQKSNIKVKGLILTNPSNPLGTTL-DKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEM 252 (428)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGG
T ss_pred HHHHHHHHHHhcCCceEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhcccccc
Confidence 666666431 122567666665567788765 78999999999999999999999999987766222122111
Q ss_pred -CCCCC----EEEeecccc-CCcccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh---h--hhHHHHHH
Q 013235 314 -GVVPD----IVTMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ---K--DKLQNNAH 381 (447)
Q Consensus 314 -gv~pD----ivt~sK~lg-~G~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~---~--~~l~~~~~ 381 (447)
++.+| +.+++|.+| +|+|+|++++ ++++++.+.. ...+++.|+++++++.++|+..+ + +++.++++
T Consensus 253 ~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 330 (428)
T 1iay_A 253 TYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARK--MSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLG 330 (428)
T ss_dssp TTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHH--HHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHH--HHhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 23478 457999998 8999999998 6888887753 23457789999999888886432 1 24556666
Q ss_pred HHHHHHHHHHHHHHHhcCCeeeEee-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235 382 VVGSYLKERLTALKDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS 445 (447)
Q Consensus 382 ~~g~~l~~~L~~l~~~~~~i~~vrg-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~ 445 (447)
+..++|.+.|+++ .+. -+++ .|+|+++++.... ..+......++.+.|+++ ||++.+
T Consensus 331 ~~~~~l~~~L~~~--g~~---~~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~gi~v~~ 389 (428)
T 1iay_A 331 KRHKHFTNGLEVV--GIK---CLKNNAGLFCWMDLRPLL--RESTFDSEMSLWRVIINDVKLNVSP 389 (428)
T ss_dssp HHHHHHHHHHHHT--TCC---BCCCSSSSEEEEECGGGC--SSSSHHHHHHHHHHHHHTSCEECEE
T ss_pred HHHHHHHHHHHhc--CCc---ccCCCeeEEEEEechhhc--CCCchhHHHHHHHHHHHhCCEEEeC
Confidence 6777777777665 222 2344 6889999884321 112222345788999886 999874
No 89
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.94 E-value=3.4e-24 Score=216.38 Aligned_cols=299 Identities=18% Similarity=0.184 Sum_probs=207.4
Q ss_pred CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccc----ccc-cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHH
Q 013235 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST----VLY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEAN 171 (447)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~----~~~-~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~ 171 (447)
||++|+||.++.+ ..+|+ +|+|.+|+.++++...... ..| ..+...+++++|+++++. .+.+ +.+||++++
T Consensus 44 ~g~~~i~~~~~~~-~~~~~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~~~i-~~~sG~~a~ 119 (401)
T 2bwn_A 44 GKQDITVWCGNDY-LGMGQ-HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK-EAAL-VFSSAYNAN 119 (401)
T ss_dssp CEEEEEECSCSCT-TSGGG-CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC-SEEE-EESCHHHHH
T ss_pred CCCcEEEeeCCCc-ccCCC-CHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC-CcEE-EECCcHHHH
Confidence 7899999987543 23453 7899999999998753211 112 356788999999999965 3445 458888899
Q ss_pred HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235 172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT 251 (447)
Q Consensus 172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~ 251 (447)
..++++.....+++.|++..+.|++.... ....+. .+..++. +| .+++++++....
T Consensus 120 ~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~-~~~~g~----------~~~~v~~---------~d----~~~le~~l~~~~ 175 (401)
T 2bwn_A 120 DATLSTLRVLFPGLIIYSDSLNHASMIEG-IKRNAG----------PKRIFRH---------ND----VAHLRELIAADD 175 (401)
T ss_dssp HHHHHHHHHHSTTCEEEEETTCCHHHHHH-HHHSCC----------CEEEECT---------TC----HHHHHHHHHHSC
T ss_pred HHHHHHHhcCCCCCEEEECchhhHHHHHH-HHHcCC----------eEEEEcC---------CC----HHHHHHHHHhhc
Confidence 99988643222446777777666544432 222111 1222221 13 567888887543
Q ss_pred CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc--CccccCCCcccccccCC--CCCEE--Eeecc
Q 013235 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA--GFARTGSHFWGFEAHGV--VPDIV--TMAKG 325 (447)
Q Consensus 252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t--Gfgr~G~~~~~~~~~gv--~pDiv--t~sK~ 325 (447)
++++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ .||++| ..+. ..+++ .+|++ ++||+
T Consensus 176 ~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g-~~~~-~~~~~~~~~~i~~~s~sK~ 249 (401)
T 2bwn_A 176 PAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRG-AGVA-ERDGLMHRIDIFNGTLAKA 249 (401)
T ss_dssp TTSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTS-CCHH-HHHTCGGGCSEEEEESSST
T ss_pred cCCceEEEEecCcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCC-ceee-eccCccccCcEEEeechhh
Confidence 346789999999999999876 9999999999999999999998 356666 3332 44444 34655 79999
Q ss_pred ccC-CccccccccCHHHHHhhcCC--cccccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcC
Q 013235 326 IGN-GIPLGAVVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYG 399 (447)
Q Consensus 326 lg~-G~pigav~~~~~i~~~l~~~--~~~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~ 399 (447)
++. | |++++++++++.+... .+..+.+.++++++++.++|+.+++. ++.++++++.+++.+.|+++ .+.
T Consensus 250 ~~~~G---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~ 324 (401)
T 2bwn_A 250 YGVFG---GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL--GMP 324 (401)
T ss_dssp TCSCC---EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH--TCC
T ss_pred ccCCC---CEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC--CCc
Confidence 983 4 7888899988877532 12223345788999999999988763 67888899999999999886 443
Q ss_pred CeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235 400 IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS 445 (447)
Q Consensus 400 ~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~ 445 (447)
.+ ...|.++++++. ......++.+.|+ ++||++.+
T Consensus 325 ~~---~~~~~~~~~~~~--------~~~~~~~~~~~L~~~~gi~v~~ 360 (401)
T 2bwn_A 325 II---DHGSHIVPVVIG--------DPVHTKAVSDMLLSDYGVYVQP 360 (401)
T ss_dssp BC---CCSSSCEEEECC--------CHHHHHHHHHHHHHHHCEECCE
T ss_pred cc---CCCCCeEEEEeC--------ChHHHHHHHHHHHhcCCEEEee
Confidence 33 224557888763 1233567888896 78999853
No 90
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.93 E-value=1e-25 Score=231.14 Aligned_cols=314 Identities=13% Similarity=0.095 Sum_probs=210.6
Q ss_pred ecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc--ccccccc-chHHHHHHHHHHHhC----CCCCceEEEcCCH
Q 013235 95 DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYL-NHAIADFAEALASKM----PGNLKVVFFTNSG 167 (447)
Q Consensus 95 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~--~~~~~~~-~~~~~elae~L~~~~----~~~~~~v~~~~sG 167 (447)
+.+|+.+|||.+|.. .+. .+|.|.+|+.++++... +....|. .....+|+++|++++ +...++|+|++|+
T Consensus 65 ~~~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~ 141 (449)
T 3qgu_A 65 KNPDAKIISLGIGDT--TEP-LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGS 141 (449)
T ss_dssp HCTTCCCEECSSCCC--CCC-CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCH
T ss_pred hCCCCCEEEeeCCCC--CCC-CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCH
Confidence 346899999999865 344 68999999999998653 2223343 344678888888886 5566789999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235 168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247 (447)
Q Consensus 168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i 247 (447)
+++++.+..+ ..+++.|++.+++||+....+...+....++. .....+..++... ...+..| +++
T Consensus 142 ~~al~~~~~l---~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~-~~~~~~~~~~~~~--~~~~~~~-------~~~-- 206 (449)
T 3qgu_A 142 KCDIARIQMM---FGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNG-TGFDGIEYMVCNP--DNHFFPD-------LSK-- 206 (449)
T ss_dssp HHHHHHHHHH---HCSSSCEEEEESCCTHHHHHHHHHTCSCCBCS-SSBTTEEEEECCG--GGTTCCC-------GGG--
T ss_pred HHHHHHHHHH---hCCCCEEEEcCCCChhHHHHHHHcCCcccccc-cccceeEEEeccc--ccCCcCC-------hhH--
Confidence 9999988332 23668899999999998876665543211110 0011233333221 1111112 111
Q ss_pred HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc----CCCCCEEEee
Q 013235 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH----GVVPDIVTMA 323 (447)
Q Consensus 248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~----gv~pDivt~s 323 (447)
. .++.+|+++..++++|.+. +.+.+++|.++|++||+++|+||+|++|++.|.....+..+ ++..++.++|
T Consensus 207 --~--~~~~~v~l~~p~NPtG~~~-~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 281 (449)
T 3qgu_A 207 --A--KRTDIIFFCSPNNPTGAAA-TRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFS 281 (449)
T ss_dssp --C--CCCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECS
T ss_pred --c--CCCCEEEEeCCCCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecch
Confidence 1 2456677767778888765 77889999999999999999999999998876322233332 3344566899
Q ss_pred cccc-CCccccccccCHHHHH--------hhcCCcccccCCCChHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHH
Q 013235 324 KGIG-NGIPLGAVVTTPEIAE--------VLTRRNYFNTFGGNPVCTAAGHAVLKVIQ---KDKLQNNAHVVGSYLKERL 391 (447)
Q Consensus 324 K~lg-~G~pigav~~~~~i~~--------~l~~~~~~~T~~~np~a~aaala~L~~i~---~~~l~~~~~~~g~~l~~~L 391 (447)
|.+| +|+|+|++++++++++ .+.......+++.|+++++++.++|+... -+++.++++++.++|++.|
T Consensus 282 K~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 361 (449)
T 3qgu_A 282 KYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTF 361 (449)
T ss_dssp GGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 8999999999988765 22222233455789999999999886521 2345666777777777777
Q ss_pred HHHHHhcCCeeeEee-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235 392 TALKDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS 445 (447)
Q Consensus 392 ~~l~~~~~~i~~vrg-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~ 445 (447)
+++ ++ .-+.. .|+++++.+. . ....++++.|+++ ||++.+
T Consensus 362 ~~~----g~-~~~~~~~~~~~~~~~~-~--------~~~~~~~~~l~~~~gI~v~p 403 (449)
T 3qgu_A 362 TEM----GF-SVYGGDDAPYIWVGFP-G--------KPSWDVFAEILERCNIVTTP 403 (449)
T ss_dssp HHT----TC-CEEESSSSSEEEEECT-T--------SCHHHHHHHHHHHHCEECEE
T ss_pred HHC----CC-eeeCCCCeeEEEEECC-C--------CCHHHHHHHHHHHCCEEEec
Confidence 665 22 22333 4788888873 1 0135688888876 999864
No 91
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.93 E-value=3.6e-25 Score=221.32 Aligned_cols=271 Identities=14% Similarity=0.099 Sum_probs=193.0
Q ss_pred chHHHHHHHHHHHhC-CCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCC
Q 013235 140 NHAIADFAEALASKM-PGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG 218 (447)
Q Consensus 140 ~~~~~elae~L~~~~-~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g 218 (447)
.....+|+++|++++ +.+.+++++++||++|++.+++... .+++.|++..++|++........ |
T Consensus 62 ~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~-------------g 126 (375)
T 3op7_A 62 IEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI--EPGDHVISLYPTYQQLYDIPKSL-------------G 126 (375)
T ss_dssp TTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC--CTTCEEEEEESSCTHHHHHHHHT-------------T
T ss_pred CCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc--CCCCEEEEeCCCchhHHHHHHHc-------------C
Confidence 444678999999987 3456789999999999999998653 35688999999999866544322 2
Q ss_pred eEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc
Q 013235 219 VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA 298 (447)
Q Consensus 219 ~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t 298 (447)
...+..|......|..| .++|++.+. .++++|++++.++++|.+. +++++++|.++|++||+++|+||+|+
T Consensus 127 ~~~~~v~~~~~~~~~~d----~~~l~~~l~----~~~~~v~~~~~~nptG~~~-~~~~l~~i~~la~~~~~~li~De~~~ 197 (375)
T 3op7_A 127 AEVDLWQIEEENGWLPD----LEKLRQLIR----PTTKMICINNANNPTGAVM-DRTYLEELVEIASEVGAYILSDEVYR 197 (375)
T ss_dssp CEEEEEEEEGGGTTEEC----HHHHHHHCC----TTCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECCSC
T ss_pred CEEEEEeccccCCCCCC----HHHHHHhhc----cCCeEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccc
Confidence 22222211111112223 567777664 2677888998889999766 78889999999999999999999999
Q ss_pred CccccCCCcccccccCCCCCEEEeecccc-CCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHH
Q 013235 299 GFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQ 377 (447)
Q Consensus 299 Gfgr~G~~~~~~~~~gv~pDivt~sK~lg-~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~ 377 (447)
+|++.+ .....+.++..+++.+++|.++ +|+|+|++++++++++.+.......+++.++++++++.++|+.. +++.
T Consensus 198 ~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~ 274 (375)
T 3op7_A 198 SFSELD-VPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAHY--QEIL 274 (375)
T ss_dssp CCSSSC-CCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTH--HHHH
T ss_pred cccccC-CCchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhcc--HHHH
Confidence 998764 3333456677788889999998 79999999999999999987767788899999999999988743 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeeeEeec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHH-HhCCceeec
Q 013235 378 NNAHVVGSYLKERLTALKDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKM-KGICALFFS 445 (447)
Q Consensus 378 ~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l-~~~Gvlv~~ 445 (447)
++.++..+..++.|.+..++++.+..++.. |.+..+.+..+. ...++++.| .++||++.+
T Consensus 275 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ll~~~gi~v~~ 336 (375)
T 3op7_A 275 ERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDM--------PMEDFCLQLLQEHGVLLVP 336 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSS--------CHHHHHHHHHHHHCEECEE
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCC--------CHHHHHHHHHHhCCEEEeC
Confidence 444444444445555544455555544444 455666663211 135677777 578999864
No 92
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.93 E-value=4.2e-26 Score=229.68 Aligned_cols=318 Identities=12% Similarity=0.032 Sum_probs=196.8
Q ss_pred EecCCCeEEEecCCcccccCC--CCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCCC------CCceEEE-
Q 013235 94 FDENGRRYLDAFGGIATVCCG--HCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPG------NLKVVFF- 163 (447)
Q Consensus 94 ~d~dG~~ylD~~~g~~~~~lG--h~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~~------~~~~v~~- 163 (447)
.+..|+.+|||.+|.+..+.| +.+|.|.+|+.++++.. . ...| +.....+|+++|++++.. +.++|++
T Consensus 21 ~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~-~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~ 98 (396)
T 2q7w_A 21 RADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE-T-TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTA 98 (396)
T ss_dssp -------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHC-C-CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred hccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcc-c-ccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEE
Confidence 334567899999998655556 56799999999887653 1 1223 344456777777777621 2467888
Q ss_pred -cCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHH
Q 013235 164 -TNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKD 242 (447)
Q Consensus 164 -~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~ 242 (447)
++||++|++.++++++...++++|++.+++||+....+...+. .+..++. .....++.| .++
T Consensus 99 ~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~-----------~~~~~~~--~~~~~~~~d----~~~ 161 (396)
T 2q7w_A 99 QTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGL-----------EVREYAY--YDAENHTLD----FDA 161 (396)
T ss_dssp EESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTC-----------EEEEEEC--EETTTTEEC----HHH
T ss_pred ecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCC-----------ceEEEec--ccCCCCCcC----HHH
Confidence 9999999999999876556778999999999997765544321 1122221 100112234 677
Q ss_pred HHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccC-CCcccccccCCCCC---
Q 013235 243 VQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG-SHFWGFEAHGVVPD--- 318 (447)
Q Consensus 243 le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G-~~~~~~~~~gv~pD--- 318 (447)
+++.+....+ +.+++++...++++|.+ .+.+++++|.++|++||+++|+||+|++|++.| ...+.+..++..+|
T Consensus 162 l~~~l~~~~~-~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (396)
T 2q7w_A 162 LINSLNEAQA-GDVVLFHGCCHNPTGID-PTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELI 239 (396)
T ss_dssp HHHHHTTCCT-TCEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEE
T ss_pred HHHHHHhCCC-CCEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEE
Confidence 8877764322 34556655556666765 478899999999999999999999999997753 11233332322233
Q ss_pred -EEEeecccc-CCcccccccc---CHH----HHHhhcCCcccccCC-CChHHHHHHHHHHHHH------hh--hhHHHHH
Q 013235 319 -IVTMAKGIG-NGIPLGAVVT---TPE----IAEVLTRRNYFNTFG-GNPVCTAAGHAVLKVI------QK--DKLQNNA 380 (447)
Q Consensus 319 -ivt~sK~lg-~G~pigav~~---~~~----i~~~l~~~~~~~T~~-~np~a~aaala~L~~i------~~--~~l~~~~ 380 (447)
+.+++|.+| +|+|+|++++ +++ +++.+... +..+++ .|+++++++.++|+.. ++ +++.+++
T Consensus 240 ~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~ 318 (396)
T 2q7w_A 240 VASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAA-IRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRI 318 (396)
T ss_dssp EEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHH-HHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHH
T ss_pred EEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHH-HhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHH
Confidence 337899999 7999999986 563 44444321 223454 4899999998888643 01 1233445
Q ss_pred HHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 381 ~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+++.+++.+.|+++....+.....+..|+++++++ + ...+.+.|.++||++.+
T Consensus 319 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~l~~~gv~v~~ 371 (396)
T 2q7w_A 319 QRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGL--------T----KEQVLRLREEFGVYAVA 371 (396)
T ss_dssp HHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCC--------C----HHHHHHHHHHHCEECCT
T ss_pred HHHHHHHHHHHHhcCCCCCcceecCCCceEEEecC--------C----HHHHHHHHHhcCeeecC
Confidence 55556666655554100001111234466666544 1 13455667788999865
No 93
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.93 E-value=1.7e-25 Score=222.83 Aligned_cols=290 Identities=13% Similarity=0.088 Sum_probs=200.6
Q ss_pred CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHH
Q 013235 98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177 (447)
Q Consensus 98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ 177 (447)
.+.+|||.+|.. ++|+. |.+ + +. ....|+++...+++++|+++++.+.++|++++|++||++.+++.
T Consensus 28 ~~~~i~l~~~~~--~~~~~-~~v--a----~~----~~~~Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~ 94 (356)
T 1fg7_A 28 GNGDVWLNANEY--PTAVE-FQL--T----QQ----TLNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRA 94 (356)
T ss_dssp TTCSEECSSCCC--SSCCC-CCC--C----CC----CTTSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHH
T ss_pred CCceEEeeCCCC--CCCCC-HhH--h----hh----hhccCCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHH
Confidence 357899999875 77874 666 2 11 12346655578899999999876667899999999999999986
Q ss_pred HHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEE
Q 013235 178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG 257 (447)
Q Consensus 178 ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aa 257 (447)
... .|+++|++.+++||+....+...+ ...+..|.. ..|+.| .+++++.+. ++.+
T Consensus 95 ~~~-~g~d~Vl~~~p~~~~~~~~~~~~g-------------~~~~~v~~~--~~~~~d----~~~l~~~i~-----~~~~ 149 (356)
T 1fg7_A 95 FCE-PGKDAILYCPPTYGMYSVSAETIG-------------VECRTVPTL--DNWQLD----LQGISDKLD-----GVKV 149 (356)
T ss_dssp HCC-TTTCEEEECSSSCTHHHHHHHHHT-------------CEEEECCCC--TTSCCC----HHHHHTSCT-----TEEE
T ss_pred HhC-CCCCEEEEeCCChHHHHHHHHHcC-------------CEEEEeeCC--CCCCCC----HHHHHHHhc-----CCCE
Confidence 642 233789999999999776554332 222222221 123344 455554442 4566
Q ss_pred EEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc-cccCCCCCEEEeecccc-CCcccccc
Q 013235 258 FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF-EAHGVVPDIVTMAKGIG-NGIPLGAV 335 (447)
Q Consensus 258 vi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~-~~~gv~pDivt~sK~lg-~G~pigav 335 (447)
+++...++++|.+. +.+.+++|.++|+ +|+++|+||+|++|++.. .++.. +.++....+.+++|.+| +|+|+|++
T Consensus 150 v~l~~p~nptG~~~-~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~ 226 (356)
T 1fg7_A 150 VYVCSPNNPTGQLI-NPQDFRTLLELTR-GKAIVVADEAYIEFCPQA-SLAGWLAEYPHLAILRTLSKAFALAGLRCGFT 226 (356)
T ss_dssp EEEESSCTTTCCCC-CHHHHHHHHHHHT-TTCEEEEECTTGGGSGGG-CSGGGTTTCTTEEEEEESSSTTCCGGGCCEEE
T ss_pred EEEeCCCCCCCCCC-CHHHHHHHHHhCC-CCCEEEEEccchhhcCCC-cHHHHHhhCCCEEEEecchHhhcCchhhhEEE
Confidence 76666678888765 6788999999999 999999999999987433 33333 33333344558999998 89999999
Q ss_pred ccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHHhcCCe-eeEeecceeE
Q 013235 336 VTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ---KDKLQNNAHVVGSYLKERLTALKDKYGII-GDVRGRGFLL 411 (447)
Q Consensus 336 ~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~---~~~l~~~~~~~g~~l~~~L~~l~~~~~~i-~~vrg~Gl~~ 411 (447)
++++++++.+.. ...+|+.|+++++++.++|+... -++..+++++..+++.+.|++ ++.+ ...++.|+++
T Consensus 227 ~~~~~~~~~l~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~ 300 (356)
T 1fg7_A 227 LANEEVINLLMK--VIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKE----IPCVEQVFDSETNYI 300 (356)
T ss_dssp EECHHHHHHHHH--HSCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH----STTEEEECCCSSSEE
T ss_pred EeCHHHHHHHHH--hcCCCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHh----CCCceEECCCCCeEE
Confidence 999999888764 23567899999999998886432 122334444555555555544 4432 3346778999
Q ss_pred EEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 412 GVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 412 giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
++++. + ..++.+.|.++||++++
T Consensus 301 ~~~~~-~----------~~~l~~~L~~~gI~v~~ 323 (356)
T 1fg7_A 301 LARFK-A----------SSAVFKSLWDQGIILRD 323 (356)
T ss_dssp EEEET-T----------HHHHHHHHHHTTEECEE
T ss_pred EEECC-C----------HHHHHHHHHHCCEEEEE
Confidence 88873 1 35688899999999976
No 94
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.93 E-value=4e-26 Score=229.82 Aligned_cols=316 Identities=13% Similarity=0.052 Sum_probs=206.1
Q ss_pred CCCeEEEecCCcccccCC--CCCHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhCC-C--CCceEEE--cCCHH
Q 013235 97 NGRRYLDAFGGIATVCCG--HCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKMP-G--NLKVVFF--TNSGT 168 (447)
Q Consensus 97 dG~~ylD~~~g~~~~~lG--h~~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~~-~--~~~~v~~--~~sGs 168 (447)
.|..+|||..|....+.+ +.+|.|.+|+.++++.. . ...|. .....+++++|++++. . ..++|+| ++||+
T Consensus 24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~-~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~ 101 (394)
T 2ay1_A 24 PRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETE-T-TKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGT 101 (394)
T ss_dssp CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHC-C-CCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHH
T ss_pred CCccccccccceeeCCCCCccCcHHHHHHHHHhcCCc-c-cCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCch
Confidence 356789999988655555 67899999999887652 1 12232 2345677777777652 2 3578988 99999
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235 169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID 248 (447)
Q Consensus 169 eA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~ 248 (447)
+|++.++++++.+.++++|++.+++||+....+...+. .+..++.. ....++.| .+++++.+.
T Consensus 102 ~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~-----------~~~~~~~~--~~~~~~~d----~~~l~~~l~ 164 (394)
T 2ay1_A 102 GALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGL-----------PVQTYRYF--DAETRGVD----FEGMKADLA 164 (394)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTC-----------CEEEEECE--ETTTTEEC----HHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCC-----------ceEEEecc--cccCCccC----HHHHHHHHH
Confidence 99999999877655678899999999997765544321 12222221 00112234 567887776
Q ss_pred ccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC-Cccccccc-CCCCCEE---Eee
Q 013235 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGFEAH-GVVPDIV---TMA 323 (447)
Q Consensus 249 ~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~-~~~~~~~~-gv~pDiv---t~s 323 (447)
.. +.+.+++++...++++|.+. +.+++++|.++|++||+++|+||+|++|+++|. ..+.+..+ ...+|++ ++|
T Consensus 165 ~~-~~~~~~~~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 242 (394)
T 2ay1_A 165 AA-KKGDMVLLHGCCHNPTGANL-TLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCS 242 (394)
T ss_dssp TC-CTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECT
T ss_pred hC-CCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEecc
Confidence 43 22456777777788888754 788999999999999999999999999987531 12222222 1234543 689
Q ss_pred cccc-CCcccccccc---CHHHHHhhcCC---cccccCC-CChHHHHHHHHHHHHHh--------hhhHHHHHHHHHHHH
Q 013235 324 KGIG-NGIPLGAVVT---TPEIAEVLTRR---NYFNTFG-GNPVCTAAGHAVLKVIQ--------KDKLQNNAHVVGSYL 387 (447)
Q Consensus 324 K~lg-~G~pigav~~---~~~i~~~l~~~---~~~~T~~-~np~a~aaala~L~~i~--------~~~l~~~~~~~g~~l 387 (447)
|.+| +|+|+|++++ ++++++.+... .+..+|+ .|+++++++.++|+..+ -+++.+++++..+++
T Consensus 243 K~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 322 (394)
T 2ay1_A 243 KNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQL 322 (394)
T ss_dssp TTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 8999999998 67665433221 1224454 48999999999887541 123556666667777
Q ss_pred HHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 388 KERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 388 ~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
.+.|+++....++....+..|+++++++ + ...+.+.|.++||++.+
T Consensus 323 ~~~L~~~~~~~~~~~~~~~~g~~~~~~~--------~----~~~~~~~l~~~gi~v~~ 368 (394)
T 2ay1_A 323 AGELRDLSGSDRFGFVAEHRGMFSRLGA--------T----PEQVKRIKEEFGIYMVG 368 (394)
T ss_dssp HHHHHHHHTSSTTTHHHHCCSSEEECCC--------C----HHHHHHHHHHHCEECCT
T ss_pred HHHHHhcCCCCCeeEEcCCceEEEeeCC--------C----HHHHHHHHHhCCEEecC
Confidence 7777665311011111123477777654 1 13466667789999865
No 95
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.93 E-value=5.6e-25 Score=222.70 Aligned_cols=309 Identities=14% Similarity=0.053 Sum_probs=206.4
Q ss_pred cCCCeEEEecCCcccc-cCCCCCHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhC------CCCCceEEEcCCH
Q 013235 96 ENGRRYLDAFGGIATV-CCGHCHPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKM------PGNLKVVFFTNSG 167 (447)
Q Consensus 96 ~dG~~ylD~~~g~~~~-~lGh~~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~------~~~~~~v~~~~sG 167 (447)
.+|+.+|||..|..+. .++ .+|++.+++.++++... ..|.. ....++.+.|++++ +.+.++|++++||
T Consensus 35 ~~g~~~i~l~~~~~~~~~~~-~~~~v~~a~~~~~~~~~---~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~ 110 (406)
T 1xi9_A 35 KKGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGH---NYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAV 110 (406)
T ss_dssp HTTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTC---CSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHH
T ss_pred HcCCCEEEecCCCCCcCCCC-CCHHHHHHHHHHHhcCC---CCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCCh
Confidence 4688999999887643 556 57999999999987642 12222 12334445554443 3456789999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235 168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247 (447)
Q Consensus 168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i 247 (447)
++|++.+++.+. .+++.|++.+++||+....+...+. .+..++.. ....|..| .++|++.+
T Consensus 111 ~~al~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~g~-----------~~~~v~~~--~~~~~~~d----~~~l~~~l 171 (406)
T 1xi9_A 111 TEALQLIFGALL--DPGDEILVPGPSYPPYTGLVKFYGG-----------KPVEYRTI--EEEDWQPD----IDDIRKKI 171 (406)
T ss_dssp HHHHHHHHHHHC--CTTCEEEEEESCCHHHHHHHHHTTC-----------EEEEEEEE--GGGTSEEC----HHHHHHHC
T ss_pred HHHHHHHHHHhC--CCCCEEEEcCCCCccHHHHHHHcCC-----------EEEEeecC--CCcCCcCC----HHHHHHhh
Confidence 999999998763 3567899999999987655432211 11222211 00112223 56777766
Q ss_pred HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCC--CEE--Eee
Q 013235 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVP--DIV--TMA 323 (447)
Q Consensus 248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~p--Div--t~s 323 (447)
.. ++++|+++..++++|.+. +++++++|.++|++||+++|+||+|++|.+.+ ....+..++ .+ |++ +++
T Consensus 172 ~~----~~~~v~i~~p~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~-~~~~~i~~~s~s 244 (406)
T 1xi9_A 172 TD----RTKAIAVINPNNPTGALY-DKKTLEEILNIAGEYEIPVISDEIYDLMTYEG-EHISPGSLT-KDVPVIVMNGLS 244 (406)
T ss_dssp CT----TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS-CCCCHHHHC-SSSCEEEEEEST
T ss_pred Cc----CceEEEEECCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEEcCccccccCC-CCCCHHHcC-CCceEEEEeccc
Confidence 42 577888888888888775 67899999999999999999999999987744 344444443 22 344 578
Q ss_pred cccc-CCccccccc--cCH----HHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHH
Q 013235 324 KGIG-NGIPLGAVV--TTP----EIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTAL 394 (447)
Q Consensus 324 K~lg-~G~pigav~--~~~----~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l 394 (447)
|.++ +|+|+|+++ +++ ++++.+....... ++.|+++++++.++|+...+ +++.++++++.+++.+.|++
T Consensus 245 K~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~- 322 (406)
T 1xi9_A 245 KVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNE- 322 (406)
T ss_dssp TTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred cccCCCccEEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 9998 799999999 898 9988776433223 78899999999999963322 34456666666666666654
Q ss_pred HHhcCCeeeEeec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235 395 KDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS 445 (447)
Q Consensus 395 ~~~~~~i~~vrg~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~ 445 (447)
++.+..+++. |+++++++..... . ...++.+.|+ ++||++.+
T Consensus 323 ---~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~l~~~l~~~~gi~v~~ 366 (406)
T 1xi9_A 323 ---IPGISTTKPQGAFYIFPKIEVGPW---K---NDKEFVLDVLHNAHVLFVH 366 (406)
T ss_dssp ---STTEECCCCCBSSEECCEECSCSC---S---SHHHHHHHHHHHHCEECEE
T ss_pred ---CCCCeeecCCeeEEEEEecCccCC---C---CHHHHHHHHHHhCCEEEeC
Confidence 3333333333 5666667742100 0 1356888887 88998864
No 96
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.93 E-value=1.1e-24 Score=218.21 Aligned_cols=303 Identities=12% Similarity=0.034 Sum_probs=207.8
Q ss_pred CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccc----cccc--hHHHHHHHHHHHhCCCCCceEEEcCCHHHH
Q 013235 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTV----LYLN--HAIADFAEALASKMPGNLKVVFFTNSGTEA 170 (447)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~----~~~~--~~~~elae~L~~~~~~~~~~v~~~~sGseA 170 (447)
++..|+|.. ..|+.+|.|.+|+.+++....+... .|+. +...+++++|+++++.+.+++++++||++|
T Consensus 15 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 88 (390)
T 1elu_A 15 ANKTYFNFG------GQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTG 88 (390)
T ss_dssp TTSEECCTT------TCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHH
T ss_pred CCeEEecCC------ccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHH
Confidence 455666643 3578889999999999876532111 3443 677899999999997666789999999999
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235 171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG 250 (447)
Q Consensus 171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~ 250 (447)
++.+++.++ ..++++|++..++||+.......+.... ...+..++.+ ....+..| .++|++.+.
T Consensus 89 ~~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~~~-------g~~~~~v~~~--~~~~~~~d----~~~l~~~i~-- 152 (390)
T 1elu_A 89 CDIVLWGLD-WHQGDEILLTDCEHPGIIAIVQAIAARF-------GITYRFFPVA--ATLNQGDA----AAVLANHLG-- 152 (390)
T ss_dssp HHHHHHHSC-CCTTCEEEEETTCCHHHHHHHHHHHHHH-------CCEEEEECCG--GGSSSSCH----HHHHHTTCC--
T ss_pred HHHHHhCCC-CCCCCEEEEecCcccHHHHHHHHHHHHh-------CcEEEEEcCC--CCCCccch----HHHHHHhcC--
Confidence 999999774 3456899999999998764321110000 0012223221 10112223 455655543
Q ss_pred CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHH----HhCCEEEEeccccCccccCCCcccccccCCCCCEEE--eec
Q 013235 251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIK----KAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAK 324 (447)
Q Consensus 251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~----~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK 324 (447)
+++++|+++++++++|.+.+ +++|.++|+ +||+++|+||+|+ +|... .+.....+|+++ ++|
T Consensus 153 --~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~-----~~~~~~~~d~~~~s~~K 220 (390)
T 1elu_A 153 --PKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLP-----LDFSRLEVDYYAFTGHK 220 (390)
T ss_dssp --TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTBC-----CCTTTSCCSEEEEESSS
T ss_pred --CCceEEEEeccccCCceecC----HHHHHHHHhhhhhhcCcEEEEEcccc-cCCcC-----CChhhcCCCEEEccccc
Confidence 36889999999999998886 999999999 9999999999996 55432 122234578887 889
Q ss_pred cccCCccccccccCHHHHHhhcCCc----------------------ccccCCCChHHHHHHHHHHHHHhhhh----HHH
Q 013235 325 GIGNGIPLGAVVTTPEIAEVLTRRN----------------------YFNTFGGNPVCTAAGHAVLKVIQKDK----LQN 378 (447)
Q Consensus 325 ~lg~G~pigav~~~~~i~~~l~~~~----------------------~~~T~~~np~a~aaala~L~~i~~~~----l~~ 378 (447)
.+.+|.++|++++++++++.+.... ...++..|+++++++.++|+.+++++ +.+
T Consensus 221 ~~~~~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~ 300 (390)
T 1elu_A 221 WFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQ 300 (390)
T ss_dssp TTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred cccCCCceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888999999999887765421 12234567888888888888876544 456
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeeeE---eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 379 NAHVVGSYLKERLTALKDKYGIIGDV---RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 379 ~~~~~g~~l~~~L~~l~~~~~~i~~v---rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+.+++.+++.+.|+++ +.+.-+ ++.|.|+.+++.++. ...++.+.|.++||++.+
T Consensus 301 ~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~gi~v~~ 358 (390)
T 1elu_A 301 AICQRSEFLWRGLNQL----PHVHCLATSAPQAGLVSFTVDSPL--------GHRAIVQKLEEQRIYLRT 358 (390)
T ss_dssp HHHHHHHHHHHHHHHS----TTEEESCSSCCSSSEEEEEECSSS--------CHHHHHHHHHHTTEECEE
T ss_pred HHHHHHHHHHHHHHhc----CCcEEecCccccccEEEEEcCCCC--------CHHHHHHHHHHCCEEEEe
Confidence 6666667777766653 222222 567888888873210 135688899999999875
No 97
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.93 E-value=7.1e-26 Score=231.04 Aligned_cols=311 Identities=13% Similarity=0.066 Sum_probs=204.4
Q ss_pred CeEEEecCCcccccCCCCCHHH--HHHHHHHHHhcccccccccch-HHHHHHHHHHHhC-----CCCCce---EEEcCCH
Q 013235 99 RRYLDAFGGIATVCCGHCHPYV--VDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKM-----PGNLKV---VFFTNSG 167 (447)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v--~~A~~~~l~~~~~~~~~~~~~-~~~elae~L~~~~-----~~~~~~---v~~~~sG 167 (447)
+.+|||..|... .+|+ +|.+ .+++.++++.. ....|... ...++++.|++++ +.+.++ |++++||
T Consensus 47 ~~~i~l~~g~~~-~~~~-~~~~~~~~a~~~~~~~~--~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~ 122 (430)
T 2x5f_A 47 STTYNATIGMAT-NKDG-KMFASSLDAMFNDLTPD--EIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNAL 122 (430)
T ss_dssp TCSEECCCSSCE-ETTE-ECCCHHHHTTBSSCCGG--GTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHH
T ss_pred CCcEEeeeeecc-CCCC-chhhHHHHHHHHhcCcc--cccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCc
Confidence 568999988864 5674 6767 77777666441 11234332 3567777777766 555677 9999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhh-ccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHH
Q 013235 168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMG-ATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL 246 (447)
Q Consensus 168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~-~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~ 246 (447)
++|++.+++... .+++.|++.+++||+....+.. . |...+..|..... |+.| .+++++.
T Consensus 123 ~~al~~~~~~l~--~~gd~Vl~~~p~y~~~~~~~~~~~-------------g~~~~~~~~~~~~-~~~d----~~~l~~~ 182 (430)
T 2x5f_A 123 THGLSLVGDLFV--NQDDTILLPEHNWGNYKLVFNTRN-------------GANLQTYPIFDKD-GHYT----TDSLVEA 182 (430)
T ss_dssp HHHHHHHHHHHC--CTTCEEEEESSCCTHHHHHHTTTT-------------CCEEEEECCBCTT-SCBC----SHHHHHH
T ss_pred hHHHHHHHHHHh--CCCCEEEEcCCcCccHHHHHHHhc-------------CCeEEEEeccCcc-CCcC----HHHHHHH
Confidence 999999998663 2458899999999987654433 2 2222222221111 3334 4677777
Q ss_pred HHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHH-----hCCEEEEeccccCccccCCCcccc--cccCCCCC-
Q 013235 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK-----AGGLCIADEVQAGFARTGSHFWGF--EAHGVVPD- 318 (447)
Q Consensus 247 i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~-----~g~llI~DEv~tGfgr~G~~~~~~--~~~gv~pD- 318 (447)
+....++..+.++++| ++++|.+ .+.+++++|.++|++ ||+++|+||+|++|.+.|..+..+ ...+..++
T Consensus 183 l~~~~~~~~~v~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (430)
T 2x5f_A 183 LQSYNKDKVIMILNYP-NNPTGYT-PTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNA 260 (430)
T ss_dssp HHHCCSSEEEEEECSS-CTTTCCC-CCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTT
T ss_pred HHhcCCCCEEEEEcCC-CCCCCCc-CCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCc
Confidence 7643222334556666 7778865 478899999999999 999999999999998776322222 22233455
Q ss_pred -----EEEeecccc-CCcccccccc---CHHHHHhhcCCccc----ccCCCChHHHHHHHHHHH-HH---hh-hhHHHHH
Q 013235 319 -----IVTMAKGIG-NGIPLGAVVT---TPEIAEVLTRRNYF----NTFGGNPVCTAAGHAVLK-VI---QK-DKLQNNA 380 (447)
Q Consensus 319 -----ivt~sK~lg-~G~pigav~~---~~~i~~~l~~~~~~----~T~~~np~a~aaala~L~-~i---~~-~~l~~~~ 380 (447)
+.+++|.++ +|+|+|++++ ++++++.+...... .+++.|+++++++.++|+ .. +. ++..+++
T Consensus 261 ~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 340 (430)
T 2x5f_A 261 ILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTL 340 (430)
T ss_dssp EEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 346899998 7999999999 99998887653333 678899999999999987 32 11 1134444
Q ss_pred HHHHHHHHHHHHHHHHhcCCeeeEee-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh-CCceeec
Q 013235 381 HVVGSYLKERLTALKDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKG-ICALFFS 445 (447)
Q Consensus 381 ~~~g~~l~~~L~~l~~~~~~i~~vrg-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~ 445 (447)
++..+++.+.|++...+.+ +..++. .|+++++++. .. ...++.+.|++ +||++.+
T Consensus 341 ~~~~~~l~~~L~~~~~~~g-~~~~~~~~g~~~~~~~~-~~--------~~~~~~~~l~~~~gi~v~~ 397 (430)
T 2x5f_A 341 KERYEVTKEVVYADQYHSH-WQAYDFNSGYFMAIKVH-DV--------DPEALRKHLIDKYSIGVIA 397 (430)
T ss_dssp HHHHHHHHHHHTCGGGTTT-EEECCCCBSSEEEEEES-SS--------CHHHHHHHHHHHHCEECEE
T ss_pred HHHHHHHHHHHHhhCCCCC-ceeeCCCceEEEEeCCC-CC--------CHHHHHHHHHHhCCEEEec
Confidence 5555555555442211222 322333 3577888884 10 13568889988 8999875
No 98
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.92 E-value=2.3e-24 Score=217.21 Aligned_cols=304 Identities=15% Similarity=0.104 Sum_probs=202.7
Q ss_pred CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccc-ccccc-----chHHHHHHHHHHHhCC--CCCceEEEcCCHH
Q 013235 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS-TVLYL-----NHAIADFAEALASKMP--GNLKVVFFTNSGT 168 (447)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~-~~~~~-----~~~~~elae~L~~~~~--~~~~~v~~~~sGs 168 (447)
+|+.+|||.+|.. .+ ..+|.|.+|+.++++..... ...|. .+...++++.+.+.++ .+.++|+|++||+
T Consensus 33 ~~~~~i~l~~~~~--~~-~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~ 109 (398)
T 3ele_A 33 GKENVYDFSIGNP--SI-PAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAA 109 (398)
T ss_dssp CGGGCEECCSCCC--CS-CCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHH
T ss_pred CCCCeEEeecCCC--CC-CCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHH
Confidence 3568999998743 23 37899999999998773211 11221 2334445555544433 4567899999999
Q ss_pred HHHHHHHHHHHhhcCC-CeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235 169 EANELAIMMARLYTGC-NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247 (447)
Q Consensus 169 eA~e~Aik~ar~~t~~-~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i 247 (447)
+|++.+++.... ++ +.|++.+++||+....+... |...+..|... ..|+.| .++|++.+
T Consensus 110 ~al~~~~~~l~~--~g~d~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~-~~~~~d----~~~l~~~l 169 (398)
T 3ele_A 110 ASLSICFRALTS--DAYDEFITIAPYFPEYKVFVNAA-------------GARLVEVPADT-EHFQID----FDALEERI 169 (398)
T ss_dssp HHHHHHHHHHCC--STTCEEEEESSCCTHHHHHHHHT-------------TCEEEEECCCT-TTSSCC----HHHHHHTC
T ss_pred HHHHHHHHHHcC--CCCCEEEEeCCCchhhHHHHHHc-------------CCEEEEEecCC-cCCcCC----HHHHHHHh
Confidence 999999987632 44 89999999999876554332 22222222211 123334 56677665
Q ss_pred HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHH------hCCEEEEeccccCccccCCCcc-cccccCCCCCEE
Q 013235 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK------AGGLCIADEVQAGFARTGSHFW-GFEAHGVVPDIV 320 (447)
Q Consensus 248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~------~g~llI~DEv~tGfgr~G~~~~-~~~~~gv~pDiv 320 (447)
. + ++.+|++...++++|.+. +.+.+++|.++|++ ||+++|+||+|++|.+.|.... ..+.++....+.
T Consensus 170 ~---~-~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~ 244 (398)
T 3ele_A 170 N---A-HTRGVIINSPNNPSGTVY-SEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCY 244 (398)
T ss_dssp C---T-TEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEE
T ss_pred C---c-CCCEEEEcCCCCCCCCCC-CHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEE
Confidence 3 2 567777766678888766 66779999999999 9999999999999988773221 123344444555
Q ss_pred Eeecccc-CCccccccccCHHHH------HhhcCC-cccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 013235 321 TMAKGIG-NGIPLGAVVTTPEIA------EVLTRR-NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLT 392 (447)
Q Consensus 321 t~sK~lg-~G~pigav~~~~~i~------~~l~~~-~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~ 392 (447)
+++|.++ +|+|+|+++++++++ +.+... ....+++.++++++++.+.|+ +.+..+++++..+++.+.|+
T Consensus 245 s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~l~~~L~ 321 (398)
T 3ele_A 245 SYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQG---ATGDINAYKENRDLLYEGLT 321 (398)
T ss_dssp ESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTT---CCCCHHHHHHHHHHHHHHHH
T ss_pred ehhhcCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHH
Confidence 7999999 899999999998743 222211 122456677788877766654 44466788888888988888
Q ss_pred HHHHhcCCeeeEee-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 393 ALKDKYGIIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 393 ~l~~~~~~i~~vrg-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
++ .. .-+.. .|+++++++... ...++.+.|.++||++.+
T Consensus 322 ~~--g~---~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~ 361 (398)
T 3ele_A 322 RI--GY---HCFKPDGAFYMFVKALED---------DSNAFCEKAKEEDVLIVA 361 (398)
T ss_dssp HH--TC---CEECCSBSSEEEEECSSS---------CHHHHHHHHHTTTEECEE
T ss_pred Hc--CC---eecCCCeeEEEEEEcCCC---------CHHHHHHHHHHCCEEEeC
Confidence 76 22 22233 356577776321 145688889999999874
No 99
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.92 E-value=2.1e-24 Score=218.85 Aligned_cols=306 Identities=14% Similarity=0.079 Sum_probs=202.9
Q ss_pred cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc--cccccccchHHHHHHHHHHHhCC--CCCceEEEcCCHHHHH
Q 013235 96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEAN 171 (447)
Q Consensus 96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~--~~~~~~~~~~~~elae~L~~~~~--~~~~~v~~~~sGseA~ 171 (447)
.+|+.+|||.+|.. .++ .+|.+.+|+ ++++... +....+..+...++++.+.+..+ .+.+++++++||++|+
T Consensus 40 ~~g~~~i~l~~~~~--~~~-~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~ 115 (409)
T 2gb3_A 40 KRGVRIHHLNIGQP--DLK-TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI 115 (409)
T ss_dssp HTTCEEEECSSCCC--CSC-CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHH
T ss_pred hcCCCEEeccCCCC--CCC-CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHH
Confidence 46889999998876 456 578999999 8886531 11111122333444444443322 3457899999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235 172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT 251 (447)
Q Consensus 172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~ 251 (447)
+.+++.+. .++++|++.+++||+....+... +. .+..++... ...|.. .++|++.+.
T Consensus 116 ~~~~~~~~--~~gd~Vl~~~~~~~~~~~~~~~~-g~----------~~~~v~~~~--~~~~~~-----~~~l~~~l~--- 172 (409)
T 2gb3_A 116 LFSFAVIA--NPGDEILVLEPFYANYNAFAKIA-GV----------KLIPVTRRM--EEGFAI-----PQNLESFIN--- 172 (409)
T ss_dssp HHHHHHHC--CTTCEEEEEESCCTHHHHHHHHH-TC----------EEEEEECCG--GGTSCC-----CTTGGGGCC---
T ss_pred HHHHHHhC--CCCCEEEEcCCCchhHHHHHHHc-CC----------EEEEeccCC--CCCCcc-----HHHHHHhhC---
Confidence 99999763 35688999999999876544322 11 122222210 001110 133444442
Q ss_pred CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCC-CCCEE--Eeecccc-
Q 013235 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIV--TMAKGIG- 327 (447)
Q Consensus 252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv-~pDiv--t~sK~lg- 327 (447)
.++++|+++..++++|.+. |++++++|.++|++||+++|+||+|+++.++| ..+.. ..++ ..|++ +++|.++
T Consensus 173 -~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~-~~~~~-~~~~~~~~i~~~s~sK~~g~ 248 (409)
T 2gb3_A 173 -ERTKGIVLSNPCNPTGVVY-GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG-EFASA-LSIESDKVVVIDSVSKKFSA 248 (409)
T ss_dssp -TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCG-GGSCCTTEEEEEESTTTTTC
T ss_pred -cCCeEEEECCCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEECcccccccCC-CCCCc-cccCCCCEEEEecchhccCC
Confidence 2677888888888888875 67899999999999999999999999998777 44443 1233 34766 6799998
Q ss_pred CCccccccccCH-HHHHhhcCCcccccCCCChHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE
Q 013235 328 NGIPLGAVVTTP-EIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--KDKLQNNAHVVGSYLKERLTALKDKYGIIGDV 404 (447)
Q Consensus 328 ~G~pigav~~~~-~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~--~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v 404 (447)
+|+|+|++++++ ++++.+.......+ +.|+++++++.++|+..+ -+++.++++++.+++.+.|+++ .+..+ ..
T Consensus 249 ~G~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~-~~ 324 (409)
T 2gb3_A 249 CGARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH--GLKRF-TK 324 (409)
T ss_dssp GGGCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT--TCCCB-CC
T ss_pred ccceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc--Cceee-eC
Confidence 799999999998 89887765433444 889999999988885321 1234566667777777777665 33321 12
Q ss_pred eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC------Cceeec
Q 013235 405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI------CALFFS 445 (447)
Q Consensus 405 rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~------Gvlv~~ 445 (447)
+..|+++++++. . . ...++.+.|+++ ||++.+
T Consensus 325 ~~~~~~~~~~~~-~-----~---~~~~l~~~l~~~~~~~~~gi~v~~ 362 (409)
T 2gb3_A 325 PSGAFYITAELP-V-----E---DAEEFARWMLTDFNMDGETTMVAP 362 (409)
T ss_dssp CSBSSEEEEECS-S-----S---CHHHHHHHHHHSCCBTTEEEECEE
T ss_pred CCeeEEEEEEeC-C-----C---CHHHHHHHHHhccccccCcEEEeC
Confidence 344777777763 1 0 135688889887 999864
No 100
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.92 E-value=3e-24 Score=213.84 Aligned_cols=297 Identities=12% Similarity=0.089 Sum_probs=201.9
Q ss_pred CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHH
Q 013235 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA 178 (447)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~a 178 (447)
+.+|||.+|.. +++ .+|+|.+|+.++++.. ..|+++...+++++|+++++.+.++|++++||++|++.+++..
T Consensus 30 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l 102 (365)
T 3get_A 30 KEVIKLASNEN--PFG-TPPKAIECLRQNANKA----HLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSK 102 (365)
T ss_dssp SCCEECSSCCC--TTC-SCHHHHHHHHHHGGGT----TSCCCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH
T ss_pred CceEEecCCCC--CCC-CCHHHHHHHHHHHHhh----ccCCCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHH
Confidence 67999998876 456 7899999999988753 2344444468999999998766788999999999999999865
Q ss_pred HhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEE
Q 013235 179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF 258 (447)
Q Consensus 179 r~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aav 258 (447)
. .++++|++..++|++....+... |...+..|. .. .+. --.+++++.+. .++.+|
T Consensus 103 ~--~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~-~~----~~~-~d~~~l~~~l~----~~~~~v 157 (365)
T 3get_A 103 L--NSKNAFLQAGVTFAMYEIYAKQC-------------GAKCYKTQS-IT----HNL-DEFKKLYETHK----DEIKLI 157 (365)
T ss_dssp C--CTTCEEEECSSCCTHHHHHHHHH-------------TCEEEECSS-SS----CCH-HHHHHHHHHTT----TTEEEE
T ss_pred h--CCCCEEEEeCCChHHHHHHHHHc-------------CCEEEEEec-CC----CCC-CCHHHHHHHhC----CCCCEE
Confidence 3 35688999999998765544332 222222222 00 111 12566666664 367777
Q ss_pred EEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccc--cCCCcc-ccc---ccCCCCCEEEeecccc-CCcc
Q 013235 259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR--TGSHFW-GFE---AHGVVPDIVTMAKGIG-NGIP 331 (447)
Q Consensus 259 i~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr--~G~~~~-~~~---~~gv~pDivt~sK~lg-~G~p 331 (447)
+++..++++|.+. +.+.+++|.++| ++|+++|+||+|++|.. .|.... ... .++....+.+++|.++ +|++
T Consensus 158 ~~~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 235 (365)
T 3get_A 158 FLCLPNNPLGECL-DASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLR 235 (365)
T ss_dssp EEESSCTTTCCCC-CHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTC
T ss_pred EEcCCCCCCCCCc-CHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchh
Confidence 7776677788776 455566666666 67999999999998762 221111 112 2233334447899998 7999
Q ss_pred ccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeeccee
Q 013235 332 LGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ-KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL 410 (447)
Q Consensus 332 igav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~-~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~ 410 (447)
+|++++++++++.+... ..+|+.|+++++++.++|+..+ -++..++.+++.+++.+.|++ ++ +..+++.|.+
T Consensus 236 ~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~----~g-~~~~~~~~~~ 308 (365)
T 3get_A 236 IGYGIANANIISAFYKL--RAPFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKK----HN-IKIIDSYTNF 308 (365)
T ss_dssp CEEEEECHHHHHHHHHH--SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH----TT-CEECCCSSSE
T ss_pred eEEEEcCHHHHHHHHHh--cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh----CC-CEECCCCCeE
Confidence 99999999999887642 2457799999999999886321 012334444444455554444 33 3345778888
Q ss_pred EEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 411 LGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 411 ~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+++++... ...++.+.|+++||++.+
T Consensus 309 ~~~~~~~~---------~~~~~~~~l~~~gi~v~~ 334 (365)
T 3get_A 309 ITYFFDEK---------NSTDLSEKLLKKGIIIRN 334 (365)
T ss_dssp EEEECSSS---------CHHHHHHHHHTTTEECEE
T ss_pred EEEECCCC---------CHHHHHHHHHHCCEEEEE
Confidence 88877321 146788999999999864
No 101
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.92 E-value=3e-24 Score=216.99 Aligned_cols=303 Identities=15% Similarity=0.072 Sum_probs=204.1
Q ss_pred CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccc--ccccc-chHHHHHHHHHHHhC--C-CCCceEEEcCCHHHHH
Q 013235 98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS--TVLYL-NHAIADFAEALASKM--P-GNLKVVFFTNSGTEAN 171 (447)
Q Consensus 98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~--~~~~~-~~~~~elae~L~~~~--~-~~~~~v~~~~sGseA~ 171 (447)
|+.+|||.+|.. .++ .+|.|.+|+.++++...+. ...|. .....+|+++|++++ + ...++|++++|+++++
T Consensus 32 ~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al 108 (400)
T 3asa_A 32 QHTVINLSIGDT--TQP-LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDL 108 (400)
T ss_dssp TSCCEECSSCCC--CCC-CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHH
T ss_pred CCceEeccCCCC--CCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHH
Confidence 678999988875 344 6899999999998765321 12343 345678999999984 4 3567899999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235 172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT 251 (447)
Q Consensus 172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~ 251 (447)
+.++++. +++++|++.+++||+........ +.. .+..++.. ..+.+..| +++.
T Consensus 109 ~~~~~~~---~~gd~Vl~~~p~y~~~~~~~~~~-g~~---------~~~~~~~~--~~~~~~~~-------l~~~----- 161 (400)
T 3asa_A 109 FRLLSFF---GPNQTVAIQDPSYPAYLDIARLT-GAK---------EIIALPCL--QENAFFPE-------FPED----- 161 (400)
T ss_dssp HHHHHHH---CSSCEEEEEESCCHHHHHHHHHT-TCS---------EEEEEECC--GGGTTCCC-------CCTT-----
T ss_pred HHHHHHc---CCCCEEEECCCCcHHHHHHHHHc-CCc---------ceEecccc--hhcCcccC-------hhhc-----
Confidence 9876543 45688999999999876543322 111 02222221 11111111 1111
Q ss_pred CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCC----EEEeecccc
Q 013235 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPD----IVTMAKGIG 327 (447)
Q Consensus 252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pD----ivt~sK~lg 327 (447)
.++++|+++..++++|.+. +.+.+++|.++|+++|+++|+||+|++|++.|........++..+| +.++||.+|
T Consensus 162 -~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g 239 (400)
T 3asa_A 162 -THIDILCLCSPNNPTGTVL-NKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLG 239 (400)
T ss_dssp -CCCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGT
T ss_pred -cCccEEEEeCCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcC
Confidence 2456777766678888775 7889999999999999999999999999876621222222222233 558999998
Q ss_pred -CCccccccccCHHH-------HHhhcCCcccccC-CCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 013235 328 -NGIPLGAVVTTPEI-------AEVLTRRNYFNTF-GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY 398 (447)
Q Consensus 328 -~G~pigav~~~~~i-------~~~l~~~~~~~T~-~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~ 398 (447)
+|+|+|++++++++ ++.+....+..+| +.|+++++++.++|+...-+++.++++++.++|.+.|+++
T Consensus 240 ~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~---- 315 (400)
T 3asa_A 240 FAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT---- 315 (400)
T ss_dssp TTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT----
T ss_pred CcchheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC----
Confidence 89999999999887 5544322233455 5899999999998876434467788888888888888764
Q ss_pred CCeeeEee-cceeEEEE-EeeCCCCCCCCHHHHHHHHHHHHh-CCceeec
Q 013235 399 GIIGDVRG-RGFLLGVE-FVTDRQLKTPAKAETLYIMDKMKG-ICALFFS 445 (447)
Q Consensus 399 ~~i~~vrg-~Gl~~gie-l~~~~~~~~p~~~~~~~~~~~l~~-~Gvlv~~ 445 (447)
+ +.-+.+ .|++++++ +.+.. . ..++.+.|++ +||++.+
T Consensus 316 g-~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~l~~~~gv~v~~ 356 (400)
T 3asa_A 316 G-FEVFGGEHAPYLWVKPTQANI----S----DRDLFDFFLREYHIAITP 356 (400)
T ss_dssp T-CEEEECSSSSEEEEECCCTTC----C----TTTHHHHHHHHHSEECEE
T ss_pred C-CeeeCCCCceEEEEeccCCCC----C----HHHHHHHHHHhCCEEEeC
Confidence 2 222333 47888888 52210 0 1347777775 4999864
No 102
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.92 E-value=2.6e-24 Score=218.24 Aligned_cols=314 Identities=12% Similarity=0.052 Sum_probs=197.3
Q ss_pred CeEEEecCCcccc-cCCCCCHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhCC------------CCCceEEEc
Q 013235 99 RRYLDAFGGIATV-CCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKMP------------GNLKVVFFT 164 (447)
Q Consensus 99 ~~ylD~~~g~~~~-~lGh~~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~~------------~~~~~v~~~ 164 (447)
+.+|||..|.... +-.+.+|.|.+|+.++++... ...|. .....++++.|++++. ...++|+++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~--~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~ 110 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQE--CNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLC 110 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTC--SSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEE
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCc--cCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEe
Confidence 5689998887542 113478999999999987632 12232 2234455555555543 346789999
Q ss_pred CCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHH
Q 013235 165 NSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQ 244 (447)
Q Consensus 165 ~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le 244 (447)
+||++|++.+++... .++++|++.+++||+....+... |...+..|......|..| .++|+
T Consensus 111 ~g~~~al~~~~~~l~--~~gd~vl~~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~ 171 (416)
T 1bw0_A 111 SGGSHGILMAITAIC--DAGDYALVPQPGFPHYETVCKAY-------------GIGMHFYNCRPENDWEAD----LDEIR 171 (416)
T ss_dssp SHHHHHHHHHHHHHC--CTTCEEEEEESCCTHHHHHHHHT-------------TCEEEEEEEEGGGTTEEC----HHHHH
T ss_pred CChHHHHHHHHHHhC--CCCCEEEEcCCCcHhHHHHHHHc-------------CcEEEEeecCcccCCCCC----HHHHH
Confidence 999999999998763 25688999999999876544322 121121111111112234 56677
Q ss_pred HHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC----CcccccccCCCCCE-
Q 013235 245 DLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS----HFWGFEAHGVVPDI- 319 (447)
Q Consensus 245 ~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~----~~~~~~~~gv~pDi- 319 (447)
+.+. ++..+.++++| ++++|.+. +++++++|.++|++||+++|+||+|++|.++|. .+..+..++..+++
T Consensus 172 ~~l~---~~~~~v~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i 246 (416)
T 1bw0_A 172 RLKD---DKTKLLIVTNP-SNPCGSNF-SRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRV 246 (416)
T ss_dssp HHCC---TTEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEE
T ss_pred HHhc---cCCeEEEEeCC-CCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEE
Confidence 7664 22345566666 66777764 788999999999999999999999999877763 22222222222233
Q ss_pred --EEeecccc-CCccccccccCHH--HHHhhcC---CcccccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHH
Q 013235 320 --VTMAKGIG-NGIPLGAVVTTPE--IAEVLTR---RNYFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLK 388 (447)
Q Consensus 320 --vt~sK~lg-~G~pigav~~~~~--i~~~l~~---~~~~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~ 388 (447)
.+++|.++ +|+|+|+++++++ +++.+.. ..+..+++.|+++++++.++|+.+.++ ++.++++++.+++.
T Consensus 247 ~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 326 (416)
T 1bw0_A 247 ILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLY 326 (416)
T ss_dssp EEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 36899986 6899999998663 4333321 112257889999999999999743222 33445555555555
Q ss_pred HHHHHHHHhcCCeeeEe-ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235 389 ERLTALKDKYGIIGDVR-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS 445 (447)
Q Consensus 389 ~~L~~l~~~~~~i~~vr-g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~ 445 (447)
+.|++ ++.+..++ ..|+++++++.... .+......++++.|+ ++||++.+
T Consensus 327 ~~L~~----~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~gi~v~~ 378 (416)
T 1bw0_A 327 NHIGE----CIGLAPTMPRGAMYLMSRIDLEK---YRDIKTDVEFFEKLLEEENVQVLP 378 (416)
T ss_dssp HHHTT----STTEEECCCCBTTEEEEEECGGG---BSSCCSHHHHHHHHHHHHCEECEE
T ss_pred HHHHh----CCCCcccCCCeeEEEEEeCCHHH---cCCCCCHHHHHHHHHHHCCEEEec
Confidence 55543 33343333 34788888874210 000011356778875 78999875
No 103
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.91 E-value=3.7e-24 Score=213.19 Aligned_cols=297 Identities=15% Similarity=0.081 Sum_probs=204.6
Q ss_pred CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc-------cccccccchHHHHHHHH-HHHhCCCCCceEEEcCCHHH
Q 013235 98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-------HSTVLYLNHAIADFAEA-LASKMPGNLKVVFFTNSGTE 169 (447)
Q Consensus 98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~-------~~~~~~~~~~~~elae~-L~~~~~~~~~~v~~~~sGse 169 (447)
+-.|||+.+ +.++.+|++.+|+.+++.... +....++.+...+++++ |+++++.+ .++|++||++
T Consensus 8 ~~i~ld~~~-----~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~--~v~~~~g~t~ 80 (371)
T 2e7j_A 8 DFINIDPLQ-----TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGARE 80 (371)
T ss_dssp CCEECCHHH-----HTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS--EEEEESSHHH
T ss_pred CcEEecccc-----cCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC--EEEEeCChHH
Confidence 346777643 345688999999999887642 11223356677899999 99999764 8999999999
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235 170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF 249 (447)
Q Consensus 170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~ 249 (447)
|++.+++.+. .++++|++.+++||+........ |...+..|.+....+.-| .++|++.+.+
T Consensus 81 a~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~l~~ 141 (371)
T 2e7j_A 81 AKFAVMHSLA--KKDAWVVMDENCHYSSYVAAERA-------------GLNIALVPKTDYPDYAIT----PENFAQTIEE 141 (371)
T ss_dssp HHHHHHHHHC--CTTCEEEEETTCCHHHHHHHHHT-------------TCEEEEECCCCTTTCCCC----HHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCEEEEccCcchHHHHHHHHc-------------CCeEEEeecccCCCCCcC----HHHHHHHHHh
Confidence 9999999773 36689999999999877653221 222222221011112234 5677777764
Q ss_pred cCC-CCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE--eeccc
Q 013235 250 GTS-GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGI 326 (447)
Q Consensus 250 ~~~-~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~l 326 (447)
... +++++|++++.++++|.+.+ +++|.++|++||+++|+||+|+.+ ..+ +....++ +|+++ ++|.+
T Consensus 142 ~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~-~~~---~~~~~~~--~di~~~s~sK~~ 211 (371)
T 2e7j_A 142 TKKRGEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIG-RMP---VSLKEIG--ADFIVGSGHKSM 211 (371)
T ss_dssp HTTTSCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTTBT-TBC---CCHHHHT--CSEEEEEHHHHS
T ss_pred hcccCCeEEEEEECCCCCCcccCC----HHHHHHHHHHcCCeEEEECccccC-CCC---CChhhcC--CCEEEecCCcCC
Confidence 211 36788999999999999886 799999999999999999999753 322 1223333 67775 58999
Q ss_pred cCCccccccccCHHHHHh-hcCCcc--cc-----cCCCChHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHHHHHHH
Q 013235 327 GNGIPLGAVVTTPEIAEV-LTRRNY--FN-----TFGGNPVCTAAGHAVLKVIQKDKLQNNA--HVVGSYLKERLTALKD 396 (447)
Q Consensus 327 g~G~pigav~~~~~i~~~-l~~~~~--~~-----T~~~np~a~aaala~L~~i~~~~l~~~~--~~~g~~l~~~L~~l~~ 396 (447)
++|.++|++++++++++. +..... .. ++..|+.+++++.++++.+++ ++.+++ +++.+++.+.|+++
T Consensus 212 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~~-- 288 (371)
T 2e7j_A 212 AASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE-RIKRWDEEVEKARRFAAEMEKL-- 288 (371)
T ss_dssp SCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGGHHHHHHHHHHHHHHHHHT--
T ss_pred CCCCCcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc--
Confidence 988899999999998776 654322 22 566788888888899988766 677788 88889998888876
Q ss_pred hcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235 397 KYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF 444 (447)
Q Consensus 397 ~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~ 444 (447)
.+..+...++.|.++++++. ...++.+.|.++||++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~gi~~~ 325 (371)
T 2e7j_A 289 GIKQLGDNPHNHDLMFFHAE-----------VLYEISKKAKGGRFFLY 325 (371)
T ss_dssp TCEEESSSSCCSSEEEEECH-----------HHHHHHHHSSSGGGHHH
T ss_pred CcEEecCCCccCceEEEECC-----------CHHHHHHHHHHCCEEEE
Confidence 33222211114778888762 24568888888998874
No 104
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.91 E-value=8.5e-23 Score=205.44 Aligned_cols=302 Identities=12% Similarity=0.017 Sum_probs=202.2
Q ss_pred CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc---ccc-c---cccchHHHHHHHHHHHhCCC-CCceEEEcCCHH
Q 013235 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---HST-V---LYLNHAIADFAEALASKMPG-NLKVVFFTNSGT 168 (447)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~---~~~-~---~~~~~~~~elae~L~~~~~~-~~~~v~~~~sGs 168 (447)
+|+.+++|..+.. |+.+|.|.+|+.++++... +.. . ....+...+++++|+++++. +.+.++|++||+
T Consensus 20 ~g~~~i~l~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t 95 (406)
T 1kmj_A 20 NGLPLAYLDSAAS----AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTT 95 (406)
T ss_dssp TTEECEECCTTTC----CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHH
T ss_pred CCCceEEecCCcc----CCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChh
Confidence 4544444433332 4689999999999998752 111 1 11356678999999999976 567899999999
Q ss_pred HHHHHHHHHHHh--hcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHH
Q 013235 169 EANELAIMMARL--YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL 246 (447)
Q Consensus 169 eA~e~Aik~ar~--~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~ 246 (447)
+|++.+++.++. ..++++|++.+++|||.......+.... ...+..++.+. .+..| .++|++.
T Consensus 96 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~----~~~~d----~~~l~~~ 160 (406)
T 1kmj_A 96 EGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARV-------GAELRVIPLNP----DGTLQ----LETLPTL 160 (406)
T ss_dssp HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHH-------TCEEEEECBCT----TSCBC----GGGHHHH
T ss_pred HHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhC-------CCEEEEEecCC----CCCcC----HHHHHHH
Confidence 999999998753 3466899999999998764322111000 00122232221 12223 4566666
Q ss_pred HHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE--eec
Q 013235 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAK 324 (447)
Q Consensus 247 i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK 324 (447)
+. +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+. |... +.... ..+|+++ ++|
T Consensus 161 l~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~-g~~~---~~~~~--~~~d~~~~s~~K 226 (406)
T 1kmj_A 161 FD----EKTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQAV-MHHP---VDVQA--LDCDFYVFSGHK 226 (406)
T ss_dssp CC----TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTT-TTSC---CCHHH--HTCSEEEEEGGG
T ss_pred hc----cCCeEEEEeCCCccccCcCC----HHHHHHHHHHcCCEEEEEchhhc-CCCC---Ccccc--cCCCEEEEEchh
Confidence 54 26889999999999999886 99999999999999999999974 3321 12222 3478874 889
Q ss_pred cccCCccccccccCHHHHHhhcCCccc---------------------ccCCCChHHHHHHH-HHHHHHhhh---hHHHH
Q 013235 325 GIGNGIPLGAVVTTPEIAEVLTRRNYF---------------------NTFGGNPVCTAAGH-AVLKVIQKD---KLQNN 379 (447)
Q Consensus 325 ~lg~G~pigav~~~~~i~~~l~~~~~~---------------------~T~~~np~a~aaal-a~L~~i~~~---~l~~~ 379 (447)
.+|. ..+|++++++++++.+...... .+.+.+++++++++ ++|+.++++ ++.++
T Consensus 227 ~~g~-~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~ 305 (406)
T 1kmj_A 227 LYGP-TGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEY 305 (406)
T ss_dssp TTSC-TTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccCC-CCcEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 9852 2289999999999887653221 22345677777666 788887653 45666
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeeeEee--cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 380 AHVVGSYLKERLTALKDKYGIIGDVRG--RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 380 ~~~~g~~l~~~L~~l~~~~~~i~~vrg--~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
.+++.+++.+.|+++ +.+.-+.. .|.++.+.+. + .+ ..++.+.|.++||++.+
T Consensus 306 ~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~-~-----~~---~~~~~~~l~~~gi~v~~ 360 (406)
T 1kmj_A 306 EQNLMHYALSQLESV----PDLTLYGPQNRLGVIAFNLG-K-----HH---AYDVGSFLDNYGIAVRT 360 (406)
T ss_dssp HHHHHHHHHHHHTTS----TTEEEESCTTCCSEEEEEET-T-----CC---HHHHHHHHHHTTEECEE
T ss_pred HHHHHHHHHHHHhcC----CCeEEecCCCcCCEEEEEEC-C-----CC---HHHHHHHHhhCCcEEEe
Confidence 777777777776653 22333333 6888888762 1 01 34678889999999864
No 105
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.91 E-value=1e-22 Score=205.90 Aligned_cols=304 Identities=13% Similarity=0.093 Sum_probs=206.8
Q ss_pred cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc---c-cccccc---chHHHHHHHHHHHhCCC-CCceEEEcCCH
Q 013235 96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ---H-STVLYL---NHAIADFAEALASKMPG-NLKVVFFTNSG 167 (447)
Q Consensus 96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~---~-~~~~~~---~~~~~elae~L~~~~~~-~~~~v~~~~sG 167 (447)
.+|+.+++|..+.. ++.+|.|.+|+.++++... | ....|. .+...+++++|+++++. +.+++++++||
T Consensus 24 ~~g~~~i~l~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~ 99 (420)
T 1t3i_A 24 INGHPLVYLDNAAT----SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNA 99 (420)
T ss_dssp ETTEECEECBTTTC----CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSH
T ss_pred cCCCceEEecCCcc----CCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCCh
Confidence 36778888876655 4688999999999998742 1 112232 35678999999999976 56789999999
Q ss_pred HHHHHHHHHHHHh--hcCCCeEEEEcCCcccCchhhh---hccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHH
Q 013235 168 TEANELAIMMARL--YTGCNDIISLRNAYHGNAAGTM---GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKD 242 (447)
Q Consensus 168 seA~e~Aik~ar~--~t~~~~ii~~~~~yHG~~~~~~---~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~ 242 (447)
++|++.+++.++. ..++++|++.+++||+...... ...+. .+..++.+. .+..| .++
T Consensus 100 t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~----------~~~~v~~~~----~~~~d----~~~ 161 (420)
T 1t3i_A 100 TEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGA----------VLKFVQLDE----QESFD----LEH 161 (420)
T ss_dssp HHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCC----------EEEEECBCT----TSSBC----HHH
T ss_pred HHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCc----------EEEEeccCC----CCCcC----HHH
Confidence 9999999998742 3456889999999998642211 11110 122233221 12234 566
Q ss_pred HHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEe
Q 013235 243 VQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM 322 (447)
Q Consensus 243 le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~ 322 (447)
|++.+. +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ +|... +....++ +|++++
T Consensus 162 l~~~l~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~---~~~~~~~--~di~~~ 227 (420)
T 1t3i_A 162 FKTLLS----EKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHYP---LDVQLID--CDWLVA 227 (420)
T ss_dssp HHHHCC----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC---CCHHHHT--CSEEEE
T ss_pred HHHhhC----CCceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhc-cCCcc---CchhhcC--CCEEEE
Confidence 777664 26889999999999999886 9999999999999999999997 43221 1233333 799987
Q ss_pred e--ccccCCccccccccCHHHHHhhcCCccc--------------------ccCCCChHHHHHHHH-HHHHHhh---hhH
Q 013235 323 A--KGIGNGIPLGAVVTTPEIAEVLTRRNYF--------------------NTFGGNPVCTAAGHA-VLKVIQK---DKL 376 (447)
Q Consensus 323 s--K~lg~G~pigav~~~~~i~~~l~~~~~~--------------------~T~~~np~a~aaala-~L~~i~~---~~l 376 (447)
| |.++ +..+|++++++++++.+...... .+++.+++.++++++ +|+.+++ +++
T Consensus 228 s~sK~~~-~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~ 306 (420)
T 1t3i_A 228 SGHKMCA-PTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENI 306 (420)
T ss_dssp EGGGTTS-CTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred ehhhhcC-CCceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHH
Confidence 7 9655 33489999999999887653211 123567777777766 7887765 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeeeEe---ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235 377 QNNAHVVGSYLKERLTALKDKYGIIGDVR---GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ 446 (447)
Q Consensus 377 ~~~~~~~g~~l~~~L~~l~~~~~~i~~vr---g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~ 446 (447)
.++.+++.+++.+.|+++. .+..+...+ +.|.++.+.+.. . ...++.+.|.++||++.+.
T Consensus 307 ~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~l~~~gi~v~~~ 369 (420)
T 1t3i_A 307 HNYEVELTHYLWQGLGQIP-QLRLYGPNPKHGDRAALASFNVAG------L---HASDVATMVDQDGIAIRSG 369 (420)
T ss_dssp HHHHHHHHHHHHHHHHTCT-TEEEESCCGGGSCBCSEEEEEETT------B---CHHHHHHHHHTTTEECBCS
T ss_pred HHHHHHHHHHHHHHHHhCC-CeEEeCCCccccccCCEEEEEECC------C---CHHHHHHHHHHCCeEEeec
Confidence 6777778888887776641 111111111 248888887631 0 1346788899999998753
No 106
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.91 E-value=2.4e-22 Score=201.10 Aligned_cols=289 Identities=17% Similarity=0.071 Sum_probs=193.3
Q ss_pred CCCHHHHHHHHHHHHhcccccccc--cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh-----------
Q 013235 115 HCHPYVVDSIVNQIKRIQHSTVLY--LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY----------- 181 (447)
Q Consensus 115 h~~p~v~~A~~~~l~~~~~~~~~~--~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~----------- 181 (447)
..+|++.+|+.+++.........+ ..+...+++++|++.++.+.++++|++||++|++.+++.++..
T Consensus 41 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~ 120 (397)
T 3f9t_A 41 NVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSK 120 (397)
T ss_dssp CCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 467999999999887642211222 2455668999999999877788999999999999999988764
Q ss_pred cCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEc
Q 013235 182 TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE 261 (447)
Q Consensus 182 t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~E 261 (447)
++++.|++.+++|++....+... +. .+..++... .+..| .++|++.+... ++++|+++
T Consensus 121 ~~gd~vl~~~~~~~~~~~~~~~~-g~----------~~~~v~~~~----~~~~d----~~~l~~~i~~~---~~~~v~~~ 178 (397)
T 3f9t_A 121 NEHPKIIVPITAHFSFEKGREMM-DL----------EYIYAPIKE----DYTID----EKFVKDAVEDY---DVDGIIGI 178 (397)
T ss_dssp CSSCEEEEETTCCTHHHHHHHHH-TC----------EEEEECBCT----TSSBC----HHHHHHHHHHS---CCCEEEEE
T ss_pred CCCeEEEECCcchhHHHHHHHHc-Cc----------eeEEEeeCC----CCcCC----HHHHHHHHhhc---CCeEEEEE
Confidence 24678999999988755443322 11 122333221 12224 67788877642 45677777
Q ss_pred cccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCcc--ccCC--------CcccccccCCCCCEEEeeccccCCcc
Q 013235 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA--RTGS--------HFWGFEAHGVVPDIVTMAKGIGNGIP 331 (447)
Q Consensus 262 pi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfg--r~G~--------~~~~~~~~gv~pDivt~sK~lg~G~p 331 (447)
+.++++|.+.+ +++|.++|++||+++|+||+|+++. .+|. ..+.++. ++.+.+.+++|.+++|++
T Consensus 179 ~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~ 253 (397)
T 3f9t_A 179 AGTTELGTIDN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIP 253 (397)
T ss_dssp BSCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSS
T ss_pred CCCCCCCCCCC----HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCC
Confidence 77888888865 9999999999999999999998753 2331 0233334 554444567798888889
Q ss_pred ccccccCHH-HHHhhcC-Ccc----------cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 013235 332 LGAVVTTPE-IAEVLTR-RNY----------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG 399 (447)
Q Consensus 332 igav~~~~~-i~~~l~~-~~~----------~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~ 399 (447)
+|+++++++ +.+.+.. ..+ .++.+.+++++.++++.+....-+++.++.+++.+++.+.|+++ .+.
T Consensus 254 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~ 331 (397)
T 3f9t_A 254 SGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN--NFK 331 (397)
T ss_dssp CEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCC
T ss_pred ceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC--CCE
Confidence 999887654 4443321 111 12223356667666666654333557778888888888888876 444
Q ss_pred CeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 400 IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 400 ~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
.+.. ..+.++.+.+. . ..++.+.|+++||++.+
T Consensus 332 ~~~~--~~~~~~~~~~~--------~---~~~~~~~l~~~gi~v~~ 364 (397)
T 3f9t_A 332 PVIE--PILNIVAIEDE--------D---YKEVCKKLRDRGIYVSV 364 (397)
T ss_dssp BSSC--CSSSEEEEECT--------T---HHHHHHHHHHTTCBCEE
T ss_pred EEcC--CCccEEEEEeC--------C---HHHHHHHHHhCCeEEec
Confidence 3332 34556655541 1 35788999999999864
No 107
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.90 E-value=8.1e-23 Score=205.39 Aligned_cols=295 Identities=16% Similarity=0.083 Sum_probs=203.9
Q ss_pred CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCc-eEEEcCCHHHHHHHHH
Q 013235 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK-VVFFTNSGTEANELAI 175 (447)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~-~v~~~~sGseA~e~Ai 175 (447)
+++.|+|..+ -++.+|+|.+|+.+++.. +... ...+...+++++|++.++.+.+ +++|++||++|++.++
T Consensus 32 ~~~~~l~~~~------~~~~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~ 102 (393)
T 1vjo_A 32 VPSRLLLGPG------PSNAHPSVLQAMNVSPVG--HLDP-AFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATI 102 (393)
T ss_dssp CCCCEECSSS------CCCCCHHHHHHHSSCCCC--TTSH-HHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHH
T ss_pred CccceeccCC------CCCCCHHHHHHHhccccc--ccCH-HHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHH
Confidence 4467888543 246889999998876643 1111 1245677899999998876656 8999999999999999
Q ss_pred HHHHhhcCCCeEEEEcCCcccC--chhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 013235 176 MMARLYTGCNDIISLRNAYHGN--AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG 253 (447)
Q Consensus 176 k~ar~~t~~~~ii~~~~~yHG~--~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~ 253 (447)
+.+. .++++|++.+++||+. ...+... + ..+..++.+. .+..| .++|++.+...
T Consensus 103 ~~~~--~~gd~Vl~~~~~~~~~~~~~~~~~~-g----------~~~~~v~~~~----~~~~d----~~~l~~~l~~~--- 158 (393)
T 1vjo_A 103 ANAV--EPGDVVLIGVAGYFGNRLVDMAGRY-G----------ADVRTISKPW----GEVFS----LEELRTALETH--- 158 (393)
T ss_dssp HHHC--CTTCEEEEEESSHHHHHHHHHHHHT-T----------CEEEEEECCT----TCCCC----HHHHHHHHHHH---
T ss_pred Hhcc--CCCCEEEEEcCChhHHHHHHHHHHc-C----------CceEEEecCC----CCCCC----HHHHHHHHhhC---
Confidence 9773 3667899999999983 2221111 1 0122333221 12234 56777777632
Q ss_pred CeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCcc
Q 013235 254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIP 331 (447)
Q Consensus 254 ~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~p 331 (447)
++++|++++.++++|.+.+ +++|.++|+++|+++|+||+|+ ||... .......+|+++.| |.++++.+
T Consensus 159 ~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~-----~~~~~~~~di~~~s~sK~l~~~~~ 228 (393)
T 1vjo_A 159 RPAILALVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGVP-----IFLDAWGVDLAYSCSQKGLGCSPG 228 (393)
T ss_dssp CCSEEEEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTSC-----CCTTTTTCSEEECCSSSTTCSCSS
T ss_pred CceEEEEeccCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-ccCcC-----CcccccCccEEEEcCcccccCCCc
Confidence 4568888999999998875 8899999999999999999998 76432 12223467999866 99987669
Q ss_pred ccccccCHHHHHhhcCC-----cc--------------cccC-CCChHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHH
Q 013235 332 LGAVVTTPEIAEVLTRR-----NY--------------FNTF-GGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLK 388 (447)
Q Consensus 332 igav~~~~~i~~~l~~~-----~~--------------~~T~-~~np~a~aaala~L~~i~~---~~l~~~~~~~g~~l~ 388 (447)
+|++++++++++.+... .. ..++ +.|+++++++.++|+.+.+ +++.++++++.+++.
T Consensus 229 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~ 308 (393)
T 1vjo_A 229 ASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLW 308 (393)
T ss_dssp CEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 99999999998877321 11 2234 6789999999999998754 356788888889999
Q ss_pred HHHHHHHHhcCCeeeEee--cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235 389 ERLTALKDKYGIIGDVRG--RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS 445 (447)
Q Consensus 389 ~~L~~l~~~~~~i~~vrg--~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~ 445 (447)
+.|+++ .+..... .+ .+.++.+.+... ....++.+.|+++ ||++.+
T Consensus 309 ~~L~~~--g~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~gi~v~~ 357 (393)
T 1vjo_A 309 ERLEDI--GLSLHVE-KEYRLPTLTTVCIPDG--------VDGKAVARRLLNEHNIEVGG 357 (393)
T ss_dssp HHHHHT--TCCBSSC-GGGBCSSEEEEECCTT--------CCHHHHHHHHHHHHCEECEE
T ss_pred HHHHHc--CCcccCC-ccccCCcEEEEEcCCC--------CCHHHHHHHHHhhCCEEEec
Confidence 888875 3433221 12 235566665211 0145788999988 999864
No 108
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.90 E-value=2.7e-23 Score=212.03 Aligned_cols=314 Identities=12% Similarity=0.078 Sum_probs=202.5
Q ss_pred ecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc--cccccc-chHHHHHHHHHHHhC----CCCCceEEEcCCH
Q 013235 95 DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH--STVLYL-NHAIADFAEALASKM----PGNLKVVFFTNSG 167 (447)
Q Consensus 95 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~--~~~~~~-~~~~~elae~L~~~~----~~~~~~v~~~~sG 167 (447)
+.+|+.+|||..|... + ..+|.|.+|+.++++.... ....|. .....+|.++|++++ +...+.|+|++++
T Consensus 52 ~~~~~~~i~l~~~~~~--~-~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~ 128 (432)
T 3ei9_A 52 KYPDAQVISLGIGDTT--E-PIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGA 128 (432)
T ss_dssp HCTTCCCEECSSCCCC--S-CCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCH
T ss_pred cCCCCCeEEccCCCCC--C-CCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCCh
Confidence 4467899999988664 2 4789999999999986532 122333 334567777777764 5566789999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc-CCCeEeecCCCCcCCCCCCChHHHHHHHHHH
Q 013235 168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV-QTGVHHALNPDPYRGVFGADGEMYAKDVQDL 246 (447)
Q Consensus 168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~-~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~ 246 (447)
++++..+..+ ..+++.|++.+++||+....+........+..... ...+..++... ...+..| +++
T Consensus 129 ~~al~~l~~l---~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-------l~~- 195 (432)
T 3ei9_A 129 KCDISRLQVM---FGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTP--ENGFFPD-------LST- 195 (432)
T ss_dssp HHHHHHHHHH---HCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCG--GGTTSCC-------GGG-
T ss_pred HHHHHHHHHH---cCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCc--ccCCcCC-------hhh-
Confidence 9999875333 23678899999999998776654433221111000 01233333211 1111111 221
Q ss_pred HHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc----CCCCCEEEe
Q 013235 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH----GVVPDIVTM 322 (447)
Q Consensus 247 i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~----gv~pDivt~ 322 (447)
.+ ++.+|+++..++++|.+. +.+.+++|.++|++||+++|+||+|++|...+ ...++..+ +....+.++
T Consensus 196 ----~~-~~~~v~l~~p~NPtG~~~-~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~~~i~~~S~ 268 (432)
T 3ei9_A 196 ----VG-RTDIIFFCSPNNPTGAAA-TREQLTQLVEFAKKNGSIIVYDSAYAMYMSDD-NPRSIFEIPGAEEVAMETASF 268 (432)
T ss_dssp ----CC-CCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSS-CCSSGGGSTTGGGTEEEEEES
T ss_pred ----CC-CCCEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCcEEEEccchHhhccCC-CCCChhhcCCCCCeEEEEecc
Confidence 12 344555555577778765 67789999999999999999999999987665 33333222 222335579
Q ss_pred ecccc-CCccccccccCHHH--------HHhhcCCcccccCCCChHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHH
Q 013235 323 AKGIG-NGIPLGAVVTTPEI--------AEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ---KDKLQNNAHVVGSYLKER 390 (447)
Q Consensus 323 sK~lg-~G~pigav~~~~~i--------~~~l~~~~~~~T~~~np~a~aaala~L~~i~---~~~l~~~~~~~g~~l~~~ 390 (447)
||.+| .|+|+|++++++++ .+.+.......+++.|+++++++.++|+... -+++.++++++.+++++.
T Consensus 269 SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (432)
T 3ei9_A 269 SNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDT 348 (432)
T ss_dssp HHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 89999999999887 5655433333456688999999988875211 134556666677777777
Q ss_pred HHHHHHhcCCeeeEe-ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235 391 LTALKDKYGIIGDVR-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS 445 (447)
Q Consensus 391 L~~l~~~~~~i~~vr-g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~ 445 (447)
|+++ + +..+. ..|.++++++... ...++++.|+++ ||++.+
T Consensus 349 L~~~----g-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ll~~~gv~v~~ 391 (432)
T 3ei9_A 349 FTSL----G-YDVYGGKNAPYVWVHFPNQ---------SSWDVFAEILEKTHVVTTP 391 (432)
T ss_dssp HHHT----T-CCEEECSSSSEEEEECTTS---------CHHHHHHHHHHHHCEECEE
T ss_pred HHHC----C-ceecCCCcceEEEEECCCC---------CHHHHHHHHHHHCCEEEeC
Confidence 6654 2 22233 3578888887411 134677777765 999864
No 109
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.90 E-value=1.1e-23 Score=214.24 Aligned_cols=314 Identities=14% Similarity=0.031 Sum_probs=199.4
Q ss_pred CeEEEecCCcccccCCCCC--HHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhCCC------CCc--eEEEcCCH
Q 013235 99 RRYLDAFGGIATVCCGHCH--PYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKMPG------NLK--VVFFTNSG 167 (447)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~--p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~~~------~~~--~v~~~~sG 167 (447)
..+|||..|++..+-|+.+ |.|.+|+.++++... ...|. .....++.+.+++++.. ..+ +|++++||
T Consensus 49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~ 126 (420)
T 4f4e_A 49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGL--PRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGG 126 (420)
T ss_dssp SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCC--CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH
T ss_pred CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCC--CCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCcc
Confidence 3579999987666677776 899999999887621 11222 23344555555555421 234 79999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235 168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247 (447)
Q Consensus 168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i 247 (447)
++|++.++++.....+++.|++.+++|++....+...+. .+..++..+. ..++.| .+++++.+
T Consensus 127 t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~-----------~~~~v~~~~~--~~~~~d----~~~l~~~l 189 (420)
T 4f4e_A 127 TGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGF-----------EVVAYPYYDA--KTNGVN----FDGMLAAL 189 (420)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTC-----------CEEEEECEET--TTTEEC----HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCC-----------eEEEeeeecc--ccCccC----HHHHHHHH
Confidence 999999988766566778999999999987655543321 1222322101 112224 67788887
Q ss_pred HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC-Ccccccc-cCCCCCEE---Ee
Q 013235 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGFEA-HGVVPDIV---TM 322 (447)
Q Consensus 248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~-~~~~~~~-~gv~pDiv---t~ 322 (447)
.+. +.+..+++++..++++|.+. +.+.+++|.++|++||+++|+||+|.+|++.+. ..++... .+..++++ +|
T Consensus 190 ~~~-~~~~~~v~i~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 267 (420)
T 4f4e_A 190 NGY-EPGTIVVLHACCHNPTGVDL-NDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSF 267 (420)
T ss_dssp TTC-CTTCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEEC
T ss_pred HhC-CCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeC
Confidence 644 23667888888888888765 778899999999999999999999999987642 1222221 12333333 68
Q ss_pred ecccc-CCcccccccc---CHHHHHhhcCC----cccccCCCChHHHHHHHHHHHHHh--------hhhHHHHHHHHHHH
Q 013235 323 AKGIG-NGIPLGAVVT---TPEIAEVLTRR----NYFNTFGGNPVCTAAGHAVLKVIQ--------KDKLQNNAHVVGSY 386 (447)
Q Consensus 323 sK~lg-~G~pigav~~---~~~i~~~l~~~----~~~~T~~~np~a~aaala~L~~i~--------~~~l~~~~~~~g~~ 386 (447)
||.++ .|+|+|++++ ++++++.+... ....+.+.++++++++.+.|+... -+++.++++++.++
T Consensus 268 SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (420)
T 4f4e_A 268 SKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNG 347 (420)
T ss_dssp TTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 6999999753 56665543211 112344456777777776665311 12345566666667
Q ss_pred HHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 387 LKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 387 l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+.+.|+++....+.....+..|+++++.+. ...+.+.|.++||++.+
T Consensus 348 l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~l~~~gI~v~~ 394 (420)
T 4f4e_A 348 LVERLKAAGIERDFSFINAQRGMFSYSGLT------------SAQVDRLREEFGIYAVS 394 (420)
T ss_dssp HHHHHHHTTCSSCCTHHHHSCSSEEECCCC------------HHHHHHHHHHHCEECCT
T ss_pred HHHHHHhcCCCCCceeECCCccEEEEeCCC------------HHHHHHHHHhCCEEecC
Confidence 777666652211221122445666665541 13456667788999865
No 110
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.90 E-value=2.4e-22 Score=200.97 Aligned_cols=296 Identities=15% Similarity=0.095 Sum_probs=204.4
Q ss_pred CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCC-CceEEEcCCHHHHHHHHHHH
Q 013235 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN-LKVVFFTNSGTEANELAIMM 177 (447)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~-~~~v~~~~sGseA~e~Aik~ 177 (447)
+.|+|..+ -++.+|++.+|+.+++.. +... ...+...++++.|++.++.+ .+.+++++||++|++.+++.
T Consensus 20 ~~~l~~~~------~~~~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~ 90 (386)
T 2dr1_A 20 KYKLFTAG------PVACFPEVLEIMKVQMFS--HRSK-EYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRN 90 (386)
T ss_dssp CSEECCSS------SCCCCHHHHHHTTSCCCC--TTSH-HHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHH
T ss_pred cceeecCC------CcCCcHHHHHHHhccccc--ccCH-HHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHH
Confidence 46777643 346789999988776542 2111 12566788999999988654 46799999999999999986
Q ss_pred HHhhcCCCeEEEEcCCcccCchh-hhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeE
Q 013235 178 ARLYTGCNDIISLRNAYHGNAAG-TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA 256 (447)
Q Consensus 178 ar~~t~~~~ii~~~~~yHG~~~~-~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a 256 (447)
.. .++++|++.+++||+.... .....+. .+..++.+. .+..| .++|++.+++. .+++
T Consensus 91 l~--~~gd~vl~~~~~~~~~~~~~~~~~~g~----------~~~~v~~~~----~~~~d----~~~l~~~l~~~--~~~~ 148 (386)
T 2dr1_A 91 GV--SKGGKVLVTIIGAFGKRYKEVVESNGR----------KAVVLEYEP----GKAVK----PEDLDDALRKN--PDVE 148 (386)
T ss_dssp HS--CTTCEEEEEESSHHHHHHHHHHHHTTC----------EEEEEECCT----TCCCC----HHHHHHHHHHC--TTCC
T ss_pred hh--cCCCeEEEEcCCchhHHHHHHHHHhCC----------ceEEEecCC----CCCCC----HHHHHHHHhcC--CCCc
Confidence 53 3568899999999984211 1111110 122233211 12234 56777777531 2577
Q ss_pred EEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccc
Q 013235 257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGA 334 (447)
Q Consensus 257 avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~piga 334 (447)
+|++++.++++|.+.+ +++|.++|++||+++|+||+|+. |... +.... ..+|++++| |.++++.++|+
T Consensus 149 ~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~-~~~~---~~~~~--~~~di~~~s~sK~~~~~~g~G~ 218 (386)
T 2dr1_A 149 AVTITYNETSTGVLNP----LPELAKVAKEHDKLVFVDAVSAM-GGAD---IKFDK--WGLDVVFSSSQKAFGVPPGLAI 218 (386)
T ss_dssp EEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTB-TTBC---CCTTT--TTCSEEEEETTSTTCCCSSCEE
T ss_pred EEEEEeecCCcchhCC----HHHHHHHHHHcCCeEEEEccccc-cCcc---ccccc--cCCcEEEEeccccccCCCceEE
Confidence 8888999999999876 99999999999999999999973 3221 22222 246999877 99997656899
Q ss_pred cccCHHHHHhhcCC------------------cccccCCCChHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHH
Q 013235 335 VVTTPEIAEVLTRR------------------NYFNTFGGNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLT 392 (447)
Q Consensus 335 v~~~~~i~~~l~~~------------------~~~~T~~~np~a~aaala~L~~i~~~----~l~~~~~~~g~~l~~~L~ 392 (447)
+++++++++.+... ....+++.|+++++++.++|+.++++ ++.++.+++.+++.+.|+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~ 298 (386)
T 2dr1_A 219 GAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVR 298 (386)
T ss_dssp EEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999988876321 12456678899999999999987654 577888888899988888
Q ss_pred HHHHhcCCeeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 393 ALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 393 ~l~~~~~~i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
++ .+.....- ...+.++++++... ....++.+.|+++||++.+
T Consensus 299 ~~--g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~v~~ 342 (386)
T 2dr1_A 299 EI--GLDILAEPGHESPTITAVLTPPG--------IKGDEVYEAMRKRGFELAK 342 (386)
T ss_dssp HT--TCCBSSCTTCBCSSEEEEECCTT--------CCHHHHHHHHHHTTEECEE
T ss_pred Hc--CCeeCcCccccCCceEEEEcCCC--------CCHHHHHHHHHHCCeEEec
Confidence 76 33322210 11477888877321 0145788999999999875
No 111
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.90 E-value=2.7e-22 Score=204.47 Aligned_cols=275 Identities=12% Similarity=0.075 Sum_probs=181.9
Q ss_pred chHHHHHHHHHHHhCCCC---------CceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCc
Q 013235 140 NHAIADFAEALASKMPGN---------LKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW 210 (447)
Q Consensus 140 ~~~~~elae~L~~~~~~~---------~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~ 210 (447)
.+...++++.+.+..+.. .++|++++|+++|++.+++... .+++.|++.+++|++....+...
T Consensus 81 ~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~------ 152 (425)
T 2r2n_A 81 PELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII--NPGDNVLLDEPAYSGTLQSLHPL------ 152 (425)
T ss_dssp HHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC--CTTCEEEEESSCCHHHHHHHGGG------
T ss_pred HHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC--CCCCEEEEeCCCcHHHHHHHHHc------
Confidence 344555566665544322 2589999999999999998763 25688999999999876544322
Q ss_pred cccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC--------CCCeEEEEEcc-ccCCCceeeCCCChHHHHH
Q 013235 211 KFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT--------SGHVAGFLSES-IQGVGGIIELAPGYLPAVY 281 (447)
Q Consensus 211 ~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~--------~~~~aavi~Ep-i~~~gG~~~~~~~~l~~l~ 281 (447)
|...+..|... .+.| .++|++.+.... ..++++|++.| .++++|.+. +.+.+++|.
T Consensus 153 -------g~~~~~v~~~~---~~~d----~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~ 217 (425)
T 2r2n_A 153 -------GCNIINVASDE---SGIV----PDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSL-TSERKKEIY 217 (425)
T ss_dssp -------TCEEEEECEET---TEEC----HHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCC-CHHHHHHHH
T ss_pred -------CCEEEEeCcCC---CCCC----HHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcC-CHHHHHHHH
Confidence 22222222111 1123 577888876321 13567887766 677788765 788999999
Q ss_pred HHHHHhCCEEEEeccccCccccCCC---cccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCCh
Q 013235 282 KSIKKAGGLCIADEVQAGFARTGSH---FWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNP 358 (447)
Q Consensus 282 ~l~~~~g~llI~DEv~tGfgr~G~~---~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np 358 (447)
++|++||+++|+||+|++|.+.|.. +..++..+....+.+|||.+++|+|+|++++++++++.+.......+++.|+
T Consensus 218 ~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~~ 297 (425)
T 2r2n_A 218 ELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVILHIQVSTLHPST 297 (425)
T ss_dssp HHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHHHHHHTTTCSSCH
T ss_pred HHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHHHHHHHhcCCCCH
Confidence 9999999999999999988776632 2222223333445589999999999999999999998887544556788999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---HHHHHHh-cCCee--eEeecceeEEEEEeeCCCCCCCCHHHHHH-
Q 013235 359 VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKER---LTALKDK-YGIIG--DVRGRGFLLGVEFVTDRQLKTPAKAETLY- 431 (447)
Q Consensus 359 ~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~---L~~l~~~-~~~i~--~vrg~Gl~~giel~~~~~~~~p~~~~~~~- 431 (447)
++++++.++|+.+.++++.++++++.++++++ |.+..++ ++.+. ..+..|+++++++.... + ..+
T Consensus 298 ~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~-----~---~~~~ 369 (425)
T 2r2n_A 298 FNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGIN-----D---VKEL 369 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCS-----C---CHHH
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCC-----C---HHHH
Confidence 99999999998654433444444443333322 2222223 23222 23567899999984311 0 123
Q ss_pred HHHHHHhCCceeec
Q 013235 432 IMDKMKGICALFFS 445 (447)
Q Consensus 432 ~~~~l~~~Gvlv~~ 445 (447)
+.+.|.++||++.+
T Consensus 370 ~~~~l~~~gv~v~p 383 (425)
T 2r2n_A 370 IEEKAVKMGVLMLP 383 (425)
T ss_dssp HHTHHHHTTEECEE
T ss_pred HHHHHHHCCcEEec
Confidence 56788899999864
No 112
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.90 E-value=3.8e-23 Score=208.08 Aligned_cols=314 Identities=13% Similarity=0.041 Sum_probs=197.1
Q ss_pred CeEEEecCCcccccCCCCC--HHHHHHHHH-HHHhccccccccc-chHHHHHHHHHHHhCCC------CCc--eEEEcCC
Q 013235 99 RRYLDAFGGIATVCCGHCH--PYVVDSIVN-QIKRIQHSTVLYL-NHAIADFAEALASKMPG------NLK--VVFFTNS 166 (447)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~--p~v~~A~~~-~l~~~~~~~~~~~-~~~~~elae~L~~~~~~------~~~--~v~~~~s 166 (447)
..+|||..|++..+-|+.+ |.|.+|+.+ +++... ...|. .....++.+.|++++.. ..+ +|++++|
T Consensus 26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~--~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g 103 (397)
T 3fsl_A 26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHG--ASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLG 103 (397)
T ss_dssp SCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCC--CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESH
T ss_pred CCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccc--cccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCC
Confidence 3579999887555566665 899999998 876521 12232 23345566666665432 345 7999999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHH
Q 013235 167 GTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL 246 (447)
Q Consensus 167 GseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~ 246 (447)
|++|++.++++.....+++.|++.+++|++....+...+. .+..++.. ....++.| .+++++.
T Consensus 104 ~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~-----------~~~~~~~~--~~~~~~~d----~~~l~~~ 166 (397)
T 3fsl_A 104 GSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGF-----------EVSTYPWY--DEATNGVR----FNDLLAT 166 (397)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTC-----------CEEEECCE--ETTTTEEC----HHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCC-----------ceEEEeee--eccCCcCc----HHHHHHH
Confidence 9999999988766566778999999999987655443221 12223220 01112224 6778888
Q ss_pred HHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC-Cccccccc-CCCCC---EEE
Q 013235 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGFEAH-GVVPD---IVT 321 (447)
Q Consensus 247 i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~-~~~~~~~~-gv~pD---ivt 321 (447)
+.+.. .+..++++...++++|.+. +.+.+++|.++|++||+++|+||+|++|...+. .......+ +..++ +.+
T Consensus 167 l~~~~-~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 244 (397)
T 3fsl_A 167 LKTLQ-AGSIVLLHPCCHNPTGADL-TNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNS 244 (397)
T ss_dssp HTTCC-TTCEEEECSSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEE
T ss_pred HHhCC-CCCEEEEeCCCCCCCCcCC-CHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEec
Confidence 76542 3567777777778888765 677899999999999999999999999876531 22222211 22233 336
Q ss_pred eecccc-CCcccccccc---CHHHHHhhcCC-c---ccccCCCChHHHHHHHHHHHHH------h--hhhHHHHHHHHHH
Q 013235 322 MAKGIG-NGIPLGAVVT---TPEIAEVLTRR-N---YFNTFGGNPVCTAAGHAVLKVI------Q--KDKLQNNAHVVGS 385 (447)
Q Consensus 322 ~sK~lg-~G~pigav~~---~~~i~~~l~~~-~---~~~T~~~np~a~aaala~L~~i------~--~~~l~~~~~~~g~ 385 (447)
+||.++ .|+|+|++++ ++++++.+... . ...+.+.++++++++.+.|+.. + -+++.++++++.+
T Consensus 245 ~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (397)
T 3fsl_A 245 FSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQ 324 (397)
T ss_dssp CTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999 7999999964 56665533221 1 1233344677777776666421 1 1245566667777
Q ss_pred HHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 386 YLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 386 ~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
++.+.|+++....++....+..|+++++.+. ...+.+.|.++||++.+
T Consensus 325 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~gi~v~~ 372 (397)
T 3fsl_A 325 ELVKVLSTEMPERNFDYLLNQRGMFSYTGLS------------AAQVDRLREEFGVYLIA 372 (397)
T ss_dssp HHHHHHHHHCTTSCCTHHHHCCSSEEECCCC------------HHHHHHHHHTTCEECCT
T ss_pred HHHHHHHhcCCCCCceeecCCceEEEecCCC------------HHHHHHHHHhCCEEECC
Confidence 7777776653211111112334666665541 13466677889999875
No 113
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.90 E-value=3.8e-22 Score=200.58 Aligned_cols=309 Identities=12% Similarity=0.062 Sum_probs=195.3
Q ss_pred CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc--ccccccchHHHHHHHHHHHhCC--CCCceEEEcCCHHHHHH
Q 013235 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH--STVLYLNHAIADFAEALASKMP--GNLKVVFFTNSGTEANE 172 (447)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~--~~~~~~~~~~~elae~L~~~~~--~~~~~v~~~~sGseA~e 172 (447)
+|+.+|||..|.. .++ .+|.+.+++.+.++.... ....+..+...++++.+.+..+ ...++|++++||++|++
T Consensus 29 ~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~ 105 (385)
T 1b5p_A 29 QGVDLVALTAGEP--DFD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALF 105 (385)
T ss_dssp TTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEecCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHH
Confidence 3556789887765 345 468999999988865311 1111123334445555544333 24568999999999999
Q ss_pred HHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCC
Q 013235 173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTS 252 (447)
Q Consensus 173 ~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~ 252 (447)
.+++... .+++.|++..++|++....+... |...+..|......|..| .+++++.+. +
T Consensus 106 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~l~---~ 163 (385)
T 1b5p_A 106 NLFQAIL--DPGDEVIVLSPYWVSYPEMVRFA-------------GGVVVEVETLPEEGFVPD----PERVRRAIT---P 163 (385)
T ss_dssp HHHHHHC--CTTCEEEEEESCCTHHHHHHHHT-------------TCEEEEEECCGGGTTCCC----HHHHHTTCC---T
T ss_pred HHHHHhc--CCCCEEEEcCCCchhHHHHHHHc-------------CCEEEEeecCcccCCCCC----HHHHHHhcC---C
Confidence 9998653 35678999999998655433221 222222222111123334 456665553 2
Q ss_pred CCeEEEEE-ccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE--Eeecccc-C
Q 013235 253 GHVAGFLS-ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIG-N 328 (447)
Q Consensus 253 ~~~aavi~-Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg-~ 328 (447)
++.+|++ +| ++++|.+. +++.+++|.++|++||+++|+||+|..|...| ....+..+.-..+++ +|||.++ .
T Consensus 164 -~~~~v~~~~p-~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~i~~~s~SK~~~~~ 239 (385)
T 1b5p_A 164 -RTKALVVNSP-NNPTGAVY-PKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-EHFSPGRVAPEHTLTVNGAAKAFAMT 239 (385)
T ss_dssp -TEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCCGGGTCTTTEEEEEESTTTTTCG
T ss_pred -CCEEEEEeCC-CCCCCCCc-CHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCCHHHcCCCCEEEEEechhhcCCc
Confidence 4555544 55 55666654 67889999999999999999999999886655 333332221112333 6899998 6
Q ss_pred CccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHH---Hhh--hhHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 013235 329 GIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKV---IQK--DKLQNNAHVVGSYLKERLTALKDKYGIIGD 403 (447)
Q Consensus 329 G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~---i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~ 403 (447)
|+++|++++++++++.+.......+++.+++++.++.++|+. ..+ ++..+++++..+++.+.|+++ .....
T Consensus 240 G~RiG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~-- 315 (385)
T 1b5p_A 240 GWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL--GLKAV-- 315 (385)
T ss_dssp GGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCCBC--
T ss_pred ccceEEEEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC--CCeec--
Confidence 999999999999988876544446778889999988888863 221 234455666666777776664 22211
Q ss_pred EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 404 vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
....|+++.+.+.... ....++.+.|+++||++.+
T Consensus 316 ~~~~~~~~~~~~~~~~-------~~~~~l~~~l~~~gv~v~~ 350 (385)
T 1b5p_A 316 RPSGAFYVLMDTSPIA-------PDEVRAAERLLEAGVAVVP 350 (385)
T ss_dssp CCSBTTEEEEECTTTC-------SSHHHHHHHHHHTTEECEE
T ss_pred CCCeeEEEEEecCCCC-------CCHHHHHHHHHHCCeEEec
Confidence 1233556666652100 0135688889999999875
No 114
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.90 E-value=2.9e-22 Score=203.03 Aligned_cols=312 Identities=15% Similarity=0.044 Sum_probs=192.6
Q ss_pred CCeEEEecCCcccccCCC--CCHHHHHHHHHHHHh--cccccccccchHHHHHHHHHHHhC-CCCCceEEEcCCHHHHHH
Q 013235 98 GRRYLDAFGGIATVCCGH--CHPYVVDSIVNQIKR--IQHSTVLYLNHAIADFAEALASKM-PGNLKVVFFTNSGTEANE 172 (447)
Q Consensus 98 G~~ylD~~~g~~~~~lGh--~~p~v~~A~~~~l~~--~~~~~~~~~~~~~~elae~L~~~~-~~~~~~v~~~~sGseA~e 172 (447)
|+.+|||..|.....-|+ .+|.|.+|+.+.... ..+....+..+...++++.+.+.. +...+++++++||++|++
T Consensus 36 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~al~ 115 (413)
T 3t18_A 36 REAVINAALGTLLDDKGKIIALPSVYDRLDEMDRSHIASYAPIEGEKDYRKIVIDTLFGPYKPEGYISAIATPGGTGAIR 115 (413)
T ss_dssp GGGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHH
T ss_pred ccceEeccccCccCCCCCcCChHHHHHHHHhcCcccccCcCCCCCCHHHHHHHHHHHhcccCccccCcEEEcCccHHHHH
Confidence 457788887765322222 467788777653321 111111222334445555554433 222348999999999999
Q ss_pred HHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc-C
Q 013235 173 LAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG-T 251 (447)
Q Consensus 173 ~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~-~ 251 (447)
.+++... .+++.|++.+++|++........ |...+..|..... |+.| .++|++.+... .
T Consensus 116 ~~~~~~~--~~gd~Vl~~~p~~~~~~~~~~~~-------------g~~~~~~~~~~~~-~~~d----~~~l~~~l~~~~~ 175 (413)
T 3t18_A 116 SAIFSYL--DEGDPLICHDYYWAPYRKICEEF-------------GRNFKTFEFFTDD-FAFN----IDVYKEAIDEGIR 175 (413)
T ss_dssp HHHHHHC--CSSCEEEEESSCCTHHHHHHHHH-------------TCEEEEECCBCTT-SSBC----HHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCEEEECCCCcccHHHHHHHh-------------CCeEEEeeccCCC-CCcC----HHHHHHHHHHHhh
Confidence 9998553 35688999999998766544332 2222222221111 3445 45666666431 0
Q ss_pred CCCeEEEEEc-cccCCCceeeCCCChHHHHHHHHH------HhCCEEEEeccccCccccCCCccc--ccccCCCCCE---
Q 013235 252 SGHVAGFLSE-SIQGVGGIIELAPGYLPAVYKSIK------KAGGLCIADEVQAGFARTGSHFWG--FEAHGVVPDI--- 319 (447)
Q Consensus 252 ~~~~aavi~E-pi~~~gG~~~~~~~~l~~l~~l~~------~~g~llI~DEv~tGfgr~G~~~~~--~~~~gv~pDi--- 319 (447)
++..++++++ |.++++|.+. +.+.+++|.++|+ +||+++|+||+|.+|+++|..... ....++.+|+
T Consensus 176 ~~~~~~vi~~~p~~NPtG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i 254 (413)
T 3t18_A 176 DSDRIASLINSPGNNPTGYSL-SDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVV 254 (413)
T ss_dssp HCSEEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEE
T ss_pred cCCCEEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEE
Confidence 1244466666 5488888776 6677999999999 899999999999999988742222 2334455663
Q ss_pred E--Eeecccc-CCcccccccc---CHHHHHhhcCCcc---ccc-CCCChHHHHHHHHHHHHHh-------hhhHHHHHHH
Q 013235 320 V--TMAKGIG-NGIPLGAVVT---TPEIAEVLTRRNY---FNT-FGGNPVCTAAGHAVLKVIQ-------KDKLQNNAHV 382 (447)
Q Consensus 320 v--t~sK~lg-~G~pigav~~---~~~i~~~l~~~~~---~~T-~~~np~a~aaala~L~~i~-------~~~l~~~~~~ 382 (447)
+ +|||.++ .|+|+|++++ ++++++.+..... ..+ ...++++++++.++|+..+ .+++.+++++
T Consensus 255 ~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 334 (413)
T 3t18_A 255 VAFSMSKSHTAYGLRSGAAVGISSSKEIIEEFEASLAHSARCNWSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKS 334 (413)
T ss_dssp EEEEHHHHTTCGGGCCEEEEEEESCHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCccCCCcCcCcEEEEEecCCHHHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 3 7899999 8999999998 9999988765321 123 3478888888877765321 1133455555
Q ss_pred HHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 383 VGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 383 ~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+.+++.+.|+++ .+... ....|+++.+++.+ ..++.+.|.++||++.+
T Consensus 335 ~~~~l~~~l~~~--g~~~~--~~~~~~~~~~~~~~-----------~~~~~~~l~~~gv~v~~ 382 (413)
T 3t18_A 335 RADVFVTAAKEN--KLTMI--PYFGGFFTFIPTDK-----------AFDIVKDLEKENIFTIP 382 (413)
T ss_dssp HHHHHHHHHHHT--TCCCB--CCCSSSCEEEECSC-----------HHHHHHHHHHTTEECEE
T ss_pred HHHHHHHHHHHc--CCCcc--CCCceEEEEeCCCC-----------HHHHHHHHHhCCEEEec
Confidence 666666666554 22221 12335556555411 35677889999999875
No 115
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.90 E-value=1.3e-22 Score=200.00 Aligned_cols=284 Identities=13% Similarity=0.077 Sum_probs=190.4
Q ss_pred CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCC---CCCceEEEcCCHHHHHHHHH
Q 013235 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMP---GNLKVVFFTNSGTEANELAI 175 (447)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~---~~~~~v~~~~sGseA~e~Ai 175 (447)
.++|||.+|.. +++ .+|++.+|+.+++... ....|+.....+++++|+++++ .+.++|++++||++|++.++
T Consensus 19 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~--~~~~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~ 93 (335)
T 1uu1_A 19 RDKTYLALNEN--PFP-FPEDLVDEVFRRLNSD--ALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMM 93 (335)
T ss_dssp CCSEEESSCCC--SSC-CCHHHHHHHHHTCCGG--GGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHH
T ss_pred CcceECCCCCC--CCC-CCHHHHHHHHHHhhhh--hhhcCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHH
Confidence 46899988876 455 6899999999887432 1223444446788999998886 55678999999999999999
Q ss_pred HHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCe
Q 013235 176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV 255 (447)
Q Consensus 176 k~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~ 255 (447)
+.+ ++.|++. ++||+....+... |...+..|.. ..|+.|. +++ + ++
T Consensus 94 ~~~-----gd~Vl~~-p~y~~~~~~~~~~-------------g~~~~~v~~~--~~~~~d~----~~l--------~-~~ 139 (335)
T 1uu1_A 94 LMF-----DRSVFFP-PTYSCYRIFAKAV-------------GAKFLEVPLT--KDLRIPE----VNV--------G-EG 139 (335)
T ss_dssp HHS-----SEEEECS-SSCHHHHHHHHHH-------------TCEEEECCCC--TTSCCCC----CCC--------C-TT
T ss_pred HHh-----CCcEEEC-CCcHHHHHHHHHc-------------CCeEEEeccC--CCCCCCH----HHc--------C-CC
Confidence 865 4788888 9999876544332 1222222211 1122231 122 1 34
Q ss_pred EEEE-EccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccc-ccccCCCCCEEEeecccc-CCccc
Q 013235 256 AGFL-SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG-FEAHGVVPDIVTMAKGIG-NGIPL 332 (447)
Q Consensus 256 aavi-~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~-~~~~gv~pDivt~sK~lg-~G~pi 332 (447)
++|+ ++| ++++|.+.+ .+++.++++.+| ++|+||+|++|+. + .... .+..+....+.+++|.+| +|+|+
T Consensus 140 ~~v~l~~p-~nptG~~~~----~~~l~~l~~~~~-~li~De~~~~~~~-~-~~~~~~~~~~~~i~~~s~sK~~g~~G~r~ 211 (335)
T 1uu1_A 140 DVVFIPNP-NNPTGHVFE----REEIERILKTGA-FVALDEAYYEFHG-E-SYVDFLKKYENLAVIRTFSKAFSLAAQRV 211 (335)
T ss_dssp EEEEEESS-CTTTCCCCC----HHHHHHHHHTTC-EEEEECTTHHHHC-C-CCGGGGGTCSSEEEEEESTTTTTCGGGCC
T ss_pred CEEEEeCC-CCCCCCCCC----HHHHHHHHHhCC-EEEEECcchhhcc-h-hHHHHhhhCCCEEEEecchhhcCCcccCe
Confidence 4555 677 677787764 445555555558 9999999998753 2 2222 233333344558999998 79999
Q ss_pred cccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeE
Q 013235 333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ-KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLL 411 (447)
Q Consensus 333 gav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~-~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~ 411 (447)
|++++++++++.+... ..+|+.|+++++++.++|+..+ -+++.++++++.+++.+.|+++ ... -.++.|.++
T Consensus 212 G~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~---~~~~~~~~~ 284 (335)
T 1uu1_A 212 GYVVASEKFIDAYNRV--RLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM--GYR---ITDSRGNFV 284 (335)
T ss_dssp EEEEECHHHHHHHHHH--SCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH--TCC---BCCCCSSEE
T ss_pred EEEEeCHHHHHHHHHh--cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC--CcE---EcCCCCeEE
Confidence 9999999998877642 2457899999999999987531 2345566777777777777665 222 235567888
Q ss_pred EEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 412 GVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 412 giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
++++. . ....++.+.|+++||++.+
T Consensus 285 ~~~~~--------~-~~~~~~~~~l~~~gi~v~~ 309 (335)
T 1uu1_A 285 FVFME--------K-EEKERLLEHLRTKNVAVRS 309 (335)
T ss_dssp EEECC--------T-HHHHHHHHHHHHHTEEEEE
T ss_pred EEECC--------C-CCHHHHHHHHHHCCEEEEE
Confidence 87762 1 2245788899999999863
No 116
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.90 E-value=1.6e-23 Score=213.05 Aligned_cols=311 Identities=12% Similarity=0.001 Sum_probs=202.7
Q ss_pred EEEecCCcccccCCCCCHHHHHHHH--HHHHhcccccccc-c-chHHHHHHHHHHHhCCCCCceEEEcCCHHHHHH--HH
Q 013235 101 YLDAFGGIATVCCGHCHPYVVDSIV--NQIKRIQHSTVLY-L-NHAIADFAEALASKMPGNLKVVFFTNSGTEANE--LA 174 (447)
Q Consensus 101 ylD~~~g~~~~~lGh~~p~v~~A~~--~~l~~~~~~~~~~-~-~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e--~A 174 (447)
.|||..|.....+...+|.+.+|+. +.+. .......| . .....+|++.|+++++.+.++|++++|+++|+. .+
T Consensus 27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~-~~~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~ 105 (423)
T 3ez1_A 27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRM-DGLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVL 105 (423)
T ss_dssp CEESCCCCCCHHHHHTTGGGGGSCCGGGCEE-TTEETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHH
T ss_pred eEecCCCCCChHhCCCcHHHHHHHhhhHHhh-cchhhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHH
Confidence 4777776665333445567777775 3333 11222345 2 345679999999999877789999999999997 77
Q ss_pred HHHHHhh-cC--------CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHH
Q 013235 175 IMMARLY-TG--------CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD 245 (447)
Q Consensus 175 ik~ar~~-t~--------~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~ 245 (447)
++..... .| ++.|++.+++|++........+ ...+..|.... +.| .++|++
T Consensus 106 ~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~---g~d----~~~l~~ 165 (423)
T 3ez1_A 106 TFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLG-------------FELLTVDMQSD---GPD----VDAVER 165 (423)
T ss_dssp HHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHT-------------CEEEEEEEETT---EEC----HHHHHH
T ss_pred HHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcC-------------CEEEeccCCCC---CCC----HHHHHH
Confidence 7755432 33 5899999999998766544332 11111111111 123 677888
Q ss_pred HHHccCCCCeEEEEEcc-ccCCCceeeCCCChHHHHHHHH-HHhCCEEEEeccccCccccC---C---Ccccc----ccc
Q 013235 246 LIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSI-KKAGGLCIADEVQAGFARTG---S---HFWGF----EAH 313 (447)
Q Consensus 246 ~i~~~~~~~~aavi~Ep-i~~~gG~~~~~~~~l~~l~~l~-~~~g~llI~DEv~tGfgr~G---~---~~~~~----~~~ 313 (447)
.+.+ ..++++|+++| .++++|.+. +.+.+++|.++| ++||+++|+||+|+.+...+ . .++.+ +..
T Consensus 166 ~l~~--~~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (423)
T 3ez1_A 166 LAGT--DPSVKGILFVPTYSNPGGETI-SLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYP 242 (423)
T ss_dssp HHHS--CTTEEEEEECSSSCTTTCCCC-CHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCT
T ss_pred HHhh--CCCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCC
Confidence 7752 23678888887 567788776 667799999999 99999999999998543222 0 11111 122
Q ss_pred CCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHH-------HH
Q 013235 314 GVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVG-------SY 386 (447)
Q Consensus 314 gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g-------~~ 386 (447)
+....+.+|||.+.+|+++|++++++++++.+.......+++.+++++.++.+.|+.+ .+.+.+++++.. +.
T Consensus 243 ~~~i~~~S~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~ 321 (423)
T 3ez1_A 243 DRAFVFASTSKITFAGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEY-PGGLEGLMRDHAAIIAPKFRA 321 (423)
T ss_dssp TSEEEEEESTTTSCSSSSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCchhhccCCcceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHH
Confidence 3334466899997789999999999999998876556678889999999998888741 022333333333 33
Q ss_pred HHHHHHHHHHhcC-Cee-eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 387 LKERLTALKDKYG-IIG-DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 387 l~~~L~~l~~~~~-~i~-~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+.+.|.+...+.+ .+. ..+..|+++++++... ....+.+.|.++||++.+
T Consensus 322 l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~---------~~~~~~~~l~~~gv~v~~ 373 (423)
T 3ez1_A 322 VDEVLRAELGEGGEYATWTLPKGGYFISLDTAEP---------VADRVVKLAEAAGVSLTP 373 (423)
T ss_dssp HHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS---------CHHHHHHHHHHTTEECCC
T ss_pred HHHHHHHhcCcCCCceEEeCCCccEEEEEECCCC---------cHHHHHHHHHHCCcEEec
Confidence 3333433222222 122 2345689999998432 135678889999999975
No 117
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.89 E-value=6.2e-22 Score=194.57 Aligned_cols=288 Identities=13% Similarity=0.046 Sum_probs=197.9
Q ss_pred CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHH
Q 013235 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM 176 (447)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik 176 (447)
+.+++|||.+|.. ++| .+|.|.+++.++++.. ..|+++...++.++|+++++...++++++++++++++.+++
T Consensus 14 ~~~~~i~l~~n~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~ 86 (337)
T 3p1t_A 14 AAAQAVCLAFNEN--PEA-VEPRVQAAIAAAAARI----NRYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISA 86 (337)
T ss_dssp CCCCCEECSSCCC--CSC-CCHHHHHHHHHHGGGT----TSCCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred CCCCceEeeCCCC--CCC-CCHHHHHHHHHhhhhh----ccCCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHH
Confidence 4568999998875 667 7899999999887654 34667788999999999997767789999999999999998
Q ss_pred HHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeE
Q 013235 177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA 256 (447)
Q Consensus 177 ~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a 256 (447)
.. +++.|++.+++|++....+... |+..+..|... .++.| .+++++. . +..
T Consensus 87 ~~----~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~--~~~~d----~~~l~~~-----~-~~~ 137 (337)
T 3p1t_A 87 EF----SSMRFVTAWPGFDGYRARIAVS-------------GLRHFEIGLTD--DLLLD----PNDLAQV-----S-RDD 137 (337)
T ss_dssp HS----TTSEEEEESSSCSHHHHHHTTS-------------CCEEEEECBCT--TSSBC----HHHHTTC-----C-TTE
T ss_pred hc----CCCeEEEeCCCcHHHHHHHHHc-------------CCEEEEecCCC--CCCCC----HHHHHhh-----c-CCC
Confidence 65 5688999999998765443221 22222222211 12334 4455432 2 345
Q ss_pred EEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeecccc-CCcccccc
Q 013235 257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGAV 335 (447)
Q Consensus 257 avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg-~G~pigav 335 (447)
++++...++++|.+.+ ++++.++|+++++ +|+||+|.+|+..+. .. ....+....+.+++|.+| .|+++|++
T Consensus 138 ~v~i~~p~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~~-~~-~~~~~~~i~~~S~sK~~g~~G~r~G~~ 210 (337)
T 3p1t_A 138 CVVLANPSNPTGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFRA-RG-LAYGENELVFRSFSKSYGLAGLRLGAL 210 (337)
T ss_dssp EEEEESSCTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCSS-SC-CCCBTTEEEEEESSSTTCCTTTCCEEE
T ss_pred EEEEeCCCCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhhccccc-cc-cccCCCEEEEeeCchhccCcchheEEE
Confidence 6666666778888887 8899999999997 566999998876552 11 111122122346899998 89999999
Q ss_pred ccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEE
Q 013235 336 VTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ-KDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414 (447)
Q Consensus 336 ~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~-~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~gie 414 (447)
++++++++.+... ..+++.|+++++++.++|+..+ -++..++..+..+++.+.|+++ + +...+..|.++.+.
T Consensus 211 ~~~~~~~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g-~~~~~~~~~~~~~~ 283 (337)
T 3p1t_A 211 FGPSELIAAMKRK--QWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL----G-YRVASSEANFVLVE 283 (337)
T ss_dssp ECCHHHHHHHHTT--SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT----T-CCBCCCSSSEEEEE
T ss_pred EeCHHHHHHHHhh--cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----c-CEECCCCCeEEEEE
Confidence 9999999988653 3457788898888888876322 1233444455555566655554 2 22345667777776
Q ss_pred EeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 415 FVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 415 l~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+.+ ...+.+.|.++||++.+
T Consensus 284 ~~~-----------~~~~~~~l~~~gi~v~~ 303 (337)
T 3p1t_A 284 NAA-----------GERTLRFLRERGIQVKD 303 (337)
T ss_dssp CTT-----------THHHHHHHHHTTEECEE
T ss_pred cCC-----------HHHHHHHHHHCCeEEEE
Confidence 521 13567788899999875
No 118
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.89 E-value=5.2e-22 Score=201.46 Aligned_cols=262 Identities=12% Similarity=0.070 Sum_probs=180.3
Q ss_pred ecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHH--hc-ccc------cccccchHHHHHHHHHHHhCCCCCceEEEcC
Q 013235 95 DENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIK--RI-QHS------TVLYLNHAIADFAEALASKMPGNLKVVFFTN 165 (447)
Q Consensus 95 d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~--~~-~~~------~~~~~~~~~~elae~L~~~~~~~~~~v~~~~ 165 (447)
+.++..|||+.++ |+.+|+|.+|+.+++. .. ... ......+...+++++|++.++.+.+.|+|++
T Consensus 19 ~~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ 92 (423)
T 3lvm_A 19 AMKLPIYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTS 92 (423)
T ss_dssp -CCSSEECBTTTC------CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEES
T ss_pred ccCCCEeecCCCc------CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeC
Confidence 4466788997643 4689999999999887 32 111 1112345667899999999887677899999
Q ss_pred CHHHHHHHHHHHHHh-hc-CCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHH
Q 013235 166 SGTEANELAIMMARL-YT-GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDV 243 (447)
Q Consensus 166 sGseA~e~Aik~ar~-~t-~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~l 243 (447)
||++|++.+++.+.. ++ +++.|++..++|++.......+.. .|...+..|... .+..| .++|
T Consensus 93 ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~--~~~~d----~~~l 156 (423)
T 3lvm_A 93 GATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLER----------EGFEVTYLAPQR--NGIID----LKEL 156 (423)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHH----------TTCEEEEECCCT--TSCCC----HHHH
T ss_pred ChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHH----------cCCEEEEeccCC--CCccC----HHHH
Confidence 999999999996653 33 368899999999886654432210 022222222111 12224 5677
Q ss_pred HHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee
Q 013235 244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA 323 (447)
Q Consensus 244 e~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s 323 (447)
++.+. +++++|+++++++++|.+.+ +++|.++|++||++||+||+|++ +.. ........+|++++|
T Consensus 157 ~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~-~~~-----~~~~~~~~~di~~~s 222 (423)
T 3lvm_A 157 EAAMR----DDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV-GKL-----PIDLSQLKVDLMSFS 222 (423)
T ss_dssp HHHCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT-TTS-----CCCTTTSCCSEEEEE
T ss_pred HHhcC----CCcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc-CCC-----CcChhhcCCCEEEec
Confidence 77664 26789999999999999886 99999999999999999999863 221 122233458999877
Q ss_pred --ccccCCccccccccCHHHHHhhcCCcc-------cccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHH
Q 013235 324 --KGIGNGIPLGAVVTTPEIAEVLTRRNY-------FNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLT 392 (447)
Q Consensus 324 --K~lg~G~pigav~~~~~i~~~l~~~~~-------~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~ 392 (447)
|.+ |+.++|++++++++++.+..... ..++..|+.+++++.++|+.+++ +++.++.+++.++|++.|+
T Consensus 223 ~sK~~-g~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~ 301 (423)
T 3lvm_A 223 GHKIY-GPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIK 301 (423)
T ss_dssp STTTT-SCSSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHhc-CCCCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 954 44458999999887665544321 23455678888888888887765 4566666777777766664
Q ss_pred H
Q 013235 393 A 393 (447)
Q Consensus 393 ~ 393 (447)
+
T Consensus 302 ~ 302 (423)
T 3lvm_A 302 D 302 (423)
T ss_dssp T
T ss_pred c
Confidence 4
No 119
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.89 E-value=5.3e-22 Score=200.92 Aligned_cols=297 Identities=11% Similarity=0.049 Sum_probs=203.7
Q ss_pred CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhc-ccccc--cc---cchHHHHHHHHHHHhCCCCCceEEEcCCHHHH
Q 013235 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRI-QHSTV--LY---LNHAIADFAEALASKMPGNLKVVFFTNSGTEA 170 (447)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~-~~~~~--~~---~~~~~~elae~L~~~~~~~~~~v~~~~sGseA 170 (447)
+|..|||+.+ .|+.+|.|.+|+.++++.. ..... .+ ..+...+++++|+++++.+.++|+|++||+++
T Consensus 27 ~~~~yld~~~------~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 100 (416)
T 1qz9_A 27 EGVIYLDGNS------LGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN 100 (416)
T ss_dssp TTCEECCTTT------SCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred CCeEeecCCC------cCCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHH
Confidence 5788999753 3578999999999999753 11111 11 13667899999999997666789999999999
Q ss_pred HHHHHHHHHhh----cCCCeEEEEcCCcccCchhhhh-ccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHH
Q 013235 171 NELAIMMARLY----TGCNDIISLRNAYHGNAAGTMG-ATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD 245 (447)
Q Consensus 171 ~e~Aik~ar~~----t~~~~ii~~~~~yHG~~~~~~~-~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~ 245 (447)
++.+++.++.. .+++++|+..+.+|+....++. +... ... ...+..++. .++|++
T Consensus 101 l~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~--~~~---g~~~~~v~~---------------~~~l~~ 160 (416)
T 1qz9_A 101 LFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADM--LQQ---GYTLRLVDS---------------PEELPQ 160 (416)
T ss_dssp HHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHH--HCS---SCEEEEESS---------------GGGHHH
T ss_pred HHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHH--hcC---CceEEEeCc---------------HHHHHH
Confidence 99999977533 3455677788888886554332 1100 000 001222221 245666
Q ss_pred HHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--
Q 013235 246 LIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA-- 323 (447)
Q Consensus 246 ~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s-- 323 (447)
.+. +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ +|... +..+.+ .+|++++|
T Consensus 161 ~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~~--~~d~~~~s~~ 226 (416)
T 1qz9_A 161 AID----QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP---VDLHQA--GADYAIGCTY 226 (416)
T ss_dssp HCS----TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC---CCHHHH--TCSEEEECSS
T ss_pred HhC----CCceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcC---CChhhc--CCCEEEecCc
Confidence 553 26789999999999999876 9999999999999999999996 54332 222333 37998875
Q ss_pred ccccCCccc-cccccCHHHHHhhcCCcc-----------------------cccCCCChHHHHHHHHHHHHHhh---hhH
Q 013235 324 KGIGNGIPL-GAVVTTPEIAEVLTRRNY-----------------------FNTFGGNPVCTAAGHAVLKVIQK---DKL 376 (447)
Q Consensus 324 K~lg~G~pi-gav~~~~~i~~~l~~~~~-----------------------~~T~~~np~a~aaala~L~~i~~---~~l 376 (447)
|.+++|.++ |++++++++++.+....+ ...+..|+.+++++.++|+.+.+ +++
T Consensus 227 K~l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~ 306 (416)
T 1qz9_A 227 KYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASL 306 (416)
T ss_dssp STTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccCCCCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 999888887 999999988766654211 11234678888888899998764 356
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hcCCeeeE--eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235 377 QNNAHVVGSYLKERLTALKD--KYGIIGDV--RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF 444 (447)
Q Consensus 377 ~~~~~~~g~~l~~~L~~l~~--~~~~i~~v--rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~ 444 (447)
.++.+++.+++.+.|+++.. .+..+... +..+.++++++. + ..++.+.|.++||++.
T Consensus 307 ~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------~---~~~l~~~l~~~gi~~~ 367 (416)
T 1qz9_A 307 RRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP--------E---GYAVIQALIDRGVIGD 367 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT--------T---HHHHHHHHHTTTEECE
T ss_pred HHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC--------C---HHHHHHHHHhCCcEec
Confidence 78888889999999887633 22211111 124667777762 1 3568889999999874
No 120
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.89 E-value=6.7e-22 Score=197.37 Aligned_cols=297 Identities=14% Similarity=0.111 Sum_probs=199.2
Q ss_pred eEEEecCCcccccCCCCCHHHHHHHHHHHHhcc-ccc--c---cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHH
Q 013235 100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HST--V---LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANEL 173 (447)
Q Consensus 100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~-~~~--~---~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~ 173 (447)
.|||+.++ |+.+|+|.+|+.++++... ... . ........+++++|+++++.+.+++++++||++|++.
T Consensus 3 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~ 76 (384)
T 1eg5_A 3 VYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINW 76 (384)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHH
T ss_pred EEEecCcc------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHH
Confidence 57887653 4789999999999987631 111 1 1124556889999999987666789999999999999
Q ss_pred HHHHHHh--hcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235 174 AIMMARL--YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT 251 (447)
Q Consensus 174 Aik~ar~--~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~ 251 (447)
+++.++. ..++++|++.+++||+.......+.. .|...+..|... .+..| .++|++.+.
T Consensus 77 ~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~--~~~~d----~~~l~~~i~--- 137 (384)
T 1eg5_A 77 ILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSM----------KGFKVKYVPVDS--RGVVK----LEELEKLVD--- 137 (384)
T ss_dssp HHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHH----------TTCEEEECCBCT--TSCBC----HHHHHHHCC---
T ss_pred HHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHh----------cCCEEEEEccCC--CCccC----HHHHHHHhC---
Confidence 9998763 13568899999999986554421110 022222222211 12234 566776664
Q ss_pred CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC--CEEEEeccccCccccCCCcccccccCCCCCEEEee--cccc
Q 013235 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG--GLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIG 327 (447)
Q Consensus 252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g--~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg 327 (447)
.++++|++++.++++|.+.+ +++|.++|++|| +++|+||+|+ ||... +.++. ..+|++++| |.+|
T Consensus 138 -~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~~---~~~~~--~~~di~~~s~sK~~g 206 (384)
T 1eg5_A 138 -EDTFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKIP---FSLEK--LEVDYASFSAHKFHG 206 (384)
T ss_dssp -TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSC---CCCTT--TCCSEEEEEGGGGTS
T ss_pred -CCCeEEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCcc---cCchh--cCCCEEEecHHHhcC
Confidence 26788999999999998886 899999999999 9999999996 65432 22222 357999877 9765
Q ss_pred C-CccccccccCHHH--HHhhcCC---cccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcC
Q 013235 328 N-GIPLGAVVTTPEI--AEVLTRR---NYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYG 399 (447)
Q Consensus 328 ~-G~pigav~~~~~i--~~~l~~~---~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~ 399 (447)
. | +|++++++++ ...+... ....+++.|+++++++.++|+.+++ +++.++.+++.+++.+.|++. .+.
T Consensus 207 ~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~ 282 (384)
T 1eg5_A 207 PKG--VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNL--GAH 282 (384)
T ss_dssp CTT--CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT--TCE
T ss_pred CCc--eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC--CeE
Confidence 3 4 7999999876 2222211 1235677889999999999987643 356677777788888777652 221
Q ss_pred CeeeEee-cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 400 IIGDVRG-RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 400 ~i~~vrg-~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
.+....+ .+.++.+.+... ...++.+.|.++||++.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~ 320 (384)
T 1eg5_A 283 IITPLEISLPNTLSVSFPNI---------RGSTLQNLLSGYGIYVST 320 (384)
T ss_dssp ECSCTTSBCTTEEEEECTTC---------CHHHHHHHHHHTTEECBC
T ss_pred EeCCcccCCCCEEEEEeCCC---------CHHHHHHHHhhCCeEEec
Confidence 1111111 345666665310 135688889999999875
No 121
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.89 E-value=3.4e-22 Score=205.83 Aligned_cols=317 Identities=15% Similarity=0.132 Sum_probs=191.9
Q ss_pred CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHH
Q 013235 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAI 175 (447)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Ai 175 (447)
.|+.||||.+++.+ +.|.+++.+++.... ..| ..+...+|+++|+++++ .++++|++||++|++.|+
T Consensus 41 ~g~~ylD~~~~~~~-------~~v~~a~~~~~~~~~---~~y~~~~~~~~l~~~la~~~~--~~~v~~t~ggt~A~~~al 108 (467)
T 1ax4_A 41 SSAVYIDLLTDSGT-------NAMSDHQWAAMITGD---EAYAGSRNYYDLKDKAKELFN--YDYIIPAHQGRGAENILF 108 (467)
T ss_dssp GGGCSEECSCSSSC-------CCEEHHHHHHHHTCC---CCSSSCHHHHHHHHHHHHHHC--CCEEEEESSHHHHHHHHH
T ss_pred CCceeeecccCcCC-------HHHHHHHHHHHhhcc---cccccCccHHHHHHHHHHHcC--CCcEEEcCCcHHHHHHHH
Confidence 47789999887753 778888887765431 223 45677899999999985 478999999999999999
Q ss_pred HHHHhh---cCCCe--EEEEcCCcc-cCchhhhhccCCCCccccccCCCeEeecCCCCcCCCC--CCChHHHHHHHHHHH
Q 013235 176 MMARLY---TGCND--IISLRNAYH-GNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVF--GADGEMYAKDVQDLI 247 (447)
Q Consensus 176 k~ar~~---t~~~~--ii~~~~~yH-G~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~--~~d~~~~~~~le~~i 247 (447)
+.++.+ +|+.+ ||+. .+| +.+..++...+........ ....+.....+| ..| .++|++.+
T Consensus 109 ~~~~~~~~~~Gd~~~~viv~--~~~~~~~~~~~~~~g~~~~~~~~------~~~~~~~~~~~~~~~~d----~~~le~~i 176 (467)
T 1ax4_A 109 PVLLKYKQKEGKAKNPVFIS--NFHFDTTAAHVELNGCKAINIVT------EKAFDSETYDDWKGDFD----IKKLKENI 176 (467)
T ss_dssp HHHHHHHHHTTCCSSCEEEE--SSCCHHHHHHHHHTTCEEEECBC------GGGGCTTSCCTTTTCBC----HHHHHHHH
T ss_pred HHHHHhhccCCCccceEEEe--ccccchhhHHHhccCCceecccc------cccccccccCCcccccC----HHHHHHHH
Confidence 998764 45431 5555 555 5445455444321110000 000000000111 224 67788887
Q ss_pred HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccC----c------cccCCCcccccccC---
Q 013235 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG----F------ARTGSHFWGFEAHG--- 314 (447)
Q Consensus 248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG----f------gr~G~~~~~~~~~g--- 314 (447)
.....+++++|+++|+++++|..+++.+++++|+++|++||++||+||++.. | +..|.. ....+
T Consensus 177 ~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 253 (467)
T 1ax4_A 177 AQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNAT---IKEVIFDM 253 (467)
T ss_dssp HHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCC---HHHHHHHH
T ss_pred HhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCc---hhhhhhhh
Confidence 6432237899999999998844566889999999999999999999999752 0 222210 00011
Q ss_pred -CCCCEEEeeccccCCccccccc-cC-H-HHHHhhcCC----cccccCCCChHHHHHHHH-HHHHHhhhhHHHHHHHHHH
Q 013235 315 -VVPDIVTMAKGIGNGIPLGAVV-TT-P-EIAEVLTRR----NYFNTFGGNPVCTAAGHA-VLKVIQKDKLQNNAHVVGS 385 (447)
Q Consensus 315 -v~pDivt~sK~lg~G~pigav~-~~-~-~i~~~l~~~----~~~~T~~~np~a~aaala-~L~~i~~~~l~~~~~~~g~ 385 (447)
..+|+++++.+-+.|+|+|+++ ++ + ++++.+... ....++++++..+.++.+ +|+.+.+++..++..++++
T Consensus 254 ~~~~d~~~~s~sK~~g~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 333 (467)
T 1ax4_A 254 YKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVK 333 (467)
T ss_dssp GGGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccceEEEeccccCCCCcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 1267776544334466776555 56 5 777765431 122466677666555444 6765554456666667788
Q ss_pred HHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCC-HHHHHHHHHHH-HhCCceeec
Q 013235 386 YLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPA-KAETLYIMDKM-KGICALFFS 445 (447)
Q Consensus 386 ~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~-~~~~~~~~~~l-~~~Gvlv~~ 445 (447)
++++.|++. .++.+...+ |.++++.+..- ....+. .....++.+.| .++||++.+
T Consensus 334 ~l~~~L~~~--~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~~gv~v~~ 390 (467)
T 1ax4_A 334 YLGDRLREA--GIPIQYPTG--GHAVFVDCKKL-VPQIPGDQFPAQAVINALYLESGVRAVE 390 (467)
T ss_dssp HHHHHHHHT--TCCBCSSCC--SSEEEEESTTT-CTTSCGGGCHHHHHHHHHHHHHCEECEE
T ss_pred HHHHHHHhC--CCCcccCCC--ceEEEEehhhh-ccccccCCCCHHHHHHHHHHhcCceeee
Confidence 888888772 444433333 44555552100 000011 11246788888 889999864
No 122
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.89 E-value=3.9e-22 Score=201.21 Aligned_cols=299 Identities=13% Similarity=0.061 Sum_probs=193.1
Q ss_pred CeEEEecCCcccccCCCCCHHHHHHHHHHHHh-ccc--ccccc--cchH---HHHHH-HHHHHhCCCCCceEEEcCCHHH
Q 013235 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-IQH--STVLY--LNHA---IADFA-EALASKMPGNLKVVFFTNSGTE 169 (447)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~-~~~--~~~~~--~~~~---~~ela-e~L~~~~~~~~~~v~~~~sGse 169 (447)
++|||+.+|.+.. +|+|.+|+.+++.. ..+ ....+ ..+. ..+++ ++|++.++.+. ..++++||++
T Consensus 23 ~~~i~~~~~~~~~-----~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~-~~i~~~sGt~ 96 (407)
T 2dkj_A 23 REGLELIASENFV-----SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAW-ANVQPHSGSQ 96 (407)
T ss_dssp HTSEECCTTCCCC-----CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHH
T ss_pred hcceeeccCCCCC-----CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCc-ceEEecchHH
Confidence 4689999888643 89999999999864 211 11111 1222 22222 47888876543 3356788999
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCCcccCc--hhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235 170 ANELAIMMARLYTGCNDIISLRNAYHGNA--AGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247 (447)
Q Consensus 170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~--~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i 247 (447)
|++.+++.+. .++++|++.+++|++.. ..++...+. .+..++.+.. ...+..| .+++++.+
T Consensus 97 a~~~~~~~~~--~~gd~Vl~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~-~~~~~~d----~~~l~~~l 159 (407)
T 2dkj_A 97 ANMAVYMALM--EPGDTLMGMDLAAGGHLTHGSRVNFSGK----------LYKVVSYGVR-PDTELID----LEEVRRLA 159 (407)
T ss_dssp HHHHHHHHHC--CTTCEEEEECGGGTCCGGGTCTTSHHHH----------HSEEEEECCC-TTTSSCC----HHHHHHHH
T ss_pred HHHHHHHHhc--CCCCEEEEecccccCccchHHHHHhcCc----------eEEEEecCCC-cccCccC----HHHHHHHH
Confidence 9999999773 46688999999998773 222211110 0111221100 0123345 56777777
Q ss_pred HccCCCCeEEEEE-ccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccC-ccccCCCcccccccCCCCCEE--Eee
Q 013235 248 DFGTSGHVAGFLS-ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG-FARTGSHFWGFEAHGVVPDIV--TMA 323 (447)
Q Consensus 248 ~~~~~~~~aavi~-Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG-fgr~G~~~~~~~~~gv~pDiv--t~s 323 (447)
... ++++|++ +|+++ .+.+ +++|.++|++||+++|+||+|++ +...| .... ..+ .+|++ +++
T Consensus 160 ~~~---~~~~v~~~~p~~~---~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~-~~~~--~~~-~~di~~~s~s 225 (407)
T 2dkj_A 160 LEH---RPKVIVAGASAYP---RFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAG-LHPN--PLP-YAHVVTSTTH 225 (407)
T ss_dssp HHH---CCSEEEECCSSCC---SCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTT-CSCC--CTT-TCSEEEEESS
T ss_pred hhc---CCeEEEEeccccC---CCCC----HHHHHHHHHHcCCEEEEEccccccccccC-ccCC--ccc-cccEEEEecc
Confidence 532 3456666 78775 2332 89999999999999999999986 54455 2221 112 27888 689
Q ss_pred ccccCCccccccccC-HHHHHhhcCC-cccccCCCChHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhc
Q 013235 324 KGIGNGIPLGAVVTT-PEIAEVLTRR-NYFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKY 398 (447)
Q Consensus 324 K~lg~G~pigav~~~-~~i~~~l~~~-~~~~T~~~np~a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~ 398 (447)
|+++ |.++|+++++ +++++.+... .++.+.+.++..++++.++|+.+.+ +++.++.+++.+++.+.|+++ .+
T Consensus 226 K~l~-g~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~ 302 (407)
T 2dkj_A 226 KTLR-GPRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR--GY 302 (407)
T ss_dssp GGGC-CCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred ccCC-CCCceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC--Cc
Confidence 9987 5578999999 8998877542 2344555678778788888887644 456778888888888888775 33
Q ss_pred CCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 399 GIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 399 ~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
..+.. ++.|.++++++.... ....++.+.|.++||++.+
T Consensus 303 ~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~ 341 (407)
T 2dkj_A 303 RIVTG-GTDNHLFLVDLRPKG-------LTGKEAEERLDAVGITVNK 341 (407)
T ss_dssp EEGGG-SCSSSEEEEECGGGT-------CCHHHHHHHHHHTTEECEE
T ss_pred eeecC-CCCceEEEEECcccC-------CCHHHHHHHHHHcCceecC
Confidence 22211 457889998884311 0135688889999999875
No 123
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.89 E-value=6.2e-23 Score=209.02 Aligned_cols=310 Identities=13% Similarity=0.027 Sum_probs=201.0
Q ss_pred EEEecCCcccccCCCCCHHHHHHHHHHHH-hcccccccccch-HHHHHHHHHHHhCCCCCceEEEcCCHHHHH--HHHHH
Q 013235 101 YLDAFGGIATVCCGHCHPYVVDSIVNQIK-RIQHSTVLYLNH-AIADFAEALASKMPGNLKVVFFTNSGTEAN--ELAIM 176 (447)
Q Consensus 101 ylD~~~g~~~~~lGh~~p~v~~A~~~~l~-~~~~~~~~~~~~-~~~elae~L~~~~~~~~~~v~~~~sGseA~--e~Aik 176 (447)
.|||..|.....+-..+|.+.+++.+++. ........|+.+ ...+|++.|+++++.+.++|++++++++++ ..+++
T Consensus 34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~ 113 (422)
T 3d6k_A 34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISW 113 (422)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHH
T ss_pred eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHH
Confidence 68988777632111245677777765431 111112345543 377899999998877778899999999997 55556
Q ss_pred HHHhh--cC--------CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHH
Q 013235 177 MARLY--TG--------CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL 246 (447)
Q Consensus 177 ~ar~~--t~--------~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~ 246 (447)
....- +| ++.|++.+++|++....+...+ ...+..|.... +.| .++|++.
T Consensus 114 ~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~---g~d----~~~l~~~ 173 (422)
T 3d6k_A 114 SYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFG-------------FEMINVPMTDE---GPD----MGVVREL 173 (422)
T ss_dssp HHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHT-------------CEEEEEEEETT---EEC----HHHHHHH
T ss_pred HhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcC-------------CEEEecCCCCC---CCC----HHHHHHH
Confidence 44321 01 2369999999998876554332 11222111111 123 5677777
Q ss_pred HHccCCCCeEEEEEcc-ccCCCceeeCCCChHHHHHHHHH-HhCCEEEEeccccC--ccccCCCcccc-------cccCC
Q 013235 247 IDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIK-KAGGLCIADEVQAG--FARTGSHFWGF-------EAHGV 315 (447)
Q Consensus 247 i~~~~~~~~aavi~Ep-i~~~gG~~~~~~~~l~~l~~l~~-~~g~llI~DEv~tG--fgr~G~~~~~~-------~~~gv 315 (447)
+.. .++++|++.| .++++|.+. +.+++++|.++|+ +||+++|+||+|.. |+..|.....+ +..+.
T Consensus 174 l~~---~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (422)
T 3d6k_A 174 VKD---PQVKGMWTVPVFGNPTGVTF-SEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNR 249 (422)
T ss_dssp HTS---TTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTC
T ss_pred Hhc---CCCeEEEEcCCCCCCCCCCC-CHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCc
Confidence 752 2577878666 566778765 7889999999999 99999999999974 76554212222 12344
Q ss_pred CCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHH-------HHHHHHHHHHH
Q 013235 316 VPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQ-------NNAHVVGSYLK 388 (447)
Q Consensus 316 ~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~-------~~~~~~g~~l~ 388 (447)
..++.+|||..++|+|+|++++++++++.+.......+++.|+++++++.++|+.. +.+. +.+++..+++.
T Consensus 250 ~i~~~S~SK~~~~GlriG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~~~~~l~ 327 (422)
T 3d6k_A 250 FWFMSSTSKITHAGSGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDV--AGLKAHMLKHAASLAPKFERVL 327 (422)
T ss_dssp EEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcChhhhcCcccceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCc--chHHHHHHHHHHHHHHHHHHHH
Confidence 55666899997789999999999999988876555567889999999988887521 2222 33333444555
Q ss_pred HHHHHHHHhcCCeee-EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 389 ERLTALKDKYGIIGD-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 389 ~~L~~l~~~~~~i~~-vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+.|.+...+++.+.- .+..|+++++++... + ...+.+.|.++||++.+
T Consensus 328 ~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~------~---~~~~~~~l~~~gV~v~~ 376 (422)
T 3d6k_A 328 EILDSRLSEYGVAKWTSPTGGYFISVDVVPG------T---ASRVVELAKEAGIALTG 376 (422)
T ss_dssp HHHHHHHGGGTCEEECCCSBSSCEEEEESTT------C---HHHHHHHHHHTTEECCC
T ss_pred HHHHHhcCcCCceEEeCCCcceEEEEECCCC------C---HHHHHHHHHHCCeEEEc
Confidence 555554333333332 234688999998421 1 34577888999999976
No 124
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.88 E-value=7.8e-23 Score=207.20 Aligned_cols=277 Identities=12% Similarity=0.032 Sum_probs=177.6
Q ss_pred CCCeEEEecCCcccccCCC--CCHHHHHHHHH-HHHhcccccccc-cchHHHHHHHHHHHhCCC------CCceEEE--c
Q 013235 97 NGRRYLDAFGGIATVCCGH--CHPYVVDSIVN-QIKRIQHSTVLY-LNHAIADFAEALASKMPG------NLKVVFF--T 164 (447)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh--~~p~v~~A~~~-~l~~~~~~~~~~-~~~~~~elae~L~~~~~~------~~~~v~~--~ 164 (447)
+|+.+|||..|.....-|+ .+|.|.+|+.+ +++.. ....| +.....++.+.+++++.. ..++|++ +
T Consensus 27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~--~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t 104 (412)
T 1yaa_A 27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSS--YNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQS 104 (412)
T ss_dssp CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTT--CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcc--cccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEec
Confidence 3566789888875333343 46899999988 77531 11123 233456677777766521 2467999 9
Q ss_pred CCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHH
Q 013235 165 NSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQ 244 (447)
Q Consensus 165 ~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le 244 (447)
+||++|++.++++++...+++.|++.+++|++....+...+. .+..++..+. ..++.| .++|+
T Consensus 105 ~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~-----------~~~~v~~~~~--~~~~~d----~~~l~ 167 (412)
T 1yaa_A 105 LSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGL-----------KTATYPYWAN--ETKSLD----LNGFL 167 (412)
T ss_dssp EHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTC-----------CEEEEECEET--TTTEEC----HHHHH
T ss_pred cchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCc-----------eEEEEeeecC--CCCccC----HHHHH
Confidence 999999999988776666778999999999987654433211 1222222010 112234 56777
Q ss_pred HHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccC--CCcccccc-cCCCC----
Q 013235 245 DLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTG--SHFWGFEA-HGVVP---- 317 (447)
Q Consensus 245 ~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G--~~~~~~~~-~gv~p---- 317 (447)
+.+....+ ..+++++...++++|.+. +.+.+++|.++|++||+++|+||+|.+|++.| ...+.+.. .+..+
T Consensus 168 ~~l~~~~~-~~~~~~~~~p~nPtG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (412)
T 1yaa_A 168 NAIQKAPE-GSIFVLHSCAHNPTGLDP-TSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSP 245 (412)
T ss_dssp HHHHHSCT-TCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCC
T ss_pred HHHHhCCC-CCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcc
Confidence 77764321 234555455566677654 67889999999999999999999999997654 01222211 11223
Q ss_pred C--EEEeeccccC-Cccccccc--c-----CHH----HHHhhcCCcccccCCCChHHHHHHHHHHHHHh--------hhh
Q 013235 318 D--IVTMAKGIGN-GIPLGAVV--T-----TPE----IAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--------KDK 375 (447)
Q Consensus 318 D--ivt~sK~lg~-G~pigav~--~-----~~~----i~~~l~~~~~~~T~~~np~a~aaala~L~~i~--------~~~ 375 (447)
+ +.+++|.++. |+|+|+++ + +++ +++.+.......+.+.|+++++++.++|+... -++
T Consensus 246 ~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 325 (412)
T 1yaa_A 246 VFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVT 325 (412)
T ss_dssp EEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred eEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2 3368999997 99999998 7 566 77666542222334458899999888887542 123
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013235 376 LQNNAHVVGSYLKERLTAL 394 (447)
Q Consensus 376 l~~~~~~~g~~l~~~L~~l 394 (447)
+.++++++.+++.+.|+++
T Consensus 326 ~~~~~~~~~~~l~~~L~~~ 344 (412)
T 1yaa_A 326 MSSRITKMRHALRDHLVKL 344 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4556666667777776664
No 125
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.88 E-value=1e-21 Score=199.38 Aligned_cols=308 Identities=11% Similarity=0.012 Sum_probs=190.8
Q ss_pred CCeEEEecCCcc---cccCCCCCHHHHHHHHHHHHhccccccccc-chHHHHHHHHHHHhCC--CCCc---eEEEcCCHH
Q 013235 98 GRRYLDAFGGIA---TVCCGHCHPYVVDSIVNQIKRIQHSTVLYL-NHAIADFAEALASKMP--GNLK---VVFFTNSGT 168 (447)
Q Consensus 98 G~~ylD~~~g~~---~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~-~~~~~elae~L~~~~~--~~~~---~v~~~~sGs 168 (447)
|..+|||..|.. ...+. .++.|.+|+.+..... ...|. .....+|.+.+++++. .+.+ +|++++||+
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~-~~~~v~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~ 112 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLV-FLKTVKEEYLSLSDSE---HVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGT 112 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBC-CCHHHHHHHHTCCHHH---HHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHH
T ss_pred CCCeEECCCCcccCCCCCcc-ccHHHHHHHHHhcccc---cCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchH
Confidence 446677776643 12223 5677877776543321 11121 2223445555554331 0234 899999999
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235 169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID 248 (447)
Q Consensus 169 eA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~ 248 (447)
+|++.+++... .+++.|++.+++|++....+... |...+..|.... .|+.| .+++++.+.
T Consensus 113 ~al~~~~~~l~--~~gd~Vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~~-~~~~d----~~~l~~~l~ 172 (418)
T 3rq1_A 113 GGIHHLIHNYT--EPGDEVLTADWYWGAYRVICSDT-------------GRTLVTYSLFDE-HNNFN----HEAFQNRVN 172 (418)
T ss_dssp HHHHHHHHHHS--CTTCEEEEESSCCTHHHHHHHHT-------------TCEEEEECSBCT-TSSBC----HHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCCEEEECCCCchhHHHHHHHc-------------CCEEEEEeeeCC-CCCcC----HHHHHHHHH
Confidence 99999998553 35688999999998876654433 222222222111 13345 556666665
Q ss_pred cc-CCCCeEEEEEc-cccCCCceeeCCCChHHHHHHHHH------HhCCEEEEeccccCccccCCC--cccccccCCCCC
Q 013235 249 FG-TSGHVAGFLSE-SIQGVGGIIELAPGYLPAVYKSIK------KAGGLCIADEVQAGFARTGSH--FWGFEAHGVVPD 318 (447)
Q Consensus 249 ~~-~~~~~aavi~E-pi~~~gG~~~~~~~~l~~l~~l~~------~~g~llI~DEv~tGfgr~G~~--~~~~~~~gv~pD 318 (447)
.. .++..++++++ |.++++|.+. +.+.+++|.++|+ +||+++|+||+|.+|++.|.. .+.....++.+|
T Consensus 173 ~~~~~~~~~~vi~~~p~~NPtG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~ 251 (418)
T 3rq1_A 173 ELAAKQTNVVVIFNTPGNNPTGYSI-EDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKE 251 (418)
T ss_dssp HHHHHCSEEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTT
T ss_pred HhhccCCCEEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCC
Confidence 31 01244466665 5478888776 6677999999999 899999999999999877621 122233456667
Q ss_pred ---EE--Eeecccc-CCcccccccc---CHHHHHhhcCCcc---cccC-CCChHHHHHHHHHHHHHh------h--hhHH
Q 013235 319 ---IV--TMAKGIG-NGIPLGAVVT---TPEIAEVLTRRNY---FNTF-GGNPVCTAAGHAVLKVIQ------K--DKLQ 377 (447)
Q Consensus 319 ---iv--t~sK~lg-~G~pigav~~---~~~i~~~l~~~~~---~~T~-~~np~a~aaala~L~~i~------~--~~l~ 377 (447)
++ +|||.++ .|+|+|++++ ++++++.+..... ..++ ..++++++++.+.|+..+ + +++.
T Consensus 252 ~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 331 (418)
T 3rq1_A 252 ILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYY 331 (418)
T ss_dssp EEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 33 6899998 7999999999 9999988764321 1233 578888888887774321 1 1344
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 378 NNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 378 ~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
++++++.+++.+.|+++ .+..+ ....|+++.+++. + ..++.+.|.++||++.+
T Consensus 332 ~~~~~~~~~l~~~L~~~--g~~~~--~~~~~~~~~~~~~--------~---~~~~~~~l~~~gi~v~~ 384 (418)
T 3rq1_A 332 QLIRDRADIFKQEAAQV--GLPML--PYRGGFFITIPTD--------S---ANAICEELKKEHIYVIA 384 (418)
T ss_dssp HHHHHHHHHHHHHHHHH--TCCCC--CCCSSSEEEEECT--------T---HHHHHHHHHHTTEECEE
T ss_pred HHHHHHHHHHHHHHHhc--CCCCC--CCCceEEEEcCCC--------C---HHHHHHHHHhCCEEEec
Confidence 56666677777777665 33322 2233555555541 1 35677889999999875
No 126
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.88 E-value=1.2e-21 Score=196.71 Aligned_cols=299 Identities=12% Similarity=0.061 Sum_probs=194.9
Q ss_pred EEEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHH
Q 013235 92 YLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEAN 171 (447)
Q Consensus 92 ~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~ 171 (447)
.++|.+++.+.++...++..+++|..++..+. ..+++++|++.++.. +.++|++||++|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~-------------------~~~~~~~l~~~~~~~-~~v~~~~sgt~a~ 64 (379)
T 3ke3_A 5 LRQDIDPNGLLEYSVVYTDRALNHMSKAFQEV-------------------MNDLLSNLKTVYNAE-AAVIIPGSGTYGM 64 (379)
T ss_dssp ---CCSTTSCCCCCSSCCTTSCCTTSHHHHHH-------------------HHHHHHHHHHHHTCS-EEEEEESCHHHHH
T ss_pred hhccCCHHHHHHHHHhccCCCCCCCCHHHHHH-------------------HHHHHHHHHHHhCCC-CEEEEcCChhHHH
Confidence 46799999999998777777788887765532 234566677777654 6789999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCC----CcCCCC-CCChHHHHHHHHHH
Q 013235 172 ELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPD----PYRGVF-GADGEMYAKDVQDL 246 (447)
Q Consensus 172 e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~----~~~~~~-~~d~~~~~~~le~~ 246 (447)
+++++.+ .++++||+++++|||.....+...... ...+..++.+. .++.+| ..| .+++++.
T Consensus 65 ~~~~~~~---~~gd~vi~~~~~~~~~~~~~~~~~~g~-------~~~~~~~~~~~~g~~~~~~~~~~~d----~~~l~~~ 130 (379)
T 3ke3_A 65 EAVARQL---TIDEDCLIIRNGWFSYRWTQILEKGKF-------AKSSTVLTAERTEDTEAPKPFAPVD----IETAVAK 130 (379)
T ss_dssp HHHHHHH---CTTCEEEEEECSHHHHHHHHHHHHHCC-------SSEEEEEECEESSCCSSCCCEECCC----HHHHHHH
T ss_pred HHHHHhC---CCCCeEEEEeCCchhHHHHHHHHHhCC-------CCceEEEeccccccccccCCCCCCC----HHHHHHH
Confidence 9998643 467899999999998764433221100 00122232211 111111 134 5677777
Q ss_pred HHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccc
Q 013235 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGI 326 (447)
Q Consensus 247 i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~l 326 (447)
+... ++.+|++..+.+.+|.+. |.+++++|.++|++||+++|+||+|+ | + ..+..+.+++...+.+++|.+
T Consensus 131 i~~~---~~~~v~~~~~~~~~G~~~-~~~~l~~i~~~~~~~~~~li~D~~~~--g--~-~~~~~~~~~~d~~~~s~~K~l 201 (379)
T 3ke3_A 131 IKED---KSAIVYAPHVETSSGIIL-SEEYIKALSEAVHSVGGLLVIDCIAS--G--C-VWLDMKELGIDVLISAPQKGW 201 (379)
T ss_dssp HHHH---TCSEEEEESEETTTTEEC-CHHHHHHHHHHHHHTTCEEEEECTTC--T--T-CCCCHHHHTCSEEEECTTTTT
T ss_pred Hhhc---CCcEEEEEeecCCCceeC-CHHHHHHHHHHHHHcCCEEEEEeccc--C--C-ccccccccCCCEEEecchhhc
Confidence 7532 345677777777788665 67899999999999999999999996 3 3 345556667633334455999
Q ss_pred cCCccccccccCHHHHHhhcCC---cc-------------------cccCCCChHHHHHHHHHHHHHhhh---hHHHHHH
Q 013235 327 GNGIPLGAVVTTPEIAEVLTRR---NY-------------------FNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAH 381 (447)
Q Consensus 327 g~G~pigav~~~~~i~~~l~~~---~~-------------------~~T~~~np~a~aaala~L~~i~~~---~l~~~~~ 381 (447)
+++.++|++++++++++.+... .+ ..+++.|+.++++..++|+.++++ ++.++.+
T Consensus 202 ~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~ 281 (379)
T 3ke3_A 202 SSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQW 281 (379)
T ss_dssp CSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 8777789999999998877541 11 012356778888888999988765 5677788
Q ss_pred HHHHHHHHHHHHHHHhcCCeeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 382 VVGSYLKERLTALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 382 ~~g~~l~~~L~~l~~~~~~i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
++.++|+++|+++ .+..+..- ...+.+..+.+ + ... ..+.+.|.++||++.+
T Consensus 282 ~l~~~l~~~l~~~--g~~~~~~~~~~~~~i~~~~~--~------~~~--~~~~~~L~~~Gi~v~~ 334 (379)
T 3ke3_A 282 ELGNRVRKVLTDK--GIESVAAEGFEAPGVVVSYT--E------RDD--MHKGSAFAEAGLQIAA 334 (379)
T ss_dssp HHHHHHHHHHHHT--TCCBSBCTTCBCSSEEEEEC--S------CHH--HHSSHHHHHTTCCCEE
T ss_pred HHHHHHHHHHHHc--CCEecCCccccCceEEEEcc--C------Ccc--hHHHHHHHHCCeEEeC
Confidence 8888888888876 33332211 01122333322 1 111 1236778899998865
No 127
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.88 E-value=5.9e-22 Score=198.40 Aligned_cols=284 Identities=11% Similarity=0.044 Sum_probs=193.5
Q ss_pred CCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCc-eEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013235 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK-VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194 (447)
Q Consensus 116 ~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~-~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~y 194 (447)
.+|+|.+|+.+++.. |... ...+...+++++|++.++...+ .++|++||++|++.+++.+ ..++++|++...+|
T Consensus 34 ~~~~v~~a~~~~~~~--~~~~-~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~--~~~gd~vl~~~~~~ 108 (393)
T 3kgw_A 34 LAPRVLAAGSLRMIG--HMQK-EMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNL--LEPGDSFLTGTNGI 108 (393)
T ss_dssp CCHHHHHHTTCCCCC--TTSH-HHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHH--CCTTCEEEEEESSH
T ss_pred CCHHHHHHhcccccC--cccH-HHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhc--CCCCCEEEEEeCCc
Confidence 679999888765322 2111 1245667899999998865443 5899999999999999976 44678899999998
Q ss_pred ccCchhhh-hccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCC
Q 013235 195 HGNAAGTM-GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA 273 (447)
Q Consensus 195 HG~~~~~~-~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~ 273 (447)
||...... ...+. .+..++.+ .. +..| .++|++.+... ++++|++++.++++|.+.+
T Consensus 109 ~~~~~~~~~~~~g~----------~~~~~~~~--~~--~~~d----~~~l~~~i~~~---~~~~v~~~~~~nptG~~~~- 166 (393)
T 3kgw_A 109 WGMRAAEIADRIGA----------RVHQMIKK--PG--EHYT----LQEVEEGLAQH---KPVLLFLVHGESSTGVVQP- 166 (393)
T ss_dssp HHHHHHHHHHHTTC----------EEEEEECC--TT--CCCC----HHHHHHHHHHH---CCSEEEEESEETTTTEECC-
T ss_pred hhHHHHHHHHHcCC----------ceEEEeCC--CC--CCCC----HHHHHHHHhhC---CCcEEEEeccCCcchhhcc-
Confidence 76532221 11110 12223221 11 1134 57788777642 5678899999999998876
Q ss_pred CChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhhcCCcc-
Q 013235 274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRNY- 350 (447)
Q Consensus 274 ~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l~~~~~- 350 (447)
+++|.++|++||+++|+||+|+ +| + ..+..+.+ .+|+++++ |+++++.++|++++++++++.+.....
T Consensus 167 ---l~~i~~l~~~~~~~li~De~~~-~g--~-~~~~~~~~--~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~ 237 (393)
T 3kgw_A 167 ---LDGFGELCHRYQCLLLVDSVAS-LG--G-VPIYMDQQ--GIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTK 237 (393)
T ss_dssp ---CTTHHHHHHHTTCEEEEECTTT-TT--T-SCCCTTTT--TCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSC
T ss_pred ---HHHHHHHHHHcCCEEEEECCcc-cc--C-cccchhhc--CCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCC
Confidence 8899999999999999999996 32 1 22333333 35888766 999887789999999999988754211
Q ss_pred ----------------------cccCCCChHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhcCCee-e-
Q 013235 351 ----------------------FNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIG-D- 403 (447)
Q Consensus 351 ----------------------~~T~~~np~a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~-~- 403 (447)
..+++.|+.+++++.++++.+++ +++.++++++.+++.+.|+++ .+.... +
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~ 315 (393)
T 3kgw_A 238 PVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM--GLKFFVKDP 315 (393)
T ss_dssp CSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSSSSG
T ss_pred CCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--CCeeccCCh
Confidence 12345678888888899988765 456788888888888888876 332221 1
Q ss_pred EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235 404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS 445 (447)
Q Consensus 404 vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~ 445 (447)
....+.++.+.+.+. ....++.+.|+++ ||++.+
T Consensus 316 ~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~gi~v~~ 350 (393)
T 3kgw_A 316 EIRLPTITTVTVPAG--------YNWRDIVSYVLDHFSIEISG 350 (393)
T ss_dssp GGBCSSEEEEECCTT--------BCHHHHHHHHHHHHCEECBC
T ss_pred hhcCCeEEEEeCCCC--------CCHHHHHHHHHHhCCEEEeC
Confidence 122356666776321 1145788899988 999875
No 128
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.88 E-value=6.2e-23 Score=209.13 Aligned_cols=312 Identities=13% Similarity=0.052 Sum_probs=201.8
Q ss_pred EEEecCCcccccCCCCCHHHHHHH--HHHHHhcccccccccc-hHHHHHHHHHHHhCCCCCceEEEcCCHHHHH--HHHH
Q 013235 101 YLDAFGGIATVCCGHCHPYVVDSI--VNQIKRIQHSTVLYLN-HAIADFAEALASKMPGNLKVVFFTNSGTEAN--ELAI 175 (447)
Q Consensus 101 ylD~~~g~~~~~lGh~~p~v~~A~--~~~l~~~~~~~~~~~~-~~~~elae~L~~~~~~~~~~v~~~~sGseA~--e~Ai 175 (447)
.|||..|.....+...++.+.+++ .+++.........|.. ....+|++.|+++++.+.++|++++++++++ +.++
T Consensus 35 ~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~ 114 (427)
T 3ppl_A 35 KLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVIS 114 (427)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHH
T ss_pred eEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHH
Confidence 578877665443332233465555 4444432222234443 4567899999998877778999999999999 5777
Q ss_pred HHHHhh-cC---------CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHH
Q 013235 176 MMARLY-TG---------CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD 245 (447)
Q Consensus 176 k~ar~~-t~---------~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~ 245 (447)
+..... ++ ++.|++.+++|++........ |...+..|.... +.| .++|++
T Consensus 115 ~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~---g~d----~~~l~~ 174 (427)
T 3ppl_A 115 WSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERF-------------GFEMISVPMNED---GPD----MDAVEE 174 (427)
T ss_dssp HHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHT-------------TCEEEEEEEETT---EEC----HHHHHH
T ss_pred HHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHc-------------CCEEEEeCCCCC---CCC----HHHHHH
Confidence 765432 21 688999999999876554433 222222221111 123 567777
Q ss_pred HHHccCCCCeEEEEEcc-ccCCCceeeCCCChHHHHHHHH-HHhCCEEEEeccccCccccCCC-----cccc----cccC
Q 013235 246 LIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSI-KKAGGLCIADEVQAGFARTGSH-----FWGF----EAHG 314 (447)
Q Consensus 246 ~i~~~~~~~~aavi~Ep-i~~~gG~~~~~~~~l~~l~~l~-~~~g~llI~DEv~tGfgr~G~~-----~~~~----~~~g 314 (447)
.+. ..++.+|+++| .++++|.+. +.+.+++|.++| ++||+++|+||+|+++...+.. ++.+ +..+
T Consensus 175 ~l~---~~~~~~v~~~p~~~NPtG~~~-~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (427)
T 3ppl_A 175 LVK---NPQVKGMWVVPVFSNPTGFTV-TEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPN 250 (427)
T ss_dssp HTT---STTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTT
T ss_pred HHh---cCCCeEEEECCCCCCCCCccC-CHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCC
Confidence 763 23678888887 667788776 566799999999 9999999999999985443311 1111 1334
Q ss_pred CCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHH---hh--hhHHHHHHHHHHHHHH
Q 013235 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI---QK--DKLQNNAHVVGSYLKE 389 (447)
Q Consensus 315 v~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i---~~--~~l~~~~~~~g~~l~~ 389 (447)
...++.+|||.+++|+++|++++++++++.+.......+++.+++++.++.+.|+.. ++ .+..+.+++..+.+.+
T Consensus 251 ~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (427)
T 3ppl_A 251 RFWAFTSTSKITLAGAGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLE 330 (427)
T ss_dssp SEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEechhhccCcCccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455666899997789999999999999988876555678889999999888877531 11 1122333334444444
Q ss_pred HHHHHHHhcCCee-eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 390 RLTALKDKYGIIG-DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 390 ~L~~l~~~~~~i~-~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
.|.+.....+.+. ..+..|+++++++... ...++.+.|.++||++.+
T Consensus 331 ~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~---------~~~~~~~~l~~~gv~v~~ 378 (427)
T 3ppl_A 331 ILDSRLAEYGVAQWTVPAGGYFISLDVVPG---------TASRVAELAKEAGIALTG 378 (427)
T ss_dssp HHHHHHGGGTCCEECCCSBSSCEEEECSTT---------CHHHHHHHHHHTTEECCC
T ss_pred HHHHhcCCCCceEEeCCCccEEEEEECCcc---------hHHHHHHHHHHCCCEEec
Confidence 4444322222222 2344589999988421 135678889999999975
No 129
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.88 E-value=1.4e-21 Score=193.55 Aligned_cols=297 Identities=14% Similarity=0.086 Sum_probs=197.9
Q ss_pred EEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCC--CceEEEcCCHHHHHHHHHHHH
Q 013235 101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMA 178 (447)
Q Consensus 101 ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~--~~~v~~~~sGseA~e~Aik~a 178 (447)
++||..| +++ .+|+|.+|+.+++ .|....+.++...+++++|+++++.. .+.++|++||++|++.+++.+
T Consensus 5 ~~~~~~g----p~~-~~~~v~~a~~~~~---~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~ 76 (366)
T 1m32_A 5 YLLLTPG----PLT-TSRTVKEAMLFDS---CTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSA 76 (366)
T ss_dssp CEECSSS----SCC-CCHHHHHTTCCCC---CTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHS
T ss_pred cccccCC----CcC-CCHHHHHHHhhhh---cCCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHh
Confidence 5787766 334 7899999987753 23211122266788999999988621 247999999999999999977
Q ss_pred HhhcCCCeEEEEcCCcccCchh-hhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEE
Q 013235 179 RLYTGCNDIISLRNAYHGNAAG-TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG 257 (447)
Q Consensus 179 r~~t~~~~ii~~~~~yHG~~~~-~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aa 257 (447)
+. ++++|++.++.||+.... .....+. .+..++... .+..| .++|++.+... .++.+
T Consensus 77 ~~--~gd~vi~~~~~~~~~~~~~~~~~~g~----------~~~~v~~~~----~~~~d----~~~l~~~l~~~--~~~~~ 134 (366)
T 1m32_A 77 LG--PQDKVLIVSNGAYGARMVEMAGLMGI----------AHHAYDCGE----VARPD----VQAIDAILNAD--PTISH 134 (366)
T ss_dssp CC--TTCCEEEEESSHHHHHHHHHHHHHTC----------CEEEEECCT----TSCCC----HHHHHHHHHHC--TTCCE
T ss_pred cC--CCCeEEEEeCCCccHHHHHHHHHhCC----------ceEEEeCCC----CCCCC----HHHHHHHHhcC--CCeEE
Confidence 42 556788888888875322 1111111 223333221 12234 56788777642 13455
Q ss_pred EEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE--eeccccCCcccccc
Q 013235 258 FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGAV 335 (447)
Q Consensus 258 vi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pigav 335 (447)
|++...++++|.+.+ +++|.++|++||+++|+||+|+ +|... +..+. ..+|+++ ++|.++++.++|++
T Consensus 135 v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~~---~~~~~--~~~di~~~s~~K~~~~~~g~G~~ 204 (366)
T 1m32_A 135 IAMVHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGIP---MDIAA--LHIDYLISSANKCIQGVPGFAFV 204 (366)
T ss_dssp EEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC---CCTTT--TTCSEEEEESSSTTCCCSSEEEE
T ss_pred EEEecccCCcceecC----HHHHHHHHHHcCCEEEEECCcc-ccCcC---ccccc--cCccEEEecCcccccCCCceEEE
Confidence 656666667888876 9999999999999999999996 44332 12222 2478885 67999877778999
Q ss_pred ccCHHHHHhhcCCc--c----------------cccCCCChHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHH
Q 013235 336 VTTPEIAEVLTRRN--Y----------------FNTFGGNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLTA 393 (447)
Q Consensus 336 ~~~~~i~~~l~~~~--~----------------~~T~~~np~a~aaala~L~~i~~~----~l~~~~~~~g~~l~~~L~~ 393 (447)
++++++++.+.... + ...++.|+.+++++.++|+.+++. ++.++.+++.+++.+.|++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~ 284 (366)
T 1m32_A 205 IAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRA 284 (366)
T ss_dssp EEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHH
Confidence 99999887765421 0 013678899999999999887654 4677888888888888877
Q ss_pred HHHhcCCeeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 394 LKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 394 l~~~~~~i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+ .+...... ...|+++++++.+... ....++.+.|.++||++.+
T Consensus 285 ~--~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~gi~v~~ 329 (366)
T 1m32_A 285 L--GFNTLLDDELHSPIITAFYSPEDPQ------YRFSEFYRRLKEQGFVIYP 329 (366)
T ss_dssp T--TCCBSSCGGGBCSSEEEEECCCCTT------CCHHHHHHHHHHTTEECEE
T ss_pred C--CCeeccCchhcCceEEEEEcCccCC------CCHHHHHHHHHHCCEEEEC
Confidence 5 33322211 1246788888742000 1145788999999999865
No 130
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.88 E-value=5.6e-21 Score=192.77 Aligned_cols=303 Identities=16% Similarity=0.071 Sum_probs=198.3
Q ss_pred CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc-ccccc-----cchHHHHHHHHHHHhCCCCCceEEEcCCHHHH
Q 013235 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-STVLY-----LNHAIADFAEALASKMPGNLKVVFFTNSGTEA 170 (447)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~-~~~~~-----~~~~~~elae~L~~~~~~~~~~v~~~~sGseA 170 (447)
++..|||+.++. +.+|+|.+|+.++++.... ....| ..+...+++++|+++++.+.+.|+|++||+++
T Consensus 25 ~~~~~ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 98 (406)
T 3cai_A 25 DGWVHFDAPAGM------LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVL 98 (406)
T ss_dssp SSCEECBGGGCC------CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHH
T ss_pred CCeEEEeCCCcC------CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHH
Confidence 357889987543 4789999999999986421 11122 24567889999999987666789999999999
Q ss_pred HHHHHHHH-HhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235 171 NELAIMMA-RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF 249 (447)
Q Consensus 171 ~e~Aik~a-r~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~ 249 (447)
++.+++.. +...+++.|++..++|++.......+.... ...+..++.. +. .+..| .++|++.+.
T Consensus 99 l~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~-------g~~v~~v~~~-~~--~~~~d----~~~l~~~l~- 163 (406)
T 3cai_A 99 LSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRY-------GAKVKWAEVD-IE--TGELP----TWQWESLIS- 163 (406)
T ss_dssp HHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHH-------BCEEEEECCC-TT--TCCCC----GGGHHHHCC-
T ss_pred HHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhc-------CCeEEEEecC-cc--cCCcC----HHHHHHHhC-
Confidence 99998854 234466889999999987654433221000 0012223221 01 11123 456666653
Q ss_pred cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE--eecccc
Q 013235 250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIG 327 (447)
Q Consensus 250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg 327 (447)
.++++|+++++++++|.+.+ +++|.++|+++|+++|+||+|+ +|.. .+..+.++ +|+++ ++|.+|
T Consensus 164 ---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~---~~~~~~~~--~d~~~~s~~K~~g 230 (406)
T 3cai_A 164 ---KSTRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYR---LLDIRETD--ADVVTVNAHAWGG 230 (406)
T ss_dssp ---TTEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTC---CCCHHHHC--CSEEEEEGGGGTS
T ss_pred ---CCceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC---CCCchhcC--CCEEEeehhhhcC
Confidence 26789999999999998876 8999999999999999999996 3322 12233344 68876 469775
Q ss_pred CCcccc-ccccCHHHHHhhcCCcc---------cccCCCChHHHHHHHHHHHHHhh-----------------hhHHHHH
Q 013235 328 NGIPLG-AVVTTPEIAEVLTRRNY---------FNTFGGNPVCTAAGHAVLKVIQK-----------------DKLQNNA 380 (447)
Q Consensus 328 ~G~pig-av~~~~~i~~~l~~~~~---------~~T~~~np~a~aaala~L~~i~~-----------------~~l~~~~ 380 (447)
.+ +| ++++++++++.+....+ +..+..|+.+++++.++|+.+++ +++.++.
T Consensus 231 ~~--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 308 (406)
T 3cai_A 231 PP--IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYL 308 (406)
T ss_dssp CS--CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHH
T ss_pred CC--cCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHH
Confidence 43 89 99999999887765321 11344578888888888887764 2345556
Q ss_pred HHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 381 HVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 381 ~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+++.+++.+.|+++. .+.......+.+.++.+.+... ...++.+.|.++||++..
T Consensus 309 ~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~L~~~gi~v~~ 363 (406)
T 3cai_A 309 NRVFDYLMVSLRSLP-LVMLIGRPEAQIPVVSFAVHKV---------PADRVVQRLADNGILAIA 363 (406)
T ss_dssp HHHHHHHHHHHHTCT-TEEECCCCSSBCSEEEEEETTB---------CHHHHHHHHHHTTEECEE
T ss_pred HHHHHHHHHHHhcCC-CeEEcCCccccCCEEEEEECCc---------CHHHHHHHHHHCCcEEec
Confidence 666666666665531 1111111112345777776310 135688889999999875
No 131
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.87 E-value=4.2e-22 Score=203.77 Aligned_cols=319 Identities=12% Similarity=0.053 Sum_probs=192.7
Q ss_pred CeEE-EecCCcccccCCCCCHHHHHHHHHHHHhcccc-------c------cccc-chHHHHHHHHHHHhC------CCC
Q 013235 99 RRYL-DAFGGIATVCCGHCHPYVVDSIVNQIKRIQHS-------T------VLYL-NHAIADFAEALASKM------PGN 157 (447)
Q Consensus 99 ~~yl-D~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~-------~------~~~~-~~~~~elae~L~~~~------~~~ 157 (447)
..+| ||..|... ..|.+.+++.+++.+.... . ..|. .....+|+++|++++ +.+
T Consensus 31 ~~~i~~l~~g~p~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~ 105 (444)
T 3if2_A 31 DQPVNMLGGGNPA-----KIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLT 105 (444)
T ss_dssp SSCCEECSCCCCC-----CCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCC
T ss_pred chhhhccCCCCCC-----cccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCC
Confidence 3466 77665442 1466666666665543221 1 1233 223456666666665 445
Q ss_pred CceEEEcCCHHHHHHHHHHHHHhhcCCC--------------eEEEE-cCCcccCchhhhhccCCCCccccccCCCeEee
Q 013235 158 LKVVFFTNSGTEANELAIMMARLYTGCN--------------DIISL-RNAYHGNAAGTMGATAQSNWKFNVVQTGVHHA 222 (447)
Q Consensus 158 ~~~v~~~~sGseA~e~Aik~ar~~t~~~--------------~ii~~-~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~ 222 (447)
.++|+|++||++|++.+++.... .++ .||+. .++|++.......... ....+...+
T Consensus 106 ~~~i~~t~G~t~al~~~~~~l~~--~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~-------~~~~~~~~~ 176 (444)
T 3if2_A 106 SENIALTNGSQNAFFYLFNLFGG--AFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQH-------FAAVLPHID 176 (444)
T ss_dssp GGGEEEESSHHHHHHHHHHHSSE--EEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCC-------EEECCCEEE
T ss_pred HHHEEEecCcHHHHHHHHHHHhC--CCccccccccccccccceEEEeCCCCccchhhcccccch-------hhccCceEE
Confidence 68899999999999999987642 222 46554 8899877654321100 001122222
Q ss_pred cCCCCc-CC--CCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccC
Q 013235 223 LNPDPY-RG--VFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG 299 (447)
Q Consensus 223 ~~p~~~-~~--~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG 299 (447)
+.|... .+ .|+.| .++|++.+....+ ++.+|+++..++++|.+. +.+.+++|.++|++||+++|+||+|..
T Consensus 177 ~~~~~~~~g~~~~~~d----~~~l~~~l~~~~~-~~~~v~i~~p~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~ 250 (444)
T 3if2_A 177 EVTHDGEEGFFKYRVD----FEALENLPALKEG-RIGAICCSRPTNPTGNVL-TDEEMAHLAEIAKRYDIPLIIDNAYGM 250 (444)
T ss_dssp EEEETTEEEEEEEECC----HHHHHTCHHHHTT-CEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTCT
T ss_pred ecccccccCccccCCC----HHHHHHHHHhcCC-CceEEEeCCCCCCCCCcC-CHHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 222100 00 12234 5667665432223 566666655567788765 677899999999999999999999964
Q ss_pred ccccCCCcccc--cccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhh---
Q 013235 300 FARTGSHFWGF--EAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD--- 374 (447)
Q Consensus 300 fgr~G~~~~~~--~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~--- 374 (447)
+. .+..+... ...+...++.+++|.+.+|+++|++++++++++.+....+..+++.++++++++.+.|+..+-.
T Consensus 251 ~~-~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 329 (444)
T 3if2_A 251 PF-PNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRIKQLS 329 (444)
T ss_dssp TT-TCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHHHHHH
T ss_pred cc-cccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcCchhHHH
Confidence 31 11011111 1233444566899986679999999999999998876556678889999999998888642211
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 375 --KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 375 --~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
.+.++++++.+.+.+.|.+.....++....+..|+++++++.... ....++.+.|.++||++.+
T Consensus 330 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~l~~~l~~~gi~v~~ 395 (444)
T 3if2_A 330 DNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLP-------ISTLDLYERLKAKGTLIVP 395 (444)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCS-------SCHHHHHHHHHHTTEECEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCC-------CCHHHHHHHHHHCCeEEec
Confidence 133344445555555555433222222223466899999884311 0145688889999999874
No 132
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.87 E-value=5.5e-21 Score=190.71 Aligned_cols=284 Identities=15% Similarity=0.119 Sum_probs=193.8
Q ss_pred CCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCC--ceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCC
Q 013235 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL--KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNA 193 (447)
Q Consensus 116 ~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~--~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~ 193 (447)
.+|+|.+|+.+++... . .....+...+++++|++.++.+. ++++|++||++|++ +++.+ ..++++|++.+++
T Consensus 13 ~~~~v~~a~~~~~~~~--~-~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~--~~~gd~vi~~~~~ 86 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGF--T-SKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSL--LKPNDKILVVSNG 86 (384)
T ss_dssp CCHHHHHHTTCCSCCT--T-SHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGG--CCTTCEEEEECSS
T ss_pred CCHHHHHHhhcccccc--c-cHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhh--cCCCCEEEEecCC
Confidence 5789988887765321 1 11235667889999999987665 78999999999999 88644 4567889999999
Q ss_pred cccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCC
Q 013235 194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA 273 (447)
Q Consensus 194 yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~ 273 (447)
||+.....+... .|...+..|.... +..| .+++++.+... ++++|+++++++++|.+.+
T Consensus 87 ~~~~~~~~~~~~-----------~g~~~~~v~~~~~--~~~d----~~~l~~~i~~~---~~~~v~~~~~~nptG~~~~- 145 (384)
T 3zrp_A 87 VFGDRWEQIFKR-----------YPVNVKVLRPSPG--DYVK----PGEVEEEVRKS---EYKLVALTHVETSTGVREP- 145 (384)
T ss_dssp HHHHHHHHHHTT-----------SSCEEEEECCSTT--CCCC----HHHHHHHHHHS---CEEEEEEESEETTTTEECC-
T ss_pred cchHHHHHHHHH-----------cCCcEEEecCCCC--CCCC----HHHHHHHHHhC---CCcEEEEeCCCCCCceECc-
Confidence 998543322110 1222222222211 1234 67788887642 5789999999999998886
Q ss_pred CChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhh-cCC--
Q 013235 274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVL-TRR-- 348 (447)
Q Consensus 274 ~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l-~~~-- 348 (447)
+++|.++|++||+++|+||+|+ ++.. .+..+. ..+|+++++ |.++++.++|++++++++++.+ ...
T Consensus 146 ---l~~i~~l~~~~~~~li~D~a~~-~~~~---~~~~~~--~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~ 216 (384)
T 3zrp_A 146 ---VKDVINKIRKYVELIVVDGVSS-VGAE---EVKAEE--WNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSI 216 (384)
T ss_dssp ---HHHHHHHHGGGEEEEEEECTTT-TTTS---CCCTTT--TTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCS
T ss_pred ---HHHHHHHHHhcCCEEEEECccc-ccCc---cccccc--cCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCC
Confidence 9999999999999999999996 3221 111222 346888766 9998777899999999998776 110
Q ss_pred ---------------c----ccccC-CCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcCCeeeE-
Q 013235 349 ---------------N----YFNTF-GGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDV- 404 (447)
Q Consensus 349 ---------------~----~~~T~-~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v- 404 (447)
. ....+ +.|+.++++..++|+.+++. ++.++.+++.+++.+.|+++ .+......
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~ 294 (384)
T 3zrp_A 217 AGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL--GLEIVARRP 294 (384)
T ss_dssp CCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSCSSG
T ss_pred CcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC--CCeEccCcc
Confidence 0 11223 44666777777888877654 56788888888888888876 33322211
Q ss_pred -eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235 405 -RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ 446 (447)
Q Consensus 405 -rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~ 446 (447)
...+.++.+.+... ...++.+.|+++||++.+.
T Consensus 295 ~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~g 328 (384)
T 3zrp_A 295 ESYSNTVTGVILKVA---------DPQKVLAGTVNEGVEFAPG 328 (384)
T ss_dssp GGBCSSEEEEECSSS---------CHHHHHHHHHTTTCCCEEC
T ss_pred cccCccEEEEECCCC---------CHHHHHHHHHHCCEEEecC
Confidence 22466777776321 1467899999999998753
No 133
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.87 E-value=1e-21 Score=198.93 Aligned_cols=315 Identities=11% Similarity=0.001 Sum_probs=188.5
Q ss_pred CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc------ccccccc-chHHHHHHHHHHHhC------CCCCceEEEcC
Q 013235 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ------HSTVLYL-NHAIADFAEALASKM------PGNLKVVFFTN 165 (447)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~------~~~~~~~-~~~~~elae~L~~~~------~~~~~~v~~~~ 165 (447)
..++||..|.... .|.+.+++.+++.+.. .....|. .....+|++.|++++ +.+.++|+|++
T Consensus 31 ~~~i~l~~g~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~ 105 (417)
T 3g7q_A 31 PGAIMLGGGNPAH-----IPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTN 105 (417)
T ss_dssp -CCEECSCCCCCC-----CHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred CCceEecCcCCCC-----CChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeC
Confidence 4578887765421 3555555555444321 0011233 334567777777765 45567899999
Q ss_pred CHHHHHHHHHHHHHhhc---CCCeEEEE-cCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHH
Q 013235 166 SGTEANELAIMMARLYT---GCNDIISL-RNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAK 241 (447)
Q Consensus 166 sGseA~e~Aik~ar~~t---~~~~ii~~-~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~ 241 (447)
||++|++.+++...... ++++|++. .++||+....+...... . ..+....+.+.. ...|..| .+
T Consensus 106 G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~-~~~~~~d----~~ 173 (417)
T 3g7q_A 106 GSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLF-----V--SARPNIELLPEG-QFKYHVD----FE 173 (417)
T ss_dssp CHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCE-----E--ECCCEEEEEGGG-EEEEECC----GG
T ss_pred CcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhh-----c--cccCcccccCCc-ccccccC----HH
Confidence 99999999999775321 11277776 99999876554322110 0 001111111110 0011123 23
Q ss_pred HHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccc--cccCCCCCE
Q 013235 242 DVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGF--EAHGVVPDI 319 (447)
Q Consensus 242 ~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~--~~~gv~pDi 319 (447)
+++ + ..++.+++++..++++|.+. +++.+++|.++|++||+++|+||+|..+. .+..+... ...+....+
T Consensus 174 ~l~--~----~~~~~~v~~~~p~NptG~~~-~~~~~~~l~~~a~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~i~~ 245 (417)
T 3g7q_A 174 HLH--I----GEETGMICVSRPTNPTGNVI-TDEELMKLDRLANQHNIPLVIDNAYGVPF-PGIIFSEARPLWNPNIILC 245 (417)
T ss_dssp GCC--C----CTTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTCTTT-TCCBCSCCCCCCCTTEEEE
T ss_pred Hhc--c----ccCceEEEECCCCCCCCCcc-CHHHHHHHHHHHHHcCCEEEEeCCCcccc-ccccccccccCCCCCEEEE
Confidence 343 1 23567777776678888776 67779999999999999999999996532 12111111 112222335
Q ss_pred EEeeccccCCccccccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHH
Q 013235 320 VTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK-----DKLQNNAHVVGSYLKERLTAL 394 (447)
Q Consensus 320 vt~sK~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~-----~~l~~~~~~~g~~l~~~L~~l 394 (447)
.++||...+|+|+|++++++++++.+....+..+++.++++++++.+.|+..+- +.+.++++++.+.+.+.|.+.
T Consensus 246 ~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 325 (417)
T 3g7q_A 246 MSLSKLGLPGSRCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRY 325 (417)
T ss_dssp EESGGGTCTTSCCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred EechhccCCCcceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689996557999999999999999887655667888899999999888863211 113344455555666666554
Q ss_pred HHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 395 KDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 395 ~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
..+.++....+..|+++++++.... ....++.+.|.++||++.+
T Consensus 326 l~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~l~~~l~~~gi~v~~ 369 (417)
T 3g7q_A 326 LSEERCLIHKPEGAIFLWLWFKDLP-------ITTELLYQRLKARGVLMVP 369 (417)
T ss_dssp CCTTTCEEECCCBSSEEEEECTTCS-------SCHHHHHHHHHHTTEECEE
T ss_pred cccCCceeeCCCcceEEEEEcCCCC-------CCHHHHHHHHHHCCEEEEC
Confidence 3322232233566889998884311 0135688889999999874
No 134
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.87 E-value=5e-21 Score=193.37 Aligned_cols=260 Identities=16% Similarity=0.034 Sum_probs=183.4
Q ss_pred cccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccc
Q 013235 133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF 212 (447)
Q Consensus 133 ~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~ 212 (447)
|...++.++...+|+++|+++++. +.+++++||++|++.+++.+ ..++++|++.+++||+.........
T Consensus 58 ~~y~r~~~~~~~~l~~~la~~~g~--~~~~~~~sGt~A~~~al~~~--~~~gd~Vi~~~~~y~~~~~~~~~~~------- 126 (392)
T 3qhx_A 58 YEYARTGNPTRTALEAALAAVEDA--AFGRAFSSGMAAADCALRAM--LRPGDHVVIPDDAYGGTFRLIDKVF------- 126 (392)
T ss_dssp BCBTTTCCHHHHHHHHHHHHHTTC--SEEEEESSHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHTG-------
T ss_pred ccccCCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHH--hCCCCEEEEeCCCcchHHHHHHHHH-------
Confidence 344556788889999999999864 46889999999999999866 3366899999999987544331110
Q ss_pred cccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235 213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (447)
Q Consensus 213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI 292 (447)
...|+.....|. +| .+++++.+. +++++|++|++++++|.+.+ +++|.++|++||+++|
T Consensus 127 --~~~g~~~~~v~~-------~d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~g~~li 185 (392)
T 3qhx_A 127 --TGWNVEYTPVAL-------AD----LDAVRAAIR----PTTRLIWVETPTNPLLSIAD----IAGIAQLGADSSAKVL 185 (392)
T ss_dssp --GGGTCEEEEECT-------TC----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEE
T ss_pred --HhcCcEEEEeCC-------CC----HHHHHHhhC----CCCeEEEEECCCCCCcEEec----HHHHHHHHHHcCCEEE
Confidence 011332222221 13 567777664 37899999999999999876 9999999999999999
Q ss_pred EeccccCccccCCCcccccccCCCCCEEE--eeccccC-C-ccccccccC-HHHHHhhcCCcccccCCCChHHHHHHHHH
Q 013235 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAV 367 (447)
Q Consensus 293 ~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pigav~~~-~~i~~~l~~~~~~~T~~~np~a~aaala~ 367 (447)
+||+|+.+ . ..+..+..+|+++ ++|.+++ | +++|+++++ +++++.+....+..++..+|+.+++++..
T Consensus 186 ~D~~~~~~-~------~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 258 (392)
T 3qhx_A 186 VDNTFASP-A------LQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRG 258 (392)
T ss_dssp EECTTTCT-T------TCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred EECCCccc-c------cCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhh
Confidence 99999632 1 1233345679987 8899996 4 789999987 68887776544556777889999998888
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE------------------eecceeEEEEEeeCCCCCCCCHHHH
Q 013235 368 LKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV------------------RGRGFLLGVEFVTDRQLKTPAKAET 429 (447)
Q Consensus 368 L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------------rg~Gl~~giel~~~~~~~~p~~~~~ 429 (447)
|+.++. ..++..++.+++.+.|+ +++.+..| +|.|.|++|++..+ ...+
T Consensus 259 l~~l~~--~~~~~~~~~~~l~~~L~----~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~-------~~~~ 325 (392)
T 3qhx_A 259 LKTLVL--RMQRHSENAAAVAEFLA----EHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAG-------RTAA 325 (392)
T ss_dssp HTTHHH--HHHHHHHHHHHHHHHHH----TCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTC-------HHHH
T ss_pred hhHHHH--HHHHHHHHHHHHHHHHh----cCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCc-------HHHH
Confidence 865432 23444555555555554 34445444 67799999999431 2345
Q ss_pred HHHHHHHHhCCceee
Q 013235 430 LYIMDKMKGICALFF 444 (447)
Q Consensus 430 ~~~~~~l~~~Gvlv~ 444 (447)
.++.+.|...|+.+.
T Consensus 326 ~~~~~~l~~~~~~~s 340 (392)
T 3qhx_A 326 EQLCAKTNIFILAES 340 (392)
T ss_dssp HHHHHHCSSSEECSC
T ss_pred HHHHHhCCCceECCC
Confidence 677777776666543
No 135
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.87 E-value=2.5e-21 Score=195.39 Aligned_cols=285 Identities=13% Similarity=0.105 Sum_probs=192.8
Q ss_pred CCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCce-EEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013235 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKV-VFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194 (447)
Q Consensus 116 ~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~-v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~y 194 (447)
.+|+|.+|+.+++ ..|.... ......+++++|++.++.+.+. +++++||++|++.+++.+ ..++++|++.+++|
T Consensus 24 ~~~~v~~a~~~~~--~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~--~~~gd~Vl~~~~~~ 98 (411)
T 3nnk_A 24 ADPRVLRAMSSQL--IGQYDPA-MTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSA--IRPGDKVLVPVFGR 98 (411)
T ss_dssp CCHHHHHHHTSCC--CCTTCHH-HHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEEECSH
T ss_pred CCHHHHHHhhccc--cccccHH-HHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHh--cCCCCEEEEecCCc
Confidence 5789998887654 2222111 2355678999999988755444 789999999999999977 34778999999999
Q ss_pred ccCchhh-hhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCC
Q 013235 195 HGNAAGT-MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA 273 (447)
Q Consensus 195 HG~~~~~-~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~ 273 (447)
|+..... ....+ ..+..++.+. .+..| .++|++.+... ++++|+++++++++|.+.+
T Consensus 99 ~~~~~~~~~~~~g----------~~~~~v~~~~----~~~~d----~~~l~~~i~~~---~~~~v~~~~~~nptG~~~~- 156 (411)
T 3nnk_A 99 FGHLLCEIARRCR----------AEVHTIEVPW----GEVFT----PDQVEDAVKRI---RPRLLLTVQGDTSTTMLQP- 156 (411)
T ss_dssp HHHHHHHHHHHTT----------CEEEEEECCT----TCCCC----HHHHHHHHHHH---CCSEEEEESEETTTTEECC-
T ss_pred hHHHHHHHHHHcC----------CeEEEEecCC----CCCCC----HHHHHHHHhhC---CCeEEEEeCCCCCcceecc-
Confidence 9843211 11111 0122333221 11224 57777777642 5678899999999999876
Q ss_pred CChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEe--eccccCCccccccccCHHHHHhhcCCc--
Q 013235 274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIPLGAVVTTPEIAEVLTRRN-- 349 (447)
Q Consensus 274 ~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~pigav~~~~~i~~~l~~~~-- 349 (447)
+++|.++|++||+++|+||+++ +|. ..+..+.++ +|++++ +|.++++.++|++++++++++.+....
T Consensus 157 ---l~~i~~l~~~~~~~li~Dea~~-~~~---~~~~~~~~~--~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~ 227 (411)
T 3nnk_A 157 ---LAELGEICRRYDALFYTDATAS-LGG---NPLETDVWG--LDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCV 227 (411)
T ss_dssp ---CTTHHHHHHHHTCEEEEECTTT-BTT---BCCCTTTTT--CSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCC
T ss_pred ---HHHHHHHHHHcCCEEEEECCcc-cCC---cccchhccC--CcEEEecCccccCCCCceEEEEECHHHHHHHhhcccc
Confidence 8899999999999999999986 332 122233333 577765 498887778999999999988775421
Q ss_pred ----------------------------------ccccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHH
Q 013235 350 ----------------------------------YFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLT 392 (447)
Q Consensus 350 ----------------------------------~~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~ 392 (447)
...+++.|+.+++++.++|+.+.++ ++.++.+++.+++.+.|+
T Consensus 228 ~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~ 307 (411)
T 3nnk_A 228 EEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQ 307 (411)
T ss_dssp CGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 1122445788888888889887654 567788888888888888
Q ss_pred HHHHhcCCeee-EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeecc
Q 013235 393 ALKDKYGIIGD-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFSQ 446 (447)
Q Consensus 393 ~l~~~~~~i~~-vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~~ 446 (447)
++ ....... ....+.++.+.+.+. ....++.+.|+++ ||+++++
T Consensus 308 ~~--g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~~gi~v~~g 353 (411)
T 3nnk_A 308 AM--GLETFGDLKHKMNNVLGVVIPQG--------INGDQARKLMLEDFGIEIGTS 353 (411)
T ss_dssp HT--TCCBCSCGGGBCSSEEEEECCTT--------CCHHHHHHHHHHHHSEEEEEC
T ss_pred Hc--CCEeCCCcccccccEEEEECCCC--------CCHHHHHHHHHHhcCeEEeCc
Confidence 75 3322211 123467777776321 1145788888887 9998754
No 136
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.87 E-value=2.4e-21 Score=191.54 Aligned_cols=290 Identities=11% Similarity=0.001 Sum_probs=188.5
Q ss_pred EEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHh
Q 013235 101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL 180 (447)
Q Consensus 101 ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~ 180 (447)
++||.++. .|+.+|+|.+|+.+++..+ ....+..+...+++++|++.++.+.++++|++||++|++.+++.++.
T Consensus 15 ~i~l~~~~----~~~~~~~v~~a~~~~~~~~--~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~~ 88 (359)
T 1svv_A 15 PYSFVNDY----SVGMHPKILDLMARDNMTQ--HAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR 88 (359)
T ss_dssp CEECSCSC----SSCCCHHHHHHHHHHTTCC--CCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCC
T ss_pred eEEecCCC----cCCCCHHHHHHHHHHHhhc--cccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHhC
Confidence 56766533 4689999999999988753 22345577888999999998876677899999999999999998754
Q ss_pred hcCCCeEEEEcCCcccCchh-hhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc---CCCCeE
Q 013235 181 YTGCNDIISLRNAYHGNAAG-TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG---TSGHVA 256 (447)
Q Consensus 181 ~t~~~~ii~~~~~yHG~~~~-~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~---~~~~~a 256 (447)
++++|++.+++||+.... .+...+ ..+..++.. .+..| .++|++.+... ...+++
T Consensus 89 --~gd~vl~~~~~~~~~~~~~~~~~~g----------~~~~~v~~~-----~~~~d----~~~l~~~l~~~~~~~~~~~~ 147 (359)
T 1svv_A 89 --PWEAVIATQLGHISTHETGAIEATG----------HKVVTAPCP-----DGKLR----VADIESALHENRSEHMVIPK 147 (359)
T ss_dssp --TTEEEEEETTSHHHHSSTTHHHHTT----------CCEEEECCT-----TSCCC----HHHHHHHHHHSCSTTSCEEE
T ss_pred --CCCEEEEcccchHHHHHHHHHhcCC----------CeeEEEeCC-----CCeec----HHHHHHHHHHHHhccCCCce
Confidence 567899999999987653 111111 122333321 23334 56777777642 112478
Q ss_pred EEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCc--cccCCCcccccccC--CCCCEEEe--eccccCCc
Q 013235 257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF--ARTGSHFWGFEAHG--VVPDIVTM--AKGIGNGI 330 (447)
Q Consensus 257 avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGf--gr~G~~~~~~~~~g--v~pDivt~--sK~lg~G~ 330 (447)
+|++++. +++|.+. |++++++|.++|++||+++|+||+|.+| |+.+. . ....+ ..+|++++ .|. ++..
T Consensus 148 ~v~~~~~-~ptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~-~--~~~~~~~~~~d~~~~s~~K~-g~~~ 221 (359)
T 1svv_A 148 LVYISNT-TEVGTQY-TKQELEDISASCKEHGLYLFLDGARLASALSSPVN-D--LTLADIARLTDMFYIGATKA-GGMF 221 (359)
T ss_dssp EEEEESS-CTTSCCC-CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTC-C--CCHHHHHHHCSEEEEECTTT-TCSS
T ss_pred EEEEEcC-CCCceec-CHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCc-c--hhhhhhhhcCCEEEEecccC-CCCC
Confidence 8888887 5678766 4699999999999999999999999766 44441 1 12111 35788876 463 3234
Q ss_pred cccccccCHHHHHhhcCCc--ccccCCCChHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe
Q 013235 331 PLGAVVTTPEIAEVLTRRN--YFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIGDVR 405 (447)
Q Consensus 331 pigav~~~~~i~~~l~~~~--~~~T~~~np~a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr 405 (447)
.+|+++.++++++.+.... +..++..++...++..+. +++ +++.++++++.+++.+.| +. ..+..+. .
T Consensus 222 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~l~~~L-~~-~~~~~~~--~ 294 (359)
T 1svv_A 222 GEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVL---MKDNLFFELGAHSNKMAAILKAGL-EA-CGIRLAW--P 294 (359)
T ss_dssp CEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHH---TSTTHHHHHHHHHHHHHHHHHHHH-HH-TTCCBSS--C
T ss_pred ceEEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHh-cc-CCeEEcc--C
Confidence 5688888988876654321 223333232222322222 333 346677888888888888 43 2332221 2
Q ss_pred ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Ccee
Q 013235 406 GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALF 443 (447)
Q Consensus 406 g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv 443 (447)
..+.++.+.+. .++.+.|+++ ||++
T Consensus 295 ~~~~~~~~~~~-------------~~~~~~l~~~~gi~v 320 (359)
T 1svv_A 295 SASNQLFPILE-------------NTMIAELNNDFDMYT 320 (359)
T ss_dssp CSSSEECBEEE-------------HHHHHHHTTTEECEE
T ss_pred CccceEEEEcC-------------HHHHHHHHHhcCEEE
Confidence 23455555541 3688899999 9987
No 137
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.87 E-value=8.2e-21 Score=190.50 Aligned_cols=297 Identities=12% Similarity=0.047 Sum_probs=200.2
Q ss_pred CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHH
Q 013235 98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177 (447)
Q Consensus 98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ 177 (447)
...|||..+ .++.+|.|.+|+.+++.. +. .....+...+++++|+++++.+.+++++++||++|++.+++.
T Consensus 8 ~~~yl~~~~------~~~~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~ 78 (392)
T 2z9v_A 8 DPVITLTAG------PVNAYPEVLRGLGRTVLY--DY-DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAAS 78 (392)
T ss_dssp CCSEECSSS------CCCCCHHHHHHTTSCCCC--TT-SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHH
T ss_pred CcceeecCC------CcCCCHHHHHHHhccccc--cc-cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHH
Confidence 446888642 246889999998876653 21 111244677899999999976667899999999999999987
Q ss_pred HHhhcCCCeEEEEcCCcccCchhhh-hccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeE
Q 013235 178 ARLYTGCNDIISLRNAYHGNAAGTM-GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA 256 (447)
Q Consensus 178 ar~~t~~~~ii~~~~~yHG~~~~~~-~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a 256 (447)
+ ..++++|++.+++||+.....+ ...+. .+..++.+. . +..| .++|++.+++. .+++
T Consensus 79 ~--~~~gd~Vl~~~~~~~~~~~~~~~~~~g~----------~~~~v~~~~--~--~~~d----~~~l~~~l~~~--~~~~ 136 (392)
T 2z9v_A 79 L--ISPDDVVLNLASGVYGKGFGYWAKRYSP----------HLLEIEVPY--N--EAID----PQAVADMLKAH--PEIT 136 (392)
T ss_dssp H--CCTTCCEEEEESSHHHHHHHHHHHHHCS----------CEEEEECCT--T--SCCC----HHHHHHHHHHC--TTCC
T ss_pred h--cCCCCEEEEecCCcccHHHHHHHHHcCC----------ceEEeeCCC--C--CCCC----HHHHHHHHhcC--CCCc
Confidence 6 3456789999999998631111 11111 233333221 1 1134 56777777531 2567
Q ss_pred EEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEe--eccccCCccccc
Q 013235 257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIPLGA 334 (447)
Q Consensus 257 avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~piga 334 (447)
+|++++.++++|.+.+ +++|.++|++||+++|+||+|+ +|.. .+..+.+ .+|++++ +|.++++.++|+
T Consensus 137 ~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~---~~~~~~~--~~d~~~~s~sK~~~~~~g~G~ 206 (392)
T 2z9v_A 137 VVSVCHHDTPSGTINP----IDAIGALVSAHGAYLIVDAVSS-FGGM---KTHPEDC--KADIYVTGPNKCLGAPPGLTM 206 (392)
T ss_dssp EEEEESEEGGGTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTB---SCCGGGG--TCSEEEECSSSTTCCCSCCEE
T ss_pred EEEEeccCCCCceecc----HHHHHHHHHHcCCeEEEEcccc-cCCc---ccccccc--cceEEEecCcccccCCCceeE
Confidence 8899999999998876 8999999999999999999996 4322 1222323 4788875 598887666799
Q ss_pred cccCHHHHHhhcCC--------------------cccccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHH
Q 013235 335 VVTTPEIAEVLTRR--------------------NYFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERL 391 (447)
Q Consensus 335 v~~~~~i~~~l~~~--------------------~~~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L 391 (447)
+++++++++.+... ....++..|+.+++++.++|+.+++. ++.++.+++.+++++.|
T Consensus 207 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L 286 (392)
T 2z9v_A 207 MGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGV 286 (392)
T ss_dssp EEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 99999988766421 01123345677777777888877553 46777888888888888
Q ss_pred HHHHHhcCCee-e-EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235 392 TALKDKYGIIG-D-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS 445 (447)
Q Consensus 392 ~~l~~~~~~i~-~-vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~ 445 (447)
+++ .+.... . ....+.++.+.+.+. ....++.+.|.++ ||++.+
T Consensus 287 ~~~--g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~~gi~v~~ 333 (392)
T 2z9v_A 287 TAM--GLSVWAASDSIASPTTTAVRTPDG--------VDEKALRQAARARYGVVFSS 333 (392)
T ss_dssp HHT--TCCBSSSSGGGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCEECEE
T ss_pred HHc--CCeeccCCccccCCceEEEECCCC--------CCHHHHHHHHHhcCCEEEec
Confidence 775 333222 1 012467777776311 0135788899998 999865
No 138
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.86 E-value=4.6e-21 Score=191.39 Aligned_cols=284 Identities=15% Similarity=0.103 Sum_probs=182.3
Q ss_pred cCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEc
Q 013235 112 CCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLR 191 (447)
Q Consensus 112 ~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~ 191 (447)
.+++++|.+.+++.+++.+.......++.+...+++++|+++++. +.+++++||++|++.|++.++ ..++++|++..
T Consensus 6 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~~~sGt~al~~al~~~~-~~~gd~Vi~~~ 82 (367)
T 3nyt_A 6 DLKNQQARIKDKIDAGIQRVLRHGQYILGPEVTELEDRLADFVGA--KYCISCANGTDALQIVQMALG-VGPGDEVITPG 82 (367)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHTT-CCTTCEEEEES
T ss_pred cccccccccCHHHHHHHHHHHhcCCccCChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhC-CCCcCEEEECC
Confidence 456666555555555444332212334577889999999999854 478999999999999999774 33567899999
Q ss_pred CCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceee
Q 013235 192 NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIE 271 (447)
Q Consensus 192 ~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~ 271 (447)
.+|++........ |...+..+... ..+..| .+++++.+. +++++|++++ ..|...
T Consensus 83 ~~~~~~~~~~~~~-------------G~~~~~~~~~~-~~~~~d----~~~l~~~i~----~~~~~v~~~~---~~G~~~ 137 (367)
T 3nyt_A 83 FTYVATAETVALL-------------GAKPVYVDIDP-RTYNLD----PQLLEAAIT----PRTKAIIPVS---LYGQCA 137 (367)
T ss_dssp SSCTHHHHHHHHT-------------TCEEEEECBCT-TTCSBC----GGGTGGGCC----TTEEEECCBC---GGGCCC
T ss_pred CccHHHHHHHHHc-------------CCEEEEEecCC-ccCCcC----HHHHHHhcC----cCCcEEEeeC---CccChh
Confidence 9998766554332 22222211111 012224 345555542 3677887443 345443
Q ss_pred CCCChHHHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCCEEEee----ccccC-Ccccccccc-CHHHHHh
Q 013235 272 LAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA----KGIGN-GIPLGAVVT-TPEIAEV 344 (447)
Q Consensus 272 ~~~~~l~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pDivt~s----K~lg~-G~pigav~~-~~~i~~~ 344 (447)
.+++|.++|++||+++|+||+|+ |+...| ...+...|++++| |.+++ |. .|++++ ++++++.
T Consensus 138 ----~~~~i~~la~~~~~~li~D~a~~~g~~~~~------~~~~~~~di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~ 206 (367)
T 3nyt_A 138 ----DFDAINAIASKYGIPVIEDAAQSFGASYKG------KRSCNLSTVACTSFFPSAPLGCYGD-GGAIFTNDDELATA 206 (367)
T ss_dssp ----CHHHHHHHHHHTTCCBEEECTTTTTCEETT------EETTSSSSEEEEECCTTSSSCCSSC-CEEEEESCHHHHHH
T ss_pred ----hHHHHHHHHHHcCCEEEEECccccCCeECC------eeccCCCCEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHH
Confidence 39999999999999999999996 332233 2233344999987 99998 76 777777 5777766
Q ss_pred hcCCc-c-----------cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCee-eEeecceeE
Q 013235 345 LTRRN-Y-----------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG-DVRGRGFLL 411 (447)
Q Consensus 345 l~~~~-~-----------~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~-~vrg~Gl~~ 411 (447)
+.... + +.++..+++.++++++.|+.+ +++.++.+++.+++++.|.++.-..+... .......++
T Consensus 207 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 284 (367)
T 3nyt_A 207 IRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIF--EEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQY 284 (367)
T ss_dssp HHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSE
T ss_pred HHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEE
Confidence 54311 1 246788999999999998866 34667788888899998887621111111 111112233
Q ss_pred EEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeeccC
Q 013235 412 GVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQY 447 (447)
Q Consensus 412 giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~~ 447 (447)
.+.+. ...++.+.|.++||.++..|
T Consensus 285 ~~~~~-----------~~~~l~~~L~~~GI~~~~~~ 309 (367)
T 3nyt_A 285 TVRMD-----------NRESVQASLKAAGVPTAVHY 309 (367)
T ss_dssp EEECS-----------SHHHHHHHHHHHTCCCBCSC
T ss_pred EEEeC-----------CHHHHHHHHHHCCCceeccC
Confidence 33331 14578899999999887543
No 139
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.86 E-value=7.5e-21 Score=189.70 Aligned_cols=288 Identities=13% Similarity=0.024 Sum_probs=178.1
Q ss_pred CCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCC--ceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCC
Q 013235 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNL--KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNA 193 (447)
Q Consensus 116 ~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~--~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~ 193 (447)
.+|+|.+|+.+++.. |... ...+...+++++|++.++.+. +.+++++||++|++.+++.+. .++++||+.+++
T Consensus 30 ~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~--~~gd~vi~~~~~ 104 (376)
T 3f0h_A 30 SSEEVRAIGAEQVPY--FRTT-EFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF--TKKDKVLVIDGG 104 (376)
T ss_dssp CCHHHHHHHTSCCCC--CSSH-HHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC--CTTCCEEEEESS
T ss_pred CcHHHHHHhcCCCCC--CCCH-HHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc--CCCCeEEEEeCC
Confidence 578999888776532 2211 123566788889998875432 456669999999999998764 367889999999
Q ss_pred cccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCC
Q 013235 194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA 273 (447)
Q Consensus 194 yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~ 273 (447)
||+.......... ...+..++.+. .+..| .+++++.+. .++++|+++++++++|.+.+
T Consensus 105 ~~~~~~~~~~~~~---------g~~~~~v~~~~----~~~~d----~~~l~~~~~----~~~~~v~~~~~~nptG~~~~- 162 (376)
T 3f0h_A 105 SFGHRFVQLCEIH---------EIPYVALKLEH----GKKLT----KEKLYEYDN----QNFTGLLVNVDETSTAVLYD- 162 (376)
T ss_dssp HHHHHHHHHHHHT---------TCCEEEEECCT----TCCCC----HHHHHTTTT----SCCCEEEEESEETTTTEECC-
T ss_pred hhhHHHHHHHHHc---------CCceEEEeCCC----CCCCC----HHHHHHhhc----cCceEEEEecccCCcceecC-
Confidence 9885432111110 01223333321 12234 456665432 36778999988999999886
Q ss_pred CChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeeccccCCccccccccCHHHHHhhcCCcc---
Q 013235 274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNY--- 350 (447)
Q Consensus 274 ~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~pigav~~~~~i~~~l~~~~~--- 350 (447)
+++|.++|++||+++|+||+|+++++. +..+.+++...+.+++|.++++.++|++++++++++.+.....
T Consensus 163 ---l~~i~~l~~~~~~~li~D~~~~~~~~~----~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~ 235 (376)
T 3f0h_A 163 ---TMMIGEFCKKNNMFFVCDCVSAFLADP----FNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTM 235 (376)
T ss_dssp ---HHHHHHHHHHTTCEEEEECTTTTTTSC----CCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCS
T ss_pred ---HHHHHHHHHHcCCEEEEEcCccccCcc----ccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCce
Confidence 999999999999999999999865442 2344555533333456999876778999999999887764211
Q ss_pred --------------cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE-eecceeEEEEE
Q 013235 351 --------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV-RGRGFLLGVEF 415 (447)
Q Consensus 351 --------------~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v-rg~Gl~~giel 415 (447)
...+..+..+++++.++++.+++++..++..+....+++.|.+..++.+..... ...+.++.+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 315 (376)
T 3f0h_A 236 YFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVHP 315 (376)
T ss_dssp TTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEEE
T ss_pred eecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEeC
Confidence 113344455557777888887665333333333344444444433333311100 11222333321
Q ss_pred eeCCCCCCCCHHHHHHHHHHHHhC-Cceeecc
Q 013235 416 VTDRQLKTPAKAETLYIMDKMKGI-CALFFSQ 446 (447)
Q Consensus 416 ~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~~ 446 (447)
+. ....++.+.|+++ ||++.+.
T Consensus 316 --~~-------~~~~~l~~~l~~~~gi~v~~g 338 (376)
T 3f0h_A 316 --TT-------ANAYDIFLKLKDEYGIWICPN 338 (376)
T ss_dssp --SS-------SCHHHHHHHHHHHSSEECEEC
T ss_pred --CC-------CCHHHHHHHHHHhCCEEEecC
Confidence 11 1145788999998 9998754
No 140
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.86 E-value=5.8e-21 Score=188.15 Aligned_cols=280 Identities=14% Similarity=0.058 Sum_probs=190.4
Q ss_pred CCHHHHHHHHHHHHhccccccccc--chHHHHHHHHHHHhCCCC--CceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEc
Q 013235 116 CHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYTGCNDIISLR 191 (447)
Q Consensus 116 ~~p~v~~A~~~~l~~~~~~~~~~~--~~~~~elae~L~~~~~~~--~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~ 191 (447)
.+|+|.+|+.+++.. | .++ .+...+++++|+++++.+ .+.+++++||++|++.+++.+. + ++|++.+
T Consensus 11 ~~~~v~~a~~~~~~~--~---~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~---~-d~vl~~~ 81 (353)
T 2yrr_A 11 IPERVQKALLRPMRG--H---LDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD---R-GPVLVLV 81 (353)
T ss_dssp CCHHHHGGGGSCCCC--T---TCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS---C-CCEEEEE
T ss_pred CCHHHHHHHhccccc--c---cCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc---C-CcEEEEc
Confidence 679999998877654 2 222 345789999999998653 5689999999999999998654 3 7899999
Q ss_pred CCcccCchh-hhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCcee
Q 013235 192 NAYHGNAAG-TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGII 270 (447)
Q Consensus 192 ~~yHG~~~~-~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~ 270 (447)
++||+.... .....+ ..+..++.+. .+..| .+++++.+... ++++|++++.++++|.+
T Consensus 82 ~~~~~~~~~~~~~~~g----------~~~~~v~~~~----~~~~d----~~~l~~~l~~~---~~~~v~~~~~~nptG~~ 140 (353)
T 2yrr_A 82 NGAFSQRVAEMAALHG----------LDPEVLDFPP----GEPVD----PEAVARALKRR---RYRMVALVHGETSTGVL 140 (353)
T ss_dssp CSHHHHHHHHHHHHTT----------CCEEEEECCT----TSCCC----HHHHHHHHHHS---CCSEEEEESEETTTTEE
T ss_pred CCCchHHHHHHHHHcC----------CceEEEeCCC----CCCCC----HHHHHHHHHhC---CCCEEEEEccCCCccee
Confidence 999986111 111111 1233333221 12234 56777777642 45688888899999988
Q ss_pred eCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEe--eccccCCccccccccCHHHHHhhcC-
Q 013235 271 ELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIPLGAVVTTPEIAEVLTR- 347 (447)
Q Consensus 271 ~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~pigav~~~~~i~~~l~~- 347 (447)
.+ +++|.++|++||+++|+||+| ++|... ...+.+ .+|++++ +|.++++.++|++++++++++.+..
T Consensus 141 ~~----~~~i~~l~~~~~~~li~D~a~-~~~~~~---~~~~~~--~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~ 210 (353)
T 2yrr_A 141 NP----AEAIGALAKEAGALFFLDAVT-TLGMLP---FSMRAM--GVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGK 210 (353)
T ss_dssp CC----HHHHHHHHHHHTCEEEEECTT-TTTTSC---CCHHHH--TCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCC
T ss_pred cC----HHHHHHHHHHcCCeEEEEcCc-cccccc---cccccc--CceEEEecCcccccCCCceEEEEECHHHHHHhccC
Confidence 76 899999999999999999999 576442 223333 3688875 5988765568999999999877651
Q ss_pred C--------------cccccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeeccee
Q 013235 348 R--------------NYFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFL 410 (447)
Q Consensus 348 ~--------------~~~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~ 410 (447)
. ....+++.|+.+++++.++|+.++++ ++.++.+++.+++.+.|+++ .+.........+.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~ 288 (353)
T 2yrr_A 211 RGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR--GFRPYPKASPLPTV 288 (353)
T ss_dssp SCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCEESCSSSBCTTE
T ss_pred CCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC--CCccccCccCCCeE
Confidence 0 11223455777888888888877554 45677888888888888775 33222111114556
Q ss_pred EEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 411 LGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 411 ~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+.+++.+. ....++.+.|.++||++.+
T Consensus 289 ~~~~~~~~--------~~~~~~~~~l~~~gi~v~~ 315 (353)
T 2yrr_A 289 LVVRPPEG--------VDADRLVRALYAEGVAVAG 315 (353)
T ss_dssp EEEECCTT--------CCHHHHHHHHHHTTEECEE
T ss_pred EEEECCCC--------CCHHHHHHHHHHCCEEEeC
Confidence 67776211 0145788999999999874
No 141
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.86 E-value=1.8e-20 Score=192.50 Aligned_cols=308 Identities=13% Similarity=0.042 Sum_probs=192.3
Q ss_pred CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHH
Q 013235 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM 176 (447)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik 176 (447)
.|+.||||.++.++..+ .+++.+++. .. . ......+...+|+++|+++++ .+.+++++||++|++.+++
T Consensus 40 ~~~~ylD~~~~~~~~~~---~~~~~~a~~----~~-~-~~y~~~~~~~~l~~~la~~~~--~~~~~~~~~gt~a~~~al~ 108 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNAM---SDKQWAGMM----MG-D-EAYAGSENFYHLERTVQELFG--FKHIVPTHQGRGAENLLSQ 108 (456)
T ss_dssp GGGCSEECSCSSSCCCC---CHHHHHHHT----TC-C-CCSSSCHHHHHHHHHHHHHHC--CSEEEEESSHHHHHHHHHH
T ss_pred cccceeeeccccCCccC---CHHHHHHhh----cc-h-hhcccChhHHHHHHHHHHHhC--CCcEEEeCCcHHHHHHHHH
Confidence 46789999988775432 466666654 21 1 112236678899999999985 4579999999999999998
Q ss_pred HHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCC-----CCcCC-CCCCChHHHHHHHHHHHHcc
Q 013235 177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNP-----DPYRG-VFGADGEMYAKDVQDLIDFG 250 (447)
Q Consensus 177 ~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p-----~~~~~-~~~~d~~~~~~~le~~i~~~ 250 (447)
.+. ++.+ |+..++||+.+..++...+.. +..++.. ..... .++.| .++|++.+...
T Consensus 109 ~l~---~~gd-i~~~~~~~~~~~~~~~~~G~~----------~~~v~~~~~~~~~~~~~~~~~~d----~~~l~~~i~~~ 170 (456)
T 2ez2_A 109 LAI---KPGQ-YVAGNMYFTTTRYHQEKNGAV----------FVDIVRDEAHDAGLNIAFKGDID----LKKLQKLIDEK 170 (456)
T ss_dssp HHC---CTTC-EEEESSCCHHHHHHHHHTTCE----------EEECBCGGGGCTTCCCSCTTCBC----HHHHHHHHHHH
T ss_pred HhC---CCCC-EeccccccchhHHHHHHcCCE----------EEEecccccccccccccccCCCC----HHHHHHHHHhc
Confidence 763 2333 788999988766555444321 1111110 00000 12334 56777777643
Q ss_pred CCCCeEEEEEc-cccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccC----------ccccCCCcccc-cccCCCCC
Q 013235 251 TSGHVAGFLSE-SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG----------FARTGSHFWGF-EAHGVVPD 318 (447)
Q Consensus 251 ~~~~~aavi~E-pi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG----------fgr~G~~~~~~-~~~gv~pD 318 (447)
.+..+++|+++ |+++++|. ..+.+++++|.++|++||+++|+||+|+. +.+.|..+..+ +..+..+|
T Consensus 171 t~~~~~~v~l~~p~n~ptG~-~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d 249 (456)
T 2ez2_A 171 GAENIAYICLAVTVNLAGGQ-PVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYAD 249 (456)
T ss_dssp CGGGEEEEEEESSBTTTTSB-CCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCS
T ss_pred cccceeEEEEeccCCCCCCc-cCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCC
Confidence 22356888888 66668886 45788999999999999999999999985 44555211111 12344589
Q ss_pred EEEee-ccccC-Ccccccccc-CHHHHHhhcCCc-c---cccCCC-ChHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHH
Q 013235 319 IVTMA-KGIGN-GIPLGAVVT-TPEIAEVLTRRN-Y---FNTFGG-NPVCTAA-GHAVLKVIQKDKLQNNAHVVGSYLKE 389 (447)
Q Consensus 319 ivt~s-K~lg~-G~pigav~~-~~~i~~~l~~~~-~---~~T~~~-np~a~aa-ala~L~~i~~~~l~~~~~~~g~~l~~ 389 (447)
++++| |.+++ | ..|++++ ++++++.+.... + ..++.+ |+..+++ +.+.++.++ +++.++.+++.+++++
T Consensus 250 ~~~~S~kk~~~~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~~~~~~~~~~l~~ 327 (456)
T 2ez2_A 250 GCTMSGKKDCLVN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYIEHRVKQVRYLGD 327 (456)
T ss_dssp EEEEETTTTTCCS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHH
T ss_pred EEEEeCcccCCCC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHH
Confidence 99885 66654 3 4788887 688877654311 1 123333 4444444 566665553 4677788888888888
Q ss_pred HHHHHHHhcCCeeeEeecceeEEEEEee--CCCCCCCCHHH-HHHHHHHH-HhCCcee
Q 013235 390 RLTALKDKYGIIGDVRGRGFLLGVEFVT--DRQLKTPAKAE-TLYIMDKM-KGICALF 443 (447)
Q Consensus 390 ~L~~l~~~~~~i~~vrg~Gl~~giel~~--~~~~~~p~~~~-~~~~~~~l-~~~Gvlv 443 (447)
.|+++ .+..+. ...|.++.+.+.. +... . ... ...+.+.| .++||.+
T Consensus 328 ~L~~~--g~~~~~--p~~~~~~~~~~~~~~~~~~--~-~~~~~~~l~~~L~~~~gv~~ 378 (456)
T 2ez2_A 328 KLKAA--GVPIVE--PVGGHAVFLDARRFCEHLT--Q-DEFPAQSLAASIYVETGVRS 378 (456)
T ss_dssp HHHHT--TCCBCS--SCCSSEEEEEHHHHTTTSC--G-GGCHHHHHHHHHHHHHSEEC
T ss_pred HHhcC--CCcccc--CCCceEEEEEhHHhcCCCC--h-hhccHHHHHHHHHHhcCeee
Confidence 88774 333322 3347777777642 1111 1 111 44567777 5789875
No 142
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.86 E-value=2.3e-20 Score=187.25 Aligned_cols=298 Identities=12% Similarity=0.054 Sum_probs=194.4
Q ss_pred cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCc-eEEEcCCHHHHHHHH
Q 013235 96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK-VVFFTNSGTEANELA 174 (447)
Q Consensus 96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~-~v~~~~sGseA~e~A 174 (447)
.+|+.|+|..+. ++ .+|+|.+|+.+++.. +. ..+..+...+++++|+++++.+.+ ++++++||++|++.+
T Consensus 16 ~~~~~~~~~~g~-----~~-~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~ 86 (393)
T 2huf_A 16 VTPNKLLMGPGP-----SN-APQRVLDAMSRPILG--HL-HPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEAT 86 (393)
T ss_dssp CCCCCEECSSSC-----CC-CCHHHHHHTTSCCCC--TT-SHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHH
T ss_pred CCCCeEEecCCC-----CC-CCHHHHHHHHhhhcc--CC-CHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHH
Confidence 456777765442 22 689999998776543 11 123456778999999999876554 799999999999999
Q ss_pred HHHHHhhcCCCeEEEEcCCcccCchhhh-hccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCC
Q 013235 175 IMMARLYTGCNDIISLRNAYHGNAAGTM-GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG 253 (447)
Q Consensus 175 ik~ar~~t~~~~ii~~~~~yHG~~~~~~-~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~ 253 (447)
++.+. .++++|++.+++||+.....+ ...+ ..+..++.+. .+..| .+++++.+...
T Consensus 87 ~~~~~--~~gd~vl~~~~~~~~~~~~~~~~~~g----------~~~~~v~~~~----~~~~d----~~~l~~~i~~~--- 143 (393)
T 2huf_A 87 LCNLL--EDGDVILIGHTGHWGDRSADMATRYG----------ADVRVVKSKV----GQSLS----LDEIRDALLIH--- 143 (393)
T ss_dssp HHHHC--CTTCEEEEEESSHHHHHHHHHHHHTT----------CEEEEEECCT----TCCCC----HHHHHHHHHHH---
T ss_pred HHHHh--CCCCEEEEECCCcchHHHHHHHHHcC----------CeeEEEeCCC----CCCCC----HHHHHHHHhcc---
Confidence 98763 356789999999998421111 0011 0122333211 11234 56777777531
Q ss_pred CeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEe--eccccCCcc
Q 013235 254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIP 331 (447)
Q Consensus 254 ~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~p 331 (447)
++.+|++++.++++|.+.+ +++|.++|++||+++|+||+|+ +|... +..+. ..+|++++ +|.++++.+
T Consensus 144 ~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~~~~---~~~~~--~~~d~~~~s~sK~l~g~~G 213 (393)
T 2huf_A 144 KPSVLFLTQGDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LGGAP---MFMDR--WEIDAMYTGSQKVLGAPPG 213 (393)
T ss_dssp CCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTBC---CCTTT--TTCSEEECCSSSTTCCCSS
T ss_pred CCcEEEEEccCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCCC---cchhh--cCccEEEECCCcccccCCC
Confidence 4567888888889999876 8899999999999999999985 54321 22222 24788875 499876555
Q ss_pred ccccccCHHHHHhhcCC-----cc-----------------cccCC-CChHHHHHHHHHHHHHhhh---hHHHHHHHHHH
Q 013235 332 LGAVVTTPEIAEVLTRR-----NY-----------------FNTFG-GNPVCTAAGHAVLKVIQKD---KLQNNAHVVGS 385 (447)
Q Consensus 332 igav~~~~~i~~~l~~~-----~~-----------------~~T~~-~np~a~aaala~L~~i~~~---~l~~~~~~~g~ 385 (447)
+|++++++++++.+... .+ ..+++ .|..+++++.++|+.+.++ ++.++.+++.+
T Consensus 214 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~ 293 (393)
T 2huf_A 214 ITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAK 293 (393)
T ss_dssp CEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred eEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 69999999998877542 11 11222 3556666666788877543 46677888888
Q ss_pred HHHHHHHHHHHhcCCeeeEe-ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeec
Q 013235 386 YLKERLTALKDKYGIIGDVR-GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFS 445 (447)
Q Consensus 386 ~l~~~L~~l~~~~~~i~~vr-g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~ 445 (447)
++.+.|+++ .+....... ..+.++.+.+... ....++.+.|+++ ||++.+
T Consensus 294 ~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~L~~~~gi~v~~ 345 (393)
T 2huf_A 294 RLYRGLQDA--GFELYADPKDRLSTVTTIKVPQG--------VDWLKAAQYAMKTYLVEISG 345 (393)
T ss_dssp HHHHHHHHT--TCCBSSCGGGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCEECBC
T ss_pred HHHHHHHHc--CCeeccCccccCCcEEEEEcCCC--------CCHHHHHHHHHHhCCEEEec
Confidence 888888776 333322111 1245677776311 0135688888875 999875
No 143
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.85 E-value=3.8e-20 Score=186.12 Aligned_cols=259 Identities=14% Similarity=0.066 Sum_probs=173.7
Q ss_pred cccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccc
Q 013235 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV 214 (447)
Q Consensus 135 ~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~ 214 (447)
..+|+++...+++++|+++++.+ + .++++||++|++.+++.+. .++++|++.+++||+..........
T Consensus 46 ~~~~~~~~~~~l~~~la~~~~~~-~-~i~~~sGt~a~~~~~~~~~--~~g~~vl~~~~~~~~~~~~~~~~~~-------- 113 (386)
T 1cs1_A 46 YSRRGNPTRDVVQRALAELEGGA-G-AVLTNTGMSAIHLVTTVFL--KPGDLLVAPHDCYGGSYRLFDSLAK-------- 113 (386)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCS-E-EEEESSHHHHHHHHHHHHC--CTTCEEEEETTCCHHHHHHHHHHHT--------
T ss_pred eeCCCCccHHHHHHHHHHHhCCC-c-EEEeCCHHHHHHHHHHHHh--CCCCEEEEecCCcHhHHHHHHHHHH--------
Confidence 34567788889999999998754 4 4455888999999999763 3568899999999874332111100
Q ss_pred cCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEe
Q 013235 215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD 294 (447)
Q Consensus 215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~D 294 (447)
..|+.....|. .| .+++++.+.. ++++|+++++++++|.+.+ +++|.++|++||+++|+|
T Consensus 114 -~~g~~~~~~~~-------~d----~~~l~~~i~~----~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D 173 (386)
T 1cs1_A 114 -RGCYRVLFVDQ-------GD----EQALRAALAE----KPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVD 173 (386)
T ss_dssp -TTSCEEEEECT-------TC----HHHHHHHHHT----CCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEE
T ss_pred -hcCCEEEEeCC-------CC----HHHHHHhhcc----CCcEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEE
Confidence 01222222221 13 5778877762 5789999999999999885 999999999999999999
Q ss_pred ccccCccccCCCcccccccCCCCCEE--EeeccccC-Cccc-cccccCH-HHHHhhcCCcccccCCCChHHHHHHHHHHH
Q 013235 295 EVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPL-GAVVTTP-EIAEVLTRRNYFNTFGGNPVCTAAGHAVLK 369 (447)
Q Consensus 295 Ev~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pi-gav~~~~-~i~~~l~~~~~~~T~~~np~a~aaala~L~ 369 (447)
|+|+++...- . . .+ .+|++ +++|.+++ |.++ |++++++ ++++.+....+..+++.||++++++++.++
T Consensus 174 e~~~~~~~~~--~--~-~~--~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 246 (386)
T 1cs1_A 174 NTFLSPALQN--P--L-AL--GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR 246 (386)
T ss_dssp CTTTCTTTCC--G--G-GG--TCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHT
T ss_pred CCCcccccCC--c--c-cc--CceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhccc
Confidence 9998775431 1 1 23 35666 68899986 4666 9998886 788877654344456689999988888876
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHH---h-cCCee----------eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHH
Q 013235 370 VIQKDKLQNNAHVVGSYLKERLTALKD---K-YGIIG----------DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDK 435 (447)
Q Consensus 370 ~i~~~~l~~~~~~~g~~l~~~L~~l~~---~-~~~i~----------~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~ 435 (447)
.+. ...++..+..+.+.+.|+++.. . ++.+. .+++.|.++.+++.+. ...+.+.
T Consensus 247 ~~~--~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 314 (386)
T 1cs1_A 247 TLV--PRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD----------EQTLRRF 314 (386)
T ss_dssp THH--HHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC----------HHHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC----------HHHHHHH
Confidence 542 2334444444555554444210 0 11111 1256799999997421 2456777
Q ss_pred HHhCCceee
Q 013235 436 MKGICALFF 444 (447)
Q Consensus 436 l~~~Gvlv~ 444 (447)
|.++||+++
T Consensus 315 l~~~gi~~~ 323 (386)
T 1cs1_A 315 LGGLSLFTL 323 (386)
T ss_dssp HHTCSSSEE
T ss_pred HHhCCcceE
Confidence 888999886
No 144
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.85 E-value=1.8e-20 Score=189.26 Aligned_cols=288 Identities=17% Similarity=0.106 Sum_probs=190.4
Q ss_pred CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHH
Q 013235 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA 178 (447)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~a 178 (447)
+.||||.+|.... + |+|.+|+.++++...+ +..+...+++++|+++++. +.+++++||++|++.+++.+
T Consensus 30 ~~~id~~~~~~~~--~---~~v~~a~~~~~~~~~y----~~~~~~~~l~~~la~~~~~--~~~v~~~~Gt~a~~~~l~~~ 98 (399)
T 2oga_A 30 VPFLDLKAAYEEL--R---AETDAAIARVLDSGRY----LLGPELEGFEAEFAAYCET--DHAVGVNSGMDALQLALRGL 98 (399)
T ss_dssp BCSCCHHHHHHHT--H---HHHHHHHHHHHHHTCC----SSSHHHHHHHHHHHHHTTS--SEEEEESCHHHHHHHHHHHT
T ss_pred CcccccCcCCCCC--C---HHHHHHHHHHHhcCCC----CCchhHHHHHHHHHHHHCC--CeEEEecCHHHHHHHHHHHh
Confidence 6799999877643 2 8999999998876322 2356788999999999864 36789999999999999876
Q ss_pred HhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEE
Q 013235 179 RLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF 258 (447)
Q Consensus 179 r~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aav 258 (447)
+ ..+++.|++..++||+..... ...+. .+..++.. . ..+..| .+++++.+.. ++++|
T Consensus 99 ~-~~~gd~vl~~~~~~~~~~~~~-~~~g~----------~~~~~~~~--~-~~~~~d----~~~l~~~i~~----~~~~v 155 (399)
T 2oga_A 99 G-IGPGDEVIVPSHTYIASWLAV-SATGA----------TPVPVEPH--E-DHPTLD----PLLVEKAITP----RTRAL 155 (399)
T ss_dssp T-CCTTCEEEEESSSCTHHHHHH-HHTTC----------EEEEECBC--S-SSSSBC----HHHHHHHCCT----TEEEE
T ss_pred C-CCCcCEEEECCCccHHHHHHH-HHCCC----------EEEEEecC--C-CCCCcC----HHHHHHhcCC----CCeEE
Confidence 3 235678999999999854332 22211 12222221 1 012234 5677776642 56777
Q ss_pred EEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCcc-ccCCCcccccccCCCCCEEEee----ccccC-Cccc
Q 013235 259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA-RTGSHFWGFEAHGVVPDIVTMA----KGIGN-GIPL 332 (447)
Q Consensus 259 i~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfg-r~G~~~~~~~~~gv~pDivt~s----K~lg~-G~pi 332 (447)
+++ +.+|.+.+ +++|.++|+++|+++|+||+|+.+. ..| ..++..+|++++| |.+++ | +.
T Consensus 156 ~~~---n~tG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~------~~~~~~~di~~~S~~~sK~~~~~G-~~ 221 (399)
T 2oga_A 156 LPV---HLYGHPAD----MDALRELADRHGLHIVEDAAQAHGARYRG------RRIGAGSSVAAFSFYPGKNLGCFG-DG 221 (399)
T ss_dssp CCB---CGGGCCCC----HHHHHHHHHHHTCEECEECTTCTTCEETT------EETTCTTCEEEEECCTTSSSCCSS-CC
T ss_pred EEe---CCcCCccC----HHHHHHHHHHcCCEEEEECcccccCccCC------eecccccCEEEEeCCCCccCCcCC-ce
Confidence 744 34676654 9999999999999999999996331 222 2234447999885 99997 8 89
Q ss_pred cccccC-HHHHHhhcCCc-c-----------cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 013235 333 GAVVTT-PEIAEVLTRRN-Y-----------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG 399 (447)
Q Consensus 333 gav~~~-~~i~~~l~~~~-~-----------~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~ 399 (447)
|+++++ +++++.+.... . ..++..++++++++.++|+.++ ++.++.+++.+++++.|.++. .+.
T Consensus 222 g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~-g~~ 298 (399)
T 2oga_A 222 GAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD--SWNGRRSALAAEYLSGLAGLP-GIG 298 (399)
T ss_dssp EEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHTTTCT-TCB
T ss_pred EEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCC-Ccc
Confidence 999886 88876654311 1 2235668999999999998664 356667777777777766531 111
Q ss_pred CeeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235 400 IIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ 446 (447)
Q Consensus 400 ~i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~ 446 (447)
..... .+.++++.+.+... ...++.+.|.++||+++..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~~~gI~v~~~ 337 (399)
T 2oga_A 299 LPVTAPDTDPVWHLFTVRTE---------RRDELRSHLDARGIDTLTH 337 (399)
T ss_dssp CCCCCTTEECCCSSEEEECS---------SHHHHHHHHHHTTBCCBCS
T ss_pred ccCCCCCCcceeEEEEEECC---------CHHHHHHHHHHCCCceecC
Confidence 11100 12233323444211 1457889999999998753
No 145
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.85 E-value=5.2e-21 Score=196.94 Aligned_cols=314 Identities=15% Similarity=0.060 Sum_probs=184.8
Q ss_pred CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHH
Q 013235 98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM 176 (447)
Q Consensus 98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik 176 (447)
|+.||||.++.++ |+|.+|+.+++.... ..| ..+...+|+++|+++++ .++++|++||+||++.|++
T Consensus 40 ~~~ylD~~~~~~~-------~~v~~a~~~~l~~~~---~~y~~~~~~~~l~~~la~~~~--~~~v~~t~~gt~A~~~al~ 107 (467)
T 2oqx_A 40 EDVFIDLLTDSGT-------GAVTQSMQAAMMRGD---EAYSGSRSYYALAESVKNIFG--YQYTIPTHQGRGAEQIYIP 107 (467)
T ss_dssp GGCSEECSCCSSC-------SCCCHHHHHHTTSCC---CCSSSCHHHHHHHHHHHHHHC--CSEEEEEC--CCSHHHHHH
T ss_pred CCeeEecccCCCc-------HHHHHHHHHHhccCc---ceeccCchhHHHHHHHHHHhC--cCcEEEcCCcHHHHHHHHH
Confidence 6689999887663 889999988875431 223 35677899999999985 4789999999999999999
Q ss_pred HHHhhc----C--C-CeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcC--CCCCCChHHHHHHHHHHH
Q 013235 177 MARLYT----G--C-NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYR--GVFGADGEMYAKDVQDLI 247 (447)
Q Consensus 177 ~ar~~t----~--~-~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~--~~~~~d~~~~~~~le~~i 247 (447)
.++..+ | + +.||.. .||+.+.............. ++.....+.... ..+..| .++|++.+
T Consensus 108 ~~~~~~~~~~G~~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d----~~~Le~~i 176 (467)
T 2oqx_A 108 VLIKKREQEKGLDRSKMVAFS--NYFFDTTQGHSQINGCTVRN-----VYIKEAFDTGVRYDFKGNFD----LEGLERGI 176 (467)
T ss_dssp HHHHHHHHHHCCCTTTCEEEE--SSCCHHHHHHHHHTTCEEEE-----CBCTTTTCTTSCCTTTTCBC----HHHHHHHH
T ss_pred HHhccccccCCCCccceEEec--ccccccchhhhhccCcceee-----ccccccccCCCCCCccCCcC----HHHHHHHH
Confidence 987652 4 2 556654 68876544332211110000 100000110000 011124 67788888
Q ss_pred HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccC----------ccccCCC--cccccccCC
Q 013235 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG----------FARTGSH--FWGFEAHGV 315 (447)
Q Consensus 248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG----------fgr~G~~--~~~~~~~gv 315 (447)
.....+++++|++|++++++|..+++.+++++|+++|++||++||+|++|.. .+..|.. .++.+.+ .
T Consensus 177 ~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~-~ 255 (467)
T 2oqx_A 177 EEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY-K 255 (467)
T ss_dssp HHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG-G
T ss_pred HhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhh-c
Confidence 6432236889999999888644566889999999999999999999976643 1333311 1110000 1
Q ss_pred CCCEE--EeeccccCCccccc-cccCHH-HHHhhcC---C----cccccCCCChHHHHHHHHH-HHHHhhhhHHHHHHHH
Q 013235 316 VPDIV--TMAKGIGNGIPLGA-VVTTPE-IAEVLTR---R----NYFNTFGGNPVCTAAGHAV-LKVIQKDKLQNNAHVV 383 (447)
Q Consensus 316 ~pDiv--t~sK~lg~G~piga-v~~~~~-i~~~l~~---~----~~~~T~~~np~a~aaala~-L~~i~~~~l~~~~~~~ 383 (447)
.+|++ +++|+++ .|+|+ ++++++ +++.+.. . ....++++.+.+..++++. |+...+++..++..++
T Consensus 256 ~~d~~~~s~sK~~g--~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~ 333 (467)
T 2oqx_A 256 YADMLAMSAKKDAM--VPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQ 333 (467)
T ss_dssp GCSEEEEESSSTTC--CSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCeEEEecccccC--CCCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHH
Confidence 24554 5678774 46554 556656 4443321 1 1123445444433333332 3332223455667788
Q ss_pred HHHHHHHHHHHHHhcCCeeeEeecceeEEEEEee--CCCCCCCCHHH-HHHHHHHH-HhCCceeec
Q 013235 384 GSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVT--DRQLKTPAKAE-TLYIMDKM-KGICALFFS 445 (447)
Q Consensus 384 g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~--~~~~~~p~~~~-~~~~~~~l-~~~Gvlv~~ 445 (447)
++++.+.|+++ .++.+ . ..|.++.+++.+ +.. +.... ..++.+.| .++||++.+
T Consensus 334 ~~~l~~~L~~~--~~~~~-~--~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~L~~~~gv~~~~ 391 (467)
T 2oqx_A 334 VQYLVDGLEEI--GVVCQ-Q--AGGHAAFVDAGKLLPHI---PADQFPAQALACELYKVAGIRAVE 391 (467)
T ss_dssp HHHHHHHHHHT--TCCEE-E--ECSSCEEEEHHHHSTTS---CGGGCHHHHHHHHHHHHHCEECEE
T ss_pred HHHHHHHHHHC--CCeee-c--CCceEEEEechhhcccC---CcccccHHHHHHHHHHhcCceecc
Confidence 89999999886 45444 3 345666676632 110 11111 45678888 889999864
No 146
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.85 E-value=4.8e-20 Score=186.22 Aligned_cols=291 Identities=12% Similarity=0.024 Sum_probs=190.8
Q ss_pred CCCCCHHHHHHHHHHHHhcccc-cccccchHHHHHHHHHHHhCCCCCceEE-EcCCHHHHHHHHHHHHHhhcCCCeEEEE
Q 013235 113 CGHCHPYVVDSIVNQIKRIQHS-TVLYLNHAIADFAEALASKMPGNLKVVF-FTNSGTEANELAIMMARLYTGCNDIISL 190 (447)
Q Consensus 113 lGh~~p~v~~A~~~~l~~~~~~-~~~~~~~~~~elae~L~~~~~~~~~~v~-~~~sGseA~e~Aik~ar~~t~~~~ii~~ 190 (447)
+++.++.+.+++.+++.+.... ......+...+++++|+++++.+.+.++ +++||++|++.+++.. ..++++|++.
T Consensus 15 ~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l--~~~gd~Vl~~ 92 (416)
T 3isl_A 15 MTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASV--IEPEDDVLIP 92 (416)
T ss_dssp CSSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEE
T ss_pred ecCCCcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHh--cCCCCEEEEe
Confidence 4444444445555555442111 1111245678899999999976656554 8999999999999865 4577899999
Q ss_pred cCCcccCchh-hhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCce
Q 013235 191 RNAYHGNAAG-TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGI 269 (447)
Q Consensus 191 ~~~yHG~~~~-~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~ 269 (447)
+++||+.... .....+. .+..++.+. . +..| .++|++.+.+. ++++|+++.+++++|.
T Consensus 93 ~~~~~~~~~~~~~~~~g~----------~~~~v~~~~--~--~~~d----~~~l~~~i~~~---~~~~v~~~~~~nptG~ 151 (416)
T 3isl_A 93 IYGRFGYLLTEIAERYGA----------NVHMLECEW--G--TVFD----PEDIIREIKKV---KPKIVAMVHGETSTGR 151 (416)
T ss_dssp ESSHHHHHHHHHHHHTTC----------EEEEEECCT--T--CCCC----HHHHHHHHHHH---CCSEEEEESEETTTTE
T ss_pred cCCcccHHHHHHHHhcCC----------eeEEEecCC--C--CCCC----HHHHHHHHhhC---CCcEEEEEccCCCCce
Confidence 9999983322 1111111 122333221 1 1124 56777777632 4578899999999998
Q ss_pred eeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhhcC
Q 013235 270 IELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTR 347 (447)
Q Consensus 270 ~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l~~ 347 (447)
+.+ +++|.++|++||+++|+||+|+ +|.. .+..+. ..+|+++++ |.+.++.++|++++++++++.+..
T Consensus 152 ~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~---~~~~~~--~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~ 221 (416)
T 3isl_A 152 IHP----LKAIGEACRTEDALFIVDAVAT-IGGC---EVKVDE--WKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAA 221 (416)
T ss_dssp ECC----CHHHHHHHHHTTCEEEEECTTT-TTTS---CCCTTT--TTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHT
T ss_pred ecC----HHHHHHHHHHcCCEEEEECCcc-ccCC---Ccchhh--cCCCEEEecCccccCCCCCeEEEEECHHHHHHhhc
Confidence 876 9999999999999999999996 3321 112222 236888755 988887889999999999877652
Q ss_pred C-------------------------------------c-ccccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHH
Q 013235 348 R-------------------------------------N-YFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSY 386 (447)
Q Consensus 348 ~-------------------------------------~-~~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~ 386 (447)
. . ....+..|..+++++.++|+.+++. ++.++.+++.++
T Consensus 222 ~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~ 301 (416)
T 3isl_A 222 RKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAA 301 (416)
T ss_dssp C------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1 0 1123345777888888888877654 677888888888
Q ss_pred HHHHHHHHHHhcCCeeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeecc
Q 013235 387 LKERLTALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFSQ 446 (447)
Q Consensus 387 l~~~L~~l~~~~~~i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~~ 446 (447)
+.+.|+++ .+...... ...+.++.+.+.+. ....++.+.|+++ ||++.+.
T Consensus 302 l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~~gi~v~~g 353 (416)
T 3isl_A 302 LAAGIKAM--GLRLFGDDSCKMPVVTCVEIPGG--------IDGESVRDMLLAQFGIEIASS 353 (416)
T ss_dssp HHHHHHHT--TCCBCSCGGGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCEECBCC
T ss_pred HHHHHHHc--CCEeccCccccCCcEEEEeCCCC--------CCHHHHHHHHHHhCCEEEecC
Confidence 88888875 33322211 12356777776321 1145788899887 9998753
No 147
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.85 E-value=4.9e-21 Score=193.86 Aligned_cols=272 Identities=17% Similarity=0.135 Sum_probs=173.3
Q ss_pred CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCC-CC-----CceEE--EcCCHHH
Q 013235 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMP-GN-----LKVVF--FTNSGTE 169 (447)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~-~~-----~~~v~--~~~sGse 169 (447)
..+|||..|.... ..++|.+.+++.++... ....| +.....+|.+.+++++. .. .++|. .+++|++
T Consensus 41 ~~~i~l~~g~~~d--~~~~~~v~~a~~~a~~~---~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~g 115 (409)
T 4eu1_A 41 KRKVNLSIGVYRD--DADQPFVLECVKQATLG---TNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTG 115 (409)
T ss_dssp SSCEECCCSSCCC--TTSCCCCCHHHHTCCCC---SCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHH
T ss_pred cCceeeeeeEEEC--CCCCEeecHHHHhcCcc---ccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchH
Confidence 3578888776411 23567788888776222 12233 23345677777777652 22 34564 4899999
Q ss_pred HHHHHHHHHHhhcC-CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235 170 ANELAIMMARLYTG-CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID 248 (447)
Q Consensus 170 A~e~Aik~ar~~t~-~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~ 248 (447)
|++++..+++.+.+ ++.|++.+++|++........ |...+..|......++.| .+++++.+.
T Consensus 116 a~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~l~ 178 (409)
T 4eu1_A 116 ALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKA-------------GMELTPYSYYDPATKGLN----LAGMLECLD 178 (409)
T ss_dssp HHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHT-------------TCEEEEECCEETTTTEEC----HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHc-------------CCeEEEEEeecCcCCcCc----HHHHHHHHH
Confidence 99999888777655 488999999998765544332 222222222111122334 677777776
Q ss_pred ccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC--Cccccc-ccCCCCCEE---Ee
Q 013235 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS--HFWGFE-AHGVVPDIV---TM 322 (447)
Q Consensus 249 ~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~--~~~~~~-~~gv~pDiv---t~ 322 (447)
... ++.+++++...++++|.+. +.+.+++|.++|++||+++|+||+|.+|++.+. ..+... ..+..++++ +|
T Consensus 179 ~~~-~~~~~i~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 256 (409)
T 4eu1_A 179 KAP-EGSVILVHACAHNPTGVDP-THDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSF 256 (409)
T ss_dssp HSC-TTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEEC
T ss_pred hCC-CCcEEEEECCCCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecC
Confidence 432 2445555444466677655 677899999999999999999999999976551 123332 235556665 68
Q ss_pred ecccc-CCcccccc---ccCHH----HHHhhcCCcccccCCCChHHHHHHHHHHHHHh--------hhhHHHHHHHHHHH
Q 013235 323 AKGIG-NGIPLGAV---VTTPE----IAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--------KDKLQNNAHVVGSY 386 (447)
Q Consensus 323 sK~lg-~G~pigav---~~~~~----i~~~l~~~~~~~T~~~np~a~aaala~L~~i~--------~~~l~~~~~~~g~~ 386 (447)
||.+| .|+|+|++ +.+++ +++.+.......+++.++++++++.++|+... -+++.++++++.++
T Consensus 257 SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (409)
T 4eu1_A 257 SKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKR 336 (409)
T ss_dssp TTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 79999995 67777 55555432234566677888888888886321 12345566666666
Q ss_pred HHHHHHHH
Q 013235 387 LKERLTAL 394 (447)
Q Consensus 387 l~~~L~~l 394 (447)
+.+.|+++
T Consensus 337 l~~~L~~~ 344 (409)
T 4eu1_A 337 LVSELKAC 344 (409)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 76666654
No 148
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.84 E-value=3e-20 Score=186.88 Aligned_cols=303 Identities=15% Similarity=0.123 Sum_probs=188.9
Q ss_pred EEecCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc------cccccccchHHHHHHHHHHHhCCCCCceEEEcCC
Q 013235 93 LFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ------HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNS 166 (447)
Q Consensus 93 l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~------~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~s 166 (447)
.++.++..|||+.++. ..+|.|.+|+.+++.... +....+..+...+++++|++.++.+.+++++++|
T Consensus 15 ~~~~~~~iyld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g 88 (400)
T 3vax_A 15 VPRGSHMTYLDAAATT------RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSG 88 (400)
T ss_dssp -------CCCCCCCCS------SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESC
T ss_pred CcccCCcEEecCCCCC------CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCC
Confidence 3566778899987543 478999999999987531 1111223456788999999999876678999999
Q ss_pred HHHHHHHHHHHHHhh--cCCC-eEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHH
Q 013235 167 GTEANELAIMMARLY--TGCN-DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDV 243 (447)
Q Consensus 167 GseA~e~Aik~ar~~--t~~~-~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~l 243 (447)
|++|++.+++.+..+ .+++ .|++....|++.......+.. .|...+..|... .+..| .++|
T Consensus 89 ~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~--~~~~d----~~~l 152 (400)
T 3vax_A 89 ATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAG----------RGFEVDFLTPGP--SGRIS----VEGV 152 (400)
T ss_dssp HHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHT----------TTCEEEEECCCT--TCCCC----HHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHh----------cCCeEEEEccCC--CCCcC----HHHH
Confidence 999999999976522 2456 888888888765443332211 122222222111 12224 5666
Q ss_pred HHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee
Q 013235 244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA 323 (447)
Q Consensus 244 e~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s 323 (447)
++.+. +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ ++.. ..+..+. +|++++|
T Consensus 153 ~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~-----~~~~~~~-~d~~~~s 217 (400)
T 3vax_A 153 MERLR----PDTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKV-----PGDLTTP-IDMISIS 217 (400)
T ss_dssp HTTCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTS-----GGGGGSC-CSEEEEE
T ss_pred HHhcC----CCceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCC-----CcChhhc-CcEEEEe
Confidence 66553 36789999999999998876 8999999999999999999996 3322 1222234 8999766
Q ss_pred --ccccCCccccccc-cCHH-HH---HhhcCCc-------ccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHH
Q 013235 324 --KGIGNGIPLGAVV-TTPE-IA---EVLTRRN-------YFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYL 387 (447)
Q Consensus 324 --K~lg~G~pigav~-~~~~-i~---~~l~~~~-------~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l 387 (447)
| +.|+.++|+++ ++++ +. ..+.... ...++..|+.++++..++++.+++ +++.++.+++.+++
T Consensus 218 ~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l 296 (400)
T 3vax_A 218 GHK-IGAPKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRL 296 (400)
T ss_dssp TGG-GTSCSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHH-hCCCCceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9 44434578887 7651 11 1122111 122444577888878888887755 45667777777788
Q ss_pred HHHHHHHHHhcCCeeeE-eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 388 KERLTALKDKYGIIGDV-RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 388 ~~~L~~l~~~~~~i~~v-rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
.+.|+ + ..+...... ...+.++.+.+... ...++.+.|. +||++.+
T Consensus 297 ~~~L~-~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~-~gi~v~~ 343 (400)
T 3vax_A 297 LAGLA-S-TSFQVNGDQDHVVPHILNLSFEDV---------DAEAFLVTLK-DLVAVAT 343 (400)
T ss_dssp HHHHT-T-TTCEECSCTTSBCTTEEEEECTTC---------CHHHHHHHHH-HHHHHTT
T ss_pred HHhhC-C-CCEEEeCCcccCCCCEEEEEeCCC---------CHHHHHHHHh-cCcEEEe
Confidence 77776 2 122111110 11245666655211 1356788888 8987754
No 149
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.84 E-value=2.4e-19 Score=182.07 Aligned_cols=274 Identities=12% Similarity=0.074 Sum_probs=181.7
Q ss_pred cCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEc
Q 013235 112 CCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLR 191 (447)
Q Consensus 112 ~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~ 191 (447)
.++|.+|+..+++.+ ....|....+.++...+++++|+++++. +.++|++||++|++.+++.+ ..++++|++..
T Consensus 29 ~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~l~~~la~~~g~--~~~~~~~~gt~a~~~al~~l--~~~gd~vi~~~ 102 (412)
T 2cb1_A 29 AYGFKTLEEGQERFA--TGEGYVYARQKDPTAKALEERLKALEGA--LEAVVLASGQAATFAALLAL--LRPGDEVVAAK 102 (412)
T ss_dssp BCCCSSHHHHHHHHH--HCCSCSBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHTT--CCTTCEEEEET
T ss_pred eeecCChHHHHHHhc--cccCcCcCCCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHH--hCCCCEEEEeC
Confidence 567888876665544 2333333344567889999999999854 47899999999999999865 33567899999
Q ss_pred CCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceee
Q 013235 192 NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIE 271 (447)
Q Consensus 192 ~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~ 271 (447)
+.||+.......... ..|+.....+. | .++|++.+. .++++|++|++++++|.+.
T Consensus 103 ~~~~~~~~~~~~~~~---------~~g~~~~~~~~--------~----~~~l~~~i~----~~~~~v~~~~~~n~~G~~~ 157 (412)
T 2cb1_A 103 GLFGQTIGLFGQVLS---------LMGVTVRYVDP--------E----PEAVREALS----AKTRAVFVETVANPALLVP 157 (412)
T ss_dssp TCCHHHHHHHHHTTT---------TTTCEEEEECS--------S----HHHHHHHCC----TTEEEEEEESSCTTTCCCC
T ss_pred CCchhHHHHHHHHHH---------HcCCEEEEECC--------C----HHHHHHHhc----cCCeEEEEeCCCCCCcccc
Confidence 999764432211100 11333222221 2 467777664 2688999999999999988
Q ss_pred CCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE--eeccccC-CccccccccCH---------
Q 013235 272 LAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-GIPLGAVVTTP--------- 339 (447)
Q Consensus 272 ~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G~pigav~~~~--------- 339 (447)
+ +++|.++|++||+++|+||+|++++... ...+..+|+++ ++|.+++ |.|+|+++..+
T Consensus 158 ~----l~~i~~l~~~~~~~li~D~~~~~~~~~~------~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~ 227 (412)
T 2cb1_A 158 D----LEALATLAEEAGVALVVDNTFGAAGALC------RPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYP 227 (412)
T ss_dssp C----HHHHHHHHHHHTCEEEEECGGGTTTTSC------CGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSG
T ss_pred c----HHHHHHHHHHcCCEEEEECCCccccccC------CccccCCeEEEECCcccccCCCCcEEEEEEecccccccccc
Confidence 6 9999999999999999999998763222 12234579887 7899975 68899887543
Q ss_pred -------------------HHHHhhcCCc-ccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 013235 340 -------------------EIAEVLTRRN-YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYG 399 (447)
Q Consensus 340 -------------------~i~~~l~~~~-~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~ 399 (447)
++.+.+.... ....+..+|..++.++..++.++ ...++..++.++|.+.|.+. +
T Consensus 228 ~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~--~~~~~~~~~~~~l~~~L~~~----~ 301 (412)
T 2cb1_A 228 QFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVA--LRVARMSETARFLAERLQGH----P 301 (412)
T ss_dssp GGGCC-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHTC----T
T ss_pred ccccccccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchHH--HHHHHHHHHHHHHHHHHHcC----C
Confidence 3333332211 11123457888888877776552 34455566777777776553 3
Q ss_pred CeeeE------------------eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCcee
Q 013235 400 IIGDV------------------RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALF 443 (447)
Q Consensus 400 ~i~~v------------------rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv 443 (447)
.+..+ +|.|.++.|++ .+ ...+.+.|.+.||++
T Consensus 302 ~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~~----------~~~~~~~l~~~~i~~ 352 (412)
T 2cb1_A 302 KVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-GD----------LERASRFLGAIRLLK 352 (412)
T ss_dssp TCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-SS----------HHHHHHHHHHCSSEE
T ss_pred CeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-CC----------HHHHHHHHHhCCeee
Confidence 34333 46788999998 32 234555666778876
No 150
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.84 E-value=3.1e-20 Score=188.15 Aligned_cols=254 Identities=14% Similarity=0.050 Sum_probs=169.4
Q ss_pred ccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccc
Q 013235 134 STVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFN 213 (447)
Q Consensus 134 ~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~ 213 (447)
...++.++...+|+++|+++.+. +.+++++||++|++++++++ ..++.|++.+++|||.........
T Consensus 60 ~y~r~~~p~~~~l~~~la~l~g~--~~~~~~~sG~~Ai~~~~~l~---~~gd~Vi~~~~~y~~~~~~~~~~~-------- 126 (400)
T 3nmy_A 60 EYSRTHNPTRFAYERCVAALEGG--TRAFAFASGMAATSTVMELL---DAGSHVVAMDDLYGGTFRLFERVR-------- 126 (400)
T ss_dssp CBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHTTS---CTTCEEEEESSCCHHHHHHHHHTH--------
T ss_pred ccccCCCHHHHHHHHHHHHHhCC--CCEEEecCHHHHHHHHHHHc---CCCCEEEEeCCCchHHHHHHHHhh--------
Confidence 34567788999999999999854 46888999999999865432 356789999999987654432210
Q ss_pred ccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEE
Q 013235 214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293 (447)
Q Consensus 214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~ 293 (447)
....|+.....+. +| .+++++.+. .++++|++|++++++|.+.+ +++|.++|++||+++|+
T Consensus 127 ~~~~g~~~~~v~~-------~d----~~~l~~~i~----~~~~~v~~e~~~np~G~~~~----l~~i~~la~~~g~~liv 187 (400)
T 3nmy_A 127 RRTAGLDFSFVDL-------TD----PAAFKAAIR----ADTKMVWIETPTNPMLKLVD----IAAIAVIARKHGLLTVV 187 (400)
T ss_dssp HHHHCCEEEEECT-------TS----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEE
T ss_pred HhhcCeEEEEECC-------CC----HHHHHHHhc----cCCCEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEE
Confidence 0001222222211 13 567777664 37899999999999999886 99999999999999999
Q ss_pred eccccCccccCCCcccccccCCCCCEEEeeccccC-Cccccc--c-ccCHHHHHhhcCCcccccCCCChHHHHHHHHHHH
Q 013235 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-GIPLGA--V-VTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK 369 (447)
Q Consensus 294 DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~-G~piga--v-~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~ 369 (447)
||+|+.. ... ....+|..+.+.+++|.+++ |.++|. + +.++++++.+.......+...+|+.+++++..|+
T Consensus 188 De~~~~~-~~~----~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~ 262 (400)
T 3nmy_A 188 DNTFASP-MLQ----RPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLK 262 (400)
T ss_dssp ECTTTHH-HHC----CGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHT
T ss_pred ECCCccc-ccC----ChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHh
Confidence 9999621 111 11223443333458999996 467655 3 3477888777654444566778999988888876
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE------------------eecceeEEEEEeeCCCCCCCCHHHHHH
Q 013235 370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV------------------RGRGFLLGVEFVTDRQLKTPAKAETLY 431 (447)
Q Consensus 370 ~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------------rg~Gl~~giel~~~~~~~~p~~~~~~~ 431 (447)
.++. ..++..++.+++.+.|+ +++.+..| +|.|.|++|++..+ .+.+.+
T Consensus 263 ~l~~--r~~~~~~~a~~l~~~L~----~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~-------~~~~~~ 329 (400)
T 3nmy_A 263 TLPL--RMRAHCENALALAQWLE----THPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGG-------FDAAKR 329 (400)
T ss_dssp THHH--HHHHHHHHHHHHHHHHT----TCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTH-------HHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHH----cCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCc-------HHHHHH
Confidence 5532 33444455555544443 45667777 88999999999421 123455
Q ss_pred HHHHHH
Q 013235 432 IMDKMK 437 (447)
Q Consensus 432 ~~~~l~ 437 (447)
+.+.|.
T Consensus 330 ~~~~l~ 335 (400)
T 3nmy_A 330 FCEKTE 335 (400)
T ss_dssp HHHHCS
T ss_pred HHHcCC
Confidence 666554
No 151
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.84 E-value=5.7e-20 Score=181.28 Aligned_cols=279 Identities=16% Similarity=0.061 Sum_probs=186.2
Q ss_pred CCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcc
Q 013235 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYH 195 (447)
Q Consensus 116 ~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yH 195 (447)
.+|+|.+|+.+++.. +. .....+...+++++|+++++.+.+.+++++||++|++.+++.+. .++++|++.+++|+
T Consensus 12 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~--~~gd~vl~~~~~~~ 86 (352)
T 1iug_A 12 LHPKALEALARPQLH--HR-TEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF--APGERVLVPVYGKF 86 (352)
T ss_dssp CCHHHHHHHHSCCCC--TT-SHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC--CTTCEEEEEECSHH
T ss_pred CCHHHHHHhccCCCC--cc-CHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc--CCCCeEEEEeCCch
Confidence 679999999877642 11 11123456889999999987655789999999999999999763 35678999999999
Q ss_pred cCchhhh-hccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCC
Q 013235 196 GNAAGTM-GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAP 274 (447)
Q Consensus 196 G~~~~~~-~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~ 274 (447)
+.....+ ...+. .+..++.+. . +..| .+++++ .++++|+++..++++|.+.+
T Consensus 87 ~~~~~~~~~~~g~----------~~~~v~~~~--~--~~~d----~~~l~~-------~~~~~v~~~~~~nptG~~~~-- 139 (352)
T 1iug_A 87 SERFYEIALEAGL----------VVERLDYPY--G--DTPR----PEDVAK-------EGYAGLLLVHSETSTGALAD-- 139 (352)
T ss_dssp HHHHHHHHHHTTC----------EEEEEECCT--T--CCCC----TTTSCC-------SSCSEEEEESEETTTTEECC--
T ss_pred hHHHHHHHHHcCC----------ceEEEeCCC--C--CCCC----HHHHhc-------cCCcEEEEEEecCCcceecC--
Confidence 8651111 10110 122333211 1 1122 223332 25668888889999999876
Q ss_pred ChHHHHHHHHHHh--CCEEEEeccccCccccCCCcccccccCCCCCEEEe--eccccCCccccccccCHHHHHhhcC---
Q 013235 275 GYLPAVYKSIKKA--GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIPLGAVVTTPEIAEVLTR--- 347 (447)
Q Consensus 275 ~~l~~l~~l~~~~--g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~pigav~~~~~i~~~l~~--- 347 (447)
+++|.++|++| |+++|+||+|+ +|... +..+.+ .+|++++ +|.+.++.++|++++++++++.+..
T Consensus 140 --l~~i~~l~~~~~~~~~li~D~a~~-~~~~~---~~~~~~--~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~ 211 (352)
T 1iug_A 140 --LPALARAFKEKNPEGLVGADMVTS-LLVGE---VALEAM--GVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGY 211 (352)
T ss_dssp --HHHHHHHHHHHCTTCEEEEECTTT-BTTBC---CCSGGG--TCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSS
T ss_pred --HHHHHHHHHhhCCCCEEEEECCcc-ccCcc---eecccc--CeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCc
Confidence 99999999999 99999999996 54321 222323 3688865 5988766668999999987754210
Q ss_pred -----------CcccccCCCChHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEE
Q 013235 348 -----------RNYFNTFGGNPVCTAAGHAVLKVIQKD--KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414 (447)
Q Consensus 348 -----------~~~~~T~~~np~a~aaala~L~~i~~~--~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~gie 414 (447)
.....+++.|+.+++++.++|+.+++. ++.++.+++.+++.+.|+++ .+...... ..+.+++++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~-~~~~~~~~~ 288 (352)
T 1iug_A 212 YLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG--GLRPVPKR-FSPAVAAFY 288 (352)
T ss_dssp TTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT--TCEESCSS-BCTTCEEEE
T ss_pred eeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCcccccc-cCCeEEEEE
Confidence 012234556788888888899887654 56677778888888888775 22211111 257788887
Q ss_pred EeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 415 FVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 415 l~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+.+. ....++.+.|.++||++.+
T Consensus 289 ~~~~--------~~~~~~~~~l~~~gi~v~~ 311 (352)
T 1iug_A 289 LPEG--------VPYARVKEAFAQRGAVIAG 311 (352)
T ss_dssp CCTT--------CCHHHHHHHHHTTTEECEE
T ss_pred cCCC--------CCHHHHHHHHHHCCEEEEe
Confidence 7321 0135688999999999875
No 152
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.84 E-value=1e-19 Score=190.11 Aligned_cols=288 Identities=15% Similarity=0.060 Sum_probs=180.8
Q ss_pred CCCHHHHHHHHHHHHhccccc----cccc--chHHHHHHHHHHHhCCCCC--ceE--EEcCCHHHHHHHHHHHHHhhcC-
Q 013235 115 HCHPYVVDSIVNQIKRIQHST----VLYL--NHAIADFAEALASKMPGNL--KVV--FFTNSGTEANELAIMMARLYTG- 183 (447)
Q Consensus 115 h~~p~v~~A~~~~l~~~~~~~----~~~~--~~~~~elae~L~~~~~~~~--~~v--~~~~sGseA~e~Aik~ar~~t~- 183 (447)
|.++.+.+++.+++......+ ..++ .....+++++|++.++.+. +.+ +|++||++|++.+++.++...+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~ 186 (514)
T 3mad_A 107 HGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARA 186 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhh
Confidence 456888888877776542211 1111 2233456677788886442 456 9999999999999999886542
Q ss_pred -----CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEE
Q 013235 184 -----CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGF 258 (447)
Q Consensus 184 -----~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aav 258 (447)
++.|++..++|++....+... +. .+..++... .+..| .++|++.+. +++++|
T Consensus 187 ~~g~~~d~Vi~~~~~~~~~~~~~~~~-G~----------~v~~v~~~~----~~~~d----~~~Le~~i~----~~~~~v 243 (514)
T 3mad_A 187 TKGITAPEAVVPVSAHAAFDKAAQYF-GI----------KLVRTPLDA----DYRAD----VAAMREAIT----PNTVVV 243 (514)
T ss_dssp HHCCSSCEEEEETTSCTHHHHHHHHH-TC----------EEEEECBCT----TSCBC----HHHHHHHCC----TTEEEE
T ss_pred hcCCCCCeEEEeCccchHHHHHHHHc-CC----------eeEEeeeCC----CCCCC----HHHHHHHhc----cCCEEE
Confidence 278999999988754433322 11 233343321 12234 677777764 268899
Q ss_pred EEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCc-----cccCC--CcccccccCCCCCEEEe--eccccCC
Q 013235 259 LSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGF-----ARTGS--HFWGFEAHGVVPDIVTM--AKGIGNG 329 (447)
Q Consensus 259 i~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGf-----gr~G~--~~~~~~~~gv~pDivt~--sK~lg~G 329 (447)
++++.++++|.+.+ +++|.++|++||++||+||+|++| +++|. ..+.+...|+ |++++ +|.+.+|
T Consensus 244 ~~~~~~nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~--d~~~~s~~K~l~~~ 317 (514)
T 3mad_A 244 AGSAPGYPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGV--TSVSADTHKYGYGA 317 (514)
T ss_dssp EEETTCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTC--CEEEECTTTTTCCC
T ss_pred EEeCCCCCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCC--cEEEECchhccCCC
Confidence 99999999999876 999999999999999999999987 34552 1233444555 66654 5998888
Q ss_pred ccccccccCHHHHHhhcCCc--------------ccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 013235 330 IPLGAVVTTPEIAEVLTRRN--------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALK 395 (447)
Q Consensus 330 ~pigav~~~~~i~~~l~~~~--------------~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~ 395 (447)
+++|+++++++......... .+++++.+.+++.+++..+....-+++.+++.++.+++.+.|+++
T Consensus 318 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~- 396 (514)
T 3mad_A 318 KGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAI- 396 (514)
T ss_dssp SSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred CCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC-
Confidence 99999998877654432100 111111223444444444432222456777888888888888764
Q ss_pred HhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235 396 DKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF 444 (447)
Q Consensus 396 ~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~ 444 (447)
+.+.-+.....++.+.... . ...++.+.|+++||++.
T Consensus 397 ---~g~~~~~~~~~~~~~~~~~------~---~~~~l~~~L~~~Gi~v~ 433 (514)
T 3mad_A 397 ---PSLKILGDPLWVIAVASDE------L---NIYQVMEEMAGRGWRLN 433 (514)
T ss_dssp ---TTCEESSCCSSEEEEECSS------S---CHHHHHHHHHTTTCBCE
T ss_pred ---CCeEEeCCCeEEEEEeCCC------C---CHHHHHHHHHhcCCEec
Confidence 2121111123355554311 0 14578999999999873
No 153
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.84 E-value=1.5e-19 Score=181.49 Aligned_cols=285 Identities=12% Similarity=0.076 Sum_probs=188.8
Q ss_pred CCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCc-eEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013235 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLK-VVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194 (447)
Q Consensus 116 ~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~-~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~y 194 (447)
.+|++.+|+.+++.. +. ..++.....++.++|+++++.+.+ ++++++||++|++.+++.+. .++++|++.+++|
T Consensus 29 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~--~~gd~vl~~~~~~ 103 (396)
T 2ch1_A 29 CSKRVLTAMTNTVLS--NF-HAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL--EEGDRVLIAVNGI 103 (396)
T ss_dssp CCHHHHHHTTSCCCC--TT-CHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--CTTCEEEEEESSH
T ss_pred CCHHHHHHhcccccc--CC-ChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhc--CCCCeEEEEcCCc
Confidence 568888887665432 11 112334578999999999876666 79999999999999998763 3567899999999
Q ss_pred ccCch-hhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCC
Q 013235 195 HGNAA-GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA 273 (447)
Q Consensus 195 HG~~~-~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~ 273 (447)
++... ......+. .+..++.+. .+..| .+++++.+... ++++|++++.++++|.+.+
T Consensus 104 ~~~~~~~~~~~~g~----------~~~~v~~~~----~~~~d----~~~l~~~l~~~---~~~~v~~~~~~nptG~~~~- 161 (396)
T 2ch1_A 104 WAERAVEMSERYGA----------DVRTIEGPP----DRPFS----LETLARAIELH---QPKCLFLTHGDSSSGLLQP- 161 (396)
T ss_dssp HHHHHHHHHHHTTC----------EEEEEECCT----TSCCC----HHHHHHHHHHH---CCSEEEEESEETTTTEECC-
T ss_pred ccHHHHHHHHHcCC----------ceEEecCCC----CCCCC----HHHHHHHHHhC---CCCEEEEECCCCCCceecC-
Confidence 98531 11111110 122333221 12234 56777777532 3567888888888898876
Q ss_pred CChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhhcCCc--
Q 013235 274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRRN-- 349 (447)
Q Consensus 274 ~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l~~~~-- 349 (447)
+++|.++|+++|+++|+||+|. +|... +..+. ..+|+++++ |.++++.++|++++++++++.+....
T Consensus 162 ---~~~i~~l~~~~~~~li~Dea~~-~g~~~---~~~~~--~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~ 232 (396)
T 2ch1_A 162 ---LEGVGQICHQHDCLLIVDAVAS-LCGVP---FYMDK--WEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTK 232 (396)
T ss_dssp ---CTTHHHHHHHTTCEEEEECTTT-BTTBC---CCTTT--TTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSC
T ss_pred ---HHHHHHHHHHcCCEEEEEcccc-ccCCc---cchhh--cCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCc
Confidence 8899999999999999999997 65321 22222 347988766 99987777899999999887764210
Q ss_pred ---------------------ccccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe
Q 013235 350 ---------------------YFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVR 405 (447)
Q Consensus 350 ---------------------~~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr 405 (447)
....++.|..+++++.++|+.+.++ ++.++.+++.+++.+.|+++ .+..+....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~ 310 (396)
T 2ch1_A 233 SKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM--GLDIFVKDP 310 (396)
T ss_dssp CSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH--TCCBSSCSG
T ss_pred ccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC--CCeeccCCc
Confidence 1122345677888888889876443 45677888888888888876 333322111
Q ss_pred --ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cceeecc
Q 013235 406 --GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CALFFSQ 446 (447)
Q Consensus 406 --g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvlv~~~ 446 (447)
..+.++.+.+.+. ....++.+.|+++ ||++.+.
T Consensus 311 ~~~~~~~~~~~~~~~--------~~~~~~~~~L~~~~gi~v~~g 346 (396)
T 2ch1_A 311 RHRLPTVTGIMIPKG--------VDWWKVSQYAMNNFSLEVQGG 346 (396)
T ss_dssp GGBCTTEEEEECCTT--------CCHHHHHHHHHHHHCBCCBCC
T ss_pred cccCCceEEEEcCCC--------CCHHHHHHHHHHhCCEEEecC
Confidence 1244677766211 0145788889876 9998753
No 154
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.83 E-value=5.1e-20 Score=181.97 Aligned_cols=293 Identities=14% Similarity=0.069 Sum_probs=180.0
Q ss_pred CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHH
Q 013235 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA 178 (447)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~a 178 (447)
..+|||.++. .++.+|+|.+|+.+++.. +.......+...+++++|++.++ ....++|++||++|++.+++.+
T Consensus 7 ~~~id~~~~~----~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~l~~~la~~~g-~~~~v~~~~~gt~a~~~al~~~ 79 (356)
T 1v72_A 7 PPALGFSSDN----IAGASPEVAQALVKHSSG--QAGPYGTDELTAQVKRKFCEIFE-RDVEVFLVPTGTAANALCLSAM 79 (356)
T ss_dssp CCCCBCSCGG----GCCCCHHHHHHHHHTTSS--CCCSTTCSHHHHHHHHHHHHHHT-SCCEEEEESCHHHHHHHHHHTS
T ss_pred CceEeeccCC----ccCCCHHHHHHHHhhccC--cccccccchHHHHHHHHHHHHhC-CCCcEEEeCCccHHHHHHHHHh
Confidence 4689998753 367999999999988632 22222246777899999999986 3345899999999999999976
Q ss_pred HhhcCCCeEEEEcCCcccCchhh--hhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHH-HHHcc---CC
Q 013235 179 RLYTGCNDIISLRNAYHGNAAGT--MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD-LIDFG---TS 252 (447)
Q Consensus 179 r~~t~~~~ii~~~~~yHG~~~~~--~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~-~i~~~---~~ 252 (447)
+. .++.|++..+ +|+..... +..... |...+..|.. .+..| .++|++ .+... ..
T Consensus 80 ~~--~gd~vi~~~~-~~~~~~~~~~~~~~~~----------g~~~~~v~~~---~~~~d----~~~l~~~~i~~~~~~~~ 139 (356)
T 1v72_A 80 TP--PWGNIYCHPA-SHINNDECGAPEFFSN----------GAKLMTVDGP---AAKLD----IVRLRERTREKVGDVHT 139 (356)
T ss_dssp CC--TTEEEEECTT-SHHHHSSTTHHHHHTT----------SCEEEECCCG---GGCCC----HHHHHHHTTSSTTCTTS
T ss_pred cC--CCCEEEEcCc-cchhhhhchHHHHHhC----------CcEEEEecCC---CCeEc----HHHHHHHhhhcchhhcc
Confidence 43 4455665554 44443322 222100 2222222221 12234 567777 66531 11
Q ss_pred CCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccc--cCCCcccccccC--CCCCEEE--eeccc
Q 013235 253 GHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR--TGSHFWGFEAHG--VVPDIVT--MAKGI 326 (447)
Q Consensus 253 ~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr--~G~~~~~~~~~g--v~pDivt--~sK~l 326 (447)
.++++|++++.+ ++|.+ ++.+++++|.++|++||+++|+||+|..+.. .|.. ....+ ...|+++ ++|.
T Consensus 140 ~~~~~v~~~~~~-~tG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~---~~~~~~~~~~d~~~~s~sK~- 213 (356)
T 1v72_A 140 TQPACVSITQAT-EVGSI-YTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS---PAEMTWKAGVDALSFGATKN- 213 (356)
T ss_dssp CEEEEEEEESSC-TTSCC-CCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC---TTTTTGGGTCCEEEECCGGG-
T ss_pred CCceEEEEEcCC-CCCcc-CCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC---HHHhhhhhcCCEEEEecccC-
Confidence 268899999865 47865 5789999999999999999999999975421 1211 11121 2457765 5676
Q ss_pred cCCcccc--ccccCHHHHHhhcCC-cccccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013235 327 GNGIPLG--AVVTTPEIAEVLTRR-NYFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGI 400 (447)
Q Consensus 327 g~G~pig--av~~~~~i~~~l~~~-~~~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~ 400 (447)
|.|+| ++++++++++.+... .+.++... .+..++.++++.++++ ++.++.+++.+++++.|+++ +.
T Consensus 214 --g~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----~g 285 (356)
T 1v72_A 214 --GVLAAEAIVLFNTSLATEMSYRRKRAGHLSS--KMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGL----GG 285 (356)
T ss_dssp --TCSSCEEEEESSGGGHHHHHHHHHHTTCCCS--STHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTC----TT
T ss_pred --CCcCccEEEEECHHHHhhHHHHhhccCchhh--hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhC----CC
Confidence 45888 777899888766432 11122111 1223344456666543 24556666677777666543 22
Q ss_pred eee-EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 401 IGD-VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 401 i~~-vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+.- .+..+.++.+.+. .++.+.|.++||++.+
T Consensus 286 ~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~gi~v~~ 318 (356)
T 1v72_A 286 VEVLGGTEANILFCRLD-------------SAMIDALLKAGFGFYH 318 (356)
T ss_dssp EEEESCCCSSEEEEEEC-------------HHHHHHHHHTTCBCBC
T ss_pred cEEccCCCccEEEEEcC-------------HHHHHHHHhcCeEEec
Confidence 221 1344666666651 2588889999999874
No 155
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.83 E-value=1.3e-19 Score=183.12 Aligned_cols=281 Identities=12% Similarity=0.012 Sum_probs=179.1
Q ss_pred CCHHHHHHHHHHHHh-cccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013235 116 CHPYVVDSIVNQIKR-IQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194 (447)
Q Consensus 116 ~~p~v~~A~~~~l~~-~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~y 194 (447)
..+.+.+++..+... ..+....+.++...+++++|+++++.+ .+++++||++|++.+++.+. .+++.|++.+++|
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~--~~gd~vi~~~~~~ 113 (398)
T 2rfv_A 38 VFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGE--AGLATASGISAITTTLLTLC--QQGDHIVSASAIY 113 (398)
T ss_dssp CCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--CTTCEEEEESSSC
T ss_pred ccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh--CCCCEEEEcCCCc
Confidence 345666665522221 123334556888999999999998643 67788899999999998763 3568899999999
Q ss_pred ccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCC
Q 013235 195 HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAP 274 (447)
Q Consensus 195 HG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~ 274 (447)
|+.......... ..|+..+..|. .| .+++++.+. +++++|+++++++++|.+.+
T Consensus 114 ~~~~~~~~~~~~---------~~g~~~~~v~~-------~d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~-- 167 (398)
T 2rfv_A 114 GCTHAFLSHSMP---------KFGINVRFVDA-------AK----PEEIRAAMR----PETKVVYIETPANPTLSLVD-- 167 (398)
T ss_dssp HHHHHHHHTHHH---------HTTCEEEEECT-------TS----HHHHHHHCC----TTEEEEEEESSBTTTTBCCC--
T ss_pred ccHHHHHHHHHH---------HcCCEEEEeCC-------CC----HHHHHHhcC----CCCeEEEEECCCCCCCcccC--
Confidence 876554311100 01222222221 12 566776664 26889999999999999886
Q ss_pred ChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE--EeeccccC-Cccc-cccccCHHHHH-hhcCCc
Q 013235 275 GYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPL-GAVVTTPEIAE-VLTRRN 349 (447)
Q Consensus 275 ~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pi-gav~~~~~i~~-~l~~~~ 349 (447)
+++|.++|++||+++|+||+|..+ ..+ ... .++ +|++ +++|.+++ |.|+ |++++++++++ .+....
T Consensus 168 --l~~i~~l~~~~~~~li~De~~~~~-~~~-~~~---~~~--~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~ 238 (398)
T 2rfv_A 168 --IETVAGIAHQQGALLVVDNTFMSP-YCQ-QPL---QLG--ADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGL 238 (398)
T ss_dssp --HHHHHHHHHHTTCEEEEECTTTCT-TTC-CGG---GGT--CSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHH
T ss_pred --HHHHHHHHHHcCCEEEEECCCccc-ccC-Cch---hhC--CcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHH
Confidence 999999999999999999999743 222 111 233 5664 68899975 7898 99999999886 555333
Q ss_pred ccc-cCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH----------HhcCCee----eEeecceeEEEE
Q 013235 350 YFN-TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALK----------DKYGIIG----DVRGRGFLLGVE 414 (447)
Q Consensus 350 ~~~-T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~----------~~~~~i~----~vrg~Gl~~gie 414 (447)
+.. +.+.||++++++.++|+.+. ...++..+..+.+.+.|++.. .+++.+. ..++.|.|+.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~ 316 (398)
T 2rfv_A 239 KDITGGCMSPFNAWLTLRGVKTLG--IRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFE 316 (398)
T ss_dssp HHTTCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEE
T ss_pred HhCCCCCCCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEE
Confidence 333 56788999999999986542 223344444455555554320 0011110 013678999998
Q ss_pred EeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235 415 FVTDRQLKTPAKAETLYIMDKMKGICALFF 444 (447)
Q Consensus 415 l~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~ 444 (447)
+... .....++.+++...|+.+.
T Consensus 317 ~~~~-------~~~~~~l~~~~~~~~i~~~ 339 (398)
T 2rfv_A 317 IAGG-------LEAGRRMINSVELCLLAVS 339 (398)
T ss_dssp ETTH-------HHHHHHHHTTCSSSEECSC
T ss_pred EcCC-------HHHHHHHHHhCCcceeccC
Confidence 8421 1234556666655566543
No 156
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.83 E-value=1.2e-19 Score=182.77 Aligned_cols=299 Identities=9% Similarity=0.031 Sum_probs=185.7
Q ss_pred CeEEEecCCcccccCCCCCHHHHHHHHHHHH-hccc--cccc-cc-chHHHHHH----HHHHHhCCCCCceEEEcCCHHH
Q 013235 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIK-RIQH--STVL-YL-NHAIADFA----EALASKMPGNLKVVFFTNSGTE 169 (447)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~-~~~~--~~~~-~~-~~~~~ela----e~L~~~~~~~~~~v~~~~sGse 169 (447)
+.++|+.++. ++ +|+|.+|+.+++. ...+ .... +. .+...++. ++|++.++.+ ...++++||++
T Consensus 24 ~~~~~~~~~~---~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~-~~~i~~~sGt~ 96 (405)
T 2vi8_A 24 AKIELIASEN---FV---SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE-HANVQPHSGAQ 96 (405)
T ss_dssp HSEECCTTCC---CC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS-EEECCCSSHHH
T ss_pred cceeeccCcc---cC---CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCC-ceEEEecCcHH
Confidence 3577775442 22 8999999999885 3321 1111 21 23344444 6888888654 33456788899
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCCcccCchhh--hhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235 170 ANELAIMMARLYTGCNDIISLRNAYHGNAAGT--MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247 (447)
Q Consensus 170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~--~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i 247 (447)
|++.+++.+. .+++.|++..++|++..... +...+. ++..++.+... ..+..| .+++++.+
T Consensus 97 a~~~a~~~~~--~~gd~Vl~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~-~~~~~d----~~~l~~~i 159 (405)
T 2vi8_A 97 ANMAVYFTVL--EHGDTVLGMNLSHGGHLTHGSPVNFSGV----------QYNFVAYGVDP-ETHVID----YDDVREKA 159 (405)
T ss_dssp HHHHHHHHHC--CTTCEEEEECGGGTCCTTTTCTTSHHHH----------HSEEEEECBCT-TTCSBC----HHHHHHHH
T ss_pred HHHHHHHHhc--CCCCEEEEecccccchhcccchhhhccc----------eeEEEeccccc-ccCCcC----HHHHHHHH
Confidence 9999999773 35678888888765443211 111110 01122222100 112234 56777777
Q ss_pred HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCC-CCCEE--Eeec
Q 013235 248 DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIV--TMAK 324 (447)
Q Consensus 248 ~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv-~pDiv--t~sK 324 (447)
... ++++|++.|.+ .| ....+++|.++|++||+++|+||+|+ +|+.+... ...++ .+|++ +++|
T Consensus 160 ~~~---~~~~v~~~~~~--~~----~~~~l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~---~~~~~~~~di~~~s~sK 226 (405)
T 2vi8_A 160 RLH---RPKLIVAAAAA--YP----RIIDFAKFREIADEVGAYLMVDMAHI-AGLVAAGL---HPNPVPYAHFVTTTTHK 226 (405)
T ss_dssp HHH---CCSEEEECCSS--CC----SCCCHHHHHHHHHHHTCEEEEECTTT-HHHHHTTS---SCCSTTTCSEEEEESSS
T ss_pred Hhc---CCeEEEEeCCC--CC----ccCCHHHHHHHHHHcCCEEEEEcccc-ccccccCc---CCCccccCCEEEEeccc
Confidence 632 34567775422 12 22238999999999999999999998 66543111 11222 57887 6889
Q ss_pred cccCCccccccccCHHHHHhhcCCcccccCCC-ChHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013235 325 GIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGG-NPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGI 400 (447)
Q Consensus 325 ~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~-np~a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~ 400 (447)
.++++.. |++++++++++.+.......++++ |+..++++.++|+.+++ +++.++++++.+++.+.|+++ .+..
T Consensus 227 ~~~g~~g-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~ 303 (405)
T 2vi8_A 227 TLRGPRG-GMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE--GFTL 303 (405)
T ss_dssp TTCCCSC-EEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--TCEE
T ss_pred cCCCCCC-eEEEEcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC--CCeE
Confidence 9985444 999999999887754322334454 67777777788887654 467788888888888888875 3322
Q ss_pred eeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 401 IGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 401 i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+.. ++.+.++++++.... .....+.+.|.++||++.+
T Consensus 304 ~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~ 340 (405)
T 2vi8_A 304 VSG-GTDNHLLLVDLRPQQ-------LTGKTAEKVLDEVGITVNK 340 (405)
T ss_dssp GGG-SCSSSEEEEECGGGT-------CCHHHHHHHHHHHTEECEE
T ss_pred ecC-CCCceEEEEEccCCC-------CCHHHHHHHHHHcCceecc
Confidence 111 246888888874211 0135678888899999875
No 157
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.83 E-value=1.7e-20 Score=192.66 Aligned_cols=274 Identities=12% Similarity=0.058 Sum_probs=166.4
Q ss_pred EEEecCCcccccCCCCCHHHHHHHHHHHHhcc----ccccccc-chHHHHHHHHHHHhC-CCC-----CceEEE--cCCH
Q 013235 101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ----HSTVLYL-NHAIADFAEALASKM-PGN-----LKVVFF--TNSG 167 (447)
Q Consensus 101 ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~----~~~~~~~-~~~~~elae~L~~~~-~~~-----~~~v~~--~~sG 167 (447)
.|||..|.... .+++|.+.+++.+++.++. .....|. .....++.+.+++++ ... .++|++ ++||
T Consensus 51 ~i~l~~g~~~d--~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~gg 128 (448)
T 3meb_A 51 KVNLGVGAYRD--ESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSG 128 (448)
T ss_dssp CEEESSCCCCC--TTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHH
T ss_pred eEEeecccccC--CCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcH
Confidence 46766665422 2344555555555533321 2223343 345567888888776 333 368999 9999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhh----hccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHH
Q 013235 168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTM----GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDV 243 (447)
Q Consensus 168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~----~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~l 243 (447)
++|++.++.+.....+++.|++.+++|++...... .. +. .+..++..+.. +.++.| ++++
T Consensus 129 t~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~-G~----------~v~~~~~~~~~-~~~~~d----~e~l 192 (448)
T 3meb_A 129 TGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKL-KV----------PYKEYTYLRKD-GELEID----FSNT 192 (448)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTT-TS----------CCEEECCBCTT-SCSSBC----HHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhC-CC----------eEEEEeccccc-cCCCcC----HHHH
Confidence 99999977766556677899999999987654443 21 11 12222221110 023335 5677
Q ss_pred HHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC--Cccccccc-CCCCC--
Q 013235 244 QDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS--HFWGFEAH-GVVPD-- 318 (447)
Q Consensus 244 e~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~--~~~~~~~~-gv~pD-- 318 (447)
++.+.... .+..++++...++++|.+. +.+.+++|.++|++||+++|+||+|.+|++.+. ..+....+ +..++
T Consensus 193 ~~~l~~~~-~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (448)
T 3meb_A 193 KKDIQSAP-EKSIFLFHACAHNPSGIDF-TEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVL 270 (448)
T ss_dssp HHHHHHSC-TTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEE
T ss_pred HHHHHhCC-CCcEEEEeCCCCCCCCcCC-CHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEE
Confidence 77776432 2345555555567777764 678899999999999999999999999986541 12333322 33456
Q ss_pred -EEEeecccc-CCcccccc--cc---------CH----HHHHhhcCCcccccCCCChHHHHHHHHHHHHHh--------h
Q 013235 319 -IVTMAKGIG-NGIPLGAV--VT---------TP----EIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQ--------K 373 (447)
Q Consensus 319 -ivt~sK~lg-~G~pigav--~~---------~~----~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~--------~ 373 (447)
+.++||.+| .|+|+|++ ++ ++ ++++.+.......+.+.+.+++.++.+.|+..+ -
T Consensus 271 ~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~ 350 (448)
T 3meb_A 271 VAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNV 350 (448)
T ss_dssp EEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred EEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHHH
Confidence 336899999 69999997 55 45 555555432233444566777777777764311 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 013235 374 DKLQNNAHVVGSYLKERLTAL 394 (447)
Q Consensus 374 ~~l~~~~~~~g~~l~~~L~~l 394 (447)
+++.++++++.++|.+.|+++
T Consensus 351 ~~~~~~~~~~r~~l~~~L~~~ 371 (448)
T 3meb_A 351 KEMSARIHRMRSLLHASLAKR 371 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 234455556666666666554
No 158
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.83 E-value=3.7e-20 Score=184.69 Aligned_cols=282 Identities=13% Similarity=0.121 Sum_probs=175.5
Q ss_pred ccCCCCCHH---HHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeE
Q 013235 111 VCCGHCHPY---VVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDI 187 (447)
Q Consensus 111 ~~lGh~~p~---v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~i 187 (447)
.++||++|. +.+++.+.+... ..++.+...+++++|+++++. +.+++++||++|++.+++.++ ..++++|
T Consensus 9 ~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~~~~~~-~~~gd~v 81 (374)
T 3uwc_A 9 SYLERQFADIEPYLNDLREFIKTA----DFTLGAELEKFEKRFAALHNA--PHAIGVGTGTDALAMSFKMLN-IGAGDEV 81 (374)
T ss_dssp CCHHHHTSSCHHHHHHHHHHHHHT----CCSSCHHHHHHHHHHHHHTTC--SEEEEESCHHHHHHHHHHHTT-CCTTCEE
T ss_pred eccccCCCCchHHHHHHHHHHHcC----CcccChhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcC-CCCCCEE
Confidence 344555444 455555544433 234577889999999999964 478899999999999998763 2356889
Q ss_pred EEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCC
Q 013235 188 ISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVG 267 (447)
Q Consensus 188 i~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~g 267 (447)
++..++||+........ |...+..|.. ..+..| .+++++.+. .++++|+ |. +++
T Consensus 82 ~~~~~~~~~~~~~~~~~-------------g~~~~~~~~~--~~~~~d----~~~l~~~~~----~~~~~v~--~~-n~~ 135 (374)
T 3uwc_A 82 ITCANTFIASVGAIVQA-------------GATPVLVDSE--NGYVID----PEKIEAAIT----DKTKAIM--PV-HYT 135 (374)
T ss_dssp EEESSSCHHHHHHHHHT-------------TCEEEEECBC--TTSSBC----GGGTGGGCC----TTEEEEC--CB-CGG
T ss_pred EECCCccHHHHHHHHHc-------------CCEEEEEecC--CCCCcC----HHHHHHhCC----CCceEEE--Ee-CCc
Confidence 99999999866543322 2222222211 112223 344555443 2566666 44 456
Q ss_pred ceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee----ccccC-CccccccccC-HHH
Q 013235 268 GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGN-GIPLGAVVTT-PEI 341 (447)
Q Consensus 268 G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s----K~lg~-G~pigav~~~-~~i 341 (447)
|.+.+ +++|.++|++||+++|+||+|+.+. .+..+..+..+|++++| |.+++ |. .|+++++ +++
T Consensus 136 G~~~~----~~~i~~~~~~~~~~li~D~~~~~g~-----~~~~~~~~~~~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~ 205 (374)
T 3uwc_A 136 GNIAD----MPALAKIAKKHNLHIVEDACQTILG-----RINDKFVGSWGQFACFSLHPLKNLNVWSD-AGVIITHSDEY 205 (374)
T ss_dssp GCCCC----HHHHHHHHHHTTCEEEEECTTCTTC-----EETTEETTSSSSEEEEECSSSSSSCCSSC-CEEEEESCHHH
T ss_pred CCcCC----HHHHHHHHHHcCCEEEEeCCCccCc-----eeCCeeccccccEEEEeCCCCCcCCccce-eEEEEeCCHHH
Confidence 76654 9999999999999999999997432 23335566668999988 99987 75 7777765 456
Q ss_pred HHhhcCCc------------ccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe-ecc
Q 013235 342 AEVLTRRN------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR-GRG 408 (447)
Q Consensus 342 ~~~l~~~~------------~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr-g~G 408 (447)
.+.+.... ...++..+++.+++++..++.+ +++.++.+++.+++++.|.++...+....... +..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 283 (374)
T 3uwc_A 206 AEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQL--ETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYH 283 (374)
T ss_dssp HHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEEC
T ss_pred HHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCce
Confidence 55443210 1233445777777776666544 34677788888888888776531011111100 112
Q ss_pred eeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235 409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ 446 (447)
Q Consensus 409 l~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~ 446 (447)
.++.+.+... ...++.+.|.++||.+++.
T Consensus 284 ~~~~~~~~~~---------~~~~l~~~L~~~gi~v~~~ 312 (374)
T 3uwc_A 284 VFHIYVLRVK---------YRDQLFQYLKDNGIEVKIH 312 (374)
T ss_dssp CCSSEEEEET---------THHHHHHHHHHTTBCCBCS
T ss_pred eeEEEEEEcC---------CHHHHHHHHHHCCCccccC
Confidence 2222222111 1457889999999998764
No 159
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.83 E-value=4.7e-19 Score=178.64 Aligned_cols=276 Identities=13% Similarity=-0.008 Sum_probs=179.5
Q ss_pred cCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEc
Q 013235 112 CCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLR 191 (447)
Q Consensus 112 ~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~ 191 (447)
.+.+.+++...++.+. ....+...++.++...+|+++|+++++.+ .+++++||++|++.+++.+ ..++++|++.+
T Consensus 31 ~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~~~--~~~gd~vl~~~ 105 (389)
T 3acz_A 31 TFCFDSTQQGADLFMG-KGEGHIYSRLGNPTVEQFEEMVCSIEGAA--GSAAFGSGMGAISSSTLAF--LQKGDHLIAGD 105 (389)
T ss_dssp BBCCSSHHHHHHHHTT-CSSCCCBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHTTT--CCTTCEEEEES
T ss_pred ceecCChHHHHHhhcC-CCCCcccCCCCChHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHH--hCCCCEEEEeC
Confidence 4456666544443322 12234445677889999999999998653 6778899999999999855 23568899999
Q ss_pred CCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceee
Q 013235 192 NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIE 271 (447)
Q Consensus 192 ~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~ 271 (447)
++||+.......... ..|+.....|. .| .+++++.+. +++++|++|++++++|.+.
T Consensus 106 ~~y~~~~~~~~~~~~---------~~g~~~~~v~~-------~d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~ 161 (389)
T 3acz_A 106 TLYGCTVSLFTHWLP---------RFGIEVDLIDT-------SD----VEKVKAAWK----PNTKMVYLESPANPTCKVS 161 (389)
T ss_dssp SCCHHHHHHHHHHHH---------HTTCEEEEECT-------TC----HHHHHHTCC----TTEEEEEEESSCTTTCCCC
T ss_pred CCchHHHHHHHHHHH---------HcCCEEEEECC-------CC----HHHHHHhcC----CCCeEEEEECCCCCCCeec
Confidence 999975443211000 01222222221 13 566666653 2678999999999999988
Q ss_pred CCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE--EeeccccC-Cccc-cccccCH-HHHHhhc
Q 013235 272 LAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPL-GAVVTTP-EIAEVLT 346 (447)
Q Consensus 272 ~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pi-gav~~~~-~i~~~l~ 346 (447)
+ +++|.++|+++|+++|+||+|+++. .+ . ..+..+|++ +++|.+++ |.|+ |++++++ ++++.+.
T Consensus 162 ~----l~~i~~~~~~~~~~livD~~~~~~~-~~-~-----~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~ 230 (389)
T 3acz_A 162 D----IKGIAVVCHERGARLVVDATFTSPC-FL-K-----PLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIK 230 (389)
T ss_dssp C----HHHHHHHHHHHTCEEEEECTTTCTT-TC-C-----GGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHH
T ss_pred C----HHHHHHHHHHcCCEEEEECCCcccc-cc-C-----ccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHH
Confidence 6 9999999999999999999998552 12 1 123457988 58899986 6888 9999998 8888775
Q ss_pred CCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeee------------------Eeecc
Q 013235 347 RRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRG 408 (447)
Q Consensus 347 ~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~------------------vrg~G 408 (447)
..........+|+.++++++.|+.+. ...++..+..+.+.+.|++. +.+.. .+|.|
T Consensus 231 ~~~~~~g~~~~~~~~~~~~~~l~~l~--~r~~~~~~~~~~l~~~l~~~----~~v~~~~~~~L~~~~~~~~~~~~~~g~g 304 (389)
T 3acz_A 231 FYRKDAGSLMAPMDAFLCARGMKTLP--IRMQIHMENGLKVAKFLEQH----EKIVKVNHPGLESFPGHDIAKKQMTGYG 304 (389)
T ss_dssp HHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHHC----TTEEEEECTTSTTSTTHHHHHHHCSSCC
T ss_pred HHHHhcCCCCCHHHHHHHHcCccHHH--HHHHHHHHHHHHHHHHHHcC----CCeeEEECCCCCCCccHHHHHhhCCCCC
Confidence 43221233457888888888886542 12233334444444444443 11111 25678
Q ss_pred eeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235 409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF 444 (447)
Q Consensus 409 l~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~ 444 (447)
.|+.+++.. ...+.+.|.+.|+++.
T Consensus 305 ~~~~~~l~~-----------~~~~~~~l~~~~i~~~ 329 (389)
T 3acz_A 305 STFLFEMKS-----------FEAAKKLMEHLKVCTL 329 (389)
T ss_dssp SEEEEEESS-----------HHHHHHHHTTCSSSEE
T ss_pred eEEEEEECC-----------HHHHHHHHHhCCCcEE
Confidence 899999831 1234455666787764
No 160
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.83 E-value=3.6e-19 Score=178.69 Aligned_cols=277 Identities=13% Similarity=0.093 Sum_probs=184.6
Q ss_pred CHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCccc
Q 013235 117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHG 196 (447)
Q Consensus 117 ~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG 196 (447)
+|++.+++.++++...+ ++.+...+++++|+++++. +.+++++||++|++.+++.++ ..++++|++..++|++
T Consensus 19 ~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~al~~~~~~~~-~~~gd~Vl~~~~~~~~ 91 (393)
T 1mdo_A 19 GAEELAAVKTVLDSGWI----TTGPKNQELEAAFCRLTGN--QYAVAVSSATAGMHIALMALG-IGEGDEVITPSMTWVS 91 (393)
T ss_dssp CHHHHHHHHHHHHHTCC----SSSHHHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCHH
T ss_pred CHHHHHHHHHHHhcCCc----CCChHHHHHHHHHHHHhCC--CcEEEecChHHHHHHHHHHcC-CCCCCEEEeCCCccHh
Confidence 48899999998877522 2467788999999999854 578999999999999999763 2356789999999988
Q ss_pred CchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCCh
Q 013235 197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGY 276 (447)
Q Consensus 197 ~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~ 276 (447)
...... .. |...+..|... ..+..| .+++++.+.. ++++|++++ ..|.+.+
T Consensus 92 ~~~~~~-~~------------g~~~~~v~~~~-~~~~~d----~~~l~~~l~~----~~~~v~~~~---~~G~~~~---- 142 (393)
T 1mdo_A 92 TLNMIV-LL------------GANPVMVDVDR-DTLMVT----PEHIEAAITP----QTKAIIPVH---YAGAPAD---- 142 (393)
T ss_dssp HHHHHH-HT------------TCEEEEECBCT-TTCCBC----HHHHHHHCCT----TEEEECCBC---GGGCCCC----
T ss_pred HHHHHH-HC------------CCEEEEEeccC-CcCCCC----HHHHHHhcCC----CceEEEEeC---CCCCcCC----
Confidence 654332 21 22222222111 112234 5677776642 577888776 3455543
Q ss_pred HHHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCCEEEee----ccccCCccccccccC-HHHHHhhcCC-c
Q 013235 277 LPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTT-PEIAEVLTRR-N 349 (447)
Q Consensus 277 l~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pigav~~~-~~i~~~l~~~-~ 349 (447)
+++|.++|+++|+++|+||+|+ |+...| .. ++. +|++++| |.+++| +.|+++++ +++++.+... .
T Consensus 143 ~~~i~~l~~~~~~~li~D~a~~~g~~~~~-~~-----~~~-~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~ 214 (393)
T 1mdo_A 143 LDAIYALGERYGIPVIEDAAHATGTSYKG-RH-----IGA-RGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKF 214 (393)
T ss_dssp HHHHHHHHHHHTCCBCEECTTCTTCEETT-EE-----TTS-SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTB
T ss_pred HHHHHHHHHHcCCeEEEECccccCCeECC-ee-----cCC-CCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHh
Confidence 9999999999999999999998 343444 22 233 8999877 999876 68889886 7887765431 1
Q ss_pred cc-------------------cc----CCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCe--e--
Q 013235 350 YF-------------------NT----FGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGII--G-- 402 (447)
Q Consensus 350 ~~-------------------~T----~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i--~-- 402 (447)
+. .+ +..+++.++++++.++.++ ++.++.+++.+++++.|.++. +... .
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~--~~~~~~~~~ 290 (393)
T 1mdo_A 215 HGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLD--ALNARRAAIAAQYHQAMADLP--FQPLSLPSW 290 (393)
T ss_dssp TTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHTSS--CEECCCCSS
T ss_pred cCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCC--cccccCCCC
Confidence 10 01 2347888888888777553 456666777777877776641 1111 1
Q ss_pred eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235 403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ 446 (447)
Q Consensus 403 ~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~ 446 (447)
+.++.+.++.+.+.++.. .....++.+.|.++||+++..
T Consensus 291 ~~~~~~~~~~v~~~~~~~-----~~~~~~l~~~l~~~gi~v~~~ 329 (393)
T 1mdo_A 291 EHIHAWHLFIIRVDEARC-----GITRDALMASLKTKGIGTGLH 329 (393)
T ss_dssp CEECCCSCEEEECCHHHH-----SSCHHHHHHHHHHTTBCCBCC
T ss_pred CCCceeEEEEEEeccccc-----ccCHHHHHHHHHhCCCCcccc
Confidence 244566788888742000 001457889999999998753
No 161
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.83 E-value=8.9e-20 Score=185.57 Aligned_cols=265 Identities=16% Similarity=0.080 Sum_probs=172.7
Q ss_pred cccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccc
Q 013235 133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF 212 (447)
Q Consensus 133 ~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~ 212 (447)
+...+|.++...+|+++|+++.+ .+.+++++||++|++.+++.+. ..++.||+.+++||+.........
T Consensus 73 ~~y~r~~~p~~~~l~~~la~~~g--~~~~~~~~sG~~Ai~~al~~l~--~~Gd~Vi~~~~~y~~~~~~~~~~~------- 141 (414)
T 3ndn_A 73 YVYSRYGNPTVSVFEERLRLIEG--APAAFATASGMAAVFTSLGALL--GAGDRLVAARSLFGSCFVVCSEIL------- 141 (414)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHTTC--CTTCEEEEESCCCHHHHHHHHTHH-------
T ss_pred cCcCCCCChHHHHHHHHHHHHHC--CCcEEEECCHHHHHHHHHHHHh--CCCCEEEEcCCccchHHHHHHHHH-------
Confidence 44456788999999999999985 4678999999999999998652 356889999999998543321100
Q ss_pred cccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235 213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (447)
Q Consensus 213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI 292 (447)
...|+..+..|. +| .++|++.+.. ++++|++|++++++|.+.+ +++|.++|+++|+++|
T Consensus 142 --~~~g~~~~~v~~-------~d----~~~l~~ai~~----~t~~v~le~p~NptG~~~~----l~~i~~la~~~g~~li 200 (414)
T 3ndn_A 142 --PRWGVQTVFVDG-------DD----LSQWERALSV----PTQAVFFETPSNPMQSLVD----IAAVTELAHAAGAKVV 200 (414)
T ss_dssp --HHTTCEEEEECT-------TC----HHHHHHHTSS----CCSEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEE
T ss_pred --HHcCcEEEEeCC-------CC----HHHHHHhcCC----CCeEEEEECCCCCCCcccc----HHHHHHHHHHcCCEEE
Confidence 011333222221 13 5677777642 5779999999999998876 9999999999999999
Q ss_pred EeccccCccccCCCcccccccCCCCCEEEeeccccC-C-ccccccccCHHHHH-hhcCCcccccCCCChHHHHHHHHHHH
Q 013235 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-G-IPLGAVVTTPEIAE-VLTRRNYFNTFGGNPVCTAAGHAVLK 369 (447)
Q Consensus 293 ~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~-G-~pigav~~~~~i~~-~l~~~~~~~T~~~np~a~aaala~L~ 369 (447)
+||+|+ +| .++....+|....+.+++|.+++ | +++|+++++++.+. .+...........+|+.+++++..++
T Consensus 201 vDe~~~----~~-~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~ 275 (414)
T 3ndn_A 201 LDNVFA----TP-LLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLE 275 (414)
T ss_dssp EECTTT----HH-HHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGG
T ss_pred EECCCc----cc-ccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999996 22 12222244553334457899987 7 89999999988765 44321111112236787777777665
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE------------------eecceeEEEEEeeCCCCCCCCHHHHHH
Q 013235 370 VIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV------------------RGRGFLLGVEFVTDRQLKTPAKAETLY 431 (447)
Q Consensus 370 ~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------------rg~Gl~~giel~~~~~~~~p~~~~~~~ 431 (447)
.+.. ..++..+..+++.+.|++ ++.+..| +|.|.|++|++..... ...+.+.+
T Consensus 276 ~l~~--r~~~~~~~a~~l~~~L~~----~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~---~~~~~~~~ 346 (414)
T 3ndn_A 276 TLAI--RVQHSNASAQRIAEFLNG----HPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED---VAKQRAFE 346 (414)
T ss_dssp GHHH--HHHHHHHHHHHHHHHHHT----CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG---GHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHhc----CCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc---ccHHHHHH
Confidence 5432 334444555555555543 3434333 6789999999942100 00234667
Q ss_pred HHHHHHhCCcee
Q 013235 432 IMDKMKGICALF 443 (447)
Q Consensus 432 ~~~~l~~~Gvlv 443 (447)
+.+.|...++.+
T Consensus 347 ~~~~l~~~~~~~ 358 (414)
T 3ndn_A 347 VLDKMRLIDISN 358 (414)
T ss_dssp HHHHCSSSEECS
T ss_pred HHHhCccceEcC
Confidence 888777655443
No 162
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.82 E-value=4.1e-19 Score=177.14 Aligned_cols=293 Identities=13% Similarity=0.047 Sum_probs=188.4
Q ss_pred eEEEecCCcccccCCCCCHHHHHHHHHHHHhcc-ccccccc-----chHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHH
Q 013235 100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTVLYL-----NHAIADFAEALASKMPGNLKVVFFTNSGTEANEL 173 (447)
Q Consensus 100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~-~~~~~~~-----~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~ 173 (447)
.|||+.++ |+.+|.|.+|+.+++.... .....|. .+...+++++|+++++.+.+++++++||++|++.
T Consensus 2 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~ 75 (382)
T 4eb5_A 2 AYFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNL 75 (382)
T ss_dssp CBCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHH
T ss_pred eeeccCCC------CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHH
Confidence 37787654 4689999999999987631 1111122 3567889999999987656789999999999999
Q ss_pred HHHHHHhh--cCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235 174 AIMMARLY--TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT 251 (447)
Q Consensus 174 Aik~ar~~--t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~ 251 (447)
+++.+... .+++.|++.+++|++.......+.. .|...+..|... .+..| .++|++.+.
T Consensus 76 ~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~--~~~~d----~~~l~~~i~--- 136 (382)
T 4eb5_A 76 AIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQK----------QGFEVEYIPVGK--YGEVD----VSFIDQKLR--- 136 (382)
T ss_dssp HHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTT----------TTCEEEEECBCT--TSCBC----HHHHHHHCC---
T ss_pred HHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHh----------CCcEEEEeccCC--CCccC----HHHHHHHhc---
Confidence 99987621 3567899999999876544432211 122222222111 12224 567777664
Q ss_pred CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEe--eccccCC
Q 013235 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNG 329 (447)
Q Consensus 252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G 329 (447)
.++.+|+++..++++|.+.+ +++|.++|++||++ |+||+|+ +|... +..+.+ .+|++++ +|.+|.
T Consensus 137 -~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~~---~~~~~~--~~di~~~s~sK~~g~- 203 (382)
T 4eb5_A 137 -DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQIE---VDVEKI--GADMLTISSNDIYGP- 203 (382)
T ss_dssp -TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTBC---CCHHHH--TCSEEEEETGGGTCC-
T ss_pred -CCCeEEEEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCcc---cCcccc--CCCEEEeehHHhcCC-
Confidence 25788999999999999876 89999999999999 9999996 54321 122222 4688865 597542
Q ss_pred ccccccccCHHHHHhhcCC-------cccccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013235 330 IPLGAVVTTPEIAEVLTRR-------NYFNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGI 400 (447)
Q Consensus 330 ~pigav~~~~~i~~~l~~~-------~~~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~ 400 (447)
..+|+++++++. .+... .....+..|+.+++++.++|+.+++ +++.++.+++.+++.+.|+++ +.
T Consensus 204 ~g~G~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~ 277 (382)
T 4eb5_A 204 KGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI----EE 277 (382)
T ss_dssp SSCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TT
T ss_pred CceEEEEEcccc--ccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC----CC
Confidence 137888887763 12211 1122344567777777788887654 245566666666766666543 22
Q ss_pred eeeEee----cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 401 IGDVRG----RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 401 i~~vrg----~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+.-+.. .+.++.+.+... ...++.+.|.++||++.+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~ 317 (382)
T 4eb5_A 278 SYLNGHPEKRLPNNVNVRFSYI---------EGESIVLSLDMAGIQAST 317 (382)
T ss_dssp EEECSCSSSBCTTEEEEEETTS---------CHHHHHHHHHHHTCBCBC
T ss_pred eEEeCCcccCCCCEEEEEeCCc---------CHHHHHHHHHHCCEEEec
Confidence 221111 256777776310 135688888899999865
No 163
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.82 E-value=1e-19 Score=181.70 Aligned_cols=283 Identities=14% Similarity=0.081 Sum_probs=175.8
Q ss_pred ccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEE
Q 013235 111 VCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISL 190 (447)
Q Consensus 111 ~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~ 190 (447)
.+++|++|.+.+.+.+++.+.......+..+...+++++|+++++. +.++|++||++|++.+++.+. ..++++|++.
T Consensus 6 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~i~~~sgt~al~~~l~~l~-~~~gd~Vi~~ 82 (373)
T 3frk_A 6 ASFKPMHDEIEYEIKFKFEEIYKRNWFILGDEDKKFEQEFADYCNV--NYCIGCGNGLDALHLILKGYD-IGFGDEVIVP 82 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTCCSSSHHHHHHHHHHHHHHTS--SEEEEESCHHHHHHHHHHHTT-CCTTCEEEEE
T ss_pred cCCCcccCCCCHHHHHHHHHHHHCCCccCCchHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHcC-CCCcCEEEEC
Confidence 3566666665555555444322112234577889999999999854 578999999999999998763 2356789999
Q ss_pred cCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCcee
Q 013235 191 RNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGII 270 (447)
Q Consensus 191 ~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~ 270 (447)
..+|++........ +. .+..++.. . ..+..| .+++++.+. +++++|+ | +++.|..
T Consensus 83 ~~~~~~~~~~~~~~-g~----------~~~~~~~~--~-~~~~~d----~~~l~~~l~----~~~~~v~--~-~n~~G~~ 137 (373)
T 3frk_A 83 SNTFIATALAVSYT-GA----------KPIFVEPD--I-RTYNID----PSLIESAIT----EKTKAII--A-VHLYGQP 137 (373)
T ss_dssp TTSCTHHHHHHHHH-SC----------EEEEECEE--T-TTTEEC----GGGTGGGCC----TTEEEEE--E-ECCTTCC
T ss_pred CCCcHHHHHHHHHc-CC----------EEEEEecc--c-cccCcC----HHHHHHhcC----CCCeEEE--E-ECCCcCc
Confidence 99998855443222 11 11122111 0 011123 344555443 2667777 3 3456665
Q ss_pred eCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee----ccccC-CccccccccC-HHHHHh
Q 013235 271 ELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGN-GIPLGAVVTT-PEIAEV 344 (447)
Q Consensus 271 ~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s----K~lg~-G~pigav~~~-~~i~~~ 344 (447)
.+ +++|.++|+++|+++|+||+|+. | ..+..+..+..+|++++| |.+++ |. .|+++++ +++.+.
T Consensus 138 ~~----l~~i~~l~~~~~~~li~D~a~~~----g-~~~~~~~~~~~~d~~~~S~~~~K~l~~~g~-gg~~~~~~~~~~~~ 207 (373)
T 3frk_A 138 AD----MDEIKRIAKKYNLKLIEDAAQAH----G-SLYKGMKVGSLGDAAGFSFYPAKNLGSLGD-GGAVVTNDKDLAEK 207 (373)
T ss_dssp CC----HHHHHHHHHHHTCEEEEECTTCT----T-CEETTEETTSSSSEEEEECCTTSSSCCSSS-CEEEEESCHHHHHH
T ss_pred cc----HHHHHHHHHHcCCEEEEECCccc----C-CEECCEeccccccEEEEeCcCCCccCccce-eEEEEeCCHHHHHH
Confidence 54 99999999999999999999972 2 122334556668999988 99987 64 6777765 456554
Q ss_pred hcCC------------cccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe-ecc--e
Q 013235 345 LTRR------------NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR-GRG--F 409 (447)
Q Consensus 345 l~~~------------~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr-g~G--l 409 (447)
+... ..+.++..+++.+++++..++.+ +++.++.+++.+++++.|.++. ........ +.. .
T Consensus 208 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~ 283 (373)
T 3frk_A 208 IKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYL--DKWNEERRKIAQKYIAGINNPN--VIIPVEADYAKHVWY 283 (373)
T ss_dssp HHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHCCCTT--EECCCCCTTEECCCS
T ss_pred HHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCc--eEeccCCCCCceeeE
Confidence 4321 11235566888888887777654 3466777778888777776542 11111000 111 2
Q ss_pred eEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235 410 LLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ 446 (447)
Q Consensus 410 ~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~ 446 (447)
.+.+.. . ...++.+.|.++||.++..
T Consensus 284 ~~~~~~--~---------~~~~l~~~L~~~gI~v~~~ 309 (373)
T 3frk_A 284 TFVIRS--E---------KRDELQKYLNNNGIGTLIH 309 (373)
T ss_dssp SEEEEE--S---------SHHHHHHHHHHTTBCCBCS
T ss_pred EEEEEe--C---------CHHHHHHHHHHCCCCcccC
Confidence 222322 1 1467889999999998854
No 164
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.82 E-value=1e-18 Score=176.87 Aligned_cols=296 Identities=13% Similarity=0.080 Sum_probs=168.6
Q ss_pred eEEEecCCcccccCCCCCHHHHHHHHHHHH-hcccc--ccc-cc----chHHHHHH-HHHHHhCCCCCceE-EEcCCHHH
Q 013235 100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIK-RIQHS--TVL-YL----NHAIADFA-EALASKMPGNLKVV-FFTNSGTE 169 (447)
Q Consensus 100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~-~~~~~--~~~-~~----~~~~~ela-e~L~~~~~~~~~~v-~~~~sGse 169 (447)
+.+++.++.. +.||+|.+|+.+++. .+.+. ... +. .+...+++ +++++.++. +.+ ++++||++
T Consensus 33 ~~i~l~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~v~~~~Gs~ 105 (425)
T 3ecd_A 33 SQVELIASEN-----IVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNA--GHANVQPHSGAQ 105 (425)
T ss_dssp HSEECCTTCC-----CCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTC--SEEECCCSSHHH
T ss_pred cceeeecccC-----CCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCC--CCceeecCchHH
Confidence 3566665443 348999999999884 32111 111 11 12445555 667777643 334 46999999
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCCcccC-chhhhh-ccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235 170 ANELAIMMARLYTGCNDIISLRNAYHGN-AAGTMG-ATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247 (447)
Q Consensus 170 A~e~Aik~ar~~t~~~~ii~~~~~yHG~-~~~~~~-~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i 247 (447)
|++.+++.+ ..+++.|++.+++||+. ..+... ..+ .++..++.+... ..+..| .++|++.+
T Consensus 106 a~~~al~~~--~~~gd~Vi~~~~~~~~~~~~~~~~~~~g----------~~~~~~~~~~~~-~~~~~d----~~~l~~~i 168 (425)
T 3ecd_A 106 ANGAVMLAL--AKPGDTVLGMSLDAGGHLTHGAKPALSG----------KWFNALQYGVSR-DTMLID----YDQVEALA 168 (425)
T ss_dssp HHHHHHHHH--CCTTCEEEEECC----------------------------CEEEEECCCT-TTSSCC----HHHHHHHH
T ss_pred HHHHHHHHc--cCCCCEEEEcccccccceecchhhhhcc----------cceeeeecCCCc-ccCccC----HHHHHHHH
Confidence 999999876 34678999999999872 222211 111 112222222110 113334 57787777
Q ss_pred HccCCCCeEEEEEc-cccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccc-cCccccCCCcccccccCCCCCEEE--ee
Q 013235 248 DFGTSGHVAGFLSE-SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ-AGFARTGSHFWGFEAHGVVPDIVT--MA 323 (447)
Q Consensus 248 ~~~~~~~~aavi~E-pi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tGfgr~G~~~~~~~~~gv~pDivt--~s 323 (447)
... ++++|+++ |++| ....+++|+++|++||+++|+||+| +|+.+.| ..+.. .. .+|+++ ++
T Consensus 169 ~~~---~~~~v~~~~~~~~-------~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~-~~~~~--~~-~~di~~~s~s 234 (425)
T 3ecd_A 169 QQH---KPSLIIAGFSAYP-------RKLDFARFRAIADSVGAKLMVDMAHIAGVIAAG-RHANP--VE-HAHVVTSTTH 234 (425)
T ss_dssp HHH---CCSEEEEECSCCC-------SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTT-SSCCG--GG-TCSEEEEESS
T ss_pred hhc---CCcEEEEccccCC-------CcCCHHHHHHHHHHcCCEEEEECcChHhhhhcc-cccCc--hh-cCcEEEecCC
Confidence 532 35677777 5553 3445899999999999999999995 5655555 23221 11 168875 55
Q ss_pred ccccCCccccccccC-HHHHHhhcCCcccccC-CCChHHHHHHHHHH-HHHhh--hhHHHHHHHHHHHHHHHHHHHHHhc
Q 013235 324 KGIGNGIPLGAVVTT-PEIAEVLTRRNYFNTF-GGNPVCTAAGHAVL-KVIQK--DKLQNNAHVVGSYLKERLTALKDKY 398 (447)
Q Consensus 324 K~lg~G~pigav~~~-~~i~~~l~~~~~~~T~-~~np~a~aaala~L-~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~ 398 (447)
|++ +|.+.|+++++ +++.+.+.......+. +.++..++++.+++ +.+++ +++.++++++.+++++.|.+. .+
T Consensus 235 K~l-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~ 311 (425)
T 3ecd_A 235 KTL-RGPRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG--GV 311 (425)
T ss_dssp GGG-CCCSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred ccc-CCCCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC--CC
Confidence 999 45678999988 5677666542222222 23333333333334 33333 267788888888888888773 22
Q ss_pred CCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235 399 GIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF 444 (447)
Q Consensus 399 ~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~ 444 (447)
..+. -.+.+.++++.+..... ....+.+.|.++||++.
T Consensus 312 ~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~gi~v~ 349 (425)
T 3ecd_A 312 DLVT-GGTDNHLLLVDLRPKGL-------KGAQVEQALERAGITCN 349 (425)
T ss_dssp EEGG-GSCSSSEEEEECGGGTC-------CHHHHHHHHHHTTEECE
T ss_pred eecc-CCCCceEEEEEeCCCCC-------CHHHHHHHHHHcCCEec
Confidence 1111 01457788887743210 13567778888999987
No 165
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.82 E-value=4.9e-19 Score=178.88 Aligned_cols=261 Identities=14% Similarity=0.017 Sum_probs=167.5
Q ss_pred cccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccc
Q 013235 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV 214 (447)
Q Consensus 135 ~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~ 214 (447)
..++.++...+++++|+++++. +.+++++||++|++.+++.+. .+++.|++.+++||+.......+..
T Consensus 59 ~~r~~~~~~~~l~~~la~~~g~--~~~i~~~sG~~a~~~~l~~~~--~~gd~vl~~~~~~~~~~~~~~~~~~-------- 126 (398)
T 1gc0_A 59 YSRISNPTLNLLEARMASLEGG--EAGLALASGMGAITSTLWTLL--RPGDEVLLGNTLYGCTFAFLHHGIG-------- 126 (398)
T ss_dssp ----CCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEEESSCCSHHHHHHHHTGG--------
T ss_pred ccCCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--cCCCEEEEeCCCchhHHHHHHHHHH--------
Confidence 3456788899999999999865 367788999999999999763 3567899999999986554322111
Q ss_pred cCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEe
Q 013235 215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD 294 (447)
Q Consensus 215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~D 294 (447)
..|+.....+. .| .+++++.+. +++++|++|++++++|.+.+ +++|.++|++||+++|+|
T Consensus 127 -~~g~~~~~~~~-------~d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D 186 (398)
T 1gc0_A 127 -EFGVKLRHVDM-------AD----LQALEAAMT----PATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVD 186 (398)
T ss_dssp -GGTCEEEEECT-------TC----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEE
T ss_pred -HcCCEEEEECC-------CC----HHHHHHhcC----CCCeEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEE
Confidence 01222222221 13 566776664 27889999999999998875 999999999999999999
Q ss_pred ccccCccccCCCcccccccCCCCCEEEeeccccC-Cccc-cccccCHHHHH-hhcCCccc-ccCCCChHHHHHHHHHHHH
Q 013235 295 EVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGN-GIPL-GAVVTTPEIAE-VLTRRNYF-NTFGGNPVCTAAGHAVLKV 370 (447)
Q Consensus 295 Ev~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg~-G~pi-gav~~~~~i~~-~l~~~~~~-~T~~~np~a~aaala~L~~ 370 (447)
|+|+.+ ..+ .. ..++....+.+++|.+++ |.|+ |++++++++++ .+....+. .+...||+++++++++|+.
T Consensus 187 ~~~~~~-~~~-~~---~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 261 (398)
T 1gc0_A 187 NTYCTP-YLQ-RP---LELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT 261 (398)
T ss_dssp CTTTHH-HHC-CG---GGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT
T ss_pred CCCccc-ccC-Cc---hhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccch
Confidence 999744 223 11 123443334468899995 6887 88999988765 45433333 3456789999998888875
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHH----------Hh---cCCee-eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHH
Q 013235 371 IQKDKLQNNAHVVGSYLKERLTALK----------DK---YGIIG-DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKM 436 (447)
Q Consensus 371 i~~~~l~~~~~~~g~~l~~~L~~l~----------~~---~~~i~-~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l 436 (447)
+. ...++..+..+.+.+.|++.. .. +.+.. ..++.|.|+.+++..+ ...+.+.+
T Consensus 262 ~~--~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~l 329 (398)
T 1gc0_A 262 LN--LRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG----------IGAGRRFM 329 (398)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTH----------HHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC----------HHHHHHHH
Confidence 42 234444555555555554421 00 01111 1246789999988321 12344455
Q ss_pred HhCCceee
Q 013235 437 KGICALFF 444 (447)
Q Consensus 437 ~~~Gvlv~ 444 (447)
.+.|+.+.
T Consensus 330 ~~~~i~~~ 337 (398)
T 1gc0_A 330 NALQLFSR 337 (398)
T ss_dssp HHCSSSEE
T ss_pred HhCCCcee
Confidence 66676653
No 166
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.82 E-value=1e-19 Score=187.61 Aligned_cols=311 Identities=12% Similarity=0.048 Sum_probs=202.7
Q ss_pred CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccccc-c----c--ccchHHHHHHHHHHHhCCCCCceEEEcCCHHH
Q 013235 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHST-V----L--YLNHAIADFAEALASKMPGNLKVVFFTNSGTE 169 (447)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~-~----~--~~~~~~~elae~L~~~~~~~~~~v~~~~sGse 169 (447)
++..|+|.. ++|+.++.+.+++.++++...... . . ...+...+++++|+++++.+.++|+|++|+++
T Consensus 66 ~~~iyld~~------~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~ 139 (465)
T 3e9k_A 66 ENAIYFLGN------SLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTV 139 (465)
T ss_dssp CBCEECBTT------TSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHH
T ss_pred CCeEEecCC------ccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHH
Confidence 456677742 568778889888888876542111 0 0 11234467888899988776788999999999
Q ss_pred HHHHHHHHHHhh-cCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235 170 ANELAIMMARLY-TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID 248 (447)
Q Consensus 170 A~e~Aik~ar~~-t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~ 248 (447)
+++.+++..... ..+++|++..++||+......+.......... ...+...+.+. .+..| .+++++.++
T Consensus 140 al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~--~~~v~~~~~~~----~~~~d----~~~l~~~i~ 209 (465)
T 3e9k_A 140 NLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIE--ESMRMIKPREG----EETLR----IEDILEVIE 209 (465)
T ss_dssp HHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHH--HHEEEECCCTT----CSSCC----HHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcce--eeeEEEecCCC----CCccC----HHHHHHHHH
Confidence 999999866322 24567999999999866533322110000000 00011122111 12124 577887776
Q ss_pred ccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE--eeccc
Q 013235 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGI 326 (447)
Q Consensus 249 ~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~l 326 (447)
+.. +++++|+++.+++.+|.+.+ +++|.++|++||+++|+|++|+ +|.. ....+.+ ..|+++ +.|.+
T Consensus 210 ~~~-~~~~lv~~~~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~-~g~~---~~~~~~~--~~D~~~~s~~K~l 278 (465)
T 3e9k_A 210 KEG-DSIAVILFSGVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHA-VGNV---ELYLHDW--GVDFACWCSYKYL 278 (465)
T ss_dssp HHG-GGEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS---CCCHHHH--TCCEEEECSSSTT
T ss_pred hcC-CCeEEEEEeCcccCcceeec----HHHHHHHHHHcCCEEEEEhhhh-cCCc---CCchhhc--CCCEEEECccccc
Confidence 432 37899999999999999987 8999999999999999999996 3322 1122223 357776 45999
Q ss_pred cCC-ccccccccCHHHHHhhcCCccc---c----------------------cCCCChHHHHHHHHHHHHHhh---hhHH
Q 013235 327 GNG-IPLGAVVTTPEIAEVLTRRNYF---N----------------------TFGGNPVCTAAGHAVLKVIQK---DKLQ 377 (447)
Q Consensus 327 g~G-~pigav~~~~~i~~~l~~~~~~---~----------------------T~~~np~a~aaala~L~~i~~---~~l~ 377 (447)
.+| .++|++++++++.+.+.....+ + ....|++++++..++|+.+++ +++.
T Consensus 279 ~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~ 358 (465)
T 3e9k_A 279 NAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALR 358 (465)
T ss_dssp CCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred ccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHH
Confidence 544 4689999999887665432110 0 014567888888889988765 4577
Q ss_pred HHHHHHHHHHHHHHHHHHH---------hcCCee--eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235 378 NNAHVVGSYLKERLTALKD---------KYGIIG--DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF 444 (447)
Q Consensus 378 ~~~~~~g~~l~~~L~~l~~---------~~~~i~--~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~ 444 (447)
++.+++.+++.+.|+++.. .+.++. +.+++|.++.+.+..+ ..++.+.|.++||++.
T Consensus 359 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~----------~~~l~~~L~~~Gi~v~ 426 (465)
T 3e9k_A 359 KKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVP----------NKDVFQELEKRGVVCD 426 (465)
T ss_dssp HHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECCT----------TCCHHHHHHTTTEECE
T ss_pred HHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecCC----------HHHHHHHHHHCCEEEe
Confidence 8888888888888877521 111111 2234588888887421 2358889999999875
No 167
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.82 E-value=6.5e-19 Score=175.16 Aligned_cols=293 Identities=13% Similarity=0.043 Sum_probs=187.7
Q ss_pred eEEEecCCcccccCCCCCHHHHHHHHHHHHhccc-cc-----ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHH
Q 013235 100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-ST-----VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANEL 173 (447)
Q Consensus 100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~-~~-----~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~ 173 (447)
.|||+.++ +..+|.|.+|+.+++..... .. ..+..+...+++++|++.++.+.+++++++||++|++.
T Consensus 2 iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~ 75 (382)
T 4hvk_A 2 AYFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNL 75 (382)
T ss_dssp CBCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHH
T ss_pred EeecCCCc------CCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHH
Confidence 37776543 35789999999999876421 11 11234566789999999998766789999999999999
Q ss_pred HHHHHHhh--cCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235 174 AIMMARLY--TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT 251 (447)
Q Consensus 174 Aik~ar~~--t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~ 251 (447)
+++..... .+++.|++.++.|++.......+.. .|+..+..|... .+..| .++|++.+.
T Consensus 76 ~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~--~~~~d----~~~l~~~i~--- 136 (382)
T 4hvk_A 76 AIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQK----------QGFEVEYIPVGK--YGEVD----VSFIDQKLR--- 136 (382)
T ss_dssp HHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHH----------TTCEEEEECBCT--TSCBC----HHHHHHHCC---
T ss_pred HHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHh----------cCCEEEEeccCC--CCCcC----HHHHHHHhc---
Confidence 99866421 3567899988888876554332210 122222222111 11124 567777664
Q ss_pred CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCC
Q 013235 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNG 329 (447)
Q Consensus 252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G 329 (447)
+++++|++++.++++|.+.+ +++|.++|++||+ +|+||+|+ +|.. .+..+.++ +|+++++ |.+| +
T Consensus 137 -~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~~---~~~~~~~~--~d~~~~s~~K~~g-~ 203 (382)
T 4hvk_A 137 -DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAA-LHIDATAS-VGQI---EVDVEKIG--ADMLTISSNDIYG-P 203 (382)
T ss_dssp -TTEEEEECCSBCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTT-BTTB---CCCHHHHT--CSEEEEESGGGTS-C
T ss_pred -cCceEEEEECCCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHh-cCCC---CCCchhcC--CCEEEEeHHHhcC-C
Confidence 26789999999999998876 9999999999999 99999986 3321 12223333 5787654 9543 3
Q ss_pred ccccccccCHHHHHhhcCCcc-------cccCCCChHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013235 330 IPLGAVVTTPEIAEVLTRRNY-------FNTFGGNPVCTAAGHAVLKVIQK--DKLQNNAHVVGSYLKERLTALKDKYGI 400 (447)
Q Consensus 330 ~pigav~~~~~i~~~l~~~~~-------~~T~~~np~a~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~ 400 (447)
..+|+++++++. .+....+ ..+...|+.++++..++|+.+++ +++.++.+++.+++.+.|+++ +.
T Consensus 204 ~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~ 277 (382)
T 4hvk_A 204 KGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI----EE 277 (382)
T ss_dssp TTCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TT
T ss_pred CceEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC----CC
Confidence 347888877654 2222111 12344577888888888886654 345666667777777666543 22
Q ss_pred eeeEe----ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 401 IGDVR----GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 401 i~~vr----g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+.-.. +.+.++.+.+... ...++.+.|.++||++.+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~v~~ 317 (382)
T 4hvk_A 278 SYLNGHPEKRLPNNVNVRFSYI---------EGESIVLSLDMAGIQAST 317 (382)
T ss_dssp EEECSCSSSBCTTEEEEEETTC---------CHHHHHHHHHHTTCBCBC
T ss_pred eEEeCCccccCCCEEEEEECCC---------CHHHHHHHHHHCCEEEee
Confidence 22111 1134566665211 135688899999999874
No 168
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.82 E-value=4.3e-20 Score=183.14 Aligned_cols=301 Identities=14% Similarity=0.079 Sum_probs=180.5
Q ss_pred CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc--ccccccc-chHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHH
Q 013235 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ--HSTVLYL-NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAI 175 (447)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~--~~~~~~~-~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Ai 175 (447)
|+|+|.+++..-..+| +||.+.+++.++++... .....|. ++...+|+++|+++++. +..++++||++|++.++
T Consensus 3 ~~~~~~~~~~~~l~~~-~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~--~~~i~~~~G~~a~~~al 79 (357)
T 3lws_A 3 NRLRTSFQQTTGQISG-HGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGM--DDAVFFPSGTMAQQVAL 79 (357)
T ss_dssp CHHHHHHHTCSEESSB-SSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHH
T ss_pred chhhhHHHhhcccccC-CCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhCC--CcEEEecCcHHHHHHHH
Confidence 4566644444434556 57888888888887632 1122343 57788999999999854 44567799999999999
Q ss_pred HHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCe
Q 013235 176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV 255 (447)
Q Consensus 176 k~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~ 255 (447)
+.+... +.+++|+..+.+|.......... ...|+..++.|.. .+..| .+++++. + ++
T Consensus 80 ~~~~~~-gd~~~vi~~~~~~~~~~~~~~~~---------~~~g~~~~~v~~~---~~~~d----~~~l~~~-----~-~~ 136 (357)
T 3lws_A 80 RIWSDE-TDNRTVAYHPLCHLEIHEQDGLK---------ELHPIETILVGAA---DRLMT----LDEIKAL-----P-DI 136 (357)
T ss_dssp HHHHHH-HTCCEEEECTTCHHHHSSTTHHH---------HHSSCEEEECSCT---TSCCC----HHHHHTC-----C-SC
T ss_pred HHHhhc-CCCcEEEecccceeeeeccchhh---------hccCcEEEEecCC---CCCcC----HHHHhcC-----c-Cc
Confidence 876543 22225666666664332210000 0013333333321 11234 4555543 2 26
Q ss_pred EEEEEccccCCC-ceeeCCCChHHHHHHHHHHhCCEEEEecccc-----CccccCCCcccccccCCCCCEE--Eeecccc
Q 013235 256 AGFLSESIQGVG-GIIELAPGYLPAVYKSIKKAGGLCIADEVQA-----GFARTGSHFWGFEAHGVVPDIV--TMAKGIG 327 (447)
Q Consensus 256 aavi~Epi~~~g-G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-----Gfgr~G~~~~~~~~~gv~pDiv--t~sK~lg 327 (447)
+++++++.++++ |. .++.+.+++|.++|++||++||+||+|. .++++. ..+ ....|++ +++|+++
T Consensus 137 ~~v~~~~p~np~~G~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~-~~~-----~~~~d~~~~s~sK~~~ 209 (357)
T 3lws_A 137 ACLLLELPQREIGGV-APAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTA-AEI-----AGLFDSIYISFYKGLG 209 (357)
T ss_dssp SEEEEESSBGGGTSB-CCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCH-HHH-----HTTSSEEEEESSSTTC
T ss_pred ceEEEEcccccCCce-eCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCCh-HHH-----HhcCCEEEEeccccCC
Confidence 778888777665 65 4578899999999999999999999875 122222 111 1123555 7999995
Q ss_pred CCccccccccCHHHHHhhcCCc--cc-ccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeee-
Q 013235 328 NGIPLGAVVTTPEIAEVLTRRN--YF-NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD- 403 (447)
Q Consensus 328 ~G~pigav~~~~~i~~~l~~~~--~~-~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~- 403 (447)
+... |++++++++++.+.... +. +++..++. ++++.++|+... + ..++..+..+++.+.|+++ +.+.-
T Consensus 210 ~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~-~-~~~~~~~~~~~l~~~L~~~----~g~~~~ 281 (357)
T 3lws_A 210 GIAG-AILAGPAAFCQTARIWKRRYGGDLISLYPY-IVSADYYYELRK-D-RMGQYYEQAKQLAEQFNAL----PGVHTT 281 (357)
T ss_dssp CSSC-EEEEECHHHHHHHHHHHHHTTCCCSCCHHH-HHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHTS----TTEEEE
T ss_pred CCce-EEEEcCHHHHHHHHHHHHHhcCCcccchHH-HHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHhC----CCCeec
Confidence 4222 88889999988775321 11 22333344 445556776522 2 2334456666777766553 32322
Q ss_pred -EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235 404 -VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ 446 (447)
Q Consensus 404 -vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~ 446 (447)
.+..+.++++++... ......++.+.|.++||++.+.
T Consensus 282 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~Gi~v~~g 319 (357)
T 3lws_A 282 PEVPVSNMFHLHFDGQ------AADISPKLEQVQEETGLGFVGY 319 (357)
T ss_dssp SSSCSSSEEEEEEESC------HHHHHHHHHHHHHHHCEESCSC
T ss_pred cCCCcceEEEEEecCC------hHHHHHHHHHHHHhcCeEEecc
Confidence 245678888887431 1122467888999999998764
No 169
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.82 E-value=1.5e-19 Score=181.76 Aligned_cols=278 Identities=17% Similarity=0.138 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccC
Q 013235 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN 197 (447)
Q Consensus 118 p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~ 197 (447)
+++.+++.+.+...... ...+...+++++|+++++. +.+++++||++|++.+++.++ ..++++|++..++|++.
T Consensus 36 ~~~~~a~~~~~~~~~~~---~~~~~~~~l~~~la~~~~~--~~~i~~~~gt~al~~~l~~~~-~~~gd~vl~~~~~~~~~ 109 (391)
T 3dr4_A 36 GNERDYVLECMDTTWIS---SVGRFIVEFEKAFADYCGV--KHAIACNNGTTALHLALVAMG-IGPGDEVIVPSLTYIAS 109 (391)
T ss_dssp SSHHHHHHHHHHHTCCS---SCSHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHT-CCTTCEEEEESSSCTHH
T ss_pred HHHHHHHHHHHHcCCcc---CCChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCchHHH
Confidence 66777777777653221 2467889999999999854 478899999999999999773 23567899999999987
Q ss_pred chhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChH
Q 013235 198 AAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYL 277 (447)
Q Consensus 198 ~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l 277 (447)
...+...+. .+..++.. . ..+..| .+++++.+. .++++|+++ +++|.+.+ +
T Consensus 110 ~~~~~~~g~-----------~~~~~~~~--~-~~~~~d----~~~l~~~~~----~~~~~v~~~---n~tG~~~~----~ 160 (391)
T 3dr4_A 110 ANSVTYCGA-----------TPVLVDND--P-RTFNLD----AAKLEALIT----PRTKAIMPV---HLYGQICD----M 160 (391)
T ss_dssp HHHHHHTTC-----------EEEEECBC--T-TTCSBC----GGGSGGGCC----TTEEEECCB---CGGGCCCC----H
T ss_pred HHHHHHCCC-----------EEEEEecC--c-cccCcC----HHHHHHhcC----CCceEEEEE---CCCCChhh----H
Confidence 655433211 12222211 0 112223 344554443 266777743 35666554 9
Q ss_pred HHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee----ccccCCccccccccC-HHHHHhhcCC-cc-
Q 013235 278 PAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTT-PEIAEVLTRR-NY- 350 (447)
Q Consensus 278 ~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pigav~~~-~~i~~~l~~~-~~- 350 (447)
++|.++|+++|+++|+||+|+. |. .+.-...+..+|++++| |++++| +.|+++++ +++.+.+... .+
T Consensus 161 ~~i~~l~~~~~~~li~D~a~~~-g~----~~~~~~~~~~~di~~~S~s~~K~l~~g-~gg~~~~~~~~~~~~~~~~~~~g 234 (391)
T 3dr4_A 161 DPILEVARRHNLLVIEDAAEAV-GA----TYRGKKSGSLGDCATFSFFGNAIITTG-EGGMITTNDDDLAAKMRLLRGQG 234 (391)
T ss_dssp HHHHHHHHHTTCEEEEECTTCT-TC----EETTEETTSSSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHcCCEEEEECcccc-cc----eECCeeecccCCEEEEECCCCCcCCcC-CeEEEEECCHHHHHHHHHHHhcC
Confidence 9999999999999999999972 21 11112344557899888 999875 46777765 5565554321 11
Q ss_pred ------------cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeee-----EeecceeEEE
Q 013235 351 ------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD-----VRGRGFLLGV 413 (447)
Q Consensus 351 ------------~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-----vrg~Gl~~gi 413 (447)
...+..+++.+++++..++.+ +++.++.+++.+++++.|.++ ....... .+..+.++.+
T Consensus 235 ~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~i 310 (391)
T 3dr4_A 235 MDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERV--DEHLAARERVVGWYEQKLARL--GNRVTKPHVALTGRHVFWMYTV 310 (391)
T ss_dssp CCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHGGG--TTSEECCCCCTTSCCCCSSEEE
T ss_pred CCCCCcccccccccccCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC--CccccCcCCCCCCcceeEEEEE
Confidence 123567788888877777655 346778888888888888876 3322221 2334455677
Q ss_pred EEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235 414 EFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ 446 (447)
Q Consensus 414 el~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~ 446 (447)
.+.+... ....++.+.|.++||.++..
T Consensus 311 ~~~~~~~------~~~~~l~~~L~~~GI~v~~~ 337 (391)
T 3dr4_A 311 RLGEGLS------TTRDQVIKDLDALGIESRPV 337 (391)
T ss_dssp EECSSCS------SCHHHHHHHHHHTTCCCEEC
T ss_pred EECCccc------hhHHHHHHHHHHCCCceeec
Confidence 7643100 11467899999999998754
No 170
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.81 E-value=5.9e-20 Score=185.78 Aligned_cols=289 Identities=12% Similarity=0.054 Sum_probs=162.2
Q ss_pred CCCHHHHHHHHHHHHh-c--cccccc-c----cchHHHHHH-HHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCC
Q 013235 115 HCHPYVVDSIVNQIKR-I--QHSTVL-Y----LNHAIADFA-EALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCN 185 (447)
Q Consensus 115 h~~p~v~~A~~~~l~~-~--~~~~~~-~----~~~~~~ela-e~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~ 185 (447)
|.||+|.+|+.+++.. . .+.... + ..+...+++ +++++.++.+.+. ++++||++|++.+++... .+++
T Consensus 41 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-v~~~sGs~a~~~a~~~~~--~~gd 117 (420)
T 3gbx_A 41 YTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYAN-VQPHSGSQANFAVYTALL--QPGD 117 (420)
T ss_dssp CCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEE-CCCSSHHHHHHHHHHHHC--CTTC
T ss_pred CCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCce-eEecCcHHHHHHHHHHhc--CCCC
Confidence 4689999999998844 2 111111 1 122334434 6777777654443 356889999999998653 3567
Q ss_pred eEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEE-cccc
Q 013235 186 DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS-ESIQ 264 (447)
Q Consensus 186 ~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~-Epi~ 264 (447)
.|++..++|++.......... ...++..++.+.. ..+..| .++|++.+... ++++|++ +|++
T Consensus 118 ~v~~~~~~~~~~~~~~~~~~~--------~g~~~~~~~~~~~--~~~~~d----~~~l~~~i~~~---~~~~v~~~~~~~ 180 (420)
T 3gbx_A 118 TVLGMNLAQGGHLTHGSPVNF--------SGKLYNIVPYGID--ESGKID----YDEMAKLAKEH---KPKMIIGGFSAY 180 (420)
T ss_dssp EEEEEEEC------------C--------HHHHSEEEEEEEC--TTCSCC----HHHHHHHHHHH---CCSEEEECCTTC
T ss_pred EEEecchhhcceeccchhhhh--------cccceeEEeccCC--ccCCcC----HHHHHHHHHhc---CCeEEEEecCcc
Confidence 788777776552211110000 0001122222111 122245 56777777642 3567777 5555
Q ss_pred CCCceeeCCCChHHHHHHHHHHhCCEEEEeccc-cCccccCCCcccccccCCCCCEEE--eeccccCCccccccccCH--
Q 013235 265 GVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ-AGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPLGAVVTTP-- 339 (447)
Q Consensus 265 ~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pigav~~~~-- 339 (447)
+ ...+ +++|+++|++||++||+||+| .|+.+.| .+... .. .+|+++ ++|+++ |.+.|++++++
T Consensus 181 ~---~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~-~~~~~--~~-~~di~~~s~sK~~~-g~~gg~~~~~~~~ 248 (420)
T 3gbx_A 181 S---GVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAG-VYPNP--VP-HAHVVTTTTHKTLA-GPRGGLILAKGGD 248 (420)
T ss_dssp C---SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTT-SSCCS--TT-TSSEEEEESSGGGC-SCSCEEEEESSCC
T ss_pred C---CccC----HHHHHHHHHHcCCEEEEECCcchhceecc-cCCcc--cc-cCCEEEeecccCCC-CCCceEEEEcCCc
Confidence 3 2332 999999999999999999997 4555555 22221 11 389997 569997 44458888887
Q ss_pred -HHHHhhcCCcccccCCCChHHHH-HHHHHHHHHh-h--hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEE
Q 013235 340 -EIAEVLTRRNYFNTFGGNPVCTA-AGHAVLKVIQ-K--DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414 (447)
Q Consensus 340 -~i~~~l~~~~~~~T~~~np~a~a-aala~L~~i~-~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~gie 414 (447)
++++.+....+.+++++++.... ++..++..+. + +++.++++++.+++++.|.+. .+..+. -...+.++++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~-~~~~~~~~~~~ 325 (420)
T 3gbx_A 249 EELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR--GYKVVS-GGTENHLFLLD 325 (420)
T ss_dssp HHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT--TCEEGG-GSCSSSEEEEE
T ss_pred HHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc--CCeecc-CCCCCeEEEEE
Confidence 77777654333344444433333 3233444332 2 346777888888888888763 221111 01356777777
Q ss_pred EeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 415 FVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 415 l~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+..... ....+.+.|.++||++.+
T Consensus 326 ~~~~~~-------~~~~~~~~l~~~gi~v~~ 349 (420)
T 3gbx_A 326 LVDKNL-------TGKEADAALGRANITVNK 349 (420)
T ss_dssp CGGGTC-------CHHHHHHHHHHTTEECEE
T ss_pred cCCCCC-------CHHHHHHHHHHCCcEecc
Confidence 643210 134577788889999875
No 171
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.81 E-value=2.1e-19 Score=182.90 Aligned_cols=293 Identities=17% Similarity=0.143 Sum_probs=177.5
Q ss_pred CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc-ccccccc-----chHHHHHHHHHHHhCCCCCceEEEcCCHHHH
Q 013235 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ-HSTVLYL-----NHAIADFAEALASKMPGNLKVVFFTNSGTEA 170 (447)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~-~~~~~~~-----~~~~~elae~L~~~~~~~~~~v~~~~sGseA 170 (447)
++..|||+.++. +.+|.|.+|+.+++.... +....|. .+...+++++|+++++.+.++|+|++||++|
T Consensus 17 ~~~~~Ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 90 (432)
T 3a9z_A 17 NRKVYMDYNATT------PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTES 90 (432)
T ss_dssp -CCEECBTTTCC------CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHH
T ss_pred CCcEEeeCCccC------CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHH
Confidence 577899876542 689999999999987632 1112221 2345789999999987666789999999999
Q ss_pred HHHHHHHHHh-h-----cCCCeEEEEcCCcccCchhhhhc-cCCCC---ccccccCCCeEeecCCCCcCCCCCCChHHHH
Q 013235 171 NELAIMMARL-Y-----TGCNDIISLRNAYHGNAAGTMGA-TAQSN---WKFNVVQTGVHHALNPDPYRGVFGADGEMYA 240 (447)
Q Consensus 171 ~e~Aik~ar~-~-----t~~~~ii~~~~~yHG~~~~~~~~-t~~~~---~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~ 240 (447)
++.+++.+.. + .++++|++..++||+......+. ...+. +..-....|...+..|.... .+..| .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d----~ 165 (432)
T 3a9z_A 91 NNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKV-NGQVE----V 165 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTT-TSSCC----H
T ss_pred HHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcc-cCCcC----H
Confidence 9999998741 1 25588999999999863111100 00000 00000012333322222110 11123 5
Q ss_pred HHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC----------CEEEEeccccCccccCCCcccc
Q 013235 241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG----------GLCIADEVQAGFARTGSHFWGF 310 (447)
Q Consensus 241 ~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g----------~llI~DEv~tGfgr~G~~~~~~ 310 (447)
++|++.+. .++++|+++++++++|.+.+ +++|.++|+++| +++|+||+| ++|... ...
T Consensus 166 ~~l~~~i~----~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~-~~~~~~---~~~ 233 (432)
T 3a9z_A 166 EDILAAVR----PTTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQ-ALGKRR---VDV 233 (432)
T ss_dssp HHHHHTCC----TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTT-TTTTSC---CCH
T ss_pred HHHHHhcc----CCceEEEEECcccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchh-hhCCcc---cCh
Confidence 66666553 26789999999999999887 899999999999 999999999 455432 112
Q ss_pred cccCCCCCEEEe--eccccCCccccccccCHHH-HHhhcCC-------cccccCCCChHHHHHHHHHHHHHhh--hhHHH
Q 013235 311 EAHGVVPDIVTM--AKGIGNGIPLGAVVTTPEI-AEVLTRR-------NYFNTFGGNPVCTAAGHAVLKVIQK--DKLQN 378 (447)
Q Consensus 311 ~~~gv~pDivt~--sK~lg~G~pigav~~~~~i-~~~l~~~-------~~~~T~~~np~a~aaala~L~~i~~--~~l~~ 378 (447)
. ...+|++++ +|.+ |.++|++++++++ ...+... ....++..|+.+++++.++|+.+++ +++.+
T Consensus 234 ~--~~~~d~~~~s~~K~~--g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~ 309 (432)
T 3a9z_A 234 E--DLGVDFLTIVGHKFY--GPRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEA 309 (432)
T ss_dssp H--HHCCSEEEEEGGGTT--CCSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--hcCCCEEEEehhHhc--CCcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHH
Confidence 2 234788865 8976 4569999998775 2223221 1223456788888888889987765 46778
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCe--e---eEeecceeEEEEEee
Q 013235 379 NAHVVGSYLKERLTALKDKYGII--G---DVRGRGFLLGVEFVT 417 (447)
Q Consensus 379 ~~~~~g~~l~~~L~~l~~~~~~i--~---~vrg~Gl~~giel~~ 417 (447)
+++++.++|.+.|+++.. ..+. . ..+..+.++.+.+.+
T Consensus 310 ~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (432)
T 3a9z_A 310 HMRDIRDYLEERLEAEFG-KRIHLNSRFPGVERLPNTCNFSIQG 352 (432)
T ss_dssp HHHHHHHHHHHHHHHHHG-GGEEESSCCTTCCBCTTEEEEEECS
T ss_pred HHHHHHHHHHHHHHhccC-CcEEEeCCCCcccCCCCEEEEEeCC
Confidence 888888899888887531 1111 1 112346677777753
No 172
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.81 E-value=2.5e-18 Score=174.97 Aligned_cols=283 Identities=14% Similarity=0.070 Sum_probs=180.9
Q ss_pred EecCCcccccCCCCCHHHHHHHHHHHHhccccccccc--chHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHh
Q 013235 103 DAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL 180 (447)
Q Consensus 103 D~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~--~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~ 180 (447)
||..|.. .++ .+|++.+++.+.++... |. .+...+++++|+++++ .+++++++||++|++.+++.+.
T Consensus 20 ~l~~~~p--~~~-~p~~~~~a~~~~~~~~~-----y~~~~~~~~~l~~~la~~~~--~~~v~~~~ggt~al~~~l~~l~- 88 (424)
T 2po3_A 20 PLLVGRP--NRI-DRARLYERLDRALDSQW-----LSNGGPLVREFEERVAGLAG--VRHAVATCNATAGLQLLAHAAG- 88 (424)
T ss_dssp CEETTCC--CCC-CHHHHHHHHHHHHHHTC-----CSSSCHHHHHHHHHHHHHHT--SSEEEEESCHHHHHHHHHHHHT-
T ss_pred cccccCC--CCC-ChHHHHHHHHHHHhcCC-----cccCCHHHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHcC-
Confidence 4554444 445 46799999988887532 34 3778899999999985 3689999999999999999764
Q ss_pred hcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEE
Q 013235 181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS 260 (447)
Q Consensus 181 ~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~ 260 (447)
.+++|++.+++|++........ |...+..|... ..+..| .++|++.+. + ++++|++
T Consensus 89 --~gd~Vlv~~~~~~~~~~~~~~~-------------G~~~~~v~~~~-~~~~~d----~~~l~~~i~---~-~~~~v~~ 144 (424)
T 2po3_A 89 --LTGEVIMPSMTFAATPHALRWI-------------GLTPVFADIDP-DTGNLD----PDQVAAAVT---P-RTSAVVG 144 (424)
T ss_dssp --CCSEEEEESSSCTHHHHHHHHT-------------TCEEEEECBCT-TTSSBC----HHHHGGGCC---T-TEEEEEE
T ss_pred --CCCEEEECCCccHHHHHHHHHc-------------CCEEEEEecCC-CcCCcC----HHHHHHhhC---c-CCcEEEE
Confidence 3488999999999876543221 22222222111 112223 456665553 2 5667776
Q ss_pred ccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCCEEEee----ccccCCcccccc
Q 013235 261 ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAV 335 (447)
Q Consensus 261 Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pigav 335 (447)
.+ .+|... .+++|.++|+++|+++|+||+|+ |+.+.| .. .+..+|++++| |++++ .++|++
T Consensus 145 ~~---~tG~~~----~l~~i~~la~~~~~~li~Dea~~~g~~~~~-~~-----~~~~~di~~~S~sk~K~l~~-~~~G~~ 210 (424)
T 2po3_A 145 VH---LWGRPC----AADQLRKVADEHGLRLYFDAAHALGCAVDG-RP-----AGSLGDAEVFSFHATKAVNA-FEGGAV 210 (424)
T ss_dssp EC---GGGCCC----CHHHHHHHHHHTTCEEEEECTTCTTCEETT-EE-----TTSSSSEEEEECCTTSSSCC-SSCEEE
T ss_pred EC---CCCCcC----CHHHHHHHHHHcCCEEEEECccccCCeECC-ee-----cccccCEEEEeCCCCCCccC-CCCeEE
Confidence 43 456543 49999999999999999999998 776655 21 22336888766 88877 689999
Q ss_pred ccC-HHHHHhhcCCc-c-----------cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 013235 336 VTT-PEIAEVLTRRN-Y-----------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG 402 (447)
Q Consensus 336 ~~~-~~i~~~l~~~~-~-----------~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~ 402 (447)
+++ +++++.+.... + ..++..+++++++++..++.++ ++.++.+++.+++++.|.++ +.+.
T Consensus 211 v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~--~~~~~~~~~~~~l~~~L~~~----~g~~ 284 (424)
T 2po3_A 211 VTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFP--EVIDRNRRNHAAYREHLADL----PGVL 284 (424)
T ss_dssp EESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTCSC----TTEE
T ss_pred EeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC----CCcc
Confidence 998 88877654311 1 0122345788887777666543 35666666666666665543 2222
Q ss_pred eEe---e-c--ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 403 DVR---G-R--GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 403 ~vr---g-~--Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
-+. | . ..++.+.+.+.... ....++.+.|.++||++..
T Consensus 285 ~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~l~~~L~~~gI~v~~ 328 (424)
T 2po3_A 285 VADHDRHGLNNHQYVIVEIDEATTG-----IHRDLVMEVLKAEGVHTRA 328 (424)
T ss_dssp ECCGGGGSCCCCCCEEEEECHHHHS-----SCHHHHHHHHHHTTEECBC
T ss_pred ccCCCCCCccccEEEEEEECCccch-----hhHHHHHHHHHHCCCceec
Confidence 111 2 1 14566666320000 0135688889999999875
No 173
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.81 E-value=7.4e-19 Score=180.40 Aligned_cols=298 Identities=14% Similarity=0.095 Sum_probs=175.7
Q ss_pred EEEecCCcccccCCCCCHHHHHHHHHHHH-hcccc--ccccc--c---hHHHHHH-HHHHHhCCCCCceEEE-cCCHHHH
Q 013235 101 YLDAFGGIATVCCGHCHPYVVDSIVNQIK-RIQHS--TVLYL--N---HAIADFA-EALASKMPGNLKVVFF-TNSGTEA 170 (447)
Q Consensus 101 ylD~~~g~~~~~lGh~~p~v~~A~~~~l~-~~~~~--~~~~~--~---~~~~ela-e~L~~~~~~~~~~v~~-~~sGseA 170 (447)
.|++.++-. +.+|+|.+|+.+++. .+.+. ...+. . ....+++ +++++.++. +.+.+ ++||++|
T Consensus 47 ~i~l~~~~~-----~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~--~~~~v~~~sGs~a 119 (447)
T 3h7f_A 47 TLEMIASEN-----FVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGA--EFANVQPHSGAQA 119 (447)
T ss_dssp SEECCTTCC-----CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCCSSHHHH
T ss_pred ceeEecCCC-----CCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCC--CceEEEeCCHHHH
Confidence 355554332 348999999998885 33221 11111 1 1335567 888888854 34555 9999999
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCCcccCc-hhh-hhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235 171 NELAIMMARLYTGCNDIISLRNAYHGNA-AGT-MGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID 248 (447)
Q Consensus 171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~-~~~-~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~ 248 (447)
++.+++.++. .++.|++.+++|++.. .+. +...+. .+..++.|... ..+..| .+++++.+.
T Consensus 120 ~~~a~~~~~~--~Gd~Vl~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~-~~~~~d----~~~l~~~i~ 182 (447)
T 3h7f_A 120 NAAVLHALMS--PGERLLGLDLANGGHLTHGMRLNFSGK----------LYENGFYGVDP-ATHLID----MDAVRATAL 182 (447)
T ss_dssp HHHHHHHHCC--TTCEEEEECGGGTCCGGGTCTTSHHHH----------SSEEEEECCCT-TTCSCC----HHHHHHHHH
T ss_pred HHHHHHHhcC--CCCEEEecCcccccccchhhhhhhcCC----------eeEEEEcCcCc-ccCCcC----HHHHHHHHH
Confidence 9999987653 5688999999987732 211 111110 11222222110 112234 577777775
Q ss_pred ccCCCCeEEEEE-ccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccc-cCccccCCCcccccccCCCCCEE--Eeec
Q 013235 249 FGTSGHVAGFLS-ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ-AGFARTGSHFWGFEAHGVVPDIV--TMAK 324 (447)
Q Consensus 249 ~~~~~~~aavi~-Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tGfgr~G~~~~~~~~~gv~pDiv--t~sK 324 (447)
.. ++.++++ .|+++.++ ++++|+++|++||++||+||+| +|+.+.| ..... .. ..|++ +++|
T Consensus 183 ~~---~~~~i~~~~~~~~~~~-------~l~~i~~l~~~~g~lli~Dea~~~g~~~~g-~~~~~--~~-~~di~~~s~sK 248 (447)
T 3h7f_A 183 EF---RPKVIIAGWSAYPRVL-------DFAAFRSIADEVGAKLLVDMAHFAGLVAAG-LHPSP--VP-HADVVSTTVHK 248 (447)
T ss_dssp HH---CCSEEEEECSSCCSCC-------CHHHHHHHHHHHTCEEEEECTTTHHHHHTT-SSCCS--TT-TCSEEEEESSG
T ss_pred hc---CCeEEEEcCCCCCCcc-------CHHHHHHHHHHcCCEEEEECCchhhhhcCC-CCCCC--CC-CCcEEEecCCc
Confidence 42 2335555 56665432 5999999999999999999996 5555555 22211 11 24777 4689
Q ss_pred cccCCccccccccCHHHHHhhcCCcccccCCCChH-HHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013235 325 GIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPV-CTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGI 400 (447)
Q Consensus 325 ~lg~G~pigav~~~~~i~~~l~~~~~~~T~~~np~-a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~ 400 (447)
+++ |.+.|++++++++++.+....+..++++++. .++++.+++..+.+ +++.+++.++.+++.+.|.++..+.+.
T Consensus 249 ~l~-G~~gG~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g 327 (447)
T 3h7f_A 249 TLG-GGRSGLIVGKQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAG 327 (447)
T ss_dssp GGC-CCSCEEEEECGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTT
T ss_pred CCC-CCCeEEEEECHHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 995 6788999999998887765433344554333 34555555655443 246777888888888888765211111
Q ss_pred eeeEe--ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235 401 IGDVR--GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF 444 (447)
Q Consensus 401 i~~vr--g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~ 444 (447)
+..+. ..+.++.+++.... . ....+.+.|.++||++.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~l~~~GI~v~ 366 (447)
T 3h7f_A 328 VSVVSGGTDVHLVLVDLRDSP----L---DGQAAEDLLHEVGITVN 366 (447)
T ss_dssp CEEGGGSCSSSEEEEECTTSS----C---CHHHHHHHHHHTTEECB
T ss_pred eEEecCCCCCCEEEEEcCCCC----C---CHHHHHHHHHHCCeEEe
Confidence 21111 23456666653211 0 12345556667799987
No 174
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.81 E-value=6.3e-20 Score=192.66 Aligned_cols=210 Identities=14% Similarity=0.043 Sum_probs=137.2
Q ss_pred cccCCCCCHHHHHHHHHHHHhcccc-cccccchHHHHHHHHHHHh----CCCC-CceEEEcCCHHHHHHHHHHHH--H-h
Q 013235 110 TVCCGHCHPYVVDSIVNQIKRIQHS-TVLYLNHAIADFAEALASK----MPGN-LKVVFFTNSGTEANELAIMMA--R-L 180 (447)
Q Consensus 110 ~~~lGh~~p~v~~A~~~~l~~~~~~-~~~~~~~~~~elae~L~~~----~~~~-~~~v~~~~sGseA~e~Aik~a--r-~ 180 (447)
....++.+|++++++.+++....+. ...+......++++.+.+. .+.. .++|++++||++|+..+++.. + .
T Consensus 110 ~g~~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l 189 (533)
T 3f6t_A 110 HTELGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHL 189 (533)
T ss_dssp HHTTCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhc
Confidence 3445667899999999888764443 2233345556666666554 2211 368999999999999999852 1 1
Q ss_pred hcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEE
Q 013235 181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS 260 (447)
Q Consensus 181 ~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~ 260 (447)
..+++.|++.+++|++.......... .+..++.+......|+.| .++|++.+. + ++.+|++
T Consensus 190 ~~~gd~Viv~~p~~~~~~~~~~~~g~-----------~~~~v~~~~~~~~~~~~d----~~~l~~~l~---~-~~k~v~l 250 (533)
T 3f6t_A 190 LKKGDKIAINEPIFTPYLRIPELKDY-----------ELVEVDLHSYEKNDWEIE----PNEIEKLKD---P-SIKALIV 250 (533)
T ss_dssp SCTTCEEEEESSCCHHHHTSGGGGGS-----------EEEEECCCEETTTTSEEC----HHHHHHHSC---T-TEEEEEE
T ss_pred cCCcCEEEEcCCCcHHHHHHHHHcCC-----------eEEEEEecCCcccCCCCC----HHHHHHHhC---C-CCeEEEE
Confidence 23458899999999876544332211 223333221111223334 566776653 2 5666666
Q ss_pred ccccCCCceeeCCCChHHHHHHHHH-HhCCEEEEeccccCccccCCCcccccccCCCCCEEEeecccc-CCccccccccC
Q 013235 261 ESIQGVGGIIELAPGYLPAVYKSIK-KAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-NGIPLGAVVTT 338 (447)
Q Consensus 261 Epi~~~gG~~~~~~~~l~~l~~l~~-~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg-~G~pigav~~~ 338 (447)
+..++++|.+. +.+.+++|.++|+ +||+++|+||+|.+|...+..+.. ...+....+.+|||.+| .|+|+|+++++
T Consensus 251 ~~p~NPtG~~~-~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~-~~~~~~i~~~S~SK~~g~~G~RiG~l~~~ 328 (533)
T 3f6t_A 251 VNPTNPTSKEF-DTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYS-VVPYNTMLVYSYSKLFGCTGWRLGVIALN 328 (533)
T ss_dssp ESSCTTTCBCC-CHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHH-HSGGGEEEEEESHHHHTCGGGCEEEEEEE
T ss_pred eCCCCCCcccc-CHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhh-cCCCCEEEEecCcccCCCcccceEEEEEC
Confidence 55567777765 6778999999999 689999999999998765422222 12233455668999998 79999999998
Q ss_pred HH
Q 013235 339 PE 340 (447)
Q Consensus 339 ~~ 340 (447)
++
T Consensus 329 ~~ 330 (533)
T 3f6t_A 329 EK 330 (533)
T ss_dssp SS
T ss_pred cH
Confidence 76
No 175
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.81 E-value=2.8e-19 Score=177.31 Aligned_cols=291 Identities=15% Similarity=0.039 Sum_probs=175.2
Q ss_pred CcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCe
Q 013235 107 GIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCND 186 (447)
Q Consensus 107 g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ 186 (447)
+.+.+++| .||+|.+|+.+.+.. ...++++...+|+++|+++++. +..++++||++|++.+++.+... +.+.
T Consensus 19 ~~~~~~~g-~~p~v~~ai~~~~~~----~~~~~~~~~~~l~~~la~~~~~--~~~i~~~~g~~a~~~a~~~~~~~-g~~~ 90 (359)
T 3pj0_A 19 GNGPRNVG-VLTEALQNIDDNLES----DIYGNGAVIEDFETKIAKILGK--QSAVFFPSGTMAQQIALRIWADR-KENR 90 (359)
T ss_dssp SSSCCBHH-HHHHHTTTSCTTCBC----CBTTBSHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHHHHH-HTCC
T ss_pred CCCccccC-CCHHHHHHHHhhccc----CcccCCHHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHHHhc-CCCc
Confidence 33444555 578888877763322 2234577889999999999854 34467799999999999977653 3344
Q ss_pred EEEEcCCcccCch--hhh-hccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccc
Q 013235 187 IISLRNAYHGNAA--GTM-GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESI 263 (447)
Q Consensus 187 ii~~~~~yHG~~~--~~~-~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi 263 (447)
+|+....+|.... ... ... |...+..|.. .+..| .++|++. .+++++|++++.
T Consensus 91 vvi~~~~~~~~~~~~~~~~~~~------------g~~~~~v~~~---~~~~d----~~~l~~~-----~~~~~~v~~~~p 146 (359)
T 3pj0_A 91 RVAYHPLSHLEIHEQDGLKELQ------------QITPLLLGTA---NQLLT----IDDIKSL-----REPVSSVLIELP 146 (359)
T ss_dssp EEEECTTCHHHHSSTTHHHHHH------------CCEEEECSCT---TSCCC----HHHHHTC-----SSCCSEEEEESS
T ss_pred EEEEeccceeeehhcchHHHhc------------CceEEecCCc---CCCcC----HHHHHhc-----cCCceEEEEEec
Confidence 5666666654322 111 111 2233333321 12234 4555544 236788888877
Q ss_pred cCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCcc--ccCCCcccccccCCCCCEE--EeeccccCCccccccccCH
Q 013235 264 QGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA--RTGSHFWGFEAHGVVPDIV--TMAKGIGNGIPLGAVVTTP 339 (447)
Q Consensus 264 ~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfg--r~G~~~~~~~~~gv~pDiv--t~sK~lg~G~pigav~~~~ 339 (447)
++++|....+.+.+++|.++|++||++||+||+|..+. ..|.. ...+....|++ +++|+++++.. |++++++
T Consensus 147 ~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~---~~~~~~~~d~~~~s~sK~~~~~~g-g~~~~~~ 222 (359)
T 3pj0_A 147 QREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKS---AEEICALFDSVYVSFYKGIGGIAG-AILAGND 222 (359)
T ss_dssp BGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCC---HHHHHTTCSEEEEESSSTTCCSSC-EEEEECH
T ss_pred ccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCC---HHHhhccCCEEEEeccccCCCcce-EEEECCH
Confidence 66653344578899999999999999999999985332 11211 11111234776 78898876533 6778899
Q ss_pred HHHHhhcCC--cc-cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE--eecceeEEEE
Q 013235 340 EIAEVLTRR--NY-FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV--RGRGFLLGVE 414 (447)
Q Consensus 340 ~i~~~l~~~--~~-~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v--rg~Gl~~gie 414 (447)
++++.+... .+ .+++..++.+ +++.++|+... +..++..+..+++.+.|+++ +.+.-. +..+.++.+.
T Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~~~-~a~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~ 295 (359)
T 3pj0_A 223 DFVQEAKIWKRRYGGDLISLYPYI-LSADYYFEKRI--GKMAEYFEAAKGLAERFNSC----SGVKTVPEVPVSNMFHVY 295 (359)
T ss_dssp HHHHHHHHHHHHTTCCCSCCHHHH-HHHHHHHHHHG--GGHHHHHHHHHHHHHHHHTS----TTEEEESSSCSSSEEEEE
T ss_pred HHHHHHHHHHHHhCCCcchhHHHH-HHHHHHHHHHH--HHhHHHHHHHHHHHHHHhhC----CCceeeccCCcceEEEEE
Confidence 999877541 11 1333344444 44456665432 33445666777777777653 223221 3556677777
Q ss_pred EeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235 415 FVTDRQLKTPAKAETLYIMDKMKGICALFFSQ 446 (447)
Q Consensus 415 l~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~ 446 (447)
+.. +.......+.+.|.++||++.+.
T Consensus 296 ~~~------~~~~~~~~l~~~l~~~GV~v~~g 321 (359)
T 3pj0_A 296 FEN------SADEIGAILTKIQDETGVGISGY 321 (359)
T ss_dssp ESS------CHHHHHHHHHHHHHHHCEECCSC
T ss_pred ecC------ccchhHHHHHHHHHhcCcEecCC
Confidence 632 11123567889999999999764
No 176
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.81 E-value=1.9e-18 Score=174.65 Aligned_cols=300 Identities=12% Similarity=0.039 Sum_probs=170.4
Q ss_pred eEEEecCCcccccCCCCCHHHHHHHHHHHHh-ccc--cc-cccc-chH----HHHHHHHHHHhCCCCCceEEEcCCHHHH
Q 013235 100 RYLDAFGGIATVCCGHCHPYVVDSIVNQIKR-IQH--ST-VLYL-NHA----IADFAEALASKMPGNLKVVFFTNSGTEA 170 (447)
Q Consensus 100 ~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~-~~~--~~-~~~~-~~~----~~elae~L~~~~~~~~~~v~~~~sGseA 170 (447)
..|++.++.. +.||+|.+|+.+++.. ..+ .. ..|. ... ...+++++++.++.+.+++ +++||++|
T Consensus 26 ~~i~l~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i-~~~sGt~a 99 (417)
T 3n0l_A 26 EGLEMIASEN-----FTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANV-QPNSGSQA 99 (417)
T ss_dssp HSEECCTTCC-----CCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEEC-CCSSHHHH
T ss_pred cCeeeecccC-----CCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcce-EeccHHHH
Confidence 3466655443 4589999999988843 211 11 1111 122 2234557788776544444 56888999
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc
Q 013235 171 NELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG 250 (447)
Q Consensus 171 ~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~ 250 (447)
++.+++.+ ..+++.|++..++|++.......... ...++..++.+.. ..+..| .++|++.+...
T Consensus 100 ~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~--------~g~~~~~~~~~~~--~~~~~d----~~~l~~~i~~~ 163 (417)
T 3n0l_A 100 NQGVYAAL--INPGDKILGMDLSHGGHLTHGAKVSS--------SGKMYESCFYGVE--LDGRID----YEKVREIAKKE 163 (417)
T ss_dssp HHHHHHHH--SCTTCEEEEECC------------------------CCSEEEEECCC--TTSSCC----HHHHHHHHHHH
T ss_pred HHHHHHHh--cCCCCEEEecccccccccchhhhhhh--------hcceeeeEeccCC--CCCCcC----HHHHHHHHHhc
Confidence 99999876 33668999999999865331111000 0012222222211 123244 67777777632
Q ss_pred CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCCEEEee--cccc
Q 013235 251 TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA--KGIG 327 (447)
Q Consensus 251 ~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pDivt~s--K~lg 327 (447)
++++|++.+. ..|.+.+ +++|.++|++||+++|+||+|+ |+...| .... ... ..|++++| |++
T Consensus 164 ---~~~~v~~~~~--~~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~-~~~~--~~~-~~di~~~s~sK~l- 229 (417)
T 3n0l_A 164 ---KPKLIVCGAS--AYARVID----FAKFREIADEIGAYLFADIAHIAGLVVAG-EHPS--PFP-YAHVVSSTTHKTL- 229 (417)
T ss_dssp ---CCSEEEECCS--SCCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTT-SSCC--CTT-TCSEEEEESSTTT-
T ss_pred ---CCeEEEECCc--ccCccCC----HHHHHHHHHHcCCEEEEECccchhhhhcc-cCCC--ccc-cceEEEeeCcccc-
Confidence 3456665432 2366554 9999999999999999999974 332233 1110 011 35898877 999
Q ss_pred CCccccccccC-HHHHHhhcCCcc-cccCCCChHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 013235 328 NGIPLGAVVTT-PEIAEVLTRRNY-FNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIG 402 (447)
Q Consensus 328 ~G~pigav~~~-~~i~~~l~~~~~-~~T~~~np~a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~ 402 (447)
+|.+.|+++++ +++++.+..... ..+.+.++..+++..++++.+.+ +++.+++.++.+++.+.|.+. .+..+.
T Consensus 230 ~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~ 307 (417)
T 3n0l_A 230 RGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR--KFKLVS 307 (417)
T ss_dssp CSCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT--TCEEGG
T ss_pred CCCCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC--Cceecc
Confidence 56678999998 788887754322 23334456666666666765432 256667777778888877763 221111
Q ss_pred eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 403 DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 403 ~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
-...+.++.+.+.... .....+.+.|.++||++..
T Consensus 308 -~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~ 342 (417)
T 3n0l_A 308 -DGTDNHLVLMSFLDRE-------FSGKDADLALGNAGITANK 342 (417)
T ss_dssp -GSCSSSEEEEECTTSS-------SCHHHHHHHHHHTTEECEE
T ss_pred -CCCCceEEEEEcccCC-------CCHHHHHHHHHHcCeEEec
Confidence 0123446666653211 0134677788899999873
No 177
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.80 E-value=1.6e-18 Score=176.59 Aligned_cols=257 Identities=16% Similarity=0.107 Sum_probs=171.4
Q ss_pred cccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccc
Q 013235 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV 214 (447)
Q Consensus 135 ~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~ 214 (447)
..++.++...+++++|+++++.. ..++++||++|++.+++.+ ..+++.||+..++||+.......+..
T Consensus 52 y~~~~~~~~~~l~~~la~~~g~~--~~v~~~sGt~A~~~~l~~~--~~~gd~vi~~~~~~~~~~~~~~~~~~-------- 119 (421)
T 2ctz_A 52 YSRIMNPTVDVLEKRLAALEGGK--AALATASGHAAQFLALTTL--AQAGDNIVSTPNLYGGTFNQFKVTLK-------- 119 (421)
T ss_dssp CBTTBCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHH--CCTTCEEEECSCCCHHHHHHHHTHHH--------
T ss_pred ccCCCChHHHHHHHHHHHHhCCC--ceEEecCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHHHH--------
Confidence 34556788899999999998643 4577888999999999865 34678899999999987654421110
Q ss_pred cCCCeEeecC-CCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEE
Q 013235 215 VQTGVHHALN-PDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293 (447)
Q Consensus 215 ~~~g~~~~~~-p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~ 293 (447)
..|+..... +. +| .+++++.+. +++++|++|++++++|.+.+ +++|.++|++||+++|+
T Consensus 120 -~~g~~~~~~~~~-------~d----~~~l~~~i~----~~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~~g~~liv 179 (421)
T 2ctz_A 120 -RLGIEVRFTSRE-------ER----PEEFLALTD----EKTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIV 179 (421)
T ss_dssp -HTTCEEEECCTT-------CC----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEE
T ss_pred -HcCCEEEEECCC-------CC----HHHHHHhhc----cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEE
Confidence 013333322 21 13 567777764 27889999999999999886 99999999999999999
Q ss_pred eccccCccccCCCcccccccCCCCCEE--EeeccccC-CccccccccC---HHH----HHhhcCC---cc----------
Q 013235 294 DEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPLGAVVTT---PEI----AEVLTRR---NY---------- 350 (447)
Q Consensus 294 DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pigav~~~---~~i----~~~l~~~---~~---------- 350 (447)
||+|+++|..+ ..+ +..+|++ +++|.+++ |.|+|+++.. +++ .+.+... .+
T Consensus 180 D~~~~~~g~~~-~~~-----~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~ 253 (421)
T 2ctz_A 180 DNTFGMGGYLL-RPL-----AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGE 253 (421)
T ss_dssp ECGGGGGGTSC-CGG-----GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGG
T ss_pred ECCcccccccC-Ccc-----ccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcch
Confidence 99997787665 332 3458998 68899996 7889887764 222 1222110 00
Q ss_pred -----------cc--cCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE-------------
Q 013235 351 -----------FN--TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV------------- 404 (447)
Q Consensus 351 -----------~~--T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------- 404 (447)
.. ....+|+.+++++..|+.+.. ..++..++.+++.+.|.+ ++.+..+
T Consensus 254 ~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~--r~~~~~~~a~~l~~~L~~----~p~v~~v~~p~~~~~~~~~~ 327 (421)
T 2ctz_A 254 LAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSL--RAERHVENTLHLAHWLLE----QPQVAWVNYPGLPHHPHHDR 327 (421)
T ss_dssp GHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHHT----CTTEEEEECTTSTTCTTHHH
T ss_pred hHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHHH--HHHHHHHhHHHHHHHHHh----CCCeeEEECCCCCCCCCHHH
Confidence 01 125689998888888875532 233334555555555544 4445444
Q ss_pred ------eecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCce
Q 013235 405 ------RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICAL 442 (447)
Q Consensus 405 ------rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvl 442 (447)
+|.|.|++|++..+ ...+.++.+.|...++.
T Consensus 328 ~~~~~~~~~g~ivsf~l~~~-------~~~~~~~~~~l~~~~~~ 364 (421)
T 2ctz_A 328 AQKYFKGKPGAVLTFGLKGG-------YEAAKRFISRLKLISHL 364 (421)
T ss_dssp HHHHHTTCCCSEEEEEETTH-------HHHHHHHHHTCSSSEEC
T ss_pred HHHhccCCCceEEEEEeCCC-------HHHHHHHHHhCCcceec
Confidence 58899999999421 12345566665444433
No 178
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.80 E-value=5.6e-19 Score=178.02 Aligned_cols=273 Identities=15% Similarity=0.057 Sum_probs=160.8
Q ss_pred EEEecCCcccccCCCC--CHHHHHHHHHHHHhcccccccccc-hHHHHHHHHHHHhCCCC------CceEEE--cCCHHH
Q 013235 101 YLDAFGGIATVCCGHC--HPYVVDSIVNQIKRIQHSTVLYLN-HAIADFAEALASKMPGN------LKVVFF--TNSGTE 169 (447)
Q Consensus 101 ylD~~~g~~~~~lGh~--~p~v~~A~~~~l~~~~~~~~~~~~-~~~~elae~L~~~~~~~------~~~v~~--~~sGse 169 (447)
.|||..|......++. .|.+.+++.+.+... ....|.. ....++.+.+++++... .++|++ ++||++
T Consensus 30 ~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~ 107 (401)
T 7aat_A 30 KMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKK--MDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTG 107 (401)
T ss_dssp CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTT--CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred ceeeeeeeEECCCCCEechHHHHHHHHHhcccc--cccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchH
Confidence 5777777652223332 246777776655431 2223332 33456666666655321 467777 999999
Q ss_pred HHHHHHHHHHhhc-CCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHH
Q 013235 170 ANELAIMMARLYT-GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLID 248 (447)
Q Consensus 170 A~e~Aik~ar~~t-~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~ 248 (447)
|+..+++..+.+. +++.|++.+++|++........ |...+..|......++.| .+++++.++
T Consensus 108 al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~l~ 170 (401)
T 7aat_A 108 SLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDA-------------GLQLQAYRYYDPKTCSLD----FTGAMEDIS 170 (401)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHT-------------TCEEEEEECEETTTTEEC----HHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHc-------------CCeeEeeeeeccccCccC----HHHHHHHHH
Confidence 9999998766443 4688999999998765443322 222222221111122234 455555555
Q ss_pred ccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC--Cccccccc-CCCCCE---EEe
Q 013235 249 FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS--HFWGFEAH-GVVPDI---VTM 322 (447)
Q Consensus 249 ~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~--~~~~~~~~-gv~pDi---vt~ 322 (447)
+. ..++.++++...++++|.+. +.+.+++|.++|++||+++|+||+|.+|+..+. ..+....+ +..+++ .++
T Consensus 171 ~~-~~~~~~v~i~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 248 (401)
T 7aat_A 171 KI-PEKSIILLHACAHNPTGVDP-RQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSY 248 (401)
T ss_dssp TS-CTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEEC
T ss_pred hC-CCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecC
Confidence 43 33567777777788888764 778899999999999999999999999876541 12223221 233444 479
Q ss_pred ecccc-CCcccccccc---CHHHH----HhhcCCcccccCCCChHHHHHHHHHHHH--H----h--hhhHHHHHHHHHHH
Q 013235 323 AKGIG-NGIPLGAVVT---TPEIA----EVLTRRNYFNTFGGNPVCTAAGHAVLKV--I----Q--KDKLQNNAHVVGSY 386 (447)
Q Consensus 323 sK~lg-~G~pigav~~---~~~i~----~~l~~~~~~~T~~~np~a~aaala~L~~--i----~--~~~l~~~~~~~g~~ 386 (447)
||.++ .|+++|++++ +++.. +.+.......+.+.+.++++++.+.|+. + . -++..++++++.++
T Consensus 249 sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~ 328 (401)
T 7aat_A 249 AKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQ 328 (401)
T ss_dssp TTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 7999999775 66633 3333211223334444444444444421 0 0 12334555566666
Q ss_pred HHHHHHHH
Q 013235 387 LKERLTAL 394 (447)
Q Consensus 387 l~~~L~~l 394 (447)
|.+.|+++
T Consensus 329 l~~~L~~~ 336 (401)
T 7aat_A 329 LVSNLKKE 336 (401)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 66666554
No 179
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.80 E-value=3.7e-18 Score=171.20 Aligned_cols=281 Identities=15% Similarity=0.113 Sum_probs=177.4
Q ss_pred CHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCccc
Q 013235 117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHG 196 (447)
Q Consensus 117 ~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG 196 (447)
.|++.+|+.++++... ...+..+...+++++|+++++.. ..++++||++|++.+++.++ ..++++|++..++||+
T Consensus 16 ~~~~~~a~~~~l~~~~--~~~~~~~~~~~l~~~la~~~~~~--~~i~~~sGt~al~~~l~~l~-~~~gd~Vi~~~~~~~~ 90 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQ--WWRMGGDEVNSFEREFAAHHGAA--HALAVTNGTHALELALQVMG-VGPGTEVIVPAFTFIS 90 (388)
T ss_dssp CHHHHHHHHHHHHTSC--CBTTTCSHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCTH
T ss_pred CHHHHHHHHHHHHcCC--eeecCCHHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCccHH
Confidence 3899999999987632 12345677889999999999643 45667788999999999763 2356789999999998
Q ss_pred CchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCCh
Q 013235 197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGY 276 (447)
Q Consensus 197 ~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~ 276 (447)
........ |...+..|... ..+..| .++|++.+. .++++|+ |++ .+|.+.+
T Consensus 91 ~~~~~~~~-------------g~~~~~v~~~~-~~~~~d----~~~l~~~i~----~~~~~v~--~~n-~tG~~~~---- 141 (388)
T 1b9h_A 91 SSQAAQRL-------------GAVTVPVDVDA-ATYNLD----PEAVAAAVT----PRTKVIM--PVH-MAGLMAD---- 141 (388)
T ss_dssp HHHHHHHT-------------TCEEEEECBCT-TTCCBC----HHHHHHHCC----TTEEEEC--CBC-GGGCCCC----
T ss_pred HHHHHHHc-------------CCEEEEEecCC-CcCCCC----HHHHHHhcC----cCceEEE--EeC-CccCcCC----
Confidence 76544322 22222222111 112234 567777664 2566666 655 4566654
Q ss_pred HHHHHHHHHHhCCEEEEeccccC-ccccCCCcccccccCCCCCEEEee----ccccCCccccccccCHH-H--HHhhcC-
Q 013235 277 LPAVYKSIKKAGGLCIADEVQAG-FARTGSHFWGFEAHGVVPDIVTMA----KGIGNGIPLGAVVTTPE-I--AEVLTR- 347 (447)
Q Consensus 277 l~~l~~l~~~~g~llI~DEv~tG-fgr~G~~~~~~~~~gv~pDivt~s----K~lg~G~pigav~~~~~-i--~~~l~~- 347 (447)
+++|.++|++||+++|+||+|+. +...| .. +..+ +|++++| |++++| ++|+++++++ + ++.+..
T Consensus 142 l~~i~~la~~~~~~li~D~a~~~g~~~~~-~~--~~~~---~~i~~~S~s~~K~l~g~-~~G~~~~~~~~~~~~~~~~~~ 214 (388)
T 1b9h_A 142 MDALAKISADTGVPLLQDAAHAHGARWQG-KR--VGEL---DSIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLR 214 (388)
T ss_dssp HHHHHHHHHHHTCCBCEECTTCTTCEETT-EE--GGGS---SSCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEecchhcCCccCC-ee--cccc---cceEEEEccCCCcccCC-CeEEEEECCHHHHHHHHHHHH
Confidence 99999999999999999999973 33333 11 2222 2565554 888765 6899998875 6 454421
Q ss_pred Ccc--------------cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeee----Eeecce
Q 013235 348 RNY--------------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD----VRGRGF 409 (447)
Q Consensus 348 ~~~--------------~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~----vrg~Gl 409 (447)
..+ +.++..+++.++++.+.++.+++ ..++.+++.+++.+.|+++ ........ .+..+.
T Consensus 215 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~~--~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~ 291 (388)
T 1b9h_A 215 HSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDE--QIAVRDERWTLLSRLLGAI-DGVVPQGGDVRADRNSHY 291 (388)
T ss_dssp TBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHHTS-TTCEECCCCTTCCBCCCS
T ss_pred HhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccC-CCccccCCCcCCCccceE
Confidence 110 12233567777777676665533 5566677777777777654 11111110 123467
Q ss_pred eEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeeccC
Q 013235 410 LLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQY 447 (447)
Q Consensus 410 ~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~~ 447 (447)
++.+.+... ......++.+.|.++||.++..|
T Consensus 292 ~~~~~~~~~------~~~~~~~l~~~L~~~gI~v~~~~ 323 (388)
T 1b9h_A 292 MAMFRIPGL------TEERRNALVDRLVEAGLPAFAAF 323 (388)
T ss_dssp EEEEECTTC------CHHHHHHHHHHHHHTTCCEEECC
T ss_pred EEEEEeCCc------CcccHHHHHHHHHHCCCCccccc
Confidence 888877311 11235678999999999997643
No 180
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.80 E-value=3.8e-18 Score=171.99 Aligned_cols=287 Identities=13% Similarity=0.066 Sum_probs=181.8
Q ss_pred CHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCccc
Q 013235 117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHG 196 (447)
Q Consensus 117 ~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG 196 (447)
+|++.+++.+.++.. +... ..+...+++++|++++. .+.+++++||++|++.+++.++ ..++++|++..++|++
T Consensus 11 ~~~v~~a~~~~~~~~-~~~~--~g~~~~~l~~~la~~~~--~~~v~~~~ggt~al~~~~~~l~-~~~gd~Vl~~~~~~~~ 84 (394)
T 1o69_A 11 GGNELKYIEEVFKSN-YIAP--LGEFVNRFEQSVKDYSK--SENALALNSATAALHLALRVAG-VKQDDIVLASSFTFIA 84 (394)
T ss_dssp -CCHHHHHHHHHHHT-TTSC--TTHHHHHHHHHHHHHHC--CSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCGG
T ss_pred CHHHHHHHHHHHHcC-CccC--CChHHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHcC-CCCCCEEEECCCccHH
Confidence 467888888887652 1111 13557899999999985 3789999999999999999763 2356789999999998
Q ss_pred CchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCCh
Q 013235 197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGY 276 (447)
Q Consensus 197 ~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~ 276 (447)
........ |...+..|.. ..+..| .+++++.+... ++++++|++++ +.|.. ..
T Consensus 85 ~~~~~~~~-------------g~~~~~v~~~--~~~~~d----~~~l~~~i~~~-~~~~~~v~~~~---~~G~~----~~ 137 (394)
T 1o69_A 85 SVAPICYL-------------KAKPVFIDCD--ETYNID----VDLLKLAIKEC-EKKPKALILTH---LYGNA----AK 137 (394)
T ss_dssp GTHHHHHT-------------TCEEEEECBC--TTSSBC----HHHHHHHHHHC-SSCCCEEEEEC---GGGCC----CC
T ss_pred HHHHHHHc-------------CCEEEEEEeC--CCCCcC----HHHHHHHHhcc-cCCceEEEEEC---CCCCh----hh
Confidence 77654432 2222222211 122234 56777777642 12467888876 34433 44
Q ss_pred HHHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCCEEEe--eccccCCccccccccC-HHHHHhhcCC-ccc
Q 013235 277 LPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIPLGAVVTT-PEIAEVLTRR-NYF 351 (447)
Q Consensus 277 l~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~pigav~~~-~~i~~~l~~~-~~~ 351 (447)
+++|.++|+++|+++|+||+|+ |+.+.|. ..+ .++ .+|+.++ +|++++ ..+|+++++ +++++.+... .+.
T Consensus 138 l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-~~~--~~~-~~~~~s~s~~K~l~~-~~~G~~~~~~~~l~~~l~~~~~~~ 212 (394)
T 1o69_A 138 MDEIVEICKENDIVLIEDAAEALGSFYKNK-ALG--TFG-EFGVYSYNGNKIITT-SGGGMLIGKNKEKIEKARFYSTQA 212 (394)
T ss_dssp HHHHHHHHHHTTCEEEEECTTCTTCEETTE-ETT--SSS-SEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHTBTC
T ss_pred HHHHHHHHHHcCCEEEEECcCcccceeCCc-ccc--ccc-CcEEEEEeCCccCCC-CCceEEEECCHHHHHHHHHHHHhc
Confidence 9999999999999999999998 7655552 111 111 3688888 577764 579999995 7887766431 111
Q ss_pred -------------ccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe--ecce-eEEEEE
Q 013235 352 -------------NTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR--GRGF-LLGVEF 415 (447)
Q Consensus 352 -------------~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr--g~Gl-~~giel 415 (447)
..++.+++.++++++.++.+++ ..++.+++.+++++.|.++ ........ ..+. ++.+.+
T Consensus 213 ~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~--~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~i~~ 287 (394)
T 1o69_A 213 RENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQ--RVLKKREIYEWYKEFLGEY---FSFLDELENSRSNRWLSTALI 287 (394)
T ss_dssp CCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHTTT---EECCCCCTTEECCCSSEEEEE
T ss_pred cccCccccccccCcccCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccc---ccccCCCCCCcceeEEEEEEe
Confidence 1122567888888777766543 6678888888888888775 21111110 1122 355665
Q ss_pred eeCC-----------CCCCC--CHHHHHHHHHHHHhCCceeecc
Q 013235 416 VTDR-----------QLKTP--AKAETLYIMDKMKGICALFFSQ 446 (447)
Q Consensus 416 ~~~~-----------~~~~p--~~~~~~~~~~~l~~~Gvlv~~~ 446 (447)
..+. ....+ ......++.+.|.++||.+++.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~ 331 (394)
T 1o69_A 288 NFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPL 331 (394)
T ss_dssp SCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCC
T ss_pred cchhhccccccccccccccccccccCHHHHHHHHHHcCCccccc
Confidence 3210 00000 0123567889999999998764
No 181
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.79 E-value=8e-18 Score=174.08 Aligned_cols=285 Identities=15% Similarity=0.128 Sum_probs=181.9
Q ss_pred CCCCCHHHHHHHHHHHHhccccc----ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh-------
Q 013235 113 CGHCHPYVVDSIVNQIKRIQHST----VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------- 181 (447)
Q Consensus 113 lGh~~p~v~~A~~~~l~~~~~~~----~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~------- 181 (447)
.+|.+|++++++.+++..+.... .........+++++|++.++.+ ..+++++||++|+..|+++++.+
T Consensus 75 ~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~-~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~ 153 (474)
T 1wyu_B 75 TMKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMD-AITLEPAAGAHGELTGILIIRAYHEDRGEG 153 (474)
T ss_dssp CCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCS-EEECCCSSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred cccCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCC-ceeecChHHHHHHHHHHHHHHHHHHhcCCc
Confidence 35888999998887622211000 0011245678888888887543 24568899999999999988754
Q ss_pred cCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEc
Q 013235 182 TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE 261 (447)
Q Consensus 182 t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~E 261 (447)
+++++||+.+ .+|+....+....+. .+..++... .+..| +++|++.+. +++++|+++
T Consensus 154 ~~r~~Vlv~~-~~h~~~~~~~~~~G~----------~vv~v~~~~----~~~~d----~~~L~~~i~----~~t~~v~~~ 210 (474)
T 1wyu_B 154 RTRRVVLVPD-SAHGSNPATASMAGY----------QVREIPSGP----EGEVD----LEALKRELG----PHVAALMLT 210 (474)
T ss_dssp TTCCEEEEET-TSCTHHHHHHHHTTC----------EEEEECBCT----TSSBC----HHHHHHHCS----TTEEEEEEC
T ss_pred cCCCEEEEeC-CcChhhHHHHHHCCC----------EEEEecCCC----CCCcC----HHHHHHhhC----CCceEEEEE
Confidence 2234777776 566766655443321 123333211 12224 677777764 267888888
Q ss_pred cccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEe--eccccC-----Cccccc
Q 013235 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGN-----GIPLGA 334 (447)
Q Consensus 262 pi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~--sK~lg~-----G~piga 334 (447)
.. +..|.+. +.+++|.++|++||+++|+||+|..+ ..| .. ....++ +|++++ +|.+++ |+++|+
T Consensus 211 ~p-n~~G~~~---~~l~~i~~l~~~~g~~li~Dea~~~~-~~g-~~-~~~~~g--~di~~~s~~K~~~~p~g~gG~~~G~ 281 (474)
T 1wyu_B 211 NP-NTLGLFE---RRILEISRLCKEAGVQLYYDGANLNA-IMG-WA-RPGDMG--FDVVHLNLHKTFTVPHGGGGPGSGP 281 (474)
T ss_dssp SS-CTTSCCC---TTHHHHHHHHHHHTCEEEEEGGGGGG-TTT-TC-CHHHHT--CSEEECCTTTTTCCCCTTSCCCCCC
T ss_pred CC-CCCcccC---CCHHHHHHHHHHcCCEEEEeCchhhh-hcc-CC-CcccCC--CcEEEEeCccccccCCCCCCCCeEE
Confidence 74 4577762 34999999999999999999999533 233 11 112233 799987 798862 469999
Q ss_pred cccCHHHHHhhcCCc-------------------ccccCCCChHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHH
Q 013235 335 VVTTPEIAEVLTRRN-------------------YFNTFGGNPVCTAAGHAVLKVIQKDKL---QNNAHVVGSYLKERLT 392 (447)
Q Consensus 335 v~~~~~i~~~l~~~~-------------------~~~T~~~np~a~aaala~L~~i~~~~l---~~~~~~~g~~l~~~L~ 392 (447)
+++++++++.+.... ...++.+|+++++++.+.|+.+..+.+ .++..++.+++.++|+
T Consensus 282 ~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~ 361 (474)
T 1wyu_B 282 VGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLK 361 (474)
T ss_dssp EEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999887765210 113455789999999998876654444 6777888888888888
Q ss_pred HHHHhcCCeeeEeeccee--EEEEEeeCCCCCCCCHHHHHHHHHHHHhCCcee
Q 013235 393 ALKDKYGIIGDVRGRGFL--LGVEFVTDRQLKTPAKAETLYIMDKMKGICALF 443 (447)
Q Consensus 393 ~l~~~~~~i~~vrg~Gl~--~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv 443 (447)
++ .+..+. +.+.+ +.+.+ .. . ....++.+.|+++||++
T Consensus 362 ~~--g~~~~~---~~~~~~~~~~~~-~~-----~--~~~~~l~~~L~~~Gi~~ 401 (474)
T 1wyu_B 362 EK--GYRVPY---DGPSMHEFVAQP-PE-----G--FRALDLAKGLLELGFHP 401 (474)
T ss_dssp HT--TCBCSS---CSSCCSCEEEBC-ST-----T--CCHHHHHHHHHHTTCCC
T ss_pred hc--CcEecC---CCCcceEEEEEc-CC-----C--CCHHHHHHHHHHCCccc
Confidence 75 333211 11222 23333 11 0 12467889999999976
No 182
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.79 E-value=1.2e-17 Score=167.70 Aligned_cols=276 Identities=14% Similarity=0.123 Sum_probs=179.2
Q ss_pred CHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHH-----hhcCCCeEEEEc
Q 013235 117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR-----LYTGCNDIISLR 191 (447)
Q Consensus 117 ~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar-----~~t~~~~ii~~~ 191 (447)
+|++.+|+.++++...+ ++.+...+++++|+++++. +.++|++||++|++.+++.++ ...++++|++..
T Consensus 14 ~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~--~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~ 87 (390)
T 3b8x_A 14 DDLEYKAIQSVLDSKMF----TMGEYVKQYETQFAKTFGS--KYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPA 87 (390)
T ss_dssp CHHHHHHHHHHHHHTCC----SSCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEES
T ss_pred CHHHHHHHHHHHHcCCC----CCChHHHHHHHHHHHHHCC--CcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECC
Confidence 68999999999877432 3567888999999999864 468899999999999999773 134567899999
Q ss_pred CCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceee
Q 013235 192 NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIE 271 (447)
Q Consensus 192 ~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~ 271 (447)
.+||+........ +. .+..++.. .. .+..| .++|++.+. + ++++|++... .|..
T Consensus 88 ~~~~~~~~~~~~~-g~----------~~~~~~~~--~~-~~~~d----~~~l~~~i~---~-~~~~v~~~~~---~g~~- 141 (390)
T 3b8x_A 88 VSWSTTYYPLQQY-GL----------RVKFVDID--IN-TLNID----IESLKEAVT---D-STKAILTVNL---LGNP- 141 (390)
T ss_dssp SSCHHHHHHHHHT-TC----------EEEEECBC--TT-TCSBC----HHHHHHHCC---T-TEEEEEEECG---GGCC-
T ss_pred CCcHHHHHHHHHc-CC----------EEEEEecC--cc-ccCcC----HHHHHHHhC---c-CCeEEEEECC---ccCh-
Confidence 9999877654322 11 12222211 10 12234 567777664 2 5667776432 2333
Q ss_pred CCCChHHHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCCEEEeeccccCCc---cccccccCH-HHHHhhc
Q 013235 272 LAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMAKGIGNGI---PLGAVVTTP-EIAEVLT 346 (447)
Q Consensus 272 ~~~~~l~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pDivt~sK~lg~G~---pigav~~~~-~i~~~l~ 346 (447)
..+++|.++|++||+++|+||+|+ |... ..+.+|..+|+.+++|..+.++ ..|++++++ ++.+.+.
T Consensus 142 ---~~~~~i~~l~~~~~~~li~D~a~~~g~~~------~~~~~g~~~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~~~~ 212 (390)
T 3b8x_A 142 ---NNFDEINKIIGGRDIILLEDNCESMGATF------NNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEIYHILL 212 (390)
T ss_dssp ---CCHHHHHHHHTTSCCEEEEECTTCTTCEE------TTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHcCCEEEEECcCcccCEE------CCcccccccceEEEEccCCCCCccCCceEEEeCCHHHHHHHH
Confidence 349999999999999999999997 3222 2245678899999987655322 236777775 6654332
Q ss_pred C---Cc----------------------------ccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 013235 347 R---RN----------------------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALK 395 (447)
Q Consensus 347 ~---~~----------------------------~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~ 395 (447)
. .. .+.++..+++.++++++.|+.++ +..++.+++.+++.+.|+++
T Consensus 213 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~~- 289 (390)
T 3b8x_A 213 CIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLP--RFISVRRKNAEYFLDKFKDH- 289 (390)
T ss_dssp HHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCC-
Confidence 1 11 01233478999999999887764 46777788888888877653
Q ss_pred HhcCCeeeEee---cc--eeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235 396 DKYGIIGDVRG---RG--FLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ 446 (447)
Q Consensus 396 ~~~~~i~~vrg---~G--l~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~ 446 (447)
+.+ .+.+ .. .++.+.+..+.. ....++.+.|.++||.++..
T Consensus 290 ---~~~-~~~~~~~~~~~~~~~i~~~~~~~------~~~~~l~~~L~~~gI~v~~~ 335 (390)
T 3b8x_A 290 ---PYL-DVQQETGESSWFGFSFIIKKDSG------VIRKQLVENLNSAGIECRPI 335 (390)
T ss_dssp ---SSE-EECCCCSBCCCCEEEEEECTTSC------CCHHHHHHHHHHTTBCCBCS
T ss_pred ---CCc-ccCCCCCCcccEEEEEEecCcCc------ccHHHHHHHHHHCCCCeeee
Confidence 212 1111 22 234455531100 01457888999999998763
No 183
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.1e-18 Score=179.15 Aligned_cols=292 Identities=13% Similarity=0.073 Sum_probs=178.8
Q ss_pred CCCHHHHHHHHHHHHhccccccc----cc--chHHHHHHHHHHHhCCCC--CceEEEcCCHHHHHHHHHHHHHhhc----
Q 013235 115 HCHPYVVDSIVNQIKRIQHSTVL----YL--NHAIADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYT---- 182 (447)
Q Consensus 115 h~~p~v~~A~~~~l~~~~~~~~~----~~--~~~~~elae~L~~~~~~~--~~~v~~~~sGseA~e~Aik~ar~~t---- 182 (447)
|+++.+.+++.+++....+.+.. ++ .....++++++++.++.+ .+.+++++||++|+..+++.++.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~ 154 (497)
T 3mc6_A 75 HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHR 154 (497)
T ss_dssp CCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence 45689999999998875432221 11 233456777788887654 5679999999999999999987642
Q ss_pred C--CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEE
Q 013235 183 G--CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLS 260 (447)
Q Consensus 183 ~--~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~ 260 (447)
| ++.|++..++|.+ ...+....+. .+..++... ..+..| .++|++.+. +++++|++
T Consensus 155 g~~~~~Vi~~~~~h~~-~~~~~~~~G~----------~~~~v~~~~---~~~~~d----~~~l~~~i~----~~~~~v~~ 212 (497)
T 3mc6_A 155 GITEPEIIAPVTAHAG-FDKAAYYFGM----------KLRHVELDP---TTYQVD----LGKVKKFIN----KNTVLLVG 212 (497)
T ss_dssp CCSSCEEEEETTSCHH-HHHHHHHSCC----------EEEEECBCT---TTCSBC----TTTTGGGCC----SSEEEEEE
T ss_pred CCCCceEEEeCCccHH-HHHHHHHcCC----------eEEEEecCc---ccCcCC----HHHHHHHHh----hCCEEEEE
Confidence 2 3567777766654 3333332221 233333221 011123 345655553 26789999
Q ss_pred ccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCcccc-----CC-Cc--ccccccCCCCCEEEee--ccccCCc
Q 013235 261 ESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFART-----GS-HF--WGFEAHGVVPDIVTMA--KGIGNGI 330 (447)
Q Consensus 261 Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~-----G~-~~--~~~~~~gv~pDivt~s--K~lg~G~ 330 (447)
+..++.+|.+.+ +++|.++|++||+++|+||+|+|+.+. |. .. +.+...|+ |+++++ |.+.+|.
T Consensus 213 ~~p~nptG~~~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~--d~~~~s~~K~l~~~~ 286 (497)
T 3mc6_A 213 SAPNFPHGIADD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGV--TSISCDTHKYGFAPK 286 (497)
T ss_dssp ETTCTTTCCCCS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTC--CEEEEETTTTTCCCS
T ss_pred ECCCCCCCcCCC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCC--cEEEECchhhcCCCC
Confidence 998888998876 889999999999999999999876543 10 11 33334444 777655 8887888
Q ss_pred cccccccCHHHHHhhcCCc----cc-----ccCCCC--hHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHH
Q 013235 331 PLGAVVTTPEIAEVLTRRN----YF-----NTFGGN--PVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKD 396 (447)
Q Consensus 331 pigav~~~~~i~~~l~~~~----~~-----~T~~~n--p~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~ 396 (447)
++|+++++++.+....... .. .++.+. ....++..++++.+.++ ++.++..++.+++++.|++...
T Consensus 287 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 366 (497)
T 3mc6_A 287 GSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIP 366 (497)
T ss_dssp SCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred CceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999998877665442110 01 111111 22233444555555444 4556677778888887777311
Q ss_pred hcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 397 KYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 397 ~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
.+..+. ...+.++.+.. .. ....++.+.|.++||++..
T Consensus 367 g~~~~~--~~~~~~v~~~~--~~-------~~~~~l~~~L~~~Gi~v~~ 404 (497)
T 3mc6_A 367 DLDIMG--NPRYSVISFSS--KT-------LNIHELSDRLSKKGWHFNA 404 (497)
T ss_dssp TCEECS--CCCSSEEEEEC--TT-------TTHHHHHHHHHTTTCBCEE
T ss_pred CEEEec--CCCeeEEEEeC--CC-------CCHHHHHHHHHhCCEEEec
Confidence 222111 23445554442 11 1246789999999998763
No 184
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.79 E-value=5.6e-18 Score=169.03 Aligned_cols=284 Identities=11% Similarity=0.077 Sum_probs=179.8
Q ss_pred CCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCC----CceEEEcCCHHHHHHHHHHHHH-hhcCCCeEEEE
Q 013235 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGN----LKVVFFTNSGTEANELAIMMAR-LYTGCNDIISL 190 (447)
Q Consensus 116 ~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~----~~~v~~~~sGseA~e~Aik~ar-~~t~~~~ii~~ 190 (447)
.+|+|.+|+.+++.. +.... ......++.+++++.+... .++++|++||++|++.+++.+. ...++++|++.
T Consensus 16 ~~~~v~~a~~~~~~~--~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~ 92 (385)
T 2bkw_A 16 LSGAVQKALDVPSLG--HTSPE-FVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVV 92 (385)
T ss_dssp CCHHHHHTTSCCCCC--TTSHH-HHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEE
T ss_pred chHHHHHHHhccccc--cCCHH-HHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEE
Confidence 467888777654332 11110 1224567778888877542 3689999999999999998763 11355788788
Q ss_pred c-CCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCce
Q 013235 191 R-NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGI 269 (447)
Q Consensus 191 ~-~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~ 269 (447)
+ +.||..........+ ..+..++.+ .. .+..| .++|++.+.. +++++|+++++++++|.
T Consensus 93 ~~~~~~~~~~~~~~~~g----------~~~~~v~~~-~~--~~~~d----~~~l~~~l~~---~~~~~v~~~~~~nptG~ 152 (385)
T 2bkw_A 93 STGTFSDRFADCLRSYG----------AQVDVVRPL-KI--GESVP----LELITEKLSQ---NSYGAVTVTHVDTSTAV 152 (385)
T ss_dssp CSSHHHHHHHHHHHHTT----------CEEEEECCS-ST--TSCCC----HHHHHHHHHH---SCCSEEEEESEETTTTE
T ss_pred cCCcchHHHHHHHHHcC----------CceEEEecC-CC--CCCCC----HHHHHHHHhc---CCCCEEEEEccCCCcCe
Confidence 4 456654222221111 012233321 11 12234 5677777764 25678889999999999
Q ss_pred eeCCCChHHHHHHHHHHh--CCEEEEeccccCccccCCCcccccccCCCCCEEEe--eccccCCccccccccCHHHHH-h
Q 013235 270 IELAPGYLPAVYKSIKKA--GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIPLGAVVTTPEIAE-V 344 (447)
Q Consensus 270 ~~~~~~~l~~l~~l~~~~--g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~pigav~~~~~i~~-~ 344 (447)
+.+ +++|.++|++| |+++|+||+|+ +|.. .+..+.+ .+|++++ +|.++++..+|++++++++++ .
T Consensus 153 ~~~----l~~i~~~~~~~~~~~~li~D~a~~-~~~~---~~~~~~~--~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~ 222 (385)
T 2bkw_A 153 LSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE---EFEFDEW--GVDFALTASQKAIGAPAGLSISLCSSRFMDYA 222 (385)
T ss_dssp ECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS---CCCTTTT--TCSEEEEESSSTTCCCSCEEEEEECHHHHHHH
T ss_pred EcC----HHHHHHHHHhhCCCCEEEEECccc-cCCc---ccccccc--CceEEEecCccccccCCcceEEEEcHHHHHHH
Confidence 886 99999999999 99999999996 4322 1222322 4688865 699886555699999998876 4
Q ss_pred hcC------------------C--cc----cc-cCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHH-HHHH
Q 013235 345 LTR------------------R--NY----FN-TFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERL-TALK 395 (447)
Q Consensus 345 l~~------------------~--~~----~~-T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L-~~l~ 395 (447)
+.. . .+ .. .+..|+.+++++.++|+.+++. ++.++.+++.+++.+.| +++
T Consensus 223 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~- 301 (385)
T 2bkw_A 223 LNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL- 301 (385)
T ss_dssp TCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred HhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 420 0 00 01 1356788888888889887643 34677777778887777 554
Q ss_pred HhcCCeeeEe---ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 396 DKYGIIGDVR---GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 396 ~~~~~i~~vr---g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
.+..+..-. ..+.++.+.+. . ..++.+.|.++||.+.+
T Consensus 302 -g~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~l~~~gi~v~~ 342 (385)
T 2bkw_A 302 -QLTSVSRYPSNMSAHGLTAVYVA--------D---PPDVIAFLKSHGVVIAG 342 (385)
T ss_dssp -CCEESSCSSSTTBCSSCEEEECS--------C---HHHHHHHHHHTTEECBC
T ss_pred -CceecccCcccccCCceEEEecC--------C---HHHHHHHHHHCCeEEeC
Confidence 221111000 24778888762 1 35688889999999875
No 185
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.79 E-value=2.9e-18 Score=170.70 Aligned_cols=277 Identities=16% Similarity=0.069 Sum_probs=175.1
Q ss_pred CCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHh-hcCCCeEEEEcCC
Q 013235 115 HCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL-YTGCNDIISLRNA 193 (447)
Q Consensus 115 h~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~-~t~~~~ii~~~~~ 193 (447)
..+|++.+|+.++++.... ++.+...+++++|+++++. +++++++||++|++.+++.++. ..++++|++..++
T Consensus 10 ~~~~~v~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~ 83 (375)
T 2fnu_A 10 CLDKEDKKAVLEVLNSKQL----TQGKRSLLFEEALCEFLGV--KHALVFNSATSALLTLYRNFSEFSADRNEIITTPIS 83 (375)
T ss_dssp CCCHHHHHHHHHHHTSSCC----SSSHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSS
T ss_pred CCCHHHHHHHHHHHHcCcc----cCChHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCc
Confidence 3579999999999876421 2456788999999999854 4899999999999999997742 2355789999999
Q ss_pred cccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCC
Q 013235 194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA 273 (447)
Q Consensus 194 yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~ 273 (447)
||+........ |...+..|....+ ..| .++|++.+. + ++.+|++... +|.+.+
T Consensus 84 ~~~~~~~~~~~-------------g~~~~~~~~~~~~--~~d----~~~l~~~i~---~-~~~~v~~~~~---tG~~~~- 136 (375)
T 2fnu_A 84 FVATANMLLES-------------GYTPVFAGIKNDG--NID----ELALEKLIN---E-RTKAIVSVDY---AGKSVE- 136 (375)
T ss_dssp CTHHHHHHHHT-------------TCEEEECCBCTTS--SBC----GGGSGGGCC---T-TEEEEEEECG---GGCCCC-
T ss_pred cHhHHHHHHHC-------------CCEEEEeccCCCC--CCC----HHHHHhhcC---c-CceEEEEeCC---cCCccC-
Confidence 99876544322 2222222211111 123 344554443 2 4566544433 677665
Q ss_pred CChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEE--Eee--ccccCCcccccccc-C-HHHHHhhcC
Q 013235 274 PGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMA--KGIGNGIPLGAVVT-T-PEIAEVLTR 347 (447)
Q Consensus 274 ~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~s--K~lg~G~pigav~~-~-~~i~~~l~~ 347 (447)
+++|.++|++||+++|+||+|+. |... .....+..+|++ +++ |.++.| +|++++ + +++++.+..
T Consensus 137 ---l~~i~~l~~~~~~~li~D~a~~~-~~~~----~~~~~~~~~~i~~~s~s~~K~~~~g--~g~~~~~~~~~~~~~~~~ 206 (375)
T 2fnu_A 137 ---VESVQKLCKKHSLSFLSDSSHAL-GSEY----QNKKVGGFALASVFSFHAIKPITTA--EGGAVVTNDSELHEKMKL 206 (375)
T ss_dssp ---HHHHHHHHHHHTCEEEEECTTCT-TCEE----TTEETTSSSSEEEEECCTTSSSCCS--SCEEEEESCHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCEEEEECcccc-CCeE----CCeeccccCCeEEEeCCCCCCcccc--CceEEEeCCHHHHHHHHH
Confidence 89999999999999999999973 3221 112233334665 677 999664 688777 3 777665543
Q ss_pred Cc----------------ccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCee---eEeecc
Q 013235 348 RN----------------YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIG---DVRGRG 408 (447)
Q Consensus 348 ~~----------------~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~---~vrg~G 408 (447)
.. ...+++.+++.+++++..++.+ +++.++.+++.+++.+.|+++. .+.... ..++.+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~ 283 (375)
T 2fnu_A 207 FRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKDNP-YFTPLHPLLKDKSSN 283 (375)
T ss_dssp HTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTCS-SEEESGGGCSSCCCC
T ss_pred HHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC-CccccCCCCCCCcce
Confidence 11 1123456788887777666544 3466777777888877776641 111111 012234
Q ss_pred eeEEEEEeeCCCCCCCCHH-HHHHHHHHHHhCCceee
Q 013235 409 FLLGVEFVTDRQLKTPAKA-ETLYIMDKMKGICALFF 444 (447)
Q Consensus 409 l~~giel~~~~~~~~p~~~-~~~~~~~~l~~~Gvlv~ 444 (447)
.++.+.+.... . ...++.+.|.++||.++
T Consensus 284 ~~~~~~~~~~~-------~~~~~~l~~~L~~~gi~v~ 313 (375)
T 2fnu_A 284 HLYPILMHQKF-------FTCKKLILESLHKRGILAQ 313 (375)
T ss_dssp SCEEEEECGGG-------GGGHHHHHHHHHHTTEECB
T ss_pred EEEEEEeCccc-------cchHHHHHHHHHHCCCCcc
Confidence 55567763210 0 24678889999999987
No 186
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.77 E-value=9.9e-18 Score=174.55 Aligned_cols=276 Identities=16% Similarity=0.134 Sum_probs=169.0
Q ss_pred CCHHHHHHHHHHHHhccc-cccccc-chHHHHHHHHHHHhC------CCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeE
Q 013235 116 CHPYVVDSIVNQIKRIQH-STVLYL-NHAIADFAEALASKM------PGNLKVVFFTNSGTEANELAIMMARLYTGCNDI 187 (447)
Q Consensus 116 ~~p~v~~A~~~~l~~~~~-~~~~~~-~~~~~elae~L~~~~------~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~i 187 (447)
.++++++++.+++..... ....|. .....++.+.+++++ +.+.+.|++++||++|+..+++.... ..++.|
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~V 185 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIR-NEKDGI 185 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCC-STTEEE
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcC-CCCCEE
Confidence 467788888888876421 222333 222344444444443 24567899999999999999986531 256789
Q ss_pred EEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCCeEEEEEccccC
Q 013235 188 ISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQG 265 (447)
Q Consensus 188 i~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~aavi~Epi~~ 265 (447)
++.+++|++........ |...+.+|......|+.| +++|++.+... ...++.+|++...++
T Consensus 186 lv~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~d----~~~l~~~l~~~~~~~~~~k~ivl~~p~N 248 (500)
T 3tcm_A 186 LVPIPQYPLYSASIALH-------------GGALVPYYLNESTGWGLE----TSDVKKQLEDARSRGINVRALVVINPGN 248 (500)
T ss_dssp EEEESCCTHHHHHHHHT-------------TCEEEEEECBTTTTSBCC----HHHHHHHHHHHHHTTCEEEEEEEESSCT
T ss_pred EEeCCCcHhHHHHHHHc-------------CCEEEEEecccccCCCCC----HHHHHHHHHHHHhcCCCceEEEEECCCC
Confidence 99999998766544332 222233322222335556 55666666531 111454544444466
Q ss_pred CCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC-Ccccc----cccCC-C--CC-EE--Eeeccc-c-CCccc
Q 013235 266 VGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGF----EAHGV-V--PD-IV--TMAKGI-G-NGIPL 332 (447)
Q Consensus 266 ~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~-~~~~~----~~~gv-~--pD-iv--t~sK~l-g-~G~pi 332 (447)
++|.+. +.+.+++|.++|++||+++|+||+|.++...+. .+..+ ..++. . ++ ++ +|||++ | .|+++
T Consensus 249 PtG~~~-s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~ 327 (500)
T 3tcm_A 249 PTGQVL-AEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRG 327 (500)
T ss_dssp TTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCC
T ss_pred CCcccC-CHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccce
Confidence 777665 677899999999999999999999998765431 22222 12222 1 22 33 789999 5 59999
Q ss_pred ccccc---CHHHHHhhcCCcccccCCCChHHHHHHHHHHH-----------HHh-hhhHHHHHHHHHHHHHHHHHHHHHh
Q 013235 333 GAVVT---TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK-----------VIQ-KDKLQNNAHVVGSYLKERLTALKDK 397 (447)
Q Consensus 333 gav~~---~~~i~~~l~~~~~~~T~~~np~a~aaala~L~-----------~i~-~~~l~~~~~~~g~~l~~~L~~l~~~ 397 (447)
||+++ ++++++.+.... ..+++.|+.+++++..+|+ ..+ .+.+.++++++.+++.+.|+++
T Consensus 328 G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--- 403 (500)
T 3tcm_A 328 GYFEITGFSAPVREQIYKIA-SVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKL--- 403 (500)
T ss_dssp EEEEEESCCTTHHHHHHHHH-HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred EEEEEeCCCHHHHHHHHHHH-hcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 99998 888888776422 2456678888888777774 221 1344556666666666666553
Q ss_pred cCCeeeEeec-ceeEEEEE
Q 013235 398 YGIIGDVRGR-GFLLGVEF 415 (447)
Q Consensus 398 ~~~i~~vrg~-Gl~~giel 415 (447)
+.+..+... |+++.+.+
T Consensus 404 -~g~~~~~~~g~~~~~~~~ 421 (500)
T 3tcm_A 404 -EGITCNEAEGAMYVFPQI 421 (500)
T ss_dssp -TTEECCCCCBTTEECCEE
T ss_pred -CCcEEecCCeEEEEeeee
Confidence 333333333 45555444
No 187
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.77 E-value=6.5e-18 Score=166.59 Aligned_cols=298 Identities=16% Similarity=0.147 Sum_probs=182.1
Q ss_pred CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHH
Q 013235 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMA 178 (447)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~a 178 (447)
.++|||.++.... .+|++.+++.+.... ....++++...+|+++|+++++. +.+++++||++|+..+++..
T Consensus 3 ~~~i~~~~~~~~~----p~~~~~~a~~~~~~~---~~~y~~~~~~~~l~~~la~~~g~--~~~~~~~~gt~a~~~~~~~~ 73 (347)
T 1jg8_A 3 HMMIDLRSDTVTK----PTEEMRKAMAQAEVG---DDVYGEDPTINELERLAAETFGK--EAALFVPSGTMGNQVSIMAH 73 (347)
T ss_dssp --CEECSCGGGCC----CCHHHHHHHHTCCCC---CGGGTCCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHH
T ss_pred ceEEEeccccCCC----CCHHHHHHHhcCCCC---CcccCCChHHHHHHHHHHHHhCC--ceEEEecCcHHHHHHHHHHh
Confidence 3578998877632 668888887654211 11223567788999999999853 56789999999999998764
Q ss_pred HhhcCCCeEEEEcCCcccCch-h-hhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC--CCC
Q 013235 179 RLYTGCNDIISLRNAYHGNAA-G-TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT--SGH 254 (447)
Q Consensus 179 r~~t~~~~ii~~~~~yHG~~~-~-~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~--~~~ 254 (447)
. ..+++|++.+++|..... . ..... |...+...+. .+..| .+++++.+.... ..+
T Consensus 74 ~--~~gd~Vl~~~~~~~~~~~~~~~~~~~------------g~~~~~v~~~---~~~~d----~~~l~~~i~~~~~~~~~ 132 (347)
T 1jg8_A 74 T--QRGDEVILEADSHIFWYEVGAMAVLS------------GVMPHPVPGK---NGAMD----PDDVRKAIRPRNIHFPR 132 (347)
T ss_dssp C--CTTCEEEEETTCHHHHSSTTHHHHHT------------CCEEEEECEE---TTEEC----HHHHHHHSCCSCTTSCC
T ss_pred c--CCCCEEEEcCcchhhhccccchhhcc------------CeEEEEecCC---CCccC----HHHHHHHhccccccccC
Confidence 3 256788888887643221 1 11111 2222221110 01113 567777765311 125
Q ss_pred eEEEEEccccCCC-ceeeCCCChHHHHHHHHHHhCCEEEEeccccCcc---ccCCCcccccccCCCCCE--EEeeccccC
Q 013235 255 VAGFLSESIQGVG-GIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA---RTGSHFWGFEAHGVVPDI--VTMAKGIGN 328 (447)
Q Consensus 255 ~aavi~Epi~~~g-G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfg---r~G~~~~~~~~~gv~pDi--vt~sK~lg~ 328 (447)
+++|++++.++++ |.+. |.+.+++|.++|++||+++|+||+|. ++ ..|.. ........|. ++++|.+++
T Consensus 133 ~~~v~~~~~~npt~G~~~-~~~~l~~i~~~a~~~~~~li~D~a~~-~~~~~~~~~~---~~~~~~~~d~~~~s~sK~l~~ 207 (347)
T 1jg8_A 133 TSLIAIENTHNRSGGRVV-PLENIKEICTIAKEHGINVHIDGARI-FNASIASGVP---VKEYAGYADSVMFCLSKGLCA 207 (347)
T ss_dssp EEEEEEESSBTTTTSBCC-CHHHHHHHHHHHHHHTCEEEEEETTH-HHHHHHHCCC---HHHHHHTCSEEEEESSSTTCC
T ss_pred ceEEEEeccccccCCccC-cHHHHHHHHHHHHHCCCEEEeehhhh-hcchhhcCCC---hHHhcccccEEEEecccccCC
Confidence 7889999888887 7654 67789999999999999999999874 32 12211 1111112344 368999975
Q ss_pred Cccccc-cccCHHHHHhhcCC--cccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe
Q 013235 329 GIPLGA-VVTTPEIAEVLTRR--NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR 405 (447)
Q Consensus 329 G~piga-v~~~~~i~~~l~~~--~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr 405 (447)
|+|+ +++++++++.+... .+.+++..+++.++++..+|+...+ .+ ++..+..+++.+.|+++ .+... ..+
T Consensus 208 --~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-~~~~~~~~~l~~~L~~~--~~~~~-~~~ 280 (347)
T 1jg8_A 208 --PVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVD-RL-KEDHENARFLALKLKEI--GYSVN-PED 280 (347)
T ss_dssp --SSCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSST-TH-HHHHHHHHHHHHHHHHH--TCBCC-GGG
T ss_pred --CceEEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHhc--Cceec-cCC
Confidence 5785 56788887765431 1223344456777777778875322 23 33445667888888765 23211 113
Q ss_pred ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 406 GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 406 g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
..|.++++++.... ....++.+.|+++||++.+
T Consensus 281 ~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~v~~ 313 (347)
T 1jg8_A 281 VKTNMVILRTDNLK-------VNAHGFIEALRNSGVLANA 313 (347)
T ss_dssp CCSSEEEEECTTSS-------SCHHHHHHHHHHHTEECEE
T ss_pred CcceEEEEEccccc-------CCHHHHHHHHHHCCCEEec
Confidence 45677777763100 0145788899999998863
No 188
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.77 E-value=1.8e-17 Score=169.37 Aligned_cols=291 Identities=11% Similarity=0.025 Sum_probs=185.8
Q ss_pred CCHHHHHHHHHHHHhc---cc-ccccccchHHHHHHHHHHHhCCCCCceEEE---cCCHHHHHHHHHHHHHhhcCCCeEE
Q 013235 116 CHPYVVDSIVNQIKRI---QH-STVLYLNHAIADFAEALASKMPGNLKVVFF---TNSGTEANELAIMMARLYTGCNDII 188 (447)
Q Consensus 116 ~~p~v~~A~~~~l~~~---~~-~~~~~~~~~~~elae~L~~~~~~~~~~v~~---~~sGseA~e~Aik~ar~~t~~~~ii 188 (447)
++++|.+|+.++.... .. ....|......+++++|++.++.. ...+ ++||++|++.+++... ..++.|+
T Consensus 36 n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~~--~~~~~i~~~sGt~Ai~~al~al~--~~Gd~Vl 111 (431)
T 3ht4_A 36 NQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAE--AGLVRPQIISGTHAISTALFGIL--RPGDELL 111 (431)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTCS--EECCBTTSCSHHHHHHHHHHTTC--CTTCEEE
T ss_pred HHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCCC--cccccceeeCHHHHHHHHHHHhC--CCCCEEE
Confidence 5678888887753221 11 122456778889999999998543 2333 5699999999997442 3567888
Q ss_pred EEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEcc-ccCCC
Q 013235 189 SLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES-IQGVG 267 (447)
Q Consensus 189 ~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Ep-i~~~g 267 (447)
+.++..|+.+...+.+++. ++......|+.....|... .+..| .++|++.+. .++++|++|+ .++.+
T Consensus 112 ~~~~~~y~~~~~~~~l~g~--~~~~~~~~G~~~~~v~~~~--~~~~d----~e~l~~~l~----~~tk~V~i~~sp~np~ 179 (431)
T 3ht4_A 112 YITGKPYDTLEEIVGVRGK--GVGSFKEYNIGYNAVPLTE--GGLVD----FEAVAAAIH----SNTKMIGIQRSKGYAT 179 (431)
T ss_dssp ECSSSCCTTHHHHTTSSSC--SSSCSGGGTCEEEECCBCT--TSSBC----HHHHHHHCC----TTEEEEEEECSCTTSS
T ss_pred EeCCCCchhHHHHHhhccc--ccchHHHcCCEEEEeCCCC--CCCcC----HHHHHhhcC----CCCeEEEEECCCCCCC
Confidence 8885666777666655543 2211222344444333221 12234 567777664 3688999995 44444
Q ss_pred ceeeCCCChHHHHHHHHHH--hCCEEEEeccccCccccCCCcccccccCCCCCEE--EeeccccCC--ccccccccCHHH
Q 013235 268 GIIELAPGYLPAVYKSIKK--AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNG--IPLGAVVTTPEI 341 (447)
Q Consensus 268 G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G--~pigav~~~~~i 341 (447)
|.. .+...+++|.++|++ +|+++|+||+|..+...+ ... .++ .|++ +++|.+++| .+.|++++++++
T Consensus 180 ~~~-~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~-~~~---~~g--~Di~~~S~sK~lgg~~~~~GG~v~~~~~l 252 (431)
T 3ht4_A 180 RPS-FTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQ-EPC---HVG--ADLMAGSLIKNPGGGIVKTGGYIVGKEQY 252 (431)
T ss_dssp SCC-CCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSC-CGG---GTT--CSEEEEETTSGGGTTTCSSCEEEEECHHH
T ss_pred CCc-CCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCC-Ccc---ccC--CeEEEcCccccCCCCCCCceEEEEecHHH
Confidence 443 356669999999999 999999999998876544 221 224 4666 588999975 567889999999
Q ss_pred HHhhcCC----cccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCeeeEeecceeEEEEEe
Q 013235 342 AEVLTRR----NYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDK-YGIIGDVRGRGFLLGVEFV 416 (447)
Q Consensus 342 ~~~l~~~----~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~-~~~i~~vrg~Gl~~giel~ 416 (447)
++.+... ....+.+.++..+.+++..|+.+ +...++..+...++.+.|+++--+ ++. .+.++.+++++|++.
T Consensus 253 i~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g~~v~p~-~~~~~~~li~~i~l~ 329 (431)
T 3ht4_A 253 VEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLGMNTSPA-WNAPRTDLIQSVQFD 329 (431)
T ss_dssp HHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCCEESC-TTSCCSSSCCEEECC
T ss_pred HHHHHHHhccCCcccccCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCcCEecCC-CCCCCccEEEEEEeC
Confidence 8877541 12223333233244455556544 346677778888888888876321 111 234677889999984
Q ss_pred eCCCCCCCCHHHHHHHHHHHHhCC
Q 013235 417 TDRQLKTPAKAETLYIMDKMKGIC 440 (447)
Q Consensus 417 ~~~~~~~p~~~~~~~~~~~l~~~G 440 (447)
+.+.+.++++.|.+..
T Consensus 330 --------~~~~~~~~~~~l~~~~ 345 (431)
T 3ht4_A 330 --------DKDRMIAFCQAIQYAS 345 (431)
T ss_dssp --------CHHHHHHHHHHHHHTS
T ss_pred --------CHHHHHHHHHHHHhcC
Confidence 2345678888888764
No 189
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.77 E-value=7.1e-18 Score=169.11 Aligned_cols=294 Identities=12% Similarity=0.018 Sum_probs=173.4
Q ss_pred CC-eEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCC-CCceEEEcCCHHHHHHHHH
Q 013235 98 GR-RYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAI 175 (447)
Q Consensus 98 G~-~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~-~~~~v~~~~sGseA~e~Ai 175 (447)
|. .++|+..+.+.. -.+|++.+|+. . +. .+.....++++.+++.++. +.+.+++++||++|++.++
T Consensus 26 g~~~v~~~~~~~~~~---~~~~~v~~a~~----~--~~---~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~ 93 (374)
T 2aeu_A 26 GRDALYDLSGLSGGF---LIDEKDKALLN----T--YI---GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATI 93 (374)
T ss_dssp CGGGCEECSSCCCCC---CCCHHHHHHHT----S--TT---HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHH
T ss_pred CccceeeecccCCCC---CCCHHHHHHHH----H--hc---CchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHH
Confidence 44 455876544322 24677877774 1 11 1233335667777666643 1267899999999999999
Q ss_pred HHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCe
Q 013235 176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHV 255 (447)
Q Consensus 176 k~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~ 255 (447)
+.. ++++|++.+++||+.......+. ..|...+.. .| .+++++. . +++
T Consensus 94 ~~~----~gd~Vl~~~~~y~~~~~~~~~~~----------~~g~~~~~v---------~d----~~~l~~~-~----~~~ 141 (374)
T 2aeu_A 94 LAL----KPKKVIHYLPELPGHPSIERSCK----------IVNAKYFES---------DK----VGEILNK-I----DKD 141 (374)
T ss_dssp HHH----CCSEEEEECSSSSCCTHHHHHHH----------HTTCEEEEE---------SC----HHHHHTT-C----CTT
T ss_pred HhC----CCCEEEEecCCCCccHHHHHHHH----------HcCcEEEEe---------CC----HHHHHhc-C----CCc
Confidence 855 56899999999998543111110 012222221 12 4566554 2 256
Q ss_pred EE-EEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE--eeccccCCccc
Q 013235 256 AG-FLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPL 332 (447)
Q Consensus 256 aa-vi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pi 332 (447)
++ |++++.++++|. +...+++|.++|++||+++|+||++..+. .|. ..........+|+++ ++|.++ |+++
T Consensus 142 ~~~v~~~~p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~~-~~~-~~~~~~~~~~~di~~~S~sK~l~-g~~~ 215 (374)
T 2aeu_A 142 TLVIITGSTMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGARV-RLL-FNQPPALKLGADLVVTSTDKLME-GPRG 215 (374)
T ss_dssp EEEEEECBCTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHHH-HHH-TTCCCHHHHTCSEEEEETTSSSS-SCSC
T ss_pred cEEEEEccCCCCCCC---CcccHHHHHHHHHHcCCEEEEECCccccc-ccc-cccCCccccCCcEEEecCccccc-Ccce
Confidence 78 889888888884 33459999999999999999999886442 110 000001123468885 889987 4799
Q ss_pred cccccCHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHH----HHHHHHHHHhc----CCeeeE
Q 013235 333 GAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYL----KERLTALKDKY----GIIGDV 404 (447)
Q Consensus 333 gav~~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l----~~~L~~l~~~~----~~i~~v 404 (447)
|++++++++++.+.........+.+++.++++.++|+.+..+ ..++..+..+.+ ++.|.+..... +.....
T Consensus 216 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~ 294 (374)
T 2aeu_A 216 GLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLE-RIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYER 294 (374)
T ss_dssp EEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEE
T ss_pred EEEEECHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceee
Confidence 999999999987764322223356899999999999876432 233333444444 45554433222 111234
Q ss_pred eecceeEEEEEeeCCCCCCCCHHHHHHHHHHH-HhCCceeecc
Q 013235 405 RGRGFLLGVEFVTDRQLKTPAKAETLYIMDKM-KGICALFFSQ 446 (447)
Q Consensus 405 rg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l-~~~Gvlv~~~ 446 (447)
++.|.++... +.... .......+++..+ .++||++.+.
T Consensus 295 ~~~g~~~~~~--~~~~~--~~~~~~~~~~~~ll~~~gV~v~~g 333 (374)
T 2aeu_A 295 TPTGFVIKRV--YKDDT--INIKKLIEIGFNLLKNYGIITITV 333 (374)
T ss_dssp CSSEEEEEEE--ESSHH--HHHHHHHHHHHHHHHHHCEECSTT
T ss_pred CCceEEEEee--ccccc--ccccchHHHHHHHHHhCCEEEecC
Confidence 5666665442 11000 0000112355444 4689998753
No 190
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.75 E-value=1.8e-17 Score=167.97 Aligned_cols=252 Identities=14% Similarity=0.042 Sum_probs=164.8
Q ss_pred cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchh---hhhccCCCCcccccc
Q 013235 139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG---TMGATAQSNWKFNVV 215 (447)
Q Consensus 139 ~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~---~~~~t~~~~~~~~~~ 215 (447)
.++...+|+++|+++++. +.+++++||++|+..+++... .+++.|++.++.|++.... ....
T Consensus 60 ~~~~~~~l~~~ia~~~g~--~~~i~~~~g~~ai~~~~~~l~--~~gd~Vl~~~~~y~~~~~~~~~~~~~----------- 124 (404)
T 1e5e_A 60 GNPTVSNLEGKIAFLEKT--EACVATSSGMGAIAATVLTIL--KAGDHLISDECLYGCTHALFEHALTK----------- 124 (404)
T ss_dssp CCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEEESCCCHHHHHHHHTHHHH-----------
T ss_pred cChHHHHHHHHHHHHhCC--CcEEEeCChHHHHHHHHHHHh--CCCCEEEEeCCCchhHHHHHHHHHHH-----------
Confidence 457778999999999854 467889999999999998542 3567899999999875431 1111
Q ss_pred CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHH-hCCEEEEe
Q 013235 216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK-AGGLCIAD 294 (447)
Q Consensus 216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~-~g~llI~D 294 (447)
.|+..+..|. +| .+++++.+. +++++|+++..++++|.+.+ +++|.++|++ +|+++|+|
T Consensus 125 -~g~~~~~v~~-------~d----~~~l~~~i~----~~t~~v~l~~p~NptG~v~~----l~~i~~la~~~~~~~li~D 184 (404)
T 1e5e_A 125 -FGIQVDFINT-------AI----PGEVKKHMK----PNTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIAD 184 (404)
T ss_dssp -TTCEEEEECT-------TS----TTHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEE
T ss_pred -cCCEEEEECC-------CC----HHHHHHhcC----CCCcEEEEECCCCCCCcccC----HHHHHHHHHhhcCCEEEEE
Confidence 1333332221 12 356666654 26789999999999998875 9999999999 99999999
Q ss_pred ccccCccccCCCcccccccCCCCCEE--EeeccccC-Cccc-cccccCHHHHH-hhcCCcccc-cCCCChHHHHHHHHHH
Q 013235 295 EVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPL-GAVVTTPEIAE-VLTRRNYFN-TFGGNPVCTAAGHAVL 368 (447)
Q Consensus 295 Ev~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pi-gav~~~~~i~~-~l~~~~~~~-T~~~np~a~aaala~L 368 (447)
|+|+.+... .. .+ ++ .|++ +++|.+++ |.++ |++++++++++ .+....... +.+.+|++++++.++|
T Consensus 185 e~~~~~~~~--~~--~~-~~--~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l 257 (404)
T 1e5e_A 185 NTFCSPMIT--NP--VD-FG--VDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGL 257 (404)
T ss_dssp CTTTCTTTC--CG--GG-GT--CSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHH
T ss_pred CCCchhhhC--Cc--cc-cC--CEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhH
Confidence 999876432 11 12 33 5766 58899985 7898 99999999887 776543333 4567899999888888
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHH----HhcCCee----------eEeecceeEEEEEeeCCCCCCCCHHHHHHHHH
Q 013235 369 KVIQKDKLQNNAHVVGSYLKERLTALK----DKYGIIG----------DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMD 434 (447)
Q Consensus 369 ~~i~~~~l~~~~~~~g~~l~~~L~~l~----~~~~~i~----------~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~ 434 (447)
+.+. ...++..+..+.+.+.|++.. .-++.+. ..+|.|.|+.+++.+ . ...+.+
T Consensus 258 ~~~~--~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~--------~--~~~~~~ 325 (404)
T 1e5e_A 258 STLN--IRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS--------G--FEGAKK 325 (404)
T ss_dssp TTHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT--------H--HHHHHH
T ss_pred hHHH--HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC--------C--HHHHHH
Confidence 6432 122333333344444333321 0011110 134668999998731 1 123444
Q ss_pred HHHhCCceee
Q 013235 435 KMKGICALFF 444 (447)
Q Consensus 435 ~l~~~Gvlv~ 444 (447)
.+.+.||++.
T Consensus 326 ~l~~~~i~~~ 335 (404)
T 1e5e_A 326 LLDNLKLITL 335 (404)
T ss_dssp HHHTCSSSEE
T ss_pred HHHhCCCcee
Confidence 5566787543
No 191
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.75 E-value=9.9e-18 Score=164.43 Aligned_cols=249 Identities=16% Similarity=0.056 Sum_probs=162.5
Q ss_pred HHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecC
Q 013235 145 DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALN 224 (447)
Q Consensus 145 elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~ 224 (447)
+++++|++.++.+ ..++++||++|++.+++... .++++|++..++||+.......+.. ..|+.....
T Consensus 2 ~l~~~la~~~g~~--~~i~~~sG~~a~~~~~~~~~--~~g~~v~~~~~~~~~~~~~~~~~~~---------~~g~~~~~~ 68 (331)
T 1pff_A 2 ALEGKIAKLEHAE--ACAATASGMGAIAASVWTFL--KAGDHLISDDCLYGCTHALFEHQLR---------KFGVEVDFI 68 (331)
T ss_dssp HHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--CTTCEEEEESCCCHHHHHHHHTHHH---------HTTCEEEEE
T ss_pred hHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc--CCCCEEEEcCCCcchHHHHHHHHHH---------hcCCEEEEe
Confidence 5778888888653 56678889999999998652 3567899999999986544322100 012222221
Q ss_pred CCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHH-hCCEEEEeccccCcccc
Q 013235 225 PDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK-AGGLCIADEVQAGFART 303 (447)
Q Consensus 225 p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~-~g~llI~DEv~tGfgr~ 303 (447)
|. .| .+++++.+. +++++|+++++++++|.+.+ +++|.++|++ +|+++|+||+|+.+ ..
T Consensus 69 ~~-------~d----~~~l~~~i~----~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~~-~~ 128 (331)
T 1pff_A 69 DM-------AV----PGNIEKHLK----PNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASP-IL 128 (331)
T ss_dssp CT-------TS----TTHHHHTCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHH-HH
T ss_pred CC-------CC----HHHHHHhhc----CCCeEEEEECCCCCcCcccC----HHHHHHHHhhhcCCEEEEECCCccc-cc
Confidence 11 12 345665553 36789999999999999886 9999999999 99999999999732 22
Q ss_pred CCCcccccccCCCCCEE--EeeccccC-Ccc-ccccccCH-HHHHhhcCCccc-ccCCCChHHHHHHHHHHHHHhh--hh
Q 013235 304 GSHFWGFEAHGVVPDIV--TMAKGIGN-GIP-LGAVVTTP-EIAEVLTRRNYF-NTFGGNPVCTAAGHAVLKVIQK--DK 375 (447)
Q Consensus 304 G~~~~~~~~~gv~pDiv--t~sK~lg~-G~p-igav~~~~-~i~~~l~~~~~~-~T~~~np~a~aaala~L~~i~~--~~ 375 (447)
. . .. .++ +|++ +++|.+++ |.| +|++++++ ++++.+...... .+...|++++.++.+.++.+.. +.
T Consensus 129 ~-~--~~-~~~--~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 202 (331)
T 1pff_A 129 T-N--PL-DLG--VDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKR 202 (331)
T ss_dssp C-C--GG-GGT--CSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-C--hh-hcC--CcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHHHHHH
Confidence 1 1 11 234 5666 58899985 678 78999998 998888765555 5667889998888788875532 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCCee----------eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235 376 LQNNAHVVGSYLKERLTALKDK-YGIIG----------DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF 444 (447)
Q Consensus 376 l~~~~~~~g~~l~~~L~~l~~~-~~~i~----------~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~ 444 (447)
+.+++..+.+++.+. ..+.+. ++.+. ..++.|.++.+++. + ...+.+.|.++||+++
T Consensus 203 ~~~~~~~~~~~l~~~-~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~l~~~gI~~~ 270 (331)
T 1pff_A 203 AAENAQKVAEFLHEH-KAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD-G----------LEKAKKVLDNCHVVSL 270 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS-S----------HHHHHHHHHTCSSSEE
T ss_pred HHHHHHHHHHHHHcC-CCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-C----------HHHHHHHHHhCCCcee
Confidence 344444444444332 010000 01111 12467889998874 1 2456777888999764
No 192
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.75 E-value=1.6e-16 Score=162.77 Aligned_cols=252 Identities=17% Similarity=0.132 Sum_probs=166.0
Q ss_pred cccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccc
Q 013235 133 HSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKF 212 (447)
Q Consensus 133 ~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~ 212 (447)
|...++.++...+++++|+++++.. ..++++||++|+..+++... ..++.||+.++.|++.........
T Consensus 106 ~~y~r~~~~~~~~l~~~lA~l~g~~--~~v~~~sG~~Ai~~al~~l~--~~Gd~Vi~~~~~y~~~~~~~~~~~------- 174 (445)
T 1qgn_A 106 FEYGRYGNPTTVVLEEKISALEGAE--STLLMASGMCASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETIL------- 174 (445)
T ss_dssp CCBGGGCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHS--CSSCEEEEETTSCHHHHHHHHHTG-------
T ss_pred ccccCCCChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHh--CCCCEEEEcCCCchhHHHHHHHHH-------
Confidence 4445567889999999999998653 56778999999999998542 245789999998887433211000
Q ss_pred cccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235 213 NVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (447)
Q Consensus 213 ~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI 292 (447)
...|+.....|. +| .+++++.+.. +.+++|++|++++++|.+.+ +++|.++|++||+++|
T Consensus 175 --~~~G~~v~~v~~-------~d----~~~l~~ai~~---~tv~lV~le~p~NptG~v~d----l~~I~~la~~~g~~li 234 (445)
T 1qgn_A 175 --PKMGITATVIDP-------AD----VGALELALNQ---KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVC 234 (445)
T ss_dssp --GGGTCEEEEECS-------SC----HHHHHHHHHH---SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEE
T ss_pred --HHcCCEEEEeCC-------CC----HHHHHHHhcc---CCCCEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEE
Confidence 011332222221 13 5778887763 23489999999999999886 9999999999999999
Q ss_pred EeccccCccccCCCcccccccCCCCCEEE--eeccccCC--ccccccccCHHHHHhhcCCcccccCCC--ChHHHHHHHH
Q 013235 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGNG--IPLGAVVTTPEIAEVLTRRNYFNTFGG--NPVCTAAGHA 366 (447)
Q Consensus 293 ~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G--~pigav~~~~~i~~~l~~~~~~~T~~~--np~a~aaala 366 (447)
+||+|+.+ .. ....+..+|+++ ++|.++++ +++|++++++++++.+... ..++++ +|+.+..++.
T Consensus 235 vD~a~~~~-~~------~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~--~~~~g~~~~~~~a~~~~~ 305 (445)
T 1qgn_A 235 IDGTFATP-LN------QKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL--HHILGGALNPNAAYLIIR 305 (445)
T ss_dssp EECTTTCT-TT------CCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH--HHHHCCCCCHHHHHHHHH
T ss_pred EECCCccc-cc------CCccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHH--HHHhCCCCCHHHHHHHHH
Confidence 99999632 11 122345679987 77999863 4799999999998877532 233444 6777777766
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeee------------------EeecceeEEEEEeeCCCCCCCCHHH
Q 013235 367 VLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD------------------VRGRGFLLGVEFVTDRQLKTPAKAE 428 (447)
Q Consensus 367 ~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~------------------vrg~Gl~~giel~~~~~~~~p~~~~ 428 (447)
.|+.+.. ..++..+..+++.+.|++. +.+.. ++|.|.|+.|++..+ ...
T Consensus 306 ~l~~l~~--r~~~~~~~a~~l~~~L~~~----p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~-------~~~ 372 (445)
T 1qgn_A 306 GMKTLHL--RVQQQNSTALRMAEILEAH----PKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD-------LLT 372 (445)
T ss_dssp HGGGHHH--HHHHHHHHHHHHHHHHHTC----TTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC-------HHH
T ss_pred hHHHHHH--HHHHHHHHHHHHHHHHhcC----CCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCC-------HHH
Confidence 6654421 2233334455555555443 33322 246789999998431 123
Q ss_pred HHHHHHHHH
Q 013235 429 TLYIMDKMK 437 (447)
Q Consensus 429 ~~~~~~~l~ 437 (447)
+.++.+.|.
T Consensus 373 ~~~~l~~l~ 381 (445)
T 1qgn_A 373 TAKFVDALK 381 (445)
T ss_dssp HHHHHHHCS
T ss_pred HHHHHHhCC
Confidence 556666654
No 193
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.74 E-value=2.3e-16 Score=161.21 Aligned_cols=292 Identities=16% Similarity=0.122 Sum_probs=177.1
Q ss_pred CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHH
Q 013235 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM 176 (447)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik 176 (447)
+|+.+|.|.... -+|++.+|+.+++.... .++.+...+++++|+++++. +.++|++||++|++.+++
T Consensus 29 ~~~~~i~~~~~~-------~~~~~~~a~~~~~~~~~----~~~~~~~~~l~~~la~~~g~--~~~i~~~sGt~a~~~al~ 95 (437)
T 3bb8_A 29 AGKSVVPPSGKV-------IGTKELQLMVEASLDGW----LTTGRFNDAFEKKLGEYLGV--PYVLTTTSGSSANLLALT 95 (437)
T ss_dssp TTTSCBCSCCCC-------CCHHHHHHHHHHHHHCC----CBSCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHH
T ss_pred CCCccccCCCCC-------CCHHHHHHHHHHHHcCC----cCCChHHHHHHHHHHHHHCC--CcEEEeCCHHHHHHHHHH
Confidence 356666663211 14899999999887643 34567888999999999864 468899999999999998
Q ss_pred HHH------h-hcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHc
Q 013235 177 MAR------L-YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDF 249 (447)
Q Consensus 177 ~ar------~-~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~ 249 (447)
.++ . ..++++|++..++||+........ |...+..|... ..+..| .+++++.+.
T Consensus 96 ~l~~~~~~~~~~~~gd~Vi~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~-~~~~~d----~~~l~~~i~- 156 (437)
T 3bb8_A 96 ALTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQN-------------GLIPVFVDVDI-PTYNVN----ASLIEAAVS- 156 (437)
T ss_dssp HTTCGGGGGGSCCTTCEEEECSSSCHHHHHHHHHT-------------TCEEEECCEET-TTTEEC----GGGHHHHCC-
T ss_pred HhhhcccccccCCCcCEEEECCCCcHHHHHHHHHc-------------CCEEEEEeccC-ccCCcC----HHHHHHhcC-
Confidence 763 1 234578999999998876554332 22222222110 012123 455666553
Q ss_pred cCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCCEEEee----c
Q 013235 250 GTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA----K 324 (447)
Q Consensus 250 ~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pDivt~s----K 324 (447)
+ ++++|++... .|.. ..+++|.++|+++|+++|+||+|+ |....+ +.++..+|+++++ |
T Consensus 157 --~-~~~~v~~~~~---~g~~----~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~------~~~~~~~d~~~~s~~~~k 220 (437)
T 3bb8_A 157 --D-KTKAIMIAHT---LGNL----FDLAEVRRVADKYNLWLIEDCCDALGSTYDG------KMAGTFGDIGTVSFYPAK 220 (437)
T ss_dssp --T-TEEEEEEECG---GGCC----CCHHHHHHHHHHHTCEEEEECTTCTTCEETT------EETTSSSSEEEEECSTTS
T ss_pred --C-CCeEEEEeCC---CCCh----hcHHHHHHHHHHcCCEEEEECccccCceECC------eecccccCEEEEECcCCc
Confidence 2 5666666322 2332 349999999999999999999997 332222 3345557987654 7
Q ss_pred cccCCccccccccCHHHH-Hhhc---CCc------------------------------------ccccCCCChHHHHHH
Q 013235 325 GIGNGIPLGAVVTTPEIA-EVLT---RRN------------------------------------YFNTFGGNPVCTAAG 364 (447)
Q Consensus 325 ~lg~G~pigav~~~~~i~-~~l~---~~~------------------------------------~~~T~~~np~a~aaa 364 (447)
++++ ...|+++++++.+ +.+. ... ....+..++++++++
T Consensus 221 ~l~~-g~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~ 299 (437)
T 3bb8_A 221 HITM-GEGGAVFTQSAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACG 299 (437)
T ss_dssp SSCC-SSCEEEEESCHHHHHHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHH
T ss_pred CCCC-CCeEEEEeCCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHH
Confidence 7754 4578888885543 3211 100 001123358899999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH--hcCCee--eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCC
Q 013235 365 HAVLKVIQKDKLQNNAHVVGSYLKERLTALKD--KYGIIG--DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGIC 440 (447)
Q Consensus 365 la~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~--~~~~i~--~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~G 440 (447)
++.|+.+ ++..++.+++.++++++|+++.. .++... ...+...+ .+.+..+.. ....++.+.|.++|
T Consensus 300 l~~l~~~--~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~l~~~L~~~G 370 (437)
T 3bb8_A 300 LAQLERI--EEFVEKRKANFKYLKDALQSCADFIELPEATENSDPSWFGF-PITLKEDSG------VSRIDLVKFLDEAK 370 (437)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSSE-EEEECGGGS------SCHHHHHHHHHHTT
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHhhccCCccccCCCCCCCceeeEEE-EEEECCcCc------CcHHHHHHHHHHCC
Confidence 9998766 34556667778888887766521 011000 01111111 222321100 01457889999999
Q ss_pred ceeecc
Q 013235 441 ALFFSQ 446 (447)
Q Consensus 441 vlv~~~ 446 (447)
|.++..
T Consensus 371 I~v~~~ 376 (437)
T 3bb8_A 371 VGTRLL 376 (437)
T ss_dssp BCCBCC
T ss_pred Cceecc
Confidence 998754
No 194
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.73 E-value=2.7e-16 Score=163.68 Aligned_cols=276 Identities=12% Similarity=0.058 Sum_probs=165.3
Q ss_pred CCHHHHHHHHHHHHhccc-ccccc-----cchHHHHHHHHHHHhC---CCCCceEEEcCCHHHHHHHHHHHHHhhcC---
Q 013235 116 CHPYVVDSIVNQIKRIQH-STVLY-----LNHAIADFAEALASKM---PGNLKVVFFTNSGTEANELAIMMARLYTG--- 183 (447)
Q Consensus 116 ~~p~v~~A~~~~l~~~~~-~~~~~-----~~~~~~elae~L~~~~---~~~~~~v~~~~sGseA~e~Aik~ar~~t~--- 183 (447)
.+..+.+++.+.++.... ....| ..+...++++.+.+.. +...++|++++++++|+..++++... .+
T Consensus 102 ~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~-~gd~~ 180 (498)
T 3ihj_A 102 FPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVS-GGGKS 180 (498)
T ss_dssp SCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCC-CCGGG
T ss_pred CCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcC-CCCCC
Confidence 356677777777776421 11122 2345556666666553 23567899999999999999985532 11
Q ss_pred CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCC-CeEEEEEcc
Q 013235 184 CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSG-HVAGFLSES 262 (447)
Q Consensus 184 ~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~-~~aavi~Ep 262 (447)
++.|++..++|.......... |...+.++......|+.| +++|++.+.....+ ++.+|++..
T Consensus 181 ~d~Vlv~~p~y~~~~~~~~~~-------------g~~~v~~~~~~~~~~~~d----~~~le~~l~~~~~~~~~k~i~l~n 243 (498)
T 3ihj_A 181 RTGVMIPIPQYPLYSAVISEL-------------DAIQVNYYLDEENCWALN----VNELRRAVQEAKDHCDPKVLCIIN 243 (498)
T ss_dssp SEEEEEEESCCTHHHHHHHHT-------------TCEEEEEECBGGGTTBCC----HHHHHHHHHHHTTTSEEEEEEEES
T ss_pred CCEEEEeCCCchhHHHHHHHc-------------CCEEEEeeccccccCCCC----HHHHHHHHHhhhccCCCeEEEEEC
Confidence 248999999998665443322 222233322222335556 66777777643221 355555555
Q ss_pred ccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC-Cccccccc--CC------CCCEE---Eeeccc-c-C
Q 013235 263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS-HFWGFEAH--GV------VPDIV---TMAKGI-G-N 328 (447)
Q Consensus 263 i~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~-~~~~~~~~--gv------~pDiv---t~sK~l-g-~ 328 (447)
.++++|.+. +.+.+++|.++|++||+++|+||+|..+...+. .+..+... +. ...++ +|||.+ | .
T Consensus 244 p~NPTG~v~-s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~ 322 (498)
T 3ihj_A 244 PGNPTGQVQ-SRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGEC 322 (498)
T ss_dssp SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCS
T ss_pred CCCCCCCcC-CHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCc
Confidence 566777665 677899999999999999999999988765441 22222111 01 11222 689999 4 7
Q ss_pred Cccccccc---cCHHHHHhhcCCcccccCCCChHHHHHHHHHHH-----------HHh-hhhHHHHHHHHHHHHHHHHHH
Q 013235 329 GIPLGAVV---TTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK-----------VIQ-KDKLQNNAHVVGSYLKERLTA 393 (447)
Q Consensus 329 G~pigav~---~~~~i~~~l~~~~~~~T~~~np~a~aaala~L~-----------~i~-~~~l~~~~~~~g~~l~~~L~~ 393 (447)
|+++||++ .++++++.+.... ....+.|+++++++.++++ .++ .+.+.++++++.+++.+.|++
T Consensus 323 G~R~G~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~ 401 (498)
T 3ihj_A 323 GYRGGYMEVINLHPEIKGQLVKLL-SVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQ 401 (498)
T ss_dssp SSCCEEEEEESCCHHHHHHHHHHH-HHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccceEEEEEecCCHHHHHHHHHHH-hccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999998 6899988876432 2344556777766655552 111 123445555556666655554
Q ss_pred HHHhcCCeeeEeec-ceeEEEEE
Q 013235 394 LKDKYGIIGDVRGR-GFLLGVEF 415 (447)
Q Consensus 394 l~~~~~~i~~vrg~-Gl~~giel 415 (447)
++.+..+... |+++.+.+
T Consensus 402 ----~~g~~~~~p~gg~~~~~~l 420 (498)
T 3ihj_A 402 ----VPGIHCNPLQGAMYAFPRI 420 (498)
T ss_dssp ----STTEECCCCCBSSEECCEE
T ss_pred ----CCCcEecCCCeEEEEEEec
Confidence 3334434444 45555555
No 195
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.73 E-value=1.5e-16 Score=160.60 Aligned_cols=253 Identities=16% Similarity=0.100 Sum_probs=161.5
Q ss_pred cccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccc
Q 013235 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV 214 (447)
Q Consensus 135 ~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~ 214 (447)
..++.++...+++++|+++++.. .+++++||+||++.+++ . ...++.||+..+.||+..........
T Consensus 49 ~~~~~~~~~~~lr~~la~~~g~~--~~i~~~sGt~a~~~al~-~--~~~gd~Vi~~~~~y~~~~~~~~~~~~-------- 115 (393)
T 1n8p_A 49 YSRSQNPNRENLERAVAALENAQ--YGLAFSSGSATTATILQ-S--LPQGSHAVSIGDVYGGTHRYFTKVAN-------- 115 (393)
T ss_dssp BTTTCCHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHH-T--SCSSCEEEEESSCCHHHHHHHHHTST--------
T ss_pred eecCCChhHHHHHHHHHHHhCCC--cEEEECChHHHHHHHHH-H--cCCCCEEEEeCCCchHHHHHHHHHHH--------
Confidence 34566778889999999998653 57788899999999998 3 23457899999999874332110000
Q ss_pred cCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHh----CCE
Q 013235 215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA----GGL 290 (447)
Q Consensus 215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~----g~l 290 (447)
..|+.....|. + . +++++.+. +++++|+++++++++|.+.+ +++|.++|+++ |++
T Consensus 116 -~~G~~v~~v~~--------~--d--~~l~~~i~----~~t~lv~~~~~~nptG~~~~----l~~i~~la~~~~~~~~~~ 174 (393)
T 1n8p_A 116 -AHGVETSFTND--------L--L--NDLPQLIK----ENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVI 174 (393)
T ss_dssp -TTCSCCEEESS--------H--H--HHHHHHSC----SSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCE
T ss_pred -HcCcEEEEeCC--------C--h--HHHHHhcc----cCceEEEEECCCCCcceecC----HHHHHHHHHHhCCCCCCE
Confidence 01221111111 1 1 45665553 26889999999999999886 99999999999 999
Q ss_pred EEEeccccCccccCCCcccccccCCCCCEE--EeeccccC-Cccc-cccccC-HHHHHhhcCCcccccCCCChHHHHHHH
Q 013235 291 CIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPL-GAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGH 365 (447)
Q Consensus 291 lI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pi-gav~~~-~~i~~~l~~~~~~~T~~~np~a~aaal 365 (447)
+|+||+|+++.+ . ..+. ++ +|++ +++|.+++ |+++ |+++++ +++++.+...........+|..++++.
T Consensus 175 livD~a~~~~~~-~-~~~~---~~--~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 247 (393)
T 1n8p_A 175 LVVDNTFLSPYI-S-NPLN---FG--ADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTH 247 (393)
T ss_dssp EEEECTTTHHHH-C-CGGG---GT--CSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred EEEeCCcccccc-C-CHHH---cC--CeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 999999987654 2 2321 23 6887 58899995 7889 888884 788887754322122334688887777
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCC-eeeE------------------ee-c-ceeEEEEEeeCCCCCCC
Q 013235 366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGI-IGDV------------------RG-R-GFLLGVEFVTDRQLKTP 424 (447)
Q Consensus 366 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~-i~~v------------------rg-~-Gl~~giel~~~~~~~~p 424 (447)
..++.+.. ..++..+..+.+.+.|++. +. +..+ +| . |.+++|++...
T Consensus 248 ~~l~~~~~--~~~~~~~~~~~l~~~L~~~----~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~------ 315 (393)
T 1n8p_A 248 RGLKTLHL--RVRQAALSANKIAEFLAAD----KENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGG------ 315 (393)
T ss_dssp HHHTTHHH--HHHHHHHHHHHHHHHHTSC----TTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSC------
T ss_pred hccchHHH--HHHHHHHHHHHHHHHHHhC----CCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCc------
Confidence 77764421 2233333444444444332 22 2222 34 5 88999998421
Q ss_pred CHHHHHHHHHHHHhCCc
Q 013235 425 AKAETLYIMDKMKGICA 441 (447)
Q Consensus 425 ~~~~~~~~~~~l~~~Gv 441 (447)
.....++.+.|...|+
T Consensus 316 -~~~~~~~l~~l~~~~~ 331 (393)
T 1n8p_A 316 -AEAASKFASSTRLFTL 331 (393)
T ss_dssp -HHHHHHHHHHCSSSEE
T ss_pred -HHHHHHHHhhCCcceE
Confidence 2345566666544343
No 196
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.73 E-value=3.3e-16 Score=158.83 Aligned_cols=281 Identities=13% Similarity=0.063 Sum_probs=170.1
Q ss_pred CHHHHHHHHHHHHhcccc---cccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCC
Q 013235 117 HPYVVDSIVNQIKRIQHS---TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNA 193 (447)
Q Consensus 117 ~p~v~~A~~~~l~~~~~~---~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~ 193 (447)
+|++.+++.++++..... ......+...+++++|++.++. +.+++++||++|++.+++.++. ..+++|++..++
T Consensus 15 ~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~--~~~i~~~~gt~al~~~~~~~~~-~~gd~Vl~~~~~ 91 (418)
T 2c81_A 15 SDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGV--PYCVPTTSGSTALMLALEALGI-GEGDEVIVPSLT 91 (418)
T ss_dssp CHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHTTC-CTTCEEEEESSS
T ss_pred CHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcCC-CCcCEEEECCCc
Confidence 689999999999875322 1112234478899999998854 3578899999999999997632 345789999999
Q ss_pred cccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCC
Q 013235 194 YHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELA 273 (447)
Q Consensus 194 yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~ 273 (447)
|++........ |...+..|... ..+..| .++|++.+. .++++|+++. ..|...
T Consensus 92 ~~~~~~~~~~~-------------g~~~~~~~~~~-~~~~~d----~~~l~~~i~----~~~~~v~~~~---~~G~~~-- 144 (418)
T 2c81_A 92 WIATATAVLNV-------------NALPVFVDVEA-DTYCID----PQLIKSAIT----DKTKAIIPVH---LFGSMA-- 144 (418)
T ss_dssp CTHHHHHHHHT-------------TCEEEEECBCT-TTCSBC----HHHHGGGCC----TTEEEECCBC---CTTCCC--
T ss_pred cHhHHHHHHHc-------------CCEEEEEecCC-CCCCcC----HHHHHHhhC----CCCeEEEEeC---CcCCcc--
Confidence 99876544322 22222222111 122234 556665553 2577777654 455543
Q ss_pred CChHHHHHHHHHHhCCEEEEeccccCcc-ccCCCcccccccCCCCCEEE--e--eccccCCccccccccC-HHHHHhhcC
Q 013235 274 PGYLPAVYKSIKKAGGLCIADEVQAGFA-RTGSHFWGFEAHGVVPDIVT--M--AKGIGNGIPLGAVVTT-PEIAEVLTR 347 (447)
Q Consensus 274 ~~~l~~l~~l~~~~g~llI~DEv~tGfg-r~G~~~~~~~~~gv~pDivt--~--sK~lg~G~pigav~~~-~~i~~~l~~ 347 (447)
.+++|.++|++||+++|+||+|+.+. ..| ...+..+|+++ | +|.+++| +.|+++++ +++++.+..
T Consensus 145 --~~~~i~~~~~~~~~~li~D~a~~~~~~~~~------~~~~~~~~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~~ 215 (418)
T 2c81_A 145 --NMDEINEIAQEHNLFVIEDCAQSHGSVWNN------QRAGTIGDIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQQ 215 (418)
T ss_dssp --CHHHHHHHHHHTTCEEEEECTTCTTCEETT------EETTSSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHH
T ss_pred --cHHHHHHHHHHCCCEEEEECcccccCccCC------EecccccceEEEeccCCcccCCC-CeEEEEECCHHHHHHHHH
Confidence 39999999999999999999998764 223 12223346664 4 8999988 89999984 777665542
Q ss_pred C-cccc-----------cCC--------------CChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 013235 348 R-NYFN-----------TFG--------------GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGII 401 (447)
Q Consensus 348 ~-~~~~-----------T~~--------------~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i 401 (447)
. .+.. .|. .+++.++.++..++.+ +++.++.+++.+++.+.|.++ +.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~----~g~ 289 (418)
T 2c81_A 216 LRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQEL--DDKNAIREKNAMFLNDALSKI----DGI 289 (418)
T ss_dssp HHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTS----TTE
T ss_pred HHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC----CCc
Confidence 1 0100 011 2455444444445433 235566666677777766543 222
Q ss_pred eeE-eecc----e--eEEEEEeeCCCCCCCCHHHHHHHHHHHHhC-Cce---eecc
Q 013235 402 GDV-RGRG----F--LLGVEFVTDRQLKTPAKAETLYIMDKMKGI-CAL---FFSQ 446 (447)
Q Consensus 402 ~~v-rg~G----l--~~giel~~~~~~~~p~~~~~~~~~~~l~~~-Gvl---v~~~ 446 (447)
.-. ...| . ++.+.+.+.... .....++.+.|.++ ||. ++..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~L~~~~gI~~~~v~~~ 341 (418)
T 2c81_A 290 KVMKRPPQVSRQTYYGYVFRFDPVKFG----GLNADQFCEILREKLNMGTFYLHPP 341 (418)
T ss_dssp EECCCCTTEEECCCSEEEEEECGGGTT----TCCHHHHHHHHHHHHTCCTTTEECC
T ss_pred ccCCCCCCCcccccEEEEEEEcccccc----ccCHHHHHHHHHHcCCCCccccccc
Confidence 111 1122 2 344555320000 00145788999999 999 7653
No 197
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.73 E-value=6.7e-16 Score=160.50 Aligned_cols=313 Identities=11% Similarity=0.044 Sum_probs=180.4
Q ss_pred cCCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccc-cchHHH----HHHHHHHHhCCCCC-ceEEEcCCHHH
Q 013235 96 ENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLY-LNHAIA----DFAEALASKMPGNL-KVVFFTNSGTE 169 (447)
Q Consensus 96 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~-~~~~~~----elae~L~~~~~~~~-~~v~~~~sGse 169 (447)
..+..|+|+..+ ++.+|.+.+++...+-... ...+ ..+... ++.++|+++++.+. +.++|++|||+
T Consensus 98 ~~~~~yl~~~~~------~~~~~~v~~~~~~~~~n~~--~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~ 169 (497)
T 2qma_A 98 TQHPDCIAHLHT------PPLMPAVAAEAMIAALNQS--MDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQ 169 (497)
T ss_dssp TTSTTBCSSSCC------CCBHHHHHHHHHHHHHCCC--TTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHH
T ss_pred CCCCCeeEeCCC------CCcHHHHHHHHHHHhhccc--ccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchH
Confidence 456678888754 4567888888765443211 1112 123333 44566888885433 67999999999
Q ss_pred HHHHHHHHHHhh------------cC-----CC-eEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCC
Q 013235 170 ANELAIMMARLY------------TG-----CN-DIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGV 231 (447)
Q Consensus 170 A~e~Aik~ar~~------------t~-----~~-~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~ 231 (447)
||..|++.+|.+ .| ++ .|++. ...|.....+....+.. ...+..++... .
T Consensus 170 a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s-~~~h~s~~~~~~~~g~g-------~~~v~~v~~~~----~ 237 (497)
T 2qma_A 170 SNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCS-KKSHFTVQKSASWMGLG-------EKAVMTVDANA----D 237 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEE-TTSCTHHHHHHHHTTSC-------GGGEEEECBCT----T
T ss_pred HHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEEC-CCchHHHHHHHHHcCCC-------cccEEEEecCC----C
Confidence 999999998642 12 23 44444 44554444443332210 00233444321 1
Q ss_pred CCCChHHHHHHHHHHHHccC-CC-CeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCccc
Q 013235 232 FGADGEMYAKDVQDLIDFGT-SG-HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWG 309 (447)
Q Consensus 232 ~~~d~~~~~~~le~~i~~~~-~~-~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~ 309 (447)
+..| .++|++.++... .+ ++.+|++...++++|.+.+ +++|.++|++||+++++||+|.|+...+ . +.
T Consensus 238 ~~~d----~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~-~-~~ 307 (497)
T 2qma_A 238 GTMD----ITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILS-S-HK 307 (497)
T ss_dssp SSBC----GGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGS-T-TG
T ss_pred CcCC----HHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhC-c-ch
Confidence 2234 345666554321 11 3557777766777787665 9999999999999999999999887655 3 33
Q ss_pred ccccCC-CCCEEEe--eccccCCccccccccCHH-HHHhhcCCc-cc---ccCCCChHHH----------HHHHHHHHHH
Q 013235 310 FEAHGV-VPDIVTM--AKGIGNGIPLGAVVTTPE-IAEVLTRRN-YF---NTFGGNPVCT----------AAGHAVLKVI 371 (447)
Q Consensus 310 ~~~~gv-~pDivt~--sK~lg~G~pigav~~~~~-i~~~l~~~~-~~---~T~~~np~a~----------aaala~L~~i 371 (447)
....++ .+|++++ +|.+++++++|+++.+++ .++.+.... +. .+...+++.. .+..++|+.+
T Consensus 308 ~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~l 387 (497)
T 2qma_A 308 SRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNV 387 (497)
T ss_dssp GGGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHT
T ss_pred HhhcCcccCCEEEEcchhccCCCcceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHh
Confidence 334566 7899987 899988889999987644 344443211 11 1111222222 1223455555
Q ss_pred hhh---hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235 372 QKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF 444 (447)
Q Consensus 372 ~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~ 444 (447)
..+ ++.++..+++++|.+.|+++. .+.++. ...+.++.+.+..... .......++.+.|.++|+++.
T Consensus 388 g~~g~~~~~~~~~~~a~~l~~~L~~~~-~~~~~~--~~~~~~v~f~~~~~~~---~~~~l~~~l~~~l~~~G~~~~ 457 (497)
T 2qma_A 388 GPKALGDMYDHLLAQTLEVADMIRTND-QFELLA--EPSLSTVLFRATHETA---DLDELNKALRLEALTRGIAVL 457 (497)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTCT-TEEECS--CCSSSEEEEEECCSSS---CHHHHHHHHHHHHHHHTSCBC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEc--CCCceEEEEEEcCCcc---CHHHHHHHHHHHHHhCCCEEE
Confidence 443 456667777888887776541 222222 2345577777753211 111234567888999998874
No 198
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.72 E-value=8.7e-18 Score=176.73 Aligned_cols=220 Identities=11% Similarity=0.066 Sum_probs=137.2
Q ss_pred EEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccchHHHHHHHHHH-HhCCC-----CCceEEEcCCHHHHHHHH
Q 013235 101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALA-SKMPG-----NLKVVFFTNSGTEANELA 174 (447)
Q Consensus 101 ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~-~~~~~-----~~~~v~~~~sGseA~e~A 174 (447)
++||..|. .++.+|.+++++.+++....+....+..+...++++.+. +.... +.++|+++++++||+..+
T Consensus 106 ~i~l~~g~----~~~~~~~~~~al~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~ 181 (546)
T 2zy4_A 106 SLSYVRDQ----LGLDPAAFLHEMVDGILGCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYI 181 (546)
T ss_dssp HHHHHHHT----SCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHH
T ss_pred hhecccCC----CCCCChHHHHHHHHhhhcCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHH
Confidence 46665544 367788899988887753322222222334445454443 22211 347899999999999999
Q ss_pred HHHH--Hhh-cCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC
Q 013235 175 IMMA--RLY-TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT 251 (447)
Q Consensus 175 ik~a--r~~-t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~ 251 (447)
++.. +.. .+++.|++.+++|++....+.... .|...++.|....+.|..| .++|++.+.
T Consensus 182 ~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~-----------~g~~~~~v~~~~~~~~~~d----~~~l~~~~~--- 243 (546)
T 2zy4_A 182 FESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQ-----------YALEEVAINADPSLNWQYP----DSELDKLKD--- 243 (546)
T ss_dssp HHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTT-----------SCCEEEEEECBGGGTTBCC----HHHHGGGGS---
T ss_pred HHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcC-----------CCcEEEEEecCcccCCCCC----HHHHHHhhC---
Confidence 9863 323 346789999999998776543211 0222222222222223334 455655432
Q ss_pred CCCeEEEEEccccCCCceeeCCCChHHHHHHHH--HHhCCEEEEeccccCccccCCCcccccccCCCCCEEEeecccc-C
Q 013235 252 SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSI--KKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIG-N 328 (447)
Q Consensus 252 ~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~--~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~sK~lg-~ 328 (447)
.++.+|++...++++|.+. +.+.+++|.++| +++|+++|+||+|.+|......+... ..+....+.+|||.+| .
T Consensus 244 -~~~k~v~l~~p~NPtG~~~-~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~-~~~~~i~~~S~SK~~g~~ 320 (546)
T 2zy4_A 244 -PAIKIFFCVNPSNPPSVKM-DQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAI-CPENTLLVYSFSKYFGAT 320 (546)
T ss_dssp -TTEEEEEEESSCSSSCBCC-CHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHH-CGGGEEEEEESTTTTTCG
T ss_pred -CCCeEEEEECCCCCCCccC-CHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHh-CCCCEEEEEeCccccCCC
Confidence 2566666556677778765 678899999999 78999999999999886532112111 1122223447999997 7
Q ss_pred CccccccccCHH-HHHhh
Q 013235 329 GIPLGAVVTTPE-IAEVL 345 (447)
Q Consensus 329 G~pigav~~~~~-i~~~l 345 (447)
|+|+|+++++++ +++.+
T Consensus 321 GlRiG~~~~~~~~l~~~l 338 (546)
T 2zy4_A 321 GWRLGVVAAHQQNVFDLA 338 (546)
T ss_dssp GGCEEEEEEESSCHHHHH
T ss_pred CcceEEEEECCHHHHHHH
Confidence 999999999875 76655
No 199
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.71 E-value=5e-17 Score=167.59 Aligned_cols=259 Identities=17% Similarity=0.090 Sum_probs=164.9
Q ss_pred ccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCC
Q 013235 138 YLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT 217 (447)
Q Consensus 138 ~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~ 217 (447)
+.++...+++++|+++++. +.+++++||++|+..+++ ...+++.||+.+++||+......... ...
T Consensus 130 ~g~~~~~~l~~~la~~~g~--~~~i~~~sGt~al~~~l~---~~~~Gd~Vi~~~~~y~~~~~~~~~~~---------~~~ 195 (464)
T 1ibj_A 130 SGNPTRDALESLLAKLDKA--DRAFCFTSGMAALSAVTH---LIKNGEEIVAGDDVYGGSDRLLSQVV---------PRS 195 (464)
T ss_dssp TCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHT---TSCTTCEEEEESSCCHHHHHHHHHTS---------GGG
T ss_pred CCCHHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHH---HhCCCCEEEEECCCchhHHHHHHHHH---------HHc
Confidence 4566788899999998854 467888999999998875 23466889999999987542210000 011
Q ss_pred CeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccc
Q 013235 218 GVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ 297 (447)
Q Consensus 218 g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~ 297 (447)
|...+..|. .| .+++++.+. +++++|++++.++++|.+.+ +++|.++|++||+++|+||+|
T Consensus 196 G~~v~~v~~-------~d----~~~l~~~i~----~~tk~v~l~~p~NptG~v~~----l~~i~~la~~~gi~livDea~ 256 (464)
T 1ibj_A 196 GVVVKRVNT-------TK----LDEVAAAIG----PQTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNSI 256 (464)
T ss_dssp TCEEEEECT-------TS----HHHHHHHCC----SSEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECTT
T ss_pred CCEEEEeCC-------CC----HHHHHHHhc----cCceEEEEeCCCCCCCEeec----HHHHHHHHHHcCCEEEEECCC
Confidence 232222221 13 567777664 36889999999999998885 999999999999999999999
Q ss_pred cCccccCCCcc-cccccCCCCCEE--EeeccccC--CccccccccC-HHHHHhhcCCcccccCCCChHHHHHHHHHHHHH
Q 013235 298 AGFARTGSHFW-GFEAHGVVPDIV--TMAKGIGN--GIPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVI 371 (447)
Q Consensus 298 tGfgr~G~~~~-~~~~~gv~pDiv--t~sK~lg~--G~pigav~~~-~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i 371 (447)
+. | ..+ ..+ ..+|++ +++|.+++ |+++|+++++ +++++.+........++.+|+++.+++++|+.+
T Consensus 257 ~~----g-~~~~~~~---~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~al~~~ 328 (464)
T 1ibj_A 257 MS----P-VLSRPLE---LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTM 328 (464)
T ss_dssp TC----T-TTCCGGG---TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTH
T ss_pred cc----c-ccCChhh---cCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhH
Confidence 63 2 121 122 346888 48899986 8899999998 478777653221123445788888888887543
Q ss_pred hh--hhHHHHHHHHHHHHHHHH------HHHHHhcCCe----eeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC
Q 013235 372 QK--DKLQNNAHVVGSYLKERL------TALKDKYGII----GDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGI 439 (447)
Q Consensus 372 ~~--~~l~~~~~~~g~~l~~~L------~~l~~~~~~i----~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~ 439 (447)
.. +...+++..+.+++++.- .+..++++.+ ...+|.|.|+++++. + .....++.+.|+..
T Consensus 329 ~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~-~-------~~~~~~~~~~L~~~ 400 (464)
T 1ibj_A 329 ALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG-S-------VALSKHLVETTKYF 400 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECS-C-------HHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEEC-C-------HHHHHHHHHhcCcc
Confidence 21 222344444444443210 0000111111 123467889999872 1 12244677887777
Q ss_pred Cceeec
Q 013235 440 CALFFS 445 (447)
Q Consensus 440 Gvlv~~ 445 (447)
||.++.
T Consensus 401 gi~v~~ 406 (464)
T 1ibj_A 401 SIAVSF 406 (464)
T ss_dssp EECSCC
T ss_pred eEeecC
Confidence 777653
No 200
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.71 E-value=9.2e-16 Score=151.46 Aligned_cols=277 Identities=10% Similarity=-0.035 Sum_probs=173.9
Q ss_pred CCHHHHHHHHHHHHhccc-cccccc--chHHHHHHHHHHHhCCC-CCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEc
Q 013235 116 CHPYVVDSIVNQIKRIQH-STVLYL--NHAIADFAEALASKMPG-NLKVVFFTNSGTEANELAIMMARLYTGCNDIISLR 191 (447)
Q Consensus 116 ~~p~v~~A~~~~l~~~~~-~~~~~~--~~~~~elae~L~~~~~~-~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~ 191 (447)
.+|+|.+++.+.+..... ....++ .+...++.+++++.+.. +.+.+++++||++|++.+++... .+ ++++..
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~---~~-~~i~~~ 90 (362)
T 3ffr_A 15 LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV---EK-KSFHCV 90 (362)
T ss_dssp CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC---SS-EEEEEE
T ss_pred CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc---CC-cEEEEc
Confidence 578999888888765321 111222 24567888999998854 34679999999999999998544 33 777777
Q ss_pred CCcccCchhhh-hccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCcee
Q 013235 192 NAYHGNAAGTM-GATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGII 270 (447)
Q Consensus 192 ~~yHG~~~~~~-~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~ 270 (447)
..+++...... ...+ ..+..++.+. .+..| .++++ + ..++.+|+++..++++|.+
T Consensus 91 ~~~~~~~~~~~~~~~g----------~~~~~v~~~~----~~~~d----~~~l~--~----~~~~~~v~~~~~~nptG~~ 146 (362)
T 3ffr_A 91 NGSFSKRFYEFAGELG----------REAYKEEAAF----GKGFY----PADIT--V----PADAEIICLTHNETSSGVS 146 (362)
T ss_dssp CSHHHHHHHHHHHHTT----------CEEEEEECCT----TCCCC----GGGCC--C----CTTCCEEEEESEETTTTEE
T ss_pred CcHHHHHHHHHHHHhC----------CCeEEEecCC----CCCCC----HHHHh--c----cCCccEEEEEcCCCCccee
Confidence 76666221111 1111 0122333221 12223 23444 1 2366788888888899988
Q ss_pred eCCCChHHHHHHHHHHh-CCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhhcC
Q 013235 271 ELAPGYLPAVYKSIKKA-GGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTR 347 (447)
Q Consensus 271 ~~~~~~l~~l~~l~~~~-g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l~~ 347 (447)
.+ +++|.++|++| |+++|+||+|..+... . +... .|+++++ |.++++..+|++++++++++.+..
T Consensus 147 ~~----l~~i~~la~~~p~~~li~D~a~~~~~~~----~--~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~ 214 (362)
T 3ffr_A 147 MP----VEDINTFRDKNKDALIFVDAVSSLPYPK----F--DWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKA 214 (362)
T ss_dssp CC----HHHHTTSGGGSTTSEEEEECTTTTTSSC----C--CTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHH
T ss_pred CC----HHHHHHHHHhCCCCEEEEecccccCCcc----c--ChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhh
Confidence 87 99999999999 9999999998633211 1 1111 6888654 999844446788889988776643
Q ss_pred Ccc--------------------c-ccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 013235 348 RNY--------------------F-NTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGD 403 (447)
Q Consensus 348 ~~~--------------------~-~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~ 403 (447)
... . ..+..+..+++++.++++.+.++ ++.++.+++.+++.+.|+++ +.+.-
T Consensus 215 ~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~ 290 (362)
T 3ffr_A 215 LLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESS----KVFSF 290 (362)
T ss_dssp HHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC----SSEEE
T ss_pred ccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc----cCcee
Confidence 111 1 14455677777777888877654 45566666666776666553 22221
Q ss_pred Ee-----ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235 404 VR-----GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ 446 (447)
Q Consensus 404 vr-----g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~ 446 (447)
+. ..+.++.+.+.+ ...++.+.|+++||.+.+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~gi~~~~g 328 (362)
T 3ffr_A 291 GVEDAKLRSMTTIVANTTM----------LPGEINKILEPFDMAVGAG 328 (362)
T ss_dssp SSSCGGGBCSSEEEEEESS----------CHHHHHHHHGGGTEEEEEC
T ss_pred ccCChhhcCCceEEEecCC----------CHHHHHHHHHHCCeEEecC
Confidence 11 124566666632 1467899999999998754
No 201
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.70 E-value=2.8e-16 Score=159.17 Aligned_cols=196 Identities=13% Similarity=0.047 Sum_probs=136.8
Q ss_pred ccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcccccc
Q 013235 136 VLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVV 215 (447)
Q Consensus 136 ~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~ 215 (447)
.+|+++...+|+++|+++++.. ..++++||++|+..+++ . ...++.|++.++.||+......... .
T Consensus 62 ~r~~~p~~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~-l--~~~gd~Vl~~~~~y~~~~~~~~~~~---------~ 127 (403)
T 3cog_A 62 SRSGNPTRNCLEKAVAALDGAK--YCLAFASGLAATVTITH-L--LKAGDQIICMDDVYGGTNRYFRQVA---------S 127 (403)
T ss_dssp ----CHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHT-T--SCTTCEEEEESSCCHHHHHHHHHTG---------G
T ss_pred cCCCCchHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHH-H--hCCCCEEEEeCCCcchHHHHHHHHH---------H
Confidence 3567888899999999998653 45677889999999997 3 3356789999999987543221110 0
Q ss_pred CCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC-CEEEEe
Q 013235 216 QTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG-GLCIAD 294 (447)
Q Consensus 216 ~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g-~llI~D 294 (447)
..|+.....|. +| .+++++.+. +++.+|++|.+++++|.+.+ +++|.++|+++| +++|+|
T Consensus 128 ~~G~~v~~v~~-------~d----~~~l~~~i~----~~t~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~~livD 188 (403)
T 3cog_A 128 EFGLKISFVDC-------SK----IKLLEAAIT----PETKLVWIETPTNPTQKVID----IEGCAHIVHKHGDIILVVD 188 (403)
T ss_dssp GGTCEEEEECT-------TS----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHTSSSCCEEEEE
T ss_pred HcCCEEEEECC-------CC----HHHHHHhcC----cCCeEEEEECCCCCCCeeeC----HHHHHHHHHHcCCCEEEEE
Confidence 11333222221 12 566776664 26789999999999999886 999999999999 999999
Q ss_pred ccccCccccCCCcccccccCCCCCEE--EeeccccC-C-ccccccccC-HHHHHhhcCCcccccCCCChHHHHHHHHHHH
Q 013235 295 EVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-G-IPLGAVVTT-PEIAEVLTRRNYFNTFGGNPVCTAAGHAVLK 369 (447)
Q Consensus 295 Ev~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G-~pigav~~~-~~i~~~l~~~~~~~T~~~np~a~aaala~L~ 369 (447)
|+|+++.. + . ..+..+|++ +++|.+++ | .++|+++++ +++++.+.......+...+|+.+++++..|+
T Consensus 189 ~~~~~~~~-~-~-----~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~ 261 (403)
T 3cog_A 189 NTFMSPYF-Q-R-----PLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLK 261 (403)
T ss_dssp CTTTCTTT-C-C-----TTTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred CCCccccc-C-C-----ccccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh
Confidence 99986532 2 1 122457888 57899985 4 689999985 7888777643333445578999888888876
Q ss_pred HH
Q 013235 370 VI 371 (447)
Q Consensus 370 ~i 371 (447)
.+
T Consensus 262 ~l 263 (403)
T 3cog_A 262 TL 263 (403)
T ss_dssp TH
T ss_pred HH
Confidence 54
No 202
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.69 E-value=2.6e-16 Score=159.43 Aligned_cols=246 Identities=11% Similarity=0.046 Sum_probs=148.5
Q ss_pred eEEEecCCcccccCC--CCCHHHHHHHHHHH-Hhccccccccc-chHHHHHHHHHHHhC----C--CCCc--eEEEcCCH
Q 013235 100 RYLDAFGGIATVCCG--HCHPYVVDSIVNQI-KRIQHSTVLYL-NHAIADFAEALASKM----P--GNLK--VVFFTNSG 167 (447)
Q Consensus 100 ~ylD~~~g~~~~~lG--h~~p~v~~A~~~~l-~~~~~~~~~~~-~~~~~elae~L~~~~----~--~~~~--~v~~~~sG 167 (447)
..|||..|....+=| ...+.|.+|.. .+ +.. ....|. .....+|.+.+++++ . ...+ .++.+++|
T Consensus 30 ~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~--~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~ 106 (405)
T 3k7y_A 30 EKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENY--KEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGG 106 (405)
T ss_dssp SCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHC--CCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHH
T ss_pred CcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCC--CCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCch
Confidence 357777665322112 23577777765 32 221 112232 334456666666543 1 1123 36899999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHH
Q 013235 168 TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLI 247 (447)
Q Consensus 168 seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i 247 (447)
++|+..++++.....+ +.|++.+++|.+........ |...+..|......|+-| .+++++.+
T Consensus 107 ~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~~d----~~~l~~~l 168 (405)
T 3k7y_A 107 TGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESR-------------GFNLKYINFFDYNLIDIN----YDLFLNDL 168 (405)
T ss_dssp HHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTT-------------TCEEEEECCEETTTTEEC----HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHc-------------CCeEEEEeccccccCCcC----HHHHHHHH
Confidence 9999999986654446 99999999998776544332 333333332111123345 56777777
Q ss_pred HccCCCCeEEEEEcc-ccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCC--Ccccccc-cCCCCCEE---
Q 013235 248 DFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGS--HFWGFEA-HGVVPDIV--- 320 (447)
Q Consensus 248 ~~~~~~~~aavi~Ep-i~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~--~~~~~~~-~gv~pDiv--- 320 (447)
... + +..++++.| .++++|.+. +.+.+++|.++|++||+++|.||+|.+|...+. ..+.... ....+.++
T Consensus 169 ~~~-~-~~~~i~l~~~~~NPTG~~~-s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 245 (405)
T 3k7y_A 169 RNI-P-NGSSVILQISCYNPCSVNI-EEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQ 245 (405)
T ss_dssp HHS-C-SSCEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEE
T ss_pred HhC-C-CCeEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEe
Confidence 542 1 334666665 578888775 788999999999999999999999999865431 1111211 12223444
Q ss_pred Eeecccc-CCccccccc---cCHHHHHhhcCC---cccccCC-CChHHHHHHHHHHH
Q 013235 321 TMAKGIG-NGIPLGAVV---TTPEIAEVLTRR---NYFNTFG-GNPVCTAAGHAVLK 369 (447)
Q Consensus 321 t~sK~lg-~G~pigav~---~~~~i~~~l~~~---~~~~T~~-~np~a~aaala~L~ 369 (447)
+|||.++ .|+|+|+++ .++++++.+... ....+++ .+.++++++.+.|+
T Consensus 246 S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~ 302 (405)
T 3k7y_A 246 SFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLN 302 (405)
T ss_dssp ECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH
T ss_pred eCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhC
Confidence 6999999 899999975 367766544321 1123343 34566666666664
No 203
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.66 E-value=5e-15 Score=151.10 Aligned_cols=252 Identities=17% Similarity=0.121 Sum_probs=156.9
Q ss_pred cccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccc
Q 013235 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNV 214 (447)
Q Consensus 135 ~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~ 214 (447)
..++.++...+|+++|+++.+. +.+++++||++|+..+++.. ..+++.||+.+++|++.........
T Consensus 76 y~r~~~p~~~~le~~lA~l~g~--~~~v~~~sG~~Ai~~al~al--~~~Gd~Vi~~~~~y~~~~~~~~~~~--------- 142 (430)
T 3ri6_A 76 YSRSSNPTVEDLEQRLKNLTGA--LGVLALGSGMAAISTAILTL--ARAGDSVVTTDRLFGHTLSLFQKTL--------- 142 (430)
T ss_dssp ----CCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHTHH---------
T ss_pred ccCCCCHHHHHHHHHHHHHHCC--CcEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCCchhHHHHHHHHH---------
Confidence 3456788999999999999854 45778899999999999865 3366889999999986554221000
Q ss_pred cCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEe
Q 013235 215 VQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD 294 (447)
Q Consensus 215 ~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~D 294 (447)
...|+.....+. +| .+++++.+. .++++|++|..++++|.+.+ +++|.++|+++|+++|+|
T Consensus 143 ~~~G~~~~~v~~-------~d----~~~l~~ai~----~~t~~v~~e~p~NptG~~~d----l~~i~~la~~~g~~livD 203 (430)
T 3ri6_A 143 PSFGIEVRFVDV-------MD----SLAVEHACD----ETTKLLFLETISNPQLQVAD----LEALSKVVHAKGIPLVVD 203 (430)
T ss_dssp HHTTCEEEEECT-------TC----HHHHHHHCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEE
T ss_pred HHcCCEEEEeCC-------CC----HHHHHHhhC----CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEE
Confidence 011333222221 13 567777664 26889999999999998886 999999999999999999
Q ss_pred ccccCccccCCCcccccccCCCCCEE--EeeccccC-Ccccccccc---CHHH------------------HHhhcCCcc
Q 013235 295 EVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGN-GIPLGAVVT---TPEI------------------AEVLTRRNY 350 (447)
Q Consensus 295 Ev~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~-G~pigav~~---~~~i------------------~~~l~~~~~ 350 (447)
|+++ +| .++....+|. |++ +++|.+++ |..+|.++. +..+ ++.+... .
T Consensus 204 ~a~~----~~-~~~~~~~~g~--div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~-~ 275 (430)
T 3ri6_A 204 TTMT----PP-YLLEAKRLGV--DIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKE-V 275 (430)
T ss_dssp CTTS----CT-TTCCGGGGTC--SEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHT-H
T ss_pred CCCc----cc-ccCChHHcCC--EEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHH-H
Confidence 9996 23 2222234555 555 57799986 444555443 2111 1111110 1
Q ss_pred cccCC--CChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe-----------------ecce-e
Q 013235 351 FNTFG--GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR-----------------GRGF-L 410 (447)
Q Consensus 351 ~~T~~--~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr-----------------g~Gl-~ 410 (447)
..+++ .+|+.++.++..|+.+.. ..++..++.+++.+.|+ +++.+..|. |.|. |
T Consensus 276 ~~~~g~~~~~~~a~l~l~~l~~l~~--r~~~~~~na~~la~~L~----~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~ 349 (430)
T 3ri6_A 276 FQNLGPSLSPHNAYLQSLGLETMAL--RIERSCQNAQELAHWLL----SIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSI 349 (430)
T ss_dssp HHHHCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHT----TCTTCEEEECTTSTTSTTHHHHHHHCSSCCSE
T ss_pred HHhcCCCCCHHHHHHHHhhhhhHHH--HHHHHHHHHHHHHHHHh----CCCCccEEECCCCCCCccHHHHHHhCCCCceE
Confidence 12223 367777777777765532 23444455555555443 456666665 3466 9
Q ss_pred EEEEEeeCCCCCCCCHHHHHHHHHHHHhCC
Q 013235 411 LGVEFVTDRQLKTPAKAETLYIMDKMKGIC 440 (447)
Q Consensus 411 ~giel~~~~~~~~p~~~~~~~~~~~l~~~G 440 (447)
++|++. ..+.+.++.+.|+-.+
T Consensus 350 lsf~l~--------~~~~~~~~~~~l~~~~ 371 (430)
T 3ri6_A 350 LTFELE--------SKEASYRFMDALKLIR 371 (430)
T ss_dssp EEEECS--------SHHHHHHHHHHCSSSE
T ss_pred EEEEEC--------CHHHHHHHHHhCCcce
Confidence 999984 2234567777665443
No 204
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.65 E-value=2.6e-14 Score=144.83 Aligned_cols=287 Identities=12% Similarity=0.085 Sum_probs=173.3
Q ss_pred CCHHHHHHHHHHHHh---ccc-ccccccchHHHHHHHHHHHhCCCCCceEEE---cCCHHHHHHHHHHHHHhhcCCCeEE
Q 013235 116 CHPYVVDSIVNQIKR---IQH-STVLYLNHAIADFAEALASKMPGNLKVVFF---TNSGTEANELAIMMARLYTGCNDII 188 (447)
Q Consensus 116 ~~p~v~~A~~~~l~~---~~~-~~~~~~~~~~~elae~L~~~~~~~~~~v~~---~~sGseA~e~Aik~ar~~t~~~~ii 188 (447)
|+++|.+|+.+.... ... +...|......+|++++++++.. +..++ ++||++|+..+++... ..++.|+
T Consensus 30 n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g~--e~alv~p~~~sGt~Ai~~al~all--~~GD~Vl 105 (409)
T 3jzl_A 30 NQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKT--EAALVRPQIISGTHAISTVLFGIL--RPDDELL 105 (409)
T ss_dssp HHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHTC--SEEEEETTSCSHHHHHHHHHHHHC--CTTCEEE
T ss_pred hHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhCC--CcEEEECCCccHHHHHHHHHHHhc--CCCCEEE
Confidence 457788887775321 111 12246667788999999999854 34445 8999999999997542 3567888
Q ss_pred EEc-CCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEcc----c
Q 013235 189 SLR-NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES----I 263 (447)
Q Consensus 189 ~~~-~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Ep----i 263 (447)
+.+ +.|.+.. .....++. +.......|+.....|... .+..| .+++++.+. .++.+|++|+ .
T Consensus 106 ~~~~~~y~~~~-~~~~~~g~--~~~~l~~~G~~~~~v~~~~--~g~~d----~e~l~~ai~----~~tklV~i~~s~g~p 172 (409)
T 3jzl_A 106 YITGQPYDTLE-EIVGIRKQ--GQGSLKDFHIGYSSVPLLE--NGDVD----FPRIAKKMT----PKTKMIGIQRSRGYA 172 (409)
T ss_dssp ECSSSCCTTHH-HHHTSSSS--SSSCTGGGTCEEEECCCCT--TSCCC----HHHHHHHCC----TTEEEEEEECSCTTS
T ss_pred EeCCCCcHhHH-HHHhcccc--hhhHHHHcCCEEEEeCCCC--CCCcC----HHHHHHhcc----CCCeEEEEECCCCCC
Confidence 887 5554432 22221111 0000111233333332211 12234 566776664 2678999998 8
Q ss_pred cCCCceeeCCCChHHHHHHHHHH--hCCEEEEeccccCccccCCCcccccccCCCCCEE--EeeccccCC-cc-cccccc
Q 013235 264 QGVGGIIELAPGYLPAVYKSIKK--AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNG-IP-LGAVVT 337 (447)
Q Consensus 264 ~~~gG~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G-~p-igav~~ 337 (447)
.++.|.+.+ +++|.++|++ +|+++|+||+|..+.... +......|++ +++|.++++ -+ .|++++
T Consensus 173 ~nptg~v~~----l~~I~~la~~~~~~~~livD~a~~~~~~~~------~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~ 242 (409)
T 3jzl_A 173 DRPSFTIEK----IKEMIVFVKNINPEVIVFVDNCYGEFVEYQ------EPPEVGADIIAGSLIKNPGGGLAKTGGYIAG 242 (409)
T ss_dssp SSCCCCHHH----HHHHHHHHHHHCTTCEEEEECTTCTTTSSC------CSGGGTCSEEEEETTSGGGTTTCSSCEEEEE
T ss_pred CCCcCcccc----HHHHHHHHHhhCCCCEEEEeCCcccccccC------CccccCCeEEEECccccCCccCCceEEEEEe
Confidence 888888876 9999999999 999999999986432111 1112235887 578999975 34 588999
Q ss_pred CHHHHHhhcCC--c--ccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc-CCeeeEeecceeEE
Q 013235 338 TPEIAEVLTRR--N--YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRGRGFLLG 412 (447)
Q Consensus 338 ~~~i~~~l~~~--~--~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~-~~i~~vrg~Gl~~g 412 (447)
++++++.+... . ...+.+..+..+.+++..|+.+ +...++..+...++.+.|+++-.+. +. .+-++..+++.
T Consensus 243 ~~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~v~p~-~~~~~~~~i~~ 319 (409)
T 3jzl_A 243 KEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAMLAEFGVEADPV-WDAPRTDLIQS 319 (409)
T ss_dssp CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCEEESC-TTSCCSSSCCE
T ss_pred CHHHHHHHHHHhccccccccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhCCCcccCC-CCCCCccEEEE
Confidence 99999887642 1 1123333332233444445433 3456667777888888887752110 00 01123344888
Q ss_pred EEEeeCCCCCCCCHHHHHHHHHHHHhCC
Q 013235 413 VEFVTDRQLKTPAKAETLYIMDKMKGIC 440 (447)
Q Consensus 413 iel~~~~~~~~p~~~~~~~~~~~l~~~G 440 (447)
|++. +.+.+.++++.|.+..
T Consensus 320 i~l~--------~~~~~~~~~~~L~~~~ 339 (409)
T 3jzl_A 320 VSFH--------NKEKMVAFAQAIQAAS 339 (409)
T ss_dssp EECS--------CHHHHHHHHHHHHHTS
T ss_pred EEeC--------CHHHHHHHHHHHHhcC
Confidence 8873 2355778888888765
No 205
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.63 E-value=1.3e-15 Score=156.25 Aligned_cols=255 Identities=11% Similarity=0.006 Sum_probs=155.4
Q ss_pred cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCC
Q 013235 139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG 218 (447)
Q Consensus 139 ~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g 218 (447)
+.....++.+.+++ ++.+ +.++|+|||++|+..+++.+. .++++|++.+++|++........ +..
T Consensus 55 ~~~~~~~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~~--~~gd~Vlv~~~~h~s~~~~~~~~-G~~---------- 119 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSFS--QKKGDILMARNVHKSVLHALDIS-QQE---------- 119 (446)
T ss_dssp CSSHHHHHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTTT--TSSSCEEECTTCCHHHHHHHHHH-TCC----------
T ss_pred cchHHHHHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHhc--CCCCEEEEecCccHHHHHHHHHc-CCe----------
Confidence 34566788888888 7654 678999999999999998663 36688999999888766544332 211
Q ss_pred eEeecC--CCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecc
Q 013235 219 VHHALN--PDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV 296 (447)
Q Consensus 219 ~~~~~~--p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv 296 (447)
+..++. ...+...+..| .+++ +. + +++++++++ ++.+|.+.+ +++|.++|++||+++|+||+
T Consensus 120 ~~~v~~~~~~~~~~~~~~d----~~~l---~~---~-~~~~v~~~~-~n~~G~~~~----l~~I~~l~~~~~~~livDea 183 (446)
T 2x3l_A 120 GHFIETHQSPLTNHYNKVN----LSRL---NN---D-GHKLVVLTY-PNYYGETFN----VEEVIKSLHQLNIPVLIDEA 183 (446)
T ss_dssp EEECEEEECTTTSSEEEEE----C--------------CCEEEEES-SCTTSCCCC----HHHHHHHHHHTTCCEEEECT
T ss_pred EEEEeCeeccccCcCCCCC----HHHH---cC---C-CceEEEEEC-CCCCeEecC----HHHHHHHHHhcCCeEEEcch
Confidence 111111 00000001112 1223 11 2 456677776 555788776 99999999999999999999
Q ss_pred ccC-ccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHH--hhcCC-cccccCCCChHHHHHHHHHHHH
Q 013235 297 QAG-FARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAE--VLTRR-NYFNTFGGNPVCTAAGHAVLKV 370 (447)
Q Consensus 297 ~tG-fgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~--~l~~~-~~~~T~~~np~a~aaala~L~~ 370 (447)
|++ +...| ..+..... .+|+++.| |.++++.++|++++++++++ .+... ....+.+.+...+++..++++.
T Consensus 184 ~~~~~~f~~-~~~~~~~~--g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~ 260 (446)
T 2x3l_A 184 HGAHFGLQG-FPDSTLNY--QADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQF 260 (446)
T ss_dssp TCTTTTSTT-SCCCGGGG--TCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred hhhhhccCC-CCCChHHc--CCCEEEECCccccccccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 986 32333 22222223 37999876 98887778899998877643 22211 1223455666766666667777
Q ss_pred Hhhh--h-HHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235 371 IQKD--K-LQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF 444 (447)
Q Consensus 371 i~~~--~-l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~ 444 (447)
+++. + +.++.+++.+++++. .+..+. ...+..+.+.+. . ....++.+.|+++||.+.
T Consensus 261 l~~~g~~~~~~~~~~l~~~l~~~------g~~~~~--~~~~~~l~i~~~-~--------~~~~~l~~~L~~~GI~v~ 320 (446)
T 2x3l_A 261 YKTYDSTLFFAKRAQLIECLENK------GFEMLQ--VDDPLKLLIKYE-G--------FTGHDIQNWFMNAHIYLE 320 (446)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHH------TCEEEE--CSSTTEEEEECT-T--------SCHHHHHHHHHHTTEEES
T ss_pred HHHhCHHHHHHHHHHHHHHHHHc------CCEECc--CCCCeEEEEEeC-C--------cCHHHHHHHHHHCCCEEE
Confidence 7653 2 677777777777665 221111 112334555542 0 013568889999999986
No 206
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.63 E-value=9.7e-15 Score=148.36 Aligned_cols=240 Identities=13% Similarity=0.040 Sum_probs=152.9
Q ss_pred ccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCcc
Q 013235 132 QHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWK 211 (447)
Q Consensus 132 ~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~ 211 (447)
.|...++.++...+++++|+++.+. +.+++++||++|+.++++... ..++.||+....|++.........
T Consensus 73 ~~~y~r~~~p~~~~le~~lA~l~g~--~~~i~~ssGt~Ai~~al~~l~--~~Gd~Vi~~~~~y~~~~~~~~~~l------ 142 (415)
T 2fq6_A 73 ELFYGRRGTLTHFSLQQAMCELEGG--AGCVLFPCGAAAVANSILAFI--EQGDHVLMTNTAYEPSQDFCSKIL------ 142 (415)
T ss_dssp SCCCTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHTTC--CTTCEEEEETTSCHHHHHHHHHTG------
T ss_pred CccccCCCCchHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHHh--CCCCEEEEeCCCchHHHHHHHHHH------
Confidence 3555667789999999999999864 356677999999999998432 256789999999886442211100
Q ss_pred ccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHH--hCC
Q 013235 212 FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKK--AGG 289 (447)
Q Consensus 212 ~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~--~g~ 289 (447)
...|+.....+. +| .+++++.+. .++.+|++|.+++++|.+.+ +++|.++|++ +|+
T Consensus 143 ---~~~G~~v~~v~~-------~d----~~~le~ai~----~~tklV~~e~~~NptG~v~d----l~~I~~la~~~~~g~ 200 (415)
T 2fq6_A 143 ---SKLGVTTSWFDP-------LI----GADIVKHLQ----PNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDA 200 (415)
T ss_dssp ---GGGTCEEEEECT-------TC----GGGGGGGCC----TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTC
T ss_pred ---HHcCcEEEEECC-------CC----HHHHHHhhc----cCCcEEEEECCCCCCCEeec----HHHHHHHHHhhcCCC
Confidence 011332222111 12 345665553 25789999999999999887 9999999999 999
Q ss_pred EEEEeccccCccccCCCcccccccCCCCCEEE--eeccccC-C-ccccccccCHHHHHhhcCCcccccCCCChHHHHHHH
Q 013235 290 LCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MAKGIGN-G-IPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGH 365 (447)
Q Consensus 290 llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~sK~lg~-G-~pigav~~~~~i~~~l~~~~~~~T~~~np~a~aaal 365 (447)
++|+||+|... ..+ .. .....|+++ ++|.+++ | ...|++++++++++.+...........+|..++.++
T Consensus 201 ~livD~a~a~~-~~~-~p-----~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~ 273 (415)
T 2fq6_A 201 IIMIDNTWAAG-VLF-KA-----LDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITS 273 (415)
T ss_dssp EEEEECTTTTT-TSS-CG-----GGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred EEEEECCCccc-ccC-Cc-----cccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 99999999632 112 11 123468884 6799986 4 456899998887776653211111123577666666
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeE------------------eecceeEEEEEe
Q 013235 366 AVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDV------------------RGRGFLLGVEFV 416 (447)
Q Consensus 366 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------------rg~Gl~~giel~ 416 (447)
..|+.+.. ..++..++...+.+.|++. +.+..+ +|.|.++.|++.
T Consensus 274 ~~l~~l~~--r~~~~~~n~~~l~~~L~~~----~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~ 336 (415)
T 2fq6_A 274 RGLRTLGV--RLRQHHESSLKVAEWLAEH----PQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLK 336 (415)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHTC----TTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEES
T ss_pred hhhhHHHH--HHHHHHHHHHHHHHHHHcC----CCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC
Confidence 66665422 2333344455555555443 222221 356889999984
No 207
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.62 E-value=7.3e-14 Score=140.06 Aligned_cols=284 Identities=12% Similarity=0.018 Sum_probs=173.8
Q ss_pred CCHHHHHHHHHHHHhcccccccccchHHHHHHHHH-HHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCc
Q 013235 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEAL-ASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194 (447)
Q Consensus 116 ~~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L-~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~y 194 (447)
..|++.+|+.+.++....+. ..+...+|++++ ++++. ..+.+++++||++|+..+++.+. ...++.||+...+|
T Consensus 14 ~~~~i~~a~~~~~~~~~~~~---~~~~~~~l~~~~~a~~~g-~~~~~v~~~sgt~al~~al~~l~-~~~Gd~Vi~~~~~~ 88 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHIYTN---YGPINQRFEQTIMSGFFQ-NRGAVTTVANATLGLMAAIQLKK-RKKGKYALMPSFTF 88 (377)
T ss_dssp CGGGGHHHHHHHHHHTCCSS---SCHHHHHHHHHHHHHTST-TCSEEEEESCHHHHHHHHHHHHS-CTTCCEEEEESSSC
T ss_pred CcHHHHHHHHHHHHcCCccc---CCHHHHHHHHHHHHHHhC-CCCeEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCCc
Confidence 45788999998887753211 256788999999 99985 24678899999999999998652 23568899999998
Q ss_pred ccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCC
Q 013235 195 HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAP 274 (447)
Q Consensus 195 HG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~ 274 (447)
.+........ |...+..+... ..|..| .+++++.+.... .++.+|+ |++ ..|...+
T Consensus 89 ~~~~~~~~~~-------------G~~~~~v~~~~-~~~~~d----~~~l~~~i~~~~-~~tk~v~--~~~-~~G~~~~-- 144 (377)
T 3ju7_A 89 PATPLAAIWC-------------GLEPYFIDISI-DDWYMD----KTVLWDKIEELK-EEVAIVV--PYA-TFGSWMN-- 144 (377)
T ss_dssp THHHHHHHHT-------------TCEEEEECBCT-TTCSBC----HHHHHHHHHHHG-GGEEEEC--CBC-GGGBCCC--
T ss_pred HHHHHHHHHc-------------CCEEEEEecCC-ccCCcC----HHHHHHHHhcCC-CCceEEE--EEC-CCCCccC--
Confidence 7644332221 22222222110 123335 567777663210 1266666 333 4566554
Q ss_pred ChHHHHHHHHHHhCCEEEEeccccCccccCCCccccccc-CCCCCEEEee----ccccCCcccccccc-CHHHHHhhcCC
Q 013235 275 GYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAH-GVVPDIVTMA----KGIGNGIPLGAVVT-TPEIAEVLTRR 348 (447)
Q Consensus 275 ~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~-gv~pDivt~s----K~lg~G~pigav~~-~~~i~~~l~~~ 348 (447)
+++|.++|+ ||+++|+|++|+ +|. .+..... +...|+.++| |.+++| ..|++++ ++++++.+...
T Consensus 145 --~~~i~~la~-~~~~vi~D~a~a-~g~----~~~~~~~g~~~~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l~~~~~~~ 215 (377)
T 3ju7_A 145 --LEEYEELEK-KGVPVVVDAAPG-FGL----MNGGMHYGQDFSGMIIYSFHATKPFGIG-EGGLIYSKNEEDIQRIKRM 215 (377)
T ss_dssp --CHHHHHHHH-TTCCBEEECTTC-TTC----EETTEETTTTCSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHH
T ss_pred --HHHHHHHHh-cCCEEEEECCCc-cCC----eECCEeccCCCCcEEEEECCCCCcCCCC-CcEEEEECCHHHHHHHHHH
Confidence 899999999 999999999996 432 1111223 2336888776 999875 4566665 46666554321
Q ss_pred -cc-----------cccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCeee--EeecceeEEE
Q 013235 349 -NY-----------FNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDK-YGIIGD--VRGRGFLLGV 413 (447)
Q Consensus 349 -~~-----------~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~-~~~i~~--vrg~Gl~~gi 413 (447)
.+ +..+.-+++.++.+++.|+.++ ...++.+++.+++.+.|.++..- ...... ....-+++.+
T Consensus 216 ~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~--~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (377)
T 3ju7_A 216 GNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKWD--DKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPI 293 (377)
T ss_dssp TBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEE
T ss_pred HhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEE
Confidence 11 2345567888888888887553 45667777788888887765210 111100 0111123334
Q ss_pred EEeeCCCCCCCCHHHHHHHHHHHHhCCceeeccC
Q 013235 414 EFVTDRQLKTPAKAETLYIMDKMKGICALFFSQY 447 (447)
Q Consensus 414 el~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~~ 447 (447)
.+.+. ....++.+.|.++||.++..|
T Consensus 294 ~~~~~--------~~~~~l~~~L~~~gI~~~~~~ 319 (377)
T 3ju7_A 294 LCPEE--------VRNKQVIEDLKKQKIEARLYF 319 (377)
T ss_dssp ECCTT--------SCHHHHHHHHHTTTBCCBCTT
T ss_pred EeCCh--------hhHHHHHHHHHHCCCceeccc
Confidence 33210 014679999999999887643
No 208
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.59 E-value=3.6e-13 Score=138.07 Aligned_cols=292 Identities=14% Similarity=0.021 Sum_probs=163.7
Q ss_pred CCHHHHHHHHHHHHhccccccccc--chHHHHHHHHHHHhCCCCCc-----eEEEcCCHHHHHHHHHHHHHhh-------
Q 013235 116 CHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPGNLK-----VVFFTNSGTEANELAIMMARLY------- 181 (447)
Q Consensus 116 ~~p~v~~A~~~~l~~~~~~~~~~~--~~~~~elae~L~~~~~~~~~-----~v~~~~sGseA~e~Aik~ar~~------- 181 (447)
.||.+.+++.+.++........++ .....++.+.|+++++.+.+ .+++++||+||+..+++.++..
T Consensus 54 ~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~ 133 (452)
T 2dgk_A 54 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA 133 (452)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 568999998887764321111222 23345677778888865443 3899999999999999887641
Q ss_pred cC----CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEE
Q 013235 182 TG----CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAG 257 (447)
Q Consensus 182 t~----~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aa 257 (447)
.| ++.||+.+ .|.....+.... |+..+..|... ..+..| .++|++.+.. ++.+
T Consensus 134 ~G~~~~~~~vi~~~--~h~~~~~~~~~~------------G~~v~~v~~~~-~~~~~d----~~~l~~~i~~----~t~~ 190 (452)
T 2dgk_A 134 AGKPTDKPNLVCGP--VQICWHKFARYW------------DVELREIPMRP-GQLFMD----PKRMIEACDE----NTIG 190 (452)
T ss_dssp TTCCCSCCEEEESS--CCHHHHHHHHHT------------TCEEEECCCBT-TBCSCC----HHHHHHHCCT----TEEE
T ss_pred cCCCCCCcEEEECC--CcHHHHHHHHHc------------CceEEEEecCC-CCCeEC----HHHHHHHHhh----CCEE
Confidence 23 34666655 664444333222 22222222211 123334 5677777642 4566
Q ss_pred EEEccccCCCceeeCCCChHHHHHHHHHHh------CCEEEEeccccCccc---cCCCcccccccCCCCCEEEee--ccc
Q 013235 258 FLSESIQGVGGIIELAPGYLPAVYKSIKKA------GGLCIADEVQAGFAR---TGSHFWGFEAHGVVPDIVTMA--KGI 326 (447)
Q Consensus 258 vi~Epi~~~gG~~~~~~~~l~~l~~l~~~~------g~llI~DEv~tGfgr---~G~~~~~~~~~gv~pDivt~s--K~l 326 (447)
|++.-..+.+|.+.+ +++|.++|+++ |+++++||+|.++.. .+...+.++. ...|.++++ |.+
T Consensus 191 v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~hK~~ 264 (452)
T 2dgk_A 191 VVPTFGVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRL--PRVKSISASGHKFG 264 (452)
T ss_dssp EECBBSCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTTT
T ss_pred EEEEcCCcCCcccCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCC--CCCcEEEECccccc
Confidence 666655556788766 99999999996 999999999987632 1211111111 135777665 865
Q ss_pred cCCccccccccCHH-HH-HhhcCC-ccc----cc--CCCC--hHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHH
Q 013235 327 GNGIPLGAVVTTPE-IA-EVLTRR-NYF----NT--FGGN--PVCTAAGHAVLKVIQKDK---LQNNAHVVGSYLKERLT 392 (447)
Q Consensus 327 g~G~pigav~~~~~-i~-~~l~~~-~~~----~T--~~~n--p~a~aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~ 392 (447)
.+|+.+|+++++++ ++ +.+... .+. .+ ..+. .....+..++|+.+..+. ..++..++.++|.+.|+
T Consensus 265 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~ 344 (452)
T 2dgk_A 265 LAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIA 344 (452)
T ss_dssp CCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999998643 32 433211 111 01 1111 112233334454443333 44555566666666665
Q ss_pred HHHHhcCCeeeE-e----ecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235 393 ALKDKYGIIGDV-R----GRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF 444 (447)
Q Consensus 393 ~l~~~~~~i~~v-r----g~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~ 444 (447)
++ +.+.-+ + ....++.+.+........ ...++.+.|.++|++++
T Consensus 345 ~~----~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~----~~~~l~~~L~~~Gi~v~ 393 (452)
T 2dgk_A 345 KL----GPYEFICTGRPDEGIPAVCFKLKDGEDPGY----TLYDLSERLRLRGWQVP 393 (452)
T ss_dssp TT----SSEEEEEECCTTTBSSEEEEEECTTCCCSC----CHHHHHHHHHHTTCBCC
T ss_pred hC----CCeEEecCCCCCCCeEEEEEEecCcccccC----CHHHHHHHHHhcCCeee
Confidence 43 323222 2 245666676642110000 13568899999999764
No 209
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.58 E-value=3.5e-13 Score=137.11 Aligned_cols=284 Identities=13% Similarity=0.078 Sum_probs=170.6
Q ss_pred CCHHHHHHHHHHHHhc---c-cccccccchHHHHHHHHHHHhCCCCCceEEE---cCCHHHHHHHHHHHHHhhcCCCeEE
Q 013235 116 CHPYVVDSIVNQIKRI---Q-HSTVLYLNHAIADFAEALASKMPGNLKVVFF---TNSGTEANELAIMMARLYTGCNDII 188 (447)
Q Consensus 116 ~~p~v~~A~~~~l~~~---~-~~~~~~~~~~~~elae~L~~~~~~~~~~v~~---~~sGseA~e~Aik~ar~~t~~~~ii 188 (447)
|+++|.+|+.+..... . .....|......+|++++++++.. +..++ ++||++||..++... ..+++.|+
T Consensus 45 n~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~--e~alv~p~~~sGt~A~~~al~al--l~pGD~Vl 120 (427)
T 3hvy_A 45 NQLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNT--ESAFVRPHFVNGTHAIGAALFGN--LRPNDTMM 120 (427)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTC--SEEEEETTCCSHHHHHHHHHHHT--CCTTCEEE
T ss_pred hHHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCC--CceEEeCCCCcHHHHHHHHHHHh--cCCCCEEE
Confidence 4578888877643211 1 111235566788899999999854 44455 899999999998754 33568888
Q ss_pred EEc-CCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEcc----c
Q 013235 189 SLR-NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES----I 263 (447)
Q Consensus 189 ~~~-~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Ep----i 263 (447)
+.+ +.|++..... ..... .+.......|+.....|. . .+..| .+++++.+.+. .++.+|++++ .
T Consensus 121 ~~~~~~y~~~~~~~-g~~~~-~~~~~l~~~G~~~~~v~~-~--~~~~d----~e~l~~~i~~~--~~tklV~i~~s~gyp 189 (427)
T 3hvy_A 121 SICGMPYDTLHDII-GMDDS-KKVGSLREYGVKYKMVDL-K--DGKVD----INTVKEELKKD--DSIKLIHIQRSTGYG 189 (427)
T ss_dssp ECSSSCCGGGHHHH-TCCTT-CCSCCTGGGTCEEEECCC-B--TTBCC----HHHHHHHHHHC--TTEEEEEEESSCCSS
T ss_pred EeCCCCchhHHHHh-ccccc-hhhhHHHHcCCEEEEecC-C--CCCcC----HHHHHHHhhCC--CCCEEEEEECCCCCC
Confidence 888 7776554111 11100 000001112444333332 1 12234 56777777631 2678999999 7
Q ss_pred cCCCceeeCCCChHHHHHHHHHH--hCCEEEEeccccCccccCCCcccccccCCCCCEE--EeeccccCC--cccccccc
Q 013235 264 QGVGGIIELAPGYLPAVYKSIKK--AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNG--IPLGAVVT 337 (447)
Q Consensus 264 ~~~gG~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G--~pigav~~ 337 (447)
.++.|.+.+ +++|.++|++ +|+++|+||++..+.... . ......|++ +++|.++++ ...|++++
T Consensus 190 ~nptg~v~d----l~~i~~ia~~~~~g~~livD~a~~~~~~~~-~-----p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~ 259 (427)
T 3hvy_A 190 WRKSLRIAE----IAEIIKSIREVNENVIVFVDNCYGEFVEEK-E-----PTDVGADIIAGSLIKNIGGGIATTGGYIAG 259 (427)
T ss_dssp SSCCCCHHH----HHHHHHHHHHHCSSSEEEEECTTCTTTSSS-C-----GGGGTCSEEEEETTSGGGTTTCCSCEEEEE
T ss_pred CCccccHHH----HHHHHHHHHHhCCCCEEEEECCccccccCC-C-----CcccCCeEEEECCcccccccccceEEEEEE
Confidence 777777765 9999999999 899999999986442111 1 111234777 578999974 34588889
Q ss_pred CHHHHHhhcCCc----ccccCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEe-----ecc
Q 013235 338 TPEIAEVLTRRN----YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVR-----GRG 408 (447)
Q Consensus 338 ~~~i~~~l~~~~----~~~T~~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr-----g~G 408 (447)
++++++.+.... ...+.+.++..+..++..|+.+ +...++..+...++.+.|+++ +.-. .+ +..
T Consensus 260 ~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~V-~p~~~~~~~~ 332 (427)
T 3hvy_A 260 KEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCARIMELA----GFDV-LPKYNDKRTD 332 (427)
T ss_dssp CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEE-ESCTTSCCSS
T ss_pred CHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhC----CCee-cCCCCCCCce
Confidence 999998876421 1112222122234444444432 345666777777887777665 2211 22 233
Q ss_pred eeEEEEEeeCCCCCCCCHHHHHHHHHHHHhC
Q 013235 409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKGI 439 (447)
Q Consensus 409 l~~giel~~~~~~~~p~~~~~~~~~~~l~~~ 439 (447)
+++.|.+. +.+.+.++++.|...
T Consensus 333 li~~~~l~--------~~~~~~~f~~~l~~~ 355 (427)
T 3hvy_A 333 IIQAIKFN--------DEKKLIDFIKGIQTA 355 (427)
T ss_dssp SEEEEECS--------SHHHHHHHHHHHHHT
T ss_pred EEEEEeCC--------CHHHHHHHHHHhccc
Confidence 47788773 234567888888764
No 210
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.56 E-value=2.1e-13 Score=141.79 Aligned_cols=277 Identities=11% Similarity=-0.017 Sum_probs=157.3
Q ss_pred HHHHHHHHHhCCCC--CceEEEcCCHHHHHHHHHHHHHhh-------cC----CC-eEEEEcCCcccCchhhhhccCCCC
Q 013235 144 ADFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLY-------TG----CN-DIISLRNAYHGNAAGTMGATAQSN 209 (447)
Q Consensus 144 ~elae~L~~~~~~~--~~~v~~~~sGseA~e~Aik~ar~~-------t~----~~-~ii~~~~~yHG~~~~~~~~t~~~~ 209 (447)
.++.++|+++++.+ .+.++|++||||||..|++.+|.+ .| ++ .|++.+.+ |.....+....+..
T Consensus 135 ~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~-h~s~~~~~~~~g~g- 212 (504)
T 2okj_A 135 QITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQS-HYSIKKAGAALGFG- 212 (504)
T ss_dssp HHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTS-CTHHHHHHHHTTSC-
T ss_pred HHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcc-hHHHHHHHHHcCCC-
Confidence 44556677777654 567999999999999999998753 23 13 45554444 44443333322210
Q ss_pred ccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHh
Q 013235 210 WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA 287 (447)
Q Consensus 210 ~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~ 287 (447)
...+..++... .+..| .++|++.++.. ...++++|++....+..|.+.+ +++|.++|++|
T Consensus 213 ------~~~v~~v~~~~----~~~~d----~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I~~la~~~ 274 (504)
T 2okj_A 213 ------TDNVILIKCNE----RGKII----PADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEKY 274 (504)
T ss_dssp ------GGGEEEECBCT----TSCBC----HHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHHHHHHHHH
T ss_pred ------cccEEEEecCC----CCCCC----HHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHc
Confidence 00233444321 12234 56677666531 1125788888777777888766 99999999999
Q ss_pred CCEEEEeccccCccccCCCcccccccCC-CCCEEEee--ccccCCccccccccCH-HHHHh-hcCC-ccc---cc-----
Q 013235 288 GGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTMA--KGIGNGIPLGAVVTTP-EIAEV-LTRR-NYF---NT----- 353 (447)
Q Consensus 288 g~llI~DEv~tGfgr~G~~~~~~~~~gv-~pDivt~s--K~lg~G~pigav~~~~-~i~~~-l~~~-~~~---~T----- 353 (447)
|+++++|++|.|+..... -+.....++ .+|+++++ |.+++++++|++++++ ++++. +... .+. .+
T Consensus 275 g~~lhvD~a~~~~~~~~~-~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 353 (504)
T 2okj_A 275 NLWLHVDAAWGGGLLMSR-KHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVS 353 (504)
T ss_dssp TCEEEEEETTGGGGGGCT-TTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGG
T ss_pred CCEEEEehhhhhHHHhCH-hhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCc
Confidence 999999999988754331 111222344 68999886 9888778899999876 46553 2111 111 00
Q ss_pred -----C------CCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCC-C
Q 013235 354 -----F------GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQ-L 421 (447)
Q Consensus 354 -----~------~~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~-~ 421 (447)
+ ..+.+++.++++++..-.-+++.++..++.++|.+.|+++ ..+.++......+.++.+.+..... .
T Consensus 354 ~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~-~~~~~~~~~~p~~~~v~f~~~~~~~~~ 432 (504)
T 2okj_A 354 YDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFNGEPEHTNVCFWYIPQSLRG 432 (504)
T ss_dssp GCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-TTEEESSSSCCSSSCEEEEECCGGGSS
T ss_pred CCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEecCCCCeEEEEEEEeCccccc
Confidence 0 1235666666555542111235566667777777776653 1222221101234444555432110 0
Q ss_pred CCCCH-------HHHHHHHHHHHhCCce
Q 013235 422 KTPAK-------AETLYIMDKMKGICAL 442 (447)
Q Consensus 422 ~~p~~-------~~~~~~~~~l~~~Gvl 442 (447)
..... ....++.+.|.++|++
T Consensus 433 ~~~~~~~~~~~~~~~~~l~~~L~~~G~~ 460 (504)
T 2okj_A 433 VPDSPQRREKLHKVAPKIKALMMESGTT 460 (504)
T ss_dssp CCCCHHHHHHHTTHHHHHHHHHHHHTSC
T ss_pred cccchhhHHHHHHHHHHHHHHHHhCCcE
Confidence 00000 1135688899999964
No 211
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.56 E-value=8.8e-13 Score=134.18 Aligned_cols=285 Identities=14% Similarity=0.107 Sum_probs=169.4
Q ss_pred CHHHHHHHHHHHH--h-ccc-ccccccchHHHHHHHHHHHhCCCCCceEEE---cCCHHHHHHHHHHHHHhhcCCCeEEE
Q 013235 117 HPYVVDSIVNQIK--R-IQH-STVLYLNHAIADFAEALASKMPGNLKVVFF---TNSGTEANELAIMMARLYTGCNDIIS 189 (447)
Q Consensus 117 ~p~v~~A~~~~l~--~-~~~-~~~~~~~~~~~elae~L~~~~~~~~~~v~~---~~sGseA~e~Aik~ar~~t~~~~ii~ 189 (447)
.++|.+|+.+... . +.. ....|......+|++++++++.. +..++ ++||++|+..++.... .+++.|++
T Consensus 45 ~~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~g~--e~alv~p~~~sGt~Ai~~al~all--~pGD~Vl~ 120 (427)
T 3i16_A 45 QLKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNT--ESALVRPHFVNGTHALGAALFGNL--RPGNTMLS 120 (427)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTC--SEEEEETTCCSHHHHHHHHHHHHC--CTTCEEEE
T ss_pred HHHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHhCC--cceEEeCCCccHHHHHHHHHHHHh--CCCCEEEE
Confidence 3677777765421 1 111 11235567788999999999864 33344 8999999999987542 35678888
Q ss_pred Ec-CCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEcc----cc
Q 013235 190 LR-NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSES----IQ 264 (447)
Q Consensus 190 ~~-~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Ep----i~ 264 (447)
.+ +.|++..... ....... .......|+.....|.... ...| .+++++.+.+. .++.+|++++ ..
T Consensus 121 ~~~~~y~~~~~~~-g~~~~~~-~~~l~~~G~~~~~v~~~~~--g~~D----~e~l~~~l~~~--~~tklV~i~~s~~~p~ 190 (427)
T 3i16_A 121 VCGEPYDTLHDVI-GITENSN-MGSLKEFGINYKQVDLKED--GKPN----LEEIEKVLKED--ESITLVHIQRSTGYGW 190 (427)
T ss_dssp SSSSCCGGGHHHH-TCSCCCS-SCCTGGGTCEEEECCCCTT--SSCC----HHHHHHHHHTC--TTEEEEEEECSCCSSS
T ss_pred eCCCccHHHHHHH-hccccch-HHHHHHcCCEEEEecCccC--CCcC----HHHHHHHhhCC--CCCEEEEEEcCCCCCC
Confidence 87 6665543211 1111000 0001112444333332111 1134 57788777631 3678999999 77
Q ss_pred CCCceeeCCCChHHHHHHHHHH--hCCEEEEeccccCccccCCCcccccccCCCCCEE--EeeccccCC--ccccccccC
Q 013235 265 GVGGIIELAPGYLPAVYKSIKK--AGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIV--TMAKGIGNG--IPLGAVVTT 338 (447)
Q Consensus 265 ~~gG~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDiv--t~sK~lg~G--~pigav~~~ 338 (447)
++.|.+.+ +++|.++|++ +|+++|+||+|..+.... . ......|++ +++|.++++ ...|+++++
T Consensus 191 nptg~i~d----l~~i~~la~~~~~g~~livD~a~~~~~~~~-~-----p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~ 260 (427)
T 3i16_A 191 RRALLIED----IKSIVDCVKNIRKDIICFVDNCYGEFMDTK-E-----PTDVGADLIAGSLIKNIGGGIAPTGGYLAGT 260 (427)
T ss_dssp SCCCCHHH----HHHHHHHHHHHCTTSEEEEECTTTTTSSSS-C-----GGGGTCSEEEEETTSGGGTTTCCSCEEEEEC
T ss_pred CCcccHHH----HHHHHHHHHHhCCCCEEEEECCCccccccC-C-----ccccCCeEEEecCcccCCCCCCceEEEEEEC
Confidence 88887766 9999999999 999999999996442111 1 111234777 578999874 346889999
Q ss_pred HHHHHhhcCCcccccCC--CCh-HH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeec-----ce
Q 013235 339 PEIAEVLTRRNYFNTFG--GNP-VC-TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGR-----GF 409 (447)
Q Consensus 339 ~~i~~~l~~~~~~~T~~--~np-~a-~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~-----Gl 409 (447)
+++++.+........++ ..| +. +..++..|+.+ +...++..+...++.+.|+++ +.- -.++. .+
T Consensus 261 ~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~-V~p~~~~~~~~~ 333 (427)
T 3i16_A 261 KDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLFLA--PHISMEALKGAILCSRIMELA----GFE-VMPKYDEKRSDI 333 (427)
T ss_dssp HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCE-EESCTTSCCSSS
T ss_pred HHHHHHHHHhcccCccCccCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhC----CCe-ecCCCCCCCccE
Confidence 99998876521111111 112 32 33334444332 345566777777777777665 221 12233 33
Q ss_pred eEEEEEeeCCCCCCCCHHHHHHHHHHHHhCC
Q 013235 410 LLGVEFVTDRQLKTPAKAETLYIMDKMKGIC 440 (447)
Q Consensus 410 ~~giel~~~~~~~~p~~~~~~~~~~~l~~~G 440 (447)
++.|++. +.+.+.++++.|....
T Consensus 334 i~~i~l~--------~~~~~~~f~~~l~~~~ 356 (427)
T 3i16_A 334 IQSIKFN--------DKDKLIEFCKGIQTGS 356 (427)
T ss_dssp CEEEECS--------SHHHHHHHHHHHHHTC
T ss_pred EEEEEEC--------CHHHHHHHHHHHhhcC
Confidence 8888874 2345778888887753
No 212
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.56 E-value=5.6e-13 Score=139.10 Aligned_cols=232 Identities=13% Similarity=0.045 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhh-------cCC----C-eEEEEcCCcccCchhhhhccCCCC
Q 013235 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY-------TGC----N-DIISLRNAYHGNAAGTMGATAQSN 209 (447)
Q Consensus 142 ~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~-------t~~----~-~ii~~~~~yHG~~~~~~~~t~~~~ 209 (447)
...++.++|+++++.+.+.++|++||||||..|++.+|.+ .|. + .|++.+. .|.....+....+..
T Consensus 149 le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~-~h~s~~~~~~~~g~g- 226 (515)
T 2jis_A 149 MEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKE-CHYSIQKGAAFLGLG- 226 (515)
T ss_dssp HHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETT-SCTHHHHHHHHTTSC-
T ss_pred HHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCC-ccHHHHHHHHHcCCC-
Confidence 3456777788888655568999999999999999998743 131 2 4555544 455555444333210
Q ss_pred ccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHh
Q 013235 210 WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKA 287 (447)
Q Consensus 210 ~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~ 287 (447)
...+..++... .+..| .++|++.++.. ...++++|++...++..|.+.+ +++|.++|++|
T Consensus 227 ------~~~v~~v~~~~----~~~~d----~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I~~la~~~ 288 (515)
T 2jis_A 227 ------TDSVRVVKADE----RGKMV----PEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAIADVCQRH 288 (515)
T ss_dssp ------GGGEEEECBCT----TSCBC----HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHH
T ss_pred ------CCcEEEEecCC----CCcCC----HHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHHHHHHHHc
Confidence 01233444321 12234 56677666531 1125788899888888888876 99999999999
Q ss_pred CCEEEEeccccCccccCCCcccccccCC-CCCEEEe--eccccCCccccccccCHH--HHHh-hc---CCc-c-------
Q 013235 288 GGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTM--AKGIGNGIPLGAVVTTPE--IAEV-LT---RRN-Y------- 350 (447)
Q Consensus 288 g~llI~DEv~tGfgr~G~~~~~~~~~gv-~pDivt~--sK~lg~G~pigav~~~~~--i~~~-l~---~~~-~------- 350 (447)
|+++++|++|+++.... ..+.....++ .+|++++ .|.+++++++|+++++++ +++. +. ... .
T Consensus 289 g~~l~vD~a~~~~~~~~-~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~ 367 (515)
T 2jis_A 289 GLWLHVDAAWGGSVLLS-QTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDV 367 (515)
T ss_dssp TCEEEEEETTGGGGGGC-TTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCG
T ss_pred CCeEEEehhhhhHHHhC-hhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccc
Confidence 99999999999876654 2222233455 7899987 799887778999998866 6553 11 100 0
Q ss_pred ---cccCC------CChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 013235 351 ---FNTFG------GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTAL 394 (447)
Q Consensus 351 ---~~T~~------~np~a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l 394 (447)
..++. ...+++.++++++....-+++.++..++.++|.+.|+++
T Consensus 368 ~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~ 420 (515)
T 2jis_A 368 ALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKR 420 (515)
T ss_dssp GGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 01111 113444444444432111345667777788888877664
No 213
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.54 E-value=6.5e-14 Score=138.39 Aligned_cols=276 Identities=9% Similarity=0.008 Sum_probs=158.0
Q ss_pred CCHHHHHHHHHHHHhc---c---ccc-cccc--chHHHHHHHHHHHhCCCC-CceEEEcCCH-HHHHHHHHHHHHhhcCC
Q 013235 116 CHPYVVDSIVNQIKRI---Q---HST-VLYL--NHAIADFAEALASKMPGN-LKVVFFTNSG-TEANELAIMMARLYTGC 184 (447)
Q Consensus 116 ~~p~v~~A~~~~l~~~---~---~~~-~~~~--~~~~~elae~L~~~~~~~-~~~v~~~~sG-seA~e~Aik~ar~~t~~ 184 (447)
.+|.|.+|+.+.++.. . +.. .+++ .+...+++++|+++++.. .+.|+|++++ ++|+++++.......++
T Consensus 14 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~~~ 93 (360)
T 1w23_A 14 LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTI 93 (360)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCE
T ss_pred CCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCCCc
Confidence 6799999999887542 0 000 0111 235678999999988654 3578899887 99999988754321112
Q ss_pred CeEEEEcCCcccCchhhhhccCCCCccccccCCC-eEeecCCCCcCCCCCCChHHHHHHHHH-HHHccCCCCeEEEEEcc
Q 013235 185 NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG-VHHALNPDPYRGVFGADGEMYAKDVQD-LIDFGTSGHVAGFLSES 262 (447)
Q Consensus 185 ~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g-~~~~~~p~~~~~~~~~d~~~~~~~le~-~i~~~~~~~~aavi~Ep 262 (447)
.+.|....-.|.. ...... .| +..++.. +..+ + .| .+++++ .+ ..++.+|++..
T Consensus 94 g~~vi~~~~~~~~-~~~~~~------------~g~~~~v~~~-~~~~-~-~d----~~~l~~~~i----~~~~k~v~~~~ 149 (360)
T 1w23_A 94 GNYVLTGSWSEKA-LKEAKL------------LGETHIAAST-KANS-Y-QS----IPDFSEFQL----NENDAYLHITS 149 (360)
T ss_dssp EEEEECSHHHHHH-HHHHHT------------TSEEEEEEEC-GGGT-S-CS----CCCGGGCCC----CTTEEEEEEES
T ss_pred ccEEEecchhHHH-HHHHHH------------hCCeEEeecc-cccC-c-CC----ccchHhhcc----CCCCCEEEEeC
Confidence 2233322212211 111110 12 1222211 0001 1 12 233444 33 23678888888
Q ss_pred ccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEe--eccccCCccccccccCHH
Q 013235 263 IQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIPLGAVVTTPE 340 (447)
Q Consensus 263 i~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~pigav~~~~~ 340 (447)
.++++|.+.+ +++++||+++|+||+|+.+...- ....+ |++++ +|.++. ..+|+++++++
T Consensus 150 ~~nptG~~~~---------~i~~~~~~~li~D~a~~~~~~~~----~~~~~----di~~~s~sK~~~~-~G~G~~~~~~~ 211 (360)
T 1w23_A 150 NNTIYGTQYQ---------NFPEINHAPLIADMSSDILSRPL----KVNQF----GMIYAGAQKNLGP-SGVTVVIVKKD 211 (360)
T ss_dssp EETTTTEECS---------SCCCCCSSCEEEECTTTTTSSCC----CGGGC----SEEEEETTTTTSC-TTCEEEEEEHH
T ss_pred CCCCcceecc---------cccccCCceEEEechhhcCCCCc----CcccC----CEEEEEcccccCC-CCcEEEEEcHH
Confidence 8888998764 12238999999999997543221 12222 77765 499973 24899999999
Q ss_pred HHHhhcCCc-----------ccccCC-CChHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHhcC-Ceee
Q 013235 341 IAEVLTRRN-----------YFNTFG-GNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLTALKDKYG-IIGD 403 (447)
Q Consensus 341 i~~~l~~~~-----------~~~T~~-~np~a~aaala~L~~i~~~----~l~~~~~~~g~~l~~~L~~l~~~~~-~i~~ 403 (447)
+++.+.... ...+++ .|..+++++.++|+.++++ ++.++.+++.+++.+.|+++ + +...
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~ 287 (360)
T 1w23_A 212 LLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDES----NGFYVG 287 (360)
T ss_dssp HHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTT----TTSSEE
T ss_pred HHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc----cCcccc
Confidence 877664421 112233 3566666777788876543 34566666667776666554 3 2121
Q ss_pred E--e-ec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 404 V--R-GR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 404 v--r-g~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
. . +. +.++++.+. ......++.+.|.++||.+.+
T Consensus 288 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~gi~~~~ 325 (360)
T 1w23_A 288 HAEKGSRSLMNVTFNLR--------NEELNQQFLAKAKEQGFVGLN 325 (360)
T ss_dssp SSCGGGBCSSEEEEECS--------SHHHHHHHHHHHHHTTEESCB
T ss_pred cCCchhccCcEEEEEcC--------CCccHHHHHHHHHHCCeeeec
Confidence 1 2 12 457777762 222356788889999998864
No 214
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.54 E-value=3e-13 Score=139.01 Aligned_cols=265 Identities=14% Similarity=0.003 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHhCCCCCceEEEcCCHH-HHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeE
Q 013235 142 AIADFAEALASKMPGNLKVVFFTNSGT-EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVH 220 (447)
Q Consensus 142 ~~~elae~L~~~~~~~~~~v~~~~sGs-eA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~ 220 (447)
...+++++++++++.+.+ ++|+++|+ .+|..++..++...+++.||+.+..| .....+....+. .+.
T Consensus 134 ~~~~~~~~la~~~g~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h-~s~~~~~~~~G~----------~~~ 201 (456)
T 2z67_A 134 LTNKILESFFKQLGLNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASH-KSPIKAVSFVGM----------NMR 201 (456)
T ss_dssp HHHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCC-HHHHHHHHHTTC----------EEE
T ss_pred HHHHHHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCc-HHHHHHHHHcCC----------Cce
Confidence 445688889998876545 89999999 57777887766543555677777744 443333322211 122
Q ss_pred eecCCCCcCCCCCCChHHHHHHHHHHH-HccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccC
Q 013235 221 HALNPDPYRGVFGADGEMYAKDVQDLI-DFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAG 299 (447)
Q Consensus 221 ~~~~p~~~~~~~~~d~~~~~~~le~~i-~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG 299 (447)
.++.. +....+..| .++|++.+ +.....++.+|++...+++.|.+.+ +++|.++|+++|+++++||++.+
T Consensus 202 ~v~~~-~~~~~~~~d----~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~ 272 (456)
T 2z67_A 202 LVETV-LDGDRVYVP----VEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAI 272 (456)
T ss_dssp EECCE-EETTEEECC----HHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTT
T ss_pred EEEEe-ccCCCCCcC----HHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCcEEEECcchH
Confidence 22210 001112234 56777777 3210124555655544456787766 99999999999999999999876
Q ss_pred ccccCCCcccccccCCCCCEEEe--eccccCCcccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhh--
Q 013235 300 FARTGSHFWGFEAHGVVPDIVTM--AKGIGNGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD-- 374 (447)
Q Consensus 300 fgr~G~~~~~~~~~gv~pDivt~--sK~lg~G~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~-- 374 (447)
+.. |......+.....+|++++ .|.+++++.+|++++ ++++++.+..... ....+++ ..++.+++..+.++
T Consensus 273 ~~~-g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~-g~~~~~~--~~~~~aal~~l~~~~~ 348 (456)
T 2z67_A 273 QNN-YYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYP-GRASATP--VVNTLVSLLSMGSKNY 348 (456)
T ss_dssp TCH-HHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSC-SCBCSHH--HHHHHHHHHHHHHHHH
T ss_pred HHH-HhhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCcCCC-CCCCCCH--HHHHHHHHHHHHHHHH
Confidence 532 2000001111116798876 597777788999999 5778776643222 2222332 33344445444333
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCc
Q 013235 375 -KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICA 441 (447)
Q Consensus 375 -~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gv 441 (447)
+..++..++.++|.++|+++..+.+.. -+... .++.+.+..+. . ..++.+.|.++|+
T Consensus 349 ~~~~~~~~~~~~~l~~~L~~~~~~~g~~-v~~~~-~~v~~~~~~~~----~----~~~l~~~L~~~gi 406 (456)
T 2z67_A 349 LELVKNQKNSKKLLDELLNDLSKKTGGK-FLDVE-SPIASCISVNS----D----PVEIAAKLYNLRV 406 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCC-BCCCC-CSSEEEEECSS----C----HHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCE-ecCCC-CeEEEEEeccc----H----HHHHHHHHHHcCC
Confidence 456778888899999988874322211 11112 44555553211 0 3467888888886
No 215
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.52 E-value=4.6e-13 Score=138.70 Aligned_cols=302 Identities=14% Similarity=0.060 Sum_probs=166.6
Q ss_pred EEEecCCcccccCCCCCHHHHHHHHHHHHhc---cccccc-cc-ch----HHHHHHHHHHHhCCCCCc---eEEEcCCHH
Q 013235 101 YLDAFGGIATVCCGHCHPYVVDSIVNQIKRI---QHSTVL-YL-NH----AIADFAEALASKMPGNLK---VVFFTNSGT 168 (447)
Q Consensus 101 ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~---~~~~~~-~~-~~----~~~elae~L~~~~~~~~~---~v~~~~sGs 168 (447)
.|++.++.. ..+|.|.+|+.+.+... ++...+ |. .+ ...++++++++.++.+.+ ..+..+||+
T Consensus 46 ~i~L~a~e~-----~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs 120 (483)
T 1rv3_A 46 GLELIASEN-----FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS 120 (483)
T ss_dssp SEECCTTCC-----CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH
T ss_pred CeEEEcCCC-----CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH
Confidence 356555432 35799999998877642 111111 11 12 233455888888865543 224667888
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCC--eEeecCCCCcCCCCCCChHHHHHHHHHH
Q 013235 169 EANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG--VHHALNPDPYRGVFGADGEMYAKDVQDL 246 (447)
Q Consensus 169 eA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g--~~~~~~p~~~~~~~~~d~~~~~~~le~~ 246 (447)
+||.++++.. ..++++|++.+..|.|...-.... ++......| +..++++... ..+..| .++|++.
T Consensus 121 ~an~~~~~al--l~pGD~Vl~~~~~~~~~~~~~~~~-----~~~~v~~~G~~~~~v~~~~~~-~~~~iD----~d~le~~ 188 (483)
T 1rv3_A 121 PANFAVYTAL--VEPHGRIMGLDLPDGGHLTHGFMT-----DKKKISATSIFFESMAYKVNP-DTGYID----YDRLEEN 188 (483)
T ss_dssp HHHHHHHHHH--TCTTCEEEEECGGGTCCGGGCCBC-----SSCBCSHHHHHSEEEEECBCT-TTCSBC----HHHHHHH
T ss_pred HHHHHHHHHh--cCCCCEEEEecCccCcCcchhhhh-----cccCcccccceEEEEECcccc-CCCcCC----HHHHHHH
Confidence 9999888754 346688999988776553211100 000000011 3334332110 112234 6778887
Q ss_pred HHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCCEEEee--
Q 013235 247 IDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVTMA-- 323 (447)
Q Consensus 247 i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pDivt~s-- 323 (447)
+... ++.+|++ ...+.+ .+.+ +++|+++|+++|++||+||+|. |+-..|.+.+.+. ..|+++++
T Consensus 189 i~~~---~tklIi~-~~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~----~~div~~s~~ 255 (483)
T 1rv3_A 189 ARLF---HPKLIIA-GTSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE----HCHVVTTTTH 255 (483)
T ss_dssp HHHH---CCSEEEE-CCSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG----TCSEEEEESS
T ss_pred Hhhc---CCcEEEE-eCCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC----CCcEEEecCc
Confidence 7632 4457777 444444 4443 9999999999999999999985 3322231111111 35888654
Q ss_pred ccccCCccccccccCHH---------------HHHhhcCCcccccCCC-ChHHHHHHHHHHHHHhh---hhHHHHHHHHH
Q 013235 324 KGIGNGIPLGAVVTTPE---------------IAEVLTRRNYFNTFGG-NPVCTAAGHAVLKVIQK---DKLQNNAHVVG 384 (447)
Q Consensus 324 K~lg~G~pigav~~~~~---------------i~~~l~~~~~~~T~~~-np~a~aaala~L~~i~~---~~l~~~~~~~g 384 (447)
|.++ |.+.|+++++++ +.+.+.........++ +...+++..++|+.+.+ +++.+++.++.
T Consensus 256 K~l~-GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~ 334 (483)
T 1rv3_A 256 KTLR-GCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANC 334 (483)
T ss_dssp GGGC-CCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred ccCC-CCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 9985 567799988764 3333321111111233 23334444456776643 34667777888
Q ss_pred HHHHHHHHHHHHhcCCeeeEeecc-eeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235 385 SYLKERLTALKDKYGIIGDVRGRG-FLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF 444 (447)
Q Consensus 385 ~~l~~~L~~l~~~~~~i~~vrg~G-l~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~ 444 (447)
++|.+.|.++ .+.++. .|.+ .+..+.+.... - ...++.+.|.+.||.+.
T Consensus 335 ~~l~~~L~~~--g~~~~~--~~~~~~~~~v~~~~~g----~---~~~~~~~~L~~~gI~v~ 384 (483)
T 1rv3_A 335 RALSAALVEL--GYKIVT--GGSDNHLILVDLRSKG----T---DGGRAEKVLEACSIACN 384 (483)
T ss_dssp HHHHHHHHHT--TCEEGG--GSCSSSEEEEEGGGGT----C---CHHHHHHHHHHTTEECE
T ss_pred HHHHHHHHhc--CCEecc--CCCCCceEEEeccCCC----C---CHHHHHHHHHhCCcEEe
Confidence 8888888765 332221 1211 34455553211 0 13456777888999987
No 216
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.52 E-value=1.2e-13 Score=140.36 Aligned_cols=204 Identities=11% Similarity=0.027 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhCC---CCC--ceEEEcCCHHHHHHHHHHHHHh-h-cCCCeEEE
Q 013235 118 PYVVDSIVNQIKRIQHSTVLY-LNHAIADFAEALASKMP---GNL--KVVFFTNSGTEANELAIMMARL-Y-TGCNDIIS 189 (447)
Q Consensus 118 p~v~~A~~~~l~~~~~~~~~~-~~~~~~elae~L~~~~~---~~~--~~v~~~~sGseA~e~Aik~ar~-~-t~~~~ii~ 189 (447)
|.|.+|.++.++.. .+..| +.....+|.+.+++++- ... ....-+.+|+.|...++.+... + .+++.|++
T Consensus 65 ~~Vk~A~~~~~~~~--~~~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~i 142 (420)
T 4h51_A 65 RVVRKAEQLLLDMN--LDYEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYL 142 (420)
T ss_dssp HHHHHHHHHHHHTT--CCCCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEE
T ss_pred HHHHHHHHHHhcCC--CCCCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEE
Confidence 77888876655442 11123 34455667776666531 111 2334578999999988876543 3 35678999
Q ss_pred EcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCce
Q 013235 190 LRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGI 269 (447)
Q Consensus 190 ~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~ 269 (447)
.+++|-.+.......+... +...++.+ ...++.| .+.+.+.+....+ +...++..+-++++|.
T Consensus 143 p~P~w~~y~~i~~~aG~~~----------V~~~~~~~--~~~~~~d----~~~~~~~l~~~~~-~~~vll~~~p~NPtG~ 205 (420)
T 4h51_A 143 SDPTWPNHYGVVKAAGWKN----------ICTYAYYD--PKTVSLN----FEGMKKDILAAPD-GSVFILHQCAHNPTGV 205 (420)
T ss_dssp EESCCTHHHHHHHHTTCCC----------EEEEECEE--GGGTEEC----HHHHHHHHHHSCS-SCEEEEESSSCTTTCC
T ss_pred ecCCchhHHHHHHHcCCeE----------EEeecccc--ccccCCC----HHHHHHHHhccCC-CcEEEEeCCCCCCCCC
Confidence 9999965544333332211 11111111 1112223 3444444544433 4456666666777776
Q ss_pred eeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCC--ccccc-ccCCCCCEE---Eeecccc-CCccccccccCHHH
Q 013235 270 IELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH--FWGFE-AHGVVPDIV---TMAKGIG-NGIPLGAVVTTPEI 341 (447)
Q Consensus 270 ~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~--~~~~~-~~gv~pDiv---t~sK~lg-~G~pigav~~~~~i 341 (447)
+. +++.+++|.++|+++++++|.||+|.||...+.. .+... ..+..+.++ +|||.++ .|+|+|++++..+.
T Consensus 206 ~~-~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~ 283 (420)
T 4h51_A 206 DP-SQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKD 283 (420)
T ss_dssp CC-CHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSC
T ss_pred CC-CHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccC
Confidence 65 8999999999999999999999999999754311 11111 112223333 6899998 59999998875443
No 217
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.50 E-value=3.8e-13 Score=135.31 Aligned_cols=276 Identities=8% Similarity=-0.035 Sum_probs=160.1
Q ss_pred CCHHHHHHHHHHHHhccccccccc--chHHHHHHHHHHHhCCCC-CceEEE-cCCHHHHHHHHHHHHHhhcCCCeEEEEc
Q 013235 116 CHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPGN-LKVVFF-TNSGTEANELAIMMARLYTGCNDIISLR 191 (447)
Q Consensus 116 ~~p~v~~A~~~~l~~~~~~~~~~~--~~~~~elae~L~~~~~~~-~~~v~~-~~sGseA~e~Aik~ar~~t~~~~ii~~~ 191 (447)
.+|+|.+|+.+...........++ .+...+++++|++.++.+ .++++| ++||++|++.+++... ++. ++...
T Consensus 51 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~---~~g-v~~v~ 126 (398)
T 2fyf_A 51 VRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLI---DKR-SLHLT 126 (398)
T ss_dssp CCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTC---SSC-EEEEE
T ss_pred CCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhc---CCC-eEEEe
Confidence 678999988763111111112222 235678999999998764 247888 9999999999998653 222 33336
Q ss_pred CCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceee
Q 013235 192 NAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIE 271 (447)
Q Consensus 192 ~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~ 271 (447)
.++|+.......... .| ...+..++.++. +..+. + + ..++.+|++...++++|.+.
T Consensus 127 ~~~~~~~~~~~~~~~--~~-----g~~~~~v~~~~g----~~~~~-----~----i----~~~~~~v~~~~~~nptG~~~ 182 (398)
T 2fyf_A 127 YGEFSAKFASAVSKN--PF-----VGEPIIITSDPG----SAPEP-----Q----T----DPSVDVIAWAHNETSTGVAV 182 (398)
T ss_dssp CSHHHHHHHHHHHHC--TT-----SCCCEEEECCTT----CCCCC-----C----C----CTTCSEEEEESEETTTTEEC
T ss_pred CCHHHHHHHHHHHHh--CC-----CCceEEEecCCC----CCCCc-----c----c----cCCCCEEEEeCcCCCcceec
Confidence 677754322111110 00 012223332211 11110 0 1 12556777777788889887
Q ss_pred CCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHHHhhcCC-
Q 013235 272 LAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIAEVLTRR- 348 (447)
Q Consensus 272 ~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~~~l~~~- 348 (447)
+. ++|.++ +|+++|+||+|+.+...- ..+ .+|+++++ |.++.+-.+|++++++++++.+...
T Consensus 183 ~~----~~i~~~---~~~~vivD~a~~~~~~~~----~~~----~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~ 247 (398)
T 2fyf_A 183 AV----RRPEGS---DDALVVIDATSGAGGLPV----DIA----ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIA 247 (398)
T ss_dssp CC----CCCTTC---C-CEEEEECTTTTTTSCC----CGG----GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHH
T ss_pred ch----HHhhhh---cCCeEEEEeccccCCccc----Ccc----cCcEEEEecCcccCCCCceEEEEECHHHHHHhhccc
Confidence 63 333333 899999999997543211 111 26888765 9998643489999999988766210
Q ss_pred -------c------------ccccC-CCChHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHhcCCeeeE
Q 013235 349 -------N------------YFNTF-GGNPVCTAAGHAVLKVIQKD----KLQNNAHVVGSYLKERLTALKDKYGIIGDV 404 (447)
Q Consensus 349 -------~------------~~~T~-~~np~a~aaala~L~~i~~~----~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v 404 (447)
. ...++ +.|..+++++.++|+.+.++ ++.++.+++.+++.+.|+++ +.+.-+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~ 323 (398)
T 2fyf_A 248 ATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQER----PYTTPF 323 (398)
T ss_dssp HTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHS----TTEEES
T ss_pred ccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHc----CCceec
Confidence 0 01233 34566677777888876543 34566667777777777654 212111
Q ss_pred ---e-ec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235 405 ---R-GR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ 446 (447)
Q Consensus 405 ---r-g~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~ 446 (447)
+ +. +.++.+.+.+. ....++.+.|.++||++++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~gI~v~~g 362 (398)
T 2fyf_A 324 VTDPGLRSQVVGTIDFVDD--------VDAGTVAKILRANGIVDTEP 362 (398)
T ss_dssp CCSGGGBCSSEEEEEECTT--------SCHHHHHHHHHHTTCBCCSC
T ss_pred cCChhhcCCcEEEEECCCC--------CCHHHHHHHHHHCCcEEecC
Confidence 1 12 34788887321 01457889999999998653
No 218
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.50 E-value=3.3e-13 Score=139.52 Aligned_cols=287 Identities=13% Similarity=0.072 Sum_probs=150.5
Q ss_pred CCHHHHHHHHHHHH-hccc--cccccc--chHHHHHH----HHHHHhCCCCCc---eEEEcCCHHHHHHHHHHHHHhhcC
Q 013235 116 CHPYVVDSIVNQIK-RIQH--STVLYL--NHAIADFA----EALASKMPGNLK---VVFFTNSGTEANELAIMMARLYTG 183 (447)
Q Consensus 116 ~~p~v~~A~~~~l~-~~~~--~~~~~~--~~~~~ela----e~L~~~~~~~~~---~v~~~~sGseA~e~Aik~ar~~t~ 183 (447)
.+|+|.+|+...+. ++.+ ...+|. ++...++. ++++++++...+ ..++++||++||.++++... .+
T Consensus 66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~--~p 143 (490)
T 2a7v_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL--QP 143 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC--CS
T ss_pred CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHc--CC
Confidence 47999999988764 3322 122221 12222333 888898865543 34567799999999998542 35
Q ss_pred CCeEEEEcCCcccCch-h------hhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeE
Q 013235 184 CNDIISLRNAYHGNAA-G------TMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA 256 (447)
Q Consensus 184 ~~~ii~~~~~yHG~~~-~------~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a 256 (447)
+++|++.+..|.|... + ...+++. .+..++++... ..+..| .++|++.+... ++.
T Consensus 144 GD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~----------~~~~~~~~vd~-~~~~iD----~d~le~~l~~~---~~k 205 (490)
T 2a7v_A 144 HDRIMGLDLPDGGHLTHGYMSDVKRISATSI----------FFESMPYKLNP-KTGLID----YNQLALTARLF---RPR 205 (490)
T ss_dssp CEECCC-----------------------------------------CCBCT-TTCSBC----HHHHHHHHHHH---CCS
T ss_pred CCEecccCccccccccchhhhcchhHHHcCC----------eEEEEeccccc-ccCCcC----HHHHHHHHhhc---CCc
Confidence 6778877766543221 1 1111110 11111211000 012234 67788777543 234
Q ss_pred EEEEc-cccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCCEEE--eeccccCCccc
Q 013235 257 GFLSE-SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPDIVT--MAKGIGNGIPL 332 (447)
Q Consensus 257 avi~E-pi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pDivt--~sK~lg~G~pi 332 (447)
+|++. |.++. ..+ +++|+++|++||++||+|++|. |+...|.....++ ..|+++ ++|+++ |.+.
T Consensus 206 lIi~~~s~~~~---~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~----~aDiv~~S~hK~l~-Gp~G 273 (490)
T 2a7v_A 206 LIIAGTSAYAR---LID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIVTTTTHKTLR-GARS 273 (490)
T ss_dssp EEEECCSSCCS---CCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG----TCSEEEEESSGGGC-SCSC
T ss_pred EEEEcCCCCCC---ccc----HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC----CCCEEEECCcccCc-cccc
Confidence 55654 44432 222 8999999999999999999975 3322331111111 258875 679995 4456
Q ss_pred cccccCHH---------------HHHhhcCCcccccCCCC-hHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHH
Q 013235 333 GAVVTTPE---------------IAEVLTRRNYFNTFGGN-PVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTA 393 (447)
Q Consensus 333 gav~~~~~---------------i~~~l~~~~~~~T~~~n-p~a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~ 393 (447)
|+++++++ +.+.+.......+.++. +..+++..++++.+.+ +++.+++.++.++|.+.|.+
T Consensus 274 G~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~ 353 (490)
T 2a7v_A 274 GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE 353 (490)
T ss_dssp EEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77887764 33444332223344443 3334444446665533 35678888899999999887
Q ss_pred HHHhcCCeeeEeec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 394 LKDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 394 l~~~~~~i~~vrg~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+ .+.++. .+. ..++.+.+.... ....++.+.|.+.||.+..
T Consensus 354 ~--G~~v~~--~~t~t~lv~vdl~~~g-------~~~~~~~~~L~~~GI~v~~ 395 (490)
T 2a7v_A 354 R--GYSLVS--GGTDNHLVLVDLRPKG-------LDGARAERVLELVSITANK 395 (490)
T ss_dssp T--TCEEGG--GSCSSSEEEEECTTTT-------CCHHHHHHHHHHTTEECEE
T ss_pred c--CcEEec--CCCCCeEEEEEeCCCC-------CCHHHHHHHHHhCCeEEec
Confidence 4 332221 111 245556553211 0134577788889999864
No 219
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.50 E-value=1.3e-12 Score=129.49 Aligned_cols=290 Identities=11% Similarity=0.061 Sum_probs=165.7
Q ss_pred CCeEEEecCCcccccCCCCCHHHHHHHHHHHHhccc-------cccccc--chHHHHHHHHHHHhCCCCCc-e-EEEcCC
Q 013235 98 GRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQH-------STVLYL--NHAIADFAEALASKMPGNLK-V-VFFTNS 166 (447)
Q Consensus 98 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~-------~~~~~~--~~~~~elae~L~~~~~~~~~-~-v~~~~s 166 (447)
++.|+|..+. .. .+|+|.+|+.+.+..... ....++ .+...++++++++.++.+.+ + +++++|
T Consensus 3 ~~~~l~~~~~-----~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g 76 (362)
T 2c0r_A 3 ERAYNFNAGP-----AA-LPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGG 76 (362)
T ss_dssp CCCEECCSSS-----CC-CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSH
T ss_pred cceeeccCCC-----CC-CCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCC
Confidence 4566664432 22 689999999988754210 011222 23467889999998876542 4 577899
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEcCCcccCch-hhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHH
Q 013235 167 GTEANELAIMMARLYTGCNDIISLRNAYHGNAA-GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD 245 (447)
Q Consensus 167 GseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~-~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~ 245 (447)
|++|+..+++... .++++|++...++++... ......+ .+..++.+.. ..++.+.+ .++++
T Consensus 77 ~t~a~~~~~~~l~--~~gd~vl~~~~~~~~~~~~~~~~~~g-----------~~~~v~~~~~--~~~~~~~~--~~~~~- 138 (362)
T 2c0r_A 77 ASTQFAMIPMNFL--KEGQTANYVMTGSWASKALKEAKLIG-----------DTHVAASSEA--SNYMTLPK--LQEIQ- 138 (362)
T ss_dssp HHHHHHHHHHHHC--CTTCEEEEEECSHHHHHHHHHHHHHS-----------CEEEEEECGG--GTTCSCCC--GGGCC-
T ss_pred chHHHHHHHHhcC--CCCCeEEEEecCcHhHHHHHHHHHhC-----------CeEEEecccc--cccccCCC--HHHcc-
Confidence 9999999998543 345778877766655321 1111111 1222222100 00111000 11121
Q ss_pred HHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEE--ee
Q 013235 246 LIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVT--MA 323 (447)
Q Consensus 246 ~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt--~s 323 (447)
+ . .++.+|++...++.+|.+..+ +++| +|+++|+||+|. +|.. ....+. . |+++ ++
T Consensus 139 -i---~-~~t~~v~~~~~~n~tG~~~~~---l~~i------~~~~vivD~a~~-~~~~---~~~~~~--~--d~~~~s~~ 196 (362)
T 2c0r_A 139 -L---Q-DNAAYLHLTSNETIEGAQFKA---FPDT------GSVPLIGDMSSD-ILSR---PFDLNQ--F--GLVYAGAQ 196 (362)
T ss_dssp -C---C-TTEEEEEEESEETTTTEECSS---CCCC------TTSCEEEECTTT-TTSS---CCCGGG--C--SEEEEETT
T ss_pred -c---C-CCcCEEEEeCCcCccceeccc---cccc------CCCEEEEEChhh-ccCC---ccchhH--C--cEEEEecc
Confidence 1 2 256777777667888886322 4444 899999999996 3311 111221 2 7764 67
Q ss_pred cccc-CCccccccccCHHHHHhhcCCc------------ccccCCCChHHHHHHHHHHHHHhh----hhHHHHHHHHHHH
Q 013235 324 KGIG-NGIPLGAVVTTPEIAEVLTRRN------------YFNTFGGNPVCTAAGHAVLKVIQK----DKLQNNAHVVGSY 386 (447)
Q Consensus 324 K~lg-~G~pigav~~~~~i~~~l~~~~------------~~~T~~~np~a~aaala~L~~i~~----~~l~~~~~~~g~~ 386 (447)
|.+| .| +|++++++++++.+.... ....++.|+.+++++.++|+.+++ ++..++.+++.++
T Consensus 197 K~~g~~G--~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~ 274 (362)
T 2c0r_A 197 KNLGPSG--VTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASL 274 (362)
T ss_dssp TTTCCSS--CEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred ccccCcC--cEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9997 35 799999998876654310 012345677888888899988765 3455666666666
Q ss_pred HHHHHHHHHHhc-CCeee--EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 387 LKERLTALKDKY-GIIGD--VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 387 l~~~L~~l~~~~-~~i~~--vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+.+.|+++- .+ ..... .++ +.++.+.+ |......++.+.|.++||.+.+
T Consensus 275 l~~~L~~~~-~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~L~~~gi~~~~ 326 (362)
T 2c0r_A 275 IYDAIDQSG-GFYRGCVDVDSRS-DMNITFRL--------ASEELEKEFVKASEQEGFVGLK 326 (362)
T ss_dssp HHHHHHTST-TSSEESSCGGGBC-SSEEEEEC--------SCHHHHHHHHHHHHHTTEESCB
T ss_pred HHHHHHHcC-CccccCCChHHcC-CcEEEEEc--------CCcchHHHHHHHHHHCCCeecc
Confidence 666665541 01 11110 112 33445554 2223456788899999998764
No 220
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.47 E-value=5.3e-14 Score=141.63 Aligned_cols=240 Identities=12% Similarity=0.075 Sum_probs=139.4
Q ss_pred HHHHHHHHHhCC------CCCceEEEcCCHHHHHHHHHHHHHhhcCCC----eEEEEcCCcccCchhhhhccCCCCcccc
Q 013235 144 ADFAEALASKMP------GNLKVVFFTNSGTEANELAIMMARLYTGCN----DIISLRNAYHGNAAGTMGATAQSNWKFN 213 (447)
Q Consensus 144 ~elae~L~~~~~------~~~~~v~~~~sGseA~e~Aik~ar~~t~~~----~ii~~~~~yHG~~~~~~~~t~~~~~~~~ 213 (447)
.+|.+.+++++. ...++|++++++++|+..+++.... +++ .|++.+++|.+....+.... ..
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~--~Gd~~~~~Vlv~~P~y~~~~~~~~~~g-~~----- 142 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSS--LARSQPVSVVAAAPFYSTYVEETTYVR-SG----- 142 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHH--TSSSSSEEEEECSSCCTHHHHHHHTTC-BT-----
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcC--CCCCCcceEEEcCCCchhHHHHHHHcC-Ce-----
Confidence 667777777653 1225899999999999999986543 445 89999999986554433221 11
Q ss_pred ccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhC--CEE
Q 013235 214 VVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAG--GLC 291 (447)
Q Consensus 214 ~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g--~ll 291 (447)
+..++. | .+.++ .+ ++.++++...++++|.+.. +|.+ ++|+ +++
T Consensus 143 -----~~~~~~----------d----~~~l~------~~-~~k~v~l~~p~NPtG~~~~------~l~~--~~~~~~~~i 188 (391)
T 3bwn_A 143 -----MYKWEG----------D----AWGFD------KK-GPYIELVTSPNNPDGTIRE------TVVN--RPDDDEAKV 188 (391)
T ss_dssp -----TEEEEE----------E----STTCC------CC-SCEEEEEESSCTTTCCCCC------CCC-------CCCEE
T ss_pred -----EEEecC----------C----HHHcC------CC-CCEEEEECCCCCCCchhHH------HHHH--HhhcCCCEE
Confidence 111110 0 01111 02 3445544444566777763 2322 2266 999
Q ss_pred EEeccccCccccCCCccccc-ccCCCCCEEEeecccc-CCcccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHH
Q 013235 292 IADEVQAGFARTGSHFWGFE-AHGVVPDIVTMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVL 368 (447)
Q Consensus 292 I~DEv~tGfgr~G~~~~~~~-~~gv~pDivt~sK~lg-~G~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L 368 (447)
|+||+|.. + +...+. ..+..--+-+|||.+| .|+++|++++ ++++++.+.......+++.+++++.++.++|
T Consensus 189 i~De~y~~-~----~~~~l~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l 263 (391)
T 3bwn_A 189 IHDFAYYW-P----HYTPITRRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKIL 263 (391)
T ss_dssp EEECTTCS-T----TTSCCCCCBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EEeCCCCC-C----CCCccccCCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 99999962 2 111111 1222222336899998 7999999997 8999888765433446778899999988888
Q ss_pred HHHhh--------hhH----HHHHHHHHHHHHHHHHHHHHhcCCee------e--------EeecceeEEEEEeeCCCCC
Q 013235 369 KVIQK--------DKL----QNNAHVVGSYLKERLTALKDKYGIIG------D--------VRGRGFLLGVEFVTDRQLK 422 (447)
Q Consensus 369 ~~i~~--------~~l----~~~~~~~g~~l~~~L~~l~~~~~~i~------~--------vrg~Gl~~giel~~~~~~~ 422 (447)
+.-.+ ++. .+.++++.+++.+.|++ ++.+. . ++..|+++++++.+.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~---- 335 (391)
T 3bwn_A 264 NVLKETCKSESESENFFKYGREMMKNRWEKLREVVKE----SDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE---- 335 (391)
T ss_dssp HHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHT----CSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS----
T ss_pred hCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHh----CCCcccccCCccccccccccCCCcceEEEecCCcH----
Confidence 75321 223 33344444444444443 32111 0 123466788887421
Q ss_pred CCCHHHHHHHHHHHHhCCceeec
Q 013235 423 TPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 423 ~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
..+.+.|.++||++.+
T Consensus 336 -------~~~~~~l~~~gV~v~p 351 (391)
T 3bwn_A 336 -------TDLVSELRRHKVMSRA 351 (391)
T ss_dssp -------CCHHHHHHHTTEECEE
T ss_pred -------HHHHHHHHHCCEEEcc
Confidence 1355667789999875
No 221
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.47 E-value=8e-12 Score=129.96 Aligned_cols=292 Identities=15% Similarity=0.055 Sum_probs=162.0
Q ss_pred CCCHHHHHHHHHHHHhccccccccc--chHHHHHHHHHHHhCCCC--Cc---eEEEcCCHHHHHHHHHHHHHhh------
Q 013235 115 HCHPYVVDSIVNQIKRIQHSTVLYL--NHAIADFAEALASKMPGN--LK---VVFFTNSGTEANELAIMMARLY------ 181 (447)
Q Consensus 115 h~~p~v~~A~~~~l~~~~~~~~~~~--~~~~~elae~L~~~~~~~--~~---~v~~~~sGseA~e~Aik~ar~~------ 181 (447)
+.+|.+.+++.+.++........++ .....++++.|+++++.+ .+ ...+++||+|||..++..++..
T Consensus 67 ~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~ 146 (502)
T 3hbx_A 67 WMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK 146 (502)
T ss_dssp CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHH
Confidence 3579999998887765322111222 233346677788887544 22 3346999999999999877542
Q ss_pred -cC----CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeE
Q 013235 182 -TG----CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA 256 (447)
Q Consensus 182 -t~----~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~a 256 (447)
.| +..|++.+.++.. ...+....+. .+..++... ..+..| .++|++.+.. ++.
T Consensus 147 ~~G~~~~~~~vi~~~~~h~s-~~~~~~~~G~----------~~~~v~~~~---~~~~~d----~~~l~~~i~~----~t~ 204 (502)
T 3hbx_A 147 AEGKPVDKPNIVTGANVQVC-WEKFARYFEV----------ELKEVKLSE---GYYVMD----PQQAVDMVDE----NTI 204 (502)
T ss_dssp HTTCCCSCCEEEEETTCCHH-HHHHHHHTTC----------EEEEECCBT---TBCSCC----HHHHHHHCCT----TEE
T ss_pred hcCCCCCCcEEEEcCCchHH-HHHHHHHcCc----------eeEEEecCC---CcCcCC----HHHHHHHHhh----CCE
Confidence 02 1267776666543 2222222211 233333211 112234 5677776642 456
Q ss_pred EEEEccccCCCceeeCCCChHHHHHHHHHHh------CCEEEEeccccCccc---cCCCcccccccCCCCCEEEee--cc
Q 013235 257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKA------GGLCIADEVQAGFAR---TGSHFWGFEAHGVVPDIVTMA--KG 325 (447)
Q Consensus 257 avi~Epi~~~gG~~~~~~~~l~~l~~l~~~~------g~llI~DEv~tGfgr---~G~~~~~~~~~gv~pDivt~s--K~ 325 (447)
+|++.-..+++|.+.+ +++|.++|+++ |+++++|++|.|+.. .+...|.+.. ...|+++++ |.
T Consensus 205 ~v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~--~~~D~v~~s~hK~ 278 (502)
T 3hbx_A 205 CVAAILGSTLNGEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRL--PLVKSINVSGHKY 278 (502)
T ss_dssp EEEEEBSCTTTCCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTT
T ss_pred EEEEecCCCCCCcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCC--CCceEEEECcccc
Confidence 6666655556677766 99999999999 999999999987631 2211111111 134766543 76
Q ss_pred ccCCccccccccC-HHHH-HhhcCC-cc------ccc--CCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHH
Q 013235 326 IGNGIPLGAVVTT-PEIA-EVLTRR-NY------FNT--FGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERL 391 (447)
Q Consensus 326 lg~G~pigav~~~-~~i~-~~l~~~-~~------~~T--~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L 391 (447)
+.++..+|+++.+ ++.+ +.+... .+ ..+ ++.+....++..++|+.+..+ +..++..++.++|.+.|
T Consensus 279 l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L 358 (502)
T 3hbx_A 279 GLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGL 358 (502)
T ss_dssp TCCCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666778877765 4433 222110 00 011 222222334444555555444 34566666777777777
Q ss_pred HHHHHhcCCeeeEee--cceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceee
Q 013235 392 TALKDKYGIIGDVRG--RGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFF 444 (447)
Q Consensus 392 ~~l~~~~~~i~~vrg--~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~ 444 (447)
+++ +.+.-+.. ...++.+.+..+.. ....++.+.|.++|+++.
T Consensus 359 ~~~----~~~~~~~~~~~~~~v~f~~~~~~~------~~~~~l~~~L~~~Gi~v~ 403 (502)
T 3hbx_A 359 EKT----ERFNIVSKDEGVPLVAFSLKDSSC------HTEFEISDMLRRYGWIVP 403 (502)
T ss_dssp HTT----TCEEECSCSSSSSEEEEEESSCSS------CCHHHHHHHHHTTTCBCC
T ss_pred HhC----CCEEEEeCCCCceEEEEEecCCCc------CCHHHHHHHHHhCCcEEe
Confidence 654 32222221 34566677643210 013478899999999874
No 222
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.42 E-value=3.1e-11 Score=125.78 Aligned_cols=278 Identities=13% Similarity=0.017 Sum_probs=150.7
Q ss_pred HHHHHHHHhCCCC--CceEEEcCCHHHHHHHHHHHHHhhc-------C----CCeEEEEcCCcccCchhhhhccCCCCcc
Q 013235 145 DFAEALASKMPGN--LKVVFFTNSGTEANELAIMMARLYT-------G----CNDIISLRNAYHGNAAGTMGATAQSNWK 211 (447)
Q Consensus 145 elae~L~~~~~~~--~~~v~~~~sGseA~e~Aik~ar~~t-------~----~~~ii~~~~~yHG~~~~~~~~t~~~~~~ 211 (447)
++++.++++++.+ ...++|++|||+||..|+..++... | .+.+|......|-....+....+...
T Consensus 139 ~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~-- 216 (511)
T 3vp6_A 139 ITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGT-- 216 (511)
T ss_dssp HHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCG--
T ss_pred HHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHcCCCC--
Confidence 3445556655433 3578999999999999999887531 2 23344444445544444433332100
Q ss_pred ccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHcc--CCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCC
Q 013235 212 FNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFG--TSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGG 289 (447)
Q Consensus 212 ~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~--~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~ 289 (447)
..+..++... .+..| .++|++.|... ....+.+|++....++.|.+.+ +++|.++|++||+
T Consensus 217 -----~~~~~v~~d~----~~~~d----~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~----l~~I~~ia~~~~~ 279 (511)
T 3vp6_A 217 -----DNVILIKCNE----RGKII----PADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEKYNL 279 (511)
T ss_dssp -----GGEEEECBCT----TSCBC----HHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC----HHHHHHHHHHHTC
T ss_pred -----CcEEEeecCC----CCccC----HHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc----HHHHHHHHHHcCC
Confidence 0133333221 12234 56777777532 1123778888888888888866 9999999999999
Q ss_pred EEEEeccccCccccCCCcccccccCC-CCCEEEee--ccccCCccccccccCH-HHHHhh-cCC-cccc-----------
Q 013235 290 LCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTMA--KGIGNGIPLGAVVTTP-EIAEVL-TRR-NYFN----------- 352 (447)
Q Consensus 290 llI~DEv~tGfgr~G~~~~~~~~~gv-~pDivt~s--K~lg~G~pigav~~~~-~i~~~l-~~~-~~~~----------- 352 (447)
++++|++|.|...... -+.....|+ ..|+++++ |.++..+..|+++.+. ++.... ... .+..
T Consensus 280 ~lhvD~a~~~~~~~~~-~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~ 358 (511)
T 3vp6_A 280 WLHVDAAWGGGLLMSR-KHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYD 358 (511)
T ss_dssp EEEEEETTGGGGGGCT-TTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGC
T ss_pred EEEEEccchhhHhhCh-hhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccccccC
Confidence 9999999976433221 111122233 46888754 8887655667777654 444432 111 1110
Q ss_pred ----cC-CCChHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCC
Q 013235 353 ----TF-GGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTP 424 (447)
Q Consensus 353 ----T~-~~np~a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p 424 (447)
+. .+.+.......++|+.+.. +++.++..++.+++++.|+++ ..+.++..-.....++.+.+........+
T Consensus 359 ~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~-pg~~l~~~~~p~~~~v~f~~~p~~~~~~~ 437 (511)
T 3vp6_A 359 TGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFNGEPEHTNVCFWYIPQSLRGVP 437 (511)
T ss_dssp CGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-TTEEESSSSCCSSSCEEEEECCGGGSSCC
T ss_pred ccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEecCCCCeEEEEEEEeCccccccc
Confidence 11 1112223333444554433 345677777788888877654 12221211012344445554322110001
Q ss_pred -CH-------HHHHHHHHHHHhCCcee
Q 013235 425 -AK-------AETLYIMDKMKGICALF 443 (447)
Q Consensus 425 -~~-------~~~~~~~~~l~~~Gvlv 443 (447)
.. ....++.+.|+++|+++
T Consensus 438 ~~~~~~~~l~~~~~~l~~~L~~~G~~~ 464 (511)
T 3vp6_A 438 DSPQRREKLHKVAPKIKALMMESGTTM 464 (511)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTSCE
T ss_pred cchhHHHHHHHHHHHHHHHHHhcCCEE
Confidence 10 12346888999999654
No 223
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.38 E-value=3.8e-13 Score=137.09 Aligned_cols=286 Identities=12% Similarity=-0.020 Sum_probs=161.4
Q ss_pred CCCeEEEecCCcccccCCCCCHHHHHHHHHHHHhcccccccccch--H---HHHHHHHHHHhCC------CCCceEEEcC
Q 013235 97 NGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH--A---IADFAEALASKMP------GNLKVVFFTN 165 (447)
Q Consensus 97 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~--~---~~elae~L~~~~~------~~~~~v~~~~ 165 (447)
..+..|||..|... ++ .++.+.+++.+.+.........|... . ..+|.+.|++++. .+.++|++++
T Consensus 54 ~~~~~i~l~~g~~~--~~-~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~ 130 (427)
T 2hox_A 54 IQGCSADVASGDGL--FL-EEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGV 130 (427)
T ss_dssp CTTCCEECCSCCCG--GG-HHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEES
T ss_pred CCCceEEecCcCCC--CC-CCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeC
Confidence 34567888776652 33 34667777776653211111113322 2 4566666666552 3457899999
Q ss_pred CHHHHHHHHHHHHHh------hcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHH
Q 013235 166 SGTEANELAIMMARL------YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMY 239 (447)
Q Consensus 166 sGseA~e~Aik~ar~------~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~ 239 (447)
++++|+..+++.... ..+++.|++..++|.+........+. .. +. |..|
T Consensus 131 G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~-~~------------~~--------~~~d---- 185 (427)
T 2hox_A 131 GVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDK-KG------------YV--------WAGN---- 185 (427)
T ss_dssp HHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCB-TT------------EE--------EEEE----
T ss_pred CHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCC-ee------------ee--------ecCC----
Confidence 999999999986510 22457889999999765544433221 10 00 1112
Q ss_pred HHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCE
Q 013235 240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDI 319 (447)
Q Consensus 240 ~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDi 319 (447)
.++|++.+. + ++.++++...++++|.+.+ +.+ + ++..|.||++-+ ..- .+.... . ..+|
T Consensus 186 ~~~l~~~~~---~-~~k~v~l~~p~NPtG~~~~--~~l-------~--~~~~i~d~~~~~--~~~-s~~~~~-~--~~~i 244 (427)
T 2hox_A 186 AANYVNVSN---P-EQYIEMVTSPNNPEGLLRH--AVI-------K--GCKSIYDMVYYW--PHY-TPIKYK-A--DEDI 244 (427)
T ss_dssp GGGGTTCSC---G-GGEEEEEESSCTTTCCCCC--CSS-------T--TCEEEEECTTCS--TTT-SCCCSC-B--CCSE
T ss_pred HHHHHHhhc---C-CceEEEEcCCCCCcccccH--HHH-------c--CCCEEEeecccC--CCC-CccccC-C--CceE
Confidence 233443332 1 3444544444566777664 332 2 566788887732 100 111111 1 2345
Q ss_pred E--Eeecccc-CCcccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh---------hhHH----HHHHH
Q 013235 320 V--TMAKGIG-NGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK---------DKLQ----NNAHV 382 (447)
Q Consensus 320 v--t~sK~lg-~G~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~---------~~l~----~~~~~ 382 (447)
+ +|||.++ .|+++|++++ ++++++.+.......+++.+++++.++.+.|+...+ +++. +.+++
T Consensus 245 ~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (427)
T 2hox_A 245 LLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRE 324 (427)
T ss_dssp EEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHH
T ss_pred EEEeChhcCCCCCceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHH
Confidence 5 6899998 7999999999 589988886544445577888888888888864321 2222 33333
Q ss_pred HHHHHHHHHHHHHHhcCCee---------------eEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHH-hCCceeec
Q 013235 383 VGSYLKERLTALKDKYGIIG---------------DVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMK-GICALFFS 445 (447)
Q Consensus 383 ~g~~l~~~L~~l~~~~~~i~---------------~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~-~~Gvlv~~ 445 (447)
..++|.+.| ++++.+. .....|+++++++..+ ..++++.|+ ++||++.+
T Consensus 325 ~~~~l~~~L----~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~----------~~~~~~~ll~~~gI~v~p 389 (427)
T 2hox_A 325 RWVNITALL----DQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE----------EDKDCYQTFQNGRINTQN 389 (427)
T ss_dssp HHHHHHHHH----TTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG----------GGCSHHHHHHHTTEECEE
T ss_pred HHHHHHHHH----HhCcCccccccccccccccccccCCCCceEEEEECCCc----------HHHHHHHHHHHCCEEEcC
Confidence 333443333 3332111 1222378888888421 134666765 78999875
No 224
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.32 E-value=3.5e-10 Score=116.85 Aligned_cols=251 Identities=11% Similarity=0.018 Sum_probs=137.5
Q ss_pred eEEEcCCHHHHHHHHHHHHHhhc-------C---------CCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeec
Q 013235 160 VVFFTNSGTEANELAIMMARLYT-------G---------CNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHAL 223 (447)
Q Consensus 160 ~v~~~~sGseA~e~Aik~ar~~t-------~---------~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~ 223 (447)
..+|++|||+||..|+..+|... + ...+|+.....|-....+..+.+. .+..++
T Consensus 147 ~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~----------~~~~v~ 216 (481)
T 4e1o_A 147 GGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLV----------KMKFLP 216 (481)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTC----------EEEEEC
T ss_pred ceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCC----------ceEEEE
Confidence 56899999999999999997541 1 233444455555554444333221 233333
Q ss_pred CCCCcCCCCCCChHHHHHHHHHHHHccC--CCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCcc
Q 013235 224 NPDPYRGVFGADGEMYAKDVQDLIDFGT--SGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA 301 (447)
Q Consensus 224 ~p~~~~~~~~~d~~~~~~~le~~i~~~~--~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfg 301 (447)
... .+..| .++|++.|+... ...+.+|++.-...+.|.+.+ +++|.++|++||+++++|+++.++.
T Consensus 217 ~~~----~~~~d----~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~----l~~I~~la~~~~~~lhvDaA~g~~~ 284 (481)
T 4e1o_A 217 VDD----NFSLR----GEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC----LSELGPICAREGLWLHIDAAYAGTA 284 (481)
T ss_dssp CCT----TSCCC----HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGG
T ss_pred cCC----CCcCC----HHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC----HHHHHHHHHHcCCeEEeehhhHHHH
Confidence 211 12235 566777765321 112555666655666787766 9999999999999999999997653
Q ss_pred ccCCCcccccccCC-CCCEEEe--eccccCCccccccccCHH-HH-HhhcCCc-ccc-------------cC-CCChHHH
Q 013235 302 RTGSHFWGFEAHGV-VPDIVTM--AKGIGNGIPLGAVVTTPE-IA-EVLTRRN-YFN-------------TF-GGNPVCT 361 (447)
Q Consensus 302 r~G~~~~~~~~~gv-~pDivt~--sK~lg~G~pigav~~~~~-i~-~~l~~~~-~~~-------------T~-~~np~a~ 361 (447)
..+. .+.....|+ ..|.+++ .|.++.-+..|+++.+++ .. +.+.... +.. +. .+.+...
T Consensus 285 ~~~~-~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~ 363 (481)
T 4e1o_A 285 FLCP-EFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRS 363 (481)
T ss_dssp GGSG-GGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTH
T ss_pred HhCh-hhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccH
Confidence 3331 111111243 4588876 488876555666666543 32 2221110 100 01 1111122
Q ss_pred HHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHh
Q 013235 362 AAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKG 438 (447)
Q Consensus 362 aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~ 438 (447)
....++|+.+.. +++.++..++.+++.+.|+++. .+.++. .....++.+.+.. ......++.+.|.+
T Consensus 364 l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~-g~~~~~--~~~~~~v~f~~~~-------~~~~~~~l~~~L~~ 433 (481)
T 4e1o_A 364 VKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDP-SFEIPA--KRHLGLVVFRLKG-------PNSLTENVLKEIAK 433 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TEECCS--CCCSSEEEEEESS-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC-CeEEec--CCceeEEEEEeCC-------chHHHHHHHHHHHh
Confidence 223334444333 3455667777788877776541 222221 1223445555521 22345678899999
Q ss_pred CCcee
Q 013235 439 ICALF 443 (447)
Q Consensus 439 ~Gvlv 443 (447)
+|+++
T Consensus 434 ~g~~~ 438 (481)
T 4e1o_A 434 AGRLF 438 (481)
T ss_dssp HCSSB
T ss_pred CCeEE
Confidence 88543
No 225
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.30 E-value=2.5e-10 Score=117.79 Aligned_cols=265 Identities=9% Similarity=-0.029 Sum_probs=143.0
Q ss_pred HHHHHHHHhCCCCC---------ceEEEcCCHHHHHHHHHHHHHhhc-------C---------CCeEEEEcCCcccCch
Q 013235 145 DFAEALASKMPGNL---------KVVFFTNSGTEANELAIMMARLYT-------G---------CNDIISLRNAYHGNAA 199 (447)
Q Consensus 145 elae~L~~~~~~~~---------~~v~~~~sGseA~e~Aik~ar~~t-------~---------~~~ii~~~~~yHG~~~ 199 (447)
++.+.+++.++.+. ...+|++|||+||..|+..+|... + .+.+|+.....|-...
T Consensus 117 ~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~ 196 (475)
T 3k40_A 117 VMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVE 196 (475)
T ss_dssp HHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHH
T ss_pred HHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHH
Confidence 34455666664432 257899999999999999997542 1 1234444555554444
Q ss_pred hhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC--CCCeEEEEEccccCCCceeeCCCChH
Q 013235 200 GTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT--SGHVAGFLSESIQGVGGIIELAPGYL 277 (447)
Q Consensus 200 ~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~--~~~~aavi~Epi~~~gG~~~~~~~~l 277 (447)
.+....+. .+..++. ... + .| .++|++.|.... ...+.+|++.-..++.|.+.+ +
T Consensus 197 ~~~~~~g~----------~~~~v~~--d~~--~-~d----~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~----l 253 (475)
T 3k40_A 197 RAGLLGGV----------KLRSVQS--ENH--R-MR----GAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY----L 253 (475)
T ss_dssp HHHHHHTC----------EEEEECC--BTT--B-CC----HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----H
T ss_pred HHHHHcCC----------ceEEEEC--CCC--C-cC----HHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC----H
Confidence 44333221 1233332 111 2 34 567777775421 112455555545556777766 9
Q ss_pred HHHHHHHHHhCCEEEEeccccCccccCCCcccccccCC-CCCEEEee--ccccCCccccccccCHH-H-HHhhcCC-ccc
Q 013235 278 PAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTMA--KGIGNGIPLGAVVTTPE-I-AEVLTRR-NYF 351 (447)
Q Consensus 278 ~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv-~pDivt~s--K~lg~G~pigav~~~~~-i-~~~l~~~-~~~ 351 (447)
++|.++|++||+++++|++|.+....+. .+.....++ ..|.++++ |.+++.+..|+++.+++ . .+.+... .+.
T Consensus 254 ~~I~~la~~~~~~lhvD~A~~~~~~~~~-~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl 332 (475)
T 3k40_A 254 DECGPVGNKHNLWIHVDAAYAGSAFICP-EYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYL 332 (475)
T ss_dssp HHHHHHHHHTTCEEEEECTTGGGGGGSG-GGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC-----------
T ss_pred HHHHHHHHHhCCeEEEeHHhHHHHHhCH-hhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCcccc
Confidence 9999999999999999999976422221 111111233 45888764 88876556677666543 2 1222110 000
Q ss_pred -------------ccC-CCChHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEE
Q 013235 352 -------------NTF-GGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414 (447)
Q Consensus 352 -------------~T~-~~np~a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~gie 414 (447)
.+. .+-+.......++|+.+.. +++.++..++.+++.++|+++ ..+.++.. ....++.+.
T Consensus 333 ~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-~g~~l~~~--~~~~iv~f~ 409 (475)
T 3k40_A 333 KHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVAD-SRFELAAE--INMGLVCFR 409 (475)
T ss_dssp ----------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTEEESSC--CBTTEEEEE
T ss_pred CCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEecC--CceEEEEEE
Confidence 011 1212223333444554433 345667777888888888765 12222221 223445555
Q ss_pred EeeCCCCCCCCHHHHHHHHHHHHhCCcee
Q 013235 415 FVTDRQLKTPAKAETLYIMDKMKGICALF 443 (447)
Q Consensus 415 l~~~~~~~~p~~~~~~~~~~~l~~~Gvlv 443 (447)
+.. ......++.+.|.++|.++
T Consensus 410 ~~~-------~~~~~~~l~~~L~~~g~~~ 431 (475)
T 3k40_A 410 LKG-------SNERNEALLKRINGRGHIH 431 (475)
T ss_dssp ESS-------CHHHHHHHHHHHHHHTSCB
T ss_pred eCC-------chHHHHHHHHHHHhCCcEE
Confidence 521 2234578889999988754
No 226
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.29 E-value=9.4e-10 Score=113.60 Aligned_cols=262 Identities=10% Similarity=0.007 Sum_probs=141.5
Q ss_pred HHHHHHHHhCCCCC---------ceEEEcCCHHHHHHHHHHHHHhh--c------CC-------Ce--EEEEcCCcccCc
Q 013235 145 DFAEALASKMPGNL---------KVVFFTNSGTEANELAIMMARLY--T------GC-------ND--IISLRNAYHGNA 198 (447)
Q Consensus 145 elae~L~~~~~~~~---------~~v~~~~sGseA~e~Aik~ar~~--t------~~-------~~--ii~~~~~yHG~~ 198 (447)
++++.++++++.+. ..++|++||||||..|+..+|.. . |. .+ |++.+.+|+. .
T Consensus 117 ~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s-~ 195 (486)
T 1js3_A 117 VMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSS-V 195 (486)
T ss_dssp HHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHH-H
T ss_pred HHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHH-H
Confidence 45556677765432 35789999999999999888642 1 21 24 4555555543 2
Q ss_pred hhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccC-CC-CeEEEEEccccCCCceeeCCCCh
Q 013235 199 AGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGT-SG-HVAGFLSESIQGVGGIIELAPGY 276 (447)
Q Consensus 199 ~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~-~~-~~aavi~Epi~~~gG~~~~~~~~ 276 (447)
..+....+. .+..++.. ..+..| .++|++.|.... .+ .+.+|++.-..++.|.+.+
T Consensus 196 ~~~~~~~G~----------~v~~v~~d----~~~~~d----~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~---- 253 (486)
T 1js3_A 196 ERAGLIGGV----------KLKAIPSD----GKFAMR----ASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN---- 253 (486)
T ss_dssp HHHHHHHTC----------EEEEECCC----TTSCCC----HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----
T ss_pred HHHHHhCCC----------ceEEeecC----CCCCCC----HHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCC----
Confidence 222222211 23334321 122245 567777775321 11 2335555444456677765
Q ss_pred HHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCC-CCCEEEe--eccccCCccccccccCHH-H-HHhhcCCc-c
Q 013235 277 LPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV-VPDIVTM--AKGIGNGIPLGAVVTTPE-I-AEVLTRRN-Y 350 (447)
Q Consensus 277 l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv-~pDivt~--sK~lg~G~pigav~~~~~-i-~~~l~~~~-~ 350 (447)
+++|.++|++||+++++|++|.++......+- ....++ ..|.+++ .|.++..+.+|+++.+++ . .+.+.... +
T Consensus 254 l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~-~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~y 332 (486)
T 1js3_A 254 LLEVGPICHEEDIWLHVDAAYAGSAFICPEFR-HLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVY 332 (486)
T ss_dssp HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTG-GGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC-----
T ss_pred HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHH-HHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchh
Confidence 99999999999999999999976533221110 001122 3588875 498876678898888644 2 34432100 0
Q ss_pred c-c----------------cC--CCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecc
Q 013235 351 F-N----------------TF--GGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRG 408 (447)
Q Consensus 351 ~-~----------------T~--~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G 408 (447)
. . .. ....+++.++ |+.+..+ ++.++..++.+++.+.|+++ ..+.++. ...+
T Consensus 333 l~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~a---l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-~~~~~~~--~~~~ 406 (486)
T 1js3_A 333 LKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFV---FRMYGVKGLQAYIRKHVQLSHEFEAFVLQD-PRFEVCA--EVTL 406 (486)
T ss_dssp -------CCSCCCGGGSSSCSCCCCTHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTEEECS--CCCS
T ss_pred hCCCcccccCCCCccccCCCCCCchhHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEeC--CCce
Confidence 0 0 00 1123344444 4433333 34566666777777777663 1121111 1234
Q ss_pred eeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCcee
Q 013235 409 FLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALF 443 (447)
Q Consensus 409 l~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv 443 (447)
.++.+.+.. ......++.+.|.++|+++
T Consensus 407 ~~v~f~~~~-------~~~~~~~l~~~L~~~g~~~ 434 (486)
T 1js3_A 407 GLVCFRLKG-------SDGLNEALLERINSARKIH 434 (486)
T ss_dssp SEEEEEESS-------CHHHHHHHHHHHHHHTSCB
T ss_pred eEEEEEecC-------hHHHHHHHHHHHHhcCCEE
Confidence 455555421 1223467888898888653
No 227
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.23 E-value=3.4e-10 Score=115.33 Aligned_cols=279 Identities=13% Similarity=0.061 Sum_probs=148.0
Q ss_pred CCCCHHHHHHHHHHHHhcccccc------cccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeE
Q 013235 114 GHCHPYVVDSIVNQIKRIQHSTV------LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDI 187 (447)
Q Consensus 114 Gh~~p~v~~A~~~~l~~~~~~~~------~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~i 187 (447)
+|..|++++++.++.+.+.+.+. ....+...++.++++++++.+.+++.++++++.++++++..++ ..++++|
T Consensus 75 ~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~-~~~gd~V 153 (438)
T 1wyu_A 75 SHHVPPVVQALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR-ETGRMGV 153 (438)
T ss_dssp CCCCCHHHHHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH-HHTCCEE
T ss_pred CCcCcHHHHHHHhcchhhhcCCCCcchhhhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHh-cCCCCEE
Confidence 45567766666422222211111 1123456789999999886554556789999955555544333 3467888
Q ss_pred EEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCC
Q 013235 188 ISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVG 267 (447)
Q Consensus 188 i~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~g 267 (447)
|+.+.+|+........... ..|+..+..|.. .+..|.+ + +. + ++++|++... +.+
T Consensus 154 iv~~~~h~s~~~~~~~~a~---------~~G~~v~~v~~~---~~~~d~~-------~-i~---~-~t~~v~i~~p-n~t 208 (438)
T 1wyu_A 154 LVSQGVHPEYRAVLRAYLE---------AVGAKLLTLPLE---GGRTPLP-------E-VG---E-EVGAVVVQNP-NFL 208 (438)
T ss_dssp EEETTSCHHHHHHHHHHHH---------HTTCEEEEECCB---TTBCCCC-------C-CC---T-TEEEEEEESS-CTT
T ss_pred EEcCccCHhHHHHHHHHHH---------HCCCEEEEEcCc---CCccCHH-------H-hC---C-CeEEEEEECC-CCC
Confidence 8887776543322111000 012222222210 1112211 1 21 2 5667666654 778
Q ss_pred ceeeCCCChHHHHHHHHHHhCCEEEEe--ccccCccccCCCcccccccCCCCCEEEee-cccc-----CCccccccccCH
Q 013235 268 GIIELAPGYLPAVYKSIKKAGGLCIAD--EVQAGFARTGSHFWGFEAHGVVPDIVTMA-KGIG-----NGIPLGAVVTTP 339 (447)
Q Consensus 268 G~~~~~~~~l~~l~~l~~~~g~llI~D--Ev~tGfgr~G~~~~~~~~~gv~pDivt~s-K~lg-----~G~pigav~~~~ 339 (447)
|.+.+ +++|.++|+++|+++|+| +.. +|... . ...+ .+|+++++ |.++ +|..+|++++++
T Consensus 209 G~~~~----l~~i~~la~~~g~~vivd~d~~a--~g~~~-~---~~~~--g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~ 276 (438)
T 1wyu_A 209 GALED----LGPFAEAAHGAGALFVAVADPLS--LGVLK-P---PGAY--GADIAVGDGQSLGLPMGFGGPHFGFLATKK 276 (438)
T ss_dssp SBCCC----HHHHHHHHHHTTCEEEEECCTTG--GGTBC-C---HHHH--TCSEEEEECTTTTCCCGGGCSCCEEEEECG
T ss_pred eEEec----HHHHHHHHHHcCCEEEEEechhh--ccCcC-C---CccC--CCCEEEECCcccCCCccCCCCCeeEEEEcH
Confidence 88775 999999999999999955 332 32211 0 1122 36999874 7543 345789999999
Q ss_pred HHHHhhcCCcc--------------------------cccCCC---ChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHH
Q 013235 340 EIAEVLTRRNY--------------------------FNTFGG---NPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYL 387 (447)
Q Consensus 340 ~i~~~l~~~~~--------------------------~~T~~~---np~a~aaala~L~~i~~~---~l~~~~~~~g~~l 387 (447)
++++.+....+ ..|++- +.++..++...|+.+.++ ++.++.+++.+++
T Consensus 277 ~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l 356 (438)
T 1wyu_A 277 AFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKL 356 (438)
T ss_dssp GGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 88776532210 122222 223222222235544433 3455566666677
Q ss_pred HHHHHHHHHhcCCeeeEeec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCcee
Q 013235 388 KERLTALKDKYGIIGDVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALF 443 (447)
Q Consensus 388 ~~~L~~l~~~~~~i~~vrg~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv 443 (447)
.++|+++ +.+ .+.+. ..+..+.+..+. ...++.+.|.++||.+
T Consensus 357 ~~~L~~~----~g~-~~~~~~~~~~~~~~~~~~--------~~~~~~~~L~~~gi~v 400 (438)
T 1wyu_A 357 HALLLEV----PGV-RPFTPKPFFNEFALALPK--------DPEAVRRALAERGFHG 400 (438)
T ss_dssp HHHHTTS----TTC-EECSCSSBCSEEEEECSS--------CHHHHHHHHHHTTCCC
T ss_pred HHHHhcC----CCe-EECCCCCeEEEEEEeCCC--------CHHHHHHHHHHCCcee
Confidence 6666553 111 22222 233323332110 1467889999999998
No 228
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.12 E-value=1.9e-09 Score=117.21 Aligned_cols=228 Identities=12% Similarity=0.082 Sum_probs=132.7
Q ss_pred hHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeE
Q 013235 141 HAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVH 220 (447)
Q Consensus 141 ~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~ 220 (447)
....++.+.+++.++.+ +.++++|++++||.+++.... .+++.|++.+++|+..... +..++ ..
T Consensus 205 g~v~~~ee~la~l~G~d-~~i~~~~Gtt~a~~~~i~al~--~~GD~Vlv~~~~h~s~~~~-~~~~G------------~~ 268 (755)
T 2vyc_A 205 GAFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACM--TDNDVVVVDRNCHKSIEQG-LMLTG------------AK 268 (755)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHHC--CTTCEEEEESSCCHHHHHH-HHHHC------------CE
T ss_pred cHHHHHHHHHHHHhCCC-ceEEECCcHHHHHHHHHHHhc--CCCCEEEECCCchHHHHHH-HHHcC------------CE
Confidence 45567777788777543 456667777799999998653 2567888888887654433 22222 11
Q ss_pred eecCCCCcCCCCC----C-----ChHHHHHHHHHHHHccCC------CC-eEEEEEccccCCCceeeCCCChHHHHHHHH
Q 013235 221 HALNPDPYRGVFG----A-----DGEMYAKDVQDLIDFGTS------GH-VAGFLSESIQGVGGIIELAPGYLPAVYKSI 284 (447)
Q Consensus 221 ~~~~p~~~~~~~~----~-----d~~~~~~~le~~i~~~~~------~~-~aavi~Epi~~~gG~~~~~~~~l~~l~~l~ 284 (447)
.+..+... ..|+ . | .++|++.+..... .+ .+.++++|. ..|.+.+ +++|.++|
T Consensus 269 ~v~v~~~~-~~~g~~g~i~~~~~d----~e~le~~i~~~~~~k~~~~~~~klvil~~pn--~~G~v~d----l~~I~~ia 337 (755)
T 2vyc_A 269 PVYMVPSR-NRYGIIGPIYPQEMQ----PETLQKKISESPLTKDKAGQKPSYCVVTNCT--YDGVCYN----AKEAQDLL 337 (755)
T ss_dssp EEEECCCB-CTTSCBCCCCGGGGS----HHHHHHHHHHCTTTGGGTTCCCSCEEEESSC--TTSEEEC----HHHHHHHH
T ss_pred EEEEeCCC-CccccccccCcCCCC----HHHHHHHHHhCccccccccCCCeEEEEECCC--CCceecC----HHHHHHHH
Confidence 11111111 0111 1 3 5677777754211 01 256667763 4688876 99999999
Q ss_pred HHhCCEEEEeccccCccccCCCcccccc-cCCCCCE------E--EeeccccCCcc-ccccccCHH---H-HHhhcCC-c
Q 013235 285 KKAGGLCIADEVQAGFARTGSHFWGFEA-HGVVPDI------V--TMAKGIGNGIP-LGAVVTTPE---I-AEVLTRR-N 349 (447)
Q Consensus 285 ~~~g~llI~DEv~tGfgr~G~~~~~~~~-~gv~pDi------v--t~sK~lg~G~p-igav~~~~~---i-~~~l~~~-~ 349 (447)
++||++||+||+|.+.-..+..+..... .+...|+ + +++|.++ |++ .|++..+++ + ...+... .
T Consensus 338 ~~~~~~livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~-g~~~g~~i~~~~~~~~i~~~~~~~~~~ 416 (755)
T 2vyc_A 338 EKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLN-ALSQASYIHVREGRGAINFSRFNQAYM 416 (755)
T ss_dssp TTTCSEEEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSS-CCTTCEEEEEECCBTCCCHHHHHHHHH
T ss_pred HHcCCEEEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECcccccc-CcCCeeeeeecCcccccCHHHHHHHHH
Confidence 9999999999999743112211100111 2200132 3 4679876 343 344544333 1 1112111 1
Q ss_pred ccccCCCChHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHH
Q 013235 350 YFNTFGGNPVCTAAGHAVLKVIQKD---KLQNNAHVVGSYLKERLTALKD 396 (447)
Q Consensus 350 ~~~T~~~np~a~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~ 396 (447)
...+.+.|...+++..++++.++.+ ++.++..++.++++++|+++..
T Consensus 417 ~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~ 466 (755)
T 2vyc_A 417 MHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYK 466 (755)
T ss_dssp HTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2233445667777777788877653 5788899999999999998754
No 229
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.09 E-value=1.1e-09 Score=117.51 Aligned_cols=230 Identities=11% Similarity=0.130 Sum_probs=138.2
Q ss_pred cchHHHHHHHHHHHhCCCCCceEEEcCCH-HHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCC
Q 013235 139 LNHAIADFAEALASKMPGNLKVVFFTNSG-TEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT 217 (447)
Q Consensus 139 ~~~~~~elae~L~~~~~~~~~~v~~~~sG-seA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~ 217 (447)
+...+.++.+++++.++. +..+|+.+| +.||.+++.... ..++.|++.+++|.. ...++.+++..
T Consensus 193 ~~g~i~eaE~~lA~~fGa--~~a~~v~nGts~An~~ai~al~--~pGD~VLv~r~~H~S-~~~~l~lsGa~--------- 258 (715)
T 3n75_A 193 HSGPHKEAEQYIARVFNA--DRSYMVTNGTSTANKIVGMYSA--PAGSTILIDRNCHKS-LTHLMMMSDVT--------- 258 (715)
T ss_dssp TBTHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHHC--CTTCEEEEESSCCHH-HHHHHHHSCCE---------
T ss_pred CcHHHHHHHHHHHHHhCC--CCceEECcHHHHHHHHHHHHhC--CCCCEEEECCCccHH-HHHHHHHcCCE---------
Confidence 455678899999999854 555666666 699988887542 356677777666543 33344444321
Q ss_pred CeEeecCCCCcCCCCC----CChHH-HHHHHHHHHHccCCCC--eEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCE
Q 013235 218 GVHHALNPDPYRGVFG----ADGEM-YAKDVQDLIDFGTSGH--VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGL 290 (447)
Q Consensus 218 g~~~~~~p~~~~~~~~----~d~~~-~~~~le~~i~~~~~~~--~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~l 290 (447)
.+..+... ..|+ .+... -.++|++.+......+ .+.++++| +..|.+.+ +++|.++|++++
T Consensus 259 ---pv~v~~~~-~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p--n~~G~v~d----l~~I~ela~~~~-- 326 (715)
T 3n75_A 259 ---PIYFRPTR-NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS--TYDGLLYN----TDFIKKTLDVKS-- 326 (715)
T ss_dssp ---EEEECCCB-CTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS--CTTSEEEC----HHHHHHHCCCSE--
T ss_pred ---EEEEeccc-cccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC--CCCCccCC----HHHHHHHhCcCc--
Confidence 11111000 1121 10000 0677888887532111 15777788 67888887 999999998774
Q ss_pred EEEeccccCccccCCCc---ccccccCCCCCEE-----EeeccccCCcc-ccccccCHHHH-HhhcC-CcccccCCCChH
Q 013235 291 CIADEVQAGFARTGSHF---WGFEAHGVVPDIV-----TMAKGIGNGIP-LGAVVTTPEIA-EVLTR-RNYFNTFGGNPV 359 (447)
Q Consensus 291 lI~DEv~tGfgr~G~~~---~~~~~~gv~pDiv-----t~sK~lg~G~p-igav~~~~~i~-~~l~~-~~~~~T~~~np~ 359 (447)
+|+||+|.+.-..+..+ .+.+ .+..+|++ +++|.+++ +. -|++.++.++. +.+.. .....|.+-|+.
T Consensus 327 livDEAH~~~~~f~~~~~~~~al~-~g~~aD~vii~~~S~hKtL~g-ltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~ 404 (715)
T 3n75_A 327 IHFDSAWVPYTNFSPIYEGKCGMS-GGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNEAYMMHTTTSPHYG 404 (715)
T ss_dssp EEEECTTCTTGGGSGGGTTSSTTS-SSCCTTCEEEEEECHHHHSSC-CTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHH
T ss_pred EEEccccccccccCCccccccccc-cCcCCCEEEEEEecccccccC-CCCeeEEEeCchhhHHHHHHHHHhhcCCCchHH
Confidence 79999997431112111 1111 12236754 46799864 22 24444544321 12221 123356667888
Q ss_pred HHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHH
Q 013235 360 CTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTALKD 396 (447)
Q Consensus 360 a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~ 396 (447)
.+|+..++++.+++ +++.+++.++.++++++|+++..
T Consensus 405 ~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~ 444 (715)
T 3n75_A 405 IVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRT 444 (715)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 88888889988863 46889999999999999999864
No 230
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.07 E-value=2.8e-09 Score=115.11 Aligned_cols=231 Identities=13% Similarity=0.072 Sum_probs=129.2
Q ss_pred cchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCC
Q 013235 139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG 218 (447)
Q Consensus 139 ~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g 218 (447)
+.....++.+++++.++.+ ..++++|++++||.+++.... ..++.|++.+++|+....+.+..++
T Consensus 171 ~~~~i~e~e~~lA~~~gae-~~i~v~nGtt~an~~ai~al~--~pGD~VLv~~~~H~S~~~~~~~l~G------------ 235 (730)
T 1c4k_A 171 HEGPAVAAEKHAARVYNAD-KTYFVLGGSSNANNTVTSALV--SNGDLVLFDRNNHKSVYNSALAMAG------------ 235 (730)
T ss_dssp TBTHHHHHHHHHHHHTTCS-EEEEESSHHHHHHHHHHHHHC--CTTCEEEEETTCCHHHHHHHTTTTC------------
T ss_pred ChHHHHHHHHHHHHHHCCC-cEEEECCHHHHHHHHHHHHhc--CCCCEEEEcCCchHHHHHHHHHHCC------------
Confidence 4567789999999999653 345566666699999998643 2567888888876554433132222
Q ss_pred eEeecCCCCcCCCCC----CChHHH-HHHHHHHHHcc------CCCC-eEEEEEccccCCCceeeCCCChHHHHHHHHHH
Q 013235 219 VHHALNPDPYRGVFG----ADGEMY-AKDVQDLIDFG------TSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKK 286 (447)
Q Consensus 219 ~~~~~~p~~~~~~~~----~d~~~~-~~~le~~i~~~------~~~~-~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~ 286 (447)
...+..+... ..|+ .|.+.+ .+.|++.+... .+.. .+.++.+|. ..|.+.+ +++|.++|++
T Consensus 236 a~~v~v~~~~-~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn--~~G~v~d----l~~I~~la~~ 308 (730)
T 1c4k_A 236 GRPVYLQTNR-NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT--YDGTIYN----AHEVVKRIGH 308 (730)
T ss_dssp CEEEEECEEE-CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBC--TTSEEEC----HHHHHHHHGG
T ss_pred CEEEEEeCCc-cccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCC--CCCeecC----HHHHHHHHHH
Confidence 1111111100 0111 132222 23347666532 1111 345666674 4788876 9999999999
Q ss_pred hCCEEEEeccccCc-cccCCCc---ccc--cccCCC-CC-EEE--eeccccCCccccccc-cCHHH-------H--Hhhc
Q 013235 287 AGGLCIADEVQAGF-ARTGSHF---WGF--EAHGVV-PD-IVT--MAKGIGNGIPLGAVV-TTPEI-------A--EVLT 346 (447)
Q Consensus 287 ~g~llI~DEv~tGf-gr~G~~~---~~~--~~~gv~-pD-ivt--~sK~lg~G~pigav~-~~~~i-------~--~~l~ 346 (447)
||++||+||+|.+. +..+ .. ... +.++.. |+ +++ ++|.++ |++.|+++ .+++. + ..+.
T Consensus 309 ~g~~livDeAh~~~~~f~~-~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~-g~~~gg~I~v~~~~l~g~~~~i~~~~~~ 386 (730)
T 1c4k_A 309 LCDYIEFDSAWVGYEQFIP-MMRNSSPLLIDDLGPEDPGIIVVQSVHKQQA-GFSQTSQIHKKDSHIKGQLRYCDHKHFN 386 (730)
T ss_dssp GBSEEEEECTTCCGGGSSG-GGGGGCTTSCCCCCTTSCEEEEEECHHHHSS-CCTTCEEEEEECGGGTTSTTCCCHHHHH
T ss_pred cCCeEEEEcccccccccCc-ccCCcCcccccccCCCCCCEEEEECCCCCCC-CCCCEEEEEecchhhcCcccccCHHHHH
Confidence 99999999999632 2111 11 111 122431 22 554 679875 34333333 22211 1 1111
Q ss_pred CC-cccccCCCChHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHH
Q 013235 347 RR-NYFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGSYLKERLTA 393 (447)
Q Consensus 347 ~~-~~~~T~~~np~a~aaala~L~~i~~---~~l~~~~~~~g~~l~~~L~~ 393 (447)
.. ....+.+.++..+++..++++.++. +++.+++.++.++++++|++
T Consensus 387 ~~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~ 437 (730)
T 1c4k_A 387 NSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIK 437 (730)
T ss_dssp HHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 10 1122334566666666667777654 45678888888889888877
No 231
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=98.94 E-value=2.1e-08 Score=100.16 Aligned_cols=288 Identities=11% Similarity=0.055 Sum_probs=155.6
Q ss_pred CCCCCHHHHHHHHHHHHhccc-cc------cc--ccchHHHHHHHHHHHhCCCCC-ceEEE-cCCHHHHHHHHHHHHHhh
Q 013235 113 CGHCHPYVVDSIVNQIKRIQH-ST------VL--YLNHAIADFAEALASKMPGNL-KVVFF-TNSGTEANELAIMMARLY 181 (447)
Q Consensus 113 lGh~~p~v~~A~~~~l~~~~~-~~------~~--~~~~~~~elae~L~~~~~~~~-~~v~~-~~sGseA~e~Aik~ar~~ 181 (447)
-+--+|+|.+|+.+.+..... .. .+ -....+.+.+++|++++..+. ++|+| +.|||++++++++-....
T Consensus 21 ~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~ 100 (377)
T 3e77_A 21 QSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGL 100 (377)
T ss_dssp SCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGG
T ss_pred cCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCC
Confidence 344689999999987754311 00 01 113456778888888886543 45777 589999999999854332
Q ss_pred cCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEc
Q 013235 182 TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSE 261 (447)
Q Consensus 182 t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~E 261 (447)
..++++++...+.++... ...+ ...|+.....|.... ++.+. ++++..+ .+ ++..|.+-
T Consensus 101 ~~Gd~v~~~~~g~~~~~~-~~~a----------~~~G~~~~~~~~~~~--~~~~~----~~~~~~i---~~-~t~lV~~~ 159 (377)
T 3e77_A 101 KAGRCADYVVTGAWSAKA-AEEA----------KKFGTINIVHPKLGS--YTKIP----DPSTWNL---NP-DASYVYYC 159 (377)
T ss_dssp STTCEEEECCCSHHHHHH-HHHH----------TTTSEEEECSCCCSS--SCSCC----CGGGCCC---CT-TCSCEEEE
T ss_pred CCCCeEEEEECCHHHHHH-HHHH----------HHhCCceEEeccCCC--cCCCC----ChHHhcc---CC-CccEEEEe
Confidence 224677776666665321 1111 112333222222111 11121 1222212 12 44455554
Q ss_pred cccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCH
Q 013235 262 SIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTP 339 (447)
Q Consensus 262 pi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~ 339 (447)
-+....|.+.| + +|+++|+++++|-+|+ +|. ...-++.++ ++++| |.+| .--+|+++.++
T Consensus 160 h~et~tG~~~p----i-----i~~~~~~~~~vD~~q~-~g~---~~id~~~~~----~~~~s~~K~~g-p~G~g~l~~~~ 221 (377)
T 3e77_A 160 ANETVHGVEFD----F-----IPDVKGAVLVCDMSSN-FLS---KPVDVSKFG----VIFAGAQKNVG-SAGVTVVIVRD 221 (377)
T ss_dssp SEETTTTEECS----S-----CCCCTTCCEEEECTTT-TTS---SCCCGGGCS----EEEEEGGGTTS-CTTCEEEEEET
T ss_pred CccCchheEch----h-----hhccCCCEEEEEcccc-cCC---CCCchhhcC----EEEEecccccC-CCccEEEEEcH
Confidence 45555688876 2 4788999999999997 432 222334444 45555 9884 22357777777
Q ss_pred HHHHhhcCC-----------cccccCCCChHH-HHHHHHHHHHHhhh-h---HHHHHHHHHHHHHHHHHHHHHhcCCe-e
Q 013235 340 EIAEVLTRR-----------NYFNTFGGNPVC-TAAGHAVLKVIQKD-K---LQNNAHVVGSYLKERLTALKDKYGII-G 402 (447)
Q Consensus 340 ~i~~~l~~~-----------~~~~T~~~np~a-~aaala~L~~i~~~-~---l~~~~~~~g~~l~~~L~~l~~~~~~i-~ 402 (447)
++.+.+.+. ....+++..++. ..+..++|++++++ + ..++.+++.++|+++|+++. ++. .
T Consensus 222 ~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~---g~~~~ 298 (377)
T 3e77_A 222 DLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQ---GFYVC 298 (377)
T ss_dssp TSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTST---TSEEC
T ss_pred HHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC---Cceec
Confidence 664332210 012344444444 44455789988765 2 45566667777777766541 111 1
Q ss_pred --eEeec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235 403 --DVRGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ 446 (447)
Q Consensus 403 --~vrg~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~ 446 (447)
+-..+ +..+.+.+..- .|+......+.+.+.++||.+.++
T Consensus 299 ~~~~~~rs~~ivsf~~~~~----~~~~~~~~~~l~~l~~~Gi~~~~g 341 (377)
T 3e77_A 299 PVEPQNRSKMNIPFRIGNA----KGDDALEKRFLDKALELNMLSLKG 341 (377)
T ss_dssp CSCGGGBCSSEEEEEESST----TCCHHHHHHHHHHHHHTTEESCBC
T ss_pred CCCHHHcCCcEEEEEcCCC----CCchhHHHHHHHHHHHCCcEEeCC
Confidence 10112 33466666321 122222246778888999998654
No 232
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=98.83 E-value=9.1e-08 Score=96.46 Aligned_cols=252 Identities=13% Similarity=0.070 Sum_probs=148.1
Q ss_pred ceEEEcCCHHHHHHHHHHHHHhh--cCCCeEEEEcCCcccCchhhhhccCCCC-ccccccCCCeEeecCCCCcCCCCCCC
Q 013235 159 KVVFFTNSGTEANELAIMMARLY--TGCNDIISLRNAYHGNAAGTMGATAQSN-WKFNVVQTGVHHALNPDPYRGVFGAD 235 (447)
Q Consensus 159 ~~v~~~~sGseA~e~Aik~ar~~--t~~~~ii~~~~~yHG~~~~~~~~t~~~~-~~~~~~~~g~~~~~~p~~~~~~~~~d 235 (447)
...|++|++|-++.+++..+... .+.++||+ .-.-|=+...++.+.+... |-.+. ..++ .++.|
T Consensus 135 ~~~flVnGsTgg~lamilaa~r~~rpg~d~VIv-pRn~HKSv~kAliL~Gl~Pv~V~p~--------~d~~----~~~id 201 (501)
T 3hl2_A 135 ANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIW-PRIDQKSCFKSMITAGFEPVVIENV--------LEGD----ELRTD 201 (501)
T ss_dssp CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEE-ECCCCHHHHHHHHHTTCEEEEECEE--------EETT----EEEEC
T ss_pred CcEEEECcHHHHHHHHHHHHcCcccCCCCEEEE-ecchHHHHHHHHHHcCCeEEEEeee--------eccc----ccCCC
Confidence 35778888887777766655332 13467776 4555766667766655321 11110 0011 12234
Q ss_pred hHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCc--cccccc
Q 013235 236 GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHF--WGFEAH 313 (447)
Q Consensus 236 ~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~--~~~~~~ 313 (447)
.+++++.|++.+++.+++|+..|-...++...+ +++|.++|++||+++++||+|-+.-....++ .+++ +
T Consensus 202 ----~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~-~ 272 (501)
T 3hl2_A 202 ----LKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGAR-V 272 (501)
T ss_dssp ----HHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHH-H
T ss_pred ----HHHHHHHHHhcCCCcEEEEEecCCCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHh-c
Confidence 678888888765568888888764433333344 9999999999999999999985432111000 0111 2
Q ss_pred CCCCCEEEee--ccccCCccccc-cc-c-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhh---hhHHHHHHHHHH
Q 013235 314 GVVPDIVTMA--KGIGNGIPLGA-VV-T-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQK---DKLQNNAHVVGS 385 (447)
Q Consensus 314 gv~pDivt~s--K~lg~G~piga-v~-~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~---~~l~~~~~~~g~ 385 (447)
| ..|+++.| |-+ =.|+|. ++ . ++++++.+.. .+..|-++.|.. ....+|..+-. .+++++..++.+
T Consensus 273 G-rAD~vVqS~HK~l--lvpIGG~ii~~~d~e~l~~~~~-~yPGr~S~Spsl--dl~~tLL~lGr~Gy~~ll~e~~ela~ 346 (501)
T 3hl2_A 273 G-RIDAFVQSLDKNF--MVPVGGAIIAGFNDSFIQEISK-MYPGRASASPSL--DVLITLLSLGSNGYKKLLKERKEMFS 346 (501)
T ss_dssp S-CCCEEEEEHHHHH--CCCSSCEEEEESCHHHHHHHHH-TSCSCBCSHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcEEEecccccc--eeecCceEEEeCCHHHHHHHHH-hCCCCCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 47999988 433 235544 33 2 5667665532 233444454543 23334443333 356788888999
Q ss_pred HHHHHHHHHHHhcC-CeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCc
Q 013235 386 YLKERLTALKDKYG-IIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICA 441 (447)
Q Consensus 386 ~l~~~L~~l~~~~~-~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gv 441 (447)
+|+++|+++...++ .+.+.+..-.-+++.+..... +.......+-..|+.|+|
T Consensus 347 ~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~---~~~~~~t~~gs~Lf~r~v 400 (501)
T 3hl2_A 347 YLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDE---HRDKAVTQLGSMLFTRQV 400 (501)
T ss_dssp HHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCT---TTSCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcChhhcCCCCCceeEEEecccccc---cccccHHHHHHHHHhcCC
Confidence 99999999998775 355666666666777643311 111124467777888776
No 233
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=98.79 E-value=9.3e-08 Score=97.00 Aligned_cols=217 Identities=12% Similarity=0.011 Sum_probs=123.7
Q ss_pred ceEEEcCCHH-HHHHHHHHHHHhhc-CCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCCh
Q 013235 159 KVVFFTNSGT-EANELAIMMARLYT-GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADG 236 (447)
Q Consensus 159 ~~v~~~~sGs-eA~e~Aik~ar~~t-~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~ 236 (447)
...+++|++| .++..++..+|... +.+.||+.+. -|-+...++.+.+... ..+. |.+.....+-|
T Consensus 117 ~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~-aHkSv~kAl~l~Gl~p----------~~v~-~~~~~~~~~id- 183 (450)
T 3bc8_A 117 ASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRI-DQKSCFKSMVTAGFEP----------VVIE-NVLEGDELRTD- 183 (450)
T ss_dssp CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECC-CCHHHHHHHHHTTCEE----------EEEC-CEEETTEEECC-
T ss_pred ceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECC-cHHHHHHHHHHcCCee----------EEEE-eeecCccCCcC-
Confidence 3458889887 66666777777632 2456666655 8888888877765321 1111 10000011234
Q ss_pred HHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCC-
Q 013235 237 EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGV- 315 (447)
Q Consensus 237 ~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv- 315 (447)
.+.|++.|++..++.+++|++.|-....|.+.+ +++|.++|++||+++++||+|-++-+...++. -+.+..
T Consensus 184 ---~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~-~~a~~~~ 255 (450)
T 3bc8_A 184 ---LKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSKCMHLI-QQGARVG 255 (450)
T ss_dssp ---HHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHH-HHHHHHS
T ss_pred ---HHHHHHHHHhcCCCCEEEEEEECCcCCCceecC----HHHHHHHHHHCCCeEEEECCCchhhhhhHhHH-HHHhccc
Confidence 678888887654457889999875554455555 99999999999999999999865322110110 011111
Q ss_pred CCCEEEee--ccccCCcccccccc-CHHHHHhhcCCcccccCCCChHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHH
Q 013235 316 VPDIVTMA--KGIGNGIPLGAVVT-TPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKDK---LQNNAHVVGSYLKE 389 (447)
Q Consensus 316 ~pDivt~s--K~lg~G~pigav~~-~~~i~~~l~~~~~~~T~~~np~a~aaala~L~~i~~~~---l~~~~~~~g~~l~~ 389 (447)
..|.+++| |-+..-+.-+.+.. +++..+.+.. .+..+-+.+|. .....+|..+-.+. +.++..++.+++++
T Consensus 256 ~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~-~~~g~~s~Sps--L~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~ 332 (450)
T 3bc8_A 256 RIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK-MYPGRASASPS--LDVLITLLSLGCSGYRKLLKERKEMFVYLST 332 (450)
T ss_dssp CCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHH-HSCSCBCSHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCccCCCchhccEEEEecCHHHHHHHHH-HhhcCCcccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999888 65543233344443 5555554432 11111223342 11122222222222 34444777899999
Q ss_pred HHHHHHHhcC
Q 013235 390 RLTALKDKYG 399 (447)
Q Consensus 390 ~L~~l~~~~~ 399 (447)
.|+++..+++
T Consensus 333 ~l~~~~~~~g 342 (450)
T 3bc8_A 333 QLKKLAEAHN 342 (450)
T ss_dssp HHHHHHHHTT
T ss_pred HHHhhHHhcC
Confidence 9999887765
No 234
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=98.69 E-value=5.7e-07 Score=89.21 Aligned_cols=279 Identities=10% Similarity=-0.013 Sum_probs=148.3
Q ss_pred CCHHHHHHHHHHHHhccc-cc------cc--ccchHHHHHHHHHHHhCCCC-CceEEE-cCCHHHHHHHHHHHHHhhcCC
Q 013235 116 CHPYVVDSIVNQIKRIQH-ST------VL--YLNHAIADFAEALASKMPGN-LKVVFF-TNSGTEANELAIMMARLYTGC 184 (447)
Q Consensus 116 ~~p~v~~A~~~~l~~~~~-~~------~~--~~~~~~~elae~L~~~~~~~-~~~v~~-~~sGseA~e~Aik~ar~~t~~ 184 (447)
-+|+|.+|+.+.+..... .. .+ -....+.+.+++|++++..+ ..+|+| +.||||+++++++-.. .+
T Consensus 16 ~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~---~~ 92 (361)
T 3m5u_A 16 LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA---LN 92 (361)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC---CS
T ss_pred CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC---CC
Confidence 479999999987753211 00 01 11345677888899888654 346777 9999999999998543 33
Q ss_pred CeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEcccc
Q 013235 185 NDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQ 264 (447)
Q Consensus 185 ~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~ 264 (447)
+++.....+.++... ..... ++ ...+..++.+. .+.+..+. ++ + +. + ++..|.+--+.
T Consensus 93 ~~~~~i~~~~~~~~~-~~~a~-----~~---G~~v~~~~~~~--~g~~~~~~----~~-~--l~---~-~t~lv~~~~~e 150 (361)
T 3m5u_A 93 GVCEYANTGVWTKKA-IKEAQ-----IL---GVNVKTVASSE--ESNFDHIP----RV-E--FS---D-NADYAYICSNN 150 (361)
T ss_dssp SCEEEEECSHHHHHH-HHHHH-----HT---TCCEEEEEECT--TTTSCSCC----CC-C--CC---T-TSSEEEEESEE
T ss_pred CeEEEEeCCHHHHHH-HHHHH-----Hc---CCceEEEeccc--CcCCCcCC----hh-h--cC---C-CCCEEEEeCCC
Confidence 444333334444321 11110 00 01233443321 11110011 11 2 22 2 34455554444
Q ss_pred CCCceeeCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee--ccccCCccccccccCHHHH
Q 013235 265 GVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA--KGIGNGIPLGAVVTTPEIA 342 (447)
Q Consensus 265 ~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s--K~lg~G~pigav~~~~~i~ 342 (447)
...|.+.++ +++ +|+++++|-+|+ +|.. ..-++ ..|++++| |.+| .--+|+++.++++.
T Consensus 151 ~~tG~~~~~---------i~~-~~~~~~vD~~q~-~g~~---~id~~----~~d~~~~s~~K~~g-p~G~g~l~~~~~~~ 211 (361)
T 3m5u_A 151 TIYGTQYQN---------YPK-TKTPLIVDASSD-FFSR---KVDFS----NIALFYGGVQKNAG-ISGLSCIFIRKDML 211 (361)
T ss_dssp TTTTEECSS---------CCC-CSSCEEEECGGG-TTSS---CCCCT----TEEEEEEETTTTSS-CTTCEEEEEEHHHH
T ss_pred CCcceeCCc---------ccc-cCCEEEEEcccc-cCCC---CCCcc----cCCEEEEechhccC-CCccEEEEEcHHHH
Confidence 455887542 333 499999999997 4421 11122 24888877 8884 22368888999887
Q ss_pred HhhcC---Cc---------ccccCCC-ChHHHHHHHHHHHHHhhh-h---HHHHHHHHHHHHHHHHHHHHHhcCCeee--
Q 013235 343 EVLTR---RN---------YFNTFGG-NPVCTAAGHAVLKVIQKD-K---LQNNAHVVGSYLKERLTALKDKYGIIGD-- 403 (447)
Q Consensus 343 ~~l~~---~~---------~~~T~~~-np~a~aaala~L~~i~~~-~---l~~~~~~~g~~l~~~L~~l~~~~~~i~~-- 403 (447)
+.+.+ .. ...+++. |..+..+..++|+.+++. + ..++.+++.++|+++|+++-.-+....+
T Consensus 212 ~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~ 291 (361)
T 3m5u_A 212 ERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKK 291 (361)
T ss_dssp HHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGG
T ss_pred hhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHH
Confidence 66543 00 1123343 344455556789988765 3 4566667777777777654100000011
Q ss_pred EeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235 404 VRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ 446 (447)
Q Consensus 404 vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~ 446 (447)
.|. ...+.+.+.+. + ... ..+...|.++||.+..+
T Consensus 292 ~rs-~~ivsf~~~~~-----~-~~~-~~~~~~L~~~gI~~~~g 326 (361)
T 3m5u_A 292 DRS-LMNVSFNIAKN-----K-DLE-PLFVKEAEEAGMIGLKG 326 (361)
T ss_dssp GBC-SSEEEEEESSC-----T-THH-HHHHHHHHHTTEECCBC
T ss_pred HcC-CeEEEEECCCc-----h-hhh-HHHHHHHHHCCCEEecC
Confidence 111 23455555220 0 111 35778888999988643
No 235
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=98.66 E-value=8.3e-08 Score=96.16 Aligned_cols=288 Identities=10% Similarity=0.023 Sum_probs=149.1
Q ss_pred CeEEEecCCcccccCCCCCHHHHHHHHHHHHhcc----------cccccccchHHHHHHHHHHHhCCCCC-ceEEE-cCC
Q 013235 99 RRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ----------HSTVLYLNHAIADFAEALASKMPGNL-KVVFF-TNS 166 (447)
Q Consensus 99 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~l~~~~----------~~~~~~~~~~~~elae~L~~~~~~~~-~~v~~-~~s 166 (447)
+.|||-.+... -+|+|.+|+.+.+.... |... -....+.+.+++|++++..+. ++|+| +.|
T Consensus 27 ~~yl~~agpt~------~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~-~~~~~~~~ar~~la~ll~~~~~~evif~t~~ 99 (386)
T 3qm2_A 27 QVFNFSSGPAM------LPAEVLKLAQQELCDWHGLGTSVMEISHRGK-EFIQVAEEAEQDFRDLLNIPSNYKVLFCHGG 99 (386)
T ss_dssp CCEECCSSSCC------CCHHHHHHHTCC------------------------CCHHHHHHHHHHHTCCTTEEEEEEESC
T ss_pred cCccccCCCCC------CCHHHHHHHHHHHHhccccCccccccCCCCH-HHHHHHHHHHHHHHHHhCCCCCceEEEEcCC
Confidence 46787543222 47999999987664321 1000 012344677788888886543 45777 699
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhhhccCCCCccccccCCCeEeecCCCCcCCCCC--CChHHHHHHHH
Q 013235 167 GTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFG--ADGEMYAKDVQ 244 (447)
Q Consensus 167 GseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~--~d~~~~~~~le 244 (447)
|||+++++++-.. ..++++++...+.++.. +...... + ..+..++.+.. .++ .+ .++++
T Consensus 100 ~T~a~n~ai~~l~--~~gd~v~~~~~~~~~~~-~~~~a~~---~------G~v~~v~~~~~---~~G~~~~----~~~~~ 160 (386)
T 3qm2_A 100 GRGQFAGVPLNLL--GDKTTADYVDAGYWAAS-AIKEAKK---Y------CAPQIIDAKIT---VDGKRAV----KPMRE 160 (386)
T ss_dssp TTHHHHHHHHHHC--TTCCEEEEEESSHHHHH-HHHHHTT---T------SEEEEEECEEE---ETTEEEE----CCGGG
T ss_pred chHHHHHHHHhcc--CCCCeEEEEeCCHHHHH-HHHHHHH---h------CCeEEEecCcc---cCCCCCC----chHHH
Confidence 9999999997542 24567766666666542 2111100 0 01333332200 011 01 12233
Q ss_pred HHHHccCCCCeEEEEEccccCCCcee-eCCCChHHHHHHHHHHhCCEEEEeccccCccccCCCcccccccCCCCCEEEee
Q 013235 245 DLIDFGTSGHVAGFLSESIQGVGGII-ELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMA 323 (447)
Q Consensus 245 ~~i~~~~~~~~aavi~Epi~~~gG~~-~~~~~~l~~l~~l~~~~g~llI~DEv~tGfgr~G~~~~~~~~~gv~pDivt~s 323 (447)
+.+. .++..|.+--+....|.+ .| +++| + +|+++++|=+|+ +|. ...-++.+| ++++|
T Consensus 161 ~~l~----~~t~lV~~~h~et~tG~~i~p----i~~i---~--~g~~~~vDa~qs-~g~---~pidv~~~~----~~~~s 219 (386)
T 3qm2_A 161 WQLS----DNAAYLHYCPNETIDGIAIDE----TPDF---G--PEVVVTADFSST-ILS---APLDVSRYG----VIYAG 219 (386)
T ss_dssp CCCC----TTCSCEEECSEETTTTEECCC----CCCC---C--TTCCEEEECTTT-TTS---SCCCGGGCS----EEEEE
T ss_pred hhcC----CCCcEEEEECCcCCcCEecCc----hhhh---c--CCCEEEEEcccc-cCC---CCCCccccC----EEEEe
Confidence 2222 245556666666667886 54 3333 2 899999999996 542 122234443 45555
Q ss_pred --ccccCCccccccccCHHHHHhhcCC-----------cccccCC-CChHHHHHHHHHHHHHhhh----hHHHHHHHHHH
Q 013235 324 --KGIGNGIPLGAVVTTPEIAEVLTRR-----------NYFNTFG-GNPVCTAAGHAVLKVIQKD----KLQNNAHVVGS 385 (447)
Q Consensus 324 --K~lg~G~pigav~~~~~i~~~l~~~-----------~~~~T~~-~np~a~aaala~L~~i~~~----~l~~~~~~~g~ 385 (447)
|.+| -.-+|++..++++.+.+.+. .....++ -|..+.++..++|+.+.++ +..++.+++.+
T Consensus 220 ~hK~lG-P~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~ 298 (386)
T 3qm2_A 220 AQKNIG-PAGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAE 298 (386)
T ss_dssp TTTTTC-CTTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cccccC-CCccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8884 22367788887764332210 0011222 2344555566788887664 34556666777
Q ss_pred HHHHHHHHHHHhcCCeeeE---eec-ceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeecc
Q 013235 386 YLKERLTALKDKYGIIGDV---RGR-GFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFSQ 446 (447)
Q Consensus 386 ~l~~~L~~l~~~~~~i~~v---rg~-Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~~ 446 (447)
+|+++|+++ ++.... ..+ ...+.+.+.+. ... ..+...|.++||.++.+
T Consensus 299 ~l~~~l~~~----~~~~~~~~~~~rs~~iv~f~~~~~-------~~~-~~~~~~L~~~gI~~~~g 351 (386)
T 3qm2_A 299 LLYGVIDNS----DFYRNDVAQANRSRMNVPFQLADN-------TLD-KVFLEESFAAGLHALKG 351 (386)
T ss_dssp HHHHHHHTC----SSEECCBCGGGBCSSEEEEEESSG-------GGH-HHHHHHHHHTTEECCBC
T ss_pred HHHHHHHHC----CCcccCCCHHHcCceEEEEECCCc-------ccc-HHHHHHHHHCCCEEeCC
Confidence 777777654 322111 111 23455655211 111 45777788999987653
No 236
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=97.87 E-value=0.00039 Score=69.91 Aligned_cols=182 Identities=11% Similarity=0.035 Sum_probs=99.6
Q ss_pred HHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEecccc-CccccCCCcccccccCCCCC
Q 013235 240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA-GFARTGSHFWGFEAHGVVPD 318 (447)
Q Consensus 240 ~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-Gfgr~G~~~~~~~~~gv~pD 318 (447)
.++++++..+. ++..||+-. ..-+-+--+++++++|++.|++|++|=+|. |+--.| .+- .-+. ..|
T Consensus 192 yd~~~~~A~~~---kPklIi~G~------SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g--~~p-sP~~-~AD 258 (490)
T 3ou5_A 192 YNQLALTARLF---RPRLIIAGT------SAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAK--VIP-SPFK-HAD 258 (490)
T ss_dssp HHHHHHHHHHH---CCSEEEECC------SSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTT--SSC-CGGG-TCS
T ss_pred HHHHHHHHhhc---CCCeEEECC------ccCccccCHHHHHHHHhhcccEEEechhhhhhhhccc--ccC-Cccc-cce
Confidence 57787777665 445677643 122222338999999999999999999864 332222 221 1122 269
Q ss_pred EEEee--ccccCCccccccccCH---------------HHHHhhcCCcccccCCCChHHHHHHHHH-HHHHhh---hhHH
Q 013235 319 IVTMA--KGIGNGIPLGAVVTTP---------------EIAEVLTRRNYFNTFGGNPVCTAAGHAV-LKVIQK---DKLQ 377 (447)
Q Consensus 319 ivt~s--K~lg~G~pigav~~~~---------------~i~~~l~~~~~~~T~~~np~a~aaala~-L~~i~~---~~l~ 377 (447)
+||.+ |.|.| -+-|.+++++ ++.+.+....+....+|+-.-..||+++ +....+ .+++
T Consensus 259 vVTtTTHKTLrG-PrGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya 337 (490)
T 3ou5_A 259 IVTTTTHKTLRG-ARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYS 337 (490)
T ss_dssp EEEEESSSTTCS-CSCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred EEeccccccccC-CCceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHH
Confidence 99876 88864 2224455544 3444454433445555654444455543 433222 2466
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCceeec
Q 013235 378 NNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALFFS 445 (447)
Q Consensus 378 ~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv~~ 445 (447)
+++.++.+.|-+.|.+. .+.++..-.- --++.+++.... ....+..+.|-+-||.+..
T Consensus 338 ~qVv~NAkaLA~~L~~~--G~~vvsGgTd-nHlvLvDl~~~g-------~tG~~ae~~Le~agItvNk 395 (490)
T 3ou5_A 338 LQVLKNARAMADALLER--GYSLVSGGTD-NHLVLVDLRPKG-------LDGARAERVLELVSITANK 395 (490)
T ss_dssp HHHHHHHHHHHHHHHHT--TCEEGGGSCS-SSEEEEECGGGT-------CCHHHHHHHHHHTTEECEE
T ss_pred HHHHHHHHHHHHHHHhC--CCeeecCCCC-ceEEEEeccccC-------CCHHHHHHHHHHcCcEECC
Confidence 77777788887777664 4443321000 123344543211 0123444556677988864
No 237
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=66.23 E-value=7.1 Score=30.26 Aligned_cols=53 Identities=9% Similarity=0.232 Sum_probs=37.0
Q ss_pred HHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCch
Q 013235 145 DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199 (447)
Q Consensus 145 elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~ 199 (447)
++.+.+.+.++.+...|++|.+|..+..++-.+... |-++|..++|+|.++..
T Consensus 40 ~l~~~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~--G~~~v~~l~GG~~~W~~ 92 (106)
T 3hix_A 40 DLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSA--GFEHVSELKGGLAAWKA 92 (106)
T ss_dssp GHHHHHHHHSCTTSCEEEECSSHHHHHHHHHHHHHT--TCSCEEECTTHHHHHHH
T ss_pred HHHHHHHhcCCCCCeEEEEECCCChHHHHHHHHHHc--CCcCEEEecCCHHHHHH
Confidence 344455455665667888999998877776665443 66678889998876654
No 238
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=58.35 E-value=13 Score=28.77 Aligned_cols=54 Identities=9% Similarity=0.140 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchh
Q 013235 144 ADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG 200 (447)
Q Consensus 144 ~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~ 200 (447)
.++.+.+.+ ++.+...|++|.+|..+..++-.+... |-++|..++|+|.++...
T Consensus 46 ~~l~~~~~~-l~~~~~ivvyc~~g~rs~~a~~~L~~~--G~~~v~~l~GG~~~W~~~ 99 (108)
T 1gmx_A 46 DTLGAFMRD-NDFDTPVMVMCYHGNSSKGAAQYLLQQ--GYDVVYSIDGGFEAWQRQ 99 (108)
T ss_dssp HHHHHHHHH-SCTTSCEEEECSSSSHHHHHHHHHHHH--TCSSEEEETTHHHHHHHH
T ss_pred HHHHHHHHh-cCCCCCEEEEcCCCchHHHHHHHHHHc--CCceEEEecCCHHHHHHh
Confidence 345555555 455567888999998887777666554 667788999998776543
No 239
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=52.95 E-value=19 Score=29.61 Aligned_cols=42 Identities=17% Similarity=0.297 Sum_probs=29.6
Q ss_pred CCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCch
Q 013235 156 GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199 (447)
Q Consensus 156 ~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~ 199 (447)
.+...|++|.+|.-+..+|..+... |-++|..++|+|-++..
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~--G~~~v~~l~GG~~~w~~ 120 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEA--GITPAYNVLDGFEGHLD 120 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHT--TCCSEEEETTTTTCCCC
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHc--CCcceEEEcCChhhhhh
Confidence 3456788999998776666554443 66689999999977754
No 240
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=52.78 E-value=39 Score=24.52 Aligned_cols=51 Identities=14% Similarity=0.294 Sum_probs=32.9
Q ss_pred HHHHHHHHHhC-CCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccC
Q 013235 144 ADFAEALASKM-PGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGN 197 (447)
Q Consensus 144 ~elae~L~~~~-~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~ 197 (447)
.++.+.+.+.- +.+...|++|.+|..+..++-.+... |-+.+..+ +++..+
T Consensus 27 ~~l~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~--G~~~v~~l-GG~~~w 78 (85)
T 2jtq_A 27 KEVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEM--GYTHVENA-GGLKDI 78 (85)
T ss_dssp HHHHHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHT--TCSSEEEE-EETTTC
T ss_pred HHHHHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHc--CCCCEEec-cCHHHH
Confidence 44555666552 33456788899998888777766554 55666666 766544
No 241
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=51.93 E-value=13 Score=30.65 Aligned_cols=54 Identities=9% Similarity=0.200 Sum_probs=37.6
Q ss_pred HHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchh
Q 013235 145 DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG 200 (447)
Q Consensus 145 elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~ 200 (447)
++.+.+...++.+...|++|.+|.-+..++..+... |-++|..++|++.+|...
T Consensus 44 ~l~~~~~~~l~~~~~ivvyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~W~~~ 97 (141)
T 3ilm_A 44 DLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSA--GFEHVSELKGGLAAWKAI 97 (141)
T ss_dssp GHHHHHHTTSCTTSEEEEECSSHHHHHHHHHHHHHT--TCCSEEECTTHHHHHHHT
T ss_pred HHHHHHHhcCCCCCeEEEEECCChHHHHHHHHHHHc--CCCCEEEecCHHHHHHHC
Confidence 344455445555566788899998888777665444 666788899998776543
No 242
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=50.18 E-value=14 Score=28.59 Aligned_cols=53 Identities=11% Similarity=0.213 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchh
Q 013235 144 ADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG 200 (447)
Q Consensus 144 ~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~ 200 (447)
.++.+.+.+. +.+...|++|.+|.-+..++-.+... |- ++..++|+|.++...
T Consensus 43 ~~l~~~~~~l-~~~~~ivvyC~~G~rs~~aa~~L~~~--G~-~v~~l~GG~~~W~~~ 95 (108)
T 3gk5_A 43 SELREKWKIL-ERDKKYAVICAHGNRSAAAVEFLSQL--GL-NIVDVEGGIQSWIEE 95 (108)
T ss_dssp HHHHHHGGGS-CTTSCEEEECSSSHHHHHHHHHHHTT--TC-CEEEETTHHHHHHHT
T ss_pred HHHHHHHHhC-CCCCeEEEEcCCCcHHHHHHHHHHHc--CC-CEEEEcCcHHHHHHc
Confidence 3455555443 55567889999998887766655433 55 899999999876543
No 243
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=46.21 E-value=11 Score=30.33 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=32.5
Q ss_pred hCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCch
Q 013235 153 KMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199 (447)
Q Consensus 153 ~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~ 199 (447)
.++.+...|++|.+|.-+..++..+... |-++|..++|++.+|..
T Consensus 78 ~l~~~~~ivvyC~~G~rs~~aa~~L~~~--G~~~v~~l~GG~~~W~~ 122 (129)
T 1tq1_A 78 HFGQSDNIIVGCQSGGRSIKATTDLLHA--GFTGVKDIVGGYSAWAK 122 (129)
T ss_dssp TCCTTSSEEEEESSCSHHHHHHHHHHHH--HCCSEEEEECCHHHHHH
T ss_pred hCCCCCeEEEECCCCcHHHHHHHHHHHc--CCCCeEEeCCcHHHHHh
Confidence 3455567788999998887777766554 55678889999876643
No 244
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=44.85 E-value=1.6e+02 Score=27.07 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=22.0
Q ss_pred HHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235 241 KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (447)
Q Consensus 241 ~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI 292 (447)
.+|.++++.....++.+|++||..+. . -+..++++.|+.++
T Consensus 224 ~~l~~l~~~ik~~~v~~If~e~~~~~--------~---~~~~ia~~~g~~v~ 264 (291)
T 1pq4_A 224 QELKQLIDTAKENNLTMVFGETQFST--------K---SSEAIAAEIGAGVE 264 (291)
T ss_dssp HHHHHHHHHHHTTTCCEEEEETTSCC--------H---HHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCh--------H---HHHHHHHHcCCeEE
Confidence 34444443332446778888875432 1 22445677776554
No 245
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=43.04 E-value=1.8e+02 Score=26.72 Aligned_cols=125 Identities=11% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCc
Q 013235 119 YVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA 198 (447)
Q Consensus 119 ~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~ 198 (447)
.+.+++.+.|.+.......+.......+.++| ++.+..++-...-.+++.+|++.++| ++.
T Consensus 132 ~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L------------------~~Ld~~~~~~l~~~~~~~~v~~H~af-~Yf 192 (286)
T 3gi1_A 132 EEAVNIAKELGRLDPKHKDSYTKNAKAFKKEA------------------EQLTEEYTQKFKKVRSKTFVTQHTAF-SYL 192 (286)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH------------------HHHHHHHHHHHTTCSCCEEEEEESCC-HHH
T ss_pred HHHHHHHHHHHHHChhhHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhcCCCCEEEEECCch-HHH
Q ss_pred hhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHH
Q 013235 199 AGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLP 278 (447)
Q Consensus 199 ~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~ 278 (447)
.....+ ....+.-..+...|- ..+|.++++.....++.+|++||..+ =+
T Consensus 193 ~~~yGl-------------~~~~~~~~~~~~eps-------~~~l~~l~~~ik~~~v~~if~e~~~~-----------~~ 241 (286)
T 3gi1_A 193 AKRFGL-------------KQLGISGISPEQEPS-------PRQLKEIQDFVKEYNVKTIFAEDNVN-----------PK 241 (286)
T ss_dssp HHHTTC-------------EEEEEECSCC---CC-------HHHHHHHHHHHHHTTCCEEEECTTSC-----------TH
T ss_pred HHHCCC-------------eEeeccccCCCCCCC-------HHHHHHHHHHHHHcCCCEEEEeCCCC-----------hH
Q ss_pred HHHHHHHHhCCEEEE
Q 013235 279 AVYKSIKKAGGLCIA 293 (447)
Q Consensus 279 ~l~~l~~~~g~llI~ 293 (447)
-+..++++.|+.++.
T Consensus 242 ~~~~la~~~g~~v~~ 256 (286)
T 3gi1_A 242 IAHAIAKSTGAKVKT 256 (286)
T ss_dssp HHHHHHHTTTCEEEE
T ss_pred HHHHHHHHhCCeEEE
No 246
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=41.58 E-value=44 Score=30.92 Aligned_cols=129 Identities=9% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCc
Q 013235 119 YVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA 198 (447)
Q Consensus 119 ~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~ 198 (447)
.+.+++.+.|.+.......+.......+.++|.++ --+..-+++..-.+++.+|++.++| |+.
T Consensus 114 ~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~l----------------d~~~~~~l~~~~~~~~~~vt~H~af-~Y~ 176 (282)
T 3mfq_A 114 SAVAVASEELQKLLPAKAEMIQKNTEKYQAQLDDL----------------HAWVEKELSVIPKESRYLVTPHDAF-NYF 176 (282)
T ss_dssp HHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHH----------------HHHHHHHHTTSCGGGCEEECSSSCC-HHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHH----------------HHHHHHHHhcCCccCcEEEEECchH-HHH
Q ss_pred hhhhhccCCCCccccccC-CCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChH
Q 013235 199 AGTMGATAQSNWKFNVVQ-TGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYL 277 (447)
Q Consensus 199 ~~~~~~t~~~~~~~~~~~-~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l 277 (447)
.....+............ ++ ..+|.++++.....++.+|++||.. ++...
T Consensus 177 ~~~yGl~~~~~~~~~~~~eps---------------------~~~l~~l~~~ik~~~v~~if~e~~~--------~~~~~ 227 (282)
T 3mfq_A 177 AASYDFTLYAPQGVSTDSEVA---------------------NSDMIETVNLIIDHNIKAIFTESTT--------NPERM 227 (282)
T ss_dssp HHHTTCEEECSSCSSSCSCCC---------------------HHHHHHHHHHHHHHTCCEEECBTTS--------CTHHH
T ss_pred HHHCCCeEecccccCCCCCCC---------------------HHHHHHHHHHHHHcCCCEEEEeCCC--------ChHHH
Q ss_pred HHHHHHHHHhCCEEEE
Q 013235 278 PAVYKSIKKAGGLCIA 293 (447)
Q Consensus 278 ~~l~~l~~~~g~llI~ 293 (447)
+.|.+++++.|+.++.
T Consensus 228 ~~l~~~a~~~g~~v~~ 243 (282)
T 3mfq_A 228 KKLQEAVKAKGGQVEV 243 (282)
T ss_dssp HHHHHHHHTTSCCCEE
T ss_pred HHHHHHHHhcCCceEE
No 247
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=40.73 E-value=24 Score=31.16 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=28.5
Q ss_pred CeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235 254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (447)
Q Consensus 254 ~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI 292 (447)
.++++|+|=+.+..|.... +.++.+++++||..+|
T Consensus 159 ~Pa~vicEi~~~~dG~mar----~~~l~~fA~~h~l~ii 193 (204)
T 1tks_A 159 QPAGVICELVRDEDGLMMR----LDDCIQFGKKHGIKII 193 (204)
T ss_dssp CSBEEEEEBBCTTTCCBCB----HHHHHHHHHHHTCCEE
T ss_pred CceEEEEEEeECCCCCcCC----HHHHHHHHHHcCCcEE
Confidence 6799999976355565554 8999999999999887
No 248
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=39.24 E-value=70 Score=24.49 Aligned_cols=44 Identities=20% Similarity=0.151 Sum_probs=31.0
Q ss_pred CCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchh
Q 013235 154 MPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAG 200 (447)
Q Consensus 154 ~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~ 200 (447)
++.+...|++|.+|.-+..+|..+... |-+. ..++|++.++...
T Consensus 53 ~~~~~~ivvyC~~G~rs~~aa~~L~~~--G~~~-~~l~GG~~~W~~~ 96 (110)
T 2k0z_A 53 QHKDKKVLLHCRAGRRALDAAKSMHEL--GYTP-YYLEGNVYDFEKY 96 (110)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHT--TCCC-EEEESCGGGTTTT
T ss_pred cCCCCEEEEEeCCCchHHHHHHHHHHC--CCCE-EEecCCHHHHHHC
Confidence 444566788999998877776655443 5455 7889999877654
No 249
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=38.92 E-value=37 Score=30.05 Aligned_cols=53 Identities=11% Similarity=0.062 Sum_probs=31.3
Q ss_pred HHHHHHHHHccCCCCeEEEEEccccCC---Ccee-eCCCChHHHHHHHHHHhCCEEE
Q 013235 240 AKDVQDLIDFGTSGHVAGFLSESIQGV---GGII-ELAPGYLPAVYKSIKKAGGLCI 292 (447)
Q Consensus 240 ~~~le~~i~~~~~~~~aavi~Epi~~~---gG~~-~~~~~~l~~l~~l~~~~g~llI 292 (447)
.+.|+++++.........|++.|..-. .|.+ .....|-+.++++|+++|+.+|
T Consensus 111 ~~~l~~~i~~~~~~g~~vil~tp~p~~~~~~~~~~~~~~~y~~~~~~vA~~~~v~~i 167 (233)
T 1k7c_A 111 PAYLENAAKLFTAKGAKVILSSQTPNNPWETGTFVNSPTRFVEYAELAAEVAGVEYV 167 (233)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCCCCTTTTSSCCCCCCHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCccccCCCccccchHHHHHHHHHHHHHhCCeEE
Confidence 445555554321112346777775322 1321 2334677899999999998877
No 250
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=38.56 E-value=49 Score=26.51 Aligned_cols=48 Identities=17% Similarity=0.282 Sum_probs=32.2
Q ss_pred HHHHHHhC--CCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCccc
Q 013235 147 AEALASKM--PGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHG 196 (447)
Q Consensus 147 ae~L~~~~--~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG 196 (447)
.++|.+.+ +.+...|++|.+|.-+..+|-.+... |-.++..+.++|.|
T Consensus 62 ~~~l~~~~~~~~~~~ivv~C~sG~RS~~aa~~L~~~--G~~~v~~l~GG~~~ 111 (134)
T 1vee_A 62 LKKLSLKFKDPENTTLYILDKFDGNSELVAELVALN--GFKSAYAIKDGAEG 111 (134)
T ss_dssp HHHHHTTCSCGGGCEEEEECSSSTTHHHHHHHHHHH--TCSEEEECTTTTTS
T ss_pred HHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHc--CCcceEEecCCccC
Confidence 34444443 23445788899998776666555443 66789999999965
No 251
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=37.47 E-value=2.6e+02 Score=26.03 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=28.3
Q ss_pred HHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235 240 AKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (447)
Q Consensus 240 ~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI 292 (447)
..+|.++++.....++.+|++||..+. +-+..++++.|+.++
T Consensus 225 ~~~l~~l~~~ik~~~v~~If~e~~~~~-----------~~~~~ia~e~g~~v~ 266 (312)
T 2o1e_A 225 AASLAKLKTYAKEHNVKVIYFEEIASS-----------KVADTLASEIGAKTE 266 (312)
T ss_dssp HHHHHHHHHHTTSSCCCEEECSSCCCH-----------HHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCh-----------HHHHHHHHHhCCcEE
Confidence 456666666555568889999986531 345666788888764
No 252
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=37.20 E-value=35 Score=30.16 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=27.6
Q ss_pred CeEEEEEccc-cCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235 254 HVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (447)
Q Consensus 254 ~~aavi~Epi-~~~gG~~~~~~~~l~~l~~l~~~~g~llI 292 (447)
.++++|+|=+ .+..|...- +.++.+++++||+.+|
T Consensus 158 ~Pa~vicEiv~~~~dG~mar----~~~l~~fA~~h~l~~i 193 (206)
T 3mio_A 158 QPAGAICEIVSQKDEGSMAH----TDELRVFADEHGLALI 193 (206)
T ss_dssp CSBEEEEEBBCSSSTTSBCC----HHHHHHHHHHHTCEEE
T ss_pred CceEEEEEEeeeCCCCCcCC----HHHHHHHHHHcCCcEE
Confidence 6799999972 344555544 8999999999999988
No 253
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=37.07 E-value=5.2 Score=32.03 Aligned_cols=64 Identities=17% Similarity=0.101 Sum_probs=44.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCeeeEeecceeEEEEEeeCCCCCCCCHHHHHHHHHHHHhCCcee
Q 013235 369 KVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMDKMKGICALF 443 (447)
Q Consensus 369 ~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~giel~~~~~~~~p~~~~~~~~~~~l~~~Gvlv 443 (447)
..+.++++.++.+++.+..-+-+.++.+.|.-++-=|..=+++||. ...+..+++.+.++|++=
T Consensus 15 ~~l~d~el~~rar~LA~kIv~pv~el~~~hTTvSVERtVlr~mGid-----------gvda~~iVd~~~e~gLLg 78 (121)
T 3kp1_E 15 ANLSDEELQTRFWEMAEKIVDPLLDLGKKNTTPSIERSVLLRMGFS-----------SLEAKAIVDKTMDRGLMG 78 (121)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHTTCC-----------HHHHHHHHHHHHHTTCGG
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHhCCC-----------ccchHHHHHHHHHccccc
Confidence 3356788999999999999999999998885443223333333332 233456889999988763
No 254
>3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus}
Probab=34.99 E-value=2.7e+02 Score=25.64 Aligned_cols=54 Identities=15% Similarity=-0.006 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEEEe
Q 013235 235 DGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIAD 294 (447)
Q Consensus 235 d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI~D 294 (447)
|.+...++|++.++.. ...+|-+.|..+ | ..+....+..+.+.|.++|+++.+-
T Consensus 108 ~~~~a~~el~r~~~~~---G~~Gv~l~~~~~--~-~~l~d~~~~p~~~~~~e~g~pv~iH 161 (312)
T 3ij6_A 108 NIESACKVISSIKDDE---NLVGAQIFTRHL--G-KSIADKEFRPVLAQAAKLHVPLWMH 161 (312)
T ss_dssp CHHHHHHHHHHHHHCT---TEEEEEEESEET--T-EETTSTTTHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHHHHHhC---CCceEeccCCCC--C-CCCCCccHHHHHHHHHHcCCeEEEc
Confidence 3444467788876532 466777766422 3 3345556789999999999998765
No 255
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=33.42 E-value=32 Score=27.23 Aligned_cols=53 Identities=17% Similarity=0.338 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCC-CceEEEc-CCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCch
Q 013235 143 IADFAEALASKMPGN-LKVVFFT-NSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199 (447)
Q Consensus 143 ~~elae~L~~~~~~~-~~~v~~~-~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~ 199 (447)
..++.+.+.+. +.+ ...|++| .+|.-+..++..+... |- ++..++|+|.++..
T Consensus 75 ~~~~~~~~~~~-~~~~~~ivvyC~~~G~rs~~a~~~L~~~--G~-~v~~l~GG~~~W~~ 129 (134)
T 3g5j_A 75 LKDIYLQAAEL-ALNYDNIVIYCARGGMRSGSIVNLLSSL--GV-NVYQLEGGYKAYRN 129 (134)
T ss_dssp HHHHHHHHHHH-HTTCSEEEEECSSSSHHHHHHHHHHHHT--TC-CCEEETTHHHHHHH
T ss_pred HHHHHHHHHHh-ccCCCeEEEEECCCChHHHHHHHHHHHc--CC-ceEEEeCcHHHHHH
Confidence 34566666554 333 4567778 5887777666655433 55 78889998876543
No 256
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=33.06 E-value=75 Score=23.41 Aligned_cols=40 Identities=15% Similarity=0.261 Sum_probs=28.6
Q ss_pred CCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCc
Q 013235 155 PGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA 198 (447)
Q Consensus 155 ~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~ 198 (447)
+. ...|++|.+|.-+..++-.+... |-+ +..++|++.++.
T Consensus 52 ~~-~~ivvyC~~g~rs~~a~~~L~~~--G~~-v~~l~GG~~~W~ 91 (94)
T 1wv9_A 52 PR-RPLLLVCEKGLLSQVAALYLEAE--GYE-AMSLEGGLQALT 91 (94)
T ss_dssp CS-SCEEEECSSSHHHHHHHHHHHHH--TCC-EEEETTGGGCC-
T ss_pred CC-CCEEEEcCCCChHHHHHHHHHHc--CCc-EEEEcccHHHHH
Confidence 44 56788899998877766665443 555 888999987664
No 257
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=32.29 E-value=57 Score=29.61 Aligned_cols=55 Identities=7% Similarity=0.237 Sum_probs=37.3
Q ss_pred HHHHHHHHHh-CCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCch
Q 013235 144 ADFAEALASK-MPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199 (447)
Q Consensus 144 ~elae~L~~~-~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~ 199 (447)
.++.+.+.+. .+.+...|++|.+|.-|..++..+.. .-|-.++..++|++.+|..
T Consensus 212 ~~l~~~~~~~~~~~~~~iv~yC~~G~rs~~a~~~L~~-~~G~~~v~~l~GG~~~W~~ 267 (277)
T 3aay_A 212 EELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRE-LLGHQNVKNYDGSWTEYGS 267 (277)
T ss_dssp HHHHHHHHHHTCCTTSCEEEECSSHHHHHHHHHHHHT-TSCCSCEEEESSHHHHHTT
T ss_pred HHHHHHHHHcCCCCCCCEEEEcCcHHHHHHHHHHHHH-HcCCCcceeeCchHHHHhc
Confidence 3566666653 34455678899999988766655442 1266788899999876643
No 258
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=31.97 E-value=1.6e+02 Score=27.06 Aligned_cols=125 Identities=10% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCc
Q 013235 119 YVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA 198 (447)
Q Consensus 119 ~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~ 198 (447)
.+.+++.+.|.+.......+.......+.++|.++ +..++-...-..++.+|++.++| ++.
T Consensus 130 ~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~L------------------d~~~~~~l~~~~~~~~v~~H~af-~Yf 190 (284)
T 3cx3_A 130 EEAQIIADKLSEVDSEHKETYQKNAQAFIKKAQEL------------------TKKFQPKFEKATQKTFVTQHTAF-SYL 190 (284)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHSCSCCCEEEEESCC-HHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH------------------HHHHHHHHhcCCCCEEEEECCch-HHH
Q ss_pred hhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHH
Q 013235 199 AGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLP 278 (447)
Q Consensus 199 ~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~ 278 (447)
.....+ ....+....+...+- ..+|.++++.....++.+|++||..+ =+
T Consensus 191 ~~~yGl-------------~~~~~~~~~~~~eps-------~~~l~~l~~~ik~~~v~~if~e~~~~-----------~~ 239 (284)
T 3cx3_A 191 AKRFGL-------------NQLGIAGISPEQEPS-------PRQLTEIQEFVKTYKVKTIFTESNAS-----------SK 239 (284)
T ss_dssp HHHTTC-------------CEEEEECSSTTCCCC-------SHHHHHHHHHHHHTTCCCEEECSSSC-----------CH
T ss_pred HHHcCC-------------EEeeccCCCCCCCCC-------HHHHHHHHHHHHHcCCCEEEEeCCCC-----------cH
Q ss_pred HHHHHHHHhCCEEEE
Q 013235 279 AVYKSIKKAGGLCIA 293 (447)
Q Consensus 279 ~l~~l~~~~g~llI~ 293 (447)
-+..++++.|+.++.
T Consensus 240 ~~~~ia~~~g~~v~~ 254 (284)
T 3cx3_A 240 VAETLVKSTGVGLKT 254 (284)
T ss_dssp HHHHHHSSSSCCEEE
T ss_pred HHHHHHHHcCCeEEE
No 259
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=31.63 E-value=46 Score=30.46 Aligned_cols=54 Identities=4% Similarity=0.143 Sum_probs=35.9
Q ss_pred HHHHHHHHHh-CCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCc
Q 013235 144 ADFAEALASK-MPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA 198 (447)
Q Consensus 144 ~elae~L~~~-~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~ 198 (447)
.++.+.+.+. ++.+...|++|.+|.-|-.++..+. ..-|-+++..++|++.+|.
T Consensus 219 ~~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~-~~~G~~~v~~l~GG~~~W~ 273 (285)
T 1uar_A 219 EELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLK-YLLGYPHVKNYDGSWTEWG 273 (285)
T ss_dssp HHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHH-TTSCCSCEEEESSHHHHHT
T ss_pred HHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHH-HHcCCCCcceeCchHHHHh
Confidence 4555666553 3444567888999988766665543 1226678889999987764
No 260
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=31.37 E-value=45 Score=29.72 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=27.4
Q ss_pred CeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235 254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (447)
Q Consensus 254 ~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI 292 (447)
.+++||+|=. +..|.... +.++.+++++||+.+|
T Consensus 167 ~Pa~vicEi~-~~dG~mar----~~~l~~fA~~h~l~~i 200 (217)
T 1g57_A 167 KPAGVLCELT-NDDGTMAR----APECIEFANKHNMALV 200 (217)
T ss_dssp CSCEEEEEBB-CTTSSBCC----HHHHHHHHHHTTCEEE
T ss_pred CceEEEEEEe-CCCCCccC----HHHHHHHHHHcCCCEE
Confidence 6799999966 44555544 8899999999999888
No 261
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=31.36 E-value=43 Score=30.04 Aligned_cols=34 Identities=9% Similarity=-0.052 Sum_probs=27.7
Q ss_pred CeEEEEEccccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235 254 HVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (447)
Q Consensus 254 ~~aavi~Epi~~~gG~~~~~~~~l~~l~~l~~~~g~llI 292 (447)
.+++||+|=+.-. |.... +.++.+++++||+.+|
T Consensus 178 ~Pa~VicEi~~dd-G~mar----~~~l~~fA~~h~l~~i 211 (227)
T 1snn_A 178 VPITTICEMMGDD-GNAMS----KNETKRYAEKHNLIYL 211 (227)
T ss_dssp CSEEEEEEEBCTT-SSBCC----HHHHHHHHHHHTCCEE
T ss_pred CceEEEEEEeCCC-CCcCC----HHHHHHHHHHcCCcEE
Confidence 6899999977544 55544 8999999999999888
No 262
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=30.19 E-value=36 Score=25.67 Aligned_cols=41 Identities=7% Similarity=0.188 Sum_probs=30.0
Q ss_pred CCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCc
Q 013235 155 PGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA 198 (447)
Q Consensus 155 ~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~ 198 (447)
+.+...|++|.+|.-+..++-.+... |- ++..++|+|.++.
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~--G~-~v~~l~GG~~~W~ 94 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQN--GV-NAVNVEGGMDEFG 94 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTT--TC-EEEEETTHHHHHC
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHC--CC-CEEEecccHHHHH
Confidence 44556788999998877776665443 55 8899999887654
No 263
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=28.44 E-value=39 Score=27.19 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=30.1
Q ss_pred CCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCch
Q 013235 156 GNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199 (447)
Q Consensus 156 ~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~ 199 (447)
.+...|++|.+|.-+..++..+... |-.+|..++|+|.++..
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~--G~~~v~~l~GG~~~W~~ 131 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSH--GYSNTSLYPGSMNDWVS 131 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTT--TCCSEEECTTHHHHHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHc--CCCCeEEeCCcHHHHHH
Confidence 3455788899998887776665443 65678888998876644
No 264
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=27.71 E-value=2.6e+02 Score=25.70 Aligned_cols=124 Identities=9% Similarity=-0.014 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCC--CeEEEEcCCccc
Q 013235 119 YVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGC--NDIISLRNAYHG 196 (447)
Q Consensus 119 ~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~--~~ii~~~~~yHG 196 (447)
.+.+++.+.|.+.......+......++.++|.+ .+.-++-...-.++ +.++++.++| +
T Consensus 134 ~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~------------------Ld~~~~~~l~~~~~~~~~~v~~H~af-~ 194 (294)
T 3hh8_A 134 IYSKNIAKQLIAKDPKNKETYEKNLKAYVAKLEK------------------LDKEAKSKFDAIAENKKLIVTSEGCF-K 194 (294)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH------------------HHHHHHHTTTTSCGGGCCEEEEESCC-H
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHH------------------HHHHHHHHHhhCCccCcEEEEECChH-H
Q ss_pred CchhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCCh
Q 013235 197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGY 276 (447)
Q Consensus 197 ~~~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~ 276 (447)
+......+ ....+....+...+- ..+|.++++.....++.+|++||..+
T Consensus 195 Yf~~~yGl-------------~~~~~~~~~~~~eps-------~~~l~~l~~~ik~~~v~~if~e~~~~----------- 243 (294)
T 3hh8_A 195 YFSKAYGV-------------PSAYIWEINTEEEGT-------PDQISSLIEKLKVIKPSALFVESSVD----------- 243 (294)
T ss_dssp HHHHHHTC-------------CEEEEESSCCSCCCC-------HHHHHHHHHHHHHSCCSCEEEETTSC-----------
T ss_pred HHHHHcCC-------------ceeeccccCCCCCCC-------HHHHHHHHHHHHHcCCCEEEEeCCCC-----------
Q ss_pred HHHHHHHHHHhCCEEE
Q 013235 277 LPAVYKSIKKAGGLCI 292 (447)
Q Consensus 277 l~~l~~l~~~~g~llI 292 (447)
=+.+..++++.|+.++
T Consensus 244 ~~~~~~ia~~~g~~v~ 259 (294)
T 3hh8_A 244 RRPMETVSKDSGIPIY 259 (294)
T ss_dssp SHHHHHHHHHHCCCEE
T ss_pred cHHHHHHHHHhCCcEE
No 265
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=26.42 E-value=44 Score=30.89 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=37.7
Q ss_pred HHHHHHHHHh-CCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCch
Q 013235 144 ADFAEALASK-MPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199 (447)
Q Consensus 144 ~elae~L~~~-~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~ 199 (447)
.++.+.+.+. ++.+...|++|.+|.-|..++..+... |-.++..++|++.+|..
T Consensus 226 ~~l~~~~~~~~~~~~~~ivv~C~sG~rs~~a~~~L~~~--G~~~v~~~~GG~~~W~~ 280 (296)
T 1rhs_A 226 EELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLC--GKPDVAIYDGSWFEWFH 280 (296)
T ss_dssp HHHHHHHHHTTCCTTSCEEEECSSSSTHHHHHHHHHHT--TCCCCEEESSHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHc--CCCCceeeCCcHHHHhc
Confidence 3555556542 344556788999998888777765543 66678889999877654
No 266
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=26.37 E-value=42 Score=25.39 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=30.1
Q ss_pred CCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCch
Q 013235 155 PGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199 (447)
Q Consensus 155 ~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~ 199 (447)
+.+...|++|.+|.-+..++..+... |- ++..++|+|.++..
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~--G~-~v~~l~GG~~~W~~ 95 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEAN--GI-DAVNVEGGMHAWGD 95 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTT--TC-EEEEETTHHHHHCS
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHC--CC-CeEEeCCCHHHHHH
Confidence 44556788999998777776665443 55 88899998876643
No 267
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=25.32 E-value=57 Score=26.30 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=33.6
Q ss_pred CCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhh
Q 013235 154 MPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTM 202 (447)
Q Consensus 154 ~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~ 202 (447)
++.+...|++|.+|.-+..++..+... |-++|..++|++.+|.....
T Consensus 79 l~~~~~ivvyC~~G~rS~~aa~~L~~~--G~~~v~~l~GG~~~W~~~g~ 125 (137)
T 1qxn_A 79 LDPEKPVVVFCKTAARAALAGKTLREY--GFKTIYNSEGGMDKWLEEGL 125 (137)
T ss_dssp CCTTSCEEEECCSSSCHHHHHHHHHHH--TCSCEEEESSCHHHHHHTTC
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHc--CCcceEEEcCcHHHHHHCCC
Confidence 344567888999998777766655443 66789999999977755433
No 268
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=24.99 E-value=46 Score=28.22 Aligned_cols=58 Identities=10% Similarity=0.034 Sum_probs=32.5
Q ss_pred ChHHHHHHHHHHHHccCCCCeEEEEEccccCCCce----eeCCCChHHHHHHHHHHhCCEEE
Q 013235 235 DGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGI----IELAPGYLPAVYKSIKKAGGLCI 292 (447)
Q Consensus 235 d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~----~~~~~~~l~~l~~l~~~~g~llI 292 (447)
+.+.+.+.++++++.........+++.|....... ...-..|-+.++++|+++|+.+|
T Consensus 111 ~~~~~~~~l~~~i~~~~~~~~~vil~~p~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~~v 172 (216)
T 3rjt_A 111 GIDEYRDTLRHLVATTKPRVREMFLLSPFYLEPNRSDPMRKTVDAYIEAMRDVAASEHVPFV 172 (216)
T ss_dssp CHHHHHHHHHHHHHHHGGGSSEEEEECCCCCCCCTTSHHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEECCCcCCCCcchHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 34555666777666533224556777654322100 01112366788899999997665
No 269
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=24.90 E-value=87 Score=28.41 Aligned_cols=53 Identities=13% Similarity=0.210 Sum_probs=34.5
Q ss_pred HHHHHHHHh-CCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCch
Q 013235 145 DFAEALASK-MPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199 (447)
Q Consensus 145 elae~L~~~-~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~ 199 (447)
++.+.+.+. ++.+...|++|.+|.-|..++..+... |-.++..++|++.++..
T Consensus 217 ~l~~~~~~~~~~~~~~ivv~C~~G~rs~~a~~~L~~~--G~~~v~~~~GG~~~W~~ 270 (280)
T 1urh_A 217 ELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATL--DVPNVKLYDGAWSEWGA 270 (280)
T ss_dssp HHHHHHHTTTCCSSSCEEEECCSSSTHHHHHHHHHHT--TCSSCEEECCSCCC---
T ss_pred HHHHHHHHcCCCCCCCEEEECChHHHHHHHHHHHHHc--CCCCceeeCChHHHHhc
Confidence 444444432 334456788899999888877765443 66678899999987753
No 270
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=24.33 E-value=50 Score=29.93 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=35.4
Q ss_pred HHHHHHHHHh-CCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCc
Q 013235 144 ADFAEALASK-MPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA 198 (447)
Q Consensus 144 ~elae~L~~~-~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~ 198 (447)
.++.+.+.+. ++.+...|++|.+|.-|..++..+... |-+++..++|++.++.
T Consensus 209 ~~l~~~~~~~~~~~~~~ivvyC~~G~rs~~a~~~L~~~--G~~~v~~l~GG~~~W~ 262 (271)
T 1e0c_A 209 TDIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKAL--GYPRVKGYAGSWGEWG 262 (271)
T ss_dssp TTHHHHHHHTTCCTTSEEEEECSSSSHHHHHHHHHHHT--TCSCEEECSSHHHHHT
T ss_pred HHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHc--CCCCceeeCCcHHHHh
Confidence 3455556542 344456788999998777666654433 6677889999887664
No 271
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=24.25 E-value=3e+02 Score=25.00 Aligned_cols=125 Identities=12% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcccccccccchHHHHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCc
Q 013235 119 YVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNA 198 (447)
Q Consensus 119 ~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~ 198 (447)
.+.+++.++|.+.......+.......+.++|.++- ..++-...-.+++.+|++.++| ++.
T Consensus 127 ~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld------------------~~~~~~l~~~~~~~~v~~H~af-~Yf 187 (284)
T 2prs_A 127 ATAVAIHGKLVELMPQSRAKLDANLKDFEAQLASTE------------------TQVGNELAPLKGKGYFVFHDAY-GYF 187 (284)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH------------------HHHHHHHGGGTTCCEEEEESCC-HHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHH------------------HHHHHHHhcCCCCeEEEECccH-HHH
Q ss_pred hhhhhccCCCCccccccCCCeEeecCCCCcCCCCCCChHHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCCChHH
Q 013235 199 AGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLP 278 (447)
Q Consensus 199 ~~~~~~t~~~~~~~~~~~~g~~~~~~p~~~~~~~~~d~~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~~~l~ 278 (447)
.....+ ....+....+-..|- ..+|.++++.....++.+|++||..+ =+
T Consensus 188 ~~~yGl-------------~~~~~~~~~~~~eps-------~~~l~~l~~~ik~~~v~~if~e~~~~-----------~~ 236 (284)
T 2prs_A 188 EKQFGL-------------TPLGHFTVNPEIQPG-------AQRLHEIRTQLVEQKATCVFAEPQFR-----------PA 236 (284)
T ss_dssp HHHHTC-------------CCCEEEESSTTSCCC-------HHHHHHHHHHHHHTTCCEEEECTTSC-----------SH
T ss_pred HHHCCC-------------eEeEeeccCCCCCCC-------HHHHHHHHHHHHHcCCCEEEEeCCCC-----------hH
Q ss_pred HHHHHHHHhCCEEEE
Q 013235 279 AVYKSIKKAGGLCIA 293 (447)
Q Consensus 279 ~l~~l~~~~g~llI~ 293 (447)
-+..++++.|+.++.
T Consensus 237 ~~~~ia~~~g~~v~~ 251 (284)
T 2prs_A 237 VVESVARGTSVRMGT 251 (284)
T ss_dssp HHHHHTTTSCCEEEE
T ss_pred HHHHHHHHcCCeEEE
No 272
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=24.20 E-value=61 Score=29.13 Aligned_cols=35 Identities=9% Similarity=-0.096 Sum_probs=27.4
Q ss_pred CeEEEEEccccCC----------CceeeCCCChHHHHHHHHHHhCCEEE
Q 013235 254 HVAGFLSESIQGV----------GGIIELAPGYLPAVYKSIKKAGGLCI 292 (447)
Q Consensus 254 ~~aavi~Epi~~~----------gG~~~~~~~~l~~l~~l~~~~g~llI 292 (447)
.+++||+|=+.-. .|...- +.++.+++++||+.+|
T Consensus 167 ~PagVicEi~~~~~~~~~~~~~~dG~mar----~~~l~~fA~~h~L~ii 211 (233)
T 1k4i_A 167 RPVAVISEIVDDGQEVEGRAVRAAPGMLR----GDECVAFARRWGLKVC 211 (233)
T ss_dssp CSBEEEEEBEECCEECTTSSCEESCEECC----HHHHHHHHHHTTCEEE
T ss_pred CceEEEEEeCCCcccccccccCCCCCcCC----HHHHHHHHHHcCCcEE
Confidence 6799999966431 455554 8999999999999888
No 273
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=24.15 E-value=1.3e+02 Score=25.72 Aligned_cols=18 Identities=17% Similarity=0.010 Sum_probs=14.5
Q ss_pred ChHHHHHHHHHHhCCEEE
Q 013235 275 GYLPAVYKSIKKAGGLCI 292 (447)
Q Consensus 275 ~~l~~l~~l~~~~g~llI 292 (447)
.|-+.++++|+++|+.+|
T Consensus 150 ~~n~~~~~~a~~~~v~~v 167 (240)
T 3mil_A 150 IYSDALAKLANEEKVPFV 167 (240)
T ss_dssp HHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHhCCeEE
Confidence 456778899999998877
No 274
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=23.90 E-value=1.1e+02 Score=29.92 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=37.8
Q ss_pred HHHHHHHHHh-CCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCch
Q 013235 144 ADFAEALASK-MPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199 (447)
Q Consensus 144 ~elae~L~~~-~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~ 199 (447)
.+|.+.+.+. .+.+...|++|.+|.-|..++..+... |-+++..++|++..+..
T Consensus 189 ~~l~~~~~~~gi~~~~~ivvyC~~G~~a~~~~~~L~~~--G~~~v~~l~Gg~~~W~~ 243 (423)
T 2wlr_A 189 EQLKAMLAKHGIRHDTTVILYGRDVYAAARVAQIMLYA--GVKDVRLLDGGWQTWSD 243 (423)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSHHHHHHHHHHHHHH--TCSCEEEETTTHHHHHH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCchHHHHHHHHHHHc--CCCCeEEECCCHHHHhh
Confidence 4566666543 233455788899998888777766544 66788899999877643
No 275
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=23.53 E-value=43 Score=26.42 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=32.9
Q ss_pred HHHHHHHHhCCCCCceEEEcCCHHH--HHHHHHHHHHhhcCCCeEEEEcCCcccCch
Q 013235 145 DFAEALASKMPGNLKVVFFTNSGTE--ANELAIMMARLYTGCNDIISLRNAYHGNAA 199 (447)
Q Consensus 145 elae~L~~~~~~~~~~v~~~~sGse--A~e~Aik~ar~~t~~~~ii~~~~~yHG~~~ 199 (447)
++.+.+.+ ++.+...|++|.+|.. |..++..+... |- ++..++|++.+|..
T Consensus 60 ~l~~~~~~-l~~~~~ivvyC~~g~r~~s~~a~~~L~~~--G~-~v~~l~GG~~~W~~ 112 (124)
T 3flh_A 60 DLATRIGE-LDPAKTYVVYDWTGGTTLGKTALLVLLSA--GF-EAYELAGALEGWKG 112 (124)
T ss_dssp HHHHHGGG-SCTTSEEEEECSSSSCSHHHHHHHHHHHH--TC-EEEEETTHHHHHHH
T ss_pred HHHHHHhc-CCCCCeEEEEeCCCCchHHHHHHHHHHHc--CC-eEEEeCCcHHHHHH
Confidence 34444443 3445567888999976 66666655444 44 48889998876654
No 276
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=23.51 E-value=1.5e+02 Score=28.34 Aligned_cols=57 Identities=14% Similarity=0.126 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHccCCCCeEEEEEccccCCC-----cee-eCCCChHHHHHHHHHHhCCEEE
Q 013235 236 GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVG-----GII-ELAPGYLPAVYKSIKKAGGLCI 292 (447)
Q Consensus 236 ~~~~~~~le~~i~~~~~~~~aavi~Epi~~~g-----G~~-~~~~~~l~~l~~l~~~~g~llI 292 (447)
.+.+.+.++++++.........|++.|..... |.+ ..-..|-+.++++|+++++.+|
T Consensus 251 ~~~~~~~l~~ii~~lr~~~a~vilvtP~~~~~~~~~~~~~~~~~~~~~~~i~~lA~~~~v~~i 313 (375)
T 2o14_A 251 EAEFKEVMRDMIRQVKAKGADVILSTPQGRATDFTSEGIHSSVNRWYRASILALAEEEKTYLI 313 (375)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEECCCCCTTCBCTTSCBCCTTSTTHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCCcccccCcccchhHHHHHHHHHHHHHHHHcCCeEE
Confidence 44556667766664322234567777764321 111 1234566788999999998776
No 277
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=22.93 E-value=42 Score=28.17 Aligned_cols=56 Identities=7% Similarity=0.003 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHccCCCCeEEEEEccc-cCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235 236 GEMYAKDVQDLIDFGTSGHVAGFLSESI-QGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (447)
Q Consensus 236 ~~~~~~~le~~i~~~~~~~~aavi~Epi-~~~gG~~~~~~~~l~~l~~l~~~~g~llI 292 (447)
.+.+.+.++++++.........+++.+. ....|. ..-..+-+.++++|+++|+.+|
T Consensus 81 ~~~~~~~l~~li~~~~~~~~~vil~~~~~p~~~~~-~~~~~~n~~~~~~a~~~~v~~i 137 (190)
T 1ivn_A 81 PQQTEQTLRQILQDVKAANAEPLLMQIRLPANYGR-RYNEAFSAIYPKLAKEFDVPLL 137 (190)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECCCCCGGGCH-HHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeccCCcchhH-HHHHHHHHHHHHHHHHcCCeEE
Confidence 3444555666555422213345666542 111111 1113455678899999987766
No 278
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}
Probab=22.71 E-value=49 Score=30.27 Aligned_cols=21 Identities=14% Similarity=0.040 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCCEEEEeccc
Q 013235 277 LPAVYKSIKKAGGLCIADEVQ 297 (447)
Q Consensus 277 l~~l~~l~~~~g~llI~DEv~ 297 (447)
++.+.++|+++|+.||+|-..
T Consensus 92 ~d~~~~~a~~~Gi~vil~~~~ 112 (351)
T 3vup_A 92 MKDLLDTAKKYNILVFPCLWN 112 (351)
T ss_dssp HHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEecc
Confidence 578899999999999998643
No 279
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=22.48 E-value=44 Score=31.40 Aligned_cols=52 Identities=10% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCCceEEEcCCHHHHHHHHHHHHH-hhcCCCeEEEEcCCcccCc
Q 013235 144 ADFAEALASKMPGNLKVVFFTNSGTEANELAIMMAR-LYTGCNDIISLRNAYHGNA 198 (447)
Q Consensus 144 ~elae~L~~~~~~~~~~v~~~~sGseA~e~Aik~ar-~~t~~~~ii~~~~~yHG~~ 198 (447)
.+|.+.+ ..++.+...|++|.||.-|..++..+.. . |-+++..++|++.+|.
T Consensus 247 ~~l~~~~-~~l~~~~~ivvyC~sG~rs~~a~~~L~~~~--G~~~v~~~~GG~~~W~ 299 (318)
T 3hzu_A 247 EELERLY-DFINPDDQTVVYCRIGERSSHTWFVLTHLL--GKADVRNYDGSWTEWG 299 (318)
T ss_dssp HHHHHHT-TTCCTTCCCEEECSSSHHHHHHHHHHHHTS--CCSSCEECTTHHHHHT
T ss_pred HHHHHHh-cCCCCCCcEEEEcCChHHHHHHHHHHHHHc--CCCCeeEeCCcHHHHh
No 280
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=22.40 E-value=1.4e+02 Score=29.74 Aligned_cols=54 Identities=7% Similarity=-0.045 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHccCCCCeEEEEEccccCCCceeeCCC------ChHHHHHHHHHHhCCEEEE
Q 013235 237 EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAP------GYLPAVYKSIKKAGGLCIA 293 (447)
Q Consensus 237 ~~~~~~le~~i~~~~~~~~aavi~Epi~~~gG~~~~~~------~~l~~l~~l~~~~g~llI~ 293 (447)
+...+.+++++.+. .+..||+|+++.......... .+++.|.++++++|+.+|+
T Consensus 340 ~~i~~~i~~~~~~~---~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~ 399 (503)
T 1q57_A 340 DRLLAKLAYMRSGL---GCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVV 399 (503)
T ss_dssp HHHHHHHHHHHHTT---CCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHhc---CCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEE
Confidence 34444555555433 567999999887532110011 3677889999999998775
No 281
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=22.14 E-value=1.5e+02 Score=28.32 Aligned_cols=99 Identities=12% Similarity=0.161 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhC-CC---CCceEE----EcCCHHHHHHHHHHHHHhhcC-----
Q 013235 117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKM-PG---NLKVVF----FTNSGTEANELAIMMARLYTG----- 183 (447)
Q Consensus 117 ~p~v~~A~~~~l~~~~~~~~~~~~~~~~elae~L~~~~-~~---~~~~v~----~~~sGseA~e~Aik~ar~~t~----- 183 (447)
+|++.+-+.+.+..+ .....++.++|...+ |. +...++ -..+|.||..-|=.+.|.|+.
T Consensus 67 D~e~~~~a~~e~~~l--------~~~~~~le~~l~~lLlp~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~ 138 (354)
T 3d5a_X 67 DPELKEMAKAEREAL--------LARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFAEEM 138 (354)
T ss_dssp CHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHSTTCCCCCCCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcCCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHc
Confidence 566666555555543 234455555555443 32 223333 377899999999888888753
Q ss_pred --CCeEEEEcCCccc-CchhhhhccCCCCccccccCCCeEeec
Q 013235 184 --CNDIISLRNAYHG-NAAGTMGATAQSNWKFNVVQTGVHHAL 223 (447)
Q Consensus 184 --~~~ii~~~~~yHG-~~~~~~~~t~~~~~~~~~~~~g~~~~~ 223 (447)
+-.|+....+-+| ....++.+.+...|.+--...|+|.+-
T Consensus 139 g~k~ev~~~~~~~~gG~k~v~~~i~G~~ayg~Lk~E~GvHRvq 181 (354)
T 3d5a_X 139 GFETEVLDSHPTDLGGFSKVVFEVRGPGAYGTFKYESGVHRVQ 181 (354)
T ss_dssp TCEEEEEEEEECTTSSEEEEEEEEESTTHHHHHGGGCSEEEEE
T ss_pred CCeEEEEeCCCCCCCccEEEEEEEECccHHHHHHhccCeeEEE
Confidence 3456665544443 333444555544333222235777653
No 282
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=22.05 E-value=53 Score=25.16 Aligned_cols=43 Identities=12% Similarity=0.172 Sum_probs=29.4
Q ss_pred CCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCch
Q 013235 154 MPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199 (447)
Q Consensus 154 ~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~ 199 (447)
++.+...+++|.+|.-+..+|-.+... | -+.+.+.|++.+|..
T Consensus 53 l~~~~~ivv~C~~G~rS~~aa~~L~~~--G-~~~~~l~GG~~~W~~ 95 (103)
T 3iwh_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEAN--G-IDAVNVEGGMHAWGD 95 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTT--T-CEEEEETTHHHHHCS
T ss_pred hcCCCeEEEECCCCHHHHHHHHHHHHc--C-CCEEEecChHHHHHH
Confidence 355566788899998877776654443 3 356678888876654
No 283
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=21.52 E-value=52 Score=24.48 Aligned_cols=22 Identities=14% Similarity=-0.153 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHhCCEEEEeccc
Q 013235 276 YLPAVYKSIKKAGGLCIADEVQ 297 (447)
Q Consensus 276 ~l~~l~~l~~~~g~llI~DEv~ 297 (447)
.-.+|++++++||++++-|.--
T Consensus 28 ~A~~I~~~A~e~~VPi~e~~~L 49 (83)
T 3bzy_B 28 KALQIIKLAELYDIPVIEDIPL 49 (83)
T ss_dssp HHHHHHHHHHHTTCCEEECHHH
T ss_pred HHHHHHHHHHHcCCCEEeCHHH
Confidence 3578999999999999999853
No 284
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=21.48 E-value=42 Score=31.29 Aligned_cols=54 Identities=15% Similarity=0.075 Sum_probs=36.6
Q ss_pred HHHHHHHHHh-CCCCCceEEEcCCHHHHHHHHHHHHHhhcCCCeEEEEcCCcccCch
Q 013235 144 ADFAEALASK-MPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAA 199 (447)
Q Consensus 144 ~elae~L~~~-~~~~~~~v~~~~sGseA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~ 199 (447)
.++.+.+.+. ++.+...|++|.||.-|..++..+... |-.++..++|++.+|..
T Consensus 240 ~~l~~~~~~~~~~~~~~iv~yC~sG~rs~~a~~~L~~~--G~~~v~~~~Gg~~~W~~ 294 (302)
T 3olh_A 240 EEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLC--GKPDVPIYDGSWVEWYM 294 (302)
T ss_dssp HHHHHHHHHTTCCTTSCEEEECSSSSTTHHHHHHHHTT--TCCCCCEESSHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCEEEECCChHHHHHHHHHHHHc--CCCCeeEeCCcHHHHhh
Confidence 4566666653 444556788899998887766654332 66678888998876654
No 285
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=21.17 E-value=73 Score=26.33 Aligned_cols=55 Identities=9% Similarity=0.059 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHccCCCCeEEEEEcc-ccCCCceeeCCCChHHHHHHHHHHhCCEEE
Q 013235 237 EMYAKDVQDLIDFGTSGHVAGFLSES-IQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292 (447)
Q Consensus 237 ~~~~~~le~~i~~~~~~~~aavi~Ep-i~~~gG~~~~~~~~l~~l~~l~~~~g~llI 292 (447)
+.+.+.++++++.........+++.. .+..-|.. ....|-+.++++|+++|+.+|
T Consensus 86 ~~~~~~~~~~i~~~~~~~~~vvl~~~~~p~~~~~~-~~~~~~~~~~~~a~~~~~~~v 141 (185)
T 3hp4_A 86 KKMQTNLTALVKKSQAANAMTALMEIYIPPNYGPR-YSKMFTSSFTQISEDTNAHLM 141 (185)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCCCCSTTCHH-HHHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEeCCCCCcccHH-HHHHHHHHHHHHHHHcCCEEE
Confidence 34455555555432222334455542 22211111 123567788999999998876
No 286
>3r45_C Holliday junction recognition protein; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=20.85 E-value=84 Score=22.66 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=25.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 013235 372 QKDKLQNNAHVVGSYLKERLTALKDKYGII 401 (447)
Q Consensus 372 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i 401 (447)
.++.+..++++...+|..++..+.++|+.+
T Consensus 15 ~d~~Ll~kLr~sr~RFQ~~Mq~lieKYn~P 44 (81)
T 3r45_C 15 EDDQLLQKLRASRRRFQRRMQRLIEKYNQP 44 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 456789999999999999999999998654
No 287
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=20.58 E-value=1.2e+02 Score=25.40 Aligned_cols=57 Identities=7% Similarity=0.011 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHccCCCCeEEEEEccccCCC-ceee------CCCChHHHHHHHHHHhCCEEE
Q 013235 236 GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVG-GIIE------LAPGYLPAVYKSIKKAGGLCI 292 (447)
Q Consensus 236 ~~~~~~~le~~i~~~~~~~~aavi~Epi~~~g-G~~~------~~~~~l~~l~~l~~~~g~llI 292 (447)
.+.+.+.++++++.........+++.+.+... +... .-..|-+.++++|+++|+.+|
T Consensus 96 ~~~~~~~~~~~i~~~~~~~~~vil~~~~p~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~i 159 (204)
T 3p94_A 96 LENVFGNLVSMAELAKANHIKVIFCSVLPAYDFPWRPGMQPADKVIQLNKWIKEYADKNGLTYV 159 (204)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECCCCCSCBTTBTTCCCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 34455566666553221234456665433211 1110 012355668999999998776
No 288
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=20.58 E-value=1e+02 Score=25.57 Aligned_cols=55 Identities=9% Similarity=-0.039 Sum_probs=30.4
Q ss_pred HHHHHHHHHccCCCCeEEEEEc-cccCCCceeeCCCChHHHHH-HHHHHhCCE-EEEecccc
Q 013235 240 AKDVQDLIDFGTSGHVAGFLSE-SIQGVGGIIELAPGYLPAVY-KSIKKAGGL-CIADEVQA 298 (447)
Q Consensus 240 ~~~le~~i~~~~~~~~aavi~E-pi~~~gG~~~~~~~~l~~l~-~l~~~~g~l-lI~DEv~t 298 (447)
.+.|.+++++. ++..++++ |. ++.|.........+... .+.++.++. ..+||-+|
T Consensus 44 ~~~l~~li~~~---~~~~ivVGlP~-~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~T 101 (150)
T 1vhx_A 44 LSRLSELIKDY---TIDKIVLGFPK-NMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLT 101 (150)
T ss_dssp HHHHHHHHTTS---EEEEEEEECCC-CBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSC
T ss_pred HHHHHHHHHHc---CCCEEEEeeee-cCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCC
Confidence 67788888754 56667666 64 33343322111112222 444556775 55799876
No 289
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=20.55 E-value=56 Score=29.56 Aligned_cols=19 Identities=11% Similarity=0.233 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhCCEEEEec
Q 013235 277 LPAVYKSIKKAGGLCIADE 295 (447)
Q Consensus 277 l~~l~~l~~~~g~llI~DE 295 (447)
.++++++|+++|+.||+++
T Consensus 85 a~~l~~l~~~~~~~liInd 103 (243)
T 3o63_A 85 CEILADAAHRYGALFAVND 103 (243)
T ss_dssp HHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHhhCCEEEEeC
Confidence 4789999999999999854
No 290
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=20.11 E-value=1.1e+02 Score=27.55 Aligned_cols=57 Identities=11% Similarity=0.096 Sum_probs=35.4
Q ss_pred HHHHHHHHHHh-CCCCCceEEEcCCHH-HHHHHHHHHHHhhcCCCeEEEEcCCcccCchhh
Q 013235 143 IADFAEALASK-MPGNLKVVFFTNSGT-EANELAIMMARLYTGCNDIISLRNAYHGNAAGT 201 (447)
Q Consensus 143 ~~elae~L~~~-~~~~~~~v~~~~sGs-eA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~ 201 (447)
...+.+.+.+. .+.+...|++|.+|. .+-.++-.+... |-++|..++|++.++....
T Consensus 66 ~~~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~--G~~~v~~L~GG~~~w~~~g 124 (271)
T 1e0c_A 66 REQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVI--GQQRYHYLNGGLTAWLAED 124 (271)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEECSSSSHHHHHHHHHHHHT--TCCCEEEETTHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCCCccHHHHHHHHHHc--CCCCeEEecCCHHHHHHcC
Confidence 34566666665 444456677788886 555444443332 6667889999987765443
No 291
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=20.10 E-value=84 Score=28.60 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=34.7
Q ss_pred HHHHHHHHHh-CCCCCceEEEcCCHH-HHHHHHHHHHHhhcCCCeEEEEcCCcccCchhhh
Q 013235 144 ADFAEALASK-MPGNLKVVFFTNSGT-EANELAIMMARLYTGCNDIISLRNAYHGNAAGTM 202 (447)
Q Consensus 144 ~elae~L~~~-~~~~~~~v~~~~sGs-eA~e~Aik~ar~~t~~~~ii~~~~~yHG~~~~~~ 202 (447)
.++.+.+.+. .+.+...|++|.+|. .+-.++..+.. -|-++|..++|++.++.....
T Consensus 65 ~~~~~~~~~~gi~~~~~ivvyc~~g~~~s~~a~~~L~~--~G~~~v~~l~GG~~~W~~~g~ 123 (285)
T 1uar_A 65 EEFAKLMERLGISNDTTVVLYGDKNNWWAAYAFWFFKY--NGHKDVRLMNGGRQKWVEEGR 123 (285)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECHHHHHHHHHHHHHHHH--TTCSCEEEETTHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHH--cCCCCeEEecCCHHHHHHCCC
Confidence 3566666554 344455677777776 45444444332 266788899999987755433
Done!