RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 013235
(447 letters)
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 242 bits (617), Expect = 4e-76
Identities = 108/382 (28%), Positives = 178/382 (46%), Gaps = 6/382 (1%)
Query: 59 SADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHP 118
S E++ +R + + ++ P+ + ++D GR YLD GGIA + GH HP
Sbjct: 2 SNKELMQRRSQAIPRGVGQIH--PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHP 59
Query: 119 YVVDSIVNQIKRIQHSTVLYLNH-AIADFAEALASKMPGN-LKVVFFTNSGTEANELAIM 176
VV ++ Q+K++ H+ L + + E + K+PG+ K +G+EA E A+
Sbjct: 60 KVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVK 119
Query: 177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSN-WKFNVVQTGVHHALNPDPYRGVFGAD 235
+AR T + I+ AYHG T+ T + N + + H P ++
Sbjct: 120 IARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISE 179
Query: 236 GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE 295
+ A + + +A + E +QG GG +P ++ + + G + IADE
Sbjct: 180 DDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADE 239
Query: 296 VQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFG 355
VQ+G RT + E GV PD+ T AK I G PL V E+ + + T+
Sbjct: 240 VQSGAGRT-GTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYA 298
Query: 356 GNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEF 415
GNP+ A VLKV +++ L A+ +G LK+ L A+ +K+ IGDVRG G ++ +E
Sbjct: 299 GNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIEL 358
Query: 416 VTDRQLKTPAKAETLYIMDKMK 437
D P T I+ + +
Sbjct: 359 FEDGDHNKPDAKLTAEIVARAR 380
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 232 bits (593), Expect = 5e-73
Identities = 110/361 (30%), Positives = 174/361 (48%), Gaps = 27/361 (7%)
Query: 62 EILAKRKTFLSPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYV 120
+L KT S +Y+K L +V G+ ++D G Y+D GG GH +P V
Sbjct: 3 ALLEAEKTLDS----GVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEV 58
Query: 121 VDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARL 180
V+++ Q + + +F L + +P L VF NSGTEANE A+ AR
Sbjct: 59 VEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARA 118
Query: 181 YTGCNDIISLRNAYHGNAAGTMGATAQSNWK--FNVVQTGVHHALNPDPYRGVFGADGEM 238
+TG ++ + G G++ T + ++ F + V PY V
Sbjct: 119 HTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFI----PYNDV------- 167
Query: 239 YAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQA 298
+ ++ +D A + E +QG GG+ P +L A + ++ G L I DE+Q
Sbjct: 168 --EALKRAVD----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT 221
Query: 299 GFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNP 358
G RTG F FE G+VPDI+T+AK +G G+PLG V E+A + + + TFGGNP
Sbjct: 222 GMGRTGKRFA-FEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNP 280
Query: 359 VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTD 418
+ AAG A ++ +++ +L A +G + E+L A+ I +VRG G ++G+E
Sbjct: 281 LAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPK--IREVRGMGLMVGLELKEK 338
Query: 419 R 419
Sbjct: 339 A 339
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 404
Score = 227 bits (579), Expect = 9e-71
Identities = 97/371 (26%), Positives = 164/371 (44%), Gaps = 23/371 (6%)
Query: 58 PSADEILAKRKTFLSPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHC 116
P++D+I + + + H P+ + GK YL+D GR+Y D I+ V GHC
Sbjct: 3 PTSDDIFEREYKYGA----HNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHC 58
Query: 117 HPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM 176
HP +V+++ +Q+ ++ ++ + N+ + ++ E N V N+G EA E A
Sbjct: 59 HPKIVNALKSQVDKLTLTSRAFYNNVLGEYEE--YITKLFNYHKVLPMNTGVEAGETACK 116
Query: 177 MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADG 236
+AR + I A + + + + + +P Y G
Sbjct: 117 LARKWGYTVKGIQKYKAKI---------VFAAGNFWGRTLSAISSSTDPTSYDGFGPFMP 167
Query: 237 EMYA---KDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
D+ L +VA F+ E IQG G++ PGYL V + + L IA
Sbjct: 168 GFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIA 227
Query: 294 DEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFN 352
DE+Q G ART + + V PDIV + K + G P+ AV+ +I + +F+
Sbjct: 228 DEIQTGLART-GRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFS 286
Query: 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG 412
T+GGNP+ A L+V++++ L NA +G L+ L L ++ VRG+G L
Sbjct: 287 TYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD--VVTAVRGKGLLNA 344
Query: 413 VEFVTDRQLKT 423
+ +
Sbjct: 345 IVIKETKDWDA 355
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 215 bits (547), Expect = 5e-66
Identities = 79/363 (21%), Positives = 151/363 (41%), Gaps = 15/363 (4%)
Query: 59 SADEILAKRKTFLSPSLFHLYSK-PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCH 117
+ ++ + + + H Y P+ + K +++D N +RY D ++V GHCH
Sbjct: 2 TPEDYINNELKYGA----HNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCH 57
Query: 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177
P ++++++NQ K + + + + + L + + + ++ T + +
Sbjct: 58 PNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCR 117
Query: 178 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGE 237
++ + + ++ + T + + +
Sbjct: 118 KW----GYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTS----NFGPFAPQFSK 169
Query: 238 MYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQ 297
+ D++ L + +V F+ E IQG G+I + YL VY KK L +ADEVQ
Sbjct: 170 VPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQ 229
Query: 298 AGFARTGSHFWGFEAHGVVPDIVTMAKGIGNG-IPLGAVVTTPEIAEVLTRRNYFNTFGG 356
G RT + V PD++ + K + G P+ AV+ +I V+ + +T+GG
Sbjct: 230 TGLGRT-GKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGG 288
Query: 357 NPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFV 416
NP+ + L V+ +KL NA +G E L I+ DVRG+G L +EF
Sbjct: 289 NPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFK 348
Query: 417 TDR 419
+
Sbjct: 349 NEL 351
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 205 bits (523), Expect = 3e-62
Identities = 90/397 (22%), Positives = 152/397 (38%), Gaps = 29/397 (7%)
Query: 61 DEILAKRKTFL-------SPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCC 113
DEI A + + + + +P+ K Y +D +G RY+D G C
Sbjct: 7 DEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAIC 66
Query: 114 GHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANEL 173
GH HP V++++ +++ A+ + + + ++++V F NSGTEA
Sbjct: 67 GHAHPEVIEALKVAMEKGTS---FGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMA 123
Query: 174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT-GVHHALNPDPYRGVF 232
+ + R YTG + II YHG+A + + + GV +
Sbjct: 124 VLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLT--- 180
Query: 233 GADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCI 292
+ V+ L G +AG + E I G G I G+L + + + L +
Sbjct: 181 --TPYNDLEAVKALFAEN-PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLV 237
Query: 293 ADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLT---RRN 349
DEV GF + E GV PD+ T+ K IG G+P+GA EI +++
Sbjct: 238 FDEVMTGFRIA--YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMY 295
Query: 350 YFNTFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGF 409
T GNP+ AG L+++++ + L + L A+ + G
Sbjct: 296 QAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSG 355
Query: 410 LLGVEFVTD-----RQLKTPAKAETLYIMDKM--KGI 439
+ G F K + M +GI
Sbjct: 356 MFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGI 392
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
{Pseudomonas cepacia [TaxId: 292]}
Length = 431
Score = 190 bits (483), Expect = 2e-56
Identities = 127/362 (35%), Positives = 179/362 (49%), Gaps = 8/362 (2%)
Query: 82 PLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH 141
P+ + K +++D +GR LD G + GHCHP +V I ++ H L+
Sbjct: 24 PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSR 83
Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGT 201
+ D A LA+ P L ++G E+NE AI MA+L TG +I+ ++HG
Sbjct: 84 PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAA 143
Query: 202 MGATAQSN-WKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL----IDFGTSGHVA 256
AT + G P YR F +G D ID +SG++A
Sbjct: 144 ASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLA 203
Query: 257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVV 316
F++E I GGIIEL GY+ A+ + + G L I DE Q G RTG+ F GV
Sbjct: 204 AFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQR-DGVT 262
Query: 317 PDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYF--NTFGGNPVCTAAGHAVLKVIQKD 374
PDI+T++K +G G+PL A+VT+ I E Y T +P+ A G VL V+Q+D
Sbjct: 263 PDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRD 322
Query: 375 KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVTDRQLKTPAKAETLYIMD 434
L A+V+G L+ L L +++ IGDVRGRG LLGVE V DR+ K PA I
Sbjct: 323 GLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITR 382
Query: 435 KM 436
+
Sbjct: 383 EC 384
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, BioA {Escherichia coli [TaxId: 562]}
Length = 429
Score = 156 bits (395), Expect = 1e-43
Identities = 90/371 (24%), Positives = 148/371 (39%), Gaps = 19/371 (5%)
Query: 75 LFHLYS------KPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHPYVVDSIVNQI 128
+ H ++ VV + L +GRR +D G+ HP + ++ +QI
Sbjct: 13 ILHPFTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQI 72
Query: 129 KRIQHSTVLYLNHAIA-DFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYT----- 182
+ H + HA A + L + P L+ VF +SG+ A E+A+ MA Y
Sbjct: 73 DAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGE 132
Query: 183 GCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKD 242
++ RN YHG+ G M N ++ + + L + + +
Sbjct: 133 ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMV 192
Query: 243 VQDLIDFGTSGHVAGFLSESIQ-GVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFA 301
+ +A + E I G GG+ P +L + K + G L IADE+ GF
Sbjct: 193 GFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFG 252
Query: 302 RTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR-----NYFNTFGG 356
RTG F A + G + L A +TT E+AE ++ + TF G
Sbjct: 253 RTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMG 312
Query: 357 NPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFV 416
NP+ AA +A L +++ Q + L+E+L +D ++ DVR G + VE
Sbjct: 313 NPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARD-AEMVADVRVLGAIGVVETT 371
Query: 417 TDRQLKTPAKA 427
+ K
Sbjct: 372 HPVNMAALQKF 382
>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
Length = 461
Score = 155 bits (393), Expect = 3e-43
Identities = 75/417 (17%), Positives = 130/417 (31%), Gaps = 54/417 (12%)
Query: 48 FDYSPP----PYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLD 103
FDY P GP + E++ + + H N + + YL D +G R LD
Sbjct: 1 FDYDGPLMKTEVPGPRSRELMKQLNIIQNAEAVHF---FCNYEESRGNYLVDVDGNRMLD 57
Query: 104 AFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNH-----AIADFAEALASKMPGNL 158
+ I+++ G+ HP +V + L + E+L S P +
Sbjct: 58 LYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGM 117
Query: 159 KVVFFTNSGTEANELAIMMARLY--------------------------TGCNDIISLRN 192
+ G+ +NE A ++ I+S
Sbjct: 118 SQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMG 177
Query: 193 AYHGNAAGTMGATAQS-------NWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQD 245
A+HG G + T + + + + ++V+D
Sbjct: 178 AFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVED 237
Query: 246 LIDFGTSGH--VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEV-QAGFAR 302
LI VAG + E IQ GG + + + +K G + DEV G +
Sbjct: 238 LIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGST 297
Query: 303 TGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTA 362
D++T +K + G P + + +
Sbjct: 298 GKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEV 357
Query: 363 AGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY-GIIGDVRGRGFLLGVEFVTD 418
I+++ L +NA G L L L+ +Y I VRGRG + +
Sbjct: 358 INI-----IKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDE 409
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 81.1 bits (199), Expect = 4e-17
Identities = 40/364 (10%), Positives = 92/364 (25%), Gaps = 50/364 (13%)
Query: 92 YLFDENGRRYLDAFGGIATVCCGHCHPYV---VDSIVNQIKRIQHSTVLYLNHAIAD--- 145
R G+ ++ DS + + + ++ + A +
Sbjct: 16 KRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSGSRS 75
Query: 146 ---FAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY------TGCNDIISLRNAYHG 196
AE++ + + T+ G A ++ I + + +++ N +
Sbjct: 76 YYALAESVKNIF--GYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFD 133
Query: 197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA 256
T G + + V+ D + G + ++ I+ +V
Sbjct: 134 T---TQGHSQINGCTVRN----VYIKEAFDTG-VRYDFKGNFDLEGLERGIEEVGPNNVP 185
Query: 257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFAR--TGSHFWGFEAHG 314
++ G ++ L A+Y KK + D + ++
Sbjct: 186 YIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWT 245
Query: 315 V---------VPDIVTMAKGIGNGIPLGAVVTT---PEIAEVLTRRNYFNTFGGNP---- 358
+ D++ M+ +P+G ++ R G P
Sbjct: 246 IEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGG 305
Query: 359 ---VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKY----GIIGDVRGRGFLL 411
L YL + L + G V L
Sbjct: 306 LEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLP 365
Query: 412 GVEF 415
+
Sbjct: 366 HIPA 369
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 77.7 bits (190), Expect = 5e-16
Identities = 39/302 (12%), Positives = 82/302 (27%), Gaps = 33/302 (10%)
Query: 140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLY---TGCNDIISLRNAYHG 196
+ D + + + G A + + Y G + +H
Sbjct: 74 SRNYYDLKDKAKELFN--YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHF 131
Query: 197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA 256
+ V + D G+ K +++ I + ++
Sbjct: 132 DTTAAHVELNGCKAINIVTEKAFDSETYDDW-------KGDFDIKKLKENIAQHGADNIV 184
Query: 257 GFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSH-----FWGFE 311
+S G ++ L VY+ K+ G + D + +
Sbjct: 185 AIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNAT 244
Query: 312 AHGVVPDIV------TMAKGIGNGIPLGAVVTTPEIAE-------VLTRRNYFNTFGGNP 358
V+ D+ TM+ + +G +V + E F T+GG
Sbjct: 245 IKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLA 304
Query: 359 -VCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVEFVT 417
AA L+ +++ + YL +RL I G + + +
Sbjct: 305 GRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIP--IQYPTGGHAVFVDCKKLV 362
Query: 418 DR 419
+
Sbjct: 363 PQ 364
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 60.2 bits (144), Expect = 1e-10
Identities = 29/303 (9%), Positives = 64/303 (21%), Gaps = 20/303 (6%)
Query: 114 GHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANEL 173
P V ++V + + A ++ VF +GT AN L
Sbjct: 13 AGASPEVAQALVKHSSG--QAGPYGTDELTAQVKRKFC-EIFERDVEVFLVPTGTAANAL 69
Query: 174 AIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFG 233
+ G + + G P +
Sbjct: 70 CLSAMTPPWGNIYCHPASHINNDEC-----------GAPEFFSNGAKLMTVDGPAAKLDI 118
Query: 234 ADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIA 293
++ + V+ + + + + + A+ K +
Sbjct: 119 VRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLD-----EIEAIGDVCKSSSLGLHM 173
Query: 294 DEVQAGFARTGSHFWGFEAHGVV-PDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFN 352
D + A E D ++ + A+V
Sbjct: 174 DGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKR 233
Query: 353 TFGGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLG 412
+ + + D NA + + L+ G+ +L
Sbjct: 234 AGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILF 293
Query: 413 VEF 415
Sbjct: 294 CRL 296
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Thermotoga maritima [TaxId: 2336]}
Length = 343
Score = 43.6 bits (101), Expect = 3e-05
Identities = 32/280 (11%), Positives = 64/280 (22%), Gaps = 20/280 (7%)
Query: 135 TVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
V + I + A + F SGT N+++IM + + + +
Sbjct: 28 DVYGEDPTINELERLAAETF--GKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIF 85
Query: 195 HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGH 254
+ DP
Sbjct: 86 WYEVGAMA------VLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFP-----------R 128
Query: 255 VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG 314
+ E+ G + + + K+ G D + A S E G
Sbjct: 129 TSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAG 188
Query: 315 VVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVCTAAGHAVLKVIQKD 374
++ VV + E + G A ++ + +
Sbjct: 189 YADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMV 248
Query: 375 KLQNNAHVVGSYLKERLTALKDKYGIIGDVRGRGFLLGVE 414
H +L +L + DV+ +L +
Sbjct: 249 DRLKEDHENARFLALKLKEIGYSV-NPEDVKTNMVILRTD 287
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 43.0 bits (99), Expect = 5e-05
Identities = 31/283 (10%), Positives = 63/283 (22%), Gaps = 22/283 (7%)
Query: 116 CHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAI 175
HP ++D + + A A + + V F + GT+ N +A
Sbjct: 12 MHPKILDLMARDNM--TQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIAC 69
Query: 176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGAD 235
+ A + +TG A
Sbjct: 70 SL-------------------ALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDG 110
Query: 236 GEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADE 295
A L + + V L + L + S K+ G D
Sbjct: 111 KLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDG 170
Query: 296 V-QAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRNYFNTF 354
A + + + D+ + G+ A++ + + R
Sbjct: 171 ARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQRG 230
Query: 355 GGNPVCTAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDK 397
G +++ + L+
Sbjct: 231 ALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEAC 273
>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 382
Score = 37.4 bits (85), Expect = 0.003
Identities = 6/54 (11%), Positives = 14/54 (25%)
Query: 142 AIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYH 195
+ + S + SGT ++ L N + + +
Sbjct: 41 VLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGT 94
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 35.1 bits (80), Expect = 0.017
Identities = 25/213 (11%), Positives = 51/213 (23%), Gaps = 23/213 (10%)
Query: 159 KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG 218
K + T+ G A L L ++ + A V
Sbjct: 91 KHIVPTHQGRGAENLLSQ---LAIKPGQYVAGNMYFTTTRFHQEKNGA------TFVDIV 141
Query: 219 VHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLP 278
A + G++ + LI + ++A + G ++ +
Sbjct: 142 RDEAHDA---SLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMR 198
Query: 279 AVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVP-----------DIVTMAKGIG 327
AV++ G D + V D TM+
Sbjct: 199 AVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKD 258
Query: 328 NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC 360
+ +G + + + + G P
Sbjct: 259 CLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSY 291
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 34.1 bits (77), Expect = 0.030
Identities = 31/198 (15%), Positives = 45/198 (22%), Gaps = 13/198 (6%)
Query: 163 FTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHA 222
T +EA L M + + + N Q W V
Sbjct: 120 NTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCG---PVQICWHKFARYWDVELR 176
Query: 223 LNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYK 282
P + M K + + D T G V F L ++
Sbjct: 177 EIP-----MRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLH--DALDKFQ 229
Query: 283 SIKKAGGLCIADEVQAGFA---RTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTP 339
+ D GF W F V + K + G V+
Sbjct: 230 ADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRD 289
Query: 340 EIAEVLTRRNYFNTFGGN 357
E A + GG
Sbjct: 290 EEALPQELVFNVDYLGGQ 307
>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium
[TaxId: 90371]}
Length = 376
Score = 33.8 bits (76), Expect = 0.038
Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
Query: 118 PYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMM 177
P + + +K + S + + A + +S T +A+M
Sbjct: 8 PAMGAEELAAVKTVLDSGWITTGPKNQELEAAFCRLT--GNQYAVAVSSATAGMHIALMA 65
Query: 178 ARLYTG 183
+ G
Sbjct: 66 LGIGEG 71
>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA
synthase) {Amycolatopsis mediterranei [TaxId: 33910]}
Length = 384
Score = 33.2 bits (74), Expect = 0.054
Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 5/106 (4%)
Query: 118 PYVVDSIVNQIKRIQHSTVLYLNH--AIADFAEALASKMPGNLKVVFFTNSGTEANELAI 175
P D+ N + R + + F A+ +GT A ELA+
Sbjct: 9 PQYDDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHH--GAAHALAVTNGTHALELAL 66
Query: 176 MMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHH 221
+ + G +I + ++ A + T
Sbjct: 67 QVMGVGPGTE-VIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLD 111
>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase
{Salmonella typhimurium [TaxId: 90371]}
Length = 361
Score = 30.9 bits (68), Expect = 0.28
Identities = 8/57 (14%), Positives = 12/57 (21%), Gaps = 2/57 (3%)
Query: 139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYH 195
+ V SG+ A E + A I+S
Sbjct: 35 VEQIRQQLTALA--TASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGA 89
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 30.6 bits (68), Expect = 0.41
Identities = 31/230 (13%), Positives = 66/230 (28%), Gaps = 19/230 (8%)
Query: 51 SPPPYDGPSADEILAKRKTFLSPSLFHLYSKPLNVVDGKMQYLFDENGRRYLDAFGGIAT 110
+ P + + ++IL + + P + H +S F +A
Sbjct: 44 ATAPQEPDTFEDILQDVEKIIMPGVTHWHS-------PYFFAYFPTAS----SYPAMLAD 92
Query: 111 VCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKMPGNLKVVFFTNSGTEA 170
+ CG + + ++ + EA + G V S +EA
Sbjct: 93 MLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQG-SASEA 151
Query: 171 NELAIMMARLY----TGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVH-HALNP 225
+A++ AR + A A S+ + + GV A+
Sbjct: 152 TLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPS 211
Query: 226 DPYRGVFGADGEMYAKDVQD--LIDFGTSGHVAGFLSESIQGVGGIIELA 273
D + + + + + LI F + S + + +
Sbjct: 212 DGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPIC 261
>d1q88a_ e.47.1.1 (A:) 39 kda initiator binding protein, IBP39,
C-terminal domains {Trichomonas vaginalis [TaxId: 5722]}
Length = 192
Score = 29.2 bits (65), Expect = 0.69
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 77 HLYSKPLNVVDGKMQYLFDENGRRY 101
+++KPL ++ QYL DENG +Y
Sbjct: 147 KIWNKPL--IEATGQYLMDENGEKY 169
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 30.0 bits (66), Expect = 0.70
Identities = 27/285 (9%), Positives = 68/285 (23%), Gaps = 23/285 (8%)
Query: 137 LYLNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHG 196
L ++ A AE A+++ K F G+ + A + G ++ RN H
Sbjct: 61 LLIHEGPAVAAEKHAARVYNADKTYFVLG-GSSNANNTVTSALVSNGDL-VLFDRNN-HK 117
Query: 197 NAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVA 256
+ + A A + + + A V
Sbjct: 118 SVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRL 177
Query: 257 GFL-----SESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFE 311
+ +I +++ + G ++ +
Sbjct: 178 AVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPED 237
Query: 312 AHGVVPDIVTMAKGIG----------NGIPLGAVVTTPEIAEVLTRRNYFNTFGGNPVC- 360
+V + ++ K + + + N F +
Sbjct: 238 PGIIV--VQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMY 295
Query: 361 --TAAGHAVLKVIQKDKLQNNAHVVGSYLKERLTALKDKYGIIGD 403
A+ + KL ++ + +++L +
Sbjct: 296 AALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVP 340
>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c)
{Campylobacter jejuni [TaxId: 197]}
Length = 374
Score = 29.2 bits (64), Expect = 0.97
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 143 IADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDII 188
+ F +++ + NS T A LA+ +A + +DI+
Sbjct: 23 VNRFEQSVKDYS--KSENALALNSATAALHLALRVAGV--KQDDIV 64
>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ
{Enterobacter aerogenes [TaxId: 548]}
Length = 271
Score = 28.1 bits (61), Expect = 1.9
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 76 FHLYSKPLNVVDGKMQYLFDENGRRY---LDAFGGIATVCCGHCHPYVVDSIVNQIKRIQ 132
++ PL + + +M + ENG R ++ F + + CGH H + +
Sbjct: 153 IFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTL 212
Query: 133 HSTVLYLNHAIADFAEALASKMPG 156
TV + + AD
Sbjct: 213 PGTVHQVPYCHADTDPYYDLSPAS 236
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 28.2 bits (61), Expect = 2.2
Identities = 10/37 (27%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 140 NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIM 176
I DF K G V TN EA +
Sbjct: 45 TPPIHDFIHNQLPKFLG-CDVARVTNGAREAKFAVMH 80
>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli
[TaxId: 562]}
Length = 391
Score = 28.0 bits (61), Expect = 2.8
Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 16/139 (11%)
Query: 101 YLDAFGGIATVCCGHCHPYVVDSIVNQIK---------RIQHSTVLYLNHAIADFAEALA 151
YLD AT P V + ++ + H A+ +A
Sbjct: 5 YLD---YSAT---TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIA 58
Query: 152 SKMPGNLKVVFFTNSGTEANELAIM-MARLYTGCNDIISLRNAYHGNAAGTMGATAQSNW 210
+ + + + FT+ TE++ LAI A Y I H T + +
Sbjct: 59 DLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGF 118
Query: 211 KFNVVQTGVHHALNPDPYR 229
+ + + ++
Sbjct: 119 EVTYLAPQRNGIIDLKELE 137
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 290
Score = 27.6 bits (61), Expect = 3.4
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 14/77 (18%)
Query: 2 QRFAAR-RVLSETNSLRLPQRCFFSQLAQKEESSLSEHETFLP------------RMPPF 48
R R L+E + + + L + +++ L P MPP
Sbjct: 12 ARRGERLLQLAEGHPMG-DYLRLVAGLCRLQQALLDNPPALAPLDPERLRKSREHGMPPL 70
Query: 49 DYSPPPYDGPSADEILA 65
Y +G + A
Sbjct: 71 AYDLLVREGAWLPWLDA 87
>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase
{Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}
Length = 377
Score = 27.4 bits (59), Expect = 3.6
Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 3/57 (5%)
Query: 139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYH 195
++ + ++ N + + +GT A E I A I +
Sbjct: 53 MDEIQSLLRYVWQTE---NPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGN 106
>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase
{Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}
Length = 388
Score = 27.3 bits (59), Expect = 3.7
Identities = 4/57 (7%), Positives = 11/57 (19%), Gaps = 3/57 (5%)
Query: 139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYH 195
++ ++ N + + S E + I
Sbjct: 52 MDEVKDGLRYIFQTE---NRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAE 105
>d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus
[TaxId: 63363]}
Length = 184
Score = 26.6 bits (58), Expect = 4.4
Identities = 16/72 (22%), Positives = 19/72 (26%), Gaps = 8/72 (11%)
Query: 285 KKAGGLCIADEVQAGFART-GSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTP---- 339
K A + G S G + VT G + GAVV
Sbjct: 86 KIACAFSSSGGWGGGNEVACMSILTMLMNFGFLVFGVTDYVGKKFTLHYGAVVAGEPRSE 145
Query: 340 ---EIAEVLTRR 348
E L RR
Sbjct: 146 EEKEACRRLGRR 157
>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate
aminotransferase {Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 26.9 bits (58), Expect = 5.6
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 159 KVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG 218
+V+ T SGT A E + L+ ++ + A + G
Sbjct: 51 EVLILTGSGTLAMEALV--KNLFAPGERVLVPVYGKFSERFYEIALEAGLVVERLDYPYG 108
>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}
Length = 250
Score = 26.2 bits (56), Expect = 6.9
Identities = 17/112 (15%), Positives = 31/112 (27%), Gaps = 3/112 (2%)
Query: 136 VLYL-NHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIISLRNAY 194
VL N A+ AE L M L +V TN ++ + D+
Sbjct: 13 VLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATA--GVDVPDSVFYT 70
Query: 195 HGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDL 246
A + + V + + H L + + + +
Sbjct: 71 SAMATADFLRRQEGKKAYVVGEGALIHELYKAGFTITDVNPDFVIVGETRSY 122
>d1e9yb1 b.92.1.1 (B:1-131,B:432-480) alpha-Subunit of urease
{Helicobacter pylori [TaxId: 210]}
Length = 180
Score = 26.2 bits (58), Expect = 6.9
Identities = 10/48 (20%), Positives = 14/48 (29%)
Query: 301 ARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRR 348
A W GV P+++ I A + P V R
Sbjct: 130 AGADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYRE 177
>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 269
Score = 26.5 bits (58), Expect = 7.5
Identities = 7/51 (13%), Positives = 18/51 (35%)
Query: 104 AFGGIATVCCGHCHPYVVDSIVNQIKRIQHSTVLYLNHAIADFAEALASKM 154
+ G + C P+ S +I+ + + +D + ++M
Sbjct: 199 SLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYSDELNEIITRM 249
>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 26.2 bits (56), Expect = 8.3
Identities = 6/51 (11%), Positives = 16/51 (31%), Gaps = 3/51 (5%)
Query: 139 LNHAIADFAEALASKMPGNLKVVFFTNSGTEANELAIMMARLYTGCNDIIS 189
++ ++ N + + SG A E A++ + +
Sbjct: 54 MDEIKEGIQYVFQTR---NPLTLVISGSGHCALEAALVNVLEPGDSFLVGA 101
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.416
Gapped
Lambda K H
0.267 0.0399 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,717,938
Number of extensions: 83265
Number of successful extensions: 305
Number of sequences better than 10.0: 1
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 41
Length of query: 447
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 359
Effective length of database: 1,199,356
Effective search space: 430568804
Effective search space used: 430568804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)