Your job contains 1 sequence.
>013236
MREDEETRSKKEHESQQEQETEGPKKKNKKRKKDKANTTIDEQPEPELEPERVKAKVQFI
PEQPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSV
DYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGK
GEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVKINKEAL
ESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDAYPSF
VCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLT
SFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCK
LLREKNMLYATLPVPLQFPKAIQRRRR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013236
(447 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2088257 - symbol:AT3G13940 species:3702 "Arabi... 906 7.3e-91 1
UNIPROTKB|I3LJI4 - symbol:POLR1E "Uncharacterized protein... 238 8.6e-18 1
UNIPROTKB|Q3SZ29 - symbol:POLR1E "Polymerase (RNA) I poly... 232 6.6e-17 1
UNIPROTKB|F1ST74 - symbol:POLR1E "Uncharacterized protein... 223 5.0e-16 1
ZFIN|ZDB-GENE-050522-251 - symbol:polr1e "polymerase (RNA... 224 5.3e-16 1
UNIPROTKB|F1PJ44 - symbol:POLR1E "Uncharacterized protein... 223 7.3e-16 1
UNIPROTKB|J9NVK4 - symbol:POLR1E "Uncharacterized protein... 223 1.1e-15 1
UNIPROTKB|Q9GZS1 - symbol:POLR1E "DNA-directed RNA polyme... 212 2.0e-14 1
DICTYBASE|DDB_G0290909 - symbol:rpa49 "putative RNA polym... 202 1.3e-13 1
POMBASE|SPAC2F3.03c - symbol:rpa49 "DNA-directed RNA poly... 203 1.5e-13 1
UNIPROTKB|I3LI66 - symbol:POLR1E "Uncharacterized protein... 191 1.9e-12 1
MGI|MGI:1929022 - symbol:Polr1e "polymerase (RNA) I polyp... 167 9.4e-12 2
RGD|1565773 - symbol:Polr1e "polymerase (RNA) I polypepti... 187 1.0e-11 1
UNIPROTKB|E7EX70 - symbol:POLR1E "DNA-directed RNA polyme... 163 3.1e-09 1
CGD|CAL0004338 - symbol:orf19.2017 species:5476 "Candida ... 155 3.2e-08 1
ASPGD|ASPL0000046514 - symbol:AN2283 species:162425 "Emer... 98 7.3e-05 2
UNIPROTKB|F1NXA7 - symbol:F1NXA7 "Uncharacterized protein... 84 0.00030 2
SGD|S000005192 - symbol:RPA49 "RNA polymerase I subunit A... 118 0.00047 1
>TAIR|locus:2088257 [details] [associations]
symbol:AT3G13940 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR009668 Pfam:PF06870 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0006351
EMBL:AB019229 GO:GO:0003899 KO:K03005 eggNOG:NOG301234
EMBL:AF360204 EMBL:AY040052 IPI:IPI00522793 RefSeq:NP_188010.1
UniGene:At.25305 UniGene:At.73186 ProteinModelPortal:Q9LVK6
SMR:Q9LVK6 IntAct:Q9LVK6 STRING:Q9LVK6 PaxDb:Q9LVK6 PRIDE:Q9LVK6
EnsemblPlants:AT3G13940.1 GeneID:820607 KEGG:ath:AT3G13940
TAIR:At3g13940 HOGENOM:HOG000239706 InParanoid:Q9LVK6 OMA:LISYVLV
PhylomeDB:Q9LVK6 ProtClustDB:CLSN2684826 ArrayExpress:Q9LVK6
Genevestigator:Q9LVK6 Uniprot:Q9LVK6
Length = 442
Score = 906 (324.0 bits), Expect = 7.3e-91, P = 7.3e-91
Identities = 186/410 (45%), Positives = 271/410 (66%)
Query: 42 EQPEPELEPERVKAKVQFIPEQPNKAPPLVGYFPSIYKPDVDHPDEEMR----PKVRVYR 97
E + E +RV KV + E+P++ P+V YF + Y P P R PKV VY+
Sbjct: 35 ETEDENEEDKRVTLKVTQVAERPDRISPIVAYFSTGYDPCKVDPKTGKRVHETPKVTVYK 94
Query: 98 NMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIA 157
+ ++ K R +++VVSP + V++VGT+Y+GE A Q Y VGV +R +TL+I+P+A
Sbjct: 95 HKDDSKKR---IQVVVSPPGARVEFVGTNYTGEQAAMQTNTYRVGVFNREAKTLRILPVA 151
Query: 158 ANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKE 217
NKI RLEPRV+ + +++A + E++ +K RY TKK++ + KK AL
Sbjct: 152 HNKIIRLEPRVKAQETNEEEASGSAVVKELE-ELKTGERDRYNTKKAVTRDKKKRALYMG 210
Query: 218 NDPESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWD 277
+D +QK L K+ + +N ALE T+S N+PPY+ ATT +AYPL+KII KG+W
Sbjct: 211 DDAATQKVLDGKLSELGVNTAALEGTSSTVARNIPPYNTAATTANEAYPLEKIIEKGDWS 270
Query: 278 FVQDIFNHVSAGSEVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQH 337
F++DI+ + +E ++AYP FV NR+++LR+I+DD++KQT+ + +THLVKFKD++
Sbjct: 271 FLEDIYWLLQQETEAATEAYPVFVRNRLYRLRDIKDDMKKQTVCGAATLLTHLVKFKDRN 330
Query: 338 SMDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPT 397
SM+G SAK H++P I QKF + F D+ES R+ DKI+LLISYVLVL+LH D+F T+P
Sbjct: 331 SMNGYDSAKDHKMPDIFRQKFNSMFKDSESDRIPVDKINLLISYVLVLSLHVDNFMTDPE 390
Query: 398 DIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYATLPVPLQFPKAIQRRRR 447
DIAKDLR+S +LR HF +LGCK L++ + ATLP PL FP+ + RRRR
Sbjct: 391 DIAKDLRISTVELRKHFLQLGCKFLKQNSTTVATLPTPLNFPE-VNRRRR 439
>UNIPROTKB|I3LJI4 [details] [associations]
symbol:POLR1E "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030054 "cell junction" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR009668 Pfam:PF06870 GO:GO:0005737
GO:GO:0005730 GO:GO:0003677 GO:GO:0030054 GO:GO:0009303
GO:GO:0003899 OMA:RRMNRVG GeneTree:ENSGT00390000018004
EMBL:CU137689 Ensembl:ENSSSCT00000029263 Uniprot:I3LJI4
Length = 386
Score = 238 (88.8 bits), Expect = 8.6e-18, P = 8.6e-18
Identities = 80/347 (23%), Positives = 170/347 (48%)
Query: 104 NRTGRMELVVSPRDSSVDYVGTSY-SGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIF 162
N R + +++ + YVG ++ +G C + VG+L++++ +++ ++F
Sbjct: 17 NPKKRSQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDA---EMF 73
Query: 163 RLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QSKKMHALNKEN-- 218
++P G D + ++ A M + ++ +GT K R S++M+ + E+
Sbjct: 74 NMQPLFTGRDTVASFLRRSAVTELSLAQMDSCIEA-FGTTKQKRALNSRRMNKVGSESLN 132
Query: 219 --DPESQKDLALKMKSVK-INKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGE 275
++ +D+ + K V + +A+ S D L +PP A+A P+ Y + ++ E
Sbjct: 133 RAVAKAAEDI-IDSKGVTALVSDAIHSDLQDDSLYLPPCHADAAKPEDVYKFEDVLSPAE 191
Query: 276 WDFVQ---DIFNHVSAGS--EVISD-AYPSFVCNRIHKLREIQDDVEKQTLASIFSYITH 329
+D +Q + F +V++ ++I + ++ SFV + L Q+ ++Q A ++
Sbjct: 192 YDALQSPSEAFRNVTSEQILKMIEENSHCSFVIEALKSLPSNQESRDRQ--ARCIWFLDT 249
Query: 330 LVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS----DAESKR--LSDDKIHLLISYVL 383
L+KF+ Q + SA IP ++ K L F+ + S R +SD + +YV+
Sbjct: 250 LIKFRAQKVIKR-KSALGPGIPHVISTKLLKHFTCLTYNNGSLRNVISDSMKAKITAYVI 308
Query: 384 VLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYA 430
+L LH +DF+ + T + +DL++SE ++ + + + K+ + K L A
Sbjct: 309 ILALHINDFQIDLTMLQRDLKLSEKRMMEIAKAMRLKISKRKVSLAA 355
>UNIPROTKB|Q3SZ29 [details] [associations]
symbol:POLR1E "Polymerase (RNA) I polypeptide E, 53kDa"
species:9913 "Bos taurus" [GO:0030054 "cell junction" evidence=IEA]
[GO:0009303 "rRNA transcription" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009668
Pfam:PF06870 GO:GO:0005737 GO:GO:0005730 GO:GO:0003677
GO:GO:0030054 GO:GO:0009303 GO:GO:0003899 KO:K03005 CTD:64425
eggNOG:NOG301234 HOGENOM:HOG000035116 HOVERGEN:HBG053490
OMA:RRMNRVG GeneTree:ENSGT00390000018004 EMBL:DAAA02023177
EMBL:BC103202 IPI:IPI00717883 RefSeq:NP_001029580.1
UniGene:Bt.49101 STRING:Q3SZ29 Ensembl:ENSBTAT00000016250
GeneID:511587 KEGG:bta:511587 InParanoid:Q3SZ29 OrthoDB:EOG40K805
NextBio:20870002 Uniprot:Q3SZ29
Length = 419
Score = 232 (86.7 bits), Expect = 6.6e-17, P = 6.6e-17
Identities = 83/382 (21%), Positives = 182/382 (47%)
Query: 95 VYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSY-SGEAMAPQFCHYAVGVLDRSTQTLKI 153
+Y+N N+ N R + +++ + YVG ++ +G C + VG+L++++ +++
Sbjct: 43 LYKN-NDSTNPRKRSQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEV 101
Query: 154 VPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QSKKM 211
++F ++P V + + + + + M + ++ +GT K R S++M
Sbjct: 102 YDA---ELFNMQPLFSDESVESESTPESQAKS-FREKMDSCIEA-FGTTKQKRALNSRRM 156
Query: 212 HALNKENDPESQKDLA---LKMKSVK-INKEALESTTSDTVLNVPPYDANATTPQQAYPL 267
+ + E+ + A + K V + +A+ D + +PP A+A P+ Y
Sbjct: 157 NKVGSESLNRAVAKAAENIIDTKGVTALVSDAIHDDLQDDSVCLPPCHADAAKPEDVYKF 216
Query: 268 DKIILKGEWDFVQ---DIFNHVSAGSEVIS----DAYPSFVCNRIHKLREIQDDVEKQTL 320
+ ++ E+D +Q + F +V++ E++ +++ SFV + L ++ ++Q
Sbjct: 217 EDLLSPVEYDALQSPSEAFRNVTS-EEILKMIEENSHCSFVIEALKSLPSNEESRDRQ-- 273
Query: 321 ASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDKI 375
A Y+ L+KF+ Q + SA +P I++ K L F+ + + L D +
Sbjct: 274 ARCIWYLDALIKFRAQKVIKR-KSALGPGVPHIINTKLLKQFTCLTYNNGSLRNLISDSM 332
Query: 376 HLLIS-YVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYA---- 430
I+ YV+VL LH + F+ + T + +DL++SE ++ + + + K+ + K L A
Sbjct: 333 KAKITAYVIVLALHINGFQIDLTMLQRDLKLSEKRMMEIAKAMRLKISKRKVSLAAGGEE 392
Query: 431 -----TLPVPLQFPKAIQRRRR 447
TL +PL +++ R+ +
Sbjct: 393 EHRLGTLSIPLPPAQSLDRQSK 414
>UNIPROTKB|F1ST74 [details] [associations]
symbol:POLR1E "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR009668 Pfam:PF06870 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GeneTree:ENSGT00390000018004 EMBL:CU137689
Ensembl:ENSSSCT00000005886 Uniprot:F1ST74
Length = 382
Score = 223 (83.6 bits), Expect = 5.0e-16, P = 5.0e-16
Identities = 81/348 (23%), Positives = 173/348 (49%)
Query: 104 NRTGRMELVVSPRDSSVDYVGTSY-SGEAMAPQFCHYAVGVLDRSTQTLKIVPIAA---N 159
N R + +++ + YVG ++ +G C + VG+L++++ +++
Sbjct: 12 NPKKRSQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDAEMFNMQ 71
Query: 160 KIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKEN- 218
+F +E +R D ++ A K A++ + ++A T+ K++L S++M+ + E+
Sbjct: 72 PLFTVEKVLRTGD-PEESASKFLEKAQMDSCIEAFGTTKQ--KRALN-SRRMNKVGSESL 127
Query: 219 ---DPESQKDLALKMKSVK-INKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKG 274
++ +D+ + K V + +A+ S D L +PP A+A P+ Y + ++
Sbjct: 128 NRAVAKAAEDI-IDSKGVTALVSDAIHSDLQDDSLYLPPCHADAAKPEDVYKFEDVLSPA 186
Query: 275 EWDFVQ---DIFNHVSAGS--EVISD-AYPSFVCNRIHKLREIQDDVEKQTLASIFSYIT 328
E+D +Q + F +V++ ++I + ++ SFV + L Q+ ++Q A ++
Sbjct: 187 EYDALQSPSEAFRNVTSEQILKMIEENSHCSFVIEALKSLPSNQESRDRQ--ARCIWFLD 244
Query: 329 HLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS----DAESKR--LSDDKIHLLISYV 382
L+KF+ Q + SA IP ++ K L F+ + S R +SD + +YV
Sbjct: 245 TLIKFRAQKVIKR-KSALGPGIPHVISTKLLKHFTCLTYNNGSLRNVISDSMKAKITAYV 303
Query: 383 LVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYA 430
++L LH +DF+ + T + +DL++SE ++ + + + K+ + K L A
Sbjct: 304 IILALHINDFQIDLTMLQRDLKLSEKRMMEIAKAMRLKISKRKVSLAA 351
>ZFIN|ZDB-GENE-050522-251 [details] [associations]
symbol:polr1e "polymerase (RNA) I polypeptide E"
species:7955 "Danio rerio" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR009668 Pfam:PF06870
ZFIN:ZDB-GENE-050522-251 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 KO:K03005 CTD:64425 eggNOG:NOG301234
HOGENOM:HOG000035116 HOVERGEN:HBG053490 OMA:RRMNRVG
GeneTree:ENSGT00390000018004 OrthoDB:EOG40K805 EMBL:BX548248
EMBL:BC095836 EMBL:BC153550 IPI:IPI00505189 RefSeq:NP_001018540.1
UniGene:Dr.84160 STRING:Q501W9 DNASU:553733
Ensembl:ENSDART00000054574 GeneID:553733 KEGG:dre:553733
InParanoid:Q501W9 NextBio:20880460 Uniprot:Q501W9
Length = 413
Score = 224 (83.9 bits), Expect = 5.3e-16, P = 5.3e-16
Identities = 81/346 (23%), Positives = 162/346 (46%)
Query: 95 VYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSY-SGEAMAPQFCHYAVGVLDRSTQTLKI 153
V+++ N R +VV+ D + YVG+++ SG + C Y VGVLD+ T +K+
Sbjct: 37 VFKHSNASNPRKKNRRIVVADSDR-LPYVGSNFGSGSLQSNNMCKYFVGVLDKQTMQMKV 95
Query: 154 VPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QSKKM 211
+ ++F + P + G A + + + S + + A+++ +GT K R S+++
Sbjct: 96 ---HSAQLFNMLPVIPGE--ATEAESENQPST-FRDKVDALIEA-FGTNKQKRALSSRRL 148
Query: 212 HALNKENDPESQKDLA---LKMKSVK-INKEALESTT-SDTVLNVPPYDANATTPQQAYP 266
+A+ E ++ A + K V+ + E +E+ SD L +PP +ANA + YP
Sbjct: 149 NAVGNETLHQAVAQAASNIIDQKGVEALRNEVIETEAQSDAALFLPPCNANADKLEDVYP 208
Query: 267 LDKIILKGEWDFVQDI-FNHVSAGSEVIS---DAY-PSFVCNRIHKLREIQDDVEKQTLA 321
D+++ E++ ++++ + + SE + D + P V + L + + D ++Q
Sbjct: 209 FDQLLTPNEFESLKEVGAKYATLSSEDLQKMRDNHCPQTVLKHLETLSKDEADRDRQCRC 268
Query: 322 SIFSYITHLVKFKDQHSMDGGASAKQHRI--PKILHQKFLTSFSDAESKRLSDDKIHL-L 378
+ + + + S G+ RI K+L + SF + + + + +
Sbjct: 269 AWYLSFVIRASLQKRISFKFGSDDGCPRIIINKVLKNFTVESFHNGSLRNTVSMSMRMKM 328
Query: 379 ISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLRE 424
SY L L LH N T + +D+ +SE K+ + + +G L R+
Sbjct: 329 ASYCLALLLHMGGQTANLTLLHRDMSISENKMLEVAKAMGLTLSRQ 374
>UNIPROTKB|F1PJ44 [details] [associations]
symbol:POLR1E "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009668 Pfam:PF06870
GO:GO:0005634 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03005
CTD:64425 GeneTree:ENSGT00390000018004 EMBL:AAEX03007968
RefSeq:XP_531998.2 Ensembl:ENSCAFT00000003730 GeneID:474767
KEGG:cfa:474767 Uniprot:F1PJ44
Length = 419
Score = 223 (83.6 bits), Expect = 7.3e-16, P = 7.3e-16
Identities = 76/357 (21%), Positives = 171/357 (47%)
Query: 95 VYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSY-SGEAMAPQFCHYAVGVLDRSTQTLKI 153
+Y++ N+ N R + +++ + YVG ++ +G C + VG+L++++ +++
Sbjct: 43 LYKS-NDSTNPRKRSQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMQV 101
Query: 154 VPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QSKKM 211
++F ++P + + + D + + + M + ++ +GT K R S++M
Sbjct: 102 YDA---ELFNMQP-LFADESLESDLTQESQAKTFREKMDSCIEA-FGTTKQKRALNSRRM 156
Query: 212 HALNKEN-----DPESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYP 266
+ + E+ ++ + K + +N +A+ D L +PP A+A P+ Y
Sbjct: 157 NTVGSESLNCAVAKAAENIIDAKGVTALVN-DAIHDDLQDDSLYLPPCHADAAKPEDVYK 215
Query: 267 LDKIILKGEWDFVQ---DIFNHVSAGSEVIS----DAYPSFVCNRIHKLREIQDDVEKQT 319
+ ++ E++ +Q + F +VS+ E++ +++ SFV + L D+ +
Sbjct: 216 FEDLLSTAEYEALQSPSEAFRNVSS-EEILKMIEENSHCSFVIEALKSLPS--DEKSRDR 272
Query: 320 LASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDK 374
A ++ L+KF+ Q + SA IP +++ K L F+ + + L D
Sbjct: 273 QARCIWFLDTLIKFRAQKVVKR-KSALGPGIPHVINTKLLKHFTCLTYNNGSLRNLISDS 331
Query: 375 IHLLIS-YVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYA 430
+ I+ YV++L LH DF+ + T + +DL++SE ++ + + + K+ + K L A
Sbjct: 332 MKAKITAYVIILALHISDFQIDLTMLQRDLKLSERRMIEIAKAMRLKISKRKVSLAA 388
>UNIPROTKB|J9NVK4 [details] [associations]
symbol:POLR1E "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009668 Pfam:PF06870
GO:GO:0005634 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 OMA:RRMNRVG
GeneTree:ENSGT00390000018004 EMBL:AAEX03007968
Ensembl:ENSCAFT00000049125 Uniprot:J9NVK4
Length = 477
Score = 223 (83.6 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 76/357 (21%), Positives = 171/357 (47%)
Query: 95 VYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSY-SGEAMAPQFCHYAVGVLDRSTQTLKI 153
+Y++ N+ N R + +++ + YVG ++ +G C + VG+L++++ +++
Sbjct: 101 LYKS-NDSTNPRKRSQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMQV 159
Query: 154 VPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QSKKM 211
++F ++P + + + D + + + M + ++ +GT K R S++M
Sbjct: 160 YDA---ELFNMQP-LFADESLESDLTQESQAKTFREKMDSCIEA-FGTTKQKRALNSRRM 214
Query: 212 HALNKEN-----DPESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYP 266
+ + E+ ++ + K + +N +A+ D L +PP A+A P+ Y
Sbjct: 215 NTVGSESLNCAVAKAAENIIDAKGVTALVN-DAIHDDLQDDSLYLPPCHADAAKPEDVYK 273
Query: 267 LDKIILKGEWDFVQ---DIFNHVSAGSEVIS----DAYPSFVCNRIHKLREIQDDVEKQT 319
+ ++ E++ +Q + F +VS+ E++ +++ SFV + L D+ +
Sbjct: 274 FEDLLSTAEYEALQSPSEAFRNVSS-EEILKMIEENSHCSFVIEALKSLPS--DEKSRDR 330
Query: 320 LASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDK 374
A ++ L+KF+ Q + SA IP +++ K L F+ + + L D
Sbjct: 331 QARCIWFLDTLIKFRAQKVVKR-KSALGPGIPHVINTKLLKHFTCLTYNNGSLRNLISDS 389
Query: 375 IHLLIS-YVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYA 430
+ I+ YV++L LH DF+ + T + +DL++SE ++ + + + K+ + K L A
Sbjct: 390 MKAKITAYVIILALHISDFQIDLTMLQRDLKLSERRMIEIAKAMRLKISKRKVSLAA 446
>UNIPROTKB|Q9GZS1 [details] [associations]
symbol:POLR1E "DNA-directed RNA polymerase I subunit RPA49"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0009303 "rRNA
transcription" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030054 "cell junction"
evidence=IDA] InterPro:IPR009668 Pfam:PF06870 GO:GO:0005737
GO:GO:0005730 GO:GO:0003677 GO:GO:0030054 GO:GO:0009303
GO:GO:0003899 KO:K03005 EMBL:AK023452 EMBL:AK024032 EMBL:AK091294
EMBL:CR457313 EMBL:AL158156 EMBL:BC001337 EMBL:BC014331
IPI:IPI00251989 IPI:IPI00550638 RefSeq:NP_071935.1
UniGene:Hs.591087 UniGene:Hs.733126 ProteinModelPortal:Q9GZS1
SMR:Q9GZS1 DIP:DIP-27546N IntAct:Q9GZS1 MINT:MINT-1137773
STRING:Q9GZS1 PhosphoSite:Q9GZS1 DMDM:62901107 SWISS-2DPAGE:Q9GZS1
PaxDb:Q9GZS1 PRIDE:Q9GZS1 DNASU:64425 Ensembl:ENST00000377792
Ensembl:ENST00000377798 GeneID:64425 KEGG:hsa:64425 UCSC:uc003zzy.1
UCSC:uc003zzz.1 CTD:64425 GeneCards:GC09P037486 HGNC:HGNC:17631
HPA:HPA022527 neXtProt:NX_Q9GZS1 PharmGKB:PA142671136
eggNOG:NOG301234 HOGENOM:HOG000035116 HOVERGEN:HBG053490
InParanoid:Q9GZS1 OMA:RRMNRVG PhylomeDB:Q9GZS1 GenomeRNAi:64425
NextBio:66425 ArrayExpress:Q9GZS1 Bgee:Q9GZS1 CleanEx:HS_POLR1E
Genevestigator:Q9GZS1 GermOnline:ENSG00000137054 Uniprot:Q9GZS1
Length = 481
Score = 212 (79.7 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 76/351 (21%), Positives = 168/351 (47%)
Query: 95 VYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSY-SGEAMAPQFCHYAVGVLDRSTQTLKI 153
+Y N + N R + +++ + YVG ++ +G C + VG+L++++ +++
Sbjct: 105 LYEN-KDSTNPRKRNQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEV 163
Query: 154 VPIAANKIFRLEPRVRGSDVA-DKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QSKK 210
++F ++P SDV+ + + + + M + ++ +GT K R +++
Sbjct: 164 YDA---ELFNMQPLF--SDVSVESELALESQTKTYREKMDSCIEA-FGTTKQKRALNTRR 217
Query: 211 MHALNKENDPESQKDLA---LKMKSVK-INKEALESTTSDTVLNVPP-YDANATTPQQAY 265
M+ + E+ + A + K V + +A+ + D L +PP YD +A P+ Y
Sbjct: 218 MNRVGNESLNRAVAKAAETIIDTKGVTALVSDAIHNDLQDDSLYLPPCYD-DAAKPEDVY 276
Query: 266 PLDKIILKGEWDFVQ---DIFNHVSAGSEVISDAYPSFVCNR-IHKLREIQDDVE-KQTL 320
+ ++ E++ +Q + F +V++ E++ + C I L+ + DVE +
Sbjct: 277 KFEDLLSPAEYEALQSPSEAFRNVTS-EEILKMIEENSHCTFVIEALKSLPSDVESRDRQ 335
Query: 321 ASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDKI 375
A ++ L+KF+ H + SA +P I++ K L F+ + + L D +
Sbjct: 336 ARCIWFLDTLIKFR-AHRVVKRKSALGPGVPHIINTKLLKHFTCLTYNNGRLRNLISDSM 394
Query: 376 HLLIS-YVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREK 425
I+ YV++L LH DF+ + T + +DL++SE ++ + + + K+ + +
Sbjct: 395 KAKITAYVIILALHIHDFQIDLTVLQRDLKLSEKRMMEIAKAMRLKISKRR 445
>DICTYBASE|DDB_G0290909 [details] [associations]
symbol:rpa49 "putative RNA polymerase I subunit"
species:44689 "Dictyostelium discoideum" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR009668 Pfam:PF06870
dictyBase:DDB_G0290909 GO:GO:0003677 GenomeReviews:CM000154_GR
GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 EMBL:AAFI02000172
RefSeq:XP_635474.1 STRING:Q54FE8 PRIDE:Q54FE8
EnsemblProtists:DDB0216301 GeneID:8627890 KEGG:ddi:DDB_G0290909
eggNOG:euNOG34989 KO:K03005 OMA:ILPPRIF ProtClustDB:CLSZ2733092
Uniprot:Q54FE8
Length = 375
Score = 202 (76.2 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 80/328 (24%), Positives = 155/328 (47%)
Query: 127 YSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAE 186
Y E ++ YA+G+ D++T+ LKIVP KI + V G + D+ IS E
Sbjct: 62 YESEDKDSKYAKYAIGIFDKNTKQLKIVP---TKIQTMNQSVIGYTLT-LDSSS-VISRE 116
Query: 187 VQAN-MKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVK-INKEALESTT 244
+ + +K + D+ +G+K + ++ +KM N EN D KS+ + E + +
Sbjct: 117 ERYDKIKKLADS-FGSKITKKKMQKMEMENVEN-----LDYEKTTKSIDAVKNELADIES 170
Query: 245 SDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFV--QDIFNHVSAGSEVISDAYPSFVC 302
++ ++P +DA ++ Y ++ I+ + + Q + +S SE S P +
Sbjct: 171 NEKPFDLPDFDAETNDVRKIYNIEAILPPRIFFGLNHQPFLDIISKTSEAPS-YLPEYFK 229
Query: 303 NRIHKLREIQDD---VEKQTLASIFSYITHLVKFKDQHS--MDGGASAKQHRIPKILHQK 357
+++ + +I+D+ V L + Y L+K K H + G +++ + L
Sbjct: 230 DQLKRFEDIKDEEKVVYNCKLLTFMWYSMILMKSKGGHEPLIKEGCTSE---VINFLVSI 286
Query: 358 FLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFR-TNPTDIAKDLRMSEFKLRDHFEK 416
F + + + DDK+ + +Y+ + L +DF+ T+ +A+ L ++ HF +
Sbjct: 287 FGSKINHKKYNISQDDKLKIY-NYLAIFALKLEDFQITDIKSLAQSLSLTSSSFEKHFTR 345
Query: 417 LGCKLLR---EKNMLYATLPVPLQFPKA 441
+GCK++R EK + L PL+ PKA
Sbjct: 346 VGCKVVRIGSEKRSV--RLEAPLKLPKA 371
>POMBASE|SPAC2F3.03c [details] [associations]
symbol:rpa49 "DNA-directed RNA polymerase I complex
subunit Rpa49 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=ISO] [GO:0006360
"transcription from RNA polymerase I promoter" evidence=ISO]
InterPro:IPR009668 Pfam:PF06870 PomBase:SPAC2F3.03c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006360 GO:GO:0005736
GO:GO:0003899 KO:K03005 eggNOG:NOG301234 EMBL:AJ278613 PIR:T38536
RefSeq:NP_594382.1 STRING:O14086 EnsemblFungi:SPAC2F3.03c.1
GeneID:2541914 KEGG:spo:SPAC2F3.03c OMA:QNEDKLL OrthoDB:EOG4C2MKC
NextBio:20803001 Uniprot:O14086
Length = 425
Score = 203 (76.5 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 99/424 (23%), Positives = 180/424 (42%)
Query: 57 VQFIPEQPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPR 116
V+ +P + PPLV Y P+ R + +K N++ R ++ R
Sbjct: 24 VKILPLSESSLPPLVTTISGFYPPE----------NTRF--QLLKKSNQSNRDASLIG-R 70
Query: 117 DSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADK 176
V + + S + +C + V D++ + KIVP A + E + DK
Sbjct: 71 TERVQFEAKNQSTATVEANYC---LAVADKTGRVKKIVP--AKYLNTFERNILALQEKDK 125
Query: 177 DAGK--GEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKS-V 233
K G +S V +A L +GT+KS + + A N+ E+ D+ ++ S V
Sbjct: 126 FLKKKHGTVSGTVM-EQRANLGLAFGTRKSQKAIMEESA-NRVK-AETLGDVKDQLVSNV 182
Query: 234 KINKEALESTTSDTVLN-----VPPYDANATTPQQAYPLDKIILKGEWD--FVQDIFNHV 286
+ EAL + +PP + A + + AY L+ II K E+ +++ + +
Sbjct: 183 QKATEALPTQEDIAAAQAQDRPIPPVNVGAESIEDAYKLEDIIPKEEFSAIYIKPLLENP 242
Query: 287 SAGS--EVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGAS 344
+ +++ + F+ R +L I++ +K+ A I YI+ L F G
Sbjct: 243 DERNWAKLLPYRHSLFINERFQRLLSIEEVDQKR--ARILYYISLLQAFLFSRRSVGNRE 300
Query: 345 AKQHRI---PKILHQKFLTSFSDAE---SKRLSDDKIHLLISYVLVLTLHADDFRTNPTD 398
+ ++ P+IL + F+ S ++S ++ +I Y+LVL L D++ T+
Sbjct: 301 TLRKKLADPPEILIDGLIKRFTQTTGIGSVQVSSREVDKIICYILVLCLIVDNYSTDVLT 360
Query: 399 IAKDLRMSEFKLRDHFEKLGCKLLR---------------EKNMLYATLPVPLQFPKAIQ 443
+A DL + K + F +GC+++ KN A L +PL+FPK +
Sbjct: 361 LANDLNVKTMKANELFRTVGCRIMAYTETQRMALGLNKTDAKNHKRAVLKIPLEFPKPRR 420
Query: 444 RRRR 447
R R
Sbjct: 421 GRAR 424
>UNIPROTKB|I3LI66 [details] [associations]
symbol:POLR1E "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR009668 Pfam:PF06870 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GeneTree:ENSGT00390000018004 EMBL:CU137689
Ensembl:ENSSSCT00000027826 Uniprot:I3LI66
Length = 351
Score = 191 (72.3 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 67/262 (25%), Positives = 133/262 (50%)
Query: 188 QANMKAMLDTRYGTKKSLR--QSKKMHALNKEN----DPESQKDLALKMKSVK-INKEAL 240
Q NM + ++ +GT K R S++M+ + E+ ++ +D+ + K V + +A+
Sbjct: 64 QTNMDSCIEA-FGTTKQKRALNSRRMNKVGSESLNRAVAKAAEDI-IDSKGVTALVSDAI 121
Query: 241 ESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQ---DIFNHVSAGS--EVISD 295
S D L +PP A+A P+ Y + ++ E+D +Q + F +V++ ++I +
Sbjct: 122 HSDLQDDSLYLPPCHADAAKPEDVYKFEDVLSPAEYDALQSPSEAFRNVTSEQILKMIEE 181
Query: 296 -AYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKIL 354
++ SFV + L Q+ ++Q A ++ L+KF+ Q + SA IP ++
Sbjct: 182 NSHCSFVIEALKSLPSNQESRDRQ--ARCIWFLDTLIKFRAQKVIKR-KSALGPGIPHVI 238
Query: 355 HQKFLTSFS----DAESKR--LSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEF 408
K L F+ + S R +SD + +YV++L LH +DF+ + T + +DL++SE
Sbjct: 239 STKLLKHFTCLTYNNGSLRNVISDSMKAKITAYVIILALHINDFQIDLTMLQRDLKLSEK 298
Query: 409 KLRDHFEKLGCKLLREKNMLYA 430
++ + + + K+ + K L A
Sbjct: 299 RMMEIAKAMRLKISKRKVSLAA 320
>MGI|MGI:1929022 [details] [associations]
symbol:Polr1e "polymerase (RNA) I polypeptide E"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0009303 "rRNA transcription" evidence=IDA]
Reactome:REACT_78136 InterPro:IPR009668 Pfam:PF06870
MGI:MGI:1929022 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0003677 GO:GO:0030054 GO:GO:0009303 GO:GO:0003899
EMBL:AL824706 Reactome:REACT_86751 KO:K03005 CTD:64425
eggNOG:NOG301234 HOGENOM:HOG000035116 HOVERGEN:HBG053490
OMA:RRMNRVG EMBL:D14336 EMBL:AK050780 EMBL:BC034783 IPI:IPI00120981
IPI:IPI00321912 IPI:IPI00556836 PIR:S69245 RefSeq:NP_073722.1
UniGene:Mm.282932 ProteinModelPortal:Q8K202 SMR:Q8K202
STRING:Q8K202 PhosphoSite:Q8K202 PRIDE:Q8K202
Ensembl:ENSMUST00000029999 Ensembl:ENSMUST00000107814
Ensembl:ENSMUST00000133157 GeneID:64424 KEGG:mmu:64424
UCSC:uc012ddk.1 GeneTree:ENSGT00390000018004 InParanoid:B1AXQ6
NextBio:320075 Bgee:Q8K202 CleanEx:MM_POLR1E Genevestigator:Q8K202
GermOnline:ENSMUSG00000028318 Uniprot:Q8K202
Length = 482
Score = 167 (63.8 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 58/239 (24%), Positives = 118/239 (49%)
Query: 202 KKSLRQSKKMHALNKENDPESQKDLALKMKSVK-IN---KEALESTTSDTVLNVPPYDAN 257
K+SL S++M+ + E+ S A + K +N +A++ D VL +PP A+
Sbjct: 211 KRSLN-SRRMNKVGSESLNLSVAKAAESIIDTKGVNALVSDAMQDDLQDGVLYLPPCYAD 269
Query: 258 ATTPQQAYPLDKIILKGEWDFVQ---DIFNHVSAGSEVISDAYPSFVCNR-IHKLREIQ- 312
A P+ Y + I+ E+D ++ + F V++ +++ + C+ I L+ +
Sbjct: 270 AAKPEDVYRFEDILSPAEYDALESPSEAFRKVTS-EDILKMIEENSHCSYVIEMLKSLPI 328
Query: 313 DDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAES 367
D+V + A ++ L++F+ Q + G A IP I++ K L F+ +
Sbjct: 329 DEVHRNRQARSIWFLDALIRFRAQKVIKG-KRALGPGIPHIINTKLLKQFTCLTYNNGRL 387
Query: 368 KRLSDDKIHLLI-SYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREK 425
+ L + I SY ++L LH ++F+ + T + KDL++SE ++ + + + K+ ++K
Sbjct: 388 QNLISSSMRAKITSYAIILALHINNFQVDLTALQKDLKLSEKRMIEIAKAMRLKISKQK 446
Score = 65 (27.9 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 15/74 (20%), Positives = 35/74 (47%)
Query: 98 NMNEKKNRTGRMELVVSPRDSSVDYVGTSY-SGEAMAPQFCHYAVGVLDRSTQTLKIVPI 156
N + N R +V+ + YVG ++ +G C + VG+L++++ +++
Sbjct: 60 NSTDLVNPRQRSHRIVAAETDRLSYVGNNFGTGALKCNALCRHFVGILNKTSGQMEVYDA 119
Query: 157 AANKIFRLEPRVRG 170
++F ++P G
Sbjct: 120 ---ELFNMQPLFAG 130
>RGD|1565773 [details] [associations]
symbol:Polr1e "polymerase (RNA) I polypeptide E" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0009303 "rRNA transcription" evidence=IEA;ISO] [GO:0030054
"cell junction" evidence=IEA;ISO] InterPro:IPR009668 Pfam:PF06870
RGD:1565773 GO:GO:0005737 GO:GO:0005730 GO:GO:0003677 GO:GO:0030054
EMBL:CH473962 GO:GO:0009303 GO:GO:0003899 KO:K03005 CTD:64425
eggNOG:NOG301234 HOGENOM:HOG000035116 HOVERGEN:HBG053490
OMA:RRMNRVG GeneTree:ENSGT00390000018004 OrthoDB:EOG40K805
EMBL:BC158699 IPI:IPI00562982 RefSeq:NP_001101408.1
UniGene:Rn.11499 STRING:B0BN64 Ensembl:ENSRNOT00000029704
GeneID:313245 KEGG:rno:313245 UCSC:RGD:1565773 NextBio:665902
Genevestigator:B0BN64 Uniprot:B0BN64
Length = 434
Score = 187 (70.9 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 67/347 (19%), Positives = 161/347 (46%)
Query: 98 NMNEKKNRTGRMELVVSPRDSSVDYVGTSY-SGEAMAPQFCHYAVGVLDRSTQTLKIVPI 156
N + N + +++ + YVG ++ +G C + VG+L++++ +++
Sbjct: 60 NSTDLVNPRQKCHRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDA 119
Query: 157 AANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQ--SKKMHAL 214
++F ++P + D + + + + + ++ +G+ K R S++M+ +
Sbjct: 120 ---EVFNMQP-LFAEDSIEHGPPLENQNKTFRDKLDSCIEA-FGSTKQKRSLNSRRMNKV 174
Query: 215 NKEN---DPESQKDLALKMKSVK-INKEALESTTSDTVLNVPPYDANATTPQQAYPLDKI 270
E+ + + K V + +A++ + L +PP A+AT P+ Y + I
Sbjct: 175 GSESLNFTVAKAAESIIDTKGVSALVSDAMQDDLQNDSLYLPPCHADATKPEDVYRFEDI 234
Query: 271 ILKGEWDFVQ---DIFNHVSAGS--EVISD-AYPSFVCNRIHKLREIQDDVEKQTLASIF 324
+ E+D ++ + F V + +++ + ++ SF+ + L D+V++ A
Sbjct: 235 LSPAEYDALESPSEAFRKVMSEDILKMVEENSHCSFIIEMLKSLPA--DEVQRNRQARSI 292
Query: 325 SYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDKIHLLI 379
++ L++F+ Q + G SA IP I++ K L F+ + + L + I
Sbjct: 293 WFLDALLRFRAQKVIKG-KSALGPGIPHIINTKLLKQFTCLTYNNGSLRNLISSSMKAKI 351
Query: 380 S-YVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREK 425
+ Y ++L LH ++F+ + T + +DL++SE ++ + + K+ + K
Sbjct: 352 TAYAIILALHINNFQIDLTVLQRDLKLSEKRMIEIARAMRLKISKRK 398
>UNIPROTKB|E7EX70 [details] [associations]
symbol:POLR1E "DNA-directed RNA polymerase I subunit RPA49"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR009668 Pfam:PF06870
GO:GO:0005634 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AL158156 HGNC:HGNC:17631 IPI:IPI00909522
ProteinModelPortal:E7EX70 Ensembl:ENST00000442009 UCSC:uc011lqk.1
ArrayExpress:E7EX70 Bgee:E7EX70 Uniprot:E7EX70
Length = 349
Score = 163 (62.4 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 58/245 (23%), Positives = 119/245 (48%)
Query: 199 YGTKKSLR--QSKKMHALNKENDPESQKDLA---LKMKSVK-INKEALESTTSDTVLNVP 252
+GT K R +++M+ + E+ + A + K V + +A+ + D L +P
Sbjct: 72 FGTTKQKRALNTRRMNRVGNESLNRAVAKAAETIIDTKGVTALVSDAIHNDLQDDSLYLP 131
Query: 253 P-YDANATTPQQAYPLDKIILKGEWDFVQ---DIFNHVSAGSEVISDAYPSFVCNR-IHK 307
P YD +A P+ Y + ++ E++ +Q + F +V++ E++ + C I
Sbjct: 132 PCYD-DAAKPEDVYKFEDLLSPAEYEALQSPSEAFRNVTS-EEILKMIEENSHCTFVIEA 189
Query: 308 LREIQDDVE-KQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS--- 363
L+ + DVE + A ++ L+KF+ H + SA +P I++ K L F+
Sbjct: 190 LKSLPSDVESRDRQARCIWFLDTLIKFR-AHRVVKRKSALGPGVPHIINTKLLKHFTCLT 248
Query: 364 --DAESKRLSDDKIHLLIS-YVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCK 420
+ + L D + I+ YV++L LH DF+ + T + +DL++SE ++ + + + K
Sbjct: 249 YNNGRLRNLISDSMKAKITAYVIILALHIHDFQIDLTVLQRDLKLSEKRMMEIAKAMRLK 308
Query: 421 LLREK 425
+ + +
Sbjct: 309 ISKRR 313
>CGD|CAL0004338 [details] [associations]
symbol:orf19.2017 species:5476 "Candida albicans" [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0006362
"transcription elongation from RNA polymerase I promoter"
evidence=IEA] [GO:0008361 "regulation of cell size" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] InterPro:IPR009668
Pfam:PF06870 CGD:CAL0004338 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 EMBL:AACQ01000031 EMBL:AACQ01000030 GO:GO:0003899
KO:K03005 eggNOG:NOG301234 HOGENOM:HOG000057118 RefSeq:XP_719466.1
RefSeq:XP_719593.1 STRING:Q5AD50 GeneID:3638767 GeneID:3638834
KEGG:cal:CaO19.2017 KEGG:cal:CaO19.9567 Uniprot:Q5AD50
Length = 393
Score = 155 (59.6 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 92/376 (24%), Positives = 166/376 (44%)
Query: 108 RMELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKI--VPIAANKIFRLE 165
R + V+ ++DY GTS + Y V V D +++++++ P + K+ +
Sbjct: 41 RDDYVLHGETDTLDYNGTSNNEN-------EYVVAVFDPNSKSVELYKTPYISTKVTAKK 93
Query: 166 PRV-RGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKEN-DPESQ 223
RV +G V K AG ++ Q N L +GTKK+ + L K D E
Sbjct: 94 NRVYKGPKV--KSAGIRNVT---QRNA---LGEAFGTKKA---KSAITNLEKNRIDSEKL 142
Query: 224 KDLALKM-KSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDI 282
+D+ + + +VK + L + P + +AT + YPL+ II + +W +++ +
Sbjct: 143 QDIEMDIVDTVKESTRDLPAQEDGVDRPAPLANVDATNVEDIYPLENIIPEKDWQYLR-V 201
Query: 283 FNHVSAGS--EVISDAYPSFVCNRIHKLREIQDDVEK-QTL--ASIFSYITHLVKFKDQH 337
+ ++A + E + F+ ++ L Q + EK Q L AS+ + + KD+
Sbjct: 202 SSILTAENPLEKLPFTKSEFIAKQLPILIS-QKNTEKLQMLFYASLLLGVYENRRVKDKQ 260
Query: 338 SMDGGASAKQHRIP-KILHQKFL--------TSFSDAESKRLSDDKIH--LLISYVLVLT 386
S+ + IP +IL L T F ++ K + D H L++Y+ +L
Sbjct: 261 SL----MTRLQNIPSEILVDGILDRFAISRATKFGKSKDKSFTIDPYHEDKLLTYLFILL 316
Query: 387 LHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKL----LREKNML---------Y--AT 431
LH ++F ++KDL++ +L F LG + + E L Y AT
Sbjct: 317 LHINNFTVELVPLSKDLKLKNTRLVGLFRALGAIIKSATVGEAEALGIPKSAVGTYKIAT 376
Query: 432 LPVPLQFPKAIQRRRR 447
L VP + P+ +R +R
Sbjct: 377 LKVPFKLPELTRRGKR 392
>ASPGD|ASPL0000046514 [details] [associations]
symbol:AN2283 species:162425 "Emericella nidulans"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR009668 Pfam:PF06870 GO:GO:0005634
GO:GO:0003677 EMBL:BN001307 GO:GO:0006351 EMBL:AACD01000038
GO:GO:0003899 KO:K03005 OMA:YFRELGC RefSeq:XP_659887.1
STRING:Q5BAZ7 EnsemblFungi:CADANIAT00008975 GeneID:2875286
KEGG:ani:AN2283.2 eggNOG:NOG285121 HOGENOM:HOG000172308
OrthoDB:EOG41G6CS Uniprot:Q5BAZ7
Length = 494
Score = 98 (39.6 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 61/279 (21%), Positives = 116/279 (41%)
Query: 111 LVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRG 170
L+ S +D+VG + +A + Q HY V V+D +++T + V + + L VR
Sbjct: 89 LLQSSEHPKLDFVGREANEDADS-QLKHY-VAVVDPASKTWEFVEV---RRITLRGAVRR 143
Query: 171 SDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKE--NDPESQKDLAL 228
+ D++ + + + L +GTKKS + ++ M A N + N P A
Sbjct: 144 AAEEDEEEESEDEEMKTMREQRTDLTYTFGTKKSRKATQSM-AENAQLSNAPSGAATAAE 202
Query: 229 KMKSVKINKE-ALESTTSDTVLN--------VPPYDANATTPQQAYPLDKIILKGEWDF- 278
+ E AL+ + +P + +A P + YPL+ +I G+
Sbjct: 203 SALLESMPAESALDIAAKSAAVQAEVQAAKPLPQANLDAKHPSEVYPLETLIPNGKATLR 262
Query: 279 ---VQDIFNHVSAGSEVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKD 335
+++ + +SAG V + + +V +RI + E + Q L + LV +
Sbjct: 263 QLPIKEWQDTISAGLTVATTS--RYVSSRIDDIVESGNTTHLQILRFV------LVLLEL 314
Query: 336 QHSMDGGASAKQHRIPKILH-QKFLTSFSDAESKRLSDD 373
++ G R+P ++ L+ S + S +DD
Sbjct: 315 ARALRSGKGRGNKRLPSRDDLRRILSGGSKSSSDNSTDD 353
Score = 73 (30.8 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 14/56 (25%), Positives = 31/56 (55%)
Query: 390 DDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYATLPVPLQFPKAIQRR 445
++ T+P+D+ DL++ K+ +F +LGC++ + + +A + +A RR
Sbjct: 418 NEMATDPSDLRDDLQLDNAKITQYFRELGCRVDKPRETEFAKFGIRGGKAEAATRR 473
>UNIPROTKB|F1NXA7 [details] [associations]
symbol:F1NXA7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0009303 "rRNA transcription" evidence=IEA] [GO:0030054 "cell
junction" evidence=IEA] InterPro:IPR009668 Pfam:PF06870
GO:GO:0005737 GO:GO:0005730 GO:GO:0003677 GO:GO:0030054
GO:GO:0009303 GO:GO:0003899 OMA:RRMNRVG
GeneTree:ENSGT00390000018004 EMBL:AADN02071590 EMBL:AADN02071591
EMBL:AADN02071592 IPI:IPI00583951 Ensembl:ENSGALT00000008663
Uniprot:F1NXA7
Length = 348
Score = 84 (34.6 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 28/113 (24%), Positives = 55/113 (48%)
Query: 348 HRIPKILHQKFLT-SFSDAESKRLSDDKIHLLIS-YVLVLTLHADDFRTNPTDIAKDLRM 405
H I + L + F + ++++ + L + I+ YV+ L LH +F+T+ T + DL++
Sbjct: 233 HIISRKLMKNFTSLTYNNGSVQNLISASLKTKIAAYVIALALHIKNFQTDLTVLQNDLKL 292
Query: 406 SEFKLRDHFEKLGCKLLREKNML-----------YATLPVPLQFPKAIQRRRR 447
E ++ D + K+ + K M +LP+P+Q QR+R+
Sbjct: 293 HESRMMDIARAMRLKVSKAKGMPGLENDQNHKLGTLSLPLPVQKASGSQRKRK 345
Score = 78 (32.5 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 95 VYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKI 153
+YR+ R R ++VS + + YVG ++ AM C Y +GVL++ T +++
Sbjct: 43 LYRSSEVANPRKRRRRILVSETER-LSYVGNNFGSGAMKCNSLCRYFLGVLNKDTGQMEV 101
Query: 154 VPIAANKIFRLEP 166
+IF ++P
Sbjct: 102 YNA---EIFNMQP 111
>SGD|S000005192 [details] [associations]
symbol:RPA49 "RNA polymerase I subunit A49" species:4932
"Saccharomyces cerevisiae" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008361 "regulation of cell size" evidence=IMP] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IMP;IDA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IGI;IMP] [GO:0006362
"transcription elongation from RNA polymerase I promoter"
evidence=IDA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009668 Pfam:PF06870 SGD:S000005192 GO:GO:0003677
EMBL:BK006947 GO:GO:0008361 EMBL:X96722 GO:GO:0006362 GO:GO:0005736
GO:GO:0003899 GO:GO:0042790 KO:K03005 eggNOG:NOG301234
GeneTree:ENSGT00390000018004 OrthoDB:EOG4C2MKC EMBL:M96600
EMBL:Z71524 EMBL:AY558027 PIR:S63221 RefSeq:NP_014151.1 PDB:3NFH
PDB:3NFI PDBsum:3NFH PDBsum:3NFI ProteinModelPortal:Q01080
SMR:Q01080 DIP:DIP-6577N IntAct:Q01080 MINT:MINT-630569
STRING:Q01080 PaxDb:Q01080 PeptideAtlas:Q01080 EnsemblFungi:YNL248C
GeneID:855473 KEGG:sce:YNL248C CYGD:YNL248c HOGENOM:HOG000057118
OMA:YFRELGC EvolutionaryTrace:Q01080 NextBio:979424
Genevestigator:Q01080 GermOnline:YNL248C Uniprot:Q01080
Length = 415
Score = 118 (46.6 bits), Expect = 0.00047, P = 0.00047
Identities = 67/337 (19%), Positives = 150/337 (44%)
Query: 102 KKNRTGRMELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKI--VPIAAN 159
KK ++ + E V+ + ++Y G + S + Q Y VG+ + +++++ P+ +
Sbjct: 42 KKKKSEKDEFVLHGENERLEYEGYTDSSSQASNQ---YVVGLFNPEKKSIQLYKAPVLVS 98
Query: 160 KIF-RLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKEN 218
K+ + +RG + K + SA A +A T+ KK++ ++ + ++ +
Sbjct: 99 KVVSKSSKNLRGPKIKSKSDTRP--SALRNALGEAF-GTKKA-KKAIADLER-NRIDSDK 153
Query: 219 DPESQKDL--ALKMKSVKINKEA-LESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGE 275
+S D+ +++ S + A L+ TS+ P + +AT +Q YP++ II K E
Sbjct: 154 LTDSAIDIVDSVRTASKDLPTRAQLDEITSND-RPTPLANIDATDVEQIYPIESIIPKKE 212
Query: 276 WDFVQDIFNHVSAGSEVISDAYPSFVCNRIHKLREIQDDVE--KQTLASIFSYITHLVKF 333
F++ A E + +P + N + +++ + + T + Y++ L+
Sbjct: 213 LQFIRVSSILKEADKEKKLELFP-YQNNSKYVAKKLDSLTQPSQMTKLQLLYYLSLLLGV 271
Query: 334 KDQHSMDGGASAKQ--HRIPKILHQKFLTSFSDAESKRL--SDDKIHLL--------ISY 381
+ ++ + + P+IL L+ F+ + + S D+ + + + Y
Sbjct: 272 YENRRVNNKTKLLERLNSPPEILVDGILSRFTVIKPGQFGRSKDRSYFIDPQNEDKILCY 331
Query: 382 VLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLG 418
+L + +H D+F T +A +L + K+ F LG
Sbjct: 332 ILAIIMHLDNFIVEITPLAHELNLKPSKVVSLFRVLG 368
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.375 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 447 425 0.00084 118 3 11 22 0.43 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 605 (64 KB)
Total size of DFA: 241 KB (2130 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 41.42u 0.08s 41.50t Elapsed: 00:00:02
Total cpu time: 41.42u 0.08s 41.50t Elapsed: 00:00:02
Start: Fri May 10 04:47:59 2013 End: Fri May 10 04:48:01 2013