BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013236
(447 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224128536|ref|XP_002339506.1| predicted protein [Populus trichocarpa]
gi|222839699|gb|EEE78022.1| predicted protein [Populus trichocarpa]
Length = 472
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 233/426 (54%), Positives = 299/426 (70%), Gaps = 32/426 (7%)
Query: 39 TIDEQPEPELEPERVKAKVQFIPEQPNKAPPLVGYFPSIYKP----DVDHPDEEMRP--- 91
TI+EQP R+ K++ + Q +K PP+VGYFPS Y P D++ E + P
Sbjct: 47 TINEQP-------RLDVKLELVNNQVDKTPPVVGYFPSGYNPHKTNDINDAQEPILPLAA 99
Query: 92 --KVRVYRNM------------NEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAMAPQFC 137
V++YRN NEK + R+ELVVSP S+V++VG SY GEAMA Q C
Sbjct: 100 PPSVKLYRNAQRAKVEKSSGEKNEKGRTSERLELVVSPNGSNVEFVGNSYKGEAMAAQLC 159
Query: 138 HYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGK---GEISAEVQANMKAM 194
YA+GVLD++TQTLKI+PIA NKI RLEP++RGS ADK+ GEI+AE +A
Sbjct: 160 TYALGVLDKATQTLKIMPIAGNKILRLEPKLRGSLAADKEHANFENGEITAEQRAARIRQ 219
Query: 195 LDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVKINKEALESTTSDTVLNVPPY 254
L+ +YG KKS+ Q KKM AL K +DP SQKDL K+++ INK+ALEST+ + N+PPY
Sbjct: 220 LNVQYGPKKSIIQDKKMQALRKGDDPLSQKDLGRKIENAPINKDALESTSGHSARNIPPY 279
Query: 255 DANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDAYPSFVCNRIHKLREIQDD 314
+++A TPQ+AYPLD IIL GEWDF++DI+ + G EV S+AYP+FVCNRI KLREIQD+
Sbjct: 280 NSSAITPQEAYPLDGIILTGEWDFLEDIYKILQVGGEVASNAYPTFVCNRIQKLREIQDE 339
Query: 315 VEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDK 374
VEK+ L+ IFSYITHL+KFKDQHSMDG ASA+ H+ P I+ QKF F E++RLS DK
Sbjct: 340 VEKKRLSCIFSYITHLLKFKDQHSMDGAASARNHQFPSIIRQKFFEMFK-PETRRLSVDK 398
Query: 375 IHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYATLPV 434
I LLISYVLVLTL+ADDFRT P D++ DLRM+ ++ H+ LGCK+ REKN TL V
Sbjct: 399 IDLLISYVLVLTLYADDFRTFPADVSNDLRMNPATVKSHYRNLGCKMEREKNKYLVTLSV 458
Query: 435 PLQFPK 440
PL+FP+
Sbjct: 459 PLEFPQ 464
>gi|225442233|ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Vitis
vinifera]
Length = 421
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 237/401 (59%), Positives = 302/401 (75%), Gaps = 12/401 (2%)
Query: 53 VKAKVQFIPEQPNKAPPLVGYFPSIYKPD--VDHPDEEMRPKVRVYRNMNEKKNRTGRME 110
V K++ + E P K PPLVGYFPS + P DH + + P V+V+RN K R R++
Sbjct: 27 VNVKMEVVHEHPEKIPPLVGYFPSGFDPHKPQDH-ESDPPPAVKVFRN----KARANRLQ 81
Query: 111 LVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRG 170
LVVSP DS V++VGTSYSGEA + Q C YA+GVLD+ TQTLKIVPIA+NKIFRLEPRV G
Sbjct: 82 LVVSPNDSKVNFVGTSYSGEAASAQVCTYALGVLDKETQTLKIVPIASNKIFRLEPRVGG 141
Query: 171 SDVADKDAG---KGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLA 227
SD + + KGE +AE +A L YGTKKS+ Q+KK+ ALN+++DP SQKDL
Sbjct: 142 SDASVDEPSSLLKGEQTAEEKAGRMRDLTNLYGTKKSITQAKKLQALNQKDDPRSQKDLD 201
Query: 228 LKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVS 287
K+K V INKEALEST++ + N+PPYD ATTPQ+AY LDKII KGEWD++ DI + +
Sbjct: 202 RKLKEVVINKEALESTSAHSARNIPPYDDTATTPQEAYRLDKIIFKGEWDYLLDILDLLQ 261
Query: 288 AGSEVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQ 347
AG EV S AY SFVCNRI KL+E++D+ EK TLA IFSYI HL+K+KD++SMD +SAK
Sbjct: 262 AGVEVESSAYSSFVCNRIQKLKELEDEGEKTTLACIFSYINHLLKYKDRNSMD-ASSAKH 320
Query: 348 HRIPKILHQKFLTSFS-DAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMS 406
H+IP IL+QKF + F+ D++S+RL+++K LLISYVLVLTL+AD+FRT+P+DIA+DLRMS
Sbjct: 321 HKIPGILNQKFSSMFALDSDSRRLTEEKKDLLISYVLVLTLYADEFRTDPSDIARDLRMS 380
Query: 407 EFKLRDHFEKLGCKLLREKNMLYATLPVPLQFPKAIQRRRR 447
KLR HFE LGCKL+ + + ATLPVPL FP+ Q+RRR
Sbjct: 381 AVKLRAHFEHLGCKLVSQNKVTMATLPVPLTFPRLRQKRRR 421
>gi|449447870|ref|XP_004141689.1| PREDICTED: uncharacterized protein LOC101221697 [Cucumis sativus]
gi|449480549|ref|XP_004155927.1| PREDICTED: uncharacterized protein LOC101224839 [Cucumis sativus]
Length = 435
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 225/398 (56%), Positives = 299/398 (75%), Gaps = 10/398 (2%)
Query: 55 AKVQFIPEQPNKAPPLVGYFPSIYKPDVDHPDEEMRP-KVRVYRNMNEKKNRTGRMELVV 113
AK+Q + QP K PP+VGYFPS + P D E+ R + RVY++ KNR RM+LVV
Sbjct: 43 AKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKH----KNRPNRMQLVV 98
Query: 114 SPRDSSVDYVGTSYSGEAMAP-QFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSD 172
SP S+VD+VGT+Y GEA A Q C YA+GVLD++TQ+LKIVPIA+N IFRL+P+VRGSD
Sbjct: 99 SPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSD 158
Query: 173 VADKDA---GKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALK 229
V + ++ E+S + +AN L YGTKKS +Q++K+HAL +E+DPE++ DL +
Sbjct: 159 VTENESPSVANEELSGQDKANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKSDLDGR 218
Query: 230 MKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAG 289
MK+V +NKEALE T ++ N+P Y+A+ATTPQ+AYPLDKIILKGEW F++D++ +
Sbjct: 219 MKNVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQET 278
Query: 290 SEVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHR 349
+E IS YPSFV NRI+KL++IQD+ EK+ L IFSYITHL+K+KDQHSM +SAK H+
Sbjct: 279 AE-ISATYPSFVRNRIYKLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHK 337
Query: 350 IPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFK 409
IP +L QKF + F AES+RLS DKI+LLIS+VLVL+L AD+F ++P DIAKDLR S +
Sbjct: 338 IPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYD 397
Query: 410 LRDHFEKLGCKLLREKNMLYATLPVPLQFPKAIQRRRR 447
LR HF+ LGCK +R+ N+ ATLP+PLQFP+ Q+RRR
Sbjct: 398 LRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR 435
>gi|297743053|emb|CBI35920.3| unnamed protein product [Vitis vinifera]
Length = 391
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 235/397 (59%), Positives = 300/397 (75%), Gaps = 12/397 (3%)
Query: 57 VQFIPEQPNKAPPLVGYFPSIYKPD--VDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVS 114
++ + E P K PPLVGYFPS + P DH + + P V+V+RN K R R++LVVS
Sbjct: 1 MEVVHEHPEKIPPLVGYFPSGFDPHKPQDH-ESDPPPAVKVFRN----KARANRLQLVVS 55
Query: 115 PRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVA 174
P DS V++VGTSYSGEA + Q C YA+GVLD+ TQTLKIVPIA+NKIFRLEPRV GSD +
Sbjct: 56 PNDSKVNFVGTSYSGEAASAQVCTYALGVLDKETQTLKIVPIASNKIFRLEPRVGGSDAS 115
Query: 175 DKDAG---KGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMK 231
+ KGE +AE +A L YGTKKS+ Q+KK+ ALN+++DP SQKDL K+K
Sbjct: 116 VDEPSSLLKGEQTAEEKAGRMRDLTNLYGTKKSITQAKKLQALNQKDDPRSQKDLDRKLK 175
Query: 232 SVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSE 291
V INKEALEST++ + N+PPYD ATTPQ+AY LDKII KGEWD++ DI + + AG E
Sbjct: 176 EVVINKEALESTSAHSARNIPPYDDTATTPQEAYRLDKIIFKGEWDYLLDILDLLQAGVE 235
Query: 292 VISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIP 351
V S AY SFVCNRI KL+E++D+ EK TLA IFSYI HL+K+KD++SMD +SAK H+IP
Sbjct: 236 VESSAYSSFVCNRIQKLKELEDEGEKTTLACIFSYINHLLKYKDRNSMD-ASSAKHHKIP 294
Query: 352 KILHQKFLTSFS-DAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKL 410
IL+QKF + F+ D++S+RL+++K LLISYVLVLTL+AD+FRT+P+DIA+DLRMS KL
Sbjct: 295 GILNQKFSSMFALDSDSRRLTEEKKDLLISYVLVLTLYADEFRTDPSDIARDLRMSAVKL 354
Query: 411 RDHFEKLGCKLLREKNMLYATLPVPLQFPKAIQRRRR 447
R HFE LGCKL+ + + ATLPVPL FP+ Q+RRR
Sbjct: 355 RAHFEHLGCKLVSQNKVTMATLPVPLTFPRLRQKRRR 391
>gi|255560707|ref|XP_002521367.1| DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus
communis]
gi|223539445|gb|EEF41035.1| DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus
communis]
Length = 481
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 224/424 (52%), Positives = 292/424 (68%), Gaps = 30/424 (7%)
Query: 53 VKAKVQFIPEQPNKAPPLVGYFPSIYKPDV--------DHPDEE------MRPKVRVYRN 98
+ K++ I +Q +K PP+VGYFPS YKP D +EE +P V+ YRN
Sbjct: 58 LNVKIEVIYDQTDKTPPIVGYFPSGYKPSKHNESNNLHDTSNEENATSSLSQPSVKFYRN 117
Query: 99 M------------NEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDR 146
NEK + RMELVVSP S+VD+VG SY GEA A Q C YA+GVLD+
Sbjct: 118 AQRTKIEKSSNERNEKWRSSERMELVVSPNGSNVDFVGKSYKGEATAAQLCTYALGVLDK 177
Query: 147 STQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGE---ISAEVQANMKAMLDTRYGTKK 203
T+TLKI+PIA NKIFRLEP+++G D +DK+ E +S E A K L YGTKK
Sbjct: 178 KTKTLKIMPIAGNKIFRLEPKIQGVDASDKEPSVLENEDLSKENMAVRKKTLTDTYGTKK 237
Query: 204 SLRQSKKMHALNKENDPESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQ 263
S+ Q K+M + + ++PES+KDL K+ +V +NK ALE T++ N+PP++ +ATTPQ+
Sbjct: 238 SITQGKRMEIMMQGDNPESRKDLDQKIDNVVVNKAALEDTSAHVARNIPPHNTSATTPQE 297
Query: 264 AYPLDKIILKGEWDFVQDIFNHVSAGSEVISDAYPSFVCNRIHKLREIQDDVEKQTLASI 323
AYPL +IIL GEWD+++D++ + AG +AYP FV NRIHKLREIQD+VE++T + I
Sbjct: 298 AYPLGRIILTGEWDYLEDLYEILQAGEGAAINAYPVFVRNRIHKLREIQDEVERKTYSRI 357
Query: 324 FSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIHLLISYVL 383
FSYITHL+KFKD HSMDG +SAK H+ P IL QKF+ F+ ES++L +KI LLISYVL
Sbjct: 358 FSYITHLLKFKDLHSMDGVSSAKNHKFPSILRQKFMGMFT-PESRKLPVEKIDLLISYVL 416
Query: 384 VLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYATLPVPLQFPKAIQ 443
VL+L+ADDFRT+PTDIAKDLR+S +R HFE LGCK++ E + ATLPVPL+FP Q
Sbjct: 417 VLSLYADDFRTDPTDIAKDLRVSRVMVRTHFENLGCKIVCENKLSLATLPVPLKFPVQRQ 476
Query: 444 RRRR 447
RR R
Sbjct: 477 RRAR 480
>gi|356556228|ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like
[Glycine max]
Length = 424
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 206/385 (53%), Positives = 272/385 (70%), Gaps = 7/385 (1%)
Query: 63 QPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDY 122
PNK PP+VGYFPS + P +H +V +R+M + R+ELVV P SSV++
Sbjct: 46 HPNKTPPVVGYFPSGFDPVKNHGGGPSNFQVYRHRSMPK------RLELVVRPPRSSVEF 99
Query: 123 VGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGE 182
VGTSY+GEA A YA+GVLD+ TLK+VPIA NKIFRLEP+V+G + +
Sbjct: 100 VGTSYAGEAAARHRAKYALGVLDKEAGTLKVVPIAGNKIFRLEPKVKGVGAFENEPANST 159
Query: 183 ISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVKINKEALES 242
+ Q A + +GTKK + ++KK AL ++ DP+SQ++L +KMKSV +NK+ALES
Sbjct: 160 LEEMTQQQKFAETTSIWGTKKDIEKAKKKLALRQDEDPDSQRNLDVKMKSVTVNKKALES 219
Query: 243 TTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDAYPSFVC 302
T S N+PPYDA+ATTPQ+AY LDKIILKGEWD+++DI+N++ G E AYP+FV
Sbjct: 220 TESHVSRNIPPYDASATTPQEAYILDKIILKGEWDYLEDIYNNLQRGEEADFSAYPTFVR 279
Query: 303 NRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSF 362
NRI +LR+I+D+ EK+ L+ IFSYI HL+KFKDQHS D SAK H+IP IL KF F
Sbjct: 280 NRIERLRKIKDESEKKQLSCIFSYINHLIKFKDQHSFD-VLSAKGHKIPNILRHKFSNMF 338
Query: 363 SDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLL 422
+ +ESKRL +KI LLI YVLVLTL +D+FRT+ TDIAKDL M+ +R +E LGCK+
Sbjct: 339 AVSESKRLPPEKISLLICYVLVLTLFSDEFRTDYTDIAKDLSMNILPVRQLYEHLGCKIS 398
Query: 423 REKNMLYATLPVPLQFPKAIQRRRR 447
R+KN+ YATLPVPL+FP+ QR+R+
Sbjct: 399 RQKNIFYATLPVPLKFPELRQRKRK 423
>gi|297834232|ref|XP_002884998.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297330838|gb|EFH61257.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 443
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 201/447 (44%), Positives = 299/447 (66%), Gaps = 14/447 (3%)
Query: 6 ETRSKKEHESQQEQETEGPKKKNKKRKKDK--ANTTIDEQPEPELEPERVKAKVQFIPEQ 63
E K EH +++E+E P++ KK++K K A+ T D+ E + R+ KV + E+
Sbjct: 2 EGEDKNEHRNEEEEEFNTPQQLEKKQRKGKEIASETEDQNEEDK----RITLKVTQVSER 57
Query: 64 PNKAPPLVGYFPSIYKPDVDHPDEEMR----PKVRVYRNMNEKKNRTGRMELVVSPRDSS 119
P++ P+V YF + Y P P+ R PKV VY++ ++ K R +++VVSP +
Sbjct: 58 PDRISPIVAYFSTGYDPCKVDPETGKRVHETPKVTVYKHKDDSKKR---IQVVVSPPGAR 114
Query: 120 VDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAG 179
V++VGT+Y+GE A Q Y VGV +R +TL+I+P+A NKI RLEP+V+ + +++A
Sbjct: 115 VEFVGTNYTGEQAAMQTNTYRVGVFNREAKTLRILPVAHNKIIRLEPKVKAQETVEEEAS 174
Query: 180 KGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVKINKEA 239
+ E+ D RY TKK++ + KK ALN +D E+QK L K+ + +N A
Sbjct: 175 GSAVVEELGKLTTGERD-RYNTKKAVTRDKKKRALNMGDDAETQKFLDGKLGELDVNTAA 233
Query: 240 LESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDAYPS 299
LEST+S N+PPYDA ATT ++AYPL+KII KGEW F++DI+ + G+E +DAYP
Sbjct: 234 LESTSSTVARNIPPYDAAATTAKEAYPLEKIIEKGEWSFLEDIYWLLEQGTEAATDAYPV 293
Query: 300 FVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFL 359
FV NR+ KLR+I+DD++KQT++ + +THLVKFKD++SM+G SAK H++P I +KF
Sbjct: 294 FVRNRLFKLRDIKDDMKKQTVSGALTLLTHLVKFKDRNSMNGFDSAKNHKMPDIFRRKFQ 353
Query: 360 TSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGC 419
+ F D+ES+R+ DK +LLISYVLVL+LH D+F+T+P DIAKDLR+S +LR HF++LGC
Sbjct: 354 SMFKDSESERIPVDKANLLISYVLVLSLHVDNFKTDPEDIAKDLRISTVELRKHFQQLGC 413
Query: 420 KLLREKNMLYATLPVPLQFPKAIQRRR 446
K +++ + ATLP PL FP+ +RR+
Sbjct: 414 KFVKQNSTWVATLPTPLNFPEVNRRRK 440
>gi|388506278|gb|AFK41205.1| unknown [Lotus japonicus]
Length = 347
Score = 364 bits (934), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 180/349 (51%), Positives = 247/349 (70%), Gaps = 11/349 (3%)
Query: 106 TGRMELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLE 165
T R++LVVSP + V++VGTSY+GEA A YA+GV D+ QTLK+VPIAANKIFRLE
Sbjct: 2 TKRLQLVVSPAGAPVEFVGTSYTGEAAAGHRAMYALGVFDKKAQTLKVVPIAANKIFRLE 61
Query: 166 PRVRGSDVADKDAGKGEI-------SAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKEN 218
P+V+ + DK+ + SA Q AML GTK+ + ++++ AL + +
Sbjct: 62 PKVKALEALDKEPAISTVEELTPADSALKQRQTTAML----GTKRDIERNRRKDALRQGD 117
Query: 219 DPESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDF 278
DPESQK+L K+K V +NKEALEST N+PPYDA+ATTPQ+AY LDKII K EW++
Sbjct: 118 DPESQKNLGEKVKDVAVNKEALESTEVHVSRNLPPYDASATTPQEAYILDKIIPKKEWEY 177
Query: 279 VQDIFNHVSAGSEVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHS 338
++DI++ + G E AYP+F+ NRI +L+ I+D+ EK+ ++ IFSY+ HL+KFKDQ +
Sbjct: 178 LEDIYDMLQLGEEADFSAYPTFISNRIARLKGIKDEAEKKKMSCIFSYLNHLIKFKDQRT 237
Query: 339 MDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTD 398
M G +SAK H+IP IL KF + F ES+RL +D+++LLI YVLVLTL +D+FRT+ TD
Sbjct: 238 MQGVSSAKSHKIPPILRYKFSSMFGATESRRLPNDELNLLICYVLVLTLFSDEFRTDYTD 297
Query: 399 IAKDLRMSEFKLRDHFEKLGCKLLREKNMLYATLPVPLQFPKAIQRRRR 447
I+KDLRMS +R H+ LGCK L + + YATLPVPL+FP + QR+R+
Sbjct: 298 ISKDLRMSVLLVRQHYSDLGCKFLSQNKISYATLPVPLKFPDSKQRKRK 346
>gi|15231416|ref|NP_188010.1| DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana]
gi|13430584|gb|AAK25914.1|AF360204_1 unknown protein [Arabidopsis thaliana]
gi|11994365|dbj|BAB02324.1| unnamed protein product [Arabidopsis thaliana]
gi|14532856|gb|AAK64110.1| unknown protein [Arabidopsis thaliana]
gi|332641922|gb|AEE75443.1| DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 442
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 183/400 (45%), Positives = 267/400 (66%), Gaps = 8/400 (2%)
Query: 51 ERVKAKVQFIPEQPNKAPPLVGYFPSIYKPDVDHPDEEMR----PKVRVYRNMNEKKNRT 106
+RV KV + E+P++ P+V YF + Y P P R PKV VY++ ++ K R
Sbjct: 44 KRVTLKVTQVAERPDRISPIVAYFSTGYDPCKVDPKTGKRVHETPKVTVYKHKDDSKKR- 102
Query: 107 GRMELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEP 166
+++VVSP + V++VGT+Y+GE A Q Y VGV +R +TL+I+P+A NKI RLEP
Sbjct: 103 --IQVVVSPPGARVEFVGTNYTGEQAAMQTNTYRVGVFNREAKTLRILPVAHNKIIRLEP 160
Query: 167 RVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDL 226
RV+ + +++A + E++ +K RY TKK++ + KK AL +D +QK L
Sbjct: 161 RVKAQETNEEEASGSAVVKELE-ELKTGERDRYNTKKAVTRDKKKRALYMGDDAATQKVL 219
Query: 227 ALKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHV 286
K+ + +N ALE T+S N+PPY+ ATT +AYPL+KII KG+W F++DI+ +
Sbjct: 220 DGKLSELGVNTAALEGTSSTVARNIPPYNTAATTANEAYPLEKIIEKGDWSFLEDIYWLL 279
Query: 287 SAGSEVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAK 346
+E ++AYP FV NR+++LR+I+DD++KQT+ + +THLVKFKD++SM+G SAK
Sbjct: 280 QQETEAATEAYPVFVRNRLYRLRDIKDDMKKQTVCGAATLLTHLVKFKDRNSMNGYDSAK 339
Query: 347 QHRIPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMS 406
H++P I QKF + F D+ES R+ DKI+LLISYVLVL+LH D+F T+P DIAKDLR+S
Sbjct: 340 DHKMPDIFRQKFNSMFKDSESDRIPVDKINLLISYVLVLSLHVDNFMTDPEDIAKDLRIS 399
Query: 407 EFKLRDHFEKLGCKLLREKNMLYATLPVPLQFPKAIQRRR 446
+LR HF +LGCK L++ + ATLP PL FP+ +RRR
Sbjct: 400 TVELRKHFLQLGCKFLKQNSTTVATLPTPLNFPEVNRRRR 439
>gi|357511101|ref|XP_003625839.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
gi|355500854|gb|AES82057.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
Length = 412
Score = 354 bits (908), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 191/411 (46%), Positives = 263/411 (63%), Gaps = 13/411 (3%)
Query: 40 IDEQPEPELEPERVKAKVQFIPEQPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNM 99
+D +P PE E V+AK++ + P K PP VGYF S + P V+VYRN
Sbjct: 1 MDTEPPPEPVHETVQAKIEVVSSNPTKMPPFVGYFTSGFDPVKSSSGST---DVQVYRN- 56
Query: 100 NEKKNRTGRMELVVSPRDSSVDYVGTSYSGEA--MAPQFCHYAVGVLDRSTQTLKIVPIA 157
K R ELVVSP S V++VGTSY GEA +A Y +GV D+ +QTLKIVPI
Sbjct: 57 ---KVMHKRTELVVSPAGSLVEFVGTSYEGEAAAVARNPATYMLGVFDKESQTLKIVPIG 113
Query: 158 ANKIFRLEPRVRGSDVADKDAGKG----EISAEVQANMKAMLDTRYGTKKSLRQSKKMHA 213
NKIFRLEPRV+G + + E++AE K D GTKKS + +
Sbjct: 114 GNKIFRLEPRVKGVEYKEPTPTPTKMVEELTAEQWTEKKRKADAALGTKKSKQMLIWLDE 173
Query: 214 LNKENDPESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILK 273
+ + +PE++K+L KMK+V++ + AL +T + ++PPY+++ATTPQ+AY LDKIIL
Sbjct: 174 MTADEEPEAKKNLDEKMKNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYVLDKIILA 233
Query: 274 GEWDFVQDIFNHVSAGSEVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKF 333
EW+++QDI+ + YPSF+ NRI++L++I+DD EK+ L+ I +I +LVKF
Sbjct: 234 DEWNYLQDIYYSLQKEEAANFSLYPSFIRNRINRLKKIEDDSEKKKLSCILLFINYLVKF 293
Query: 334 KDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFR 393
KDQHSMDG +S+K ++P LH +F F +ES+RL +K++LLISYVLVLTL +DDFR
Sbjct: 294 KDQHSMDGISSSKFEKLPYTLHHRFTAMFDVSESRRLPPEKLNLLISYVLVLTLFSDDFR 353
Query: 394 TNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYATLPVPLQFPKAIQR 444
T+ DIAKDLRM+ LR FE LGCKL+ + + YATLP+PL FP+ QR
Sbjct: 354 TDYRDIAKDLRMTTLTLRPIFEHLGCKLISSQKVSYATLPIPLTFPQIRQR 404
>gi|357449561|ref|XP_003595057.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
gi|217073572|gb|ACJ85146.1| unknown [Medicago truncatula]
gi|355484105|gb|AES65308.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
gi|388522465|gb|AFK49294.1| unknown [Medicago truncatula]
Length = 428
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 187/393 (47%), Positives = 260/393 (66%), Gaps = 18/393 (4%)
Query: 54 KAKVQFIPEQPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVV 113
+AK++ + P+K PP +GYF S + P + V+VYRN K R ELVV
Sbjct: 32 QAKIEVVSSDPSKMPPFIGYFTSGFDPVKSSSGTD----VQVYRN----KVMHKRTELVV 83
Query: 114 SPRDSSVDYVGTSYSGEAMAPQF--CHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGS 171
SP SSV++VGTSY GEA+A Y +GV D+ +QTLKIVPI NKIFRLEPRV+G
Sbjct: 84 SPAGSSVEFVGTSYEGEAVAAARNPATYMLGVFDKESQTLKIVPIGGNKIFRLEPRVKGV 143
Query: 172 DVADKDAGK----GEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLA 227
+ + E++AE A K D GTK+S + ++ + + +PE++K+L
Sbjct: 144 EYKEPPPTPIKMVEEMTAEQLAEKKRNTDAALGTKRSNKMHSRLADMRGDEEPEAKKNLD 203
Query: 228 LKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVS 287
KMK+V++ + AL +T + ++PPY+++ATTPQ+AY LDKIIL EW+++QDI+ S
Sbjct: 204 EKMKNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYVLDKIILAEEWNYLQDIY--YS 261
Query: 288 AGSEVISD--AYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASA 345
EV +D YPSF+ NRI++L++I+DD EK+ + I S+I +LVKFKDQHSMDG +S+
Sbjct: 262 LQKEVAADFSLYPSFIRNRINRLKKIEDDSEKKKHSCILSFINYLVKFKDQHSMDGISSS 321
Query: 346 KQHRIPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRM 405
K ++P LH +F T F ES+RL +K++LLISYVLVLTL +DDFRT+ DIAKDLRM
Sbjct: 322 KFEKLPYTLHHRFTTMFDVTESRRLPPEKMNLLISYVLVLTLFSDDFRTDYRDIAKDLRM 381
Query: 406 SEFKLRDHFEKLGCKLLREKNMLYATLPVPLQF 438
+ LR FE LGCKL+ + + YATLP+PL F
Sbjct: 382 TTLTLRPIFEHLGCKLISSQKVSYATLPIPLTF 414
>gi|357449563|ref|XP_003595058.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
gi|355484106|gb|AES65309.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
Length = 411
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 187/393 (47%), Positives = 260/393 (66%), Gaps = 18/393 (4%)
Query: 54 KAKVQFIPEQPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVV 113
+AK++ + P+K PP +GYF S + P + V+VYRN K R ELVV
Sbjct: 15 QAKIEVVSSDPSKMPPFIGYFTSGFDPVKSSSGTD----VQVYRN----KVMHKRTELVV 66
Query: 114 SPRDSSVDYVGTSYSGEAMAPQF--CHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGS 171
SP SSV++VGTSY GEA+A Y +GV D+ +QTLKIVPI NKIFRLEPRV+G
Sbjct: 67 SPAGSSVEFVGTSYEGEAVAAARNPATYMLGVFDKESQTLKIVPIGGNKIFRLEPRVKGV 126
Query: 172 DVADKDAGK----GEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLA 227
+ + E++AE A K D GTK+S + ++ + + +PE++K+L
Sbjct: 127 EYKEPPPTPIKMVEEMTAEQLAEKKRNTDAALGTKRSNKMHSRLADMRGDEEPEAKKNLD 186
Query: 228 LKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVS 287
KMK+V++ + AL +T + ++PPY+++ATTPQ+AY LDKIIL EW+++QDI+ S
Sbjct: 187 EKMKNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYVLDKIILAEEWNYLQDIY--YS 244
Query: 288 AGSEVISD--AYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASA 345
EV +D YPSF+ NRI++L++I+DD EK+ + I S+I +LVKFKDQHSMDG +S+
Sbjct: 245 LQKEVAADFSLYPSFIRNRINRLKKIEDDSEKKKHSCILSFINYLVKFKDQHSMDGISSS 304
Query: 346 KQHRIPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRM 405
K ++P LH +F T F ES+RL +K++LLISYVLVLTL +DDFRT+ DIAKDLRM
Sbjct: 305 KFEKLPYTLHHRFTTMFDVTESRRLPPEKMNLLISYVLVLTLFSDDFRTDYRDIAKDLRM 364
Query: 406 SEFKLRDHFEKLGCKLLREKNMLYATLPVPLQF 438
+ LR FE LGCKL+ + + YATLP+PL F
Sbjct: 365 TTLTLRPIFEHLGCKLISSQKVSYATLPIPLTF 397
>gi|357449487|ref|XP_003595020.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
gi|355484068|gb|AES65271.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
Length = 419
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 185/400 (46%), Positives = 257/400 (64%), Gaps = 21/400 (5%)
Query: 45 EPELEPERVKAKVQFIPEQPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKN 104
EP EP V+AK++ + P+K PP +GYF S + P + V+VYRN K
Sbjct: 21 EPVHEP--VQAKIEVVSSDPSKMPPFIGYFTSGFDPVKSSSGTD----VQVYRN----KV 70
Query: 105 RTGRMELVVSPRDSSVDYVGTSYSGEAMAPQF--CHYAVGVLDRSTQTLKIVPIAANKIF 162
R ELVVSP SSV++VGTSY GEA+A Y +GV D+ +QTLKIVPI +
Sbjct: 71 MHKRTELVVSPAGSSVEFVGTSYEGEAVAAARNPATYMLGVFDKESQTLKIVPIGD---W 127
Query: 163 RLEPRVRGSDVADKDAGKG--EISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDP 220
E +V + K E++AE A K D GTKKS + K+ + ++ +P
Sbjct: 128 NQELKVWNIRMPPPTPIKMVEEMTAEQLAEKKRNTDVALGTKKSKKMHDKLADMKRDEEP 187
Query: 221 ESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQ 280
E++K+L KMK+V++ + AL +T + ++PPY+++ATTPQ+AY LDKIIL EW+++Q
Sbjct: 188 EAKKNLDEKMKNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYVLDKIILAEEWNYLQ 247
Query: 281 DIFNHVSAGSEVISD--AYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHS 338
DI+ S EV +D YPSF+ NRI++L++I+DD EK+ L+ I S+I +LVKFKDQHS
Sbjct: 248 DIY--YSLQKEVAADFSLYPSFIRNRINRLKKIEDDSEKKKLSCILSFINYLVKFKDQHS 305
Query: 339 MDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTD 398
MDG +S+K ++P L+ +F T F ES+RL +K++LLISYVLVLTL +DDFRT+ D
Sbjct: 306 MDGISSSKFEKLPYTLYHRFTTMFDVTESRRLPPEKMNLLISYVLVLTLFSDDFRTDYRD 365
Query: 399 IAKDLRMSEFKLRDHFEKLGCKLLREKNMLYATLPVPLQF 438
I KDLRMS LR FE LGCK + + + YATLP+PL F
Sbjct: 366 IVKDLRMSTLTLRPIFEHLGCKFISSQKVSYATLPIPLTF 405
>gi|326504286|dbj|BAJ90975.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 431
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 164/400 (41%), Positives = 227/400 (56%), Gaps = 33/400 (8%)
Query: 64 PNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYV 123
P A P+VGYFP+ Y P + D P+ R++R+ EK + R+ELVV D+V
Sbjct: 47 PGAAAPVVGYFPTGYDP-LAAADP---PRARLFRH--EKHHN--RVELVVDAPGGGPDFV 98
Query: 124 GTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEI 183
G SY+GEA APQ C YA+GVLD++T TLKIVPIA+NKI RLEP A E
Sbjct: 99 GRSYAGEAAAPQLCGYALGVLDKATGTLKIVPIASNKILRLEPHFEVQQPAHSQQSAAEA 158
Query: 184 SAEVQAN--MKAMLDTRYGTKKSLRQSKKMHALNKE-NDPESQKDLALKMKSVKINKEAL 240
+ V + L YGTKK + K +L ++ NDP + DL L +A
Sbjct: 159 CSSVADTELNRQDLTQAYGTKKDKDKDNKWKSLKEQRNDPSAYLDLDLGESK---TADAT 215
Query: 241 ESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDAYPSF 300
+S S V N+PPYD A T ++AY D+II K + DI H +G E Y SF
Sbjct: 216 DSQASMEVRNIPPYDPAADTSEKAYLFDEIIPKNIRPHLLDIVGHFESG-EFGLKGYGSF 274
Query: 301 VCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHR----------- 349
V NR++KL E+Q + +++ LA I SYITHL+ ++S + +KQ R
Sbjct: 275 VSNRVNKLHELQGE-DQERLAWILSYITHLLSLLARNS----SMSKQKRKEKDQTIRGPM 329
Query: 350 IPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFK 409
IP+ +H+K L F++ S LS +K LLI+Y+LVLTL ADDFR+ PTDI DL+M+
Sbjct: 330 IPQAVHRKLLLMFTEPGSSSLSTEKYELLINYILVLTLFADDFRSEPTDICADLKMNRQM 389
Query: 410 LRDHFEKLGCKLLREKNM--LYATLPVPLQFPKAIQRRRR 447
L+ ++++LGCK + + TLP PL+FP+ + RRRR
Sbjct: 390 LKPYYDQLGCKSVSTGAFKPFFMTLPAPLKFPQQVTRRRR 429
>gi|326494566|dbj|BAJ94402.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326529171|dbj|BAK00979.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 433
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 164/400 (41%), Positives = 227/400 (56%), Gaps = 33/400 (8%)
Query: 64 PNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYV 123
P A P+VGYFP+ Y P + D P+ R++R+ EK + R+ELVV D+V
Sbjct: 49 PGAAAPVVGYFPTGYDP-LAAADP---PRARLFRH--EKHHN--RVELVVDAPGGGPDFV 100
Query: 124 GTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEI 183
G SY+GEA APQ C YA+GVLD++T TLKIVPIA+NKI RLEP A E
Sbjct: 101 GRSYAGEAAAPQLCGYALGVLDKATGTLKIVPIASNKILRLEPHFEVQQPAHSQQSAAEA 160
Query: 184 SAEVQAN--MKAMLDTRYGTKKSLRQSKKMHALNKE-NDPESQKDLALKMKSVKINKEAL 240
+ V + L YGTKK + K +L ++ NDP + DL L +A
Sbjct: 161 CSSVADTELNRQDLTQAYGTKKDKDKDNKWKSLKEQRNDPSAYLDLDLGESK---TADAT 217
Query: 241 ESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDAYPSF 300
+S S V N+PPYD A T ++AY D+II K + DI H +G E Y SF
Sbjct: 218 DSQASMEVRNIPPYDPAADTSEKAYLFDEIIPKNIRPHLLDIVGHFESG-EFGLKGYGSF 276
Query: 301 VCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHR----------- 349
V NR++KL E+Q + +++ LA I SYITHL+ ++S + +KQ R
Sbjct: 277 VSNRVNKLHELQGE-DQERLAWILSYITHLLSLLARNS----SMSKQKRKEKDQTIRGPM 331
Query: 350 IPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFK 409
IP+ +H+K L F++ S LS +K LLI+Y+LVLTL ADDFR+ PTDI DL+M+
Sbjct: 332 IPQAVHRKLLLMFTEPGSSSLSTEKYELLINYILVLTLFADDFRSEPTDICADLKMNRQM 391
Query: 410 LRDHFEKLGCKLLREKNM--LYATLPVPLQFPKAIQRRRR 447
L+ ++++LGCK + + TLP PL+FP+ + RRRR
Sbjct: 392 LKPYYDQLGCKSVSTGAFKPFFMTLPAPLKFPQQVTRRRR 431
>gi|148908031|gb|ABR17135.1| unknown [Picea sitchensis]
Length = 443
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 162/430 (37%), Positives = 235/430 (54%), Gaps = 42/430 (9%)
Query: 55 AKVQFIPEQPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVS 114
+ ++I Q P VGYF S Y P + D +V VY+N +K +T +MELV
Sbjct: 18 VQTEYIKPQSGFGCPFVGYFSSGYDP-LKKGDASSSLEVGVYQNT--RKFKTKQMELVAR 74
Query: 115 PRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVA 174
P++++VD+VGT+YSGE Q C+Y +GV D+ T TLK+VPI+ +IFR+E RV+G +
Sbjct: 75 PKEANVDFVGTNYSGENSLWQPCNYLMGVFDKETSTLKLVPISGGRIFRMEARVQGMEYM 134
Query: 175 DKDAGKGEISAEVQANMK---AMLDTRYGTKKSLRQSK-------KMHALNKENDPESQK 224
A + N + +L +GT KS ++K K AL ++
Sbjct: 135 SAVAEEENAEELTAENRQRQYQLLTATFGTHKSRLEAKRRDKSRLKEEALGDQSGIGKLF 194
Query: 225 DLALKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFN 284
+ A K +V +KEAL ++ V N+PPYDA+AT P++ Y L+ IILK EWD +I
Sbjct: 195 EEAAKNTTVLTSKEALARANANIVRNIPPYDASATKPEKVYLLENIILKEEWDQQPNIGE 254
Query: 285 HVSAGS------EVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKD--- 335
++AG+ E YP FV +RI KL + + LA I SYITHL+ FK
Sbjct: 255 LIAAGTNARAAAEFQRSDYPLFVRSRIDKLGS-ESGKGRDRLAHILSYITHLLNFKAMPL 313
Query: 336 -------------QHSMDGGASAK---QHRIPKILHQKFLTSFSDAESKRLSDDKIHLLI 379
+H D +A+ +IP + KFL F+D++ S +K LLI
Sbjct: 314 HAIKRLLKARTTLEHDTDDKETARLMESSKIPGVTLAKFLKLFTDSKESTRSREKTDLLI 373
Query: 380 SYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYATLPVPLQFP 439
SY+LVLTL AD F T+P+DIA DL+M ++ H+++LGCK +N L +LP+PL FP
Sbjct: 374 SYILVLTLMADGFETHPSDIAADLKMIVPDVKSHYQELGCKARGTQNNLKISLPIPLTFP 433
Query: 440 ---KAIQRRR 446
+A+QRRR
Sbjct: 434 TMNEAVQRRR 443
>gi|124359499|gb|ABN05937.1| hypothetical protein MtrDRAFT_AC149130g57v2 [Medicago truncatula]
Length = 243
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 118/231 (51%), Positives = 169/231 (73%), Gaps = 4/231 (1%)
Query: 210 KMHALNKENDPESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDK 269
K+ + ++ +PE++K+L KMK+V++ + AL +T + ++PPY+++ATTPQ+AY LDK
Sbjct: 1 KLADMKRDEEPEAKKNLDEKMKNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYVLDK 60
Query: 270 IILKGEWDFVQDIFNHVSAGSEVISD--AYPSFVCNRIHKLREIQDDVEKQTLASIFSYI 327
IIL EW+++QDI+ S EV +D YPSF+ NRI++L++I+DD EK+ L+ I S+I
Sbjct: 61 IILAEEWNYLQDIY--YSLQKEVAADFSLYPSFIRNRINRLKKIEDDSEKKKLSCILSFI 118
Query: 328 THLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTL 387
+LVKFKDQHSMDG +S+K ++P L+ +F T F ES+RL +K++LLISYVLVLTL
Sbjct: 119 NYLVKFKDQHSMDGISSSKFEKLPYTLYHRFTTMFDVTESRRLPPEKMNLLISYVLVLTL 178
Query: 388 HADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYATLPVPLQF 438
+DDFRT+ DI KDLRMS LR FE LGCK + + + YATLP+PL F
Sbjct: 179 FSDDFRTDYRDIVKDLRMSTLTLRPIFEHLGCKFISSQKVSYATLPIPLTF 229
>gi|357156152|ref|XP_003577359.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like
[Brachypodium distachyon]
Length = 472
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 149/389 (38%), Positives = 224/389 (57%), Gaps = 36/389 (9%)
Query: 69 PLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYS 128
P+VGYFP+ Y P P+ R++R+ + + R++LVVS +D+VG SY+
Sbjct: 91 PVVGYFPTGYDPLA----AAEPPRARLFRH----EKHSNRVDLVVSAPGGGLDFVGRSYA 142
Query: 129 GEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVR-----GSDVADKDAGKGEI 183
GE AP C YA+GVLD+++ TLK+VPIAANKI RLEP S+ + +AG
Sbjct: 143 GETAAPHLCGYALGVLDKASGTLKVVPIAANKILRLEPHFEEQKPAHSEQSAAEAGSSVA 202
Query: 184 SAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKE-NDPESQKDLALKMKSVKINKEALES 242
+ EV+ + L YGT+K + K +L +E NDP++ L L++ K +A +S
Sbjct: 203 NTEVK---RQQLTEAYGTQKDKVKDNKWKSLKEETNDPDAY--LGLELGDSKTTADATDS 257
Query: 243 TTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDAYPSFVC 302
S TV N+PPYD A T ++AY D+II K + +I H +G E+ S Y SFV
Sbjct: 258 QASVTVRNIPPYDPAADTSEKAYLFDEIIPKNIRPHLLEIVGHFESG-EISSKGYGSFVS 316
Query: 303 NRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHR---------IPKI 353
NR++KL+ ++ + K+ LA I SYIT+L+ ++S A +K+ R IP
Sbjct: 317 NRVNKLQHLKGE-GKERLAWILSYITYLLSLLARNS----AMSKRDRKENLSHGPTIPPN 371
Query: 354 LHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDH 413
+H+ L F++ S LS +K LLI+Y+LVLTL+AD+F ++P DI +DL+M+ L+ +
Sbjct: 372 VHRNLLLMFTEPGSSALSTEKHELLINYILVLTLYADNFTSSPADICEDLKMTREMLKPY 431
Query: 414 FEKLGCKLLREKNM--LYATLPVPLQFPK 440
+ +LGCK TLP PL+FP+
Sbjct: 432 YLQLGCKYGSAGAFKPSVITLPAPLKFPQ 460
>gi|125542306|gb|EAY88445.1| hypothetical protein OsI_09911 [Oryza sativa Indica Group]
Length = 438
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 153/400 (38%), Positives = 229/400 (57%), Gaps = 41/400 (10%)
Query: 73 YFPSIYKPDVDHPDEEMR--PKVRVYRNMNEKKNRTGRMELVVSPRDSSV---DYVGTSY 127
YFP+ Y P + R P+ R++R+ R+ELVV D+VG SY
Sbjct: 52 YFPTGYDPLAAGGGRKGREAPRTRLFRHTKHPS----RIELVVGAATGGGGGPDFVGRSY 107
Query: 128 SGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADK--DAGKGE-IS 184
+GEA+ PQ YA+GVLD+++ TLK+VPIAANKI RLEP + +A GE +S
Sbjct: 108 AGEAVLPQLTGYALGVLDKASGTLKVVPIAANKILRLEPHLEVQKLAHSQHSGAVGEAVS 167
Query: 185 AEVQANMKAMLDTR-YGTKKSLRQSKKMHALNKE-NDPESQKDLALKMKSVKINKEALES 242
+ A++K T+ +GT+K + K +LN++ NDP + DL L +
Sbjct: 168 SAGDADLKVQDITKAFGTQKDKAKDIKWQSLNEQRNDPSAFMDLDLGNADTSVGAN---E 224
Query: 243 TTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDAYPSFVC 302
+ TV N+PPYD A T ++AY D+II K + DI H +G E+ S Y SFV
Sbjct: 225 SQEPTVRNIPPYDPAADTSERAYLFDEIIPKSIRPHLVDIIGHFESG-EISSKGYGSFVS 283
Query: 303 NRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHR----------IPK 352
NR++KL+E+Q + +K+ LA I SYITHL+ ++S + +K+HR IP+
Sbjct: 284 NRVNKLQELQGE-DKERLAWILSYITHLLSLLARNS----SMSKRHRKENQATSGPVIPQ 338
Query: 353 ILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRD 412
+++K + F++ S LS +K LLI+Y+LVLTL+ADDFR++P DI +DL+M+ ++
Sbjct: 339 YVYRKMVLMFTEPGSSALSTEKHELLINYILVLTLYADDFRSDPKDICEDLKMTRQMIKP 398
Query: 413 HFEKLGCK-----LLREKNMLYATLPVPLQFPKAIQRRRR 447
++++LGCK + M TLP PL+FPK RR+R
Sbjct: 399 YYDQLGCKSSSAGAFKSSVM---TLPAPLKFPKEATRRKR 435
>gi|357449565|ref|XP_003595059.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
gi|355484107|gb|AES65310.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
Length = 263
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 118/224 (52%), Positives = 166/224 (74%), Gaps = 4/224 (1%)
Query: 217 ENDPESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEW 276
+ +PE++K+L KMK+V++ + AL +T + ++PPY+++ATTPQ+AY LDKIIL EW
Sbjct: 28 DEEPEAKKNLDEKMKNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYVLDKIILAEEW 87
Query: 277 DFVQDIFNHVSAGSEVISD--AYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFK 334
+++QDI+ S EV +D YPSF+ NRI++L++I+DD EK+ + I S+I +LVKFK
Sbjct: 88 NYLQDIY--YSLQKEVAADFSLYPSFIRNRINRLKKIEDDSEKKKHSCILSFINYLVKFK 145
Query: 335 DQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRT 394
DQHSMDG +S+K ++P LH +F T F ES+RL +K++LLISYVLVLTL +DDFRT
Sbjct: 146 DQHSMDGISSSKFEKLPYTLHHRFTTMFDVTESRRLPPEKMNLLISYVLVLTLFSDDFRT 205
Query: 395 NPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYATLPVPLQF 438
+ DIAKDLRM+ LR FE LGCKL+ + + YATLP+PL F
Sbjct: 206 DYRDIAKDLRMTTLTLRPIFEHLGCKLISSQKVSYATLPIPLTF 249
>gi|388510740|gb|AFK43436.1| unknown [Medicago truncatula]
Length = 263
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 118/224 (52%), Positives = 166/224 (74%), Gaps = 4/224 (1%)
Query: 217 ENDPESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEW 276
+ +PE++K+L KMK+V++ + AL +T + ++PPY+++ATTPQ+AY LDKIIL EW
Sbjct: 28 DEEPEAKKNLDEKMKNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYVLDKIILAEEW 87
Query: 277 DFVQDIFNHVSAGSEVISD--AYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFK 334
+++QDI+ S EV +D YPSF+ NRI++L++I+DD EK+ + I S+I +LVKFK
Sbjct: 88 NYLQDIY--YSLQKEVAADFSLYPSFIRNRINRLKKIEDDSEKKKHSCILSFINYLVKFK 145
Query: 335 DQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRT 394
DQHSMDG +S+K ++P LH +F T F ES+RL +K++LLISYVLVLTL +DDFRT
Sbjct: 146 DQHSMDGISSSKFEKLPYTLHHRFTTMFDVTESRRLPPEKMNLLISYVLVLTLFSDDFRT 205
Query: 395 NPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYATLPVPLQF 438
+ DIAKDLRM+ LR FE LGCKL+ + + YATLP+PL F
Sbjct: 206 DYRDIAKDLRMTTLTLRPIFEHLGCKLISSQKVSYATLPIPLTF 249
>gi|413920422|gb|AFW60354.1| A49-like RNA polymerase I associated factor family protein [Zea
mays]
Length = 458
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 145/400 (36%), Positives = 220/400 (55%), Gaps = 30/400 (7%)
Query: 67 APPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTS 126
A P+VGYFPS Y P E P +++R+ +K+ T ++LVV D+VG S
Sbjct: 68 AAPVVGYFPSGYDPLTTAAGAESAPGTQLFRH---EKHPT-WVDLVVRSPGGGHDFVGRS 123
Query: 127 YSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAE 186
Y+GEA PQ C YA+GVLD+++ TL+IVPIA KI RLEP + A + A
Sbjct: 124 YAGEAAVPQVCDYALGVLDKASGTLRIVPIAGKKILRLEPHLEVQHPAHSQHSEVASEAA 183
Query: 187 VQANMKAM----LDTRYGTKKSLRQSKKMHALNKE-NDPESQKDLALKMKSVKINKEALE 241
A + L YG K + K +L ++ NDP + +D+ L + +N +
Sbjct: 184 SAAGNDELKVQDLTMMYGAKTDRDKDNKWRSLKEQRNDPSAYEDIDLGISETNVNANDRQ 243
Query: 242 STTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDAYPSFV 301
V N+PPYD A T + AY LD+II K + + +I H +G E+ S Y SFV
Sbjct: 244 EPV--LVRNIPPYDPTADTSENAYLLDEIIPKSMREHLLEIVRHFESG-EISSKGYGSFV 300
Query: 302 CNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHR------------ 349
R+HKL+E+Q + +K+ A I SYI HL+ + +G S ++ +
Sbjct: 301 SKRVHKLKELQGE-DKKRFAWILSYIQHLLSLL---ARNGSMSNRKWKGRNENQISHGPA 356
Query: 350 IPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFK 409
P+ ++++ L F++ S + +K LL +Y+LVLTL ADDFR+NP+DI +DL+M+
Sbjct: 357 TPQAVYRRLLFMFTEPGSSVMPTEKKELLTNYILVLTLFADDFRSNPSDICEDLKMTRQN 416
Query: 410 LRDHFEKLGCKLLREKNM--LYATLPVPLQFPKAIQRRRR 447
L+ ++++LGCK + E + TLP PL+FPK + R+RR
Sbjct: 417 LKPYYDQLGCKSVTEGAFKSTFMTLPAPLKFPKEVTRKRR 456
>gi|226509692|ref|NP_001150836.1| LOC100284469 [Zea mays]
gi|195642286|gb|ACG40611.1| A49-like RNA polymerase I associated factor family protein [Zea
mays]
Length = 442
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 145/400 (36%), Positives = 219/400 (54%), Gaps = 30/400 (7%)
Query: 67 APPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTS 126
A P+VGYFPS Y P E P +++R+ +K+ T ++LVV D+VG S
Sbjct: 52 AAPVVGYFPSGYDPLTTAAGAESAPGTQLFRH---EKHPT-WVDLVVRSPGGGHDFVGRS 107
Query: 127 YSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAE 186
Y+GEA PQ C YA+GVLD+++ TL+IVPIA KI RLEP + A + A
Sbjct: 108 YAGEAAVPQVCDYALGVLDKASGTLRIVPIAGKKILRLEPHLEVQHPAHSQHSEVASEAA 167
Query: 187 VQANMKAM----LDTRYGTKKSLRQSKKMHALNKE-NDPESQKDLALKMKSVKINKEALE 241
A + L YG K + K +L ++ NDP + +D+ L + +N +
Sbjct: 168 SAAGNDELKVQDLTMMYGAKTDRDKDNKWRSLKEQRNDPSAYEDIDLGISETNVNANDRQ 227
Query: 242 STTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDAYPSFV 301
V N+PPYD A T + AY LD+II K + +I H +G E+ S Y SFV
Sbjct: 228 EPV--LVRNIPPYDPTADTSENAYLLDEIIPKSMREHFLEIVRHFESG-EISSKGYGSFV 284
Query: 302 CNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHR------------ 349
R+HKL+E+Q + +K+ A I SYI HL+ + +G S ++ +
Sbjct: 285 SKRVHKLKELQGE-DKKRFAWILSYIQHLLSLL---ARNGSMSNRKWKGRNENQISHGPA 340
Query: 350 IPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFK 409
P+ ++++ L F++ S + +K LL +Y+LVLTL ADDFR+NP+DI +DL+M+
Sbjct: 341 TPQAVYRRLLFMFTEPGSSVMPTEKKELLTNYILVLTLFADDFRSNPSDICEDLKMTRQN 400
Query: 410 LRDHFEKLGCKLLREKNM--LYATLPVPLQFPKAIQRRRR 447
L+ ++++LGCK + E + TLP PL+FPK + R+RR
Sbjct: 401 LKPYYDQLGCKSVTEGAFKSTFMTLPAPLKFPKEVTRKRR 440
>gi|222616329|gb|EEE52461.1| hypothetical protein OsJ_34625 [Oryza sativa Japonica Group]
Length = 462
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 143/363 (39%), Positives = 214/363 (58%), Gaps = 35/363 (9%)
Query: 108 RMELVVSPRDSSV---DYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRL 164
R+ELVV D+VG SY+GEA+ PQ YA+GVLD+++ TLK+VPIAANKI RL
Sbjct: 109 RIELVVGAATGGGGGPDFVGRSYAGEAVLPQLTGYALGVLDKASGTLKVVPIAANKILRL 168
Query: 165 EPRVRGSDVADK--DAGKGE-ISAEVQANMKAMLDTR-YGTKKSLRQSKKMHALNKE-ND 219
+P + +A GE +S+ A++K T+ +GT+K + K +LN++ ND
Sbjct: 169 DPHLEVQKLAHSQHSGAVGEAVSSAGDADLKVQDITKAFGTQKDKAKDIKWQSLNEQRND 228
Query: 220 PESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFV 279
P + DL L + + TV N+PPYD A T ++AY D+II K +
Sbjct: 229 PSAFMDLDLGNADTSVGAN---ESQEPTVRNIPPYDPAADTSERAYLFDEIIPKSIRPHL 285
Query: 280 QDIFNHVSAGSEVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSM 339
DI H +G E+ S Y SFV NR++KL+E+Q + +K+ LA I SYITHL+ ++S
Sbjct: 286 VDIIGHFESG-EISSKGYGSFVSNRVNKLQELQGE-DKERLAWILSYITHLLSLLARNS- 342
Query: 340 DGGASAKQHR----------IPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHA 389
+ +K+HR IP+ +++K + F++ S LS +K LLI+Y+LVLTL+A
Sbjct: 343 ---SMSKRHRKENQATSGPVIPQYVYRKMVLMFTEPGSSALSTEKHELLINYILVLTLYA 399
Query: 390 DDFRTNPTDIAKDLRMSEFKLRDHFEKLGCK-----LLREKNMLYATLPVPLQFPKAIQR 444
DDFR++P DI +DL+M+ ++ ++++LGCK + M TLP PL+FPK R
Sbjct: 400 DDFRSDPKDICEDLKMTRQMIKPYYDQLGCKSSSAGAFKSSVM---TLPAPLKFPKEATR 456
Query: 445 RRR 447
R+R
Sbjct: 457 RKR 459
>gi|115486261|ref|NP_001068274.1| Os11g0615100 [Oryza sativa Japonica Group]
gi|77551894|gb|ABA94691.1| expressed protein [Oryza sativa Japonica Group]
gi|113645496|dbj|BAF28637.1| Os11g0615100 [Oryza sativa Japonica Group]
gi|215697331|dbj|BAG91325.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 484
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 147/393 (37%), Positives = 221/393 (56%), Gaps = 38/393 (9%)
Query: 73 YFPSIYKPDVDHPDEEMR--PKVRVYRNMNEKKNRTGRMELVVSPRDSSV---DYVGTSY 127
YFP+ Y P + R P+ R++R+ R+ELVV D+VG SY
Sbjct: 109 YFPTGYDPLAAGGGRKGREAPRTRLFRHTKHPS----RIELVVGAATGGGGGPDFVGRSY 164
Query: 128 SGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEV 187
+GEA+ PQ YA+GVLD+++ TLK+VPIAANK +L V + + G+ +V
Sbjct: 165 AGEAVLPQLTGYALGVLDKASGTLKVVPIAANK--KLAHSQHSGAVGEAVSSAGDADLKV 222
Query: 188 QANMKAMLDTRYGTKKSLRQSKKMHALNKE-NDPESQKDLALKMKSVKINKEALESTTSD 246
Q KA +GT+K + K +LN++ NDP + DL L + +
Sbjct: 223 QDITKA-----FGTQKDKAKDIKWQSLNEQRNDPSAFMDLDLGNADTSVGAN---ESQEP 274
Query: 247 TVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDAYPSFVCNRIH 306
TV N+PPYD A T ++AY D+II K + DI H +G E+ S Y SFV NR++
Sbjct: 275 TVRNIPPYDPAADTSERAYLFDEIIPKSIRPHLVDIIGHFESG-EISSKGYGSFVSNRVN 333
Query: 307 KLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHR----------IPKILHQ 356
KL+E+Q + +K+ LA I SYITHL+ ++S + +K+HR IP+ +++
Sbjct: 334 KLQELQGE-DKERLAWILSYITHLLSLLARNS----SMSKRHRKENQATSGPVIPQYVYR 388
Query: 357 KFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEK 416
K + F++ S LS +K LLI+Y+LVLTL+ADDFR++P DI +DL+M+ ++ ++++
Sbjct: 389 KMVLMFTEPGSSALSTEKHELLINYILVLTLYADDFRSDPKDICEDLKMTRQMIKPYYDQ 448
Query: 417 LGCKLLREKNMLYA--TLPVPLQFPKAIQRRRR 447
LGCK + TLP PL+FPK RR+R
Sbjct: 449 LGCKSSSAGAFKSSVMTLPAPLKFPKEATRRKR 481
>gi|242069161|ref|XP_002449857.1| hypothetical protein SORBIDRAFT_05g024500 [Sorghum bicolor]
gi|241935700|gb|EES08845.1| hypothetical protein SORBIDRAFT_05g024500 [Sorghum bicolor]
Length = 445
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 135/396 (34%), Positives = 201/396 (50%), Gaps = 74/396 (18%)
Query: 67 APPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTS 126
A P+VGYFPS Y P + E P+ R++R+ +K+ T ++LVV D+VG S
Sbjct: 107 AAPVVGYFPSGYDP-LAAAGAESAPRTRLFRH---EKHPT-WVDLVVRSPGGGPDFVGRS 161
Query: 127 YSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAE 186
Y+GEA PQ C YA+GVLD+++ TL++VPI A K
Sbjct: 162 YAGEAAVPQICEYALGVLDKASGTLRVVPITAKK-------------------------- 195
Query: 187 VQANMKAMLDTRYGTKKSLRQSKKMHALNKE-NDPESQKDLALKMKSVKINKEALESTTS 245
K +LN++ NDP + +D+ L N ++S
Sbjct: 196 ---------------------DNKWRSLNEQRNDPSAFEDIDLGGSETAAN--IIDSQEP 232
Query: 246 DTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDAYPSFVCNRI 305
N+PPYD A T ++AY LD+II K + +I +H +G E S Y SFV R+
Sbjct: 233 VLTRNIPPYDPTADTSEKAYLLDEIIPKSMRQHLLEIIHHFESG-EFSSKGYGSFVSKRV 291
Query: 306 HKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHR------------IPKI 353
HKL E+Q + +K+ A I SYI HL+ + +G S Q + P
Sbjct: 292 HKLNELQGE-DKERFAWILSYIQHLLSL---FARNGSMSKSQRKWRNENQTNRGPATPPA 347
Query: 354 LHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDH 413
++ + L F++ S+ +S +K LL +Y+LVLTL ADDFR++P DI +DL+M+ KL+ +
Sbjct: 348 VYHRLLLMFTEPGSRVMSTEKNELLTNYILVLTLFADDFRSSPNDICEDLKMTYQKLKPY 407
Query: 414 FEKLGCK--LLREKNMLYATLPVPLQFPKAIQRRRR 447
+++LGCK L TLP PL+FP + R+RR
Sbjct: 408 YDQLGCKSVSLGPFKGSAVTLPAPLKFPTDVTRKRR 443
>gi|168049979|ref|XP_001777438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671169|gb|EDQ57725.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 524
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 138/464 (29%), Positives = 222/464 (47%), Gaps = 81/464 (17%)
Query: 56 KVQFIPEQPNKAPPLVGYFPSIYKP--DVDHPDEEMR-PKVRVYRNMNEKKNRTGRMELV 112
++ ++P + +A P V YFP+ + P + DH D V+VY+ +++ K + ++
Sbjct: 56 RMDYVPSKEGRARPFVAYFPTGFDPLGEADHGDAAAALSSVKVYQGVDKLKAKQTQL--- 112
Query: 113 VSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANK------------ 160
V+ VD+VG +Y+GEA A Q C YA+GV D+ TL++VP+A K
Sbjct: 113 VASTHGQVDFVGLNYAGEAAAWQPCSYALGVYDKEKGTLQLVPLAGEKGIVDVVRKVRFG 172
Query: 161 ------------------IFRLEPRVRGSDVADKDAGKGEISAEVQANMK-AMLDTRYGT 201
I R+EPRVRG D + Q+ +K ML +G+
Sbjct: 173 LVSGFMVYVGGSKTIGFDILRMEPRVRGMSYEWTDEEERVEDTREQSLLKRRMLVETFGS 232
Query: 202 KKSLRQSKKMH-------ALNKENDPESQKDLALKMKSVKINKEALESTTSDTVLNVPPY 254
+KS ++++M AL D ES A + +++ N++AL+ V NVPP+
Sbjct: 233 QKSKMRAQRMERGIVKEDALGDTEDMESLFQEAGENEALLTNEQALQQANLSVVRNVPPH 292
Query: 255 DANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDA------YPSFVCNRIHKL 308
D +A TP+ AYPLDK+I EW+ + D +A + + YP+FV +R+ ++
Sbjct: 293 DVSANTPEGAYPLDKLIPAEEWENL-DTRELKTAAKKAKDEELLRQQKYPNFVLSRLRRI 351
Query: 309 REIQDDVEKQTLASIFSYITHLVKFKD-------QHSMDGGASAKQHRIPKILHQKFLTS 361
R D A I Y+ HL F + + D G +++ IP I+ FL
Sbjct: 352 RVEGDKEGNDRRAKILVYLRHLFTFHATPHYAVRKAASDPGRFSQETGIPGIIVSSFLER 411
Query: 362 F---SDAESKRLSDDKIH------LLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRD 412
F S +S S+ +I LL SY L+L L DDF+ +P D+A +L+ + +R
Sbjct: 412 FAGESTTDSLNKSEIRIQSKQHKDLLTSYCLILGLAVDDFQADPYDMALELKQTVNTIRP 471
Query: 413 HFEKLGCKL----LREKNML----------YATLPVPLQFPKAI 442
++ +LGCK + E+ L TLPVPL+FP+ +
Sbjct: 472 YYRELGCKFEARSINERRELGDPDSAQGKWRVTLPVPLKFPEIV 515
>gi|219888901|gb|ACL54825.1| unknown [Zea mays]
Length = 261
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 150/264 (56%), Gaps = 22/264 (8%)
Query: 199 YGTKKSLRQSKKMHALNKE-NDPESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDAN 257
YG K + K +L ++ NDP + +D+ L + +N A + V N+PPYD
Sbjct: 3 YGAKTDRDKDNKWRSLKEQRNDPSAYEDIDLGISETNVN--ANDRQEPVLVRNIPPYDPT 60
Query: 258 ATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDAYPSFVCNRIHKLREIQDDVEK 317
A T + AY LD+II K + + +I H +G E+ S Y SFV R+HKL+E+Q + +K
Sbjct: 61 ADTSENAYLLDEIIPKSMREHLLEIVRHFESG-EISSKGYGSFVSKRVHKLKELQGE-DK 118
Query: 318 QTLASIFSYITHLVKFKDQHSMDGGASAKQHR------------IPKILHQKFLTSFSDA 365
+ A I SYI HL+ + +G S ++ + P+ ++++ L F++
Sbjct: 119 KRFAWILSYIQHLLSL---LARNGSMSNRKWKGRNENQISHGPATPQAVYRRLLFMFTEP 175
Query: 366 ESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREK 425
S + +K LL +Y+LVLTL ADDFR+NP+DI +DL+M+ L+ ++++LGCK + E
Sbjct: 176 GSSVMPTEKKELLTNYILVLTLFADDFRSNPSDICEDLKMTRQNLKPYYDQLGCKSVTEG 235
Query: 426 NM--LYATLPVPLQFPKAIQRRRR 447
+ TLP PL+FPK + R+RR
Sbjct: 236 AFKSTFMTLPAPLKFPKEVTRKRR 259
>gi|390596532|gb|EIN05934.1| RNA polymerase I associated factor A49-like protein [Punctularia
strigosozonata HHB-11173 SS5]
Length = 438
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 108/387 (27%), Positives = 177/387 (45%), Gaps = 55/387 (14%)
Query: 100 NEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAAN 159
E+ R +++V+ SV+Y G C Y V V D+ T T+ I P +
Sbjct: 66 GEEATEFARRDMLVAGEADSVEYASIDEPGAGAG---CRYYVAVHDKRTHTVTIRPAPLH 122
Query: 160 KIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKEN- 218
+ R ++ A K A G +AE A A+ +T +GTKK++ +M A +
Sbjct: 123 IMQRTVKALK----ALKPAPVG--AAERLAARNALQNT-FGTKKAV---TRMRAQERNRV 172
Query: 219 DPESQKDLALKMKS-VKINKEALEST-----TSDTVLNVPPYDANATTPQQAYPLDKIIL 272
D ++ +A ++S V+ N EAL + +D +PPYDA ATTP + Y L I+
Sbjct: 173 DVDAMGAVAGVLQSTVEKNTEALPTKDEAQELADASRLIPPYDATATTPSEIYKLYAIVP 232
Query: 273 KGEWDFVQDI-FNHVSAGSE---VISDAYPSFVCNRIHKLREIQDD---VEKQTLASIFS 325
+ E D + F S G E +++ S+V + L ++D ++K+ L +
Sbjct: 233 QSELDSISAAPFLSASNGQERTALLAFRRSSWVNQHLSALFRDKEDGKGIDKRIL-KVIV 291
Query: 326 YITHLVKFKDQHSMDGGASAKQH--------RIPKILHQKFLTSFSD----AESKRLSDD 373
YI+ ++ F++ +M G KQ +P + FL+ F++ + +++
Sbjct: 292 YISAMIAFREA-TMRGRDFEKQKLQESQMLKAVPGPVLDGFLSRFAEQPRGSTKYQVTSQ 350
Query: 374 KIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKL----LREKNML- 428
K LL++Y+ L LH D+F T+ + IA DL K+ F+ LGC + L E L
Sbjct: 351 KRALLLAYMFALCLHVDNFATDTSLIANDLAQPTTKINPIFKSLGCSVKVLGLTELKRLG 410
Query: 429 ---------YATLPVPLQFPKAIQRRR 446
A L VPL+FP RRR
Sbjct: 411 LPDSAAATKRAVLDVPLKFPAPRLRRR 437
>gi|413920421|gb|AFW60353.1| hypothetical protein ZEAMMB73_233343 [Zea mays]
Length = 121
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 68/99 (68%), Gaps = 2/99 (2%)
Query: 351 PKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKL 410
P+ ++++ L F++ S + +K LL +Y+LVLTL ADDFR+NP+DI +DL+M+ L
Sbjct: 21 PQAVYRRLLFMFTEPGSSVMPTEKKELLTNYILVLTLFADDFRSNPSDICEDLKMTRQNL 80
Query: 411 RDHFEKLGCKLLREKNM--LYATLPVPLQFPKAIQRRRR 447
+ ++++LGCK + E + TLP PL+FPK + R+RR
Sbjct: 81 KPYYDQLGCKSVTEGAFKSTFMTLPAPLKFPKEVTRKRR 119
>gi|409043203|gb|EKM52686.1| hypothetical protein PHACADRAFT_261280 [Phanerochaete carnosa
HHB-10118-sp]
Length = 420
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 104/421 (24%), Positives = 192/421 (45%), Gaps = 56/421 (13%)
Query: 60 IPEQPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSS 119
I Q K P++ FP++ P R+Y ++ + +V D+
Sbjct: 23 ISGQQEKIGPVLASFPALQPPK--------STSFRLYTKKDQSGVPSSNDATLVGETDT- 73
Query: 120 VDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEP-RVRGSDV-ADKD 177
V++V + S +A A C Y VGV ++ T+T + R P + +V A K+
Sbjct: 74 VEFVSSPESEQAAAG--CSYLVGVYNKRTKT---------TVLRSAPLHILARNVKALKN 122
Query: 178 AGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKS-VKIN 236
E+S + + ++ L +GTKK+ + + + H N+ D ++ + +A ++ ++ N
Sbjct: 123 LKPMEVSVDERIKLRNTLGETFGTKKA-KAAIRAHERNRV-DIDAMRGVASHLQEDIQEN 180
Query: 237 KEALES-----TTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQ-DIFNHVSAGS 290
E+L + +D+ +PPY+A+A P Y L II + E++ VQ + +S+ +
Sbjct: 181 TESLPTQEEAKAAADSSRLIPPYNADAQRPDDVYKLHDIIPEAEFNAVQINNLKGMSSNN 240
Query: 291 EVISDAYPSFVCNRIHKLREIQDDVEK--QTLASIFSYITHLVKFKDQHSMDGGASAKQH 348
E ++ A P N +++ + K + I YI+ ++ F+ + Q
Sbjct: 241 ERVT-ALPYTRSNWVNQHMSLLFSTPKPNKIELKILFYISIMLAFRAASRVVSDKQVLQE 299
Query: 349 R---IPKILHQKFLTSFS----DAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAK 401
R +P I+ L+ F+ D +++ +L++++ L L DD+ T+ T IA+
Sbjct: 300 RLKVVPSIVLDGLLSRFTESSRDTNQAKITPAMETMLLAHMFALCLRVDDYATDTTLIAR 359
Query: 402 DLRMSEFKLRDHFEKLGCKL--LREKNMLYATLP------------VPLQFPKA-IQRRR 446
DL MS K+ F+ LGCK+ L + + LP VPL FPK ++R R
Sbjct: 360 DLSMSAAKVNPLFKSLGCKIETLTAQELKRLGLPDSAATTKRALLKVPLDFPKPRVKRTR 419
Query: 447 R 447
R
Sbjct: 420 R 420
>gi|395325048|gb|EJF57477.1| RNA polymerase I associated factor, A49-like protein [Dichomitus
squalens LYAD-421 SS1]
Length = 423
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 100/430 (23%), Positives = 195/430 (45%), Gaps = 61/430 (14%)
Query: 54 KAKVQFIPEQPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRME-LV 112
K +Q + ++ P++ FPS+ P + Y N KN + + +
Sbjct: 19 KVTLQLSSQPTSQVGPVLASFPSLQPPKST--------AFKCYVQRNRDKNASFETQPTL 70
Query: 113 VSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSD 172
V+ +V++ ++ C Y +GV D+ T T + P + + R +V+
Sbjct: 71 VAGEGETVEFFSADGPLQSTG---CSYMIGVHDKRTNTTVLRPAPLHVLAR---QVK--- 121
Query: 173 VADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMK- 231
A K+ E+SA + + L +GTKK+ + + + N+ D ++ KD+A ++
Sbjct: 122 -ALKNLNPIEVSAGERMAQRNNLGEAFGTKKA-KAAIRARERNRV-DIDAMKDVAGHLQD 178
Query: 232 SVKINKEALEST-----TSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQ-DIFNH 285
++ N + L + T+D+ +PPY+ +A P Y L II + E++ + + F +
Sbjct: 179 TIMANTDTLPTAEEAKATADSNRLIPPYNEDAQRPHDVYALHDIIPEAEFNAIPVNAFKN 238
Query: 286 VSAGSEVISDAYPSFVCNRIH----KLREIQD--DVEKQTLASIFSYITHLVKFKDQHSM 339
+ + D Y +R +LR I +K+ L +++ Y++ ++ F +
Sbjct: 239 AND----MQDCYALLPWSRSDWIKLQLRFIYSAPKPDKRELKTVY-YVSAMIAFYKNSRI 293
Query: 340 DGGASAKQHR---IPKILHQKFLTSFSDAESK----RLSDDKIHLLISYVLVLTLHADDF 392
G A QH+ +P I+ ++ F++ E +++ +L++Y+ L L DD+
Sbjct: 294 VGDKDALQHKLASVPSIILDGLISRFTEKERSTNKPKMTPQTETMLLTYMFALCLRVDDY 353
Query: 393 RTNPTDIAKDLRMSEFKLRDHFEKLGCKL-------LREKNM-------LYATLPVPLQF 438
T+ IA DL M K+ F+ LGC + L+E+ + A L +PL+F
Sbjct: 354 ATDTETIAHDLSMPPAKVSGLFKALGCTIKKLSPTELKERGLPDAAAETKRAVLKIPLEF 413
Query: 439 PKA-IQRRRR 447
PK+ ++R RR
Sbjct: 414 PKSRVKRARR 423
>gi|147902166|ref|NP_001086330.1| DNA-directed RNA polymerase I subunit RPA49 [Xenopus laevis]
gi|62901081|sp|Q6GLI9.1|RPA49_XENLA RecName: Full=DNA-directed RNA polymerase I subunit RPA49;
Short=RNA polymerase I subunit A49; AltName:
Full=DNA-directed RNA polymerase I subunit E; AltName:
Full=RNA polymerase I-associated factor 1; AltName:
Full=RNA polymerase I-associated factor 53
gi|49256388|gb|AAH74496.1| MGC84821 protein [Xenopus laevis]
Length = 419
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/369 (22%), Positives = 176/369 (47%), Gaps = 53/369 (14%)
Query: 95 VYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKI 153
+Y N ++K +T R +++ + D ++YVG ++S + + C Y VGVL++ T +++
Sbjct: 39 LYGNKDDKNPKTKRQKILAAETDR-LNYVGNNFSSDTLKCSSLCRYFVGVLNKETGKMEV 97
Query: 154 VPIAANKIFRLEPRVRGS--------DVADKDAGKGEISAEVQANMKAMLDTRYGTKKSL 205
F+++P ++ D+ D+ + + + A++++ +GT K
Sbjct: 98 YDAEQ---FKMQPILKSGMENELHTEDIVDQP------TKSYREKVDALIES-FGTNKQK 147
Query: 206 R--QSKKMH-----ALNKENDPESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDANA 258
R S+K++ LNK ++ +++ + ++ K+A E DT L +PP D NA
Sbjct: 148 RALSSRKLNQVGSDILNKAM-AKAAEEIIESRGTTELIKDAAEKREQDTSLFLPPCDFNA 206
Query: 259 TTPQQAYPLDKIILKGEWDFVQD----IFNHVSAGSEVISDAYPS--FVCNRIHKLREIQ 312
P+ AY D +I E+ ++ + N S G + + + S FV +H LREI+
Sbjct: 207 DKPENAYKFDNLISPVEYAALETASAALRNITSEGLQQMVEEKKSGLFVLQELHGLREIK 266
Query: 313 DDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRI-----PKILHQKFLTSFSDAES 367
D+ A Y+ L+K ++ K+ I P ++ K + +F+
Sbjct: 267 DEKALDHQARCLWYLDALIKLSQLRTV------KRKDILTPECPSVVCWKLMKNFTVETY 320
Query: 368 KR------LSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKL 421
K +S +++Y++ + LH DF+ + T + +D+++ E ++ + + +G K+
Sbjct: 321 KNGRIQNAISGTTKTKIVAYIIAIALHICDFQVDLTLLQRDMKLKESRILEIAKVMGLKI 380
Query: 422 LREKNMLYA 430
+K M+Y+
Sbjct: 381 --KKRMMYS 387
>gi|350579387|ref|XP_001925849.3| PREDICTED: DNA-directed RNA polymerase I subunit RPA49, partial
[Sus scrofa]
Length = 372
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/359 (23%), Positives = 169/359 (47%), Gaps = 39/359 (10%)
Query: 108 RMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEP 166
R + +++ + YVG ++ A+ C + VG+L++++ +++ ++F ++P
Sbjct: 7 RSQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDA---EMFNMQP 63
Query: 167 RVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QSKKMHALNKEN----DP 220
GS + + ++ A M + ++ +GT K R S++M+ + E+
Sbjct: 64 LFTGSSAKSELHLRSAVTELSLAQMDSCIEA-FGTTKQKRALNSRRMNKVGSESLNRAVA 122
Query: 221 ESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQ 280
++ +D+ + +A+ S D L +PP A+A P+ Y + ++ E+D +Q
Sbjct: 123 KAAEDIIDSKGVTALVSDAIHSDLQDDSLYLPPCHADAAKPEDVYKFEDLLSPAEYDALQ 182
Query: 281 ---DIFNHVSAGSEVI-----SDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVK 332
+ F +V+ SE I +++ SFV + L Q+ ++Q A ++ L+K
Sbjct: 183 SPSEAFRNVT--SEQILKMIEENSHCSFVIEALKSLPSNQESRDRQ--ARCIWFLDTLIK 238
Query: 333 FKDQHSMDGGASAKQHRIPKILHQKFLTSFS----DAESKR--LSDDKIHLLISYVLVLT 386
F+ Q + SA IP ++ K L F+ + S R +SD + +YV++L
Sbjct: 239 FRAQKVIKR-KSALGPGIPHVISTKLLKHFTCLTYNNGSLRNVISDSMKAKITAYVIILA 297
Query: 387 LHADDFRTNPTDIAKDLRMSE---------FKLRDHFEKLGCKLLREKNMLYATLPVPL 436
LH +DF+ + T + +DL++SE +L+ K+ RE++ TL +PL
Sbjct: 298 LHINDFQIDLTMLQRDLKLSEKRMMEIAKAMRLKISKRKVSLAAGREEDHKLGTLSIPL 356
>gi|389743236|gb|EIM84421.1| RNA polymerase I associated factor A49-like protein [Stereum
hirsutum FP-91666 SS1]
Length = 447
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 103/475 (21%), Positives = 199/475 (41%), Gaps = 80/475 (16%)
Query: 23 GPKKKNKKRKKDKANTTIDEQPEPELEPERVKAKVQFIPEQPNKAPPLVGYFPSIYKPDV 82
P + KKRK+ ++ T + + LEP + + + P++ FP++ P
Sbjct: 2 APDARTKKRKRSDSDATASDGKKLILEPSSIPS---------TQVGPVLVSFPALQPPK- 51
Query: 83 DHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVG 142
+ Y + E R + ++ SV++ G + + + + A+
Sbjct: 52 -------ETSFKCYVHEGEDGKEFYRQNITLAGETDSVEFEGANATRDGALGSRYYIALH 104
Query: 143 VLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTK 202
S TL+ P+ + + R++ A G + S + A + L +GTK
Sbjct: 105 RPSSSKVTLQPAPL--HILGHTVKRLKSLSSASSSTGPSQ-SERIMA--RNALGQAFGTK 159
Query: 203 KSLRQSKKMHALNKEN--DPESQKDLALKMKS-VKINKEALES-----TTSDTVLNVPPY 254
K+L Q + N+ N D + + +A ++S ++ E L + + +D +P Y
Sbjct: 160 KALAQIRA----NERNKVDVSAMESVAPVLQSGIERGTENLPTMEEAKSAADMARLIPRY 215
Query: 255 DANATTPQQAYPLDKIILKGEWDFVQDIFNHV--------SAGSEVISD---AYP----S 299
DA AT+P++AYPL II + EW + +++ + G + + +P +
Sbjct: 216 DAEATSPEEAYPLHGIIPEQEWSALDGVWSSIKTIKAKEKETGERNVPEWNKMWPVQRST 275
Query: 300 FVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHS----------MDGGASAKQHR 349
+V ++K + +++ + + YI ++ F+ Q S +D + A +
Sbjct: 276 WVKQHVNKAFGVMKPAQQKRVVKLLFYIAAMMSFRIQTSRGKVPDREVLLDRMSPAPETI 335
Query: 350 IPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFK 409
+ +L ++F A +++ + L+S++L L L D+F + PT IA DL+M+
Sbjct: 336 VDGLL-ERFTEQARAATTRQATSSTQTNLLSHMLALCLKVDNFASEPTLIAADLQMAANT 394
Query: 410 LRDHFEKLGCKL-----------------LREKNMLYATLPVPLQFPKAIQRRRR 447
+ F LGCK+ + EK A L PL FPK +RR
Sbjct: 395 VNSIFRSLGCKIETLDAADLTKYGIAPSAVGEKR---AILKTPLVFPKPRNNKRR 446
>gi|392587278|gb|EIW76612.1| Rpa49 subunit specific to nuclear RNA polymerase I [Coniophora
puteana RWD-64-598 SS2]
Length = 436
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 99/419 (23%), Positives = 177/419 (42%), Gaps = 44/419 (10%)
Query: 60 IPEQPNKA-PPLVGYFPSIYKPD--VDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPR 116
+ QP+ + P++ FPS+ KP ++ + +E+ M +++
Sbjct: 29 LSSQPSSSVGPVLANFPSV-KPSKTTSFKCYKLSHGTSKSKTEDEEDTSFAEMPTLIAGE 87
Query: 117 DSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADK 176
+V++ + + +A + + AV T TL+ VP+ L RV+ A K
Sbjct: 88 TDAVEFFSSDETRQASSGSRYYVAVHRKSTGTTTLRPVPL-----HLLTQRVK----ALK 138
Query: 177 DAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMK-SVKI 235
+SA + +A L +GTKK+ + + + NK D + +D+A ++ S+
Sbjct: 139 SIQPAPVSALQRLEARAALGETFGTKKA-QAAIRAQERNKV-DVSAMRDVAGYLQDSIAA 196
Query: 236 NKEALES-----TTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGS 290
N ++L + ++D+ VP Y+A+A TPQ YPL II + EW + +
Sbjct: 197 NTQSLPTQEEAKASADSARLVPKYNADALTPQDIYPLHNIIPEAEWKSISVSSMTAAKTQ 256
Query: 291 EVISDAYPSFVCNRI--HKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQH 348
+ P N I H + +T+ YI+ L+ F+ SA Q
Sbjct: 257 SERTSLLPFRRSNWINQHLNQAFAAPSPNKTVLRTLFYISTLLAFRQAAFRSVDRSAIQE 316
Query: 349 RIPKI-------LHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAK 401
+ P++ + +F S DA + + LL+++ L L DDF ++ T IA
Sbjct: 317 KFPQVPSIIIDGIISRFTESGRDATKLQSTTRSETLLLAHTFALCLRVDDFASDTTLIAS 376
Query: 402 DLRMSEFKLRDHFEKLGCKL--LREKNMLYATLP------------VPLQFPKAIQRRR 446
DL+ + F+ LGC + L + ++ LP PL+FPK +RR
Sbjct: 377 DLQKPVTTINQLFKSLGCTINKLTQSDLKRLGLPDSAAETKRAVLSAPLEFPKQRMKRR 435
>gi|291223040|ref|XP_002731523.1| PREDICTED: RNA polymerase I associated factor 53-like [Saccoglossus
kowalevskii]
Length = 426
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 106/407 (26%), Positives = 173/407 (42%), Gaps = 71/407 (17%)
Query: 91 PKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEA-MAPQFCHYAVGVLDRSTQ 149
PK Y N N R ++V D +DYVG +Y +A + C Y VGVLD+ T
Sbjct: 40 PKFGYYCNKNFHDPRDKNKRILVGETDK-MDYVGYNYGLKASQSNALCKYMVGVLDKKTG 98
Query: 150 TLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKS----- 204
+K+ + F + P++ + D K E+S ++ N +L +G+ K
Sbjct: 99 KMKVYDA---QYFIVRPKLDNEE--DDVEEKPELSF-IEKN--DILTKAFGSSKKKRAVE 150
Query: 205 --LRQSKKMHALNKENDPESQKDLALKMKSVKI--NKEALESTTSDTVLNVPPYDANATT 260
L ++ AL + + Q+ A + +I ++EA ES +PP+DA AT
Sbjct: 151 SRLNSKLEVDALGQSMETAVQQAKAQSQQITRIPGDQEA-ESV-------IPPFDAKATK 202
Query: 261 PQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDA------------------------ 296
P+ Y L + + G + ++ + VISD
Sbjct: 203 PEDVYKLQDMSVVG-YVLIEKNNKFSLINNSVISDTQMESLKVLATELISSTENQKSESK 261
Query: 297 YPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQ---HRIPKI 353
+ ++ + ++ D + K+T+A Y+ +LV H+ K P
Sbjct: 262 HLLYISHHLYNCLPT-DQLRKETMACQLLYLHYLVIL--YHTKARSLQRKSIFPDETPAF 318
Query: 354 LHQKFLTSFS------DAESKRLSDDKIHL---LISYVLVLTLHADDFRTNPTDIAKDLR 404
+ L F+ D+E K + L L+SY+LVL LH D F N + KDL+
Sbjct: 319 IASSLLEIFTCEAISPDSEHKTIRYMSARLKDRLLSYILVLCLHIDRFNMNLDLLQKDLK 378
Query: 405 MSEFKLRDHFEKLGCKLLREK---NMLYATLPVPLQFP-KAIQRRRR 447
+ + KL + LGCK+ R + + TLP+PL FP KA QR+R+
Sbjct: 379 IPKKKLLVYVNSLGCKVARARTPQDPQRVTLPIPLTFPEKARQRKRK 425
>gi|307105048|gb|EFN53299.1| hypothetical protein CHLNCDRAFT_136963 [Chlorella variabilis]
Length = 442
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 95/403 (23%), Positives = 169/403 (41%), Gaps = 65/403 (16%)
Query: 51 ERVKAKVQFIPEQPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRME 110
E + A + P + P V YFPS + P E + Y + +E+KN+
Sbjct: 8 EALPASIAQEPASTSGTGPFVVYFPSRFDPKGGVACE-----WQTYAH-SERKNQY---- 57
Query: 111 LVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRG 170
+VV+ S VD+VG++ E + C YA+G+ R + L+++P KI RLEPRVRG
Sbjct: 58 MVVAKTKSKVDFVGSTSHPEYSSALPCRYALGLFSRRSGKLEVMPAEGGKILRLEPRVRG 117
Query: 171 SDVADKDAGKGEISAEVQANMK---AMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLA 227
+ +G + Q +K L +G+++ RQ K A E S
Sbjct: 118 ----ESYEARGTTTVIEQGGLKDANMRLVEEFGSQRRKRQLKAREAGKVEAGHVSAGAAV 173
Query: 228 LKM------KSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQ- 280
L M ++ + +E + S+ + N+PP+ A+A + +AY D+I+ D ++
Sbjct: 174 LGMIASVGAEAAQTKEEVIRSSLAHR--NIPPHHADARSAGEAYRSDEIVPLSFRDALEV 231
Query: 281 ----------DIFNHVSAGSEVISDAYPSFVCNRIHKL----REIQDDVEKQTLASIFSY 326
D + A S + Y V +R+ L RE++++ +
Sbjct: 232 TKLFPAENKPDYRAQLKA-SGMFGAGY---VFSRLGLLSTQDRELREERCRMLTLLGHLL 287
Query: 327 ITHLVKFKDQHSMDGGASAKQHRI---PKILH---QKFLTSFSDAESKR--LSDDKIHLL 378
++ GG ++ P +L F T + E ++ +S +K LL
Sbjct: 288 KLQQARWGHLKEGPGGLEELAQKVKAAPSVLEGLLSLFYTEEAGFEGRKYLMSKEKRSLL 347
Query: 379 ISYVLVLTLH--ADDFRTNPTDIAKDLRMSEFKLRDHFEKLGC 419
+ ++LVL + AD+ + P ++ + R +LGC
Sbjct: 348 LGWILVLAVRCLADELKVRPGELVQRYR-----------ELGC 379
>gi|392563364|gb|EIW56543.1| RNA polymerase I associated factor A49-like protein [Trametes
versicolor FP-101664 SS1]
Length = 423
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 102/436 (23%), Positives = 187/436 (42%), Gaps = 74/436 (16%)
Query: 54 KAKVQFIPEQPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRME-LV 112
KA + F + ++ P++ FPS+ P + Y KN + +
Sbjct: 19 KASLVFSTQPASQVGPVLASFPSLEPPK--------STAFKCYVQKGADKNAPFETQSTI 70
Query: 113 VSPRDSSVDYVGTSYSGEA-MAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGS 171
V+ +V++ ++ + + C Y +GV D+ T T + P+ + + R +V+
Sbjct: 71 VAGEAETVEF----FTADGPLTSTGCSYMIGVHDKRTNTTTLRPVPLHVLTR---QVK-- 121
Query: 172 DVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMK 231
A K+ E+S E + + L +GTKK+ Q + D ++ K++ ++
Sbjct: 122 --ALKNLRPIEVSTEERMAQRNTLGEAFGTKKAKAQIRARE--RNRVDIDAMKNVTGHLQ 177
Query: 232 -SVKINKEALEST-----TSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNH 285
++ N E L + T+D+ +PPY+A+A + + Y L II + E++ +
Sbjct: 178 DTIMQNTETLPTADEAKATADSSRLIPPYNADALSAKDVYALHDIIPEVEFNALP----- 232
Query: 286 VSAGSEVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFS-------------YITHLVK 332
+SA SD +RI L + D K L I+S YI+ ++
Sbjct: 233 ISAFKSAKSDR------DRIALLPFNRSDWLKLQLKLIYSAPKANKTDLKIVYYISTMMA 286
Query: 333 FKDQHSMDGGASAKQHR---IPKILHQKFLTSFSDAESK----RLSDDKIHLLISYVLVL 385
F G A Q R +P I+ ++ F++ E +++ +L++Y+L L
Sbjct: 287 FNKSSRSVGDKDALQQRLPGVPPIVLDGLISRFTEIERSTNKPKMTPQTETMLLAYMLSL 346
Query: 386 TLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKL-------LREKNM-------LYAT 431
L +D+ + IA DL M+ K+ F+ LGC + L+E+ + A
Sbjct: 347 CLQVEDYAADVDTIAHDLSMAPTKVSGLFKSLGCVIKKLGPNELKERGLPDSAAETKRAV 406
Query: 432 LPVPLQFPKAIQRRRR 447
L VPL+FPK +R R
Sbjct: 407 LKVPLEFPKNRVKRAR 422
>gi|403419214|emb|CCM05914.1| predicted protein [Fibroporia radiculosa]
Length = 414
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 94/379 (24%), Positives = 167/379 (44%), Gaps = 64/379 (16%)
Query: 110 ELVVSPRDSSVDYVGTSYSGEA-MAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRV 168
++VV+ +V++ +GE A C Y VG+ D+ T + A + + +V
Sbjct: 58 DIVVAGETDTVEFF---TAGEVRQAANGCSYLVGIHDKRTN---LTTFRAAPLHIITRQV 111
Query: 169 RGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLAL 228
+ A K+ E++ + + ++ L +GTKK+ + + + N+ D ++ K +
Sbjct: 112 K----ALKNLAPAEVTTDERVRLRNKLGETFGTKKA-KAAIRAQERNRV-DIDAMKGVTS 165
Query: 229 KMK-SVKINKEALEST-----TSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDI 282
++ ++ N +L +T ++D+ +PPY+ANA+ P Y L II E + +
Sbjct: 166 HLQDTIMENTGSLPTTEEAKASADSSRLIPPYNANASRPDDVYALQDIIPDAEMNALS-- 223
Query: 283 FNHVSAGSEVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFS-------------YITH 329
+SA +D RI L + + KQ + +FS YI+
Sbjct: 224 ---LSALKSAKTDQ------ERIALLPFSRSNWIKQHVHLLFSAPKLRKIDMKTVLYISI 274
Query: 330 LVKFKDQHSMDGGASAKQHR---IPKILHQKFLTSFS----DAESKRLSDDKIHLLISYV 382
+ FK Q R +P I+ L F+ D+ S +++ +L++Y+
Sbjct: 275 MFAFKTASRSVNDKETLQKRLAGVPPIVLDGLLARFTETTRDSSSVKITSQTETMLLTYM 334
Query: 383 LVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKL--LREKNMLYATLP------- 433
L L LH DDF T+ IA+DL M+ K+ F+ LGCK+ L K + LP
Sbjct: 335 LTLCLHVDDFATDTDLIARDLSMAPTKVNQLFKALGCKIEKLDPKELKRLGLPDSAGESK 394
Query: 434 -----VPLQFPKAIQRRRR 447
P+QFP+ +R R
Sbjct: 395 RAVLRTPVQFPQPRAKRAR 413
>gi|384251376|gb|EIE24854.1| hypothetical protein COCSUDRAFT_41132 [Coccomyxa subellipsoidea
C-169]
Length = 453
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 111/242 (45%), Gaps = 25/242 (10%)
Query: 50 PERVKAKVQFIPEQPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRM 109
PE + + P + PL YFPS ++P + E + T R+
Sbjct: 12 PETIDLQHADAPSTSGRTGPLAVYFPSGFQPG------------KHGSCTWELHSNTSRV 59
Query: 110 -ELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRV 168
+ VV R VD+VG+ S +A P C YAVGVLD++T ++ + I R+EPR
Sbjct: 60 NDHVVVARTGDVDFVGSCRSVDAAGPPACKYAVGVLDKATGVMRYAEVGTGNIVRMEPRA 119
Query: 169 RGSDVADKDA---GKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKD 225
RG + A + +I A + N + L +G+++ RQ + + +D + +D
Sbjct: 120 RGVNYGPTGAITEQEDDIRARILQNKR--LVHAFGSQRRKRQLDQKESAKVGDDNVAAQD 177
Query: 226 LALKMKSVKINKEALESTTSDTVL-------NVPPYDANATTPQQAYPLDKIILKGEWDF 278
+ + +K A+ T D VL ++PP+ AT+ AY L++++ + W+
Sbjct: 178 AVEDLLAAAGDKAAVAKMTKDDVLKAVTNVRHIPPHHPEATSAAAAYKLEELVPEEAWET 237
Query: 279 VQ 280
++
Sbjct: 238 LE 239
>gi|452821720|gb|EME28747.1| DNA-directed RNA polymerase I subunit A49 isoform 1 [Galdieria
sulphuraria]
Length = 392
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 100/361 (27%), Positives = 159/361 (44%), Gaps = 44/361 (12%)
Query: 107 GRMELVVSPRDSSVDYVGTSYSGEAMAPQ-FCHYAVGVLDRSTQTLKIVPIAANKIFRLE 165
GR LV++ D++ Y EA++ F Y +GV R T I I +I L
Sbjct: 39 GRGSLVLA--DNNSGYSMPVSVKEAVSQHCFARYFIGVKKRGENT--IYCIEPQQIVHLY 94
Query: 166 PRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTK--KSLRQSKKMHALNK-ENDPES 222
P +R + +D E S + +K L ++G+K K R + +A+N+ E D E
Sbjct: 95 PAIRQTQ---RDYS--ETSQLSKGELKTQLIAKFGSKATKKRRDAVLRNAVNELEVDKEE 149
Query: 223 QKDLALKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEW------ 276
K + + V+ + +LE L PP + T +AYPL IIL EW
Sbjct: 150 FKAVESSISQVRTS-SSLEDALHSIAL--PPMNKETTVLSEAYPLQAIILPREWKEMESS 206
Query: 277 ----DFVQDIFNHVSAGSEVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVK 332
D + D+ + + V P + N +R Q +Q L ++ +L K
Sbjct: 207 VGILDSLMDM-DALKKNDMVDMWGVPEPLANDFF-MR--QGSKGQQELICCL-FLKYLCK 261
Query: 333 F----KDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIHL----LISYVLV 384
F K + A+ IP +L ++FL F++ ++KR + + L LI LV
Sbjct: 262 FHTFPKTLKQKQVASWAEDSGIPNVLLERFLADFAEYDTKRRTYFRSPLYMDKLIYSALV 321
Query: 385 LTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREK-----NMLYATLPVPLQFP 439
+ LH F +P IA+ L M+ + +F +LGCK+ + K A+L VPLQFP
Sbjct: 322 VWLHLVGFSGDPQHIAELLGMTVLRCLLYFRQLGCKVQQMKKGANTKSYQASLQVPLQFP 381
Query: 440 K 440
+
Sbjct: 382 E 382
>gi|327277241|ref|XP_003223374.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49-like [Anolis
carolinensis]
Length = 410
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 91/386 (23%), Positives = 176/386 (45%), Gaps = 49/386 (12%)
Query: 95 VYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKI 153
+YRN + N + ++ ++ + YVG ++ A+ C Y VGVLD+ + L++
Sbjct: 39 LYRN-KDTTNPRKKQKVTLNAETERLSYVGNNFGAGALKCNTLCRYYVGVLDKDSGQLEV 97
Query: 154 VPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDT---RYGTKKSLR--QS 208
++F ++P V +V D D +S + + + +D +GT K R S
Sbjct: 98 YNA---ELFNMQPLV-SDNVEDDD-----LSEYLNKSYREKVDLCIEAFGTSKQKRALNS 148
Query: 209 KKMHALNKE----NDPESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQA 264
++M+A+ KE ++ +D+ + + +A EST SDT L +PP+ +A +
Sbjct: 149 RRMNAVGKEVLNMAVIKAAEDVIETKGTDAVVNDAAESTKSDTSLALPPFHEDAEKVEDV 208
Query: 265 YPLDKIILKGEWDFVQD---IFNHVSAGSEVI---SDAYPSFVCNRIHKLREIQDDVEKQ 318
Y + II E++ +Q F +++ V +Y FV N + + D+ ++
Sbjct: 209 YKFEDIISPAEYEALQAPAAAFMNITTKDIVKMTEEKSYCFFVLNELKSMP--MDEKKRD 266
Query: 319 TLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIHLL 378
A ++ LVK Q M + P I+ K + +F+ + S+ ++
Sbjct: 267 HKARCLWFLDALVKLSSQR-MVKKKNGFSPDCPGIISNKIVKTFT---ALTYSNGRLQNQ 322
Query: 379 IS---------YVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNML- 428
IS YV+ L LH +DF T+ T + +DL++ + ++ D + + KL + K++
Sbjct: 323 ISASMKVKIAAYVIALALHINDFETDLTILQRDLKLRDNRIVDIAKAMRLKLTKSKSLSG 382
Query: 429 -------YATLPVPLQFPKAIQRRRR 447
+LP+P+ A +R R+
Sbjct: 383 LDEHRLGILSLPLPVYKVTAGRRTRK 408
>gi|449300957|gb|EMC96968.1| hypothetical protein BAUCODRAFT_45380, partial [Baudoinia
compniacensis UAMH 10762]
Length = 437
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 96/374 (25%), Positives = 160/374 (42%), Gaps = 61/374 (16%)
Query: 111 LVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRG 170
L+ S + +DY S A+ HY V V D +T L+I P A + R PR G
Sbjct: 81 LLHSSQHPRIDYTA---SASALDEHLAHY-VAVFDPTTSALQITP-AHHVTLRAAPRKAG 135
Query: 171 SDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QSKKMHALNKENDPESQ----K 224
DKD GK A + L +GTKK+ + S+ +A++K+ + + +
Sbjct: 136 IADGDKDEGKATTRGTYAAQ-RETLGREFGTKKAQKVIASRTQNAISKDAKGKGKMSEAQ 194
Query: 225 DLALKMKSVKINKEALESTTSDTVLN--VPPYDANATTPQQAYPLDKII--LKGEWDFVQ 280
D L+ + A D + + +P + A T ++ YP +I +
Sbjct: 195 DAVLESMATSTPATAPSKQQEDLLASKPIPQPNLAAETVEEVYPFSTLIPPHTSRLITIT 254
Query: 281 DIFNHVSAGSEVI-SDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSM 339
D A E++ + +P+F + K DD+ K Y+ L+ F D +
Sbjct: 255 DWQTKARANEEILLNHRFPAFRVGALGK----SDDIPK---LKALRYLALLLDFHDALAA 307
Query: 340 DGGASAKQHRIPK--ILHQKFLTSFSDAESKRLSDD-------------KIHL--LISYV 382
G A K +PK IL Q+ L ++S E ++L D K H+ L +++
Sbjct: 308 AGRAGKK---VPKKEIL-QRRLAAWSSPEQQQLVDSVRRRFANEANELPKWHMDNLCTHI 363
Query: 383 LVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLL----REK------------N 426
L+L+ D + TN TD+ DL+++ +L ++ +LG K+ REK +
Sbjct: 364 CALSLYVDGWMTNTTDLKLDLKLTNQELGRYYAELGAKMSAPTEREKVEWKIKTKAEAAD 423
Query: 427 MLYATLPVPLQFPK 440
A L +PL+FPK
Sbjct: 424 TKVARLRLPLEFPK 437
>gi|77735763|ref|NP_001029580.1| DNA-directed RNA polymerase I subunit RPA49 [Bos taurus]
gi|74268164|gb|AAI03203.1| Polymerase (RNA) I polypeptide E, 53kDa [Bos taurus]
gi|296484675|tpg|DAA26790.1| TPA: polymerase (RNA) I polypeptide E, 53kDa [Bos taurus]
Length = 419
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/386 (22%), Positives = 183/386 (47%), Gaps = 47/386 (12%)
Query: 95 VYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKI 153
+Y+N N+ N R + +++ + YVG ++ A+ C + VG+L++++ +++
Sbjct: 43 LYKN-NDSTNPRKRSQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEV 101
Query: 154 VPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQA-NMKAMLDT---RYGTKKSLR--Q 207
++F ++P V + E + E QA + + +D+ +GT K R
Sbjct: 102 YDA---ELFNMQPLFSDESV------ESESTPESQAKSFREKMDSCIEAFGTTKQKRALN 152
Query: 208 SKKMHALNKENDPESQKDLALKMKSVK----INKEALESTTSDTVLNVPPYDANATTPQQ 263
S++M+ + E+ + A + K + +A+ D + +PP A+A P+
Sbjct: 153 SRRMNKVGSESLNRAVAKAAENIIDTKGVTALVSDAIHDDLQDDSVCLPPCHADAAKPED 212
Query: 264 AYPLDKIILKGEWDFVQ---DIFNHVSAGSEVI----SDAYPSFVCNRIHKLREIQDDVE 316
Y + ++ E+D +Q + F +V++ E++ +++ SFV + L ++ +
Sbjct: 213 VYKFEDLLSPVEYDALQSPSEAFRNVTS-EEILKMIEENSHCSFVIEALKSLPSNEESRD 271
Query: 317 KQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLS 371
+Q A Y+ L+KF+ Q + SA +P I++ K L F+ + + L
Sbjct: 272 RQ--ARCIWYLDALIKFRAQKVIKR-KSALGPGVPHIINTKLLKQFTCLTYNNGSLRNLI 328
Query: 372 DDKIHLLIS-YVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYA 430
D + I+ YV+VL LH + F+ + T + +DL++SE ++ + + + K+ + K L A
Sbjct: 329 SDSMKAKITAYVIVLALHINGFQIDLTMLQRDLKLSEKRMMEIAKAMRLKISKRKVSLAA 388
Query: 431 ---------TLPVPLQFPKAIQRRRR 447
TL +PL +++ R+ +
Sbjct: 389 GGEEEHRLGTLSIPLPPAQSLDRQSK 414
>gi|449544165|gb|EMD35139.1| hypothetical protein CERSUDRAFT_116615 [Ceriporiopsis subvermispora
B]
Length = 423
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 112/461 (24%), Positives = 193/461 (41%), Gaps = 89/461 (19%)
Query: 28 NKKRKKDKA-------NTTIDEQPEPELEPERVKAKVQFIPEQPNKAPPLVGYFPSIYKP 80
+KKRK+D A +D QP +L P F QP + P + SI
Sbjct: 6 SKKRKRDAAQDESSSVTLQLDGQPPTKLGP----VLASFPALQPGRNTPFQCHAASISDS 61
Query: 81 DVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAMAPQFCHYA 140
DV EM ++ +V++ SG++ AP C Y
Sbjct: 62 DVPFNAREM----------------------TLAGETDAVEFFN---SGDSAAPG-CSYL 95
Query: 141 VGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYG 200
VG+ D+ T+T + P + + R +V+ A K+ ++ + + ++ L +G
Sbjct: 96 VGIYDKRTKTTTLRPAPLHILTR---QVK----ALKNLRSMAVTEDERVALRNRLGEAFG 148
Query: 201 TKKSLRQSKKMHALNKENDPESQKDLALKMKSVKINKEALES-----TTSDTVLNVPPYD 255
TKK+ + N+ + Q +++ N +L + ++D+ +P Y+
Sbjct: 149 TKKAKAAIRAAER-NRVDVDAMQGVTGHLQDTIQQNTGSLPTQEEAKASADSSRLIPAYN 207
Query: 256 ANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSE-----VISDAYPSFVCNRIHKLRE 310
A+AT P YPL II + E + +Q I SAGS ++ + +++ + + L E
Sbjct: 208 ADATRPNDVYPLHNIIPEAELNAIQ-IGAFRSAGSHEKRKALLPYSRSNWINDHLFLLFE 266
Query: 311 IQDDVEKQTLASIFSYITHLVKFK-------DQHSMDGGASAKQHRIPKILHQKFLTSFS 363
+ K L I YI+ + F+ D+ ++ K +P I+ L+ F+
Sbjct: 267 -APRLSKSNL-KILIYISAMFAFRAASRSVSDRQTLQ----TKLGNVPSIVIDGLLSRFT 320
Query: 364 DA-----ESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLG 418
+ +K S + LL +++ L L DDF T+ T +A DL M+ K+ F+ LG
Sbjct: 321 ETVRNTNTAKTTSQTETSLL-THMFALCLRMDDFATDTTAVAHDLSMAVDKVNMLFKSLG 379
Query: 419 CKL--LREKNMLYATLP------------VPLQFPKAIQRR 445
CK+ L + + LP VPL+FPK RR
Sbjct: 380 CKVEKLDQAQVKRLGLPDGAAEAKRAVLKVPLEFPKTRVRR 420
>gi|432110740|gb|ELK34217.1| DNA-directed RNA polymerase I subunit RPA49 [Myotis davidii]
Length = 488
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 106/456 (23%), Positives = 197/456 (43%), Gaps = 67/456 (14%)
Query: 48 LEPERVKAKVQFIPEQPNKAPPLVG-YFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRT 106
L P A V IP ++ + PS PDE R + + N +
Sbjct: 41 LPPRVTDALVALIPGLGDRRGVMAAEVLPSAKWLYCGEPDESQRAVLVQFSNGKLQNPDN 100
Query: 107 GRMEL-----VVSPRDSS----------VDYVGTSY-SGEAMAPQFCHYAVGVLDRSTQT 150
R L +PR S + YVGT++ +G C + VG+L++++
Sbjct: 101 MRFSLYKNKDATNPRKKSQRILAAETDRLSYVGTNFGTGALKCNTLCRHFVGILNKTSSQ 160
Query: 151 LKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QS 208
+++ ++F ++P V + + E S + M + ++ +GT K R S
Sbjct: 161 MEVYDA---ELFNMQPLFSDESVESELTPESE-SKTFRDKMDSCIEA-FGTTKQKRALNS 215
Query: 209 KKMH-----ALNKENDPESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQ 263
++M+ +LN+ ++ + K + +N +AL D L +PP A+A P+
Sbjct: 216 RRMNRVGNESLNRAVAKAAESIIDTKGVTALVN-DALHDNLQDDSLCLPPCHADADKPED 274
Query: 264 AYPL-DKIILKGEWDFVQ---------DIFNHVSAGSEVI----SDAYPSFVCNRIHKLR 309
Y D+I+L E + + F +V++ E++ +++ SFV + L
Sbjct: 275 VYKFEDRILLLVEMLPISQYEALRSPSEAFRNVTS-EEILKMIEENSHCSFVIEALKSLP 333
Query: 310 EIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----D 364
++ ++Q A ++ L+KF+ Q + SA IP I+ K L F+ +
Sbjct: 334 ASEESRDRQ--ARCIWFLDTLIKFRAQKVIKR-KSALGPGIPHIITTKLLKHFTCVTYNN 390
Query: 365 AESKRLSDDKIHL-LISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLR 423
+ L D + +I+YV+VL LH +DF+ + T + +DL++SE ++ + + + K+ +
Sbjct: 391 GSLRNLISDSMKAKIIAYVIVLALHINDFQIDLTLLQRDLKLSEKRMLEIAKAMRLKISK 450
Query: 424 EKNMLYA---------TLPVPL----QFPKAIQRRR 446
K L A TL +PL + QRRR
Sbjct: 451 RKVSLAAGGEEEHRLGTLCIPLPPAQTLDRQSQRRR 486
>gi|73971380|ref|XP_531998.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 isoform 1
[Canis lupus familiaris]
Length = 419
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/381 (22%), Positives = 176/381 (46%), Gaps = 43/381 (11%)
Query: 100 NEKKNRTGRMELVVSPRDSSVDYVGTSY-SGEAMAPQFCHYAVGVLDRSTQTLKIVPIAA 158
N+ N R + +++ + YVG ++ +G C + VG+L++++ +++
Sbjct: 47 NDSTNPRKRSQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMQVYDA-- 104
Query: 159 NKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QSKKMHALNK 216
++F ++P + + + D + + + M + ++ +GT K R S++M+ +
Sbjct: 105 -ELFNMQP-LFADESLESDLTQESQAKTFREKMDSCIEA-FGTTKQKRALNSRRMNTVGS 161
Query: 217 ENDPESQKDLALKMKSVK----INKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIIL 272
E+ + A + K + +A+ D L +PP A+A P+ Y + ++
Sbjct: 162 ESLNCAVAKAAENIIDAKGVTALVNDAIHDDLQDDSLYLPPCHADAAKPEDVYKFEDLLS 221
Query: 273 KGEWDFVQ---DIFNHVSAGSEVI----SDAYPSFVCNRIHKLREI-QDDVEKQTLASIF 324
E++ +Q + F +VS+ E++ +++ SFV I L+ + D+ + A
Sbjct: 222 TAEYEALQSPSEAFRNVSS-EEILKMIEENSHCSFV---IEALKSLPSDEKSRDRQARCI 277
Query: 325 SYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDKIHLLI 379
++ L+KF+ Q + SA IP +++ K L F+ + + L D + I
Sbjct: 278 WFLDTLIKFRAQKVVKR-KSALGPGIPHVINTKLLKHFTCLTYNNGSLRNLISDSMKAKI 336
Query: 380 S-YVLVLTLHADDFRTNPTDIAKDLRMSE---------FKLRDHFEKLGCKLLREKNMLY 429
+ YV++L LH DF+ + T + +DL++SE +L+ K+ RE++
Sbjct: 337 TAYVIILALHISDFQIDLTMLQRDLKLSERRMIEIAKAMRLKISKRKVSLAAGREEDHKL 396
Query: 430 ATLPVPL---QFPKAIQRRRR 447
TL +PL Q K +RR+
Sbjct: 397 GTLSIPLPPAQTSKHQSKRRK 417
>gi|19115294|ref|NP_594382.1| DNA-directed RNA polymerase I complex subunit Rpa49 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|6094117|sp|O14086.1|RPA49_SCHPO RecName: Full=DNA-directed RNA polymerase I subunit rpa49;
Short=RNA polymerase I subunit A49; AltName:
Full=DNA-directed RNA polymerase I 49 kDa polypeptide
gi|2408059|emb|CAB16261.1| DNA-directed RNA polymerase I complex subunit Rpa49 (predicted)
[Schizosaccharomyces pombe]
gi|12055095|emb|CAC20964.1| Rpa49 subunit specific to nuclear RNA polymerase I
[Schizosaccharomyces pombe]
Length = 425
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 100/424 (23%), Positives = 178/424 (41%), Gaps = 56/424 (13%)
Query: 57 VQFIPEQPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPR 116
V+ +P + PPLV Y P E R + + +K N++ R ++ R
Sbjct: 24 VKILPLSESSLPPLVTTISGFYPP------ENTRFQ------LLKKSNQSNRDASLIG-R 70
Query: 117 DSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADK 176
V + + S + +C + V D++ + KIVP A + E + DK
Sbjct: 71 TERVQFEAKNQSTATVEANYC---LAVADKTGRVKKIVP--AKYLNTFERNILALQEKDK 125
Query: 177 DAGK--GEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKS-V 233
K G +S V +A L +GT+KS Q M E+ D+ ++ S V
Sbjct: 126 FLKKKHGTVSGTVM-EQRANLGLAFGTRKS--QKAIMEESANRVKAETLGDVKDQLVSNV 182
Query: 234 KINKEALESTTSDTVLN-----VPPYDANATTPQQAYPLDKIILKGEWD--FVQDIFNHV 286
+ EAL + +PP + A + + AY L+ II K E+ +++ + +
Sbjct: 183 QKATEALPTQEDIAAAQAQDRPIPPVNVGAESIEDAYKLEDIIPKEEFSAIYIKPLLENP 242
Query: 287 SA--GSEVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGAS 344
++++ + F+ R +L I++ +K+ A I YI+ L F G
Sbjct: 243 DERNWAKLLPYRHSLFINERFQRLLSIEEVDQKR--ARILYYISLLQAFLFSRRSVGNRE 300
Query: 345 AKQHRI---PKILHQKFLTSFSDAE---SKRLSDDKIHLLISYVLVLTLHADDFRTNPTD 398
+ ++ P+IL + F+ S ++S ++ +I Y+LVL L D++ T+
Sbjct: 301 TLRKKLADPPEILIDGLIKRFTQTTGIGSVQVSSREVDKIICYILVLCLIVDNYSTDVLT 360
Query: 399 IAKDLRMSEFKLRDHFEKLGCKLLR---------------EKNMLYATLPVPLQFPKAIQ 443
+A DL + K + F +GC+++ KN A L +PL+FPK +
Sbjct: 361 LANDLNVKTMKANELFRTVGCRIMAYTETQRMALGLNKTDAKNHKRAVLKIPLEFPKPRR 420
Query: 444 RRRR 447
R R
Sbjct: 421 GRAR 424
>gi|426220180|ref|XP_004004295.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Ovis aries]
Length = 419
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 81/375 (21%), Positives = 173/375 (46%), Gaps = 47/375 (12%)
Query: 95 VYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKI 153
+Y+N N+ N R + +++ + YVG ++ A+ C + VG+L++++ +++
Sbjct: 43 LYKN-NDSTNPRKRSQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEV 101
Query: 154 VPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QSKKM 211
++F ++P V + + + + M + ++ +GT K R S++M
Sbjct: 102 YDA---ELFNMQPLFSDESVESESTLDSQ-AKSFREKMDSCIEA-FGTTKQKRALNSRRM 156
Query: 212 HALNKENDPESQKDLALKMKSVKINKEALESTTSDTV--------LNVPPYDANATTPQQ 263
+ + E S K I+ + + + SD + + +PP A+A P+
Sbjct: 157 NKVGSE----SLNRAVAKAAENIIDTKGVTALVSDAIHDESPGDSVYLPPCHADAAKPED 212
Query: 264 AYPLDKIILKGEWDFVQ---DIFNHVSAGSEVI----SDAYPSFVCNRIHKLREIQDDVE 316
Y + ++ E+D +Q + F +V++ E++ +++ SFV + L ++ +
Sbjct: 213 VYKFEDLLSPVEYDALQSPSEAFRNVTS-EEILKMIEENSHCSFVIEALKSLPSNEESRD 271
Query: 317 KQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLS 371
+Q A Y+ L+KF+ Q + SA +P I++ K L F+ + + L
Sbjct: 272 RQ--ARCIWYLDTLIKFRAQKVIKR-KSALGPGVPHIINTKLLKQFTCLTYNNGSLRNLI 328
Query: 372 DDKIHLLIS-YVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNML-- 428
D + I+ YV+VL LH + F+ + T + +DL++SE ++ + + + K+ + K L
Sbjct: 329 SDSMKAKITAYVIVLALHINGFQIDLTMLQRDLKLSEKRMMEIAKAMRLKISKRKVSLAV 388
Query: 429 -------YATLPVPL 436
TL +PL
Sbjct: 389 GGEEEHRLGTLSIPL 403
>gi|156361244|ref|XP_001625428.1| predicted protein [Nematostella vectensis]
gi|156212262|gb|EDO33328.1| predicted protein [Nematostella vectensis]
Length = 407
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/342 (21%), Positives = 147/342 (42%), Gaps = 30/342 (8%)
Query: 96 YRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVP 155
Y +K +R + + + ++Y G ++ + A C Y VGV D ST + +
Sbjct: 44 YYRWADKADRRKKQRRTLVAKSEKMEYNGQNFGQFSRASSLCKYLVGVHDTSTGDMNVYD 103
Query: 156 IAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALN 215
++F L+P++ + A + + + ++ N + L +G+ K + + M +
Sbjct: 104 A---QMFTLQPKILETAAATEQEDSKKDMSYLEKNDR--LTEAFGSNK---KKRAMVSRQ 155
Query: 216 KENDPESQKDLALKMKSVK--INKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILK 273
K E D + + +VK +N E + ++PPY+ NA P Y LD II
Sbjct: 156 KNMIEEDVLDTTV-VNAVKGSLNASFTEMEEPEQSSSIPPYNQNALEPSDVYRLDNIITP 214
Query: 274 GEWDFVQDIFNHVSAGSEVISDAY------PSFVCNRIHKLREIQDDVEKQTLASIFSYI 327
E++ ++ + A D + P ++ + H D ++ + + Y+
Sbjct: 215 PEYETIRGPAKELEASKRDTIDEWRQQSRFPEYILH--HAAVMPMDPEQRAHKSCLLLYL 272
Query: 328 THLVKFKDQHSMDGGASAKQ---HRIPKILHQKFLTSFSDAESKRLSDDKI-----HLLI 379
++++ + ++ A K+ +P ++ K L F+ +R + + L+
Sbjct: 273 SYMITL---YHLNYKAINKKDVLSNVPDMIKNKLLRMFTLENPQRRGNRLVPKRLKDRLL 329
Query: 380 SYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKL 421
SY+LVL L DDF + I K L+M K+ +H LGC +
Sbjct: 330 SYILVLALIIDDFIVDCNSIGKSLKMDPKKVANHMRVLGCSV 371
>gi|388582936|gb|EIM23239.1| RNA polymerase I associated factor, A49-like protein, partial
[Wallemia sebi CBS 633.66]
Length = 402
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 100/222 (45%), Gaps = 32/222 (14%)
Query: 251 VPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDAYPS-----FVCNRI 305
+PPYD + + ++ Y + +I E++ + + + I+ PS ++ R+
Sbjct: 173 LPPYDQSGGSLEEVYKISSLISDPEFNSCKVDKLLTAKDASAIAQLLPSGDSVNYIIERL 232
Query: 306 HKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFSDA 365
L+ ++ + +T + Y+++L F+ ++ P ++ + F++
Sbjct: 233 VALKTVKGNKSSRTKVRLLLYMSYLFAFRTLGRQSRSKVQERTGAPPVIVDGLFSKFTET 292
Query: 366 ESKRLSDDKIHL----LISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKL 421
L++Y+LVLTLH DD +P+ IAK+L M K+ + F+ LGC+L
Sbjct: 293 ARGSTKSSMTPFTQAKLLNYILVLTLHVDDNSVDPSQIAKELSMPVQKINESFKSLGCQL 352
Query: 422 L------REK-NMLY----------------ATLPVPLQFPK 440
+ REK N+L ATL +PL+FP+
Sbjct: 353 VALNLAEREKVNVLNNQRGEESQDASKSARRATLKIPLEFPQ 394
>gi|426193607|gb|EKV43540.1| hypothetical protein AGABI2DRAFT_187943 [Agaricus bisporus var.
bisporus H97]
Length = 422
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 91/411 (22%), Positives = 173/411 (42%), Gaps = 51/411 (12%)
Query: 69 PLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRME-LVVSPRDSSVDYVGTSY 127
PL+ +P+I P +++ KK R+ + ++++ V++V
Sbjct: 29 PLLAIYPAIQPPSSTS-----------FKSYKLKKPRSDSADDIIIAGETEQVEFVTNEE 77
Query: 128 SGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDV-ADKDAGKGEISAE 186
A C Y V + ++ T T+ ++P + + P++ V A K A +
Sbjct: 78 ESRKAAEFGCRYIVALHNKRTGTISLLPSSKS------PQILQRTVKALKSAQPSDAPTT 131
Query: 187 VQ-ANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVKINKEALEST-- 243
Q + L +GTKK+ + + + NK + + + M+ + + L +T
Sbjct: 132 RQYQQARTALGETFGTKKA-KAAIRAQERNKVDVGAMEGVMDYVMEGIDKGAQGLMTTEE 190
Query: 244 ---TSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQ-DIFNHVSAGSEVIS---DA 296
+DT +PP+ +AT P+ YPL KII + EW + F+ S+ E I+ +
Sbjct: 191 AKEAADTNRLIPPFSTSATEPEDIYPLHKIIPETEWKALSLSAFDDTSSDKERIALLPHS 250
Query: 297 YPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHS-MDGGASAKQHRIPKI-- 353
+++ +H +++ + YI+ L F + D A + R+ +
Sbjct: 251 RSNWLNAHMHIWGRPDSGKDRKKNLKLLLYISALFAFHNAAGKRDFNADQTRERLATLPS 310
Query: 354 -----LHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEF 408
L +F D+ S + + LL++ + L L D+F T ++ DL MS+
Sbjct: 311 NVVDGLFSRFTEKARDSTSYQATSTTKTLLLTNLFALCLKVDNFATKVETLSHDLSMSKD 370
Query: 409 KLRDHFEKLGCKLL----REKNML---------YATLPVPLQFPKAIQRRR 446
++ F+ LGCK+ RE+ L +A L P+ FP+ Q+RR
Sbjct: 371 QVNQLFKSLGCKVSKLSDRERAQLGLSDSGDSKFAVLRAPVAFPQLRQKRR 421
>gi|336387463|gb|EGO28608.1| hypothetical protein SERLADRAFT_446040 [Serpula lacrymans var.
lacrymans S7.9]
Length = 440
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 105/430 (24%), Positives = 176/430 (40%), Gaps = 81/430 (18%)
Query: 65 NKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVG 124
++A P++ FPSI KP + P +R K+ + N+ +++V+ +SV++
Sbjct: 44 SQAGPVLVNFPSI-KPPQNTP--FVRYKINNKGSGNDDTAVHADDKIIVAGETNSVEFFS 100
Query: 125 TSYSGEAMAPQFCHYAVGVLDRST--QTLKIVPI-----AANKIFRLEPRVRGSDVADKD 177
+ + A A C Y VGV ++ T TL+ P+ + RLEP
Sbjct: 101 SDETQRASAG--CRYLVGVHNKQTGVTTLRPAPLHILTQQVKALKRLEP----------- 147
Query: 178 AGKGEISAEVQANMKAMLDTRYGTKKSL-----RQSKKMHALNKENDPESQKDLALKMKS 232
+S+ + +A L +GTKK+ R+ K+ A E +D ++ +
Sbjct: 148 ---AAVSSMQRLEARAALGETFGTKKAKAAIKARERNKVDAAAMEGVAGHLQD-RIEQNT 203
Query: 233 VKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEV 292
+ + + T+D+ +PPY+ +A + YPL +I + EW + SA
Sbjct: 204 MALPTQEEAKATADSARLIPPYNPDAFDAEGVYPLHNVIPEVEWRALS-----TSALIAA 258
Query: 293 ISDAYPSFVCNRIHKLREIQDDVEKQTLASIFS-------------YITHLVKFKDQ--H 337
D NR+ L + Q L +FS YI ++ F+
Sbjct: 259 NDDQ------NRVALLPYQRSSWVNQHLRVVFSASTPKKSDIKILLYIAAMLAFRASTFK 312
Query: 338 SMDGGAS-AKQHRIPKILHQKFLTSFSDAESKRLSDDK------IHLLISYVLVLTLHAD 390
+D A K H +P ++ L+ F+ E+ R S D +++Y+ L L D
Sbjct: 313 RIDKQAVHEKLHGVPSVIIDGLLSRFT--ETARGSTDAQTTTQTQTTILTYMFALCLRVD 370
Query: 391 DFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLY--------------ATLPVPL 436
DF T+ T IA DL K+ F LGCK+ + A L +PL
Sbjct: 371 DFSTDTTLIAADLSQPVTKINTLFRSLGCKIEKATQTDLKRLGLPNSASETKRAVLRMPL 430
Query: 437 QFPKAIQRRR 446
FP+A +RR
Sbjct: 431 TFPQARLKRR 440
>gi|336374581|gb|EGO02918.1| hypothetical protein SERLA73DRAFT_165847 [Serpula lacrymans var.
lacrymans S7.3]
Length = 425
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 105/430 (24%), Positives = 176/430 (40%), Gaps = 81/430 (18%)
Query: 65 NKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVG 124
++A P++ FPSI KP + P +R K+ + N+ +++V+ +SV++
Sbjct: 29 SQAGPVLVNFPSI-KPPQNTP--FVRYKINNKGSGNDDTAVHADDKIIVAGETNSVEFFS 85
Query: 125 TSYSGEAMAPQFCHYAVGVLDRST--QTLKIVPI-----AANKIFRLEPRVRGSDVADKD 177
+ + A A C Y VGV ++ T TL+ P+ + RLEP
Sbjct: 86 SDETQRASAG--CRYLVGVHNKQTGVTTLRPAPLHILTQQVKALKRLEP----------- 132
Query: 178 AGKGEISAEVQANMKAMLDTRYGTKKSL-----RQSKKMHALNKENDPESQKDLALKMKS 232
+S+ + +A L +GTKK+ R+ K+ A E +D ++ +
Sbjct: 133 ---AAVSSMQRLEARAALGETFGTKKAKAAIKARERNKVDAAAMEGVAGHLQD-RIEQNT 188
Query: 233 VKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEV 292
+ + + T+D+ +PPY+ +A + YPL +I + EW + SA
Sbjct: 189 MALPTQEEAKATADSARLIPPYNPDAFDAEGVYPLHNVIPEVEWRALS-----TSALIAA 243
Query: 293 ISDAYPSFVCNRIHKLREIQDDVEKQTLASIFS-------------YITHLVKFKDQ--H 337
D NR+ L + Q L +FS YI ++ F+
Sbjct: 244 NDDQ------NRVALLPYQRSSWVNQHLRVVFSASTPKKSDIKILLYIAAMLAFRASTFK 297
Query: 338 SMDGGA-SAKQHRIPKILHQKFLTSFSDAESKRLSDDK------IHLLISYVLVLTLHAD 390
+D A K H +P ++ L+ F+ E+ R S D +++Y+ L L D
Sbjct: 298 RIDKQAVHEKLHGVPSVIIDGLLSRFT--ETARGSTDAQTTTQTQTTILTYMFALCLRVD 355
Query: 391 DFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLY--------------ATLPVPL 436
DF T+ T IA DL K+ F LGCK+ + A L +PL
Sbjct: 356 DFSTDTTLIAADLSQPVTKINTLFRSLGCKIEKATQTDLKRLGLPNSASETKRAVLRMPL 415
Query: 437 QFPKAIQRRR 446
FP+A +RR
Sbjct: 416 TFPQARLKRR 425
>gi|444729446|gb|ELW69862.1| DNA-directed RNA polymerase I subunit RPA49 [Tupaia chinensis]
Length = 418
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 84/373 (22%), Positives = 175/373 (46%), Gaps = 50/373 (13%)
Query: 108 RMELVVSPRDSSVDYVGTSY-SGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEP 166
R + +++ + YVG ++ +G C + VG+L++++ +++ ++F ++P
Sbjct: 58 RSQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDA---ELFNMQP 114
Query: 167 RVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QSKKMHALNKENDPESQK 224
V ++D + + M A ++ +GT K R S++M N+ D +
Sbjct: 115 LFSDESV-ERDLTLESQTKTFREKMDACIEA-FGTTKQKRALNSRRM---NRVGDESLNR 169
Query: 225 DLALKMKSVKINKEALESTTSDTV--------LNVPPYDANATTPQQAYPLDKIILKGEW 276
+A +S+ I+ + + + SD V L +PP A+A P++ Y + E+
Sbjct: 170 AVAKAAESI-IDTKGVNALLSDAVQDEMQDDSLYLPPCYADAAKPEEVYRFED----PEY 224
Query: 277 DFVQ---DIFNHVSAGSEVI----SDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITH 329
+ +Q + F +V++ E++ +++ SFV + L ++ + Q A ++
Sbjct: 225 EALQSPSEAFRNVTS-EEILKMMEENSHCSFVIEALKSLPSNEESRDHQ--ARCIWFLDT 281
Query: 330 LVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDKIHLLIS-YVL 383
L+KF+ Q + SA IP I++ K L +F+ + + L D + I+ YV+
Sbjct: 282 LIKFRAQKVIKR-KSALGPGIPHIINTKLLKNFTCLTYNNGSLRNLISDSMKAKITAYVI 340
Query: 384 VLTLHADDFRTNPTDIAKDLRMSE---------FKLRDHFEKLGCKLLREKNMLYATLPV 434
+L LH +DF+ + T + +DL++SE +L+ K+ RE++ TL +
Sbjct: 341 ILALHINDFQIDLTMLQRDLKLSEKRMIEIAKAMRLKISKRKVSLAAGREEDHKLGTLSI 400
Query: 435 PLQFPKAIQRRRR 447
PL P+ R+ +
Sbjct: 401 PLPPPQTSDRQSK 413
>gi|66472336|ref|NP_001018540.1| DNA-directed RNA polymerase I subunit RPA49 [Danio rerio]
gi|63101130|gb|AAH95836.1| Polymerase (RNA) I polypeptide E [Danio rerio]
gi|157423569|gb|AAI53551.1| Polymerase (RNA) I polypeptide E [Danio rerio]
gi|182889162|gb|AAI64721.1| Polr1e protein [Danio rerio]
Length = 413
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 159/347 (45%), Gaps = 26/347 (7%)
Query: 95 VYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSY-SGEAMAPQFCHYAVGVLDRSTQTLKI 153
V+++ N R +VV+ D + YVG+++ SG + C Y VGVLD+ T +K+
Sbjct: 37 VFKHSNASNPRKKNRRIVVADSDR-LPYVGSNFGSGSLQSNNMCKYFVGVLDKQTMQMKV 95
Query: 154 VPIAANKIFRLEPRVRGSDV-ADKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QSKK 210
+ ++F + P + G A+ + +V A ++A +GT K R S++
Sbjct: 96 ---HSAQLFNMLPVIPGEATEAESENQPSTFRDKVDALIEA-----FGTNKQKRALSSRR 147
Query: 211 MHALNKENDPESQKDLA---LKMKSVK-INKEALES-TTSDTVLNVPPYDANATTPQQAY 265
++A+ E ++ A + K V+ + E +E+ SD L +PP +ANA + Y
Sbjct: 148 LNAVGNETLHQAVAQAASNIIDQKGVEALRNEVIETEAQSDAALFLPPCNANADKLEDVY 207
Query: 266 PLDKIILKGEWDFVQDI-FNHVSAGSEVIS----DAYPSFVCNRIHKLREIQDDVEKQTL 320
P D+++ E++ ++++ + + SE + + P V + L + + D ++Q
Sbjct: 208 PFDQLLTPNEFESLKEVGAKYATLSSEDLQKMRDNHCPQTVLKHLETLSKDEADRDRQCR 267
Query: 321 ASIFSYITHLVKFKDQHSMDGGASAKQHR--IPKILHQKFLTSFSDAESKRLSDDKIHL- 377
+ + + + S G+ R I K+L + SF + + + +
Sbjct: 268 CAWYLSFVIRASLQKRISFKFGSDDGCPRIIINKVLKNFTVESFHNGSLRNTVSMSMRMK 327
Query: 378 LISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLRE 424
+ SY L L LH N T + +D+ +SE K+ + + +G L R+
Sbjct: 328 MASYCLALLLHMGGQTANLTLLHRDMSISENKMLEVAKAMGLTLSRQ 374
>gi|301767080|ref|XP_002918939.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49-like
[Ailuropoda melanoleuca]
Length = 419
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/372 (21%), Positives = 170/372 (45%), Gaps = 49/372 (13%)
Query: 112 VVSPRDSSVDYVGTSY-SGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRG 170
+++ + YVG ++ +G C + VG+L++++ +++ ++F ++P
Sbjct: 59 ILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDA---ELFNMQPLFSD 115
Query: 171 SDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QSKKMHALNKENDPESQKDLAL 228
+ + + + + + M + ++ +GT K R S++M+++ E S
Sbjct: 116 ESIESESTQESQ-TKTFREKMDSCIEA-FGTTKQKRALNSRRMNSVGSE----SLNCAVA 169
Query: 229 KMKSVKINKEALESTTSDTV--------LNVPPYDANATTPQQAYPLDKIILKGEWDFVQ 280
K I+ + + + SD + L +PP A+AT P+ Y + ++ E++ ++
Sbjct: 170 KAAENIIDAKGVTALVSDAIRDDLHDDSLCLPPCHADATKPEDVYKFEDLLSTTEYEALR 229
Query: 281 ---DIFNHVSAGSEVI----SDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKF 333
+ F +VS+ E++ +++ SFV + L ++ ++Q A ++ L+KF
Sbjct: 230 SPSEAFRNVSS-EEILKMIEENSHCSFVIEALKSLPSDEESRDRQ--ARCIWFLDTLIKF 286
Query: 334 KDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDKIHLLIS-YVLVLTL 387
+ Q + SA +P I+ K L F+ + + L D + I+ YV++L L
Sbjct: 287 RAQKVIKR-KSALGPGVPHIISTKLLKHFTCLTYNNGSLRNLISDSMKAKITAYVIILAL 345
Query: 388 HADDFRTNPTDIAKDLRMSE---------FKLRDHFEKLGCKLLREKNMLYATLPVPLQF 438
H DF+ + T + +DL++SE +L+ ++ RE+ TL +PL
Sbjct: 346 HISDFQIDLTVLQRDLKLSERRMIEIAKAMRLKISKRRVSLAAGREEGHKLGTLSIPLPP 405
Query: 439 PKAIQR---RRR 447
++R RRR
Sbjct: 406 APTLERQSKRRR 417
>gi|334332859|ref|XP_001371754.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA49-like
[Monodelphis domestica]
Length = 430
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/365 (21%), Positives = 166/365 (45%), Gaps = 40/365 (10%)
Query: 112 VVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRG 170
+++ + YVG ++ A+ C Y VGVL++++ ++I ++F ++P V
Sbjct: 77 ILAAETDRLSYVGNNFGTGALKCNNLCRYFVGVLNKNSGQMEIYDA---ELFNMQP-VFS 132
Query: 171 SDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QSKKMHALNKEN----DPESQK 224
D+ D + G + + + ++ +GT K R S++M+ + E ++ +
Sbjct: 133 DDLKDSETTLGNQTKSYRDQVDFCIEA-FGTTKQKRALSSRRMNKVGSETLNIAVAKAAE 191
Query: 225 DLALKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQD--- 281
++ + + +A ++ D +PP + P++ Y + +I E+ +QD
Sbjct: 192 NIIDEKGVTALLNDAAQNDLQDESAYLPPCHTDGVKPEEIYKFEDLISPEEYKALQDPSE 251
Query: 282 IFNHVSAGSEVI----SDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQH 337
+ +V++ E++ +Y FV + L ++ + + A ++ L+KF+ Q
Sbjct: 252 VLKNVTS-EEILKMIEEKSYCPFVIEALKSLPLNEESRDHK--ARCLWFLNILIKFRSQS 308
Query: 338 SMDGGASAKQHRIPKILHQKFLTSFSDAESKR------LSDDKIHLLISYVLVLTLHADD 391
+ S +P I++ K L +F+ +SD + +YV+ L LH DD
Sbjct: 309 VIKKKNSLGPE-VPHIINTKLLKNFTSLTYNNGSLRNLISDSMKAKITAYVIALALHIDD 367
Query: 392 FRTNPTDIAKDLRMSE---------FKLRDHFEKLGCKLLREKNMLYATLPVPLQFPKAI 442
F+T+ T + +D+++SE +L+ +KL + E++ TL +PL P
Sbjct: 368 FQTDLTMLQRDMKLSEKRIIEIAKAMRLKISKKKLSLESGGEEHHKIGTLSIPL--PALP 425
Query: 443 QRRRR 447
R+RR
Sbjct: 426 LRKRR 430
>gi|12328816|ref|NP_073722.1| DNA-directed RNA polymerase I subunit RPA49 [Mus musculus]
gi|1381029|dbj|BAA03266.1| RNA polymerase I associated factor (PAF53) [Mus musculus]
gi|74208995|dbj|BAE21232.1| unnamed protein product [Mus musculus]
gi|148670464|gb|EDL02411.1| polymerase (RNA) I polypeptide E, isoform CRA_b [Mus musculus]
Length = 434
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/364 (23%), Positives = 161/364 (44%), Gaps = 58/364 (15%)
Query: 112 VVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKIV--------PIAANKIF 162
+V+ + YVG ++ A+ C + VG+L++++ +++ P+ A+
Sbjct: 74 IVAAETDRLSYVGNNFGTGALKCNALCRHFVGILNKTSGQMEVYDAELFNMQPLFADDAI 133
Query: 163 RLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QSKKMHALNKENDP 220
EP + + +D I A +G+ K R S++M+ + E+
Sbjct: 134 EREPPLENQNKTFRDKLDSCIEA-------------FGSTKQKRSLNSRRMNKVGSESLN 180
Query: 221 ESQKDLALKMKSVK----INKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEW 276
S A + K + +A++ D VL +PP A+A P+ Y + I+ E+
Sbjct: 181 LSVAKAAESIIDTKGVNALVSDAMQDDLQDGVLYLPPCYADAAKPEDVYRFEDILSPAEY 240
Query: 277 DFVQ---DIFNHVSAGSEVI-----SDAYPSFVCNRIHKLREIQ-DDVEKQTLASIFSYI 327
D ++ + F V+ SE I +++ S+V I L+ + D+V + A ++
Sbjct: 241 DALESPSEAFRKVT--SEDILKMIEENSHCSYV---IEMLKSLPIDEVHRNRQARSIWFL 295
Query: 328 THLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDKIHLLI-SY 381
L++F+ Q + G A IP I++ K L F+ + + L + I SY
Sbjct: 296 DALIRFRAQKVIKG-KRALGPGIPHIINTKLLKQFTCLTYNNGRLQNLISSSMRAKITSY 354
Query: 382 VLVLTLHADDFRTNPTDIAKDLRMSE---------FKLRDHFEKLGCKLLREKNMLYATL 432
++L LH ++F+ + T + KDL++SE +L+ +K+ RE++ TL
Sbjct: 355 AIILALHINNFQVDLTALQKDLKLSEKRMIEIAKAMRLKISKQKVSLADGREESHRLGTL 414
Query: 433 PVPL 436
VPL
Sbjct: 415 SVPL 418
>gi|355712713|gb|AES04441.1| polymerase I polypeptide E, 53kDa [Mustela putorius furo]
Length = 419
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/373 (21%), Positives = 176/373 (47%), Gaps = 51/373 (13%)
Query: 112 VVSPRDSSVDYVGTSY-SGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRG 170
+++ + YVG ++ +G C + VG+L++++ +++ ++F ++P
Sbjct: 59 ILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDA---ELFNMQPLFSD 115
Query: 171 SDVADKDAGKGEISAEVQA-NMKAMLDT---RYGTKKSLR--QSKKMH-----ALNKEND 219
+ + E++ E Q + + +D+ +GT K R S++M+ +LN
Sbjct: 116 ESI------ESELTQESQTKSFREKMDSCIEAFGTTKQKRAXNSRRMNKVGSESLNCAVA 169
Query: 220 PESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFV 279
++ + K + +N +A+ D L +PP A+A P+ Y + ++ E++ +
Sbjct: 170 KAAENIIDAKGVTALVN-DAIHDDLQDDSLYLPPCHADAAKPEDVYKFEDLLSTAEYEAL 228
Query: 280 Q---DIFNHVSAGSEVI----SDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVK 332
Q + F +VS+ E++ +++ SFV + L ++ ++Q A ++ L+K
Sbjct: 229 QSPSEAFRNVSS-EEILKMIEENSHCSFVIEALKSLPSDEESRDRQ--ARCIWFLDTLIK 285
Query: 333 FKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDKIHLLIS-YVLVLT 386
F+ Q + SA +P I++ K L F+ + + L D + I+ YV++L
Sbjct: 286 FRAQKVIKR-KSALGPGVPHIINSKLLKHFTCLTYNNGSLRNLISDSMKAKITAYVIILA 344
Query: 387 LHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLL---------REKNMLYATLPVPL- 436
LH +F+ + T + +DL++SE ++ + + + K+ RE++ TL +PL
Sbjct: 345 LHISNFQIDLTVLQRDLKLSERRMMEIAKAMRLKISKRRVSLAAGREEDHKMGTLSIPLP 404
Query: 437 --QFPKAIQRRRR 447
Q + +RRR
Sbjct: 405 PAQTSERQSKRRR 417
>gi|320163250|gb|EFW40149.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 425
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 93/423 (21%), Positives = 181/423 (42%), Gaps = 60/423 (14%)
Query: 73 YFPS-IYKPDVDHPDEEMRPKVRVY----RNMNEKKNRTGRMELVVSPRDSSVDYVGTSY 127
+FPS P+ P E ++ V+ R+ + R + VV+ + + Y +S
Sbjct: 14 HFPSGTPAPEALRPGNEDSLRLAVFTQAQRDRDAATASGSRPKHVVAAENGRMLYNSSSE 73
Query: 128 SGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEP---RVRGSDVADKDAGKGEIS 184
S + M Y VGV DR TL + + +F L+P R+R + K +G
Sbjct: 74 SSQPM----TKYLVGVFDRKKHTLDVYD---SDMFALKPTVKRMRSDALNKKQEAEGLSK 126
Query: 185 AEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVKINKEALESTT 244
+ K L +G +K ++++ + + + + S +A ++S ++ A + T
Sbjct: 127 YQQYTQKKNDLVEAFGGRK--KKNELLTNIKNKIEDASLGSMAKNIQST-LDTAAKDDLT 183
Query: 245 SDTVLN-------VPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVS-AGSEVI--- 293
+ V++ +P ++A+A +P + YPL+ +I E+ +++ + A +E I
Sbjct: 184 LNEVMDQADEHRPIPAFNADALSPDEVYPLENLITPEEYKVLKNEAKVLEKANAEEIQAM 243
Query: 294 --SDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFK---DQHSMDGGASAKQ- 347
+ Y + N + L QD E++ A I YI +L+ F+ D H + ++
Sbjct: 244 RAARTYAPLILNWVRDLP--QDKEERRRQARILLYINYLLNFRRANDSHLNNPNSTEPNA 301
Query: 348 -HRIPKILHQKFLTSFSDAESKRLSDDKIHL-------LISYVLVLTLHADDFRTNPTDI 399
IP+ + + F++ ++ + L+SYV VL L + ++ ++
Sbjct: 302 LSGIPEDVLKHLKAKFAEVQTNDRGQPIFAVPTFLKDKLLSYVFVLCLMLNQYKFAFEEL 361
Query: 400 AKDLRMSEFKLRDHFEKLGCKLLREKNML---------------YATLPVPLQFPKAIQR 444
L+M + +HF LGC++ + + A L VPLQFP+ R
Sbjct: 362 TTMLKMKPDRATEHFRALGCRISSRREEMGDEMDTSASATGSVKLAVLGVPLQFPRPRGR 421
Query: 445 RRR 447
R +
Sbjct: 422 RSK 424
>gi|348678761|gb|EGZ18578.1| hypothetical protein PHYSODRAFT_500692 [Phytophthora sojae]
Length = 429
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 89/398 (22%), Positives = 170/398 (42%), Gaps = 81/398 (20%)
Query: 103 KNRTGRMELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIF 162
+N T + LVV+ + V Y G ++ + F YAVGV DR+T+ +++ + N+I+
Sbjct: 44 ENPTKKQRLVVASSEK-VAYQGANFGYLGSSHDFASYAVGVYDRNTKEVRLCNV--NQIY 100
Query: 163 RLEPRVR-GSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--------------- 206
++ ++ S+ D + G+ + E + ++ + +G+KKS R
Sbjct: 101 VMQQAIKNASENVDDNRGEDKSFMEQRRDLVEV----FGSKKSKRIQKNREENIVDLEHI 156
Query: 207 ---------QSKKMHALNKENDPESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDAN 257
KK+ A K+ + E +D ++ AL +T ++ +PP D +
Sbjct: 157 SGAASVTQTLQKKISAAKKQLEEERARDGTFSKEAA-----ALAATRNEL---LPPCDID 208
Query: 258 ATTPQQAYPLDKIILKGEWD----FVQDIFNHVSAGSEVISDAYPSFVC--NRIHKLREI 311
A TP + Y L K + D +++ + + S A S R+
Sbjct: 209 APTPDRVYDLTKFMNSSVMDSLTIMAEEVIEALQSTSVAEYAAKQSLAALPTRMMLSLAA 268
Query: 312 QDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFSD------- 364
DV K L +Y+ + A +++ IP ++ + FL F+D
Sbjct: 269 PYDVNKMCLVVYLAYLIDFYHSRFPLHKSAAAFSEEKGIPLVIVRHFLKLFTDIGEGTNG 328
Query: 365 ------AESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLG 418
A++K+ DK+ L +++V+ L + F + T++A DL+ + +++ + +LG
Sbjct: 329 HPTYFQAKAKK---DKLCL---FLIVVALTLNGFTLDLTEVAADLKRTPIQMQSYAIQLG 382
Query: 419 CKLLR----------------EKNMLYATLPVPLQFPK 440
C + + +KN+L A L VPL FPK
Sbjct: 383 CVVEKAKAETAIYGGASSVGSKKNILRAVLSVPLHFPK 420
>gi|409074526|gb|EKM74922.1| hypothetical protein AGABI1DRAFT_103237 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 422
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 90/411 (21%), Positives = 173/411 (42%), Gaps = 51/411 (12%)
Query: 69 PLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRME-LVVSPRDSSVDYVGTSY 127
PL+ +P+I P +++ KK R+ + ++++ V++V
Sbjct: 29 PLLAIYPAIQPPSSTS-----------FKSYKLKKPRSDSADDIIIAGETEQVEFVTHEE 77
Query: 128 SGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDV-ADKDAGKGEISAE 186
A C Y V + ++ T T+ ++P + + P++ V A K A +
Sbjct: 78 ESRKAAEFGCRYIVALHNKRTGTISLLPSSKS------PQILQRTVKALKSAQPSDAPTT 131
Query: 187 VQ-ANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVKINKEALEST-- 243
Q + L +GTKK+ + + + NK + + + M+ + + L +T
Sbjct: 132 RQYQQARTALGETFGTKKA-KAAIRAQERNKVDVGAMEGVMDYVMEGIDKGAQGLMTTEE 190
Query: 244 ---TSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQ-DIFNHVSAGSEVIS---DA 296
+DT +PP+ +AT P+ YPL KII + EW + F+ S+ E I+ +
Sbjct: 191 AKEAADTNRLIPPFSTSATEPEDIYPLHKIIPETEWKALSLSAFDDTSSDKERIALLPHS 250
Query: 297 YPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHS-MDGGASAKQHRIPKI-- 353
+++ +H +++ + YI+ L F + D A + R+ +
Sbjct: 251 RSNWLNAHMHVWGRPDSGKDRKKNLKLLLYISALFAFHNAAGKRDFNADQTRERLATLPS 310
Query: 354 -----LHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEF 408
L +F D+ S + + LL++ + L L D+F T ++ DL +S+
Sbjct: 311 NVVDGLFSRFTEKARDSTSYQATSTTKTLLLTNLFALCLKVDNFATKVETLSHDLSISKD 370
Query: 409 KLRDHFEKLGCKLL----REKNML---------YATLPVPLQFPKAIQRRR 446
++ F+ LGCK+ RE+ L +A L P+ FP+ Q+RR
Sbjct: 371 QVNQLFKSLGCKVSKLSDRERAQLGLSDSGDSKFAVLRAPVAFPQLRQKRR 421
>gi|297684019|ref|XP_002819654.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Pongo
abelii]
Length = 418
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 157/326 (48%), Gaps = 41/326 (12%)
Query: 108 RMELVVSPRDSSVDYVGTSY-SGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEP 166
R + +++ + YVG ++ +G C + VG+L++++ +++ ++F ++P
Sbjct: 55 RNQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDA---ELFNMQP 111
Query: 167 RVRGSDVADKDAGKGEISAEVQAN-----MKAMLDTRYGTKKSLR--QSKKMHALNKEND 219
SDV+ + E++ E Q M + ++ +GT K R +++M+ + E+
Sbjct: 112 LF--SDVS----VESELALESQTKTYREKMDSCIEA-FGTTKQKRALNTRRMNRVGNESL 164
Query: 220 PESQKDLALKMKSVK----INKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGE 275
+ A + K + +A+ + D L +PP +AT P+ Y + ++ E
Sbjct: 165 NRAVAKAAETIIDTKGVTALVSDAIHNDLQDDSLYLPPCYDDATKPEDVYKFEDLLSPAE 224
Query: 276 WDFVQ---DIFNHVSAGSEVI----SDAYPSFVCNRIHKLREIQDDVE-KQTLASIFSYI 327
++ +Q + F +V++ E++ ++Y +FV I L+ + DVE + A ++
Sbjct: 225 YEALQSPSEAFRNVTS-EEILKMIEENSYCTFV---IEALKSLPSDVESRDRQARCIWFL 280
Query: 328 THLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDKIHL-LISY 381
L+KF+ Q + SA +P I++ K L F+ + + L D + + +Y
Sbjct: 281 DTLIKFRAQRVVKR-KSALGPGVPHIINTKLLKHFTCLTYNNGRLRNLISDSMKAKVTAY 339
Query: 382 VLVLTLHADDFRTNPTDIAKDLRMSE 407
V+ L LH DF+ + T + +DL++SE
Sbjct: 340 VITLALHIHDFQIDLTMLQRDLKLSE 365
>gi|297847986|ref|XP_002891874.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337716|gb|EFH68133.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 122
Score = 68.9 bits (167), Expect = 5e-09, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 233 VKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEV 292
+ IN AL ST+S +PPYDA+A TP++AYPLDKII K EWDFVQ S
Sbjct: 3 LDINGGALTSTSSIVARKIPPYDASANTPREAYPLDKIIEKEEWDFVQQ-------ESVA 55
Query: 293 ISDAYPSFVCNRIHKLREIQDDVEK 317
+++AYP +I ++ I + K
Sbjct: 56 VTNAYPYICTQQIAQVARISRTIPK 80
>gi|149740916|ref|XP_001504331.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Equus
caballus]
Length = 419
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 84/385 (21%), Positives = 179/385 (46%), Gaps = 51/385 (13%)
Query: 100 NEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKIVPIAA 158
N+ N R + +++ + YVG ++ A+ C + VG+L++++ +++
Sbjct: 47 NDSTNPRKRSQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQIEVYDA-- 104
Query: 159 NKIFRLEPRVRGSDVADKDAGKGEISAEVQA-NMKAMLDT---RYGTKKSLR--QSKKMH 212
++F ++P V + E++ E Q + +D+ +GT K R S++M+
Sbjct: 105 -ELFNMQPLFSDESV------ESELTLESQTKTFREKMDSCIEAFGTTKQKRALNSRRMN 157
Query: 213 ALNKENDPESQKDLALKMKSVK----INKEALESTTSDTVLNVPPYDANATTPQQAYPLD 268
+ E+ + A + K + +A+ + D L +P A+A P+ Y +
Sbjct: 158 RVGNESLNRAVAKAAENIIDTKGVTALVSDAIHDDSQDDSLYLPHCHADAAKPEDVYKFE 217
Query: 269 KIILKGEWDFVQ---DIFNHVSAGSEVI-----SDAYPSFVCNRIHKLREIQDDVEKQTL 320
++ E++ +Q + F +V+ SE I +++ SFV + L ++ ++Q
Sbjct: 218 DLLSPAEYEALQSPSEAFRNVT--SEDILKMIEENSHCSFVIEALKSLPSNEESRDRQ-- 273
Query: 321 ASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDKI 375
A ++ L+KF+ Q + SA +P +++ K L F+ + + L D +
Sbjct: 274 ARCIWFLDTLIKFRAQKVIKR-KSALGPGVPHVINTKLLKHFTCLTYNNGSLRNLISDSM 332
Query: 376 HLLIS-YVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLR---------EK 425
I+ YV++L LH +DF+ + T + +DL++SE ++ + + + K+ + E+
Sbjct: 333 KAKITAYVILLALHINDFQIDLTMLQRDLKLSERRMIEIAKAMRLKVSKRRVSGAAGGEE 392
Query: 426 NMLYATLPVPLQFPKAIQR---RRR 447
+ TL +PL +A+ R RRR
Sbjct: 393 DHKLGTLSIPLPPAQALDRQSKRRR 417
>gi|348570284|ref|XP_003470927.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49-like [Cavia
porcellus]
Length = 418
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 79/370 (21%), Positives = 169/370 (45%), Gaps = 42/370 (11%)
Query: 98 NMNEKKNRTGRMELVVSPRDSSVDYVGTSY-SGEAMAPQFCHYAVGVLDRSTQTLKIVPI 156
N + N R + +++ + YVG ++ +G C + VG+L++++ +++
Sbjct: 45 NSTDSANPRKRSQRILAAETDRLSYVGNNFGTGALKCNSLCRHFVGILNKTSGQMEVYDA 104
Query: 157 AANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QSKKMHAL 214
++F ++P + + + + + + M + ++ +GT K R S++M+ +
Sbjct: 105 ---ELFNMQPLFADESIESEPILENQ-TKTFREKMDSCIEA-FGTTKQKRALNSRRMNKV 159
Query: 215 NKENDPESQKDLAL-KMKSVKINKEALESTTSDTV--------LNVPPYDANATTPQQAY 265
E+ +LA+ K I+ + +E+ SD L +PP A+AT P+ Y
Sbjct: 160 GSES-----LNLAVAKAADEIIHAKGVEALVSDATQDDMQDDSLYLPPCYADATKPEDVY 214
Query: 266 PLDKIILKGEWDFVQ---DIFNHVSAGSEVISDAYPSFVCNRIHKLREIQDDVE-KQTLA 321
+ I+ E+D ++ + F V++ + S C I L+ + + E + A
Sbjct: 215 KFEDILSPAEYDALKAPSEAFRKVTSEEILKMIEENSHCCFVIEALKSLPSNEESRDHQA 274
Query: 322 SIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDKIH 376
++ L++F+ Q + SA IP I++ K L F+ + + L + +
Sbjct: 275 RCIWFLDTLIRFRAQKVIKR-KSALGPGIPHIINTKLLKHFTCLTYNNGSLRNLISNSMK 333
Query: 377 LLIS-YVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLL---------REKN 426
I+ YV++L LH DF+ + T + +DL++SE ++ + + + K+ RE++
Sbjct: 334 AKITAYVIILALHISDFQIDLTVLQRDLKLSEKRMTEIAKAMRLKISKRKVSLAPGREED 393
Query: 427 MLYATLPVPL 436
TL +PL
Sbjct: 394 HKLGTLSIPL 403
>gi|291382959|ref|XP_002708024.1| PREDICTED: RNA polymerase I associated factor 53 [Oryctolagus
cuniculus]
Length = 419
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 87/377 (23%), Positives = 175/377 (46%), Gaps = 52/377 (13%)
Query: 108 RMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEP 166
R + +++ + YVG ++ A+ C + VG+L++++ +++ ++F ++P
Sbjct: 55 RSQRILAAETERLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDA---ELFNMQP 111
Query: 167 RVRGSDVADKDAGKGEISAEVQ-ANMKAMLDT---RYGTKKSLR--QSKKMHALNKENDP 220
+ D+ + E++ E Q + +D+ +GT K R S++M+ + E+
Sbjct: 112 ------LFSDDSVESELAPESQNKTFREKMDSCIEAFGTTKQKRALNSRRMNRVGNESLN 165
Query: 221 ESQKDLALKMKSVKINKEALESTTSDTV-----LNVPPYDANATTPQQAYPLDKIILKGE 275
+ A + K AL S + L +PP A+A TP Y D ++ E
Sbjct: 166 HAVAKAAENIIDTK-GVNALVSDAAQDDLQDDSLYLPPCHADAATPGDVYRFDDLLSPAE 224
Query: 276 WDFVQ---DIFNHVSAGSEVI----SDAYPSFVCNRIHKLREI-QDDVEKQTLASIFSYI 327
++ ++ + F V++ E++ +++ SFV I L+ + D+ + A ++
Sbjct: 225 YEALKGPAEAFRSVTS-EEILKMAEENSHCSFV---IEALKCLPTDEKSRDRQARCLWFL 280
Query: 328 THLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDKIHLLIS-Y 381
LVKF+ Q + SA IP ++ K L F+ + + L + + I+ Y
Sbjct: 281 DTLVKFRAQKVIKR-KSALGPGIPHVISTKLLKQFTCLTYNNGSLRNLISNSMKAKITAY 339
Query: 382 VLVLTLHADDFRTNPTDIAKDLRMSE---------FKLRDHFEKLGCKLLREKNMLYATL 432
V++L LH +DF+ + T + +DL++SE +L+ +K+ RE++ TL
Sbjct: 340 VIILALHINDFQVDLTVLQRDLKLSERRMMEIAKAMRLKISKKKVCVAAGREEDRRVGTL 399
Query: 433 PVPLQFPKA--IQRRRR 447
VPL +A +Q +RR
Sbjct: 400 SVPLPPAQASDLQAKRR 416
>gi|440804140|gb|ELR25018.1| RNA polymerase [Acanthamoeba castellanii str. Neff]
Length = 546
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 101/464 (21%), Positives = 192/464 (41%), Gaps = 84/464 (18%)
Query: 3 EDEETRSKKEHESQQEQETEGPKKKNKKRKKDKANTTIDEQPEPELEPERVKAKVQFIPE 62
E+ ++ K++ + Q + +G K+K K D+A+ D + +R + +
Sbjct: 70 EEPASKPKRKFDEQTKPTGKG-KEKAHKSGNDEASLATDRR-------KRQRLSITSEKN 121
Query: 63 QPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDY 122
+P AP L FP+ P ++E + M E K T +++V+ D +
Sbjct: 122 RPAVAPSLA-CFPNAPPPLASLHNKEGG----IAFGMWENKGITRTKKMLVAETDKML-- 174
Query: 123 VGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRG------SDVADK 176
Y G+ + Y + +DR+T +VPIA + ++ +++G +D D
Sbjct: 175 ----YLGQPVVRNPSKYYIMAVDRTTNKATMVPIA--NFYHMQQQIKGYTPTLPTDAEDD 228
Query: 177 DAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVKIN 236
+ G + + L R+G+KK Q A S D + ++
Sbjct: 229 ERSFG--------DQRRSLIERFGSKKKRSQVHSTLANKIVTGSVSHADDIM----TSLD 276
Query: 237 KEALESTTSDTVLN---VPP------YDANATTPQ-------QAYPLDKIILKGEWDFVQ 280
++A + TSD +N PP + A PQ + YPL +I +DF+
Sbjct: 277 EKAAQKATSDGQINTEVCPPRLVRWLAVSRAAAPQRFTDTVSEIYPLGDVI---PFDFLG 333
Query: 281 DI--------------FNHVSAGSEVISDAYPSFVCNRIHKLREI-QDDVEKQTLASIFS 325
I F+ + + Y S++ R+ LR++ ++E+Q + S
Sbjct: 334 QIDPKPLIQAAKDPAQFSATAKKTLSTVGRYGSYIAERVKGLRDLLPGELERQ--GRLLS 391
Query: 326 YITHLVKF----KDQHS--MDGGASAKQHRI-PKILHQKFLTSFSDAESKRLSDDKIHL- 377
I L+K KD+ M G A H + P+ + + FL F+D E +R + +
Sbjct: 392 LIGALLKLRSFIKDKRGAFMLGDAKDAVHGVLPEEVVRHFLPLFADGEGRRFRASTLGMT 451
Query: 378 -LISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCK 420
+ +Y+++L LHA +FR + ++ L + K + + +GC+
Sbjct: 452 RMTTYIVILLLHASEFRLDVATLSTALELESKKCQQYLISIGCR 495
>gi|15680034|gb|AAH14331.1| Polymerase (RNA) I polypeptide E, 53kDa [Homo sapiens]
Length = 419
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/364 (21%), Positives = 173/364 (47%), Gaps = 50/364 (13%)
Query: 108 RMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEP 166
R + +++ + YVG ++ A+ C + VG+L++++ +++ ++F ++P
Sbjct: 55 RNQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDA---ELFNMQP 111
Query: 167 RVRGSDVADKDAGKGEISAEVQAN-----MKAMLDTRYGTKKSLR--QSKKMHALNKEND 219
SDV+ + E++ E Q M + ++ +GT K R +++M+ + E+
Sbjct: 112 LF--SDVS----VESELALESQTKTYREKMDSCIEA-FGTTKQKRALNTRRMNRVGNESL 164
Query: 220 PESQKDLALKMKSVK----INKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGE 275
+ A + K + +A+ + D L +PP +A P+ Y + ++ E
Sbjct: 165 NRAVAKAAETIIDTKGVTALVSDAIHNDLQDDSLYLPPCYDDAAKPEDVYKFEDLLSPAE 224
Query: 276 WDFVQ---DIFNHVSAGSEVI----SDAYPSFVCNRIHKLREIQDDVE-KQTLASIFSYI 327
++ +Q + F +V++ E++ +++ +FV I L+ + DVE + A ++
Sbjct: 225 YEALQSPSEAFRNVTS-EEILKMIEENSHCTFV---IEALKSLPSDVESRDRQARCIWFL 280
Query: 328 THLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDKIHLLIS-Y 381
L+KF+ H + SA +P I++ K L F+ + + L D + I+ Y
Sbjct: 281 DTLIKFR-AHRVVKRKSALGPGVPHIINTKLLKHFTCLTYNNGRLRNLISDSMKAKITAY 339
Query: 382 VLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYA---------TL 432
V++L LH DF+ + T + +DL++SE ++ + + + K+ + K + A TL
Sbjct: 340 VIILALHIHDFQIDLTVLQRDLKLSEKRMMEIAKAMRLKISKRKVSVAAGSEEDHKLGTL 399
Query: 433 PVPL 436
+PL
Sbjct: 400 SLPL 403
>gi|11968047|ref|NP_071935.1| DNA-directed RNA polymerase I subunit RPA49 [Homo sapiens]
gi|10435392|dbj|BAB14579.1| unnamed protein product [Homo sapiens]
gi|10436294|dbj|BAB14791.1| unnamed protein product [Homo sapiens]
gi|12654979|gb|AAH01337.1| Polymerase (RNA) I polypeptide E, 53kDa [Homo sapiens]
gi|48146743|emb|CAG33594.1| PAF53 [Homo sapiens]
gi|119578684|gb|EAW58280.1| polymerase (RNA) I polypeptide E, 53kDa, isoform CRA_a [Homo
sapiens]
gi|343960813|dbj|BAK61996.1| DNA-directed RNA polymerase I-associated factor 53 kDa subunit [Pan
troglodytes]
Length = 419
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 157/326 (48%), Gaps = 41/326 (12%)
Query: 108 RMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEP 166
R + +++ + YVG ++ A+ C + VG+L++++ +++ ++F ++P
Sbjct: 55 RNQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDA---ELFNMQP 111
Query: 167 RVRGSDVADKDAGKGEISAEVQAN-----MKAMLDTRYGTKKSLR--QSKKMHALNKEND 219
SDV+ + E++ E Q M + ++ +GT K R +++M+ + E+
Sbjct: 112 LF--SDVS----VESELALESQTKTYREKMDSCIEA-FGTTKQKRALNTRRMNRVGNESL 164
Query: 220 PESQKDLALKMKSVK----INKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGE 275
+ A + K + +A+ + D L +PP +A P+ Y + ++ E
Sbjct: 165 NRAVAKAAETIIDTKGVTALVSDAIHNDLQDDSLYLPPCYDDAAKPEDVYKFEDLLSPAE 224
Query: 276 WDFVQ---DIFNHVSAGSEVI----SDAYPSFVCNRIHKLREIQDDVE-KQTLASIFSYI 327
++ +Q + F +V++ E++ +++ +FV I L+ + DVE + A ++
Sbjct: 225 YEALQSPSEAFRNVTS-EEILKMIEENSHCTFV---IEALKSLPSDVESRDRQARCIWFL 280
Query: 328 THLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDKIHLLIS-Y 381
L+KF+ H + SA +P I++ K L F+ + + L D + I+ Y
Sbjct: 281 DTLIKFR-AHRVVKRKSALGPGVPHIINTKLLKHFTCLTYNNGRLRNLISDSMKAKITAY 339
Query: 382 VLVLTLHADDFRTNPTDIAKDLRMSE 407
V++L LH DF+ + T + +DL++SE
Sbjct: 340 VIILALHIHDFQIDLTVLQRDLKLSE 365
>gi|426361802|ref|XP_004048088.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Gorilla
gorilla gorilla]
Length = 419
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 157/326 (48%), Gaps = 41/326 (12%)
Query: 108 RMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEP 166
R + +++ + YVG ++ A+ C + VG+L++++ +++ ++F ++P
Sbjct: 55 RNQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDA---ELFNMQP 111
Query: 167 RVRGSDVADKDAGKGEISAEVQAN-----MKAMLDTRYGTKKSLR--QSKKMHALNKEND 219
SDV+ + E++ E Q M + ++ +GT K R +++M+ + E+
Sbjct: 112 LF--SDVS----VESELALESQTKTYREKMDSCIEA-FGTTKQKRALNTRRMNRVGNESL 164
Query: 220 PESQKDLALKMKSVK----INKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGE 275
+ A + K + +A+ + D L +PP +A P+ Y + ++ E
Sbjct: 165 NRAVAKAAETIIDTKGVTALVSDAIHNDLQDDSLYLPPCYDDAAKPEDVYKFEDLLSPAE 224
Query: 276 WDFVQ---DIFNHVSAGSEVI----SDAYPSFVCNRIHKLREIQDDVE-KQTLASIFSYI 327
++ +Q + F +V++ E++ +++ +FV I L+ + DVE + A ++
Sbjct: 225 YEALQSPSEAFRNVTS-EEILKMIEENSHCTFV---IEALKSLPSDVESRDRQARCIWFL 280
Query: 328 THLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDKIHLLIS-Y 381
L+KF+ H + SA +P I++ K L F+ + + L D + I+ Y
Sbjct: 281 DTLIKFR-AHRVVKRKSALGPGVPHIINTKLLKHFTCLTYNNGRLRNLISDSMKAKITAY 339
Query: 382 VLVLTLHADDFRTNPTDIAKDLRMSE 407
V++L LH DF+ + T + +DL++SE
Sbjct: 340 VIILALHIHDFQIDLTVLQRDLKLSE 365
>gi|114624561|ref|XP_001169824.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 isoform 5
[Pan troglodytes]
gi|397466883|ref|XP_003805170.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Pan
paniscus]
gi|410207684|gb|JAA01061.1| polymerase (RNA) I polypeptide E, 53kDa [Pan troglodytes]
gi|410207686|gb|JAA01062.1| polymerase (RNA) I polypeptide E, 53kDa [Pan troglodytes]
gi|410207688|gb|JAA01063.1| polymerase (RNA) I polypeptide E, 53kDa [Pan troglodytes]
gi|410207690|gb|JAA01064.1| polymerase (RNA) I polypeptide E, 53kDa [Pan troglodytes]
gi|410268170|gb|JAA22051.1| polymerase (RNA) I polypeptide E, 53kDa [Pan troglodytes]
gi|410291370|gb|JAA24285.1| polymerase (RNA) I polypeptide E, 53kDa [Pan troglodytes]
gi|410291372|gb|JAA24286.1| polymerase (RNA) I polypeptide E, 53kDa [Pan troglodytes]
gi|410291374|gb|JAA24287.1| polymerase (RNA) I polypeptide E, 53kDa [Pan troglodytes]
gi|410336901|gb|JAA37397.1| polymerase (RNA) I polypeptide E, 53kDa [Pan troglodytes]
Length = 419
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 157/326 (48%), Gaps = 41/326 (12%)
Query: 108 RMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEP 166
R + +++ + YVG ++ A+ C + VG+L++++ +++ ++F ++P
Sbjct: 55 RNQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDA---ELFNMQP 111
Query: 167 RVRGSDVADKDAGKGEISAEVQAN-----MKAMLDTRYGTKKSLR--QSKKMHALNKEND 219
SDV+ + E++ E Q M + ++ +GT K R +++M+ + E+
Sbjct: 112 LF--SDVS----VESELALESQTKTYREKMDSCIEA-FGTTKQKRALNTRRMNRVGNESL 164
Query: 220 PESQKDLALKMKSVK----INKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGE 275
+ A + K + +A+ + D L +PP +A P+ Y + ++ E
Sbjct: 165 NRAVAKAAETIIDTKGVTALVSDAIHNDLQDDSLYLPPCYDDAAKPEDVYKFEDLLSPAE 224
Query: 276 WDFVQ---DIFNHVSAGSEVI----SDAYPSFVCNRIHKLREIQDDVE-KQTLASIFSYI 327
++ +Q + F +V++ E++ +++ +FV I L+ + DVE + A ++
Sbjct: 225 YEALQSPSEAFRNVTS-EEILKMIEENSHCTFV---IEALKSLPSDVESRDRQARCIWFL 280
Query: 328 THLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDKIHLLIS-Y 381
L+KF+ H + SA +P I++ K L F+ + + L D + I+ Y
Sbjct: 281 DTLIKFR-AHRVVKRKSALGPGVPHIINTKLLKHFTCLTYNNGRLRNLISDSMKAKITAY 339
Query: 382 VLVLTLHADDFRTNPTDIAKDLRMSE 407
V++L LH DF+ + T + +DL++SE
Sbjct: 340 VIILALHIHDFQIDLTMLQRDLKLSE 365
>gi|187607531|ref|NP_001120306.1| polymerase (RNA) I polypeptide E, 53kDa [Xenopus (Silurana)
tropicalis]
gi|169642467|gb|AAI60809.1| LOC100145368 protein [Xenopus (Silurana) tropicalis]
Length = 419
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/366 (21%), Positives = 161/366 (43%), Gaps = 59/366 (16%)
Query: 95 VYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKI 153
+Y N ++ + R ++ + D + YV +++ +A+ + C Y VGVL++ T +++
Sbjct: 39 LYSNKDDNNPKAKRQRILAAETDR-LSYVANNFTSDAVKSNSLCRYFVGVLNKETGKMEV 97
Query: 154 VPIAANKIFRLEPRVRGS--------DVADKDAGKGEISAEVQANMKAMLDTRYGTKKSL 205
++ +R++P + + DV D+ S + + A++++ +GT K
Sbjct: 98 YD---SEQYRMQPILESNKEKELHTEDVMDQP------SKSYREKVDALIES-FGTNKQK 147
Query: 206 R--QSKKMHALNKENDPESQKDLA---LKMKSVK-INKEALESTTSDTVLNVPPYDANAT 259
R S+K++ + E ++ A ++ + K + K+A++ +T L +PP D NA
Sbjct: 148 RALSSRKLNQVGSEILNKAMAKAAEEIIESRGTKELVKDAVDKKQQETSLFLPPCDYNAN 207
Query: 260 TPQQAYPLDKIILKGEW----------------DFVQDIFNHVSAGSEVISDAYPSFVCN 303
P+ AY D +I E+ D +Q + N S FV
Sbjct: 208 KPENAYKFDDLISPVEYAALETASAAFRNMTSEDLLQMVENKKSG----------LFVLQ 257
Query: 304 RIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS 363
+ LREI+D+ A Y+ L+K ++ P I+ K + +F+
Sbjct: 258 ELQGLREIKDEKALDHQARCLWYLDALIKLSQLRTVK-RKDIMTPECPGIICGKLMKNFT 316
Query: 364 DAESKR------LSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKL 417
K +S +++YV+ + LH DF+ + T + D+++ E ++ + + +
Sbjct: 317 VEVFKNGRIQNSISGTTKTKIVAYVIAIALHISDFQVDLTLLQSDMKLQESRILEIAKAM 376
Query: 418 GCKLLR 423
G K+ +
Sbjct: 377 GLKIAK 382
>gi|402896935|ref|XP_003911534.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 isoform 1
[Papio anubis]
gi|380785747|gb|AFE64749.1| DNA-directed RNA polymerase I subunit RPA49 [Macaca mulatta]
gi|380785749|gb|AFE64750.1| DNA-directed RNA polymerase I subunit RPA49 [Macaca mulatta]
gi|380808478|gb|AFE76114.1| DNA-directed RNA polymerase I subunit RPA49 [Macaca mulatta]
gi|383420781|gb|AFH33604.1| DNA-directed RNA polymerase I subunit RPA49 [Macaca mulatta]
gi|383420783|gb|AFH33605.1| DNA-directed RNA polymerase I subunit RPA49 [Macaca mulatta]
gi|383420785|gb|AFH33606.1| DNA-directed RNA polymerase I subunit RPA49 [Macaca mulatta]
gi|383420787|gb|AFH33607.1| DNA-directed RNA polymerase I subunit RPA49 [Macaca mulatta]
gi|384944220|gb|AFI35715.1| DNA-directed RNA polymerase I subunit RPA49 [Macaca mulatta]
gi|384944222|gb|AFI35716.1| DNA-directed RNA polymerase I subunit RPA49 [Macaca mulatta]
Length = 419
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 156/322 (48%), Gaps = 33/322 (10%)
Query: 108 RMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEP 166
R + +++ + YVG ++ A+ C + VG+L++++ +++ ++F ++P
Sbjct: 55 RNQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDA---ELFNMQP 111
Query: 167 RVRGSDVA-DKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QSKKMHALNKENDPESQ 223
SDV+ + + + + M + ++ +GT K R +++M+ + E+ ++
Sbjct: 112 LF--SDVSVESELALDSQTKTYREKMDSCIEA-FGTTKQKRALNARRMNRVGNESLNQAV 168
Query: 224 KDLALKMKSVK----INKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFV 279
A + K + +A+ + D L +PP +AT P+ Y + ++ E++ +
Sbjct: 169 AKAAETIIDTKGVTALVSDAIHNDLQDDSLYLPPCYDDATKPEDVYKFEDLLSPAEYEAL 228
Query: 280 Q---DIFNHVSAGSEVI----SDAYPSFVCNRIHKLREIQDDVE-KQTLASIFSYITHLV 331
Q + F +V++ E++ +++ +FV I L+ + DVE + A ++ L+
Sbjct: 229 QSPSEAFRNVTS-EEILKMIEENSHCTFV---IEALKSLPSDVESRDRQARCIWFLDTLI 284
Query: 332 KFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDKIHLLIS-YVLVL 385
KF+ Q + SA +P I++ K L F+ + + L D + I+ YV++L
Sbjct: 285 KFRAQRVVKR-KSALGPGVPHIINTKLLKHFTCLTYNNGRLRNLISDSMKAKITAYVIIL 343
Query: 386 TLHADDFRTNPTDIAKDLRMSE 407
LH DF+ + T + DL++SE
Sbjct: 344 ALHIHDFQIDLTMLQGDLKLSE 365
>gi|332228369|ref|XP_003263364.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Nomascus
leucogenys]
Length = 419
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/323 (21%), Positives = 156/323 (48%), Gaps = 35/323 (10%)
Query: 108 RMELVVSPRDSSVDYVGTSY-SGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEP 166
R + +++ + YVG ++ +G C + VG+L++++ +++ ++F ++P
Sbjct: 55 RNQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDA---ELFNMQP 111
Query: 167 RVRGSDVADKDAGKGEISAEVQA-NMKAMLDTRYGTKKSLRQSKKMHA--LNKENDPESQ 223
SDV+ + E++ E Q + +D+ + +Q + ++A +N+ +
Sbjct: 112 LF--SDVS----VESELALESQTKTYREKMDSCIEAFGTTKQKRALNARRMNRVGNESLN 165
Query: 224 KDLALKMKSVKINKEALESTTSDTVLN--------VPPYDANATTPQQAYPLDKIILKGE 275
+ +A +++ I+ + + + SD + N +PP +A P+ Y + ++ E
Sbjct: 166 RAVAKAAETI-IDTKGVTALVSDAIHNDLQDDSLYLPPCYDDAAKPEDVYKFEDLLSPAE 224
Query: 276 WDFVQ---DIFNHVSAGSEVISDAYPSFVCN-RIHKLREIQDDVE-KQTLASIFSYITHL 330
++ +Q + F +V++ E++ + CN I L+ + DVE + A ++ L
Sbjct: 225 YEALQSPSEAFRNVTS-EEILKMIEENSHCNFVIEALKSLPSDVESRDRQARCIWFLDTL 283
Query: 331 VKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDKIHLLIS-YVLV 384
+KF+ Q + SA +P +++ K L F+ + + L D + I+ YV++
Sbjct: 284 IKFRAQRVVKR-KSALGPGVPHVINTKLLKHFTCLTYNNGRLRNLISDSMKAKITAYVII 342
Query: 385 LTLHADDFRTNPTDIAKDLRMSE 407
L LH DF+ + T + +DL++SE
Sbjct: 343 LALHIHDFQIDLTMLQRDLKLSE 365
>gi|302677436|ref|XP_003028401.1| hypothetical protein SCHCODRAFT_112774 [Schizophyllum commune H4-8]
gi|300102089|gb|EFI93498.1| hypothetical protein SCHCODRAFT_112774 [Schizophyllum commune H4-8]
Length = 438
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 89/418 (21%), Positives = 165/418 (39%), Gaps = 60/418 (14%)
Query: 69 PLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRME----LVVSPRDSSVDYVG 124
P + FPS+ P +R+ N KK + + + L + V++
Sbjct: 36 PTLACFPSLIPPGSTP-----------FRSWNVKKPKVSKGDDADRLFIGGETDKVEFTT 84
Query: 125 TSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEIS 184
E + C Y V + + T +L + P L P++ V + +
Sbjct: 85 NMEETEKASEAGCRYLVAIHNPRTSSLTVYPTP------LTPQILSHTVKALKSIPPAPA 138
Query: 185 AEVQANMKAM--LDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVKINKEALES 242
+A +A L +GTKK+ + + + NK + + + M+ + E L +
Sbjct: 139 PTARAFREARNNLGETFGTKKA-KAAIRAQERNKVDVGAMEGVMGHVMEGIDKGAENLLT 197
Query: 243 T-----TSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDAY 297
+D VPPYDA P YPL +I + EW + +AG
Sbjct: 198 KEEAKEAADANRLVPPYDAATDDPMDVYPLHGVIPEPEWKALSVSAFEQAAGFAERRALL 257
Query: 298 PSFVCNRI-HKLR------EIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHR- 349
P++ + H LR E+ ++ L +F Y++ ++ F+ S G A + H
Sbjct: 258 PAWRSEWLQHHLRRAFEDKELSSKARRRVLKIVF-YVSAMMAFRRLLSGRGVAKEELHTK 316
Query: 350 ---IPKILHQKFLTSFSD-AESKRLSDDKIHL-------LISYVLVLTLHADDFRTNPTD 398
+P ++ F++ A D K+ L++++ L L D+ T+
Sbjct: 317 MPGVPAVVVDGLAARFTESARDAGPGDPKLQATSAMQTKLLTHMFALCLRVDNCATDSAQ 376
Query: 399 IAKDLRMSEFKLRDHFEKLGCKLL----REKNML-------YATLPVPLQFPKAIQRR 445
+A DL+M++ ++ F+ +GCK+ R++ L A L P++FPK R+
Sbjct: 377 LATDLQMAQAQVNGLFKTMGCKIGKMTERDRARLGVADDKKRAVLSAPVEFPKPKTRK 434
>gi|26341494|dbj|BAC34409.1| unnamed protein product [Mus musculus]
Length = 393
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/326 (23%), Positives = 146/326 (44%), Gaps = 49/326 (15%)
Query: 112 VVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKIV--------PIAANKIF 162
+V+ + YVG ++ A+ C + VG+L++++ +++ P+ A+
Sbjct: 74 IVAAETDRLSYVGNNFGTGALKCNALCRHFVGILNKTSGQMEVYDAELFNMQPLFADDAI 133
Query: 163 RLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QSKKMHALNKENDP 220
EP + + +D I A +G+ K R S++M+ + E+
Sbjct: 134 EREPPLENQNKTFRDKLDSCIEA-------------FGSTKQKRSLNSRRMNKVGSESLN 180
Query: 221 ESQKDLALKMKSVK----INKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEW 276
S A + K + +A++ D VL +PP A+A P+ Y + I+ E+
Sbjct: 181 LSVAKAAESIIDTKGVNALVSDAMQDDLQDGVLYLPPCYADAAKPEDVYRFEDILSPAEY 240
Query: 277 DFVQ---DIFNHVSAGSEVI-----SDAYPSFVCNRIHKLREIQ-DDVEKQTLASIFSYI 327
D ++ + F V+ SE I +++ S+V I L+ + D+V + A ++
Sbjct: 241 DALESPSEAFRKVT--SEDILKMIEENSHCSYV---IEMLKSLPIDEVHRNRQARSIWFL 295
Query: 328 THLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDKIHLLI-SY 381
L++F+ Q + G A IP I++ K L F+ + + L + I SY
Sbjct: 296 DALIRFRAQKVIKG-KRALGPGIPHIINTKLLKQFTCLTYNNGRLQNLISSSMRAKITSY 354
Query: 382 VLVLTLHADDFRTNPTDIAKDLRMSE 407
++L LH ++F+ + T + KDL++SE
Sbjct: 355 AIILALHINNFQVDLTALQKDLKLSE 380
>gi|354485343|ref|XP_003504843.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49-like
[Cricetulus griseus]
gi|344236089|gb|EGV92192.1| DNA-directed RNA polymerase I subunit RPA49 [Cricetulus griseus]
Length = 434
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 86/384 (22%), Positives = 178/384 (46%), Gaps = 48/384 (12%)
Query: 98 NMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKIVPI 156
N N+ N + + +++ + YVG ++ A+ C + VG+L++++ ++
Sbjct: 60 NSNDLVNPRLKNQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGKGEVYDA 119
Query: 157 AANKIFRLEPRVRGSDVADKDAGKGEISAEVQA-NMKAMLDT---RYGTKKSLR--QSKK 210
++F ++P + +DA + E E QA + LD+ +G+ K R S++
Sbjct: 120 ---ELFNMQP------LFAEDAIEQEPPPENQAKTFREKLDSCIEAFGSTKQKRSLNSRR 170
Query: 211 MHALNKENDPESQKDLALKMKSVK----INKEALESTTSDTVLNVPPYDANATTPQQAYP 266
M+ + E+ + A + K + +A++ D L +PP A+AT P+ Y
Sbjct: 171 MNKVGSESLNLTVTKAAENIIDTKGVNALVSDAMQDDLQDDSLYLPPCHADATKPEDVYR 230
Query: 267 LDKIILKGEWDFVQ---DIFNHVSAGSEVI-----SDAYPSFVCNRIHKLREIQDDVEKQ 318
+ I+ + E+D ++ + F V+ SE I + + SFV + L ++ ++Q
Sbjct: 231 FEDILSQAEYDALESPSEAFRKVT--SEDILKMIEENRHCSFVIEMLKSLPSNEESRDRQ 288
Query: 319 TLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDD 373
A ++ L++F+ Q + G SA IP I++ K L +F+ + + L
Sbjct: 289 --ARSIWFLDALIRFRAQKVIK-GKSALGPGIPHIINTKLLKNFTCLTYNNGSLRNLISS 345
Query: 374 KIHLLIS-YVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLL---------R 423
+ I+ + ++L LH + F+ + T + DL++SE ++ + + + K+ R
Sbjct: 346 SMKAKITAFAIILALHINSFQIDLTLLQGDLKLSEKRMIEIAKAMRLKISKRKVTLADGR 405
Query: 424 EKNMLYATLPVPLQFPKAIQRRRR 447
E++ TL VPL P+ R+ +
Sbjct: 406 EEDHRLGTLSVPLPPPQTSDRQSK 429
>gi|90075070|dbj|BAE87215.1| unnamed protein product [Macaca fascicularis]
Length = 419
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/326 (21%), Positives = 159/326 (48%), Gaps = 41/326 (12%)
Query: 108 RMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEP 166
R + +++ + YVG ++ A+ C + VG+L++++ +++ ++F ++P
Sbjct: 55 RNQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDA---ELFNMQP 111
Query: 167 RVRGSDVA-DKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHA--LNKENDPESQ 223
SDV+ + + + + M + ++ +GT K Q + ++A +N+ +
Sbjct: 112 LF--SDVSVESELALDSQTKTYREKMDSCIEA-FGTTK---QKRALNARRMNRVGNGSLN 165
Query: 224 KDLALKMKSVKINKEALESTTSDTVLN--------VPPYDANATTPQQAYPLDKIILKGE 275
+ +A +++ I+ + + + SD + N +PP +AT P+ Y + ++ E
Sbjct: 166 QAVAKAAETI-IDTKGVTALVSDAIHNDLQDDSLYLPPCYDDATKPEDVYKFEDLLSPAE 224
Query: 276 WDFVQ---DIFNHVSAGSEVI----SDAYPSFVCNRIHKLREIQDDVE-KQTLASIFSYI 327
++ +Q + F +V++ E++ +++ +FV I L+ + DVE + A ++
Sbjct: 225 YEALQSPSEAFRNVTS-EEILKMIEENSHCTFV---IEALKSLPSDVESRDRQARCIWFL 280
Query: 328 THLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDKIHLLIS-Y 381
L+KF+ Q + SA +P I++ K L F+ + + L D + I+ Y
Sbjct: 281 DTLIKFRAQRVVKR-KSALGPGVPHIINTKLLKHFTCLTYNNGRLRNLISDSMKAKITAY 339
Query: 382 VLVLTLHADDFRTNPTDIAKDLRMSE 407
V++L LH DF+ + T + DL++SE
Sbjct: 340 VIILALHIHDFQIDLTMLQGDLKLSE 365
>gi|157817813|ref|NP_001101408.1| DNA-directed RNA polymerase I subunit RPA49 [Rattus norvegicus]
gi|149045803|gb|EDL98803.1| polymerase (RNA) I associated factor 1 (predicted) [Rattus
norvegicus]
gi|165970698|gb|AAI58700.1| Polymerase (RNA) I polypeptide E [Rattus norvegicus]
Length = 434
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 77/358 (21%), Positives = 161/358 (44%), Gaps = 46/358 (12%)
Query: 112 VVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRG 170
+++ + YVG ++ A+ C + VG+L++++ +++ ++F ++P
Sbjct: 74 ILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDA---EVFNMQPLF-- 128
Query: 171 SDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHA--LNKENDPESQKDLAL 228
A+ G + LD+ S +Q + +++ +NK +A
Sbjct: 129 ---AEDSIEHGPPLENQNKTFRDKLDSCIEAFGSTKQKRSLNSRRMNKVGSESLNFTVAK 185
Query: 229 KMKSVKINKEALESTTSDTV--------LNVPPYDANATTPQQAYPLDKIILKGEWDFVQ 280
+S+ I+ + + + SD + L +PP A+AT P+ Y + I+ E+D ++
Sbjct: 186 AAESI-IDTKGVSALVSDAMQDDLQNDSLYLPPCHADATKPEDVYRFEDILSPAEYDALE 244
Query: 281 ---DIFNHVSAGS---EVISDAYPSFVCNRIHKLREI-QDDVEKQTLASIFSYITHLVKF 333
+ F V + V +++ SF+ I L+ + D+V++ A ++ L++F
Sbjct: 245 SPSEAFRKVMSEDILKMVEENSHCSFI---IEMLKSLPADEVQRNRQARSIWFLDALLRF 301
Query: 334 KDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDKIHLLIS-YVLVLTL 387
+ Q + G SA IP I++ K L F+ + + L + I+ Y ++L L
Sbjct: 302 RAQKVIKG-KSALGPGIPHIINTKLLKQFTCLTYNNGSLRNLISSSMKAKITAYAIILAL 360
Query: 388 HADDFRTNPTDIAKDLRMSE---------FKLRDHFEKLGCKLLREKNMLYATLPVPL 436
H ++F+ + T + +DL++SE +L+ K+ RE++ TL VPL
Sbjct: 361 HINNFQIDLTVLQRDLKLSEKRMIEIARAMRLKISKRKVSLADGREEDHRLGTLSVPL 418
>gi|261859350|dbj|BAI46197.1| polymerase (RNA) I polypeptide E, 53kDa [synthetic construct]
Length = 481
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 78/360 (21%), Positives = 172/360 (47%), Gaps = 42/360 (11%)
Query: 92 KVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQT 150
+ +Y N + N R + +++ + YVG ++ A+ C + VG+L++++
Sbjct: 102 RFTLYEN-KDSTNPRKRNQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQ 160
Query: 151 LKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQAN-----MKAMLDTRYGTKKSL 205
+++ ++F ++P SDV+ + E++ E Q M + ++ +GT K
Sbjct: 161 MEVYDA---ELFNMQPLF--SDVS----VESELALESQTKTYREKMDSCIEA-FGTTKQK 210
Query: 206 R--QSKKMHALNKENDPESQKDLALKMKSVK----INKEALESTTSDTVLNVPPYDANAT 259
R +++M+ + E+ + A + K + +A+ + D L +PP +A
Sbjct: 211 RALNTRRMNRVGNESLNRAVAKAAETIIDTKGVTALVSDAIHNDLQDDSLYLPPCYDDAA 270
Query: 260 TPQQAYPLDKIILKGEWDFVQ---DIFNHVSAGSEVI----SDAYPSFVCNRIHKLREIQ 312
P+ Y + ++ E++ +Q + F +V++ E++ +++ +FV I L+ +
Sbjct: 271 KPEDVYKFEDLLSPAEYEALQSPSEAFRNVTS-EEILKMIEENSHCTFV---IEALKSLP 326
Query: 313 DDVE-KQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAE 366
DVE + A ++ L+KF+ H + SA +P I++ K L F+ +
Sbjct: 327 SDVESRDRQARCIWFLDTLIKFR-AHRVVKRKSALGPGVPHIINTKLLKHFTCLTYNNGR 385
Query: 367 SKRLSDDKIHLLIS-YVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREK 425
+ L D + I+ YV++L LH DF+ + T + +DL++SE ++ + + + K+ + K
Sbjct: 386 LRNLISDSMKAKITAYVIILALHIHDFQIDLTVLQRDLKLSEKRMMEIAKAMRLKISKRK 445
>gi|21749630|dbj|BAC03629.1| unnamed protein product [Homo sapiens]
gi|119578685|gb|EAW58281.1| polymerase (RNA) I polypeptide E, 53kDa, isoform CRA_b [Homo
sapiens]
Length = 481
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 76/342 (22%), Positives = 163/342 (47%), Gaps = 42/342 (12%)
Query: 92 KVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQT 150
+ +Y N + N R + +++ + YVG ++ A+ C + VG+L++++
Sbjct: 102 RFTLYEN-KDSTNPRKRNQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQ 160
Query: 151 LKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQAN-----MKAMLDTRYGTKKSL 205
+++ ++F ++P SDV+ + E++ E Q M + ++ +GT K
Sbjct: 161 MEVYDA---ELFNMQPLF--SDVS----VESELALESQTKTYREKMDSCIEA-FGTTKQK 210
Query: 206 R--QSKKMHALNKENDPESQKDLALKMKSVK----INKEALESTTSDTVLNVPPYDANAT 259
R +++M+ + E+ + A + K + +A+ + D L +PP +A
Sbjct: 211 RALNTRRMNRVGNESLNRAVAKAAETIIDTKGVTALVSDAIHNDLQDDSLYLPPCYDDAA 270
Query: 260 TPQQAYPLDKIILKGEWDFVQ---DIFNHVSAGSEVI----SDAYPSFVCNRIHKLREIQ 312
P+ Y + ++ E++ +Q + F +V++ E++ +++ +FV I L+ +
Sbjct: 271 KPEDVYKFEDLLSPAEYEALQSPSEAFRNVTS-EEILKMIEENSHCTFV---IEALKSLP 326
Query: 313 DDVE-KQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAE 366
DVE + A ++ L+KF+ H + SA +P I++ K L F+ +
Sbjct: 327 SDVESRDRQARCIWFLDTLIKFR-AHRVVKRKSALGPGVPHIINTKLLKHFTCLTYNNGR 385
Query: 367 SKRLSDDKIHLLIS-YVLVLTLHADDFRTNPTDIAKDLRMSE 407
+ L D + I+ YV++L LH DF+ + T + +DL++SE
Sbjct: 386 LRNLISDSMKAKITAYVIILALHIHDFQIDLTVLQRDLKLSE 427
>gi|393219562|gb|EJD05049.1| Rpa49 subunit specific to nuclear RNA polymerase I [Fomitiporia
mediterranea MF3/22]
Length = 437
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 100/465 (21%), Positives = 190/465 (40%), Gaps = 71/465 (15%)
Query: 23 GPKKKNKKRKKDKANTTIDEQPEPELEPERVKAKVQFIPEQPNKAPPLVGYFPSI----- 77
P+ +KKRK+ A+++ D+ + + P+ P++ FP++
Sbjct: 2 APQTTSKKRKR--ADSSADQ------------VTISVFDKSPSAVGPILASFPALDPSKS 47
Query: 78 -----YKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAM 132
Y P P + +N ++ R L+V+ ++++ T GE
Sbjct: 48 AAFAAYAP----PQSPSKTNGAANKNAG-REQEFSRRPLLVAGETDAIEFHST---GENE 99
Query: 133 APQF-CHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRG-SDVADKDAGKGEISAEVQAN 190
A + Y +G+ ++ T TL + P + R RV+ ++A + E +
Sbjct: 100 AVRGGSRYLIGIHNKRTNTLLLRPAPLQILGR---RVKALKNLAPAPSTSSTERIEQRNT 156
Query: 191 MKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVKINKEALEST-----TS 245
+ M TR +K++R +++ N+ + + + +SV+ L S +
Sbjct: 157 LGEMFGTRKA-QKAIRTAER----NRVDVDAMEGVVGHIQESVESGTRGLPSQEEAKELA 211
Query: 246 DTVLNVPPYDANATTPQQAYPLDKIILKGEWDF--VQDIFNHVSAGSEVISDAYPSFVCN 303
D+ +P ++ +AT P+ Y L I+ + E + +++I N S + +
Sbjct: 212 DSTRQIPKFNLHATKPEDVYKLYDIVPESELNALPIKEIMNATSQEERMKFVPFSRSDWV 271
Query: 304 RIHKLREIQDDVEKQTLASIFSYITHLVKFK-DQHSMDGGASAKQHRIPKI-------LH 355
R H + + I YI L+ F+ + R+P I ++
Sbjct: 272 RQHVAAIFEGTKTSKRSLRIILYIACLLVFRMGAVRYCNKREDLEERLPGIPSNVIDGIY 331
Query: 356 QKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFE 415
+F + + + + D L++++ L LH D+F T+ T IA DLR K+ HF+
Sbjct: 332 SRFTETVRGSSRVQFTSDNAVRLLTHIFALCLHVDNFATDTTLIAADLREPVTKINQHFK 391
Query: 416 KLGCKLLR----EKNML----------YATLPVPLQFPKAIQRRR 446
LGCK+ + E + L A L VPL+FPKA +RR
Sbjct: 392 LLGCKIEKLSTVEMSRLGLSASGAEHKRAVLRVPLEFPKARMKRR 436
>gi|62901107|sp|Q9GZS1.2|RPA49_HUMAN RecName: Full=DNA-directed RNA polymerase I subunit RPA49;
Short=RNA polymerase I subunit A49; AltName:
Full=DNA-directed RNA polymerase I subunit E; AltName:
Full=RNA polymerase I-associated factor 1; AltName:
Full=RNA polymerase I-associated factor 53
Length = 481
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 162/346 (46%), Gaps = 50/346 (14%)
Query: 92 KVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQT 150
+ +Y N + N R + +++ + YVG ++ A+ C + VG+L++++
Sbjct: 102 RFTLYEN-KDSTNPRKRNQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQ 160
Query: 151 LKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQAN-----MKAMLDTRYGTKKSL 205
+++ ++F ++P SDV+ + E++ E Q M + ++ +GT K
Sbjct: 161 MEVYD---AELFNMQPLF--SDVS----VESELALESQTKTYREKMDSCIEA-FGTTKQK 210
Query: 206 R--QSKKMHALNKENDPESQKDLALKMKSVKINKEALESTTSDTV--------LNVPPYD 255
R +++M+ + E S K I+ + + + SD + L +PP
Sbjct: 211 RALNTRRMNRVGNE----SLNRAVAKAAETIIDTKGVTALVSDAIHNDLQDDSLYLPPCY 266
Query: 256 ANATTPQQAYPLDKIILKGEWDFVQ---DIFNHVSAGSEVI----SDAYPSFVCNRIHKL 308
+A P+ Y + ++ E++ +Q + F +V++ E++ +++ +FV I L
Sbjct: 267 DDAAKPEDVYKFEDLLSPAEYEALQSPSEAFRNVTS-EEILKMIEENSHCTFV---IEAL 322
Query: 309 REIQDDVE-KQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS---- 363
+ + DVE + A ++ L+KF+ H + SA +P I++ K L F+
Sbjct: 323 KSLPSDVESRDRQARCIWFLDTLIKFR-AHRVVKRKSALGPGVPHIINTKLLKHFTCLTY 381
Query: 364 -DAESKRLSDDKIHLLIS-YVLVLTLHADDFRTNPTDIAKDLRMSE 407
+ + L D + I+ YV++L LH DF+ + T + +DL++SE
Sbjct: 382 NNGRLRNLISDSMKAKITAYVIILALHIHDFQIDLTVLQRDLKLSE 427
>gi|169854990|ref|XP_001834166.1| Rpa49 subunit specific to nuclear RNA polymerase I [Coprinopsis
cinerea okayama7#130]
gi|116504767|gb|EAU87662.1| Rpa49 subunit specific to nuclear RNA polymerase I [Coprinopsis
cinerea okayama7#130]
Length = 435
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 100/459 (21%), Positives = 177/459 (38%), Gaps = 66/459 (14%)
Query: 25 KKKNKKRKKDKANTTIDEQPEPELEPERVKAKVQFIPEQPNKAPPLVGYFPSIYKPDVDH 84
K +KKRK+D + P L E +K Q P LV Y P V
Sbjct: 5 KSSSKKRKRDAS-------PSSTLTFELSSSK------QTKGGPFLVNY------PVVKA 45
Query: 85 PDEEMRPKVRVYRNMNEKKNRTGRME----LVVSPRDSSVDYVGTSYSGEAMAPQFCHYA 140
P+ + Y N +K + E ++++ +V+++ +A CHY
Sbjct: 46 PE---KTAFNCYANKKQKTSGDAEDERQNDILLAGETETVEFMTNEDETYRVAQGGCHYF 102
Query: 141 VGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDV-ADKDAGKGEISAEVQ-ANMKAMLDTR 198
+ + ++ T + ++P + + P + V A K ++ Q K L
Sbjct: 103 IALHNKKTGKVAVLPQSTS------PHILVHTVKALKSIAPAPAPSKTQFREAKNALGET 156
Query: 199 YGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVKINKEALEST-----TSDTVLNVPP 253
+GTKK+ + + + N + + + M S+ E L +T SDT +PP
Sbjct: 157 FGTKKA-KAAIRAQERNHVDVGAMEGVMGYVMDSIDKGAEGLMTTEEAKVASDTNRLIPP 215
Query: 254 YDANATTPQQAYPLDKIILKGEWDFVQ----DIFNHVSAGSEVISDAYPSFVCNRIHKLR 309
+ AT+P YPL II + EW + D + ++ Y ++ +
Sbjct: 216 FSTEATSPDDIYPLYSIIPEAEWKALSISALDSTKNEKERLALLPYRYSEWLRQHLRNSG 275
Query: 310 EIQDDVEKQTLASIFSYITHLVKFKDQHSMD----GGASAKQHRIPKILHQKFLTSFSDA 365
+ ++ I YI+ ++ F+ S K +P I+ L+ F++
Sbjct: 276 TAESPKTRKRNLKILLYISAMLAFRQATSRKEINKDQIYEKLAPLPSIVADSLLSRFTEV 335
Query: 366 ESKRLSDDKIHL----LISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKL 421
S L++++ L L D F T+ +A+DL M ++ F LGCK+
Sbjct: 336 ARGSTSYQSTSTTKTNLLTHIFALCLKVDQFATDTEMLAQDLSMKTAEVNQLFRSLGCKM 395
Query: 422 L----REKNML----------YATLPVPLQFPKAIQRRR 446
+ RE+ L A L P++FPK RR+
Sbjct: 396 VKLGDRERTRLGLSDESAEKKRAVLTAPVEFPKPRLRRK 434
>gi|351712431|gb|EHB15350.1| DNA-directed RNA polymerase I subunit RPA49, partial
[Heterocephalus glaber]
Length = 399
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 82/371 (22%), Positives = 165/371 (44%), Gaps = 64/371 (17%)
Query: 108 RMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKIV--------PIAA 158
R + +++ + Y+G ++ A+ C + VG+L++++ +++ P+ A
Sbjct: 37 RSQRILAAETDRLSYIGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDAELFNMQPLFA 96
Query: 159 NKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QSKKMHALNK 216
++ EP + ++ I A +GT K R S+KM+ +
Sbjct: 97 DESIECEPTLESQTKTFREKMDSCIEA-------------FGTTKQKRALNSRKMNKVGS 143
Query: 217 ENDPESQKDLAL-KMKSVKINKEALESTTSDTV--------LNVPPYDANATTPQQAYPL 267
E+ +LA+ K I+ + +E+ SD + L +PP A+A P+ Y
Sbjct: 144 ES-----LNLAVAKAAEEIIDTKGVEALVSDAIKDDLQDDSLYLPPCYADAAKPEDVYKF 198
Query: 268 DKIILKGEWDFV---QDIFNHVSAGSEVI----SDAYPSFVCNRIHKLREIQDDVEKQTL 320
+ I+ E+D + + F V++ E++ +++ FV + L ++ + Q
Sbjct: 199 EDILSPVEYDALGGPSEAFRKVTS-EEILKMIDENSHCLFVIEALKSLPSNEESRDHQ-- 255
Query: 321 ASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS----DAESKR--LSDDK 374
A ++ L+KF+ Q + SA IP I++ K L F+ + S R +S+
Sbjct: 256 ARCIWFLDTLIKFRAQKVIKR-KSALGPGIPHIINTKLLKHFTCLTYNNGSLRNIISNSM 314
Query: 375 IHLLISYVLVLTLHADDFRTNPTDIAKDLRMSE---------FKLRDHFEKLGCKLLREK 425
+ +YV++L LH +DF+ + T + +DL++SE +L+ K+ RE+
Sbjct: 315 KAKITAYVIILALHMNDFQIDLTVLQRDLKLSEKRMIEIAKAMRLKISKRKMSLAPGREE 374
Query: 426 NMLYATLPVPL 436
+ TL +PL
Sbjct: 375 DHRLGTLSIPL 385
>gi|395823855|ref|XP_003785192.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Otolemur
garnettii]
Length = 419
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/367 (20%), Positives = 168/367 (45%), Gaps = 40/367 (10%)
Query: 100 NEKKNRTGRMELVVSPRDSSVDYVGTSY-SGEAMAPQFCHYAVGVLDRSTQTLKIVPIAA 158
++ KN + + +++ + YVG ++ +G C + VG+L++++ +++
Sbjct: 47 DDSKNPRRKNQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDA-- 104
Query: 159 NKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QSKKMHALNK 216
++F ++P V + + + + M + ++ +GT K R S++M+ +
Sbjct: 105 -ELFNMQPLFSDESVETEQTLDSQ-TKTFREKMDSCIEA-FGTTKQKRALNSRRMNRVGN 161
Query: 217 ENDPESQKDLALKMKSVK----INKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIIL 272
E+ + A + K + +A+ D L +PP A+A P+ Y + ++
Sbjct: 162 ESLNLAVAKAAENIIDTKGVTALVSDAIHDDLQDDSLYLPPCHADAAKPEDVYKFEDLLS 221
Query: 273 KGEWDFVQ---DIFNHVSAGSEVI-----SDAYPSFVCNRIHKLREIQDDVEKQTLASIF 324
E++ +Q + F +V+ SE I +++ SFV + L ++ ++Q A
Sbjct: 222 PVEYEALQSPSEAFRNVT--SEDILKMIEENSHCSFVIEALKSLPSNEESRDRQ--ARCI 277
Query: 325 SYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDKIHLLI 379
++ L+KF+ Q + SA +P I++ K L F+ + + L D + I
Sbjct: 278 WFLDTLIKFRTQKVIKR-KSALGPAVPHIINTKLLKHFTCLTYNNGSLRNLISDSMKAKI 336
Query: 380 S-YVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYA-------- 430
+ YV++L LH F+ + T + +DL++SE ++ + + K+ + + L A
Sbjct: 337 TAYVIILALHISSFQIDLTMLQRDLKLSERRMMEIARAMRLKISKTRVSLAAGGEEDHKL 396
Query: 431 -TLPVPL 436
TL +PL
Sbjct: 397 GTLSIPL 403
>gi|66803262|ref|XP_635474.1| hypothetical protein DDB_G0290909 [Dictyostelium discoideum AX4]
gi|74851633|sp|Q54FE8.1|RPA49_DICDI RecName: Full=DNA-directed RNA polymerase I subunit rpa49;
Short=RNA polymerase I subunit A49; AltName:
Full=DNA-directed RNA polymerase I subunit E
gi|60463794|gb|EAL61970.1| hypothetical protein DDB_G0290909 [Dictyostelium discoideum AX4]
Length = 375
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 150/335 (44%), Gaps = 45/335 (13%)
Query: 127 YSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAE 186
Y E ++ YA+G+ D++T+ LKIVP KI + V G + + IS E
Sbjct: 62 YESEDKDSKYAKYAIGIFDKNTKQLKIVP---TKIQTMNQSVIGYTLTLDSSSV--ISRE 116
Query: 187 VQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSV-KINKEALESTTS 245
+ + L +G+K + ++ +KM N EN D KS+ + E + ++
Sbjct: 117 ERYDKIKKLADSFGSKITKKKMQKMEMENVEN-----LDYEKTTKSIDAVKNELADIESN 171
Query: 246 DTVLNVPPYDANATTPQQAYPLDKI----ILKGEWDFVQDIFNHVSAGSEVISDAYPSFV 301
+ ++P +DA ++ Y ++ I I G Q + +S SE S P +
Sbjct: 172 EKPFDLPDFDAETNDVRKIYNIEAILPPRIFFGLNH--QPFLDIISKTSEAPS-YLPEYF 228
Query: 302 CNRIHKLREIQDD---VEKQTLASIFSYITHLVKFKDQHS--MDGGASAKQHRI------ 350
+++ + +I+D+ V L + Y L+K K H + G +++
Sbjct: 229 KDQLKRFEDIKDEEKVVYNCKLLTFMWYSMILMKSKGGHEPLIKEGCTSEVINFLVSIFG 288
Query: 351 PKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFR-TNPTDIAKDLRMSEFK 409
KI H+K+ S DDK+ + +Y+ + L +DF+ T+ +A+ L ++
Sbjct: 289 SKINHKKYNIS---------QDDKLKIY-NYLAIFALKLEDFQITDIKSLAQSLSLTSSS 338
Query: 410 LRDHFEKLGCKLLR---EKNMLYATLPVPLQFPKA 441
HF ++GCK++R EK + L PL+ PKA
Sbjct: 339 FEKHFTRVGCKVVRIGSEKRSV--RLEAPLKLPKA 371
>gi|363744952|ref|XP_424416.3| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Gallus
gallus]
Length = 413
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/397 (21%), Positives = 167/397 (42%), Gaps = 62/397 (15%)
Query: 92 KVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQT 150
+ +YR+ R R ++VS + + YVG ++ AM C Y +GVL++ T
Sbjct: 35 RFSLYRSSEVANPRKRRRRILVSETER-LSYVGNNFGSGAMKCNSLCRYFLGVLNKDTGQ 93
Query: 151 LKIVPIAANKIFRLEPRVRGSDVAD--KDAGKGEISAEVQANMKAMLDTRYGTKKSLR-- 206
+++ +IF ++P + + + D +D +V ++A +GT K R
Sbjct: 94 MEVYNA---EIFNMQPLLSDNVIPDDTRDYQNKSYREKVDLCIEA-----FGTSKQKRAL 145
Query: 207 QSKKMHALNKENDPESQKDLALKMKSVKINKEALESTTSDTVLN----VPPYDANATTPQ 262
S++M+A+ + + A + K ++ D N +PP +A P+
Sbjct: 146 NSRRMNAVGNDIVSTAVTKAAADVIDAKGVTALIQDVAQDDEQNMSIFLPPCHEDADKPE 205
Query: 263 QAYPLDKIILKGEWDFVQD---IFNHVS---AGSEVISDAYPSFVCNRIHKLREIQDDVE 316
Y + I+ E++ +Q F +++ + ++ SFV + L D+
Sbjct: 206 NVYKFEDILSPAEYEALQGPAAAFMNITPEEIAKKTEEKSHCSFVLEELKFLP--ADEKS 263
Query: 317 KQTLASIFSYITHLVKF------KDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRL 370
+ A ++ L+KF K +H M P I+ +K + +F+ S
Sbjct: 264 RDRKARCLWFLDILIKFSFLKIIKKKHPMG-------PECPHIISRKLMKNFT---SLTY 313
Query: 371 SDDKIHLLIS---------YVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKL 421
++ + LIS YV+ L LH +F+T+ T + DL++ E ++ D + K+
Sbjct: 314 NNGSVQNLISASLKTKIAAYVIALALHIKNFQTDLTVLQNDLKLHESRMMDIARAMRLKV 373
Query: 422 LREKNM-----------LYATLPVPLQFPKAIQRRRR 447
+ K M +LP+P+Q QR+R+
Sbjct: 374 SKAKGMPGLENDQNHKLGTLSLPLPVQKASGSQRKRK 410
>gi|170097043|ref|XP_001879741.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645144|gb|EDR09392.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 436
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 96/422 (22%), Positives = 168/422 (39%), Gaps = 54/422 (12%)
Query: 64 PNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYV 123
P + PL+ +P++ P R K++ N+ ++ + L V DS V++V
Sbjct: 29 PAQVGPLLVTYPALQAPSSTVFKCYARKKIKTKSRENDTEDPKSQDLLAVGETDS-VEFV 87
Query: 124 GTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDV-ADKDAGKGE 182
+A CHY V +R T +L I+P+ + P V V A K
Sbjct: 88 TNDSESRKVASLGCHYLVAAHNRRTGSLSILPMPKS------PHVLTRTVKALKSIPPAA 141
Query: 183 ISAEVQA-NMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVKINKEALE 241
++ Q +A L +GTKK+ K N + + + M S+ L
Sbjct: 142 APSKTQFREARAALGETFGTKKAKAAIKAQER-NVVDVGAMEGVMGYVMDSIDKGAGGLM 200
Query: 242 ST-----TSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQ-DIFNHVSAGSEVISD 295
ST +D +PP++A T P YPL II + EW + F+ + E I+
Sbjct: 201 STEEAKDAADQNRLIPPFNATTTDPSDVYPLHDIISEAEWKALSVTAFDDANDDKERIAL 260
Query: 296 A---YPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKF----------KDQHSMDGG 342
Y ++ + + + +K+ + I YI+ ++ F KDQ
Sbjct: 261 LPFRYSKWLTGHLSIISQETGKSKKKHM-KILLYISAMLGFRQALLRKDFDKDQ------ 313
Query: 343 ASAKQHRIPKILHQKFLTSFSD----AESKRLSDDKIHLLISYVLVLTLHADDFRTNPTD 398
K +P I+ ++ F++ + + + L+++ + L L D F ++
Sbjct: 314 LYEKFSGVPSIVLDSLVSRFTEVSRGSTKHQATSTTKTLILTNIFALCLKLDKFASDTDL 373
Query: 399 IAKDLRMSEFKLRDHFEKLGCKLL----REKNML----------YATLPVPLQFPKAIQR 444
+A DL M ++ F+ LGCK+ RE+ L A L P+ FPK +
Sbjct: 374 LAHDLSMKASEVNQLFKSLGCKITTLGERERTRLGIPDSSASTKRAVLNAPVVFPKPRIK 433
Query: 445 RR 446
R+
Sbjct: 434 RK 435
>gi|403298610|ref|XP_003940106.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Saimiri
boliviensis boliviensis]
Length = 419
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/326 (20%), Positives = 155/326 (47%), Gaps = 41/326 (12%)
Query: 108 RMELVVSPRDSSVDYVGTSY-SGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEP 166
R + +++ + YVG ++ +G C + VG+L++++ +++ ++F ++P
Sbjct: 55 RNQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDA---ELFNMQP 111
Query: 167 RVRGSDVADKDAGKGEISAEVQA-NMKAMLDTRYGTKKSLRQSKKMHA--LNKENDPESQ 223
V + E+ E Q + +D+ + +Q + ++A +NK
Sbjct: 112 LFSDESV------ESELVQESQTKTYREKMDSCIEAFGTTKQKRALNARRMNKVGGDSLN 165
Query: 224 KDLALKMKSVKINKEALESTTSDTVLN--------VPPYDANATTPQQAYPLDKIILKGE 275
+ +A +++ I+ + + + SD + N +PP +A P+ Y + ++ E
Sbjct: 166 RAVAKAAETI-IDTKGVTALVSDAIHNDLQDDSLYLPPCYDDAAKPEDVYKFEDLLSPAE 224
Query: 276 WDFVQ---DIFNHVSAGSEVI----SDAYPSFVCNRIHKLREIQDDVE-KQTLASIFSYI 327
++ +Q + F +V++ E++ +++ +FV I L+ + +VE + A ++
Sbjct: 225 YEALQSPSEAFRNVTS-EEILKMIEENSHCTFV---IDALKSLPSNVESRDRQARCIWFL 280
Query: 328 THLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDKIHLLIS-Y 381
L+KF+ Q + +A IP I++ K L F+ + + L D + I+ Y
Sbjct: 281 DTLIKFRAQRVVKR-KNALGPDIPHIINTKLLKHFTCLTYNNGSLRNLISDSMKAKITAY 339
Query: 382 VLVLTLHADDFRTNPTDIAKDLRMSE 407
V++L LH +DF+ + T + +DL++SE
Sbjct: 340 VIILALHINDFQIDLTMLQRDLKLSE 365
>gi|344272159|ref|XP_003407903.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Loxodonta
africana]
Length = 419
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/358 (20%), Positives = 165/358 (46%), Gaps = 38/358 (10%)
Query: 108 RMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEP 166
R + +++ + YVG ++ A+ C + +GVL++++ +++ ++F + P
Sbjct: 55 RSQRILAAETDRLSYVGNNFGTGALKCNTLCRHFIGVLNKTSGQMEVYDA---ELFNMHP 111
Query: 167 RVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QSKKMHALNKENDPESQK 224
V + + + + + M + ++ +GT K R S++M+ + E+ +
Sbjct: 112 LFSDESVESELLSQSQ-TKTYREKMDSCIEA-FGTTKQKRALNSRRMNRVGNESLNLAVA 169
Query: 225 DLALKMKSVK----INKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQ 280
A + K + +A++ D + +PP A+A P+ Y + ++ E++ ++
Sbjct: 170 KAAENIIDTKGVTALVSDAMQDALQDGSVYLPPCYADADKPEDVYKFEDLLSPAEYEALK 229
Query: 281 ---DIFNHVSAGSEVI----SDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKF 333
+ F V++ E++ + + SFV + L ++ ++Q A ++ +KF
Sbjct: 230 SPSEAFRTVTS-EEILKMIEENRHCSFVIEALKSLPSNEESRDRQ--ARCIWFLDTFIKF 286
Query: 334 KDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDKIHLLIS-YVLVLTL 387
+ Q + SA +P I++ K L F+ + + L D + I+ YV++L L
Sbjct: 287 RAQKVIKR-KSALGPGVPHIINTKLLKHFTCLTYNNGSLRNLISDSMKAKITAYVIILAL 345
Query: 388 HADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLL---------REKNMLYATLPVPL 436
H +DF+ + T + +DL++SE ++ + + + K+ RE+ TL +PL
Sbjct: 346 HINDFQVDLTMLQRDLKLSEKRIIEIAKAMRLKISKRTVPVAAGREEEHRLGTLSIPL 403
>gi|342319485|gb|EGU11433.1| Rpa49 subunit specific to nuclear RNA polymerase I [Rhodotorula
glutinis ATCC 204091]
Length = 458
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 94/442 (21%), Positives = 185/442 (41%), Gaps = 82/442 (18%)
Query: 64 PNKAP-PLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGR--MELVVSPRDSSV 120
P AP P + FPS P + +Y E GR + V++ V
Sbjct: 26 PATAPQPALALFPSAQPPS--------KTPYTLYTKSGEVTGGDGRKRQQAVLAAETDDV 77
Query: 121 DY-----VGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVAD 175
++ +G GE Y +GV + T I+ + A + P V+ +
Sbjct: 78 EFESRNQLGVDEHGEGEG-YSVQYMLGVRNPRTN---ILTLHAAPLHTFTPTVK----SL 129
Query: 176 KDAGKGEISAEVQANMKAMLDTRYGTKKSLRQ--SKKMHALNKE-----NDPESQKD-LA 227
K A + +A++ A +A L + +GTKK+++Q +++ + LN+ ++ KD L
Sbjct: 130 KSAPASQSAAQLIAAQRAALGSTFGTKKAIKQLRAQERNKLNETSFGVGSEVAGLKDHLT 189
Query: 228 LKMKSVKINKEALEST--TSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNH 285
L +++ N +++S ++ +PPY+ +A +P + Y +D ++ + E + V + +
Sbjct: 190 LSIQAAAGNLPSMQSIEDEANEKRPIPPYNKDAKSPGEVYDMDAVVSQAELNAV-PLGDF 248
Query: 286 VSAGS-EVISDAYP----SFVCNRIHKLREIQDDVEKQT---------LASIFSYITHLV 331
+SA + D P F+ ++ +L + E + +++HL
Sbjct: 249 ISAPDFKARRDMLPYRRSDFIATKMRQLLPSRASAEGNVPNPSKRDRERLRLVVHLSHLF 308
Query: 332 KFKDQ-------------HSMDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIHLL 378
+F++ + ++A + + +K E+++++ L
Sbjct: 309 QFRNTVRPGQLVDRAKLVERLGNPSNAVVDALLERYTEKVKGGAGGEEARKVTTTMELKL 368
Query: 379 ISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLL------REKNMLYA-- 430
++Y+LV+ L D + T+ +A DL M ++ + F LGC+L+ REK +
Sbjct: 369 LTYMLVVALKLDGWSTDVETMANDLGMGTKRVGELFRSLGCQLIAPSAADREKLVATGRA 428
Query: 431 ------------TLPVPLQFPK 440
TL VPLQFPK
Sbjct: 429 STAAEAAKSKKATLKVPLQFPK 450
>gi|410978706|ref|XP_003995730.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Felis
catus]
Length = 422
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 156/330 (47%), Gaps = 38/330 (11%)
Query: 135 QFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAM 194
+ H+ VGVL++++ +++ ++F ++P V + D+ + + + M +
Sbjct: 87 ELLHF-VGVLNKTSGQMEVYDA---ELFNMQPLFSDESV-ESDSTRENEAKTFREKMDSC 141
Query: 195 LDTRYGTKKSLR--QSKKMHALNKENDPESQKDLALKMKSVK----INKEALESTTSDTV 248
++ +GT K R S++M+ + E+ + A + K + +A+ D
Sbjct: 142 IEA-FGTTKQKRALNSRRMNRVGNESLNCAVAKAAENIIDAKGVTALVSDAIRDEMQDDS 200
Query: 249 LNVPPYDANATTPQQAYPLDKIILKGEWDFVQ---DIFNHVSAGSEVI----SDAYPSFV 301
L +PP A+A P+ Y + ++ E++ +Q + F +VS+ E++ +++ SFV
Sbjct: 201 LYLPPCHADAAKPEDVYKFEDLLSPAEYEALQSPSEAFRNVSS-EEILKMIEENSHCSFV 259
Query: 302 CNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTS 361
+ L ++ ++Q A ++ L+KF+ Q + SA +P I+ K L
Sbjct: 260 IEALKSLPSDKESRDRQ--ARCIWFLDTLIKFRAQKVIKR-KSALGPGVPHIISTKLLKH 316
Query: 362 FS----DAESKR--LSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFE 415
F+ + S R +SD + +YV++L LH DF+ + T + +DL++SE ++ +
Sbjct: 317 FTCLTYNNGSLRNLISDSMKAKVTAYVIILALHISDFQIDLTLLQRDLKLSERRMMEIAR 376
Query: 416 KLGCKLLREKNMLYA---------TLPVPL 436
+ K+ + + L A TL +PL
Sbjct: 377 AMRLKISKRRVSLAAGGEEDHKLGTLSIPL 406
>gi|449514817|ref|XP_002190870.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Taeniopygia
guttata]
Length = 404
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 78/361 (21%), Positives = 153/361 (42%), Gaps = 48/361 (13%)
Query: 120 VDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDA 178
+ YVG ++ + C Y VGVLDRS+ +++ +IF ++P + G A
Sbjct: 56 LSYVGHNFGSDGTKCSSLCRYFVGVLDRSSGQMEVYNA---EIFNMQPLLSGGRRWQPRA 112
Query: 179 GKGEISAEVQANMKAMLDTRYGTKKSLR--QSKKMHALNKENDPESQKDLALKMKSVKIN 236
+ M ++ +GT K R S++M+A+ + + A + K
Sbjct: 113 -----VSWCPWQMDLCIEA-FGTSKQKRALSSRRMNAVGSDIVSTAVTKAAANVIDAKGV 166
Query: 237 KEALESTTSDTVLNV----PPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEV 292
++ D V ++ PP +A P+ Y + I+ E++ ++ +++ SE
Sbjct: 167 TALMQDVAQDDVQSISAFLPPCHEDADRPEHVYRFEDILSPAEYEALRVPAAALASVSEE 226
Query: 293 ISD------AYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAK 346
D + SFV + L D+ + A ++ L+KF Q + +
Sbjct: 227 EMDKRAEERSLCSFVLEELKFLP--TDEKSRDHKARCLWFLNTLIKFSQQKVIKK-KNPM 283
Query: 347 QHRIPKILHQKFLTSFSDAESKRLSDDKIHLLIS---------YVLVLTLHADDFRTNPT 397
P I+ +K + +F+ S ++ I IS YV+ L LH ++F+T+ T
Sbjct: 284 GPECPHIISKKLMKNFT---SLTYNNGSIQNFISASMKAKITAYVIALALHINNFQTDLT 340
Query: 398 DIAKDLRMSEFKLRDHFEKLGCKLLREKNML-----------YATLPVPLQFPKAIQRRR 446
+ D+++SE ++ D + L ++ + K ++ +LP+P Q QR+R
Sbjct: 341 ILQNDMKLSESRILDIAKALRLRVSKVKGLVGLENDQNHKLGTLSLPLPTQKAPEGQRKR 400
Query: 447 R 447
+
Sbjct: 401 K 401
>gi|301103757|ref|XP_002900964.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262101302|gb|EEY59354.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 429
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 87/413 (21%), Positives = 170/413 (41%), Gaps = 77/413 (18%)
Query: 91 PKVRVYRNM----NEKK--------NRTGRMELVVSPRDSSVDYVGTSYSGEAMAPQFCH 138
P V +RN N++K N + LV++ + V Y G ++ + F +
Sbjct: 20 PVVATFRNGPPPPNQRKDLAFEVFENPAKKQRLVIASSEK-VAYQGANFGYLGSSHDFAN 78
Query: 139 YAVGVLDRSTQTLKIVPIAANKIFRLEPRVR-GSDVADKDAGKGEISAEVQANMKAMLDT 197
YAVGV DR T+ +++ + N+++ ++ ++ S+ D + G+ + E + ++ +
Sbjct: 79 YAVGVYDRKTKEVRLCNV--NQVYVMQQAIKNASENVDDNRGEDKSFMEQRRDLVEV--- 133
Query: 198 RYGTKKS--LRQSKKMHALNKENDPESQKDLALKMKSVKINKEALE-------------- 241
+G+KKS ++++++ + +N EN + K + + LE
Sbjct: 134 -FGSKKSKRMQKNREENIVNLENISGAASVSQTLQKKISAAQRKLEEERAQDGSYTKEGA 192
Query: 242 --STTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDAYPS 299
+ T + +L PP D +A TP + Y L K + D + + V + S A +
Sbjct: 193 ALAATRNALL--PPCDVDAPTPDRVYDLTKFMDNNVMDSLTIMAEEVIQALQTASVAEYA 250
Query: 300 FVCN------RIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKI 353
N R+ DV K L +Y+ + +++ IP +
Sbjct: 251 ASLNLASLPTRLMLSLPAPYDVNKMCLVVYLAYMIDFYNSRFPLRKSAAVFSEEKGIPLV 310
Query: 354 LHQKFLTSFSDA-----------ESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKD 402
+ + L F+D +SK + DK+ L +++V+ L + F + T++ D
Sbjct: 311 IVRHLLKLFTDISEGDNGYPSYFQSKAMK-DKLSL---HLIVVALSVNGFTLDLTEVGND 366
Query: 403 LRMSEFKLRDHFEKLGC----------------KLLREKNMLYATLPVPLQFP 439
L+ S ++ + +LGC L +K + A L VPL FP
Sbjct: 367 LKKSSIHIQAYARQLGCVVEKAKADAAVYGGAASLASKKQIYRAVLSVPLHFP 419
>gi|330805470|ref|XP_003290705.1| hypothetical protein DICPUDRAFT_81424 [Dictyostelium purpureum]
gi|325079168|gb|EGC32782.1| hypothetical protein DICPUDRAFT_81424 [Dictyostelium purpureum]
Length = 379
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 151/325 (46%), Gaps = 27/325 (8%)
Query: 127 YSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAE 186
Y + + YA+G+ D++T+ LKIVP +KI +E V G + D+ G +S E
Sbjct: 66 YESQDNDSKLTKYAIGIFDKATKQLKIVP---SKILSMEQSVIGYKLT-LDSSSG-LSRE 120
Query: 187 VQANMKAMLDTRYGTKKSLRQSKKMHALNKEN-DPESQKDLALKMKSVKINKEALESTTS 245
+ + L +G+K + ++ +K+ N EN D E +K+ +KE+ E
Sbjct: 121 ERYDKVKKLAESFGSKVTKKKMQKLEMENVENLDYEKTTQSIADVKNELADKESDEKP-- 178
Query: 246 DTVLNVPPYDANATTPQQAYPLDKIILKGEWDFV--QDIFNHVSAGSEVISDAY-PSFVC 302
++P +DA + Y ++ I+ + + Q + + SE + AY P +
Sbjct: 179 ---FDLPDFDAETNKADEIYNIEAILPPRIFFAINHQTFLDILYEKSE--APAYLPEYFK 233
Query: 303 NRIHKLREIQDD---VEKQTLASIFSYITHLVKFKDQHS--MDGGASAKQHRIPKILHQK 357
N++ +++ +D+ V K + + Y L+K + H + G + + I L
Sbjct: 234 NQLDLMKDEKDEDLIVYKCKILTFMWYTMILMKSRGSHDPLLKEGCT---NDIISFLVSL 290
Query: 358 FLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFR-TNPTDIAKDLRMSEFKLRDHFEK 416
F + + + DDK+ + +Y+ + L +DF+ ++ T +++ L ++ HF +
Sbjct: 291 FGSKTGNKKYIISQDDKLKIY-NYLAIFALKLEDFQISDITLLSQALSLTSNTFEKHFAR 349
Query: 417 LGCKLLR-EKNMLYATLPVPLQFPK 440
+GCK++R + L PLQ PK
Sbjct: 350 VGCKIMRVNADKRSVRLTAPLQLPK 374
>gi|393236330|gb|EJD43879.1| RNA polymerase I associated factor, A49-like protein [Auricularia
delicata TFB-10046 SS5]
Length = 411
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 85/374 (22%), Positives = 161/374 (43%), Gaps = 55/374 (14%)
Query: 112 VVSPRDSSVDYVGTSYSGEAMA---PQF----------CHYAVGVLDRSTQTLKIVPIAA 158
V +P D++ + G++ GE +A PQ Y VG+ D++T TL +
Sbjct: 39 VEAPTDTAFNLYGSATQGELIAGETPQVEFQGQEHSVGNQYLVGIYDKTTNTLCVRRAPL 98
Query: 159 NKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKK-------M 211
+ + R R++ + A A + L + +GTKK+ + +
Sbjct: 99 HVLERRVKRLKTFKTSTDAAADAFQQARAE------LGSTFGTKKAQAAIRAAARNKVDV 152
Query: 212 HALNKENDPESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKII 271
+A+ D Q + ++ K++ +EA + ++ + VPPYD +AT Q AYPL+++I
Sbjct: 153 NAMRSVAD-HLQARIEVQTKALPTKEEAEDRADAERL--VPPYDLSATQVQDAYPLNQLI 209
Query: 272 LKGEWDFVQ-DIFNHVSAGSE---VISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYI 327
E +Q S+ +E ++ ++ + + L + +T I Y+
Sbjct: 210 PDAEMSVIQVRKLQDASSAAERRMLLPSRANGWLGHMLDSLFANTAERPDRTKLKIVWYV 269
Query: 328 THLVKF-------KDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIHLLIS 380
+ L+ F K + ++ +A + L +F+ DA+ + L+ L +
Sbjct: 270 SALLAFRRVAPKSKTRAALYDALTAVPQAVVDGLAARFMEEGRDAQLQ-LTPAMETKLAT 328
Query: 381 YVLVLTLHADDFRTNPTDIAKDLRMSEF-KLRDHFEKLGCKLL------REKNML----- 428
+ L L LHAD F + +A+ + + K+ F+ LGCK+ R+K +
Sbjct: 329 WTLALMLHADGFCADCALVAQTVNNAPVPKVIGWFKALGCKVGVLPAAERQKRGVEESDT 388
Query: 429 --YATLPVPLQFPK 440
+A L PL+FPK
Sbjct: 389 AKWAMLRAPLEFPK 402
>gi|389639120|ref|XP_003717193.1| hypothetical protein MGG_06381 [Magnaporthe oryzae 70-15]
gi|351643012|gb|EHA50874.1| hypothetical protein MGG_06381 [Magnaporthe oryzae 70-15]
gi|440490141|gb|ELQ69728.1| hypothetical protein OOW_P131scaffold00126g14 [Magnaporthe oryzae
P131]
Length = 437
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 106/473 (22%), Positives = 194/473 (41%), Gaps = 89/473 (18%)
Query: 26 KKNKKRKKDKAN------TTIDEQPEPELEPERVKAKVQFIPEQPNKAPPLVGYFPSIYK 79
+K +KR +D ++ ID+ P+ +K +P +PP++ P +
Sbjct: 3 EKKRKRTEDGSSQKTSKKAAIDDVVSSSALPQNIKVSSLV---RPKLSPPVIATAPGLSV 59
Query: 80 PDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVV-SPRDSSVDYVG---TSYSGEAMAPQ 135
P + P ++ + ++ +N ++++ S S+DY S +GE
Sbjct: 60 ----SPSVQFNPYTKLRKASSKSRNAPVLGDILLHSSSHRSLDYTAREEQSQNGEG---- 111
Query: 136 FCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANM--KA 193
F + +GV D T L++V A K+ VRGS + + + + E + NM +
Sbjct: 112 FLRHYIGVFDPKTGELEVV--EARKV-----TVRGSVRSQQAPAEAMSAIESKTNMDMRT 164
Query: 194 MLDTRYGTKKSLRQ--SKKMHALNKENDPESQKDLALKMKSVKINKEALESTTSDTVLNV 251
L +GTKK+ + SK +A+ N+ S+ A + AL ++ N+
Sbjct: 165 DLGQAFGTKKAKKALVSKVENAITAINNASSRDSGA--------GEAALMASIKTAAANM 216
Query: 252 PPYDANATTPQQAYPLDKIILKGEWDF--VQDIFN-HVSAGSEVISDAYP---------- 298
P D A P + KG +D +QD+++ GS+V+ +A P
Sbjct: 217 PTRDELQAAVDGAKP----VPKGNYDAAEIQDVYDPDQIIGSDVL-NAIPVRDWQTANKN 271
Query: 299 --------SFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKF-KDQHSMDGGASAKQHR 349
+V NR+ ++ E + +++ I Y+ L+ F K G R
Sbjct: 272 DENVQLTSRYVANRLPRVGEHAESLKR---LRILRYLYFLMTFIKIAKPGKNGVRKLPPR 328
Query: 350 ---------IPKILHQKFLTSFSDAESKRLSDDKIH--LLISYVLVLTLHADDFRTNPTD 398
P ++ F+D R KIH L+++ VL D F + D
Sbjct: 329 DKLREALSPAPDVVLDSLRHKFADGTQMR----KIHADLIMTTCCVLASIIDSFEVDTFD 384
Query: 399 IAKDLRMSEFKLRDHFEKLGCK----LLREKNMLYATLPVPLQFPKAIQRRRR 447
+ +DL++ + +L +F ++G + + +K A L +PLQFPK RR+
Sbjct: 385 LREDLQLEQKQLNSYFAEIGARTKPVVNGDKKTTIAKLALPLQFPKVSMGRRK 437
>gi|331239255|ref|XP_003332281.1| hypothetical protein PGTG_14577 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309311271|gb|EFP87862.1| hypothetical protein PGTG_14577 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 429
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 138/316 (43%), Gaps = 42/316 (13%)
Query: 137 CHYAVGVLDRSTQTLKIVPIAANKIFRLEPRV-RGSDVADKDAGKGEISAEVQANMKA-- 193
C Y +G+ S L + P ++++L P V R DV D ++ + N +A
Sbjct: 74 CSYMLGLHVASAGRLTLFP---TQLYQLRPVVKRLRDVDD-----NRLTEQATDNYEARR 125
Query: 194 MLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKS-VKINKEALESTTS-----DT 247
L T +GTKK+ R + NK DPE+ L ++ + + N L S T D
Sbjct: 126 TLGTTFGTKKARRALQAAAR-NKV-DPETMTHLEGQISAAIAENSSCLPSATVQAQEVDA 183
Query: 248 VLNVPPYDANATTPQQAYPLDKIILKGEWDFV--QDIFNHVSA--GSEVISDAYPSFVCN 303
+PPY+ NA P+ Y L ++ E + + I N +A + + ++ FV +
Sbjct: 184 NRPIPPYNINAANPKDVYLLSDVVTNLELNSIPMGPILNARTAEDAARCLPTSHSQFVNS 243
Query: 304 RIHKL-REIQD---DVEKQTLASIFSYITHLVKFKDQH-----------SMDGGASAKQH 348
R++ L + D D ++ I YI++L+ + H ++D ++
Sbjct: 244 RLNALWKRCPDGKLDKKETKRLRILIYISYLIAIRRLHKFSRDSISNKLAIDQDSTTPDS 303
Query: 349 RIPKILH---QKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRM 405
I IL+ + TS + S KI L SY+ VL L D++ T + ++ DL+
Sbjct: 304 IIDGILNRFTEPVKTSDGSLKHNLTSFSKIKLY-SYIAVLCLIHDEYMTRVSGLSDDLQE 362
Query: 406 SEFKLRDHFEKLGCKL 421
+ D F LGCK+
Sbjct: 363 PTKSINDIFLNLGCKM 378
>gi|296190327|ref|XP_002743143.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Callithrix
jacchus]
Length = 419
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/326 (20%), Positives = 154/326 (47%), Gaps = 41/326 (12%)
Query: 108 RMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEP 166
R + +++ + YVG ++ A+ C + VG+L++++ +++ ++F ++P
Sbjct: 55 RNQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDA---ELFNMQP 111
Query: 167 RVRGSDVADKDAGKGEISAEVQA-NMKAMLDTRYGTKKSLRQSKKMHA--LNKENDPESQ 223
V + E+ E Q + +D+ + +Q + ++A +NK
Sbjct: 112 LFSDESV------ESELVQESQTKTYREKMDSCIEAFGTTKQKRALNARRMNKVGGDSLN 165
Query: 224 KDLALKMKSVKINKEALESTTSDTVLN--------VPPYDANATTPQQAYPLDKIILKGE 275
+ +A +++ I+ + + + SD + N +PP +A P+ Y + ++ E
Sbjct: 166 RAVAKAAETI-IDTKGVTALVSDAIHNDLQGDSLYLPPCYDDAAKPEDVYKFEDLLSPVE 224
Query: 276 WDFVQ---DIFNHVSAGSEVI----SDAYPSFVCNRIHKLREIQDDVE-KQTLASIFSYI 327
++ +Q + F +V++ E++ +++ +FV I L+ + +VE + A ++
Sbjct: 225 YEALQSPSEAFRNVTS-EEILKMTEENSHCTFV---IDALKSLPSNVESRDHQARRIWFL 280
Query: 328 THLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-----DAESKRLSDDKIHLLIS-Y 381
L+KF+ Q + S IP I++ K L F+ + + L D + I+ Y
Sbjct: 281 DTLIKFRAQKVVKRKNSLGPD-IPHIINTKLLKHFTCLTYNNGRLRNLISDSMKAKITAY 339
Query: 382 VLVLTLHADDFRTNPTDIAKDLRMSE 407
V++L LH +DF+ + T + +DL++SE
Sbjct: 340 VIILALHINDFQIDLTMLQRDLKLSE 365
>gi|340905265|gb|EGS17633.1| RNA polymerase I-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 443
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 98/422 (23%), Positives = 182/422 (43%), Gaps = 74/422 (17%)
Query: 63 QPNKAPPLVGYFPSIYKPD------VDHPDEEMRPKVRVYRNMNEKKNRTGRMELVV-SP 115
+P +PP+V P I PD D D++ K R + + E+ + S
Sbjct: 43 KPQVSPPVVALTPGISLPDGFLFDVYDKADQQPSAKRR------KSGGTPAQSEMALFSS 96
Query: 116 RDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRG---SD 172
+ S+DY + + H+ + ++D T +++V A K+ VRG S
Sbjct: 97 KHRSIDYTAREERHKTVDQVMNHF-LAIIDPKTGQIEVV--QAKKMA-----VRGTVRSK 148
Query: 173 VADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKS 232
A +A +G+ A K L +GTKK+ KK EN LA + +
Sbjct: 149 QASSEAMEGDAGKPTFAEQKMELGEAFGTKKA----KKAIQAVAEN-----AMLAARSRG 199
Query: 233 VKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDF--VQDIFN-HVSAG 289
K++++A T+ + + A Q A + + + +G +D +QD++ G
Sbjct: 200 -KLDEDA--RALVHTIKDSSEHMATREELQAAVDMARPVPRGNFDAEDIQDVYVPREIIG 256
Query: 290 SEVISDAYP------------------SFVCNRIHKLREIQDDVEK-----QTLASIFSY 326
+EV+ +A P FV NRI+++ ++ VE+ L +I Y
Sbjct: 257 AEVL-NAIPILEWQEKAKKNEPLLVPSRFVANRINRVASNENAVERLKVLRYLLWTIVFY 315
Query: 327 ITHLVKFKDQHSMDGGASAKQHRI----PKILHQKFLTSFSDAESKRLSDDKIHLLISYV 382
T + K++ + + G K ++ P+I+ + FSDA R + + LL+++
Sbjct: 316 AT-TTQGKERGTRNIGKRDKLRQVMVGAPEIVIENIRRKFSDAGVMRKTH--VDLLMTHC 372
Query: 383 LVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNM----LYATLPVPLQF 438
D+F N D+ +DL++ + ++ +F ++G ++ ++K A L +PLQF
Sbjct: 373 CAFACIVDNFEVNTLDLREDLKLEQKQINQYFMEIGARIKQKKTGDKLDTIAKLALPLQF 432
Query: 439 PK 440
PK
Sbjct: 433 PK 434
>gi|148670463|gb|EDL02410.1| polymerase (RNA) I polypeptide E, isoform CRA_a [Mus musculus]
Length = 485
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 107/223 (47%), Gaps = 30/223 (13%)
Query: 238 EALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQ---DIFNHVSAGSEVI- 293
+A++ D VL +PP A+A P+ Y + I+ E+D ++ + F V+ SE I
Sbjct: 253 DAMQDDLQDGVLYLPPCYADAAKPEDVYRFEDILSPAEYDALESPSEAFRKVT--SEDIL 310
Query: 294 ----SDAYPSFVCNRIHKLREIQ-DDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQH 348
+++ S+V I L+ + D+V + A ++ L++F+ Q + G A
Sbjct: 311 KMIEENSHCSYV---IEMLKSLPIDEVHRNRQARSIWFLDALIRFRAQKVIKG-KRALGP 366
Query: 349 RIPKILHQKFLTSFS-----DAESKRLSDDKIHLLI-SYVLVLTLHADDFRTNPTDIAKD 402
IP I++ K L F+ + + L + I SY ++L LH ++F+ + T + KD
Sbjct: 367 GIPHIINTKLLKQFTCLTYNNGRLQNLISSSMRAKITSYAIILALHINNFQVDLTALQKD 426
Query: 403 LRMSE---------FKLRDHFEKLGCKLLREKNMLYATLPVPL 436
L++SE +L+ +K+ RE++ TL VPL
Sbjct: 427 LKLSEKRMIEIAKAMRLKISKQKVSLADGREESHRLGTLSVPL 469
>gi|62900729|sp|Q8K202.2|RPA49_MOUSE RecName: Full=DNA-directed RNA polymerase I subunit RPA49;
Short=RNA polymerase I subunit A49; AltName:
Full=DNA-directed RNA polymerase I subunit E; AltName:
Full=RNA polymerase I-associated factor 1; AltName:
Full=RNA polymerase I-associated factor 53
Length = 482
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 107/223 (47%), Gaps = 30/223 (13%)
Query: 238 EALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQ---DIFNHVSAGSEVI- 293
+A++ D VL +PP A+A P+ Y + I+ E+D ++ + F V+ SE I
Sbjct: 250 DAMQDDLQDGVLYLPPCYADAAKPEDVYRFEDILSPAEYDALESPSEAFRKVT--SEDIL 307
Query: 294 ----SDAYPSFVCNRIHKLREIQ-DDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQH 348
+++ S+V I L+ + D+V + A ++ L++F+ Q + G A
Sbjct: 308 KMIEENSHCSYV---IEMLKSLPIDEVHRNRQARSIWFLDALIRFRAQKVIKG-KRALGP 363
Query: 349 RIPKILHQKFLTSFS-----DAESKRLSDDKIHLLI-SYVLVLTLHADDFRTNPTDIAKD 402
IP I++ K L F+ + + L + I SY ++L LH ++F+ + T + KD
Sbjct: 364 GIPHIINTKLLKQFTCLTYNNGRLQNLISSSMRAKITSYAIILALHINNFQVDLTALQKD 423
Query: 403 LRMSE---------FKLRDHFEKLGCKLLREKNMLYATLPVPL 436
L++SE +L+ +K+ RE++ TL VPL
Sbjct: 424 LKLSEKRMIEIAKAMRLKISKQKVSLADGREESHRLGTLSVPL 466
>gi|328853931|gb|EGG03066.1| hypothetical protein MELLADRAFT_109505 [Melampsora larici-populina
98AG31]
Length = 465
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 84/379 (22%), Positives = 157/379 (41%), Gaps = 86/379 (22%)
Query: 137 CHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVA------DKDAGKGEISAEVQAN 190
C+Y +G+ QTL + P + L P V+ A ++ + + +
Sbjct: 104 CNYLIGLHSIQDQTLTLFPTS---FHELRPTVKQLKDAINLKKQEEKEDEEKEGHQTHKA 160
Query: 191 MKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDL------ALKMKSVKINKEALESTT 244
+ ML T +G+KK+ R + DP+S + A+ S+ + E+
Sbjct: 161 SRNMLGTTFGSKKARRAIQAAAR--DTIDPDSMMHVQSHLKEAITTSSITLTNSIQEANR 218
Query: 245 SDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSE------VISDAYP 298
++ +PPY+ NAT+P++ Y L ++ E + + H++ S + ++
Sbjct: 219 IESEKPIPPYNINATSPKEVYKLSDVVTNLELNSIP--IAHITYCSSPEQAIRNLPNSKS 276
Query: 299 SFVCNRI----HKLREIQDDVEKQTLASIFSYITHLVKF--------KDQ------HSMD 340
+F+ RI ++ E + + +++ I YI++L+KF KD+ D
Sbjct: 277 NFINKRIESCWNRYPEGKLNKQEEQRLRILVYISYLIKFHHHRFKIKKDKLKELLSGKRD 336
Query: 341 GGASAKQHRIPKILH---------QKFL-TSFSDAESKRLSDDKIHLLISYVLVLTLHAD 390
G S + +L Q+FL T+FS+ + L+SY+ L L +
Sbjct: 337 GSESCPDSILDGLLERFTEKELGTQEFLMTTFSNRK-----------LLSYICTLCLIHE 385
Query: 391 DFRTNPTDIAKDLRMSEFKLRDHFEKLGCKL-----------LREKNML----------- 428
++ T++A DL+ + L + F LGCK+ + E L
Sbjct: 386 EYTCAITELADDLKEDKKSLTEIFRSLGCKIDKLSSGELTVQMEEAKKLGKDTKEIDKQR 445
Query: 429 YATLPVPLQFPKAIQRRRR 447
A L VPL FP+ ++R+R
Sbjct: 446 LARLSVPLVFPEPRKKRQR 464
>gi|225678306|gb|EEH16590.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 497
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 118/513 (23%), Positives = 204/513 (39%), Gaps = 113/513 (22%)
Query: 24 PKKKNKKR----KKDKANTTIDEQPEPELEPERVKAKVQFIPEQPNKAPPLVGYFPSIYK 79
P+KK K++ K D+ N + L P KVQF+ E N P++ P I
Sbjct: 8 PEKKTKRKRASEKTDRPNK------KAALAPVAATVKVQFV-ENTNGLLPVIASTPGINV 60
Query: 80 PD------VDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAMA 133
P P ++ PK R++ E N ++ P+ +D+VG E +
Sbjct: 61 PSSVPLTAYTKPRQKRLPKHNATRSV-EILNSELLLQSSAHPK---LDFVGKEGENE-LD 115
Query: 134 PQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDV-ADKDAGKG-EISAEVQANM 191
+ HY V + D TL++ + RV D+ +++ G+G IS Q
Sbjct: 116 TLWNHY-VAIYDPDAGTLQLAEARKMTVRGCVRRVPRKDMNGEEEDGEGVAISNWAQ--- 171
Query: 192 KAMLDTRYGTKKSLR--QSKKMHALNKENDPESQKDLALKMKSVKINKEALES---TTSD 246
+ L +GTK+S + QS +AL S I KEA+ S T
Sbjct: 172 RTALTEAFGTKQSRKAIQSLAANALLSSAPAGSGPSAVESALLSSIPKEAVTSPQKTAQA 231
Query: 247 TVLNVPPY---DANATTPQQAYPLDKIILKGEWDF----VQDIFNHVSAGSEVISDAYPS 299
+ V P + +AT P Y ++ ++ G V+D + + AG V+S +
Sbjct: 232 EIQAVKPLPQPNLSATHPSDVYAIETLVPNGLATLRTMHVKDWQDAIEAGEPVLSSSR-- 289
Query: 300 FVCNRI-HKLREIQDDVEKQTLASIFSYITHLVKF-------KDQHSMDGGASAKQHRIP 351
FV +R+ H +R +T+ + +I L++ + GA+ + +P
Sbjct: 290 FVAHRVEHVVRS-----RNKTMLQLLRFIMILIELSRSLKPSRGAGPATPGAAGTKKLLP 344
Query: 352 KILHQKFLT----------------------SFSDAESKR-------LSDDKIHLLISYV 382
+ ++ L+ SF DA ++ LS I LL + +
Sbjct: 345 REDLRRILSGIPPSKGAAAAPTDPRTPLLPDSFLDALRRKFVPQGSFLSKSDITLLHTTI 404
Query: 383 LVLTLH--------ADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLY----- 429
L+LH A++ T+P D+ DLR+ ++ +F +LGCK+ + + +
Sbjct: 405 CALSLHIPPETGFAANELATDPADLRDDLRLEHQTIQQYFRELGCKVDKPRESEFAKWGV 464
Query: 430 -----------ATLPVPLQFPK-----AIQRRR 446
A L VP++FPK ++RR+
Sbjct: 465 KSKAEAGARRIAKLRVPVEFPKVSRGPGVRRRK 497
>gi|395514405|ref|XP_003761408.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Sarcophilus
harrisii]
Length = 397
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 81/360 (22%), Positives = 161/360 (44%), Gaps = 52/360 (14%)
Query: 122 YVGTSYS-GEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDA-G 179
YVG ++ G C Y VGVL + + ++I ++F ++P V D+ D + G
Sbjct: 55 YVGNNFGVGALKCNNLCRYFVGVLSKDSDQMEIYDA---ELFNMQP-VFSDDLKDSETLG 110
Query: 180 KGEISAEVQANMKAMLDTRYGTKKSLR--QSKKMHALNKEN----DPESQKDLALKMKSV 233
S Q + +GT K R S++M+ + E ++ +++ +
Sbjct: 111 NQNKSYRDQVDFCI---EAFGTTKQKRALSSRRMNKVGSETLNIAVAKAAENIIDEKGVT 167
Query: 234 KINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQ---DIFNHVSAGS 290
+ +A + D +PP A+ P++ Y + ++ E+ ++ + +V++
Sbjct: 168 ALVNDASQDDLQDESAYLPPCHADGGKPEEIYKFEDLLSPAEFKALEVPSAVLKNVTS-E 226
Query: 291 EVI----SDAYPSFVCNRIHKLREIQDDVE-KQTLASIFSYITHLVKFKDQHSMDGGASA 345
E++ ++Y FV I L+ + D E + A ++ L+KF+ Q + S
Sbjct: 227 EIVKMMEENSYCPFV---IEALKNLPLDEESRDRKARCLWFLNILIKFRSQTVIRKKNSL 283
Query: 346 KQHRIPKILHQKFLTSFSDAESKRLSDDKIHLLIS---------YVLVLTLHADDFRTNP 396
+P I++ K L +F+ S ++ + LIS YV+ L LH +DF+T+
Sbjct: 284 GPD-VPHIINNKLLKNFT---SLTYNNGSLRNLISESMKAKITAYVIALALHINDFQTDL 339
Query: 397 TDIAKDLRMSE---------FKLRDHFEKLGCKLLREKNMLYATLPVPLQFPKAIQRRRR 447
T + +D+++SE +L+ +KL + E++ TL +PL A+ R++R
Sbjct: 340 TMLQRDMKLSEKRIIEIAKAMRLKISKKKLSLESGGEEDHKVGTLSIPL---PALPRQKR 396
>gi|405950575|gb|EKC18554.1| DNA-directed RNA polymerase I subunit RPA49 [Crassostrea gigas]
Length = 374
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 95/369 (25%), Positives = 158/369 (42%), Gaps = 58/369 (15%)
Query: 100 NEKKNRTGRMELVVSPRDSSVDYVGTSYSGEA-MAPQFCHYAVGVLDRSTQTLKIVPIAA 158
N KK + +M LV D S YVG +Y A Q C Y VGVLD++T +KI
Sbjct: 42 NNKKLKDRKM-LVAETTDMS--YVGQNYGPLASTMQQNCKYYVGVLDKTTGKMKICDA-- 96
Query: 159 NKIFRLEPRVRGSDVADKD---AGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHAL- 214
+IF++ P+ SD+ D+ + ++ + ML + +G+KK K AL
Sbjct: 97 -EIFQMHPK--PSDIDDEVETFSLPSTVTEKTFVEKNDMLTSAFGSKK------KQRALE 147
Query: 215 NKENDPESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKG 274
++ + K L M SV ++E V V P + AT D +
Sbjct: 148 SRLKNQIKGKALDKAMSSVLSQASSIEP-----VQFVHPNEKQATAEASGVFFDATL--- 199
Query: 275 EWDFVQDIFNHVSAGSEVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHL---- 330
D +Q +++S + +R+ K E + E+ T Y+ HL
Sbjct: 200 --DTIQQWRKENKYPKQILS------LLSRMPKTEERRS--EQATYIMYLYYLIHLHNLK 249
Query: 331 ---VKFKDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIH-LLISYVLVLT 386
++ KD D + H L ++F + S +R+ ++ L+ ++LVL
Sbjct: 250 QKQLRDKDPLPTDWPDHVRFH-----LLKRFTQTISGTSKQRIMPARLKDKLVCHILVLC 304
Query: 387 LHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGC-----KLLREK---NMLYATLPVPLQF 438
L ++F T++ DL S L H + LGC K+ E+ ++ +ATL +PLQ
Sbjct: 305 LFLEEFSLELTNLQTDLSKSHEILYKHCQILGCSTKVKKVTTEEGSTSVRWATLSLPLQL 364
Query: 439 PKAIQRRRR 447
P +R+R+
Sbjct: 365 PTQERRKRK 373
>gi|296418137|ref|XP_002838698.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634659|emb|CAZ82889.1| unnamed protein product [Tuber melanosporum]
Length = 434
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 132/304 (43%), Gaps = 45/304 (14%)
Query: 179 GKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKS-VKINK 237
GKG + + V + + L +GTKKS ++ +++ LNK + + KD+ + S V+ N
Sbjct: 133 GKGVVMSNVDS--RTALGKEFGTKKSQKRLRELE-LNKIDVSDMGKDITTSIVSQVEANT 189
Query: 238 EALESTT--SDTVLN---VPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEV 292
+ + + T + + +P + +A P + Y L+ II E++ + G E+
Sbjct: 190 KDMPTATELGNQIRENKPIPKVNHDAKHPNEVYNLEDIIGSDEYNVIW--VREWERGEEL 247
Query: 293 ISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPK 352
S + SFV +RI KL E ++ + L I YI+ ++ F G R+ K
Sbjct: 248 RSKS--SFVQSRIRKLSEDKNKKHTRPL-KILRYISFMIDFYLFQQRGRGRLPAMDRVKK 304
Query: 353 ------ILHQKFLTSF----------SDAESKRLSDDKIHLLISYVLVLTLHADDFRTNP 396
++ + F F SD E+ +S + ++ ++ VL L D + +
Sbjct: 305 ALSIDHVIAEGFFRRFTEKTISGEGGSDKETYAVSPALANKILYHMAVLCLMVDQYDVDI 364
Query: 397 TDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLY---------------ATLPVPLQFPKA 441
++ DL + +L F+++GC + Y A L +PL+FPK
Sbjct: 365 FELKNDLGVQPKELTLAFKEVGCSIRELTKPQYTAMKMTKAEAAQHKRAVLKIPLEFPKP 424
Query: 442 IQRR 445
RR
Sbjct: 425 PTRR 428
>gi|396495235|ref|XP_003844497.1| similar to DNA-directed RNA polymerase I 49 kDa polypeptide
[Leptosphaeria maculans JN3]
gi|312221077|emb|CBY01018.1| similar to DNA-directed RNA polymerase I 49 kDa polypeptide
[Leptosphaeria maculans JN3]
Length = 449
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 90/378 (23%), Positives = 150/378 (39%), Gaps = 68/378 (17%)
Query: 120 VDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPI---AANKIFRLEPRVRGSDVADK 176
+DY+ + Q Y V V D ST L++VP+ R E + A K
Sbjct: 88 LDYLAQEEHDGSSESQLKDY-VAVYDPSTSKLQVVPVKRLVVRSTLRSETEEMREEQARK 146
Query: 177 DAGKGEISAEVQANMKAMLDTRYGTKKSLR--QSKKMHAL--NKENDPESQKDLAL---- 228
+A G I+A+ +A L + +G+KKS + + + ++A+ K DP + ++ A+
Sbjct: 147 EAQLGNITAK-----RAALASEFGSKKSRKALEDRTLNAIHSGKPGDPSTAQNDAVAENV 201
Query: 229 --KMKSVKI---NKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDF--VQD 281
M + + K LE+ D P + A P Y +D I+ G V+D
Sbjct: 202 LTNMANTGVPMPTKAELEAAV-DKSKPRPTPNLAAEYPGDVYTIDNIVGSGLMTMLEVKD 260
Query: 282 IFNHVSAGSEVISDAYPSFVCNRIHKL---REIQDDVEKQTLASIFSYITHLVKFKDQHS 338
+ +AG V FV RI KL ++IQ + +I + F
Sbjct: 261 WVDASTAGQGV--SVSSKFVAKRIVKLARGKQIQK-------LKVLRFILLCINFNAALQ 311
Query: 339 MDGG------------ASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLT 386
GG +A P F+ +E+ + I L++++
Sbjct: 312 GSGGNKPKKIPIKGKLEAAMGDDTPAGCVLAIRRKFA-SENGDMPRWNIDNLMTHIAAAA 370
Query: 387 LHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKL---------------LREKNMLYAT 431
L DD + D+ +DL++ +++ +F +LGCKL N A
Sbjct: 371 LIVDDHEVDINDLREDLKLENKEIKQYFLELGCKLSAPTQTDMAKWKLTKAESANHFIAK 430
Query: 432 LPVPLQFPK---AIQRRR 446
L +PL+FPK A Q+RR
Sbjct: 431 LKLPLRFPKVGGARQKRR 448
>gi|397615958|gb|EJK63738.1| hypothetical protein THAOC_15585 [Thalassiosira oceanica]
Length = 451
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 107/463 (23%), Positives = 168/463 (36%), Gaps = 87/463 (18%)
Query: 51 ERVKAKVQFIPEQPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRME 110
+R A + +P+ P++ FP + DE PK + R +N K+
Sbjct: 9 KRKDAPIAVSVSEPSSTDPVLISFPRGLPISIIEEDEGDLPKFKC-RRLNSKRG------ 61
Query: 111 LVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIA-ANKIFRLE---- 165
LVV+ D + Y T+ G + V VLD+ +TLK+VP A IF L
Sbjct: 62 LVVTGEDDTCTYSATA-EGRGHDGRLTKTYVCVLDKKARTLKLVPAAEKGTIFALNQTVK 120
Query: 166 ----PRVRGSD--VADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKEND 219
P V+ V D + G SA + ML +G+KK ++ K A N+ N
Sbjct: 121 EYYTPNVKHGTRLVGDGNVGDSGTSATDRVK---MLVESFGSKKK-QKVMKSRAANRVNI 176
Query: 220 PESQKDLALKMKSV-------KINKEALESTT-----SDTVLN------VPPYDANATTP 261
L SV + N++ +E SD L+ +PP++ A P
Sbjct: 177 NAVVGAGTLMAASVAKQEGISEANRKGMEEGGEQVNPSDAALDAARRNLLPPFNEKAEKP 236
Query: 262 QQAYPLDKIILKGEWDFVQDIFNHVSAG----------------SEVISDAYPSFVCNRI 305
+ Y + II W V I G ++ +D +PS
Sbjct: 237 FEVYDAETIIGTSAWTRVSRIVTKKVVGESEQMNNTDDLILKLMGKINADKFPS------ 290
Query: 306 HKLREIQDDVEKQTLASIFS-----YITHLVKFKDQHSMDGGASAKQ-----------HR 349
+R + + + + Y+ KF + G K H
Sbjct: 291 --IRTLMGSINMSKTSGTYKMKVAFYVYLATKFNNMLGNRGEIRGKTLDDCIHSCHLPHD 348
Query: 350 IPKILHQKFLTSF-SDAESKRLSDDKIHLLISYVLVLTLHADDFR---TNPTDIAKDLRM 405
+ L + F T+ D E ++S K L+ +L+L + A R +N I KDL +
Sbjct: 349 VGYKLFETFGTAMQGDREGYQVSKPKRDSLLVQILILYVMAHGKRMKVSNLGPIFKDLNI 408
Query: 406 SEFKLRDHFEKLG--CKLLREKNMLYATLPVPLQFPKAIQRRR 446
+ + + G CK A L VPL FP+ RR
Sbjct: 409 RAKEGVERLRQAGFECKKSNSTGEYDACLNVPLTFPRPKLARR 451
>gi|302784470|ref|XP_002974007.1| hypothetical protein SELMODRAFT_18694 [Selaginella moellendorffii]
gi|300158339|gb|EFJ24962.1| hypothetical protein SELMODRAFT_18694 [Selaginella moellendorffii]
Length = 101
Score = 57.0 bits (136), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 8/95 (8%)
Query: 69 PLVGYFPSIYKPDVDHP--DEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTS 126
P++ YFP+ + P P D++ P +Y + + +M+LVV P +VD+VG +
Sbjct: 13 PILAYFPTPFDPCAQQPTKDDQSDPP-ELYAS-----TKNSQMQLVVRPPGGNVDFVGAN 66
Query: 127 YSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKI 161
+ EA A +A+GV D+ TLKIVP+ +NK+
Sbjct: 67 VNSEAGAWNPTMFALGVFDKEEGTLKIVPVVSNKV 101
>gi|449016253|dbj|BAM79655.1| hypothetical protein CYME_CMG151C [Cyanidioschyzon merolae strain
10D]
Length = 507
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 117/273 (42%), Gaps = 63/273 (23%)
Query: 235 INKEA----LESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEW--DFVQDIFNHVSA 288
I++EA L T+++V VPPY++ ATTP+ AYPL L + + + S
Sbjct: 235 ISREAPPPSLREATTESVRLVPPYNSEATTPETAYPLLGGCLPSRFFSAYKSNATELESL 294
Query: 289 GSEV--ISDAYPSFVCNRIHKLREIQDDVEK-----------QTLASIFS-----YITHL 330
GS++ F +R E +E+ T AS+ S THL
Sbjct: 295 GSDMKYAKSLREQFTSSRKTADTETATSLEQPPASAAAEALPSTTASVGSNPLLQRCTHL 354
Query: 331 -----------------VKFKDQHSMDGGAS---AKQHRIPKILHQKFLTSFSDA---ES 367
V +H + G + +P L + L F+ A E+
Sbjct: 355 YLWILLECYHRWPRQLRVPASREHGLSGDTADVPEPLRWLPSWLGKLLLEIFTQADSTET 414
Query: 368 KRLSDDKIHLLISYVLVLTLHADDFRTNPTD-IAKDLRMSEFKLRDHFEKLGCKLLR--- 423
KR+ + + ++ ++LVL LH F+ P D +A+ LR+ + +F+ +G + R
Sbjct: 415 KRIVEKE--RMLHHILVLYLHCSGFQDQPVDALAEALRLPPARCATYFKYMGLSVRRVRS 472
Query: 424 ---------EKNMLYATLP-VPLQFPKAIQRRR 446
++ L+ +L +PLQFP+A++R+R
Sbjct: 473 AAPNSPSGANRSGLFVSLDRLPLQFPRAVRRQR 505
>gi|392576370|gb|EIW69501.1| hypothetical protein TREMEDRAFT_62362 [Tremella mesenterica DSM
1558]
Length = 424
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 139/339 (41%), Gaps = 51/339 (15%)
Query: 137 CHYAVGVLDRSTQTLKIVP-----IAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANM 191
C Y + D STQ L I P + A+++ RL+ S D AE +A
Sbjct: 101 CSYLPAIYDPSTQQLHIHPNAPLYLLAHQVKRLKQSQMSSPSKD--------PAEYRARR 152
Query: 192 KAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVKIN-KEALESTTSDTVLN 250
+ +T +GT+K+ Q K E K M+ VK + E++ D
Sbjct: 153 NDLGET-FGTRKAKNQIKAQ---------ERNKVDVRAMEGVKGHLMESIGEKVMDEEGP 202
Query: 251 VPPYD----ANATTPQQA--YPLDKIILKGEWDFVQDIFNHVSAGS----EVISDAYPSF 300
VPP + N T + YP + +I EWD + S + + +F
Sbjct: 203 VPPSELIPIPNLETSDSSLVYPREVLIPNNEWDSISLSSFRSSTSDIQRLQTLPHRRSTF 262
Query: 301 VCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQ----HSMDGGASAKQHRIPKI--- 353
+ N+I + +K T+ Y++ L F D H + G + Q ++P +
Sbjct: 263 IKNKIVSIMNETSSSKKNTMTKYIIYLSSLFAFLDLSSQLHKLSG--TELQDKLPGVSPQ 320
Query: 354 ----LHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFK 409
L +F + + ++++ L++++ + L D + T+ IA DL+M+ K
Sbjct: 321 IISGLCIRFGEQTNGGKRWKVTEMTKMKLLAWICTICLAVDGWTTDVLRIASDLKMTPNK 380
Query: 410 LRDHFEKLGCKLLRE----KNMLYATLPVPLQFPKAIQR 444
+ D F+ LGCK+ N ATL P+ FPK +R
Sbjct: 381 VVDIFKSLGCKVEPAPPPGTNSRKATLKAPVIFPKPKRR 419
>gi|169611875|ref|XP_001799355.1| hypothetical protein SNOG_09052 [Phaeosphaeria nodorum SN15]
gi|160702386|gb|EAT83244.2| hypothetical protein SNOG_09052 [Phaeosphaeria nodorum SN15]
Length = 415
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 84/369 (22%), Positives = 153/369 (41%), Gaps = 54/369 (14%)
Query: 111 LVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRG 170
L+ S S +DY + Q Y VGV D +T+ L++VP+ K L +R
Sbjct: 53 LLQSSEHSRLDYTAQEEFDGSSESQLKDY-VGVFDPATKKLQLVPV---KRVTLRSTLR- 107
Query: 171 SDVADKDAGKGEISAEVQANM--KAMLDTRYGTKKSLRQ--SKKMHAL--NKENDPESQK 224
S+ + K + A+ Q M + L + +G+KKS + M+A+ K +DP S +
Sbjct: 108 SETEEMREQKEKTEAQQQTMMAKRNALASEFGSKKSRKALDDMTMNAIRSGKPDDPASAR 167
Query: 225 DLALK---------MKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGE 275
+ A+ K+ +E+ D+ P + A P YP++ I+
Sbjct: 168 NDAVAENILQNMAGATGAMPTKQEMEAAV-DSSKPRPTPNLQAEYPGDVYPIESIVGSEL 226
Query: 276 WDF--VQDIFNHVSAGSEVISDAYPSFVCNRIHKL---REIQDDVEKQTLASIFSYITHL 330
V+D + +AG + + FV RI KL ++IQ + +I
Sbjct: 227 MTMIEVKDWVDAAAAGQNI--NVTSKFVAKRIVKLARNKQIQK-------LKVLRFILFC 277
Query: 331 VKFKD--QHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIHL--LISYVLVLT 386
+ F Q S G + ++ I+ + S A ++ + + ++ L +++
Sbjct: 278 INFSQALQSSKGGKKIPPKGKLEAIMGEDVPQSCIMAIRRKFAREGWNVDNLHTHIAAAA 337
Query: 387 LHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKL---------------LREKNMLYAT 431
L DDF + D+ DL++ +++ +F +LGCK+ N A
Sbjct: 338 LIVDDFEVDVNDLRDDLKIDNKEIQAYFAELGCKVSAPTAADLTKFKLSKAESNNHWVAK 397
Query: 432 LPVPLQFPK 440
L +PL+FP+
Sbjct: 398 LKLPLKFPR 406
>gi|295674623|ref|XP_002797857.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280507|gb|EEH36073.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 500
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 114/505 (22%), Positives = 200/505 (39%), Gaps = 109/505 (21%)
Query: 23 GPKKKNKKRKKDKANTTIDE-QPEPELEPERVKAKVQFIPEQPNKAPPLVGYFPSIYKPD 81
G KK K+ + + ID + P KVQF+ E N P++ P I P
Sbjct: 4 GDHSAEKKMKRKRISEKIDRPNKKAAFAPVEATVKVQFV-ENTNGLLPVIASTPGINVPS 62
Query: 82 ------VDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAMAPQ 135
P ++ PK R++ E N ++ P+ +D+VG GE
Sbjct: 63 SVPLTAYTKPRQKRLPKHNATRSV-EILNSELLLQSSAHPK---LDFVGKE--GENELDM 116
Query: 136 FCHYAVGVLDRSTQTLKIV---PIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMK 192
++ V + D TL++ + R PR + + ++D GE A+ +
Sbjct: 117 LWNHYVAIYDPDAGTLQLAEARKMTVRGCVRRLPR-KNINGGEED---GEGVAKSNWAQR 172
Query: 193 AMLDTRYGTKKSLR--QSKKMHALNKE----NDPESQKDLALKMKSVKINKEA---LEST 243
L +GTK+S + QS +AL +DP + + L I KEA L+ T
Sbjct: 173 TALTEAFGTKQSRKAIQSLAANALLSSAPAGSDPSAVESALLS----SIPKEAVTSLQKT 228
Query: 244 TSDTVLNVPPY---DANATTPQQAYPLDKIILKGEWDF----VQDIFNHVSAGSEVISDA 296
T + V P + +AT P Y ++ ++ G V+D + ++AG V+S +
Sbjct: 229 TQAEIQAVKPLPQPNLSATHPSDVYAIETLVPNGLATLRTMHVKDWQDAIAAGEPVLSSS 288
Query: 297 YPSFVCNRI-HKLREIQDDVEKQTLASIFSYITHLVKF-------KDQHSMDGGASAKQH 348
FV +R+ H +R + +T+ + +I L++ + + G + +
Sbjct: 289 R--FVAHRVEHVVRS-----KNKTMLQLLRFIMILIELSRSLKPSRGVGAATPGPAGTKK 341
Query: 349 RIPKILHQKFLT----------------------SFSDAESKR-------LSDDKIHLLI 379
P+ ++ L+ SF DA ++ LS I LL
Sbjct: 342 LPPREDLRRILSGIPASKGAAAAPTDPQTPLLPDSFLDALRRKFVPQGSFLSKSDITLLH 401
Query: 380 SYVLVLTLH--------ADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLY-- 429
+ + L+LH A + T+P D+ DLR+ ++ +F +LGCK+ + + +
Sbjct: 402 TTICALSLHIPPETGFAASELATDPADLRDDLRLEYQTIQQYFRELGCKVDKPRESEFAK 461
Query: 430 --------------ATLPVPLQFPK 440
A L VP++FPK
Sbjct: 462 WGVKSKAEAGARRIAKLRVPVEFPK 486
>gi|260828464|ref|XP_002609183.1| hypothetical protein BRAFLDRAFT_125950 [Branchiostoma floridae]
gi|229294538|gb|EEN65193.1| hypothetical protein BRAFLDRAFT_125950 [Branchiostoma floridae]
Length = 376
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 89/396 (22%), Positives = 152/396 (38%), Gaps = 92/396 (23%)
Query: 68 PPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSY 127
PP GYF S DV K+NR V+ + YVG ++
Sbjct: 37 PPNFGYFKSTESDDV------------------RKRNRR-----VLVAETKRMQYVGRNF 73
Query: 128 SGEA-MAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAE 186
A C Y VGVLD++T +++ + F + P V + ++ K E+
Sbjct: 74 GPSAPRGNSLCKYMVGVLDKNTGKMRVYDTNS---FTMRPVVHDKN---QEKNKDEVDLT 127
Query: 187 VQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVKINKEALESTTSD 246
Q ++D G KK ++ K+ +EALE+
Sbjct: 128 YQEKNDRLVDAFGGAKKKRAMESRLRD--------------------KVKREALETAMGA 167
Query: 247 TVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFN-HVSAGSEVISDA-----YPSF 300
V +V TP++ L ++ ++D+ V A E IS Y +F
Sbjct: 168 AVEDV------MKTPEK--------LTEVFEALKDVAGVFVKATKEDISKWRTEGRYSTF 213
Query: 301 VCNRIHKLREIQDDVEKQTLASIFSYITHLV-----KFKDQHSMDGGASAKQHRIPKILH 355
V ++ + D+ + T + Y+ +L+ K+ D D IP ++
Sbjct: 214 VLRQVATMP--VDEEARLTRSCHIMYMWYLLALHGLKYSDWRRRD---LPLPDDIPLLVK 268
Query: 356 QKFLTSFS----DAESKRLSDDKIH-LLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKL 410
Q+ L +F+ A S+R ++ L+ Y+LV+ L + F+ N DI DL++++ KL
Sbjct: 269 QQLLGAFTVKADAARSRRAMPPRLKDKLLCYILVMGLIIEKFKLNLNDIQMDLKIAQKKL 328
Query: 411 RDHFEKLGCKLLREKN-------MLYATLPVPLQFP 439
+GC + K A LP+P + P
Sbjct: 329 LTLTRAIGCDVQSRKPDRSMGEIQKIAVLPIPFKLP 364
>gi|431909895|gb|ELK12997.1| DNA-directed RNA polymerase I subunit RPA49 [Pteropus alecto]
Length = 418
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 77/363 (21%), Positives = 169/363 (46%), Gaps = 44/363 (12%)
Query: 116 RDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVAD 175
R S++ +G +G F VG+L++++ +++ ++F ++P V
Sbjct: 67 RCSTLQALGDPLTGGCGREHF----VGILNKTSGQMEVYDA---ELFNMQPLFSDDSVES 119
Query: 176 KDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QSKKMHALNKENDPESQKDLALKMKSV 233
+ + + ++ + M + ++ +GT K R S++M+ + E+ + A +
Sbjct: 120 ESSLESQVKT-FREKMDSCIEA-FGTTKQKRALNSRRMNKVGSESLNHAVAKAAENIIDT 177
Query: 234 K----INKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQ---DIFNHV 286
K + +A+ D L +PP A+A P+ Y + ++ E++ +Q + F +V
Sbjct: 178 KGVTALVSDAIHDDLQDDSLFLPPCHADAAKPEDVYEFEDLLSSAEYEALQSPSEAFRNV 237
Query: 287 SAGSEVI----SDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGG 342
++ E++ +++ SFV + L ++ + Q A ++ L++F+ Q +
Sbjct: 238 TS-EEILKMIEENSHCSFVIEALKSLPSNEESRDHQ--ARCIWFLDTLIRFRAQKVIKR- 293
Query: 343 ASAKQHRIPKILHQKFLTSFS----DAESKR--LSDDKIHLLISYVLVLTLHADDFRTNP 396
SA +P I++ K L F+ + S R +S+ + +YV++L LH +DF+ +
Sbjct: 294 KSALGPGVPHIINTKLLKHFTCLTYNNGSLRNIISNSMKAKITAYVIILALHINDFQIDL 353
Query: 397 TDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYA---------TLPVPLQFPKAIQR--- 444
T + +DL++SE ++ + + + K+ + L A TL +PL + + R
Sbjct: 354 TVLQRDLKLSEKRMIEIAKAMRLKISKRSVSLAAGTEEEHKLGTLCIPLPPAQTLDRQSK 413
Query: 445 RRR 447
RRR
Sbjct: 414 RRR 416
>gi|213408617|ref|XP_002175079.1| DNA-directed RNA polymerase I complex subunit Rpa49
[Schizosaccharomyces japonicus yFS275]
gi|212003126|gb|EEB08786.1| DNA-directed RNA polymerase I complex subunit Rpa49
[Schizosaccharomyces japonicus yFS275]
Length = 419
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 78/363 (21%), Positives = 148/363 (40%), Gaps = 47/363 (12%)
Query: 120 VDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAG 179
V Y T+ S AP +C + V+D+ + ++ P F ++ A
Sbjct: 68 VRYEATNASNTQSAPNYC---LAVVDKDGKVKRLHPATFLGSFERSVLALQNNDALIKKQ 124
Query: 180 KGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVKINKEA 239
+G I+ + +A L +GT+KS Q M E+ D+ K + + ++A
Sbjct: 125 RGSINGAIM-QQRANLGLAFGTRKS--QKAIMDETANRVKAETLGDI--KSQLISNVEKA 179
Query: 240 LESTTSDTVLN--------VPPYDANATTPQQAYPLDKIILKGEWDFV--------QDIF 283
+ S L+ +PP + A T ++AY L II K E + QD
Sbjct: 180 TAALPSQAELDAKQASDRPIPPVNMAAETVEEAYNLYDIIGKEELAAINVKPMLDSQD-- 237
Query: 284 NHVSAGSEVISDAYPSFVCNRIHKLREIQD-DVEKQTLASIFSYITHLVKFKDQHSMDGG 342
A + + + SFV R ++ +++ D ++ L + + + V + +
Sbjct: 238 --EQAWLQKLPTRHSSFVNKRFSRIVSLEEKDFQRAKLVYVVALLQAFVSARRSVNDRET 295
Query: 343 ASAKQHRIPKILHQKFLTSFSD---AESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDI 399
K P+I+ L F++ + ++S + ++ Y+ +L L D++ T+ T +
Sbjct: 296 LRKKLGFPPEIVIDGLLKRFTERNGTGALQVSTKGVDKIMCYMFLLCLMLDNYSTDVTTL 355
Query: 400 AKDLRMSEFKLRDHFEKLGCKLLREKNMLY---------------ATLPVPLQFPKAIQR 444
A DL + K + F+ LGC+++ + A L VPL+FP+ +
Sbjct: 356 ANDLSIKNMKANELFKTLGCRIMAYTETQWKAMGITKTEARSRKRAVLKVPLEFPRPRRG 415
Query: 445 RRR 447
R R
Sbjct: 416 RAR 418
>gi|90076400|dbj|BAE87880.1| unnamed protein product [Macaca fascicularis]
Length = 339
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 90/177 (50%), Gaps = 19/177 (10%)
Query: 245 SDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQ---DIFNHVSAGSEVI----SDAY 297
SD L +PP +AT P+ Y + ++ E++ +Q + F +V++ E++ +++
Sbjct: 114 SDDSLYLPPCYDDATKPEDVYKFEDLLSPAEYEALQSPSEAFRNVTS-EEILKMIEENSH 172
Query: 298 PSFVCNRIHKLREIQDDVE-KQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQ 356
+FV I L+ + DVE + A ++ L+KF+ Q + SA +P I++
Sbjct: 173 CTFV---IEALKSLPSDVESRDRQARCIWFLDTLIKFRAQRVVKR-KSALGPGVPHIINT 228
Query: 357 KFLTSFS-----DAESKRLSDDKIHLLIS-YVLVLTLHADDFRTNPTDIAKDLRMSE 407
K L F+ + + L D + I+ YV++L LH DF+ + T + DL++SE
Sbjct: 229 KLLKHFTCLTYNNGRLRNLISDSMKAKITAYVIILALHIHDFQIDLTMLQGDLKLSE 285
>gi|402896937|ref|XP_003911535.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 isoform 2
[Papio anubis]
Length = 339
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 90/177 (50%), Gaps = 19/177 (10%)
Query: 245 SDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQ---DIFNHVSAGSEVI----SDAY 297
SD L +PP +AT P+ Y + ++ E++ +Q + F +V++ E++ +++
Sbjct: 114 SDDSLYLPPCYDDATKPEDVYKFEDLLSPAEYEALQSPSEAFRNVTS-EEILKMIEENSH 172
Query: 298 PSFVCNRIHKLREIQDDVE-KQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQ 356
+FV I L+ + DVE + A ++ L+KF+ Q + SA +P I++
Sbjct: 173 CTFV---IEALKSLPSDVESRDRQARCIWFLDTLIKFRAQRVVKR-KSALGPGVPHIINT 228
Query: 357 KFLTSFS-----DAESKRLSDDKIHLLIS-YVLVLTLHADDFRTNPTDIAKDLRMSE 407
K L F+ + + L D + I+ YV++L LH DF+ + T + DL++SE
Sbjct: 229 KLLKHFTCLTYNNGRLRNLISDSMKAKITAYVIILALHIHDFQIDLTMLQGDLKLSE 285
>gi|358337559|dbj|GAA55910.1| hypothetical protein CLF_109350, partial [Clonorchis sinensis]
Length = 300
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 107/242 (44%), Gaps = 53/242 (21%)
Query: 240 LESTTSD--TVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDA- 296
LES T+D T L +PP++ + + PQ YP +K+I I ++A SE ++ A
Sbjct: 56 LESGTADERTRL-LPPFNPDVSYPQDVYPFEKLI-------PSRILEALAAESETLATAP 107
Query: 297 ------------YPSFVCNRIHKLREIQDDVE-------KQTLASIFSYITHLVKFKDQH 337
YP V +R+ +L + + + + +A +Y++H++
Sbjct: 108 VSSYDTWSRQGTYPKCVLDRLLQLSSLSNSNKPEKASENRMKIAQCLAYLSHMLAL---F 164
Query: 338 SMDGGASAKQHRIP-------KILHQKFLTSFSDAESKRLSDDKIH-----LLISYVLVL 385
+ G ++ +P K L +F + ES RL + LI ++L L
Sbjct: 165 RLPGYDIQRKQPLPDTPPTVTKHLLDEFTALVNRGESGRLKIRTMSPLLRDRLIYHMLAL 224
Query: 386 TLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNML--------YATLPVPLQ 437
LH D+F+T D+ D +MS L+ +F +GC + +E L A+L P++
Sbjct: 225 ILHCDNFKTVIDDLTIDFQMSSDVLKRYFVYMGCHVNKEDMKLGTDVTTRQRASLKTPVK 284
Query: 438 FP 439
FP
Sbjct: 285 FP 286
>gi|254571535|ref|XP_002492877.1| RNA polymerase I subunit A49 [Komagataella pastoris GS115]
gi|238032675|emb|CAY70698.1| RNA polymerase I subunit A49 [Komagataella pastoris GS115]
gi|328353110|emb|CCA39508.1| DNA-directed RNA polymerase I subunit A49 [Komagataella pastoris
CBS 7435]
Length = 413
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 83/361 (22%), Positives = 152/361 (42%), Gaps = 52/361 (14%)
Query: 127 YSGEAMAPQFCHYAVGVLDRSTQTLKI--VPIAANKIFRLEPRVRGSDVADKDAGKGEIS 184
Y G+ +Y + + D + ++++ P+ +++ R + S A K AG I
Sbjct: 64 YDGQTDPEDNSNYCIAIYDPDSASVELYKAPLIVSQVSSKLKR-KSSGPAVKQAG---IH 119
Query: 185 AEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVKINKEALES-- 242
A +Q N L +GTKK+ +++ + +NK + + + + S+K E L S
Sbjct: 120 ARLQRNA---LGQAFGTKKA-KKAITSNEINKVDASKLEGSALDIVDSIKSTTEQLPSRE 175
Query: 243 ---TTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDF--VQDIFNHVSAGSEVISDAY 297
T D VPPY+ +AT + YPL+ II EW + V I + + +
Sbjct: 176 ELETKLDEFRPVPPYNLDATHVEDIYPLEGIISSLEWKYLRVDAILAETDWKKRL--ELF 233
Query: 298 P----SFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQ--HSMDGGASAKQHRIP 351
P ++ + + KL + + +K+T+ ++ L ++++ H A Q P
Sbjct: 234 PFQDSHYIRSHLEKL-SLDKNTQKKTIQLLYYLSVLLGTYRNRRLHQKQALMEALQDP-P 291
Query: 352 KILHQKFLTSFSDAESKRLS--DDKIHL--------LISYVLVLTLHADDFRTNPTDIAK 401
+ L L F+ ++ D+ L L+ Y+L L LH D F +++
Sbjct: 292 ESLINGVLKRFTVVKAGLFGRRKDQSFLVDPQNEDKLLGYILALILHIDSFMIEIPPLSQ 351
Query: 402 DLRMSEFKLRDHFEKLGCKL----LREKNML-----------YATLPVPLQFPKAIQRRR 446
+L + KL + LGC + E +L A L VP + P+ +R+R
Sbjct: 352 ELSLKSSKLSNLLRVLGCTIKPVTAAEAEVLGVKRSEMKTHKVAVLRVPFKLPEITRRKR 411
Query: 447 R 447
R
Sbjct: 412 R 412
>gi|21961555|gb|AAH34783.1| Polr1e protein [Mus musculus]
Length = 482
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 170/403 (42%), Gaps = 88/403 (21%)
Query: 112 VVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRV-- 168
+V+ + YVG ++ A+ C + VG+L++++ +++ ++F ++P
Sbjct: 74 IVAAETDRLSYVGNNFGTGALKCNALCRHFVGILNKTSGQMEVYDA---ELFNMQPLFAG 130
Query: 169 RGSDVAD------------------KDAGKGEISAEVQANMKAML--------------- 195
G++V +AG +S Q + A+L
Sbjct: 131 MGTEVIKLGGQHLYLLAFCQPSKNLAEAGDLLLSRHRQGHCIAVLLDDDAIEREPPLENQ 190
Query: 196 --------DTRYGTKKSLRQSKKMHA--LNKENDPESQKDLALKMKSVKINKEALESTTS 245
D+ S +Q + +++ +NK +A +S+ I+ + + + S
Sbjct: 191 NKTFRDKLDSCIEAFGSTKQKRSLNSRRMNKVGSESLNLSVAKAAESI-IDTKGVNALVS 249
Query: 246 DTV--------LNVPPYDANATTPQQAYPLDKIILKGEWDFVQ---DIFNHVSAGSEVI- 293
D + L +PP A+A P+ Y + I+ E+D ++ + F V+ SE I
Sbjct: 250 DAMQDDLQYDALYLPPCYADAAKPEDVYRFEDILSPAEYDALESPSEAFRKVT--SEDIL 307
Query: 294 ----SDAYPSFVCNRIHKLREIQ-DDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQH 348
+++ S+V I L+ + D+V + A ++ L++F+ Q + G A
Sbjct: 308 KMIEENSHCSYV---IEMLKSLPIDEVHRNRQARSIWFLDALIRFRAQKVIKG-KRALGP 363
Query: 349 RIPKILHQKFLTSFS-----DAESKRLSDDKIHLLI-SYVLVLTLHADDFRTNPTDIAKD 402
IP I++ K L F+ + + L + I SY ++L LH ++F+ + T + KD
Sbjct: 364 GIPHIINTKLLKQFTCLTYNNGRLQNLISSSMRAKITSYAIILALHINNFQVDLTALQKD 423
Query: 403 LRMSE---------FKLRDHFEKLGCKLLREKNMLYATLPVPL 436
L++SE +L+ +K+ RE++ TL VPL
Sbjct: 424 LKLSEKRIIEIAKAMRLKISKQKVSLADGREESHRLGTLSVPL 466
>gi|171686784|ref|XP_001908333.1| hypothetical protein [Podospora anserina S mat+]
gi|170943353|emb|CAP69006.1| unnamed protein product [Podospora anserina S mat+]
Length = 430
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 93/409 (22%), Positives = 174/409 (42%), Gaps = 44/409 (10%)
Query: 64 PNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNR---TGRMELVVSPRDSSV 120
P +PP+V P D D VY + ++ N+ +G + S
Sbjct: 41 PQVSPPVVAITPGFLLRDKHAFD--------VYEKVPQQANKRRKSGGIPQAPEMALHSS 92
Query: 121 DYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGK 180
+V Y+ HY + ++D T+ ++I I+A K+ + +VR K+ G+
Sbjct: 93 THVSIDYTARETEQMLNHY-LAIVDPKTKEIEI--ISAKKMM-VRHKVRAQQEERKEPGE 148
Query: 181 GEISAEVQANMKAMLDTRYGTKKSLRQSKKM--HALNKENDPESQKDLALKMKSVK---- 234
E +A+ + L +GT+K+ + K + +A+ D Q + + +++VK
Sbjct: 149 -ESAAQTNYERRTALGEEFGTRKAKKALKSVADNAIMASTDNLGQAENTM-LQNVKEVFA 206
Query: 235 --INKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDI-FNHVSAGSE 291
KE L++ D V VP + NA Q Y +II + V + + +E
Sbjct: 207 TSATKEELQAAV-DQVRPVPKGNYNAEHIQDVYIPREIIGSEILNAVPVMDWQEAVRNNE 265
Query: 292 VISDAYPS-FVCNRIHKLREIQDDVEK-QTLASIFSYITHLVKFKDQHSMDGGASAKQHR 349
++ PS FV +RI ++ ++D E+ Q L + I V AK+ +
Sbjct: 266 AVN--VPSRFVAHRIARVAANKEDKERLQVLRYLLWVIILWVTTGKGRERGTKTIAKRDK 323
Query: 350 I-------PKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKD 402
+ P+++ + FSD R + + LL+++ V D+F N D+ +D
Sbjct: 324 LRELLSPAPEVVIENIRRKFSDNGVMR--KEHMELLMTHCCVFASIIDNFEVNMNDLRED 381
Query: 403 LRMSEFKLRDHFEKLGCKLLREKNMLY----ATLPVPLQFPKAIQRRRR 447
L++ + +L +F ++G ++ + K A L +PL FP+ RR
Sbjct: 382 LKLEQKQLAQYFMEVGARVKQSKAGGVMKHIAKLQLPLVFPRIRSGARR 430
>gi|385301655|gb|EIF45829.1| rna polymerase i alpha subunit [Dekkera bruxellensis AWRI1499]
Length = 425
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 75/374 (20%), Positives = 159/374 (42%), Gaps = 44/374 (11%)
Query: 110 ELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVR 169
++V+ + ++ Y G+ SG + Y +G+ D +++L +V K + ++
Sbjct: 54 DVVLHGENENLIYDGSLKSGXHSKNGYPKYCIGIYDPESRSLXLV-----KXKLIPTKIE 108
Query: 170 GSDVADKDAGKGEISAEVQANMKAMLDTRYGTK--KSLRQSKKMHALNKENDPESQKDLA 227
+ + +++ + ++ L +GT+ K+ S K + ++ E++ D+A
Sbjct: 109 SXKLLNVKDBYEDMTDVSKLEQRSRLGEEFGTRRAKAALSSYKKNRVDASKLQENELDIA 168
Query: 228 LKMKSVKIN---KEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQ-DIF 283
++ N K L T +P Y+ A + + YP++ +I + E +Q D+F
Sbjct: 169 SDIQKSTSNIPDKVKLTKTVEXENRLIPKYNEKAASVDEVYPVEGVISEREQGMIQVDVF 228
Query: 284 NHV---SAGSEVISDAYPSFVCNRIHKLREIQ----DDVEKQTLASIFSYITHLVKF--- 333
+ ++ + + P + ++ L +++ D + + I YI+ L+
Sbjct: 229 LQQIKENTAAKTLLELMPYYTETSVYLLDKLEKQDADSSDSKLRLKIMYYISTLMGVYFN 288
Query: 334 KDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKR-------LSDDKIHLLISYVLVLT 386
+ MD Q++ + L F+D R +++DKI ++Y+L L
Sbjct: 289 RRSRFMDKLLENFQNQPSTFIVDSCLKRFTDYNGIRKHFYMDPMNEDKI---LTYILTLM 345
Query: 387 LHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLRE-----------KNMLY--ATLP 433
L D++ T +A++L ++ +L LGC KN +Y A L
Sbjct: 346 LRLDNYTLPITPLAQELSINPSRLVSLLRSLGCHXKNATIAQKEAWNVPKNAVYKVAVLT 405
Query: 434 VPLQFPKAIQRRRR 447
VPL+ P I+R R+
Sbjct: 406 VPLKLPPXIRRGRK 419
>gi|440475705|gb|ELQ44368.1| hypothetical protein OOU_Y34scaffold00088g8 [Magnaporthe oryzae
Y34]
Length = 458
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 89/371 (23%), Positives = 152/371 (40%), Gaps = 74/371 (19%)
Query: 119 SVDYVG---TSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVAD 175
S+DY S +GE F + +GV D T L++V A K+ VRGS +
Sbjct: 120 SLDYTAREEQSQNGEG----FLRHYIGVFDPKTGELEVV--EARKV-----TVRGSSM-R 167
Query: 176 KDAGKGEISAEVQANMKAMLDTRYGTKKSLRQ--SKKMHALNKENDPESQKDLALKMKSV 233
+G + +M+ L +GTKK+ + SK +A+ N+ S+ A
Sbjct: 168 PHSGMSLPIVQTNMDMRTDLGQAFGTKKAKKALVSKVENAITAINNASSRDSGA------ 221
Query: 234 KINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDF--VQDIFN-HVSAGS 290
+ AL ++ N+P D A P + KG +D +QD+++ GS
Sbjct: 222 --GEAALMASIKTAAANMPTRDELQAAVDGAKP----VPKGNYDAAEIQDVYDPDQIIGS 275
Query: 291 EVISDAYP------------------SFVCNRIHKLREIQDDVEKQTLASIFSYITHLVK 332
+V+ +A P +V NR+ ++ E + +++ I Y+ L+
Sbjct: 276 DVL-NAIPVRDWQTANKNDENVQLTSRYVANRLPRVGEHAESLKR---LRILRYLYFLMT 331
Query: 333 F-KDQHSMDGGASAKQHR---------IPKILHQKFLTSFSDAESKRLSDDKIH--LLIS 380
F K G R P ++ F+D R KIH L+++
Sbjct: 332 FIKIAKPGKNGVRKLPPRDKLREALSPAPDVVLDSLRHKFADGTQMR----KIHADLIMT 387
Query: 381 YVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCK----LLREKNMLYATLPVPL 436
VL D F + D+ +DL++ + +L +F ++G + + +K A L +PL
Sbjct: 388 TCCVLASIIDSFEVDTFDLREDLQLEQKQLNSYFAEIGARTKPVVNGDKKTTIAKLALPL 447
Query: 437 QFPKAIQRRRR 447
QFPK RR+
Sbjct: 448 QFPKVSMGRRK 458
>gi|355567619|gb|EHH23960.1| DNA-directed RNA polymerase I subunit RPA49 [Macaca mulatta]
gi|355753190|gb|EHH57236.1| DNA-directed RNA polymerase I subunit RPA49 [Macaca fascicularis]
Length = 417
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 93/184 (50%), Gaps = 19/184 (10%)
Query: 238 EALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQ---DIFNHVSAGSEVI- 293
+A+ + D L +PP +AT P+ Y + ++ E++ +Q + F +V++ E++
Sbjct: 185 DAIHNDLQDDSLYLPPCYDDATKPEDVYKFEDLLSPAEYEALQSPSEAFRNVTS-EEILK 243
Query: 294 ---SDAYPSFVCNRIHKLREIQDDVE-KQTLASIFSYITHLVKFKDQHSMDGGASAKQHR 349
+++ +FV I L+ + DVE + A ++ L+KF+ Q + SA
Sbjct: 244 MIEENSHCTFV---IEALKSLPSDVESRDRQARCIWFLDTLIKFRAQRVVKR-KSALGPG 299
Query: 350 IPKILHQKFLTSFS-----DAESKRLSDDKIHLLIS-YVLVLTLHADDFRTNPTDIAKDL 403
+P I++ K L F+ + + L D + I+ YV++L LH DF+ + T + DL
Sbjct: 300 VPHIINTKLLKHFTCLTYNNGRLRNLISDSMKAKITAYVIILALHIHDFQIDLTMLQGDL 359
Query: 404 RMSE 407
++SE
Sbjct: 360 KLSE 363
>gi|328865630|gb|EGG14016.1| putative RNA polymerase I subunit [Dictyostelium fasciculatum]
Length = 372
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 121/257 (47%), Gaps = 24/257 (9%)
Query: 209 KKMHALNKEN----DPESQKDLALKMKSVKINKEA-LESTTSDTVLNVPPYDANATTPQQ 263
K +H EN D K +A +K+ +++ A +E T+D +P Y+ AT +
Sbjct: 119 KTIHKTESENLGSLDSSKTKQMADNVKNELVSQGASMEDQTTD----LPQYNLEATEAKD 174
Query: 264 AYPLDKII---LKGEWDFVQDIFNHVSAGSEVISDAYPSFVCNRIHKLREIQDDVEKQTL 320
Y ++ ++ + E D V D S I + PS+V +I K+ I+D+ +K+
Sbjct: 175 IYAIEILLPFDVYSELD-VSDSMAFCKDKS-TIPETLPSYVKQKIEKISGIEDNEDKEHA 232
Query: 321 ASIFSYITHL-VKFKDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESK---RLSDDKIH 376
I I ++ + K + D ++ +P+ L +F SK +S + +
Sbjct: 233 CKILLIIYYMSLMAKARKGKDIFTVLSENGVPRETKHYLLNNFCTKVSKTKNTMSSFQTN 292
Query: 377 LLISYVLVLTLHADDFRT---NPTDIAKDLRMSEFKLRDHFEKLGCKLLRE---KNMLYA 430
L ++V +L+LH D F + + ++AK L + L H++++GC +R+ K+ +
Sbjct: 293 KLYNFVAILSLHLDGFYSRSESINELAKALGIEPHILTKHYQRVGCTTIRDPQRKSFIDF 352
Query: 431 TLPVPLQFPKAIQRRRR 447
L PL+ + +++ ++
Sbjct: 353 RLKAPLKITEEVRQFKK 369
>gi|302903825|ref|XP_003048941.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256729875|gb|EEU43228.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 443
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 100/417 (23%), Positives = 170/417 (40%), Gaps = 60/417 (14%)
Query: 63 QPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDY 122
+P PP++ P P + P PK + K+ + L+ S S+DY
Sbjct: 39 RPKFCPPVIATIPGFELPK-NTPFHSYAPKNGAKSKTKQPKSAGEKEFLLHSTAHRSLDY 97
Query: 123 VGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKD--AGK 180
+ P H+ +G+ D T L++V A K+ VRG+ A + A
Sbjct: 98 TAKAEGPRGTKPALNHF-LGIYDPKTGKLQVV--EAKKM-----TVRGAVRAKQASAAAT 149
Query: 181 GEISA-EVQANMKAMLDTRYGTKKSLR--QSKKMHAL---NKENDPESQKDLALK----- 229
GE A + +K L +GTKK+ + Q ++A+ K D ++ D A +
Sbjct: 150 GERDAKQTMMELKTDLGQTFGTKKAKKAIQENVLNAIAPQKKAGDAPTKIDAAARAMLSS 209
Query: 230 ---MKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHV 286
+ S ++E L++ D VP + +AT Q Y KII DI N V
Sbjct: 210 VGEVTSTMASREELQAVV-DEAKPVPVANVDATEIQDVYDPKKII-------GADILNLV 261
Query: 287 SA--GSEVI----SDAYPS-FVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSM 339
E + S PS FV R+++ + + E T + Y ++ F HS
Sbjct: 262 PVREWQEKVQHKESIQVPSRFVAARVNR---VAGNEEAVTRLRVLRYFFFVLMFY-LHSK 317
Query: 340 DGGASAKQHRIPKILHQKFLTSFSDA--ES--KRLSDDK------IHLLISYVLVLTLHA 389
G A + P+ ++ L +A ES ++ SD I LL+++ V
Sbjct: 318 PGKARGTRSIPPREKLREILAPAPEAVIESIRRKFSDRGEMRKFHIDLLMTHCCVFACIV 377
Query: 390 DDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKN------MLYATLPVPLQFPK 440
D+F + ++ DL++ + + +F ++G ++ N + A L +PL FPK
Sbjct: 378 DNFEVDTQNLRDDLKIDQKTMNGYFHEIGGRVKPVSNKDTKTTIHVARLTLPLNFPK 434
>gi|194381796|dbj|BAG64267.1| unnamed protein product [Homo sapiens]
Length = 349
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 111/233 (47%), Gaps = 33/233 (14%)
Query: 199 YGTKKSLR--QSKKMHALNKENDPESQKDLALKMKSVKINKEALESTTSDTV-------- 248
+GT K R +++M+ + E S A K I+ + + + SD +
Sbjct: 72 FGTTKQKRALNTRRMNRVGNE----SLNRAAAKAAETIIDTKGVTALVSDAIHNDLQDDS 127
Query: 249 LNVPPYDANATTPQQAYPLDKIILKGEWDFVQ---DIFNHVSAGSEVI----SDAYPSFV 301
L +PP +A P+ Y + ++ E++ +Q + F +V++ E++ +++ +FV
Sbjct: 128 LYLPPCYDDAAKPEDVYKFEDLLSPAEYEALQSPSEAFRNVTS-EEILKMIEENSHCTFV 186
Query: 302 CNRIHKLREIQDDVE-KQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLT 360
I L+ + DVE + A ++ L+KF+ H + SA +P I++ K L
Sbjct: 187 ---IEALKSLPSDVESRDRQARCIWFLDTLIKFR-AHRVVKRKSALGPGVPHIINTKLLK 242
Query: 361 SFS-----DAESKRLSDDKIHLLIS-YVLVLTLHADDFRTNPTDIAKDLRMSE 407
F+ + + L D + I+ YV++L LH DF+ + T + +DL++SE
Sbjct: 243 HFTCLTYNNGRLRNLISDSMKAKITAYVIILALHIHDFQIDLTVLQRDLKLSE 295
>gi|367050792|ref|XP_003655775.1| hypothetical protein THITE_2119848 [Thielavia terrestris NRRL 8126]
gi|347003039|gb|AEO69439.1| hypothetical protein THITE_2119848 [Thielavia terrestris NRRL 8126]
Length = 439
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 93/427 (21%), Positives = 182/427 (42%), Gaps = 73/427 (17%)
Query: 63 QPNKAPPLVGYFPSIYKPD---VDHPDEEMRPKVRVYRNMNEKKNRTGRM----ELVV-S 114
+P +PP+V P I PD D +++ +P K+ ++G + E+ + S
Sbjct: 42 KPQVSPPVVALTPGISLPDSFPFDVYEKDEQP--------TAKRRKSGGLPTPSEMALHS 93
Query: 115 PRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVA 174
++DY +++ H+ + ++D + ++++ A + R R + +
Sbjct: 94 ASHRTIDYTAREERWKSVDTLLNHF-LAIIDPQSGEVEVIQ-AKKMVVRGTVRSKQAPAE 151
Query: 175 DKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVK 234
+ G G+ + + MK L +GTKK+ K + A+ EN LA K + K
Sbjct: 152 AMEVGAGKPT---HSEMKMELGEAFGTKKA---KKALQAV-AEN-----AMLAAKSRG-K 198
Query: 235 INKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDF--VQDIFNHVSA-GSE 291
+ ++ + DT+ + + A Q A + + +G +D +QD++ G+E
Sbjct: 199 LGED--DRALVDTIEDASHHMATREELQAALDSARPVPRGNFDAKEIQDVYVPAQIIGAE 256
Query: 292 VISDAYP------------------SFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKF 333
V+ +A P FV NRI ++ +DV++ L ++
Sbjct: 257 VL-NAIPVMDWQEKVQKHEDVLVPSRFVANRIVRVAG-SEDVQRLKLLRYLLWVLIFWST 314
Query: 334 KDQHSMDGGASAKQHR--------IPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVL 385
Q G S + P+++ + FSD+ R + + LL+++ V
Sbjct: 315 TRQGRERGTRSISRREKLREDLAPAPEVVIENIRRKFSDSGVMRKT--HVDLLMTHCCVF 372
Query: 386 TLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNM----LYATLPVPLQFPK- 440
D+F N D+ +DL++ + +L +F ++G + + K +A L +PLQFPK
Sbjct: 373 ASIIDNFDVNTYDLREDLKLEQKQLNQYFMEIGARTRQSKAGDKVNHFAKLALPLQFPKM 432
Query: 441 --AIQRR 445
AI+RR
Sbjct: 433 RQAIRRR 439
>gi|452841287|gb|EME43224.1| hypothetical protein DOTSEDRAFT_89151 [Dothistroma septosporum
NZE10]
Length = 441
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 102/437 (23%), Positives = 180/437 (41%), Gaps = 72/437 (16%)
Query: 56 KVQFIPEQPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVV-S 114
KV+ I E+ P L+ P + P V + K ++ N + + +L++ S
Sbjct: 32 KVKVIHEEAETYPVLLSA-PGVNAPGVAF---KAYSKAHSSKHTNASRVKPSTHDLLLQS 87
Query: 115 PRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVA 174
+ +DY TS S + + Q HY V V D + L+I P A + R R + A
Sbjct: 88 SQHPRLDYTATSNSLD-VTQQLSHY-VAVYDPILKELRITP-AHHLDLRSYLRSEAQEEA 144
Query: 175 DKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQ--SKKMHALNKENDPESQKDLALKMKS 232
++ A + L +GTKK+ + SK ++A+ + DP+ + + +
Sbjct: 145 EERL--------TIAKQREALGREFGTKKAKKAIDSKTVNAITQ--DPKGKGKVTDAQNA 194
Query: 233 V---KINKEALESTTSDTVLN--------VPPYDANATTPQQAYPLDKIILKGEWDFV-- 279
+ N A + +D +P + A + Y D +I + V
Sbjct: 195 ILEFVGNSTAGAAAKNDEEEAEALLAAKPIPRPNLAADNVEDVYTFDTLIPPSDARLVPT 254
Query: 280 QDIFNHVSAGSEV-ISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHS 338
+D + AG E+ S +P+F K DD K T Y+ L++F D S
Sbjct: 255 RDWQDKARAGEEIKFSHRFPAFRVAAAGK----SDDRLKLT---ALRYLALLLEFHDALS 307
Query: 339 MDGGASAKQHRIPK--ILHQKFLT---SFSDAESKRLSDDKIHLL--------ISYVLVL 385
G A K +PK IL ++F DA +R +D+ L +++ L
Sbjct: 308 NAGRAGKK---VPKKDILAKRFSAWPMQLVDAVRRRFADESGQALGKWQQDNLYTHICAL 364
Query: 386 TLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLR----EKNML-----------YA 430
+L+ D + T+ +++ DL++ + + +F +LGCK+ + E N +A
Sbjct: 365 SLYIDGWLTDTSNLKDDLKLEQRVISQYFHELGCKVSQPTETEANRYNLKKVERAVTRFA 424
Query: 431 TLPVPLQFPKAIQRRRR 447
L +PL FPK R++
Sbjct: 425 RLKLPLDFPKPRAGRKK 441
>gi|320593640|gb|EFX06049.1| a49-like, RNA polymerase 1 associated factor [Grosmannia clavigera
kw1407]
Length = 451
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 83/373 (22%), Positives = 151/373 (40%), Gaps = 68/373 (18%)
Query: 111 LVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRG 170
L+ S +V+Y G HY +GVLD +T L+++ A + R R R
Sbjct: 94 LLHSSSHHTVNYTGKEDKAPGSGAALRHY-IGVLDPATGQLQVME-AKKMVIRGSVRARE 151
Query: 171 SDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQK------ 224
A +DA +G +++ L +GTKK+ K + AL EN ++K
Sbjct: 152 ---ASEDAMRGVSVKSTMMDLRNDLGQTFGTKKA---KKAIQALT-ENAISTRKRREDGT 204
Query: 225 --DLAL------KMKSVKINKEALES-----TTSDTVLNVPPYDANATTPQQAYPLDKII 271
+A+ +++S++ A+ + T D +P + A Q Y ++I
Sbjct: 205 FEAVAMGAADRAQLQSMQAATAAMSTRDELRETVDRAKPIPRGNFEAQEIQDVYVASEMI 264
Query: 272 LKGEWDFV--QDIFNHVSAGSEVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITH 329
V +D V AG ++ Y FV R++++ D +E+ L Y+
Sbjct: 265 GADTLATVPVRDWQEAVRAGEDI--QLYSRFVAQRVNQVAARADGLEQLRL---LRYLYW 319
Query: 330 LVKF-------------------KDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRL 370
++ + K + MDG P+ + + FSD + R
Sbjct: 320 VILYWQAARPGRERGTKRQPPREKLREMMDGA--------PEAIVEHIRQRFSDGGTIR- 370
Query: 371 SDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGC--KLLREKNML 428
+ LLI++ D F N D+ +DL++ + ++ +F ++G K+++ +
Sbjct: 371 -KFQADLLITHCCAFACIIDGFEVNTYDLREDLKLEQQQIAQYFSEIGARNKIVKTDEAV 429
Query: 429 --YATLPVPLQFP 439
A L +PLQFP
Sbjct: 430 SHVAKLALPLQFP 442
>gi|85083476|ref|XP_957125.1| hypothetical protein NCU06485 [Neurospora crassa OR74A]
gi|28918211|gb|EAA27889.1| predicted protein [Neurospora crassa OR74A]
Length = 436
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 83/363 (22%), Positives = 154/363 (42%), Gaps = 37/363 (10%)
Query: 102 KKNRTGRMELVV-SPRDSSVDYVGTS-YSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAAN 159
KKN EL++ S ++DY +G++ P HY +G+ + T ++IV A
Sbjct: 79 KKNGAPAQELLLHSANHRTMDYTAREDRTGDSSDPYLKHY-IGIFNPKTAEVEIVE--AR 135
Query: 160 KIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKEND 219
K+ L VR D +A + + + M+ L +GTKK+ + + + +
Sbjct: 136 KMV-LRGTVRSQKAVD-EAMEEKTQKQQMMAMRNELGEAFGTKKAKKAIRDVTENAITSQ 193
Query: 220 PESQKDLALKMKSVKI------NKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILK 273
Q +L + M ++K KE L++ D VP + NA Y +II
Sbjct: 194 KVGQSELVM-MDAIKTATKDMSTKEDLQAAV-DNARPVPRGNFNADEIADVYVPSQIIGS 251
Query: 274 GEWDFVQDIFNHVSAGSEVISDAYPS-FVCNRIHKLREIQDDVEKQTLASIFSYITHLVK 332
+ + + + + + PS FV R+ + D V + + Y+ ++
Sbjct: 252 EVLNAI-PVMDWQESVKNLEDIQVPSRFVAKRVSNVASSDDAVHR---LRVLRYLLFVII 307
Query: 333 FKDQHSM--DGGASAKQHR---------IPKILHQKFLTSFSDAESKRLSDDKIHLLISY 381
F + S + G + R P+I+ + FSD R + + LL+++
Sbjct: 308 FWNATSQGRERGTRSIGKRDKLREVMAPAPEIVIENIRRKFSDGGVMRKT--HVDLLMTH 365
Query: 382 VLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKL----LREKNMLYATLPVPLQ 437
D FR N D+ +DL++ + +L +F ++G ++ + +K +A L +PLQ
Sbjct: 366 CCAFAAIIDGFRVNTIDLREDLKLEQKQLNQYFIEIGARVKQQKVADKMENFAVLQLPLQ 425
Query: 438 FPK 440
FPK
Sbjct: 426 FPK 428
>gi|296809253|ref|XP_002844965.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
gi|238844448|gb|EEQ34110.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
Length = 480
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 95/489 (19%), Positives = 196/489 (40%), Gaps = 88/489 (17%)
Query: 26 KKNKKRKKDKANTTIDEQP--EPELEPERVKAKVQFIPEQPNKAPPLVGYFPSIYKPDVD 83
+K +KR D+ E+P +P ++ AKV+F+ + P ++ P + P+
Sbjct: 7 EKKRKRASDRP-----ERPSKKPAIDSNAAPAKVRFMNNEAGHVP-IIASSPGLTVPETL 60
Query: 84 HPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGV 143
+ MR + + +++ E N + L+ + +++ G GE ++ V V
Sbjct: 61 PLNTYMRRRQQRIKHI-ENTNLSSTELLLHTSGHPKLNFTG--REGENELDNLLNHYVAV 117
Query: 144 LDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTK- 202
D T++++ A + R PR + + D + E SA + +A L +GTK
Sbjct: 118 YDPKENTVQLLE-ARKMMVRGCPR---AAIVDVEEDTDEESAPTALSQRAALAAAFGTKL 173
Query: 203 -----KSLRQSKKMHALNKENDPESQKDLALKMKSVKINKEALESTTSDTVLN---VPPY 254
++ ++ + + ++ L M + A E + + + +P
Sbjct: 174 ARKAVAAITENALTSNASASSAKAAESALLSSMPQDAMTIAAAEKSAQEEIQASKPLPQP 233
Query: 255 DANATTPQQAYPLDKIILKGEWDF----VQDIFNHVSAGSEVISDAYPSFVCNRIHKLRE 310
+ +AT P Y ++ ++ G VQD V+A + + + FV NR+ +
Sbjct: 234 NLSATQPADVYSIESLVPNGLPTLRKIPVQDWQAAVAASEGITTTSR--FVANRVEAAVQ 291
Query: 311 IQDDVEKQTLASIFSYITHLVKFKD--QHSMDGGASAKQHRIP-KILHQKFLTSFSDAES 367
D +T+ + +I L++F + S GG ++P + ++ L+ D+E+
Sbjct: 292 SGD----KTIVQLLRFILILIEFSRSLKRSSGGGRGPDSKKLPPREDLRRLLSKAVDSET 347
Query: 368 KR----------------------LSDDKIHLLISYVLVLTLH------------ADDFR 393
LS + I LL + + ++LH A +
Sbjct: 348 STTPTITDPFLDSIRRKFVPQGSFLSRNDITLLHTTICAMSLHIPPASGKTGGGSASELA 407
Query: 394 TNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYAT-----------------LPVPL 436
T+P+D+ DLR+ + +F +LGC++ + + +A L +P+
Sbjct: 408 TDPSDLRDDLRLENDTILKYFRELGCRVDKPRETEFAKWSIKGGKAEAASKRIARLKIPV 467
Query: 437 QFPKAIQRR 445
+FPK + R
Sbjct: 468 EFPKVSRGR 476
>gi|281206694|gb|EFA80880.1| putative RNA polymerase I subunit [Polysphondylium pallidum PN500]
Length = 1017
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 58/102 (56%), Gaps = 6/102 (5%)
Query: 346 KQHRIPKILHQKFLTSFSDAESK---RLSDDKIHLLISYVLVLTLHADDFRTNPTD---I 399
KQ+++P + + L FS +SK ++ D + L++YV++++LH ++F I
Sbjct: 906 KQYKVPHDVIKHMLYLFSQQQSKFKHKIGDVEYARLMNYVVIISLHLENFSVKSEMVKLI 965
Query: 400 AKDLRMSEFKLRDHFEKLGCKLLREKNMLYATLPVPLQFPKA 441
A+ ++ ++KL H+ ++GC ++R+K L PL+ P+
Sbjct: 966 AEAFKIPDYKLEKHYSRVGCNVIRDKQYRDFKLKAPLKLPEV 1007
>gi|256076088|ref|XP_002574346.1| hypothetical protein [Schistosoma mansoni]
gi|360042790|emb|CCD78200.1| hypothetical protein Smp_137830 [Schistosoma mansoni]
Length = 1566
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 87/196 (44%), Gaps = 26/196 (13%)
Query: 251 VPPYDANATTPQQAYPLDKII-------LKGEWDFVQDIFNHVSAGSEVISDA-YPSFVC 302
+PP A+ P+ YP +K++ L E + + V + VI+ + YP ++
Sbjct: 1348 LPPIVLKASCPEDVYPYEKLVPPRISEALNSEIQHIISV--DVDSIDAVINKSIYPQWIR 1405
Query: 303 NRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSF 362
N++ L + + + + S+ +++H+ + D P + + LT F
Sbjct: 1406 NKLCNLCTTKPEGYIKHVTSLV-FLSHMFALFHLPNRDLMRKVPLPDTPNTVSKYLLTQF 1464
Query: 363 SDAESKR------------LSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKL 410
+ + S+ + DK LI+Y+LVL LH D+F+T + D ++ +L
Sbjct: 1465 TASVSRNGMGRLKVRAMSPMLRDK---LITYMLVLILHCDNFKTTVDSLTVDFKIGRERL 1521
Query: 411 RDHFEKLGCKLLREKN 426
F+ LGCK + +N
Sbjct: 1522 TQFFQYLGCKCSKVEN 1537
>gi|402079080|gb|EJT74345.1| hypothetical protein GGTG_08186 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 435
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 99/464 (21%), Positives = 190/464 (40%), Gaps = 75/464 (16%)
Query: 25 KKKNKKRKKDKANTTIDEQPEPELEPERVKAKVQFIPEQPNKAPPLVGYFPSIYKPDVDH 84
K+K + K T E+P E P ++ V + + N PP++ P + P
Sbjct: 5 KRKRAEEAAQKTKKTSAEKPRTESNPHEIR--VSSLIKSKN-FPPVIATTPGLCLPS--- 58
Query: 85 PDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVL 144
+ +P + + + K L+ S +++Y G + HY +G+
Sbjct: 59 -SVQFQPYSKARSSGGKSKKSDSADLLLYSSGHKTLNYTGREDQPKGGDGLLRHY-IGMF 116
Query: 145 DRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGK--GEISAEVQAN--MKAMLDTRYG 200
D T L++V A K+ VRGS A + + + GE E QAN ++ L +G
Sbjct: 117 DPKTGELEVV--EARKVT-----VRGSVRAQRASAEAMGE-QGEQQANADLRTELGQAFG 168
Query: 201 TKKSLRQ--SKKMHALNKENDPESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDANA 258
TKK+ + ++ +A+ N KD A ++ AL ++ + ++P +
Sbjct: 169 TKKAKKALIARVENAITPRN-----KDTA---SGADASEAALMASIREAAASMPTREDLQ 220
Query: 259 TTPQQAYPLDKIILKGEWD--FVQDIFN-HVSAGSEVIS-----------------DAYP 298
A P + KG +D +QD+++ G+EV++ +A
Sbjct: 221 AAVDGAKP----VPKGNYDADLIQDVYDPEEIIGAEVLNSIPVRDWQEAVKNKEPVEALS 276
Query: 299 SFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQ----------- 347
FV NR+H++ E ++ V++ + ++ S G ++
Sbjct: 277 KFVVNRVHRVGEHEESVKRLRILRYLYFLML----LLYQSKSGKRGVRKLPPRDKLRTEL 332
Query: 348 HRIPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSE 407
P + F FSD + + I LL++ VLT D F + ++ DLR+ +
Sbjct: 333 KPAPDAVLDSFRRKFSD--NGEMRKPHIDLLMTTCCVLTCIIDSFELDTLELRDDLRLEQ 390
Query: 408 FKLRDHFEKLGC--KLLR--EKNMLYATLPVPLQFPKAIQRRRR 447
+L ++ ++G K+++ ++ L +PL FPK +R++
Sbjct: 391 KQLDQYYREIGARTKIVKSGDRQTTLVKLMLPLDFPKLRMQRKK 434
>gi|384500416|gb|EIE90907.1| hypothetical protein RO3G_15618 [Rhizopus delemar RA 99-880]
Length = 410
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 78/348 (22%), Positives = 146/348 (41%), Gaps = 44/348 (12%)
Query: 120 VDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAG 179
V + G+++ A+ C Y VGV + TL I I RL V+ A ++
Sbjct: 70 VCFTGSNFGSNALESH-CKYIVGVYSKKENTLNITNAP---IMRLSRSVK----ALQNET 121
Query: 180 KGEISAEVQANMKAMLDTRYGTKKSLRQ--SKKMHALNKENDPESQKDLALKMKSVKIN- 236
+A +A L +GT K+ +Q S + + + E + +L ++ +N
Sbjct: 122 SASSNAARGQAARAALGQAFGTAKAKKQLNSDERNLVTGEQLSDELSNLHAEIGKATVNV 181
Query: 237 ---KEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFV--QDIFNHVSAGSE 291
+E ++S + L +P ++ +A +P++AY L I+ E + + +++ S
Sbjct: 182 PKKQEMMKSMAN--ALPIPSHNLDAESPEEAYDLSSIVTDEELNSLNPKELLKETSLDGV 239
Query: 292 VISDAY--PSFVCNRIHKLREI---QDDVEKQTLASIFSYITHLVK-----FKDQHSMDG 341
AY F+ +R+ + +D +TL I + + V+ KD+ ++
Sbjct: 240 KSHLAYRDSKFINDRLMAIIAASGKKDRKRVRTLMYINILMAYFVRVRSSDLKDRRKVEA 299
Query: 342 GASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAK 401
I L +++ + S+ + +SD KI L Y+ L L + + K
Sbjct: 300 ALKNPSSAILDGLAERY--TESNTRTPVMSD-KILL---YMFTLILSVSGYNVVMDQLGK 353
Query: 402 DLRMSEFKLRDHFEKLGCKL----------LREKNMLYATLPVPLQFP 439
DL + K+ F LGCK+ ++ K+ ATL PL+FP
Sbjct: 354 DLLLKPVKMTSLFRTLGCKVDKATVEECREIKMKSAKKATLVTPLKFP 401
>gi|402217076|gb|EJT97158.1| RNA polymerase I associated factor A49-like protein [Dacryopinax
sp. DJM-731 SS1]
Length = 410
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 78/356 (21%), Positives = 153/356 (42%), Gaps = 43/356 (12%)
Query: 116 RDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVA 174
R + +D++ + A+ + F Y V V D+ L I P A I E + +
Sbjct: 58 RSTEIDFLSVNQDAAAINSGSFSEYMVAVYDQPANKLVIQP-APLYIMSREVKQKQVSTI 116
Query: 175 DKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKS-V 233
D+ G+ VQA + L +G+K+S ++ A D + K +A ++ +
Sbjct: 117 DRSIGR-----RVQA--RNALGQTFGSKRS--KAAIQAAERNRVDVAAMKGIAHHLQEDI 167
Query: 234 KINKEALESTTSDTVL--NVPPYDAN--ATTPQQAYPLDKIILKGEWDFVQDIFNHVSAG 289
++N AL + + + N P N A P Y ++ ++ E +
Sbjct: 168 RMNTRALPNISEQEAIYHNRPGPSPNMEANDPAGVYSINSVVPDSELKACPTRELVAAQS 227
Query: 290 SEVISDAYP---SFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGG---- 342
++ ++ P S N+ L + + K L +F +I+ ++ F+ Q +M+GG
Sbjct: 228 NDERTNILPYNRSTWINQRLILAGQESKISKLHLRLLF-HISCMLCFR-QATMNGGDMDK 285
Query: 343 ASAKQHRIPKILHQKFLTSFSD----AESKRLSDDKIHLLISYVLVLTLHADDFRTNPTD 398
+ + RIP ++ + +S+ +++ R++ + L++++ VL L D+F +
Sbjct: 286 MNGRMSRIPSLVQEGLRARYSEPSRLSKTSRVTSEMDVKLLAHMFVLCLIVDNFAADVGT 345
Query: 399 IAKDLRMSEFKLRDHFEKLGCK-------------LLREKNML-YATLPVPLQFPK 440
+A DL + ++ F +GCK L +E ++ A L VPL FPK
Sbjct: 346 LASDLHLPPARVMKIFRAIGCKVEIPNVDDRTRLGLPKEAHLARRAFLRVPLDFPK 401
>gi|47216115|emb|CAG11183.1| unnamed protein product [Tetraodon nigroviridis]
Length = 416
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 59/287 (20%), Positives = 137/287 (47%), Gaps = 32/287 (11%)
Query: 95 VYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKI 153
+Y+N +E R ++V+ + + YVG+++ A+ C Y VGVL++ T ++
Sbjct: 39 MYKNTDEINPRKKHRRILVA-ESARLSYVGSNFGAGALKCNNLCKYYVGVLNKKTMQME- 96
Query: 154 VPIAANKIFRLEPRVRGSDV---ADKD---AGKGEISAEVQANMKAMLDTRYGTKK---- 203
+ + +IF L P + G V D+D + + ++ + V+A +GT K
Sbjct: 97 --VHSAQIFNLHPVIPGETVETTKDQDPSVSYRDKVDSLVEA---------FGTNKQKRA 145
Query: 204 -SLRQSKKMHALNKENDPESQKDLALKMKSVK-INKEALESTTSDTV-LNVPPYDANATT 260
++R+ ++ + + + ++ K ++ + +E E+ + D + L++PP +A+A +
Sbjct: 146 LNVRRLNQVCSETLHHSVSKAANTVIEQKGLETLQQEVAETESKDELALHLPPCNADADS 205
Query: 261 PQQAYPLDKIILKGEWDFVQDIFNHVSAGS-EVISDAYPSFVCNRIHKLRE-IQDDVE-- 316
P+ Y D ++ E+ +++ ++A + E + C + K+ E +Q E
Sbjct: 206 PENVYLFDDLLSPAEFGALEEAGAKMAALTPEELQKMRSDRGCLCVVKILENMQTAGEEM 265
Query: 317 KQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS 363
++ +A Y++ L+K Q ++ ++ P+I+ K +F+
Sbjct: 266 REKMARCAYYLSLLLKLAGQKNIS-RKFVQEEGCPRIIQSKLFRTFT 311
>gi|336469376|gb|EGO57538.1| hypothetical protein NEUTE1DRAFT_81192 [Neurospora tetrasperma FGSC
2508]
gi|350290989|gb|EGZ72203.1| RNA polymerase I associated factor, A49-like protein [Neurospora
tetrasperma FGSC 2509]
Length = 436
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 83/363 (22%), Positives = 153/363 (42%), Gaps = 37/363 (10%)
Query: 102 KKNRTGRMELVV-SPRDSSVDYVGTS-YSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAAN 159
KKN EL++ S ++DY +G++ P HY +G+ + T ++IV A
Sbjct: 79 KKNGAPAQELLLHSANHRTMDYTAREDRTGDSSDPYLKHY-IGIFNPKTAEVEIVE--AR 135
Query: 160 KIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKEND 219
K L VR D +A + + + M+ L +GTKK+ + + + +
Sbjct: 136 KTV-LRGTVRSQKAVD-EAMEEKTQKQQMMAMRNELGEAFGTKKAKKAIRDVTENAITSQ 193
Query: 220 PESQKDLALKMKSVKI------NKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILK 273
Q +L + M ++K KE L++ D VP + AT Y +II
Sbjct: 194 KVGQSELVM-MDAIKTATKDMSTKEDLQAAV-DNARPVPRGNFAATEIADVYVPSQIIGS 251
Query: 274 GEWDFVQDIFNHVSAGSEVISDAYPS-FVCNRIHKLREIQDDVEKQTLASIFSYITHLVK 332
+ + + + + + PS FV R+ + D V + + Y+ ++
Sbjct: 252 EVLNAI-PVMDWQESVKNLEDIQVPSRFVAKRVSNVASSDDAVHR---LRVLRYLLFVII 307
Query: 333 FKDQHSM--DGGASAKQHR---------IPKILHQKFLTSFSDAESKRLSDDKIHLLISY 381
F + S + G + R P+I+ + FSD R + + LL+++
Sbjct: 308 FWNATSQGRERGTRSIGKRDKLREVMAPAPEIVIENIRRKFSDGGVMRKTH--VDLLMTH 365
Query: 382 VLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKL----LREKNMLYATLPVPLQ 437
D FR N D+ +DL++ + +L +F ++G ++ + +K +A L +PLQ
Sbjct: 366 CCAFAAIIDGFRVNTIDLREDLKLEQKQLNQYFIEIGARVKQQKVADKMENFAVLQLPLQ 425
Query: 438 FPK 440
FPK
Sbjct: 426 FPK 428
>gi|390339924|ref|XP_793654.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA49-like
[Strongylocentrotus purpuratus]
Length = 359
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 138/349 (39%), Gaps = 61/349 (17%)
Query: 91 PKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQ 149
P + R+ + R +V+ DS + YVG +Y +A A C Y VGV D+ T
Sbjct: 36 PSFTLLRSSDTDDKRKNLRRTLVAEADS-MQYVGQNYGDQASKANSMCKYMVGVFDKKTG 94
Query: 150 TLKIVPIAANKIFRLEP----RVRGSDVAD--KDAGKGE---------ISAEVQANMKAM 194
+K+ ++ L P +V D D KD E S+ Q M++
Sbjct: 95 KMKVYNA---QLLELHPWLGKKVEKEDQIDEAKDLSLAEKKDRLTEAFGSSRKQRAMESR 151
Query: 195 LDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVKINKEALESTTSDTVLNVPPY 254
L + GT+ +L S + N P D + DT L +PP
Sbjct: 152 LKNKVGTE-ALETSAAKALTHAANTPSLPLDFEM-----------------DTSL-LPPC 192
Query: 255 DANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDAY------PSFVCNRIHKL 308
D +A PQ Y L+ II +Q + G + +D + P +V + + L
Sbjct: 193 DRSAKRPQGVYKLEDIISARHKKALQVQTEELLLGVKTQADEWKKTKKFPQYVLDHLPAL 252
Query: 309 REIQDDVEKQTLASIFSYIT-----HLVKFKDQHSMDGGA--SAKQHRIPKILHQKF--L 359
+ T A+ +IT H+ K K+ + A K H L++ F +
Sbjct: 253 SREPETERCVTQATNLIFITFLMQLHVAKPKELKTCLKSAPPGVKTH-----LYETFTQV 307
Query: 360 TSFSDAESKR--LSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMS 406
T D +S++ LS L+SY+LVL D F T+ + KDL +S
Sbjct: 308 TPSPDGKSEKRLLSKSCKDKLLSYILVLAQLIDSFHTDIASLTKDLNIS 356
>gi|398393126|ref|XP_003850022.1| hypothetical protein MYCGRDRAFT_24629, partial [Zymoseptoria
tritici IPO323]
gi|339469900|gb|EGP84998.1| hypothetical protein MYCGRDRAFT_24629 [Zymoseptoria tritici IPO323]
Length = 384
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 30/153 (19%)
Query: 322 SIFSYITHLVKFKDQHSMDGGASAKQHRIPK--ILHQK---FLTSFSDAESKRLSDD--- 373
S Y+T L++F D + G SAK ++PK L +K + + D+ KR ++D
Sbjct: 234 SALRYLTLLLEFHDACTSGGRESAK--KVPKRDTLAKKLEAWSPALVDSVRKRFTNDSGN 291
Query: 374 ---KIHL--LISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKL------- 421
K HL L +++ L+L+ DD+ T+ + + DL++ + +F +LGCK+
Sbjct: 292 EIAKWHLDKLYTHICALSLYIDDWVTDTSLLKDDLKLETKAISQYFLELGCKVAAPTEAE 351
Query: 422 --------LREKNMLYATLPVPLQFPKAIQRRR 446
+ K A L +PL+FPK RR
Sbjct: 352 RTRLNMGKAQAKVTRMAKLKLPLEFPKPRVGRR 384
>gi|358056900|dbj|GAA97250.1| hypothetical protein E5Q_03927 [Mixia osmundae IAM 14324]
Length = 466
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/315 (20%), Positives = 129/315 (40%), Gaps = 33/315 (10%)
Query: 137 CHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLD 196
C Y +GV ++ T + + P + I + P + + D+D + A +A L
Sbjct: 111 CKYLLGVRNKRTNLVTLFPTRLHTIHQSIP-AHSAALPDEDEALPDPLARDYRGERASLG 169
Query: 197 TRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKS--------------VKINKEALES 242
+GT+K+ R + A + S++ LA K + + K AL
Sbjct: 170 NAFGTRKAQR---AILAAERNRLDISEETLATKTQPYLAPELLRDDEDEVAQEAKAALVK 226
Query: 243 TTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQ-DIFNHVSAGSE---VISDAYP 298
+ +PP+D AT Q YP+ ++ E+ + +F E ++
Sbjct: 227 AAQEDAALIPPFDREATEVDQIYPMSTLMPDEEFKAIDYRVFGQAEKIEERLALLPTLKS 286
Query: 299 SFVCNRIHKL-----REIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRI--P 351
FV R+ + R EK+ + + Y++ L F+ S+ A A + +
Sbjct: 287 EFVTRRLRAVLPEGRRNKLSSAEKRRIRQVV-YLSCLHAFRSGQSVGKDAVANRLGLFGN 345
Query: 352 KILHQKFLTSFSD---AESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEF 408
+L ++F+ F++ + +++ L +++LV L DDF + +A D +S
Sbjct: 346 PMLVERFIERFTEKGRSGGPQMTKASQKKLNNWILVCCLVIDDFDLDVQSMADDFGISAK 405
Query: 409 KLRDHFEKLGCKLLR 423
K+ LGCK+++
Sbjct: 406 KMTLSLSALGCKIVK 420
>gi|29841423|gb|AAP06455.1| similar to NM_022811 RNA polymerase I associated factor (PAF53) in
Mus musculus [Schistosoma japonicum]
Length = 395
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 86/195 (44%), Gaps = 24/195 (12%)
Query: 251 VPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHV------SAGSEVISDAYPSFVCNR 304
+PP D A+ P+ YP +K++ + + H+ S + + YP +V ++
Sbjct: 177 LPPIDLKASRPEDVYPYNKLVPPKIVEALNSEVQHLLSLDTSSVDTLLTKSIYPQWVMDK 236
Query: 305 IHKLREIQD-DVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS 363
+ L + D K + + ++H++ D P + + LT F+
Sbjct: 237 LCCLCSNKSADYSKHVTSLVL--LSHMLALFHLPKRDLMRKVPLPDTPNNVSKHLLTQFT 294
Query: 364 DAESKR------------LSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLR 411
+ S++ + DK LI+++LVL LH D+F+T ++ DL++ +L
Sbjct: 295 ASISRQGMGRLQVRAMSPMLRDK---LITHILVLILHCDNFKTIIDNLTVDLKIGRDRLA 351
Query: 412 DHFEKLGCKLLREKN 426
F+ LGC+ + +N
Sbjct: 352 QFFQYLGCRCTKVEN 366
>gi|451854510|gb|EMD67803.1| hypothetical protein COCSADRAFT_82745 [Cochliobolus sativus ND90Pr]
Length = 437
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 143/370 (38%), Gaps = 61/370 (16%)
Query: 120 VDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAG 179
+DY+ + Q Y VGV D +T L+IVP+ K + +R S+V +
Sbjct: 84 LDYIAQEERDGSSESQLQDY-VGVYDPATSKLQIVPV---KRVVVRSTLR-SEVEEMRQE 138
Query: 180 KGEISAEVQANM--KAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVKINK 237
+ + A+ M +A L +G+KKS R++ + LN ++A + +
Sbjct: 139 QEALEAQNNTIMAKRAALAAEFGSKKS-RKALEDRTLNAIKSGAGANEVAENVLKQMSSS 197
Query: 238 EALESTTSDTVLNV------PPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSA--- 288
++ T+ D V P + A P YP+ ++ E + D+ + V A
Sbjct: 198 TSVMPTSQDLAAAVDSSKPRPIPNLAAEYPGDVYPISTVV-GSELMTMLDVKDWVQASAA 256
Query: 289 --GSEVISDAYPSFVCNRIHKL---REIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGA 343
G EV S +V RI KL ++IQ + +I + F GGA
Sbjct: 257 GQGVEVTS----KYVARRIVKLAKNKQIQK-------LKVLRFILLCINFNAALIGAGGA 305
Query: 344 SAKQHRI------------PKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADD 391
K+ I P F+ S + + L++++ L DD
Sbjct: 306 RPKKIPIKGKLEAAMGEDTPAGCVLAIRRKFAPEGSSEMPRWNVDNLMTHIAAAALIVDD 365
Query: 392 FRTNPTDIAKDLRMSEFKLRDHFEKLGCKLL---------------REKNMLYATLPVPL 436
+ D+ +DL++ +++ +F +LGCKL N A L +PL
Sbjct: 366 QAVDVNDLREDLKLENKEIKQYFAELGCKLTPPTQTDLTNLKLTKAESINHFVAKLKLPL 425
Query: 437 QFPKAIQRRR 446
FPK R R
Sbjct: 426 TFPKVGGRFR 435
>gi|56754788|gb|AAW25579.1| SJCHGC01627 protein [Schistosoma japonicum]
Length = 277
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 86/195 (44%), Gaps = 24/195 (12%)
Query: 251 VPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHV------SAGSEVISDAYPSFVCNR 304
+PP D A+ P+ YP +K++ + + H+ S + + YP +V ++
Sbjct: 59 LPPIDLKASRPEDVYPYNKLVPPKIVEALNSEVQHLLSLDASSVDTLLTKSIYPQWVMDK 118
Query: 305 IHKLREIQD-DVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS 363
+ L + D K + + ++H++ D P + + LT F+
Sbjct: 119 LCCLCSNKSADYSKHVTSLVL--LSHMLALFHLPKRDLMRKVPLPDTPNNVSKHLLTQFT 176
Query: 364 DAESKR------------LSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLR 411
+ S++ + DK LI+++LVL LH D+F+T ++ DL++ +L
Sbjct: 177 ASISRQGMGRLQVRAMSPMLRDK---LITHILVLILHCDNFKTIIDNLTVDLKIGRDRLA 233
Query: 412 DHFEKLGCKLLREKN 426
F+ LGC+ + +N
Sbjct: 234 QFFQYLGCRCTKVEN 248
>gi|367027046|ref|XP_003662807.1| hypothetical protein MYCTH_2303859 [Myceliophthora thermophila ATCC
42464]
gi|347010076|gb|AEO57562.1| hypothetical protein MYCTH_2303859 [Myceliophthora thermophila ATCC
42464]
Length = 352
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 14/156 (8%)
Query: 300 FVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHR--------IP 351
FV +RI ++ +DDV++ L ++ Q G S + P
Sbjct: 194 FVAHRIVRVAGNEDDVQRLKLLRYLLWVITFWSITRQGRERGTRSIARRDDLREALAPAP 253
Query: 352 KILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLR 411
+++ + FSD R + I LL+++ V D+F N D+ +DL++ + +L
Sbjct: 254 EVVIENIRRKFSDNGVMRKT--HIDLLMTHCCVFASIIDNFEVNTLDLREDLKLEQKQLN 311
Query: 412 DHFEKLGCKLLREKNM----LYATLPVPLQFPKAIQ 443
+F ++G ++ + K+ A L +PLQFPK Q
Sbjct: 312 QYFMEIGARIKQTKSGDKVNHIAKLALPLQFPKMRQ 347
>gi|428181069|gb|EKX49934.1| hypothetical protein GUITHDRAFT_104331 [Guillardia theta CCMP2712]
Length = 375
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 143/337 (42%), Gaps = 46/337 (13%)
Query: 139 YAVGVLDRSTQTLKIVPIAAN--KIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLD 196
Y VG+ D L IV + K+ L+ RV+G KD ++ QA A++D
Sbjct: 43 YVVGMYDPEKDRLVIVDPGDDMAKVIALKKRVKGL----KDNTIAVDFSKEQAR-DALVD 97
Query: 197 TRYGTK--KSLRQSKKMHALNKENDPESQKDLALKMKSVKINKEALESTTSDTVLNV--- 251
+G+K K++ + +K +E + E Q L K +++ KE ++ L V
Sbjct: 98 G-FGSKRVKAVHRKRK----GQETEREEQDALDSVEKELRVKKEETDAAKKLAGLEVDAD 152
Query: 252 ---------PPYDANATTPQQAYPLDKIILKGEWD-FVQDIFNHVSAGSEVISDAYPSFV 301
PP + A T Y ++ EW+ V F ++ E + P+F+
Sbjct: 153 KANGPNELAPPCNLAAETVSDVYKRKDLLDGEEWESIVPGQFFAIAQDPES-AKQLPAFI 211
Query: 302 CNRIHKLREIQDDVEKQTLASIFSYITHLVKFKD---QHSMDGGASAKQHRIPKILHQKF 358
I+ D +K+ +A + SY++ LV F + + K+ IP L F
Sbjct: 212 RRHINLADSYPDKKDKKRVAKLLSYVSFLVFFHNLPNRFRKSPEVLKKELGIPLALGVHF 271
Query: 359 LTSFSDAESKRLSDDKIHL--LISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEK 416
L F+++ + + L+ ++ V L +F + D+A DL++ KL +F +
Sbjct: 272 LKLFAESVGNSYTKPQTQRDRLLLHLAVACLLVTEFEMDFDDLAADLKLHPDKLSAYFRE 331
Query: 417 LGCKL----LREKN---------MLYATLPVPLQFPK 440
+G K+ R KN +A+L +PL FPK
Sbjct: 332 VGAKIKKGAKRGKNDPEESLKVFNYHASLTLPLVFPK 368
>gi|400596241|gb|EJP64017.1| A49-like RNA polymerase I associated factor [Beauveria bassiana
ARSEF 2860]
Length = 444
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 93/418 (22%), Positives = 172/418 (41%), Gaps = 63/418 (15%)
Query: 64 PNKAPPLVGYFPSIYKPD--VDHPDE---EMRPKVRVYRNMNEKKNRTGRMELVVSPRDS 118
P PP++ P P+ V H E E R K + + EKK ++ S
Sbjct: 40 PKSCPPVIAMTPGFELPNDLVFHHYESKSEARAKSKQPKTAMEKK------LMLHSTSHH 93
Query: 119 SVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDA 178
S++Y + + ++ +G+ D T +++V A + R R + A DA
Sbjct: 94 SINYTAREEDSQPGSKPLLNHFLGIYDPKTGKMEVVQ-AKKMVMRSTVRAKQ---ASADA 149
Query: 179 GKGEISAEVQANMKAMLDTRYGTKKSLR--QSKKMHALN---KENDPESQKDLALKMKSV 233
+ + + + ++K L +GTKK+ + + ++A++ K D ++ D A +
Sbjct: 150 MEEKGAKQSMMDLKTDLGQTFGTKKAKKAINERVLNAISPQKKTGDQPAEIDDASRAMLQ 209
Query: 234 KINKEALESTTSDTVLNV-------PPYDANATTPQQAYPLDKIILKGEWDFV-----QD 281
+ K A E T + + V PP + NA Q AY +I D V Q+
Sbjct: 210 SVGKVAAEMATREQLQAVVDDAKPLPPVNLNAEAIQDAYDPKVVIGADILDMVPIREWQE 269
Query: 282 IFNHVSAGSEVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKF------KD 335
H G + +S FV +R++ I + E + + Y++ +V F
Sbjct: 270 KVRH-KEGVQTVS----RFVASRVN---AIASNPEGEERLRVLRYLSFVVAFYLNTKPGR 321
Query: 336 QHSMDGGASAKQHR-----IPKILHQKFLTSFSDAESKRLSDDKIH--LLISYVLVLTLH 388
Q S ++ R P+ + + FS+A R K H LL++++ V
Sbjct: 322 QKGTRSIPSREKLREALAPAPEAVVENIRRKFSEAGEMR----KFHIDLLMTHLCVFACI 377
Query: 389 ADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKL--LREKNMLYAT----LPVPLQFPK 440
D+F + D+ D+R + + +F ++G ++ + +K + T L +PL FPK
Sbjct: 378 TDNFEVDTQDLRHDMRTDDKTMNQYFREIGARVKPVTKKADGHVTSVARLILPLDFPK 435
>gi|348529418|ref|XP_003452210.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49-like
[Oreochromis niloticus]
Length = 420
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 19/187 (10%)
Query: 95 VYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYS-GEAMAPQFCHYAVGVLDRSTQTLKI 153
+ +N E R ++V+ D + YVG ++ G C Y VGVL++ T T+++
Sbjct: 43 MLKNTEESNPRKKTRRILVAESDR-LSYVGQNFGVGSMKCNNLCKYYVGVLNKQTMTMEV 101
Query: 154 VPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHA 213
++F ++P + G D+ K + + + +L +GT K R +
Sbjct: 102 ---HEAQLFNMQPVIPGETT---DSAKPQDTTQTYREKVDLLIEAFGTNKQKR-ALSSRR 154
Query: 214 LNKENDPESQKDLALKMKSVKINKEALES---------TTSDTVLNVPPYDANATTPQQA 264
LN+ Q+ +A K + I ++ LE+ + D L++PP +ANA +
Sbjct: 155 LNQVGSETLQQAVA-KAANTVIGEKGLEALQQEVADAESQGDLALHLPPCNANADKREDV 213
Query: 265 YPLDKII 271
YP D+++
Sbjct: 214 YPFDELL 220
>gi|116192031|ref|XP_001221828.1| hypothetical protein CHGG_05733 [Chaetomium globosum CBS 148.51]
gi|88181646|gb|EAQ89114.1| hypothetical protein CHGG_05733 [Chaetomium globosum CBS 148.51]
Length = 444
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 16/161 (9%)
Query: 300 FVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHR--------IP 351
FV +RI ++ +DDV++ L ++ L G S + P
Sbjct: 286 FVAHRIVRVAGNEDDVQRLKLLRYLLWVITLWTTTKPGRERGTKSIARRDDLRETLAPAP 345
Query: 352 KILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLR 411
+++ + FSD R + I LL+++ V D+F N D+ +DL++ + +L
Sbjct: 346 EVVIENIRRKFSDNGVMRKA--HIDLLMTHCCVFASIIDNFEVNTLDLREDLKLEQKQLN 403
Query: 412 DHFEKLGCKLLREK-----NMLYATLPVPLQFPKAIQRRRR 447
+F ++G ++ + K N L A L +PLQFPK Q +R
Sbjct: 404 QYFLEIGARVKQSKIGDKINHL-AKLALPLQFPKMRQPAKR 443
>gi|407916520|gb|EKG09888.1| RNA polymerase I associated factor A49-like protein [Macrophomina
phaseolina MS6]
Length = 441
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 98/404 (24%), Positives = 167/404 (41%), Gaps = 72/404 (17%)
Query: 93 VRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLK 152
++ Y+ N+K+ R EL++ D + A + VGV D T L+
Sbjct: 61 LKAYKKENDKR----RYELLLQSSDHPRLDFSAREECDGTADSLLKHYVGVYDPKTGDLQ 116
Query: 153 IVP---IAANKIFRLEP---RVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLR 206
++ + R E RV+ ADK + + +++ L +GTKK+
Sbjct: 117 VMEAHKLTLRSTLRSETEEIRVQRDQGADK-------ARQTNFSLRQDLGKEFGTKKA-- 167
Query: 207 QSKKMHALNKENDPESQKDLALKMKSVKINKEALESTTSDTV-------------LNVPP 253
KK A EN A + + K LES T N P
Sbjct: 168 --KKALASITENAITPTAGAAEGKVTDAVAKAVLESMAGATADMPTREALQAAVDENKPR 225
Query: 254 YDAN--ATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDAYPS-FVCNRIHKLRE 310
AN ATTP + Y +++I E + D+ + + A ++ S FV RI +L
Sbjct: 226 PKANLEATTPAEVYTPEELI-GNESMRLLDVKSWIDAAAKKEDIQLTSMFVARRIEEL-A 283
Query: 311 IQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKI--LHQKFLTSFSDAESK 368
++ DV+K + Y+ L+ F ++ G + + R+PK L +K S S E
Sbjct: 284 LKRDVKK---LKVMKYMLLLIDF--LAALRSGRNGAK-RLPKREELEKKTNASGSLLEGV 337
Query: 369 R--------LSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCK 420
R ++ + LI+++ L+L D++ + D+ +DLR+ ++ ++ ++GCK
Sbjct: 338 RRKFTEGTEMTKWHVDYLITHLAALSLFIDNYSVDTFDLREDLRLDNKQIAQYYHEIGCK 397
Query: 421 LL------REK---------NMLYATLPVPLQFPK--AIQRRRR 447
+ RE+ N A L +PL FPK AI R+R
Sbjct: 398 VGPPTEKDREQHKWTKAEAVNHKIARLKIPLDFPKQRAIPMRKR 441
>gi|189190428|ref|XP_001931553.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973159|gb|EDU40658.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 439
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/345 (20%), Positives = 140/345 (40%), Gaps = 65/345 (18%)
Query: 141 VGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQ--ANMKAMLDTR 198
+G+ D +T+ L+IVP+ + R R S++A+ + + + A +A L
Sbjct: 104 IGIFDPATKKLQIVPVK-RVVVRATLR---SEIAEMQEEQARLDTQTSTIAEKRAALAAE 159
Query: 199 YGTKKSLRQSKKMHALNK-ENDPESQKDLALKMKSVKINKEALESTTSDT-VLNV----P 252
+G+KKS R++ + LN ++ P ++ A + + E + + T +N P
Sbjct: 160 FGSKKS-RKALEDRTLNAIKSGPGAEAVAANILNQMASATEGMPTRDELTEAINSAKPRP 218
Query: 253 PYDANATTPQQAYPLDKIILK--------GEWDFVQDIFNHVSAGSEVISDAYPSFVCNR 304
+ A P YP+D ++ +W D ++ S+ ++ F N+
Sbjct: 219 TPNLAAEYPGDVYPIDTVVGSELMTILEVKDWVEASDAKQAINVTSKYVAKRIVKFAKNK 278
Query: 305 -IHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIP-KILHQKFLTSF 362
I KL+ + +I + F ++ GG ++ +IP K +K +
Sbjct: 279 QIQKLK-------------VLRFILLCINF--NAALFGGGGSRPKKIPVKGKLEKAMGED 323
Query: 363 SDA------------ESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKL 410
+ A E + + L++++ L DDF + D+ DL++ ++
Sbjct: 324 TSAGCIMAIRRKFAPEGGEMPRWNVDYLMTHIAAAALIVDDFAVDVNDLRDDLKLENKEI 383
Query: 411 RDHFEKLGCKL---------------LREKNMLYATLPVPLQFPK 440
+ +F +LGCK+ + N A L +PL FPK
Sbjct: 384 KQYFMELGCKVSAPTQADLANLKVANAAKANHHIAKLQLPLSFPK 428
>gi|451999584|gb|EMD92046.1| hypothetical protein COCHEDRAFT_1099376 [Cochliobolus
heterostrophus C5]
Length = 437
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 84/370 (22%), Positives = 142/370 (38%), Gaps = 61/370 (16%)
Query: 120 VDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAG 179
+DY+ + Q Y VGV D +T L+IVP+ K + +R S+V +
Sbjct: 84 LDYIAQEECDGSSESQLQDY-VGVYDPATSKLQIVPV---KRVVVRSTLR-SEVEEMRQE 138
Query: 180 KGEISAEVQANM--KAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVKINK 237
+ + A+ M +A L +G+KKS R++ + LN ++A + +
Sbjct: 139 QEALEAQNNTIMAKRAALAAEFGSKKS-RKALEDRTLNAIKSGAGANEVAENVLKQMSSS 197
Query: 238 EALESTTSDTVLNV------PPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSA--- 288
++ T+ D V P + A P YP+ ++ E + D+ + V A
Sbjct: 198 TSVMPTSQDLAAAVDSSKPRPIPNLAAEYPGDVYPISTVV-GSELMTMLDVKDWVQASAA 256
Query: 289 --GSEVISDAYPSFVCNRIHKL---REIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGA 343
G EV S +V RI KL ++IQ + +I + F GG
Sbjct: 257 GQGVEVTS----KYVARRIVKLAKNKQIQK-------LKVLRFILLCINFNAALIGAGGT 305
Query: 344 SAKQHRI------------PKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADD 391
K+ I P F+ S + + L++++ L DD
Sbjct: 306 RPKKIPIKGKLEAAMGEDAPAGCVLAIRRKFAPEGSSEMPRWNVDNLMTHIAAAALIVDD 365
Query: 392 FRTNPTDIAKDLRMSEFKLRDHFEKLGCKLL---------------REKNMLYATLPVPL 436
+ D+ +DL++ +++ +F +LGCKL N A L +PL
Sbjct: 366 QAVDVNDLREDLKLENKEIKQYFAELGCKLTPPTQTDLTNLKLTKAESINHFVAKLKLPL 425
Query: 437 QFPKAIQRRR 446
FPK R R
Sbjct: 426 TFPKLGGRFR 435
>gi|298704749|emb|CBJ28345.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 460
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 79/376 (21%), Positives = 143/376 (38%), Gaps = 54/376 (14%)
Query: 112 VVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGS 171
+V +DY G ++ A + C + VGV D +T L + A + L
Sbjct: 93 IVMGDGGRMDYWGLNFGPGAESNDLCRFLVGVEDGATGEL--ILHEAGHAYSLR-----Q 145
Query: 172 DVADKDAGKGEISAEV--QANMKAMLDTRYGTKKS-----LRQSKKMHALNKENDPESQK 224
V DKD + + E K L ++G+KK R + + A + +
Sbjct: 146 SVGDKDDNIEDFAMEGLEYKQRKDALVNQFGSKKKKAAIRSRDANVIQAGSVVGGSAMSR 205
Query: 225 DLALKMKSVKINKEAL---ESTTSDTVLN---------VPPYDANATTPQQAYPLDKIIL 272
L +K + + T +D L +P A+TP+ Y I
Sbjct: 206 VLGRALKEEEGGGAGGVDGDPTATDGALAAVEEARRRFLPKMRTEASTPEGVYSAGDIAG 265
Query: 273 KGEWDFVQDIFN----HVSAG--------SEVISDAYPSFVCNRIHKLREIQDDVEKQTL 320
E + ++ + + G +E ++ P FV R+ L ++ + +K+ +
Sbjct: 266 VQELESMEREIDRAAEQIEGGMHQWAKDFAERPRESCPHFVGKRLTLLLDLGERNQKRRM 325
Query: 321 ASIFSYITHLVKFKDQHSMDGGASAKQHR---IPKILHQKFLTSFSDAESKRLSDDKIHL 377
+ Y+ H+ F ++ G A+ IP+I+ ++ L FS E K ++
Sbjct: 326 LELL-YLRHMCVFHHASALLKGTPAQLSAKLDIPEIVLRRLLEKFSVCEKKGAGGTANYV 384
Query: 378 --------LISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLY 429
L+ + L L L + R +A+D R+S + R +LGC
Sbjct: 385 RTKTLKNQLVVHALCLALVLEGCRLEIGVLAEDFRLSTAEARSMLRELGCTATNTS---- 440
Query: 430 ATLPVPLQFPKAIQRR 445
A L +PL FP++ + R
Sbjct: 441 AHLKLPLTFPRSRKAR 456
>gi|242793699|ref|XP_002482218.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218718806|gb|EED18226.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 486
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 82/387 (21%), Positives = 151/387 (39%), Gaps = 77/387 (19%)
Query: 120 VDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAG 179
+D+VGT + +A + Q HY + ++D +T + V + + + S AD+D
Sbjct: 102 LDFVGTEATEDADS-QLKHY-IAIVDPEKKTWQFVEVRKMTLRSTVKKRNPSVAADEDDS 159
Query: 180 KG-EISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDP-------ESQKDLALKMK 231
G ++S Q N L +GTK S R++ + A N P ES ++ ++
Sbjct: 160 DGADVSYRDQRNA---LTEAFGTKAS-RKAAQSEAENSMLAPAGGSSAIESAILSSMPLQ 215
Query: 232 SVKINKEALESTTSDTVLN--VPPYDANATTPQQAYPLDKIILKGEWDF----VQDIFNH 285
+ + + N +P + +A P + Y ++ ++ G +Q+ +
Sbjct: 216 GIATANLKAQELQAQVQANKPIPTANLSAMHPSEVYTIESLVAGGMSTLNQLPIQEWQDA 275
Query: 286 VSAGSEVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASA 345
V+AG V+S + +V +R+ + + + Q L I + I K D S
Sbjct: 276 VNAGEAVMSTSR--YVAHRVDAVVKSTNVTHLQLLRYILALIELTKNIKRGKGSDPPGS- 332
Query: 346 KQHRIPKILHQKFLTSFSDAESKRLSD------------------DKIHLLISYVLVLTL 387
RIP K L S + + +L + I LL + + LTL
Sbjct: 333 --KRIPLRADLKRLLSGGSSATTQLPEPVVEAIRRKFAPGGIMIRSNITLLYTTLCALTL 390
Query: 388 HA------------------DDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLY 429
H + T+P+D+ DLR+ + +F++LGC++ + + +
Sbjct: 391 HIPPTPTKDGGTSSLGGNTPTELATDPSDLRDDLRLDTATITQYFKELGCRVEKPRESEF 450
Query: 430 A----------------TLPVPLQFPK 440
A L +PL FPK
Sbjct: 451 AKFGIKSKAEAANKRVCKLRIPLDFPK 477
>gi|410929505|ref|XP_003978140.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49-like
[Takifugu rubripes]
Length = 417
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/280 (19%), Positives = 126/280 (45%), Gaps = 20/280 (7%)
Query: 95 VYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAM--APQFCHYAVGVLDRSTQTLK 152
+Y+N +E R ++V+ + + YVG+++ GEA C Y VGVL++ T ++
Sbjct: 39 MYKNTDEINPRKKHRRILVAESER-LSYVGSNF-GEASLKCNNLCKYYVGVLNKKTMQME 96
Query: 153 IVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QSKK 210
+ + ++F L P + G + A +S + + L +GT K R S++
Sbjct: 97 V---HSAQVFNLCPIIPGMKIETTKAHDTSLSYRDKVDS---LVEAFGTSKQKRSLNSRR 150
Query: 211 MHALNKENDPES---QKDLALKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPL 267
++ + E + D ++ K ++ ++ + + + L++PP A+A TP+ Y
Sbjct: 151 LNQVCSETLHHAVAKAADTVIEQKGLEALQQEVAESQEELALHLPPCYADADTPENVYLF 210
Query: 268 DKIILKGEWDFVQDIFNHVSAGS----EVISDAYPSFVCNRIHKLREIQDDVEKQTLASI 323
+ ++ E++ +++ ++A + + + D I + + + + ++
Sbjct: 211 EDLLSPAEFEALEEGGAKMAALTPEELQKMRDDRQCLCAVNILENMQTAGEEMRDKMSRC 270
Query: 324 FSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS 363
Y++ L+K Q + K+ P+I+ K +F+
Sbjct: 271 AYYLSLLLKLAQQKYV-ARKFGKEQGCPRIIQSKLFRNFT 309
>gi|118400982|ref|XP_001032812.1| hypothetical protein TTHERM_00485990 [Tetrahymena thermophila]
gi|89287157|gb|EAR85149.1| hypothetical protein TTHERM_00485990 [Tetrahymena thermophila
SB210]
Length = 437
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 91/423 (21%), Positives = 166/423 (39%), Gaps = 83/423 (19%)
Query: 56 KVQFIPEQPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRM-----E 110
KV+ I ++ ++ P + F P D E KVRV KK RM E
Sbjct: 4 KVEVIKKKADQRGPFLANFEQNIPP---QEDFEQSIKVRVQEK--NKKKTVLRMSNDILE 58
Query: 111 LVVSPRDSSVDYV------------GTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAA 158
+ ++ S Y G S S Y +G+ D T T+K+ +
Sbjct: 59 IFGKGQNCSGQYNSNSNETIINENEGASESNNNANKCSSAYLIGIKDDKTNTIKLFQVE- 117
Query: 159 NKIFRLE----PRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHAL 214
++F+L+ + S D + K + + Q K ML +GT KS ++ K+M
Sbjct: 118 -QLFKLQQHTLKELENSQNIDSNIAKTKTTHMEQ---KQMLVQEFGTVKSRKKVKQM--- 170
Query: 215 NKENDPESQKDLALKMK-SVKINKEALESTTSDTVLN------------VPPYDANATTP 261
+N+ +++L+ +K S++ E LE+ + + +P +D P
Sbjct: 171 --QNNIVHEQNLSQNLKVSIQDKGEELEADAMNHTIRERDQEIDSKREFLPEFDLETKNP 228
Query: 262 QQAYPLDKIILKGEWDFVQDIFNHVSAGSEVIS--DAYPSFVCNRIHKLREIQDDVEKQ- 318
+ + L+ II + +S +E I D S N H +R + D +
Sbjct: 229 TEIFSLNSIITPED-------LTTLSFAAEYIKKRDLIKSECKNMTHLVRNLLFDFQTHF 281
Query: 319 -------TLASIFSYITHLVKFKDQHSMDGGA---SAKQHRIPKILHQKFLTSFSDA--- 365
+A Y+ +L++ ++ + G +K+ IP L + L +F A
Sbjct: 282 GGRNNHSLIAKQLVYLDYLLRVANKVKLSGKTLDEVSKETNIPANLLKNILKNFYQAFQS 341
Query: 366 -------ESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLG 418
S+ L D LISY++VL L D++ + +A L++ + + ++ G
Sbjct: 342 GSGVIYQRSQALKDK----LISYIIVLALMVFDYKFDAAPLASLLKIEPKRFLTYAKEAG 397
Query: 419 CKL 421
C +
Sbjct: 398 CSV 400
>gi|159484402|ref|XP_001700247.1| predicted protein [Chlamydomonas reinhardtii]
gi|158272563|gb|EDO98362.1| predicted protein [Chlamydomonas reinhardtii]
Length = 136
Score = 48.5 bits (114), Expect = 0.007, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 48 LEPERVKAKVQFIPEQPNKAPPLVGYFPSIY-KPDVDHPDEEMRPKV--RVYRNMNEKKN 104
+ +R + V+ E + P V Y PS+ VD+ P R+ +++ ++
Sbjct: 1 MSSKRQRIAVELNGEAADVVAPSVCYLPSMQANGTVDNAGAPTLPSAAKRLKFSVHSRRG 60
Query: 105 RTGRMELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRL 164
G +LV +++VG S E Q C YAVGV + L++ +A+ ++FRL
Sbjct: 61 AHGGTQLV-QANLGDIEFVGRSDGDENAGMQPCCYAVGVFSPAEGKLRLTAVASERLFRL 119
Query: 165 EPRVRGSDVADKDAG 179
+ R++G A AG
Sbjct: 120 DSRLQGLVYAPTGAG 134
>gi|432844921|ref|XP_004065777.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49-like
[Oryzias latipes]
Length = 416
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 79/387 (20%), Positives = 175/387 (45%), Gaps = 49/387 (12%)
Query: 96 YRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKIV 154
++N+ E R +VV+ D + YVG ++ + M C Y VGVL++ T ++I
Sbjct: 40 FKNIEENNPRKKIRRIVVAESDR-LSYVGQNFGEDLMKCNNLCRYYVGVLNKETMQMEI- 97
Query: 155 PIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHAL 214
+ ++F ++P + G A DA + + + + ++++ +GT K R + L
Sbjct: 98 --HSAQLFNMQPVIPGE--ATHDAKPQDTTLSYREKVDSLIEA-FGTNKQKR-ALSSRRL 151
Query: 215 NKENDPESQKDLALKMKSVKINK--EALESTTSDT------VLNVPPYDANATTPQQAYP 266
N+ +A +V NK EAL+ ++T L++PP +A+A + YP
Sbjct: 152 NQVGSDALHHAVAEAASTVIDNKGLEALQQEVAETESQGALSLHLPPCNADADKKEDVYP 211
Query: 267 LDKIILKGEWDFVQDIFNHVSAGSEV----ISDAYPSFVCNRIHKLREIQDDVE-KQTLA 321
++++ E+ ++ ++A S+ + D + +C H L + E ++ A
Sbjct: 212 FEELLSPVEFAALEPNGQKMTALSQEELQKLKDQRGN-LCVMKH-LENMPSASEPREKTA 269
Query: 322 SIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIHLLISY 381
Y++ L+K Q + ++ P+++ K L +F+ + ++ ++ ++S
Sbjct: 270 RCAFYLSLLIKLAHQKIVTRKFWTEEG-CPRVIQSKILRTFT---VETYNNGRVQNIVST 325
Query: 382 VLVLTLHA---------DDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLR--------- 423
+ + A D N + + +DL ++E ++ + + +G + +
Sbjct: 326 SMRAKIAAHSLALLLHLGDMTVNLSLLHRDLEINEARMLEIAKSMGLTISKPARGKGDEA 385
Query: 424 --EKNMLYATLPVPL-QFPKAIQRRRR 447
+ YA+L +PL ++ K ++RR+R
Sbjct: 386 QLQDEHRYASLVLPLIKYDKFVERRKR 412
>gi|336263290|ref|XP_003346425.1| hypothetical protein SMAC_05320 [Sordaria macrospora k-hell]
gi|380089936|emb|CCC12247.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 436
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 89/378 (23%), Positives = 160/378 (42%), Gaps = 67/378 (17%)
Query: 102 KKNRTGRMELVV-SPRDSSVDYVGTS-YSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAAN 159
KKN EL++ S ++DY +G++ P HY +G+ + T ++IV A
Sbjct: 79 KKNGAPAQELLLHSANHRTMDYTAREDRTGDSSDPYLKHY-IGIFNPKTAEVEIVE--AR 135
Query: 160 KIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKEND 219
K L VR D+ + ++ A M+ L +GTKK+ + + + EN
Sbjct: 136 KTV-LRGTVRSQKAVDEAMEEKNQKQQMMA-MRNELGEAFGTKKAKKAIRDV----TENA 189
Query: 220 PESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFV 279
SQK +S + +A+++ T D + Q A + + +G +D
Sbjct: 190 ITSQK----VGQSELVMMDAIKTATKDM--------STKEDLQAAVDNARPVPRGNFD-A 236
Query: 280 QDIFN-HVSA---GSEVISDAYP------------------SFVCNRIHKLREIQDDVEK 317
+DI + +V A GSEV+ +A P FV R+ + D V +
Sbjct: 237 KDIADVYVPAQIIGSEVL-NAIPVMDWQESVKNLEDIQVPSRFVAKRVSNVASSDDAVHR 295
Query: 318 QTLASIFSYITHLVKFKDQHSM--DGGASAKQHR---------IPKILHQKFLTSFSDAE 366
+ Y+ ++ F + S + G + R P+I+ + FSD
Sbjct: 296 ---LRVLRYLLFVIIFWNATSQGRERGTRSIGKRDKLREVMAPAPEIVIENIRRKFSDGG 352
Query: 367 SKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKL----L 422
R + + LL+++ D FR N D+ +DL++ + +L +F ++G ++ +
Sbjct: 353 VMRKT--HVDLLMTHCCAFAEIIDGFRVNTIDLREDLKLEQKQLNQYFIEIGARVKQQKV 410
Query: 423 REKNMLYATLPVPLQFPK 440
+K +A L +PLQFPK
Sbjct: 411 ADKMENFAVLQLPLQFPK 428
>gi|345565756|gb|EGX48704.1| hypothetical protein AOL_s00079g343 [Arthrobotrys oligospora ATCC
24927]
Length = 454
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 79/369 (21%), Positives = 156/369 (42%), Gaps = 59/369 (15%)
Query: 127 YSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAE 186
Y G Y VGV D ++ + P + R R++ ++ +K A G +
Sbjct: 97 YDGRVEGEDGLSYYVGVYDPEKGSVDVYPSPLLHVRRQVRRLKEKEIPEK-ASTGTLMDS 155
Query: 187 VQANMKAMLDTRYGTKKSLRQSK--KMHALNKENDPESQKDLALKMKSVKINKEALESTT 244
QA L +G + S + K +++A+ + + S ++ T
Sbjct: 156 RQA-----LSAAFGNRTSRKALKDEQLNAITSATLGSTGATSVVSAISSAVDSATALLPT 210
Query: 245 SDTVLN-------VPPYDAN--ATTPQQAYPLDKI----ILKGEWDFVQDIFNHVSAGSE 291
S+++ +PP A+ T Y ++++ +L G + V++ +V AG E
Sbjct: 211 SESLRTGSGNSKYLPPIHADEEGVTVDTVYRVEEMVEKKVLDGCAEGVREWEKNVRAGGE 270
Query: 292 VISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIP 351
V S P +V +RI + + +V K+ I YI H+++F H + + + P
Sbjct: 271 VESTISPHYVTSRIRGVIDSGANVTKRL--KILRYIEHMIQF---HRLFINSFSNTVYRP 325
Query: 352 KI----------LHQKFLTSFSDAES-----KRLSDDKIHLLISYVLVLTLHA-DDFRTN 395
K+ + + +F+DA++ ++LS K+ L ++++L L +D R +
Sbjct: 326 KLYDTFVSDDKAITSHLIDTFTDAKNQNKNERQLSKTKLTKLYCWLMILCLKVEEDGRMD 385
Query: 396 PTDIAKDLRMSEFKLRDHFEKLGCKL--LRE---KNMLYA----------TLPVPLQFP- 439
D+ +DL++ ++ ++G ++ +E K M Y L +PL FP
Sbjct: 386 LFDLVQDLQIERREVEMAAREIGARVEAFKEGYLKLMGYGKEEAREHKLVALRLPLVFPK 445
Query: 440 -KAIQRRRR 447
K +Q R+R
Sbjct: 446 NKMLQVRKR 454
>gi|345308230|ref|XP_001510190.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA49-like
[Ornithorhynchus anatinus]
Length = 208
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 23/146 (15%)
Query: 321 ASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIHLLIS 380
A Y+ LV+F Q + ++ Q IP I++ K L +F+ + ++ LIS
Sbjct: 64 ARCLWYLNTLVRFGFQKVIKRKSALGQG-IPHIINSKLLKNFTVLT---YNGGRVQNLIS 119
Query: 381 ---------YVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLR-------- 423
YV+ L LH DFR + T + +D+R+ E ++ + + + K+ +
Sbjct: 120 ASMEAKITAYVIALALHVSDFRIDLTVLQRDMRLGEKRILEIAKAMRLKVSKRPVPVGAE 179
Query: 424 --EKNMLYATLPVPLQFPKAIQRRRR 447
+ M TLP+P+ P QR+R+
Sbjct: 180 EEDHKMGILTLPLPVYRPPNSQRKRK 205
>gi|302658553|ref|XP_003020978.1| hypothetical protein TRV_04843 [Trichophyton verrucosum HKI 0517]
gi|291184853|gb|EFE40360.1| hypothetical protein TRV_04843 [Trichophyton verrucosum HKI 0517]
Length = 501
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 101/253 (39%), Gaps = 64/253 (25%)
Query: 251 VPPYDANATTPQQAYPLDKIILKGEWDF----VQDIFNHVSAGSEVISDAYPSFVCNRIH 306
+P + +AT P Y ++ ++ G VQD V+A + + + FV NR+
Sbjct: 251 LPQPNLSATQPADVYSIESLVPSGLLTLRKIPVQDWQAAVAASEGITTSS--RFVANRVE 308
Query: 307 KLREIQDDVEKQTLASIFSYITHLVKFKD--QHSMDGGASAKQHRIP------KILHQKF 358
+ D +T+ + +I L++F + S GG ++P +IL
Sbjct: 309 AAVQSGD----KTVVQLLRFILILIEFSRSLKRSPGGGRGLDSRKLPPREDLRRILSTAV 364
Query: 359 LT----------SFSDAESKR-------LSDDKIHLLISYVLVLTLH------------A 389
+ SF D+ ++ LS + I LL + + ++LH
Sbjct: 365 YSETNTTPTITDSFLDSIRRKFVPQGSFLSRNDITLLHTTICAMSLHIPPASGKTGGSNV 424
Query: 390 DDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYAT-----------------L 432
+ T+P D+ DLR+ + +F +LGCK+ + + +A L
Sbjct: 425 SELATDPADLRDDLRLENDTILKYFRELGCKVDKPRESEFAKWSIKGGKAEAASRRIARL 484
Query: 433 PVPLQFPKAIQRR 445
+P++FPK + R
Sbjct: 485 KIPVEFPKMSRGR 497
>gi|380494773|emb|CCF32901.1| A49-like RNA polymerase I associated factor [Colletotrichum
higginsianum]
Length = 440
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 90/362 (24%), Positives = 150/362 (41%), Gaps = 62/362 (17%)
Query: 119 SVDYV----GTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVA 174
++DY G S S +A+ HY VG+ D T TL++V A K+ VRG A
Sbjct: 92 TMDYTAREDGISDSQQALK----HY-VGIFDPKTGTLQVV--EAKKMV-----VRGVARA 139
Query: 175 DKDAGKGEISA----EVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLA--- 227
K A +G + A + ++K L +GTKK+ +++ + ALN DP +D A
Sbjct: 140 -KHAPEGAMRAPADNQSYYDLKKDLGQTFGTKKA-KKAIESVALN-AIDPNKTRDSAPKE 196
Query: 228 LKMKSVKINKEALESTTS-----------DTVLNVPPYDANATTPQQAYPLDKIILKGEW 276
L S I +E T + D VP + A Q Y D+ I +
Sbjct: 197 LDTASKAILREIGGVTATMASRDQLQAAVDEAKPVPRPNLEAEAIQDVYDPDEFIGREIL 256
Query: 277 DFV--QDIFNHVSAGSEVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFK 334
V +D + G E++ Y V +R+ K+ + V K L F ++
Sbjct: 257 AAVPVKDWIDPAKNGEEIL--CYSRHVASRVKKVAD-SGSVAKMRLLRYFYFLFTFYIMA 313
Query: 335 DQHSMDGGASA--------KQHRIPKILHQKFLTSFSDAESKRLSDDKIHL--LISYVLV 384
G + P+++ ++ FSD R K HL L+++
Sbjct: 314 APGKQRGTKRVPPRDKLKERMSPAPQVVIEQIRRKFSDGGEMR----KFHLDLLVTHCCA 369
Query: 385 LTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKL----LREKN--MLYATLPVPLQF 438
+ D+F + + + +DLR+ + + ++F ++G K+ +EK A L +PL F
Sbjct: 370 IACIIDNFEVDTSQLREDLRLDQKDINNYFYEIGAKVKQVATKEKGRPAHVAKLALPLNF 429
Query: 439 PK 440
PK
Sbjct: 430 PK 431
>gi|330928063|ref|XP_003302112.1| hypothetical protein PTT_13811 [Pyrenophora teres f. teres 0-1]
gi|311322693|gb|EFQ89773.1| hypothetical protein PTT_13811 [Pyrenophora teres f. teres 0-1]
Length = 439
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 73/339 (21%), Positives = 143/339 (42%), Gaps = 53/339 (15%)
Query: 141 VGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYG 200
+GV D +T+ L++VP+ + R R +++ ++ A + + A +A L +G
Sbjct: 104 IGVYDPATKKLQLVPVK-RVVVRCTLRSEMAEMQEEQA-RLDTQTSTIAEKRAALAAEFG 161
Query: 201 TKKSLRQSKKMHALNK-ENDPESQKDLALKMKSVKINKEALESTTSDTV-LNV----PPY 254
+KKS R++ + LN ++ P + A + + E + + T +N P
Sbjct: 162 SKKS-RKALEDRTLNAIKSGPGADAVAANILDQMASATEGMPTRDELTAAINSSKPRPTP 220
Query: 255 DANATTPQQAYPLDKIILKGEWDFVQDIFNHV--SAGSEVISDAYPSFVCNRIHKL---R 309
+ A P YP+D ++ E + ++ + V SA + I + +V RI K +
Sbjct: 221 NLAAEYPGDVYPIDTVV-GSELMTILEVKDWVEASAAKQAI-NVTSKYVAKRIVKFAKNK 278
Query: 310 EIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIP-KILHQKFLTSFSDA--- 365
+IQ + +I + F ++ GG ++ +IP K +K + + A
Sbjct: 279 QIQK-------LKVLRFILLCINF--NAALFGGGGSRPKKIPVKGKLEKAMGEDTSAGCI 329
Query: 366 ---------ESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEK 416
E + + L++++ L DDF + D+ DL++ +++ +F +
Sbjct: 330 MAIRRKFAPEGGEMPRWNVDNLMTHIAAAALIVDDFAVDVNDLRDDLKLENKQIKQYFME 389
Query: 417 LGCKL---------------LREKNMLYATLPVPLQFPK 440
LGCK+ + N A L +PL FPK
Sbjct: 390 LGCKVSAPTQADLANLKVTNAAKANHHIAQLKLPLSFPK 428
>gi|322697125|gb|EFY88908.1| hypothetical protein MAC_05002 [Metarhizium acridum CQMa 102]
Length = 444
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 96/434 (22%), Positives = 172/434 (39%), Gaps = 79/434 (18%)
Query: 63 QPNKAPPLVGYFPSI-------YKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVV-S 114
+P PP++ P + + P P E +R K + K G EL++ S
Sbjct: 39 RPKHCPPVIATTPGVEISENIAFYPY--QPQEGLRSK-------STKLKHAGDKELLLHS 89
Query: 115 PRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVA 174
S+DY G+ Q ++ +G+ D T L++V A K+ VRG A
Sbjct: 90 TSHRSLDYTARE-EGKRGFNQLVNHYIGIYDPKTGNLEVV--EAKKMV-----VRGMVRA 141
Query: 175 DKDAGKGEISAEVQANM---KAMLDTRYGTKKSLRQSKK--MHALNKENDP--------E 221
+ + + + NM K L +GTKK+ + ++ ++A+ + P +
Sbjct: 142 KQASASSMGENQAKQNMMERKTDLGQTFGTKKAKKAIRETVLNAIAPQRKPGDSPTKIDD 201
Query: 222 SQKDLALKMKSVKIN---KEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDF 278
+ K + + V N +E L++ D VP + +A Q Y + I+ +
Sbjct: 202 AGKAILSSVGEVTTNMATREELQAAV-DEAKPVPKANLDALDIQDVYDPNVIVGADILNL 260
Query: 279 V-----QDIFNHVSAGSEVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKF 333
V Q+ H G + IS FV R++ + D V T + Y++ ++ F
Sbjct: 261 VPIREWQEKVRH-KEGIQTIS----RFVAARVNAIASDDDAV---TRLRVLRYLSFVLMF 312
Query: 334 KDQHSMDGGASAKQ-----------HRIPKILHQKFLTSFSDAESKRLSDDKIH--LLIS 380
+ + +Q P+ + + FSDA R K H LL++
Sbjct: 313 YLKTTPGKQRGTRQVPPREKLRELLSPAPEAVVESIRRKFSDAGVVR----KFHIDLLMA 368
Query: 381 YVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKN-------MLYATLP 433
Y V D+F + ++ DLR+ + + +F ++G ++ N + A L
Sbjct: 369 YCCVFACIVDNFEVDTQNLRDDLRVDQKTINQYFHEIGGRVRPVSNKAEGGRPIYVARLT 428
Query: 434 VPLQFPKAIQRRRR 447
+PL FPK Q +R
Sbjct: 429 LPLDFPKQRQMAQR 442
>gi|327300563|ref|XP_003234974.1| hypothetical protein TERG_04025 [Trichophyton rubrum CBS 118892]
gi|326462326|gb|EGD87779.1| hypothetical protein TERG_04025 [Trichophyton rubrum CBS 118892]
Length = 480
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 102/492 (20%), Positives = 189/492 (38%), Gaps = 94/492 (19%)
Query: 26 KKNKKRKKDKAN-----TTIDEQPEPELEPERVKAKVQFIPEQPNKAPPLVGYFPSIYKP 80
+K +KR D+ + I PEP AKVQ++ P ++ P + P
Sbjct: 7 EKKRKRASDRHDRPSKKPAIHTNPEP--------AKVQYLKNTAGHVP-IIASSPGLTVP 57
Query: 81 DVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAMAPQFCHYA 140
+ ++P+ + ++ E N L+ + +++ G GE ++
Sbjct: 58 ETLPLSTYIKPRQQRMKH-TENANLAMTEALLHTSGHPKLNFTG--REGENQLDNLLNHY 114
Query: 141 VGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYG 200
V V D T++++ A + R PR +V ++ +G + Q KA L +G
Sbjct: 115 VAVYDLKDNTVQLLE-ARKMMIRGCPRESIEEVEEESEEEGTKTVLSQ---KAALAAAFG 170
Query: 201 TKKSLRQSKKM--HALNKENDPES----QKDLALKMKSVKINKEALESTTSDTVLN---V 251
TK + + + +AL S + L M + A E + + +
Sbjct: 171 TKLARKAVAAITENALTSNASASSTQAAESALLSSMPQDDMTNAAAERSAQAEIQASKPL 230
Query: 252 PPYDANATTPQQAYPLDKIILKGEWDF----VQDIFNHVSAGSEVISDAYPSFVCNRIHK 307
P + +AT P Y ++ ++ G VQD + A SE I+ + FV NR+
Sbjct: 231 PQPNLSATQPADVYSIESLVPSGLLTLHKIPVQD-WQAAIAASEGITTSS-RFVANRVEA 288
Query: 308 LREIQDDVEKQTLASIFSYITHLVKFKD--QHSMDGGASAKQHRIP------KILHQK-- 357
+ D +T+ + +I L++F + S GG ++P +IL
Sbjct: 289 AVQSGD----KTVVQLLRFILILIEFSRSLKRSPGGGRGLDSRKLPPREDLRRILSTAVD 344
Query: 358 --------FLTSFSDAESKR-------LSDDKIHLLISYVLVLTLH------------AD 390
SF D+ ++ LS + I LL + + ++LH
Sbjct: 345 SETNTTPTITDSFLDSIRRKFVPQGSFLSRNDITLLHTTICAMSLHIPPASGKTGGSNVS 404
Query: 391 DFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYAT-----------------LP 433
+ T+P D+ DLR+ + +F +LGCK+ + + +A L
Sbjct: 405 ELATDPADLRDDLRLENDTILKYFRELGCKVDKPRESEFAKWSIKGGKAEAASRRIARLK 464
Query: 434 VPLQFPKAIQRR 445
+P++FPK + R
Sbjct: 465 IPVEFPKMSRGR 476
>gi|325190897|emb|CCA25382.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 638
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 73/352 (20%), Positives = 150/352 (42%), Gaps = 35/352 (9%)
Query: 94 RVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKI 153
++Y+++N+K+ LVV+ D V Y ++ + Y +GV D+ T+ +++
Sbjct: 88 QMYQHVNKKQ------RLVVASTDK-VAYQAANFGYMSHLNDCASYVIGVFDKKTKAVRL 140
Query: 154 VPIAANKIFRLEPRVRGSD---VADKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QS 208
+ + +I+ ++ ++ S+ +D +A E + + L ++G+KKS R +S
Sbjct: 141 IDVP--QIYVMQQTIKNSNDQEESDDEAQDAAKIKEAREKQRRGLVDKFGSKKSQRIVKS 198
Query: 209 KKMHALNKENDPESQKDLALKMKSVKINKEALESTTSDTVLN--VPPYDANATTPQQAYP 266
+ + + EN Q + ++ ++ +T + LN +PP + +AT P++ Y
Sbjct: 199 RMENRVQAENVSGGQAIASTLQLKIQEAEQKAPATLNANHLNALLPPCNMDATVPEKVYS 258
Query: 267 LDKII---LKGEWDFVQDIFNHVSAGSEVISDAYPSFVCNRIHKLREIQDDVEKQTLASI 323
L KI+ + G + +V F + + + +
Sbjct: 259 LSKILDHGIIGSLRVKAREYEEARQSKDVCEMDLQRFGVFAARVFSSWNSETSSEDVKFL 318
Query: 324 -FSYITHLVKFKDQHSMDGGASAK----QHRIPKILHQKFLTSFSDAESKRLSDDKIHLL 378
F Y T L +F AS K +H I +L + L++F AE+K D L
Sbjct: 319 GFVYYTALYQFYQMKFPLRRASCKTLSEEHDISIVLMRHLLSTF--AEAKHEPDGPTTYL 376
Query: 379 ---------ISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKL 421
+ Y+L+ L +++ ++A DL+ S L +H ++GC +
Sbjct: 377 QAKTHKDKLLLYLLITGLTMNNYTLQIAEVASDLKKSPLTLANHCRQIGCHI 428
>gi|212535664|ref|XP_002147988.1| conserved hypothetical protein [Talaromyces marneffei ATCC 18224]
gi|210070387|gb|EEA24477.1| conserved hypothetical protein [Talaromyces marneffei ATCC 18224]
Length = 482
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 80/385 (20%), Positives = 149/385 (38%), Gaps = 74/385 (19%)
Query: 120 VDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAG 179
+D+VGT + +A + Q HY V ++D +T++ V + R + R +V +++
Sbjct: 99 LDFVGTEATEDADS-QLKHY-VAIVDPDQKTMQFVEVR-RMTLRSSLKARNKEVEEEETS 155
Query: 180 KGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPES-----QKDLALKMKSVK 234
E +A + KA+ D +GTK S R++ + A N P + + M S
Sbjct: 156 DYE-AAAYRDQRKALTDA-FGTKAS-RKAAQSEAENSMLAPAGASGAIESAILSSMPSQG 212
Query: 235 INKEALESTTSDTVLN----VPPYDANATTPQQAYPLDKIILKGEWDF----VQDIFNHV 286
I L++ + +P + AT P + Y L+ ++ G +Q+ + V
Sbjct: 213 IATANLKAQELQAQVQANKPIPTANLAATHPSEVYTLETLVAGGVSTLNQMPIQEWQDAV 272
Query: 287 SAGSEVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMD------ 340
+AG + S + +V +R+ + + + Q L I + I K D
Sbjct: 273 NAGEAITSTSR--YVAHRVDAVVKSTNVTHLQVLRYILALIELTKNIKRGKGSDPPGSKR 330
Query: 341 -----------GGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHA 389
G S+ Q +P + + + A + I LL + + L+LH
Sbjct: 331 VPLRADLKKVLSGGSSAQALLPDPVVEAIRRKY--APGGVMVAHNITLLYTTLCALSLHI 388
Query: 390 ------------------DDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYAT 431
+ T+P+D+ DLR+ + +F +LGC+ + + +A
Sbjct: 389 PPAPAKDGGTSSLGGNTPTELATDPSDLRDDLRLDTPTVTQYFRELGCRSEKPRETEFAK 448
Query: 432 ----------------LPVPLQFPK 440
L +PL FPK
Sbjct: 449 FGIKSKAEAANKRVCRLRLPLDFPK 473
>gi|302834096|ref|XP_002948611.1| hypothetical protein VOLCADRAFT_88884 [Volvox carteri f.
nagariensis]
gi|300266298|gb|EFJ50486.1| hypothetical protein VOLCADRAFT_88884 [Volvox carteri f.
nagariensis]
Length = 489
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 87/216 (40%), Gaps = 12/216 (5%)
Query: 67 APPLVGYFPSIYKPD-VDHPDEE-MRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVG 124
A P V Y PSI P EE + R+ N++ K+ R G + +++VG
Sbjct: 19 ALPAVCYLPSITGAGGAASPSEEPISLTKRLKFNLHAKQ-RLGSSIQLAHASLGDIEFVG 77
Query: 125 TSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEIS 184
S E Q C YA+ + L+++ +A + +FRL+ R++G A AG E
Sbjct: 78 RSDGEENKGMQHCCYALAAYRPGDKKLQLMHVAGDHLFRLDTRLQGLIYAPTGAGADEGE 137
Query: 185 AEVQANMKAM--LDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVKINKEALES 242
+ A L +G+ + RQ A D S D ++ +
Sbjct: 138 GARERRRAAARKLVDEFGSTRRRRQMTAREAGVVVADKISGGDAVQELLGNVAARGQEGG 197
Query: 243 TTSDTVL-------NVPPYDANATTPQQAYPLDKII 271
T + V VPP++ AT AYPL+ ++
Sbjct: 198 MTKEEVFRKAFAQRTVPPHNPAATNAADAYPLNLLL 233
>gi|326479981|gb|EGE03991.1| hypothetical protein TEQG_03024 [Trichophyton equinum CBS 127.97]
Length = 479
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 97/247 (39%), Gaps = 63/247 (25%)
Query: 251 VPPYDANATTPQQAYPLDKIILKGEWDF----VQDIFNHVSAGSEVISDAYPSFVCNRIH 306
+P + +AT P Y ++ ++ G VQD V+A + + + FV NR+
Sbjct: 230 LPQPNLSATQPADVYSIESLVPSGLLTLRKIPVQDWQAAVAASEGITTSSR--FVANRVE 287
Query: 307 KLREIQDDVEKQTLASIFSYITHLVKFKD--QHSMDGGASAKQHRIP------KILHQK- 357
+ D +T+ + +I L++ + S GG ++P +IL
Sbjct: 288 AAVQSGD----KTVVQLLRFILILIELSRSLKRSSGGGRGLDSRKLPPREDLRRILSTAV 343
Query: 358 ---------FLTSFSDAESKR-------LSDDKIHLLISYVLVLTLH-----------AD 390
SF D+ ++ LS + I LL + + ++LH
Sbjct: 344 DSETNTTPTITDSFLDSIRRKFVPQGSFLSRNDITLLHTTICAMSLHIPPASGKTGSNVS 403
Query: 391 DFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYAT-----------------LP 433
+ T+P D+ DLR+ + +F +LGCK+ + + +A L
Sbjct: 404 ELATDPADLRDDLRLENDTILKYFRELGCKVDKPRESEFAKWSIKGGKAEAASRRIARLK 463
Query: 434 VPLQFPK 440
VP++FPK
Sbjct: 464 VPVEFPK 470
>gi|326468539|gb|EGD92548.1| hypothetical protein TESG_00121 [Trichophyton tonsurans CBS 112818]
Length = 479
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 97/247 (39%), Gaps = 63/247 (25%)
Query: 251 VPPYDANATTPQQAYPLDKIILKGEWDF----VQDIFNHVSAGSEVISDAYPSFVCNRIH 306
+P + +AT P Y ++ ++ G VQD V+A + + + FV NR+
Sbjct: 230 LPQPNLSATQPADVYSIESLVPSGLLTLRKIPVQDWQAAVAASEGITTSSR--FVANRVE 287
Query: 307 KLREIQDDVEKQTLASIFSYITHLVKFKD--QHSMDGGASAKQHRIP------KILHQK- 357
+ D +T+ + +I L++ + S GG ++P +IL
Sbjct: 288 AAVQSGD----KTVVQLLRFILILIELSRSLKRSSGGGRGLDSRKLPPREDLRRILSTAV 343
Query: 358 ---------FLTSFSDAESKR-------LSDDKIHLLISYVLVLTLH-----------AD 390
SF D+ ++ LS + I LL + + ++LH
Sbjct: 344 DSETNTTPTITDSFLDSIRRKFVPQGTFLSRNDITLLHTTICAMSLHIPPASGKTGSNVS 403
Query: 391 DFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYAT-----------------LP 433
+ T+P D+ DLR+ + +F +LGCK+ + + +A L
Sbjct: 404 ELATDPADLRDDLRLENDTILKYFRELGCKVDKPRESEFAKWSIKGGKAEAASRRIARLK 463
Query: 434 VPLQFPK 440
VP++FPK
Sbjct: 464 VPVEFPK 470
>gi|302411001|ref|XP_003003334.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261358358|gb|EEY20786.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 450
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 20/162 (12%)
Query: 295 DAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKIL 354
D +V RI ++ + + +EK I Y+ L+ F + DG + PK
Sbjct: 284 DLASRYVARRIGRVGKQEKPLEK---LRIMRYLYFLILFY-VTAKDGRQRGTKRVPPKDQ 339
Query: 355 HQKFLT----SFSDAESKRLSDD----KIH--LLISYVLVLTLHADDFRTNPTDIAKDLR 404
K L+ S D+ ++ SD K H L++++ L+ D+F T P D+ +DLR
Sbjct: 340 LAKNLSPAPQSVIDSIRRKFSDGGEIRKFHMDLIMTHCAALSCIIDNFETEPRDLREDLR 399
Query: 405 MSEFKLRDHFEKLGCKLLREKNML------YATLPVPLQFPK 440
+ + +F+++G K+ + K A L +PL FPK
Sbjct: 400 LDSKTMNQYFQEIGAKIGQRKAAGEAKAQPVAKLAMPLVFPK 441
>gi|260943792|ref|XP_002616194.1| hypothetical protein CLUG_03435 [Clavispora lusitaniae ATCC 42720]
gi|238849843|gb|EEQ39307.1| hypothetical protein CLUG_03435 [Clavispora lusitaniae ATCC 42720]
Length = 408
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 161/383 (42%), Gaps = 71/383 (18%)
Query: 111 LVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKI--VPIAANKIFRLEPRV 168
+V +S+++Y G A C YAV + D + +++++ P+ ++ L+ RV
Sbjct: 50 FLVHGENSTLEYNGVD------ADDACDYAVALYDPAHKSVELFPAPMVHGRVTSLDARV 103
Query: 169 -RGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKEN--DPESQKD 225
+G + + A A VQ + L +GTKK+ K A ++ N D + +D
Sbjct: 104 HKGPKIKSRGA-----RAAVQ---RTALGEAFGTKKA----KAAIASSERNRIDADKLQD 151
Query: 226 LAL-------KMKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDF 278
+ L ++ S ++E L+ S +V PP + +AT+ + Y L II K EW
Sbjct: 152 MELDIVDNVKELTSDLPSREQLQDV-SVSVRPTPPANVDATSVEDIYALHSIIPKKEWAS 210
Query: 279 --VQDIFNHVSAGS--EVISDAYPSFVCNRIHKLREIQDDVEKQTL--ASIFSYITHLVK 332
VQ IF+ SA E++ +FV + K + + + Q L A++ I H +
Sbjct: 211 IRVQAIFDEESAEKRMEMMPFGSSAFVAKNLPKYVSLHNTEKVQMLYYAALLFGIYHHRR 270
Query: 333 FKDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIHLLISYVL--------- 383
+D+ S+ +++ ++L L F+ A + + K S+V+
Sbjct: 271 VRDKTSL---MERLENKPSELLVDGVLGRFAVARTTAVGKSKDR---SFVIDPFHEDKLL 324
Query: 384 ----VLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCK-------------LLREKN 426
L H + F +A +L M +L F LG L +++
Sbjct: 325 CYLLALLFHIEGFTLEVLPLANELNMKPTRLVGLFRALGATIKPVGVGMAEAIGLSKKEA 384
Query: 427 MLY--ATLPVPLQFPKAIQRRRR 447
Y A L VP + P+ +++ R
Sbjct: 385 STYKVAVLRVPFKLPEMVRKGAR 407
>gi|452821719|gb|EME28746.1| DNA-directed RNA polymerase I subunit A49 isoform 2 [Galdieria
sulphuraria]
Length = 365
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 130/311 (41%), Gaps = 45/311 (14%)
Query: 107 GRMELVVSPRDSSVDYVGTSYSGEAMAPQ-FCHYAVGVLDRSTQTLKIVPIAANKIFRLE 165
GR LV++ D++ Y EA++ F Y +GV R T I I +I L
Sbjct: 39 GRGSLVLA--DNNSGYSMPVSVKEAVSQHCFARYFIGVKKRGENT--IYCIEPQQIVHLY 94
Query: 166 PRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTK--KSLRQSKKMHALNK-ENDPES 222
P +R + +D E S + +K L ++G+K K R + +A+N+ E D E
Sbjct: 95 PAIRQTQ---RDYS--ETSQLSKGELKTQLIAKFGSKATKKRRDAVLRNAVNELEVDKEE 149
Query: 223 QKDLALKMKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEW------ 276
K + + V+ + +LE L PP + T +AYPL IIL EW
Sbjct: 150 FKAVESSISQVRTSS-SLEDALHSIAL--PPMNKETTVLSEAYPLQAIILPREWKEMESS 206
Query: 277 ----DFVQDIFNHVSAGSEVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVK 332
D + D+ + + V P + N +R Q +Q L ++ +L K
Sbjct: 207 VGILDSLMDM-DALKKNDMVDMWGVPEPLANDFF-MR--QGSKGQQELICCL-FLKYLCK 261
Query: 333 F----KDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKR-------LSDDKIHLLISY 381
F K + A+ IP +L ++FL F++ ++KR L DK LI
Sbjct: 262 FHTFPKTLKQKQVASWAEDSGIPNVLLERFLADFAEYDTKRRTYFRSPLYMDK---LIYS 318
Query: 382 VLVLTLHADDF 392
LV+ + D F
Sbjct: 319 ALVVIVRNDSF 329
>gi|302510441|ref|XP_003017172.1| hypothetical protein ARB_04049 [Arthroderma benhamiae CBS 112371]
gi|291180743|gb|EFE36527.1| hypothetical protein ARB_04049 [Arthroderma benhamiae CBS 112371]
Length = 501
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 101/255 (39%), Gaps = 68/255 (26%)
Query: 251 VPPYDANATTPQQAYPLDKIILKGEWDF----VQDIFNHVSAGSEVISDAYPSFVCNRIH 306
+P + +AT P Y ++ ++ G VQD + A SE I+ + FV NR+
Sbjct: 251 LPQPNLSATQPADVYSIESLVPSGLLTLRKIPVQD-WQAAVAASEGITTSS-RFVANRVE 308
Query: 307 KLREIQDDVEKQTLASIFSYITHLVKFKD--QHSMDGGASAKQHRIPK---ILHQKFLTS 361
+ D +T+ + +I L++F + S GG ++P + H L++
Sbjct: 309 AAVQSGD----KTVVQLLRFILILIEFSRSLKRSPGGGRGLDSRKLPPREDLRH--ILST 362
Query: 362 FSDAESKR----------------------LSDDKIHLLISYVLVLTLH----------- 388
D+E+ LS + I LL + + ++LH
Sbjct: 363 AVDSETNTTPTITDSFLDSIRRKFVPQGSFLSRNDITLLHTTICAMSLHIPPASGKTGGS 422
Query: 389 -ADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYAT---------------- 431
+ T+P D+ DLR+ + +F +LGCK+ + + +A
Sbjct: 423 NVSELATDPADLRDDLRLENDTILKYFRELGCKVDKPRESEFAKWSIKGGKAEAASRRIA 482
Query: 432 -LPVPLQFPKAIQRR 445
L +P++FPK + R
Sbjct: 483 RLKIPVEFPKMSRGR 497
>gi|156848087|ref|XP_001646926.1| hypothetical protein Kpol_2000p33 [Vanderwaltozyma polyspora DSM
70294]
gi|156117608|gb|EDO19068.1| hypothetical protein Kpol_2000p33 [Vanderwaltozyma polyspora DSM
70294]
Length = 409
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 88/387 (22%), Positives = 163/387 (42%), Gaps = 57/387 (14%)
Query: 99 MNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKI--VPI 156
+ +KKN G E VV +S ++Y G++ ++ A Y VGV D S + +K+ P+
Sbjct: 37 LYKKKNSDG--EFVVHGENSRLEYEGST---DSTASDSVQYVVGVYDPSKKNIKLYKAPL 91
Query: 157 AANKIFRLEPRVRGSDVADKDAGKGEISAEVQAN-MKAMLDTRYGTKKSLRQSKKMHALN 215
K+ S + K G S E + + ++ L +GTKK+ + +
Sbjct: 92 VQCKVI--------SKSSKKLKGPKIKSNETRMSILRNALGEAFGTKKAKKAIMDLEKNR 143
Query: 216 KENDP--ESQKDLALKMKSVKINKEALESTTS--DTVLN---VPPYDANATTPQQAYPLD 268
+ D ES D+ + SVK + L S + V N P + AT ++ YP++
Sbjct: 144 VDADKLVESAIDI---VDSVKAASKDLPSKADLDEMVSNDRPTPLANVEATDVEEIYPIN 200
Query: 269 KIILKGEWDFVQDIFNHVSAGSEVISDAYP----SFVCNRIHKLREIQDDVEKQTLASIF 324
II K EW F++ E + +P ++ ++ L + +++ K L
Sbjct: 201 NIIPKREWQFIRVGPIIKEEDQEQKLEMFPYTKSQYISKKLSTLSQ-SNNMTKLQLLYYL 259
Query: 325 SYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRL--SDDKIHL----- 377
S + + + ++ D K + P+IL L F+ + + S D+ +
Sbjct: 260 SLLLGVYDNRRANNKDK-LLEKLNSPPEILIDGVLDRFTISRPGQFGKSKDRSYFIDPQN 318
Query: 378 ---LISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGC-------------KL 421
L+ ++L + LH D+F + +A++L + K+ F LGC +
Sbjct: 319 EDRLLCFILTIILHLDNFIVEISPLAQELGLKPSKVVSLFRILGCIVKGATVSQAEAFGI 378
Query: 422 LREKNMLY--ATLPVPLQFPKAIQRRR 446
+ Y A+L VP + P+ ++R R
Sbjct: 379 PKSAASTYKIASLKVPFKLPEMVRRGR 405
>gi|315048255|ref|XP_003173502.1| hypothetical protein MGYG_03677 [Arthroderma gypseum CBS 118893]
gi|311341469|gb|EFR00672.1| hypothetical protein MGYG_03677 [Arthroderma gypseum CBS 118893]
Length = 480
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 51/253 (20%), Positives = 101/253 (39%), Gaps = 64/253 (25%)
Query: 251 VPPYDANATTPQQAYPLDKIILKGEWDF----VQDIFNHVSAGSEVISDAYPSFVCNRIH 306
+P + +AT P + Y ++ ++ G V+D V+A + + + FV NR+
Sbjct: 230 LPQPNLSATQPAEVYSIESLVPNGLPTLRKVPVKDWQAAVAASEGITTSSR--FVANRVE 287
Query: 307 KLREIQDDVEKQTLASIFSYITHLVKFKD--QHSMDGGASAKQHRIP-KILHQKFLTSFS 363
+ D +TL + +I L++ + S GG ++P + ++ L++
Sbjct: 288 AAVQSGD----KTLVQLLRFILILIELSRSLKRSSGGGRGPDSKKLPPREDLRRILSTAV 343
Query: 364 DAESKR----------------------LSDDKIHLLISYVLVLTLH------------A 389
D+E+ LS + I LL + + ++LH
Sbjct: 344 DSETSTTPTITDPFLDTIRRKFVPQGSFLSRNDITLLHTTICAMSLHIPPASGKMGGSNV 403
Query: 390 DDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYAT-----------------L 432
+ T+P D+ DLR+ + +F +LGCK+ + + +A L
Sbjct: 404 SELATDPADLRDDLRLENDTILKYFRELGCKVDKPRETEFAKWSIKNGKAEAASKRIARL 463
Query: 433 PVPLQFPKAIQRR 445
+P++FPK + R
Sbjct: 464 KIPVEFPKVSRGR 476
>gi|255716130|ref|XP_002554346.1| KLTH0F03102p [Lachancea thermotolerans]
gi|238935729|emb|CAR23909.1| KLTH0F03102p [Lachancea thermotolerans CBS 6340]
Length = 412
Score = 44.7 bits (104), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 62/306 (20%), Positives = 127/306 (41%), Gaps = 37/306 (12%)
Query: 138 HYAVGVLDRSTQTLKI--VPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKA-- 193
Y VG+ D S +++++ P+ A K+ + + KD EI Q N++A
Sbjct: 74 QYVVGIYDPSKRSVQLYKAPVIATKV---------ASKSKKDLSGPEIK---QNNLRASA 121
Query: 194 ---MLDTRYGTKKSLRQSKKM--HALNKENDPESQKDLALKMKSVKIN---KEALESTTS 245
L +GTKK+ + + + ++ + E+ D+ +K+ + ++ L+ +S
Sbjct: 122 LRNALGEAFGTKKAKKAIADIERNRIDSDKLVEAAVDIVDSVKTASKDLPTRQELQQVSS 181
Query: 246 DTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDAYPSFVCNRI 305
P + +AT +Q YP+ II K EW F++ + + +P +
Sbjct: 182 QD-RTTPQANVDATDVEQIYPIHNIIPKKEWQFIRVGPVLKETDDQKRLELFPFTKSQYV 240
Query: 306 HKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQH--RIPKILHQKFLTSFS 363
K + T + Y++ L+ + + A +H P++L L F+
Sbjct: 241 SKKLPTLTQAAQMTKLQLLYYVSLLLGVYENRRVSDKAKLLEHLNAPPEVLVDGILDRFT 300
Query: 364 ---DAESKRLSDDKIHL-------LISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDH 413
+ R + + L+ Y+L + LH D+F + +A++L + K+ +
Sbjct: 301 IVRPGQYGRSKERGFFIDPQREDKLLCYILAIILHLDNFIVEISPLAQELGLKPSKIVNL 360
Query: 414 FEKLGC 419
F+ LG
Sbjct: 361 FKNLGA 366
>gi|310789527|gb|EFQ25060.1| A49-like RNA polymerase I associated factor [Glomerella graminicola
M1.001]
Length = 440
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 150/357 (42%), Gaps = 52/357 (14%)
Query: 119 SVDYV----GTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVA 174
++DY G S S +A+ HY VG+ D +T L++V A + R R + A
Sbjct: 92 TMDYTAREDGISDSQQALK----HY-VGIYDPNTGALQVVE-AKKMVVRGVARAKH---A 142
Query: 175 DKDAGKGEISAEVQANMKAMLDTRYGTKKSLR--QSKKMHAL--NKENDPESQK-DLALK 229
++A + + + K L +GTKK+ + +S ++A+ NK D +K D A K
Sbjct: 143 SEEAMRAPADNQSYYDQKKDLGQTFGTKKAKKAIESVALNAIDPNKSRDSAPKKLDAASK 202
Query: 230 -----MKSVKIN---KEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFV-- 279
+ V N +E L++ D VP + A Q Y D+ I + V
Sbjct: 203 AIMQEIGGVTANMTSREQLQAAV-DKAKPVPRPNLEAEAIQDVYDPDEFIGREVLAAVPI 261
Query: 280 QDIFNHVSAGSEVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSM 339
+D +G EV+ Y V R+ K+ + V K L F ++
Sbjct: 262 KDWVEPTKSGEEVL--CYSRHVAARVKKVAD-SGSVSKMRLLRYFYFLFTFYTMATPGKQ 318
Query: 340 DGGASAK-----QHRI---PKILHQKFLTSFSDAESKRLSDDKIHL--LISYVLVLTLHA 389
G + R+ P+++ + FSD R K H+ LI++ L
Sbjct: 319 RGTKRIPPRDKLKERLSPAPQVVIEHIRRKFSDGGEMR----KFHMDMLITHCCALACII 374
Query: 390 DDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLR------EKNMLYATLPVPLQFPK 440
D+F + + + +D+R+ + ++ ++F ++G K+ + K A L +PL FPK
Sbjct: 375 DNFEVDTSLLRQDMRLDQKEMNNYFYEIGAKVKQVATKEPGKAAHVAKLALPLNFPK 431
>gi|346321256|gb|EGX90856.1| RNA polymerase I associated factor [Cordyceps militaris CM01]
Length = 441
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 138/346 (39%), Gaps = 63/346 (18%)
Query: 136 FCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAML 195
H+ +G+ D T ++++ A + R R + A DA + + + + ++K L
Sbjct: 109 LLHHFLGIYDPKTGEMELIE-AKKMVMRASVRAKQ---APADALEEKGAKQSMMDLKTDL 164
Query: 196 DTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVK------INKEALESTTSDTVL 249
+GTKK+ R+ LN + + D+ KM + K A + T + +
Sbjct: 165 GQTFGTKKA-RKVINERVLNAISPQKKDGDMVAKMDDASRAMLDSVGKVAADMATREQLQ 223
Query: 250 NV-------PPYDANATTPQQAYPLDKIILKG----------EWDFVQDIFNHVSAGSEV 292
V PP + +A Q AY D ++ G EW Q+ H G +
Sbjct: 224 AVVSEAKPLPPVNVDAEDIQDAY--DPSVIIGTDILNMLPIREW---QEQVRH-KEGVQT 277
Query: 293 ISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKF--KDQHSMDGGASAKQHR- 349
+S FV R++ + +D + L + Y++ +V F + G + R
Sbjct: 278 VS----KFVATRVNAI--ASNDAAEIRL-RVLRYMSFVVCFYLNTKPGRQKGTRSVPPRD 330
Query: 350 --------IPKILHQKFLTSFSDAESKRLSDDKIH--LLISYVLVLTLHADDFRTNPTDI 399
P+ + + FSDA R K H LLI+++ AD+F + D+
Sbjct: 331 KLREALAPAPEAVIENIRRKFSDAGEMR----KFHVDLLITHLCAFACIADNFEVDTQDL 386
Query: 400 AKDLRMSEFKLRDHFEKLGCKL-----LREKNMLYATLPVPLQFPK 440
DLR + + +F ++G ++ + A L +PL FPK
Sbjct: 387 RYDLRTDDKAMNQYFREIGARIKPTSKKGQGPTTIARLVLPLDFPK 432
>gi|339239117|ref|XP_003381113.1| hypothetical protein Tsp_07652 [Trichinella spiralis]
gi|316975887|gb|EFV59271.1| hypothetical protein Tsp_07652 [Trichinella spiralis]
Length = 382
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 101/234 (43%), Gaps = 50/234 (21%)
Query: 242 STTSDTVLN-------VPPYDANATTPQQAYPLDKII----LKGEWDFVQDIFNHVSAGS 290
ST D+ LN +PP + AT PQ+ Y L II L+ +F++ FN +
Sbjct: 141 STQDDSELNNDGFSVVLPPANLKATCPQEIYNLHDIITAERLEKMDEFLESFFNIPNKEK 200
Query: 291 EVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHS---------MDG 341
+ I +FV I + QD ++++ L Y++ L + +S M+
Sbjct: 201 QAIGCG--NFV---IMLAEKCQDPIQRRCLF----YLSCLFRLAWLYSSKRVVMVEDMEK 251
Query: 342 GASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIHL-------LISYVLVLTLHADDFRT 394
A +P + K L + ++ R + +K+ L LI+++++L+L ++F
Sbjct: 252 AA------LPFSIGSKLLQVYGRSKG-RFNKEKLSLSTASRDALIAHIVLLSLALNNFSV 304
Query: 395 NPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYATLPVP-------LQFPKA 441
D+ + +S ++R LGC +++ + L P LQF KA
Sbjct: 305 PIQDLCTNATLSNSRVRSISRALGCNVIKSNDQQLIVLRQPPKSQSSTLQFEKA 358
>gi|406861831|gb|EKD14884.1| A49-like RNA polymerase I associated factor [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 448
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 97/452 (21%), Positives = 170/452 (37%), Gaps = 88/452 (19%)
Query: 51 ERVKAKVQFIPEQPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRME 110
E+VK +VQ + K P++ P + P H ++P + N + +GR+
Sbjct: 28 EKVK-QVQVTVSEVGKWAPIIASTPGLAAPAAVH----LKPYTKARCNPATRSGLSGRIA 82
Query: 111 ----LVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEP 166
L+ S DY HY VG+ D T +++V A + R
Sbjct: 83 TEELLLHSSEHPKFDYTAIEEEAGGKDAPLKHY-VGIYDPETGKMEVVE-ARKMVVRSSV 140
Query: 167 RVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDL 226
R + V D + + E + N L +GTKK+ +K A N EN K
Sbjct: 141 RAEQATVEDHEISRSMDKTENRNN----LGQTFGTKKA----RKAIAANTENAISPDKSA 192
Query: 227 ALK-MKSVKINKE--ALESTTSDTVLNV----------------PPYDANATTPQQAYPL 267
K K KIN A+ ++ +D ++ P + A + Y +
Sbjct: 193 RSKDNKPAKINAATAAILASMADGANSMTSREELAQQVEDSKPRPKANKEAQAVEDVYTV 252
Query: 268 DKIILKGEWDFVQDIFNHV---------SAGSEVISDAYPSFVCNRIHKLREIQDDVEKQ 318
D +I K D+F V A E+ + +V +RI K + VEK
Sbjct: 253 DSLIGK-------DVFGAVPVRTWQADIKANKEI--ECPSRYVASRIMK---VSAHVEK- 299
Query: 319 TLASIFSYITHLVKFKDQHSMDGGASAKQHR---------IPKILHQKFLTSFSDAESKR 369
I Y+ +++ + ++ G R IP+ + + F A+
Sbjct: 300 --LRILRYMVLMLEVLNSCRINRGQRTLPKRDELKKLLGDIPEAVLEGMKRKF--AQGDL 355
Query: 370 LSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLL------R 423
++ L+I+++ L D + + + +DL++ ++ +F ++G K+ R
Sbjct: 356 ITKFGADLMITHMCALACIVDGYEVDMFKLQEDLKLETKEMSQYFREIGAKVGALGEVER 415
Query: 424 EKNML---------YATLPVPLQFPKAIQRRR 446
+K L A L +PL+FPK RR
Sbjct: 416 KKQGLDKAAASQRKVAKLRLPLEFPKVSSGRR 447
>gi|339239137|ref|XP_003381123.1| hypothetical protein Tsp_07662 [Trichinella spiralis]
gi|316975872|gb|EFV59261.1| hypothetical protein Tsp_07662 [Trichinella spiralis]
Length = 382
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 100/228 (43%), Gaps = 38/228 (16%)
Query: 242 STTSDTVLN-------VPPYDANATTPQQAYPLDKII----LKGEWDFVQDIFNHVSAGS 290
ST D+ LN +PP + AT PQ+ Y L II L+ +F++ FN +
Sbjct: 141 STQDDSELNNDGFSVVLPPANLKATCPQEIYNLHDIITAERLEKMDEFLESFFNIPNKEK 200
Query: 291 EVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASA---KQ 347
+ I +FV I + QD ++++ L Y++ L + +S ++
Sbjct: 201 QAIGCG--NFV---IMLAEKCQDPIQRRCLF----YLSCLFRLAWLYSSKRVVMVEDMEK 251
Query: 348 HRIPKILHQKFLTSFSDAESKRLSDDKIHL-------LISYVLVLTLHADDFRTNPTDIA 400
+P + K L + ++ R + +K+ L LI+++++L+L ++F D+
Sbjct: 252 AALPFSIGSKLLQVYGRSKG-RFNKEKLSLSTASRDALIAHIVLLSLALNNFSVPIQDLC 310
Query: 401 KDLRMSEFKLRDHFEKLGCKLLREKNMLYATLPVP-------LQFPKA 441
+ +S ++R LGC +++ + L P LQF KA
Sbjct: 311 TNATLSNSRVRSISRALGCNVIKSNDQQLIVLRQPPKSQSSTLQFEKA 358
>gi|406606398|emb|CCH42172.1| DNA-directed RNA polymerase I subunit RPA49 [Wickerhamomyces
ciferrii]
Length = 414
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 80/364 (21%), Positives = 150/364 (41%), Gaps = 60/364 (16%)
Query: 127 YSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAE 186
YSG + YAV V D P++ + P + GS V+ K K + A
Sbjct: 67 YSGATLEEDSSGYAVAVYD---------PVSKSVDLYQAPVLLGS-VSSKAHRKLKGPAV 116
Query: 187 VQANMKA-----MLDTRYGTKKSLRQSKKM--HALNKENDPESQKDLALKMKSVKINKEA 239
Q N++ L +GTKK+ + + + ++ + + + D+ + +VK + +
Sbjct: 117 KQNNVRMNIQRNALGEAFGTKKAKKAISDLERNRIDSDKLADVEADI---VDTVKASTTS 173
Query: 240 LES--TTSDTVLN---VPPYDANATTPQQAYPLDKIILKGEWDFVQ--DIFNH--VSAGS 290
L + ++TVLN P D +AT + YP+ II K E F++ I N +
Sbjct: 174 LPTRDQLTETVLNDRPTPACDVDATNVEDIYPVYNIIPKRELTFIRVGSILNEEDIKKKV 233
Query: 291 EVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDG--GASAKQH 348
E++ ++ + +L I ++ + Q L I+ Y + L+ + S +
Sbjct: 234 ELLPYQNSPYITS---QLSSINNESQTQKLQLIY-YASLLIGVYQNRRISNKENLSTALN 289
Query: 349 RIPKILHQKFLTSFSDAESKRL--SDDKIHL--------LISYVLVLTLHADDFRTNPTD 398
P +L L F+ + S D+ + L+ Y+L LH ++F +
Sbjct: 290 TPPDLLIDGILERFTILRPGQFGRSKDRGYTIDPHHEDKLLCYLLATILHINNFIVEISP 349
Query: 399 IAKDLRMSEFKLRDHFEKLGCKL----LREKNML-----------YATLPVPLQFPKAIQ 443
+A++L + +L F+ LGC + + E A+L VP + P+ +
Sbjct: 350 LAQELSLKPSRLVGLFKALGCIVKSATVAEAEAFGIPKSIAASYKIASLKVPFKLPQMTR 409
Query: 444 RRRR 447
R R+
Sbjct: 410 RGRK 413
>gi|255723868|ref|XP_002546863.1| DNA-directed RNA polymerase I 49 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240134754|gb|EER34308.1| DNA-directed RNA polymerase I 49 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 392
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 93/376 (24%), Positives = 167/376 (44%), Gaps = 60/376 (15%)
Query: 108 RMELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKI--VPIAANKIFRLE 165
R + V+ ++DY G S S Y V V D T+++++ P + K+
Sbjct: 40 RDDFVLHGETETLDYNGESSSSN-------EYVVAVYDPETKSVELFKTPYMSTKVTAKR 92
Query: 166 PRV-RGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKEN-DPESQ 223
R+ +G + K AG + +Q N L +GTKK+ +H L K D E
Sbjct: 93 NRIYKGPKI--KSAGLRNV---IQRN---ALGEAFGTKKA---KAAIHNLEKNRIDSEKL 141
Query: 224 KDLALKM-KSVKINKEALESTTSDTVLNVPPYDAN--ATTPQQAYPLDKIILKGEWDFVQ 280
+D L + +VK N A S+T + ++ P AN AT + YP+ II + EW +++
Sbjct: 142 QDFELDIVDTVKENTVA--SSTKEESVDRPTPLANVDATNVEDIYPIKNIIPEKEWQYLR 199
Query: 281 DIFNHVSAGS--EVISDAYPSFVCNRIHKLREIQDDVEKQTL--ASIFSYITHLVKFKDQ 336
+ + ++A E++ F+ ++ L E ++ + Q L ASI + + KD+
Sbjct: 200 -VGSLLTAEDPLELLPFTKSEFIKKQLPILIEQKNTEKLQMLFYASILFGVYDKRRSKDK 258
Query: 337 HSMDGGASAKQHRIPKILHQKFLTSFSDAESKRL--SDDKIHLL--------ISYVLVLT 386
++ G Q++ ++L L F+ + + + S DK + ++Y+ +L
Sbjct: 259 QTLLTGL---QNKASEVLIDGILERFAISRASQFGKSKDKSFFIDPHHEDKLLTYLFILL 315
Query: 387 LHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKL----LREKNML-----------YAT 431
LH ++F ++KDL++ KL F LG + + E L AT
Sbjct: 316 LHINNFAVELVPLSKDLKLKNTKLVALFRALGAIIKSATVGEAEALGIPKSAAGTYKIAT 375
Query: 432 LPVPLQFPKAIQRRRR 447
L VP + P+ +R +R
Sbjct: 376 LKVPFKLPELTRRGKR 391
>gi|90086049|dbj|BAE91577.1| unnamed protein product [Macaca fascicularis]
Length = 426
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 59/286 (20%), Positives = 135/286 (47%), Gaps = 36/286 (12%)
Query: 92 KVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQT 150
+ +Y N + R R + +++ + YVG ++ A+ C + VG+L++++
Sbjct: 40 RFTLYENKDSTNPRK-RNQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQ 98
Query: 151 LKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQAN-----MKAMLDTRYGTKKSL 205
+++ ++F ++P SDV+ + E++ + Q M + ++ +GT K
Sbjct: 99 MEVYDA---ELFNMQPLF--SDVS----VESELALDSQTKTYREKMDSCIEA-FGTTKQK 148
Query: 206 R--QSKKMHALNKENDPESQKDLALKMKSVK----INKEALESTTSDTVLNVPPYDANAT 259
R +++M+ + E+ ++ A + K + +A+ + D L +PP +AT
Sbjct: 149 RALNARRMNRVGNESLNQAVAKAAETIIDTKGVTALVSDAIHNDLQDDSLYLPPCYDDAT 208
Query: 260 TPQQAYPLDKIILKGEWDFVQ---DIFNHVSAGSEVI----SDAYPSFVCNRIHKLREIQ 312
P+ Y + ++ E++ +Q + F +V++ E++ +++ +FV I L+ +
Sbjct: 209 KPEDVYKFEDLLSPAEYEALQSPSEAFRNVTS-EEILKMIEENSHCTFV---IEALKSLP 264
Query: 313 DDVE-KQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQK 357
DVE + A ++ L+KF+ Q + SA +P I++ K
Sbjct: 265 SDVESRDRQARCIWFLDTLIKFRAQRVVK-RKSALGPGVPHIINTK 309
>gi|46122345|ref|XP_385726.1| hypothetical protein FG05550.1 [Gibberella zeae PH-1]
Length = 439
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 81/360 (22%), Positives = 145/360 (40%), Gaps = 57/360 (15%)
Query: 119 SVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDA 178
++DY + + P H+ +G+ D T L++V K + VR A A
Sbjct: 90 TMDYTVKADGARGVKPALNHF-LGIYDPKTGKLEVV---EAKKMTMRAAVRAKQSAAAAA 145
Query: 179 GKGEISAEVQANMKAMLDTRYGTKKSLR--QSKKMHAL---NKENDPESQKDLALK---- 229
G+ + S + +K L +GTKK+ + Q ++A+ K + ++ D A +
Sbjct: 146 GERDAS-QTMMQLKTDLGQTFGTKKAKKAIQENVLNAIAPQKKTGEAPTKIDAAARAMLS 204
Query: 230 ----MKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKII----LK----GEWD 277
+ S ++E L++ D VP + AT Q Y +II LK EW
Sbjct: 205 SVGEVTSTMASREELQAVV-DEARPVPIPNLEATEIQDVYDPKRIIGADILKLVPVREW- 262
Query: 278 FVQDIFNHVSAGSEVISDAYPS-FVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQ 336
Q+ H S PS FV R+ ++ +D ++ + F ++
Sbjct: 263 --QEKVQHKE------SIQVPSRFVAARVTRVAGNEDATDRLRVLRYFFFVLLFY----L 310
Query: 337 HSMDGGASAKQHRIPKILHQKFLTSFSDA----------ESKRLSDDKIHLLISYVLVLT 386
HS G A + P+ ++FL +A E + I LLI++ V
Sbjct: 311 HSKPGKARGTRSIPPRDKLREFLAPAPEAVVESIRRKFSERGEMRKFHIDLLITHCCVFA 370
Query: 387 LHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKN------MLYATLPVPLQFPK 440
D+F + ++ DL++ + + +F ++G ++ N + A L +PL FPK
Sbjct: 371 SIIDNFEVDTQNLRDDLKIDQKTMNSYFHEIGGRVKPVTNKETKTTVSLARLALPLNFPK 430
>gi|320582225|gb|EFW96443.1| RNA polymerase I alpha subunit [Ogataea parapolymorpha DL-1]
Length = 398
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 86/356 (24%), Positives = 155/356 (43%), Gaps = 56/356 (15%)
Query: 127 YSGEAMAPQFCHYAVGVLDRSTQTLKIV--PIAANKIF---RLE-PRVRGSDVADKDAGK 180
Y GE++ +Y VGV D +T++++ P+ + ++ +L P +R DV
Sbjct: 56 YKGESIGDDQTYY-VGVFDPQKKTVELLRAPLLSTRVTSKRKLSIPNIRQLDV------- 107
Query: 181 GEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVKINKEAL 240
VQ N L +GTKK+ + + NK + + + + + + S+K+N L
Sbjct: 108 ---QRNVQRNA---LGEAFGTKKAKKAILDLEK-NKIDASKLETEQSDIIDSIKVNTSML 160
Query: 241 ESTTSDTV--LN----VPPYDANATTPQQAYPLDKIILKGEWDFVQ-DIFNHVSAGSEVI 293
S S+ + LN P +D +AT+ YPL+ II K E ++ D + S ++
Sbjct: 161 PSK-SEMLDDLNEHRVTPQFDVDATSVDDIYPLENIISKRELASIRVDSLQNDSIQAKDK 219
Query: 294 SDAYPSFVCNR--IHKLREIQDDVEKQTL-ASIFSYITHLVKF---KDQHSMDGGASAKQ 347
D P + +R + KL I D + L + Y++ L+ + H+ D +
Sbjct: 220 LDLLP-YSNSRYLLRKLSSITKDTPDRKLKLQMLYYVSLLMGLYANRRVHAKDQLIES-L 277
Query: 348 HRIPKILHQKFLTSFSDAESKR---LSDDKIH-LLISYVLVLTLHADDFRTNPTDIAKDL 403
++ P +L L +FS + L D K ++ Y+L L L D+++ + +A++L
Sbjct: 278 NQPPVVLVDYVLKNFSILKKNNRNYLIDPKCEDKILCYLLALILKLDEYQVEVSPLAQEL 337
Query: 404 RMSEFKLRDHFEKLGCKL---------------LREKNMLYATLPVPLQFPKAIQR 444
+ +L F LGC + N ATL VP + P+ +R
Sbjct: 338 SLKPSRLTSLFRSLGCVIKNATAAQCEAFGVPKTASNNYKIATLRVPFKAPELARR 393
>gi|340380083|ref|XP_003388553.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49-like
[Amphimedon queenslandica]
Length = 318
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 34/225 (15%)
Query: 251 VPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVS------AGSEVISDAYPSFVCNR 304
+P + +A TP + Y L+ +I E ++ + AG+ V + F+
Sbjct: 99 LPVCNTDAATPDEVYLLNDLISTEEMKLLKSTATSLIEGKTTLAGTLVKEEERSQFLLTN 158
Query: 305 IHKLREIQDDVEKQTLASIFSYITHLVKF--KDQHSMDGGASAKQHRIPKILHQKFLTSF 362
V L S+ Y +L+ ++ K IP +H L F
Sbjct: 159 FSMAS--SSTVRPVELVSMLLYCDYLITLYKSSPKTVQQFGLQKCSSIPHFMHSSLLDKF 216
Query: 363 SDAE--------------SKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEF 408
++ S ++ D ++SY+ + L + N + + KDL++S
Sbjct: 217 TEGGGGGRAGAKGAQCSFSSKMKDK----VMSYLFAIALRFSGYTLNSSVLQKDLQISSN 272
Query: 409 KLRDHFEKLGCKLLREKNMLYA------TLPVPLQFPKAIQRRRR 447
K+ F LGC + +K++ TL VP FP + +++R+
Sbjct: 273 KVMSMFRVLGCSVSLDKSVSSGLKQYNITLKVPPVFPTSNRKKRK 317
>gi|358381109|gb|EHK18785.1| hypothetical protein TRIVIDRAFT_216634 [Trichoderma virens Gv29-8]
Length = 285
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 351 PKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKL 410
P+ + + FSDA +L I LLI++ L D+F + ++ DLR+ + +
Sbjct: 184 PEAVIENIRRKFSDA--GQLRKFHIDLLIAHCCALACIVDNFEVDTQNLRDDLRIEQKMM 241
Query: 411 RDHFEKLGCKL-----LREKNMLY-ATLPVPLQFPKAIQRRRR 447
+F ++G ++ E ML+ A L +PL FPK Q R R
Sbjct: 242 NQYFHEIGARVKPVKDKAEDRMLHIAKLALPLDFPKQRQMRAR 284
>gi|408394315|gb|EKJ73523.1| hypothetical protein FPSE_06141 [Fusarium pseudograminearum CS3096]
Length = 439
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 93/416 (22%), Positives = 166/416 (39%), Gaps = 58/416 (13%)
Query: 63 QPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDY 122
+P PP++ P D P PK + K+ + L+ S ++DY
Sbjct: 35 RPKHCPPVIATAVGFDVPK-DIPFHSYAPKDAAKSKAKQTKSAGEKDFLLHSNAHRTMDY 93
Query: 123 VGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGE 182
+ + P H+ +G+ D + L++V A R R + S A D
Sbjct: 94 TVKADGARGLKPALNHF-LGIYDPKSGKLEVVE-AKKMTMRAAVRAKQSAAAAADE---R 148
Query: 183 ISAEVQANMKAMLDTRYGTKKSLR--QSKKMHAL---NKENDPESQKDLALK-------- 229
+++ +K L +GTKK+ + Q ++A+ K + ++ D A +
Sbjct: 149 DASQTMMQLKIDLGQTFGTKKAKKAIQENVLNAIAPQKKAGEAPTKIDAAARAMLSSVGE 208
Query: 230 MKSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKII----LK----GEWDFVQD 281
+ S ++E L++ D VP + AT Q Y +II LK EW Q+
Sbjct: 209 VTSTMASREELQAVV-DEARPVPIPNLEATEIQDVYDPKRIIGADILKLVPVREW---QE 264
Query: 282 IFNHVSAGSEVISDAYPS-FVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMD 340
H S PS FV R+ ++ +D ++ + F ++ HS
Sbjct: 265 KVQHKE------SIQVPSRFVAARVTRVAGNEDATDRLRVLRYFFFVLLFY----LHSKP 314
Query: 341 GGASAKQHRIPKILHQKFLTSFSDA--ES--KRLSDDK------IHLLISYVLVLTLHAD 390
G A + P+ ++FL +A ES ++ SD I LLI++ V D
Sbjct: 315 GKARGTRSIPPRDKLREFLAPAPEAVVESIRRKFSDRGEMRKFHIDLLITHCCVFASIID 374
Query: 391 DFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKN------MLYATLPVPLQFPK 440
+F + ++ DL++ + + +F ++G ++ N + A L +PL FPK
Sbjct: 375 NFEVDTQNLRDDLKIDQKTMNAYFHEIGGRVKPVTNKETKTTVSLARLALPLNFPK 430
>gi|50304747|ref|XP_452329.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641462|emb|CAH01180.1| KLLA0C02959p [Kluyveromyces lactis]
Length = 412
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 19/153 (12%)
Query: 137 CHYAVGVLDRSTQTLKI--VPIAANKIF-RLEPRVRGSDVADKDAGKGEISAEVQAN-MK 192
Y VGV D +T+++++ P+ ++K+ + + G D+ A V+A M+
Sbjct: 73 SQYVVGVYDAATKSVELYKAPLVSSKVLSKSRKNLMGPDIK---------QANVRAALMR 123
Query: 193 AMLDTRYGTKKSLRQSKKMHALNKENDP--ESQKDLALKMKSVKI---NKEALESTTSDT 247
L +GTKK+ + M ++D +S D+ +K+ +KE L+ T S
Sbjct: 124 NALGEAFGTKKAKKAIADMERNRIDSDKLVDSAIDIVDTVKTASKELPSKEELQETVSSD 183
Query: 248 VLNVPPYDANATTPQQAYPLDKIILKGEWDFVQ 280
P D +AT +Q YPL II K EW F++
Sbjct: 184 -RPTPLADLDATDVEQIYPLYNIIPKKEWSFIR 215
>gi|196014153|ref|XP_002116936.1| hypothetical protein TRIADDRAFT_60982 [Trichoplax adhaerens]
gi|190580427|gb|EDV20510.1| hypothetical protein TRIADDRAFT_60982 [Trichoplax adhaerens]
Length = 437
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 20/125 (16%)
Query: 311 IQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRL 370
++D+++ + + + YI++L++F H + ++ I + K S D S +L
Sbjct: 270 LEDNLKLEKICYLL-YISYLIQF---HHLKAKDFRGKNEILVGIPDKIQISLLDNFSVKL 325
Query: 371 SDD-----KIHL-----------LISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHF 414
+DD HL L++ ++VL L DDFR N +A+DL+++E + D
Sbjct: 326 NDDPQNKRYYHLGRCVTKFAKDKLLARIIVLALFIDDFRLNCNVLARDLKITEKRFTDVA 385
Query: 415 EKLGC 419
+ +GC
Sbjct: 386 KVVGC 390
>gi|326935455|ref|XP_003213786.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49-like
[Meleagris gallopavo]
Length = 351
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 96/229 (41%), Gaps = 44/229 (19%)
Query: 251 VPPYDANATTPQQAYPLDKIILKGEWDFVQD---IFNHVS---AGSEVISDAYPSFVCNR 304
+PP +A P+ Y + I+ E++ +Q F +++ + ++ SFV
Sbjct: 132 LPPCHEDADKPENVYKFEDILSPAEYEALQSPAAAFINITPEEVAKKTEEKSHCSFVLEE 191
Query: 305 IHKLREIQDDVEKQTLASIFSYITHLVKF------KDQHSMDGGASAKQHRIPKILHQKF 358
+ L D+ + A ++ L+KF K +H M P I+ +K
Sbjct: 192 LKFLP--ADEKSRDHKARCLWFLDILIKFSFLKIIKKKHPMGP-------ECPHIISRKL 242
Query: 359 LTSFSDAESKRLSDDKIHLLIS---------YVLVLTLHADDFRTNPTDIAKDLRMSEFK 409
+ +F+ S ++ + LIS YV+ L LH +F+ + T + DL++ E +
Sbjct: 243 MKNFT---SLTYNNGSVQNLISASLKTKIAAYVIALALHIKNFQIDLTVLQNDLKLHESR 299
Query: 410 LRDHFEKLGCKLLREKNM-----------LYATLPVPLQFPKAIQRRRR 447
+ D + K+ + K M +LP+P+Q +R+RR
Sbjct: 300 MMDIARAMRLKVSKAKGMPGLENDENHKLGTLSLPLPVQKASGSRRKRR 348
>gi|453083688|gb|EMF11733.1| RNA polymerase I associated factor, A49-like protein
[Mycosphaerella populorum SO2202]
Length = 441
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 70/152 (46%), Gaps = 31/152 (20%)
Query: 324 FSYITHLVKFKDQHSMDGGASA------KQHRIPKILHQKFLTSFSDAESKRLSDD---- 373
Y+T L++F+D + GG K+ + K+ ++ T D+ +R ++D
Sbjct: 291 LKYLTLLLEFRDLAT--GGGRGPKKLPKKEAMLKKLPPSRWPTELVDSVRRRFTNDTGGE 348
Query: 374 ----KIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLR------ 423
++ L +++ L L AD + T+ + +D+++ +L +F +LG ++ +
Sbjct: 349 LGKWQMDNLSTHICALALFADHWETDVWHLKEDMKLDLKELSQYFMELGARIHKITESER 408
Query: 424 -EKNML--------YATLPVPLQFPKAIQRRR 446
+NM A L +PL+FPK RR
Sbjct: 409 TRRNMTKAQAAATRMAKLKIPLEFPKVRMGRR 440
>gi|443895654|dbj|GAC72999.1| RNA polymerase I 49 kDa subunit [Pseudozyma antarctica T-34]
Length = 522
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 352 KILHQKFLTSFSD--AESKRLSDDKIHL--LISYVLVLTLHADDFRTNPTDIAKDLRMSE 407
K + + LT+FS+ A S R H L++Y+ L LH D+F + +A++ ++
Sbjct: 420 KRIVRALLTTFSETPANSDRAQMSAFHQTKLLAYMCALALHLDNFSVDYDKLARNCNIAP 479
Query: 408 FKLRDHFEKLGCKLLREKNMLYATLPVPLQFPK 440
LR+ F LGC L P P+
Sbjct: 480 STLRELFRTLGCTAATTGGEKRMVLKTPFTLPQ 512
>gi|322709332|gb|EFZ00908.1| hypothetical protein MAA_03504 [Metarhizium anisopliae ARSEF 23]
Length = 444
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 96/430 (22%), Positives = 166/430 (38%), Gaps = 79/430 (18%)
Query: 63 QPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVY--------RNMNEKKNRTGRMELVV- 113
+P PP++ P + E+ V Y R+ + K G EL++
Sbjct: 39 RPKHCPPVIATTPGV----------EISENVAFYPYQPREGSRSKSTKSKHAGDKELLLH 88
Query: 114 SPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDV 173
S S+DY + HY VG+ D T L++V A K+ VRG V
Sbjct: 89 STSHRSLDYTAREEGKRGLNQLVNHY-VGIYDPKTGNLEVV--EAKKMV-----VRGM-V 139
Query: 174 ADKDAGKGEISAEV-QANM---KAMLDTRYGTKKSLRQSKK--MHALNKENDP------- 220
K A + ++ + NM K L +GTKK+ + ++ ++A+ + P
Sbjct: 140 RAKQAPASSMGEDLAKRNMMERKTDLGQTFGTKKAKKVIRETVLNAIAPQKKPGDSPTKI 199
Query: 221 -ESQKDLALKMKSVKIN---KEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEW 276
+ K + + V N +E L++ D VP + +A Q Y + I+
Sbjct: 200 DNAGKAILSSVGEVTTNMATREELQAAV-DEAKPVPRANLDALDIQDVYDPNVIVGADIL 258
Query: 277 DFV-----QDIFNHVSAGSEVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLV 331
+ V Q+ H + G + IS FV R++ + + + + S++ L
Sbjct: 259 NLVPIREWQEKVRH-NEGVQTIS----RFVAARVNAVASNDAAITRLRVLRYLSFVL-LF 312
Query: 332 KFKDQHSMDGGASAKQHR---------IPKILHQKFLTSFSDAESKRLSDDKIH--LLIS 380
K G R P+ + + FSDA R K H LL++
Sbjct: 313 YLKTTPGKQRGTRQVPPREKLRELLSPAPEAVVESIRRKFSDAGVVR----KFHIDLLMA 368
Query: 381 YVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLL-------REKNMLYATLP 433
Y VL D+F + ++ DLR+ + + +F ++G ++ + + A L
Sbjct: 369 YCCVLACIVDNFEVDTQNLRDDLRLDQKTMNQYFHEIGGRVRPVSRKAEGGRAIYVARLT 428
Query: 434 VPLQFPKAIQ 443
+PL FPK Q
Sbjct: 429 LPLDFPKQRQ 438
>gi|449282913|gb|EMC89648.1| DNA-directed RNA polymerase I subunit RPA49, partial [Columba
livia]
Length = 402
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 57/283 (20%), Positives = 119/283 (42%), Gaps = 42/283 (14%)
Query: 199 YGTKKSLR--QSKKMHALNKENDPESQKDLALKMKSVKINKEALESTTSDTVLNV----P 252
+GT K R S++M+A+ + + A + K ++ D N+ P
Sbjct: 125 FGTSKQKRALNSRRMNAVGNDVVNTAVTKAAANVIEAKGVTALIQDVAQDEEQNISIFLP 184
Query: 253 PYDANATTPQQAYPLDKIILKGEWD--------FVQDIFNHVSAGSEVISDAYPSFVCNR 304
P + +A P+ Y + I+ E+ FV ++ +E ++ SFV
Sbjct: 185 PCNEDADKPENVYKFEDILSPAEYKALEVPAAVFVNITQEEITKKTE--DKSHCSFVLEE 242
Query: 305 IHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFSD 364
+ L ++ +++ A ++ L+KF + + P I+ +K + +F+
Sbjct: 243 LKFLPANEESRDRK--ARCLWFLDTLIKFSHLKVIKK-KNPMGPECPHIISKKLMKNFT- 298
Query: 365 AESKRLSDDKIHLLIS---------YVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFE 415
S ++ + L+S YV+ L LH ++F+T+ T + DL++ E ++ D +
Sbjct: 299 --SLTYNNGSVQNLVSASMKAKITAYVIALALHINNFQTDLTVLQNDLKLQESRMMDIAK 356
Query: 416 KLGCKLLREKN-----------MLYATLPVPLQFPKAIQRRRR 447
+ K+ + K + +LP+P+Q QR+R+
Sbjct: 357 AMRLKISKAKGLPGLGDDHNHKLGTLSLPLPVQKASVSQRKRK 399
>gi|429860244|gb|ELA34986.1| zeta toxin family protein [Colletotrichum gloeosporioides Nara gc5]
Length = 918
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 140/346 (40%), Gaps = 65/346 (18%)
Query: 138 HYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEIS-AEVQA--NMKAM 194
HY +GV D T L++V A K+ VRG+ A + + + + A+ Q+ +K
Sbjct: 586 HY-IGVFDPKTGKLEVV--EAKKMV-----VRGTARAKQASDEAMTAPADYQSFYALKTD 637
Query: 195 LDTRYGTKKSLR--QSKKMHALNKENDPESQKDLALKMKSVKINKEAL----ESTTS--- 245
L +GT+K+ + +S ++A+ DP K A KS +K L E T +
Sbjct: 638 LGQTFGTRKAKKAIESVTLNAI----DPNKGKAGASPRKSTAADKATLKQIGEITATMAS 693
Query: 246 --------DTVLNVPPYDANATTPQQAYPLDKIILKGEWDF-----VQDIFNHVSAGSEV 292
D VP + A Q Y D+ I + +F V+D G +V
Sbjct: 694 KEELQDIVDQAKPVPRPNLEADAIQDVYDPDEFIGR---EFLAAVPVKDWIEPTKKGEDV 750
Query: 293 ISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASA------- 345
Y V R+ K+ + +V K L F ++ G
Sbjct: 751 --QVYSRHVAARVKKIVDT-GNVTKIRLLRYFYFLFLFYTMAQPGKQRGTKRVPPREKLK 807
Query: 346 -KQHRIPKILHQKFLTSFSDAESKRLSDDKIH--LLISYVLVLTLHADDFRTNPTDIAKD 402
K P+ + ++ FSD R K H LLI++ L D+F + + + +D
Sbjct: 808 EKLAPAPQAVIEQIRRKFSDGGEIR----KFHSDLLIAHCCALACIIDNFEVDTSKLRED 863
Query: 403 LRMSEFKLRDHFEKLGCKL----LREKNML----YATLPVPLQFPK 440
+R+ + + +F ++G ++ +EK A LP+PLQFPK
Sbjct: 864 MRLDQKDMNTYFYEIGARVKPVASKEKGSKQQHHIAKLPLPLQFPK 909
>gi|340515725|gb|EGR45977.1| predicted protein [Trichoderma reesei QM6a]
Length = 439
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 351 PKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKL 410
P+ + + FSDA +L I LLI++ L D+F + + DLR+ + +
Sbjct: 338 PEAVIENIRRKFSDA--GQLRKFHIDLLIAHCCALACIVDNFEVDTQALRDDLRIDQRMM 395
Query: 411 RDHFEKLGCKL------LREKNMLYATLPVPLQFPKAIQRRRR 447
+F ++G ++ ++ + A L +PL FPK Q R R
Sbjct: 396 NQYFHEIGARVKPVKDKAEDRILHVAKLALPLDFPKQRQIRAR 438
>gi|167518828|ref|XP_001743754.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777716|gb|EDQ91332.1| predicted protein [Monosiga brevicollis MX1]
Length = 943
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 90/219 (41%), Gaps = 30/219 (13%)
Query: 251 VPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVI------SDAYPSFVCNR 304
VP YD AT P YPL +I + V ++ +A E ++ + V +
Sbjct: 448 VPQYDPAATVPADVYPLKHLISHADASAVAELCKPFTAADEQTVAKWKATNKFSPLVFDG 507
Query: 305 IHKLREIQDDVEKQTLASIFSYITHLVKFKD---QHSMDGGASAKQ--HRIPKILHQKFL 359
+ L + K+ LA + Y+ L+KF + H K+ +P + F+
Sbjct: 508 L-DLLVTKSGSAKKMLARVLQYLVELLKFYNYVRTHRKIVAIEVKEELQSVPPAIIDSFM 566
Query: 360 TSFSDAES-----------KRLSDDKIHLLISYVLVLTLHADDF-RTNPTDIAKDLRMSE 407
F ++S LS +HLLI ++LVL HA F + + +A+ L M+
Sbjct: 567 DKFVFSDSTGQTPSVRENGANLSKRNMHLLIHHLLVLAFHARGFSKLSSARVAEALSMAP 626
Query: 408 FKLRDHFEKLGCKLLREK----NMLY--ATLPVPLQFPK 440
H + +GCK K Y A L PLQFPK
Sbjct: 627 ATAVTHLKAIGCKCSAVKATPQTAAYHVAELVAPLQFPK 665
>gi|363747926|ref|XP_003644181.1| hypothetical protein Ecym_1109 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887813|gb|AET37364.1| hypothetical protein Ecym_1109 [Eremothecium cymbalariae
DBVPG#7215]
Length = 411
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 26/180 (14%)
Query: 112 VVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKI--VPIAANKIFRLEPRVR 169
V+ + ++Y G S + + + C Y +G+ D S + +++ P+ K++ R
Sbjct: 50 VLHGENERLEYKGKS---DELLDESCSYVLGLYDHSKKAIELYKTPVIPTKVYSKSKR-- 104
Query: 170 GSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALK 229
+++ +GE A + M+ L +GTKK+ KK A + N +S K +
Sbjct: 105 --NLSGPKIKQGEAKA---SEMRNALGEAFGTKKA----KKAIADIERNRIDSDKVVHSA 155
Query: 230 MKSVKI---------NKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQ 280
+ + ++E L+ T+S T P + +AT +Q YPL II K EW F++
Sbjct: 156 IDIINNVTDSGKHLPSREQLQ-TSSSTDRPTPLANVDATDVEQIYPLHNIIPKKEWSFLR 214
>gi|115438280|ref|XP_001218026.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188841|gb|EAU30541.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 500
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/229 (18%), Positives = 87/229 (37%), Gaps = 51/229 (22%)
Query: 251 VPPYDANATTPQQAYPLDKIILKG-----EWDFVQDIFNHVSAGSEVISDAYPSFVCNRI 305
+PP + A+ P YPLD ++ G + VQ + V+AG V + + +V R+
Sbjct: 240 LPPANLAASHPADVYPLDVLVPNGLATLRQLPGVQAWHDAVAAGQPVSTTSR--YVSRRV 297
Query: 306 HKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS-- 363
+ + + + Q L IF + + + ++P + + S S
Sbjct: 298 EAVVQSGNTTQLQVLRFIFLLLEFARALRSARGDPKASGPGSKKLPSRDDLRRILSSSTG 357
Query: 364 -----------------DAESKRLSDDKIH-------LLISYVLVLTLH----------- 388
DA ++ + H LL + + L+LH
Sbjct: 358 ATDDAAAATETLPDPVIDAVRRKFAPHGGHVTKHDLTLLHTTICALSLHIPPQPAKDGGA 417
Query: 389 -------ADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKLLREKNMLYA 430
++ T+P+D+ DLR++ + +F +LGC++ + + +A
Sbjct: 418 SAVGGNAPNELATDPSDLRDDLRLTNADITQYFRELGCRIDKPRESEFA 466
>gi|326437676|gb|EGD83246.1| hypothetical protein PTSG_03877 [Salpingoeca sp. ATCC 50818]
Length = 424
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 83/379 (21%), Positives = 143/379 (37%), Gaps = 99/379 (26%)
Query: 100 NEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAAN 159
N K+ + L V ++DYV S ++ +Y VGV T L+++P
Sbjct: 42 NYGKSSSSNEPLEVRAHADAIDYVSMPSS------RYTNYMVGVRKAGTNELQLIPAT-- 93
Query: 160 KIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKEND 219
+ + PR+ S A++ + E + +A L +G KK Q + +H+ +
Sbjct: 94 -LLEMTPRL--STEANQARNPTLDTPEKRQQARAHLVESFGGKK---QKRVLHSRTR--- 144
Query: 220 PESQKDLALKMKSVKINKEALE---STTSDTVL-------------------------NV 251
++ EALE ST +D V +
Sbjct: 145 -------------YMLSDEALETVASTMADAVTPGSSSSSSSSADGDDGGDVEGGKGRML 191
Query: 252 PPYDANATTPQQAYPLDKIILKGEWDFVQDIF--NHVSAGSEVIS----DAYPSFVCNRI 305
PP + + YPLD ++L E ++ ++ H E+ + + + FV + +
Sbjct: 192 PPNNLKSKDAAGVYPLDGLVLSNERAALKGMYPSFHKPKEEELTAWRGQNRFMPFVIDVL 251
Query: 306 HKLREIQDDVE-KQTLASIFS--YITHLVKFKDQHSMDGGASAKQHRIPK---------- 352
R+I + KQ A I + Y+ L+KF + A R+P+
Sbjct: 252 E--RDIMISAKGKQREARILALKYLAELLKFHN--------CAVVRRLPRKRSDLVKTLK 301
Query: 353 --------ILHQKFLTSFSDAESK---RLSDDKIHLLISYVLVLTLHADDFRTNPTD-IA 400
KFL D+ S LS K HLL+ Y+L + LHA ++ P D A
Sbjct: 302 STPDAVIDGFINKFLIDTDDSSSSPKLFLSKQKQHLLLMYILTIALHACKYKNLPLDAFA 361
Query: 401 KDLRMSEFKLRDHFEKLGC 419
+L+ ++ + LGC
Sbjct: 362 TELKTPLKEVENVARALGC 380
>gi|346464535|gb|AEO32112.1| hypothetical protein [Amblyomma maculatum]
Length = 385
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 83/180 (46%), Gaps = 11/180 (6%)
Query: 251 VPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGS-----EVISDA-YPSFVCNR 304
+PP + +AT PQ Y ++ II + D++ ++ + + + SDA YP +V +R
Sbjct: 168 IPPQNRDATIPQDVYRIEDIIPPEQHDYLDELAEPLLNATPDQLAQWRSDATYPEYVISR 227
Query: 305 IHKL-REIQDDVEKQTLASIFSYITHL--VKFKDQHSMDGGASAKQHRIPKILHQKFLTS 361
+ +L R+ ++ + L + + + +K+ D D Q +L +TS
Sbjct: 228 VERLSRDPENRAIEARLLVFYCMLISVSRLKYNDVKKKDPLPDIAQPLKGILLDTFTITS 287
Query: 362 FSD--AESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGC 419
S+ A S+ +++Y++V+ L +D++ + + D + S+ L LGC
Sbjct: 288 RSERGATSRNFPQRMKDKVLAYIMVIVLILEDYKFDFKTVQLDTKASDRTLTTLAYALGC 347
>gi|146413314|ref|XP_001482628.1| hypothetical protein PGUG_05648 [Meyerozyma guilliermondii ATCC
6260]
Length = 410
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 93/383 (24%), Positives = 155/383 (40%), Gaps = 67/383 (17%)
Query: 110 ELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVR 169
E + ++DY G S G M Y VG+ D P+ N P V
Sbjct: 49 EYAIHGETDTLDYNGESEGGSRM----NDYIVGLYD---------PVKKNVQLYRAPLVV 95
Query: 170 GSDVA-DKDAGKG---EISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKEN---DPES 222
G A K + KG ++ + L +GTKK+ K N E D +
Sbjct: 96 GRVTARSKRSYKGPRIKLVGTKNVQQRNALGEAFGTKKA-----KAAITNYEKNKIDADK 150
Query: 223 QKDLALK-MKSVKINKEAL---ESTTSDTVLNVPPYDAN--ATTPQQAYPLDKIILKGEW 276
+D+ + +++VK + + L E +V P AN AT+ + YP+ II E
Sbjct: 151 LQDVEMDIIENVKESTQTLPTHEEIQQASVEERPTPKANVEATSVEDIYPISGIITDREM 210
Query: 277 DF--VQDIFNHVSAGSEVISDAYP--SFVCNRIHKLREIQDDVEKQTL---ASIFSYITH 329
V + G + S Y ++V +R+ K +D+EK L AS+ +
Sbjct: 211 ALIRVNGVLEEEDIGRRLESLPYAKSTYVNDRLAKYIA-SNDIEKLQLLYYASLLFGVHE 269
Query: 330 LVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRL--SDDKIHLL--------I 379
+ KD+ ++ + +R+P+ L L F+ A S + S D+ ++ +
Sbjct: 270 NRRVKDKETL---MTRLLNRVPEGLVDGILAKFTIARSSQFGKSKDRSFMIDPAHEDKLL 326
Query: 380 SYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKL----LREKNML------- 428
Y+L L LH D F + T +A +L + KL F+ LG + + + L
Sbjct: 327 CYLLALILHIDSFMVDLTPLAHELNLKPTKLSSLFKALGATIKAPSVAQAQALNISKSAA 386
Query: 429 ----YATLPVPLQFPKAIQRRRR 447
ATL VP + P+ ++R +R
Sbjct: 387 ASHKIATLKVPFKLPEMVRRGKR 409
>gi|448099661|ref|XP_004199201.1| Piso0_002616 [Millerozyma farinosa CBS 7064]
gi|359380623|emb|CCE82864.1| Piso0_002616 [Millerozyma farinosa CBS 7064]
Length = 567
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 30/163 (18%)
Query: 195 LDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVKINKE--ALESTTSDTVLNVP 252
LD YG KSLR S + + ES D L + S N E L S V + P
Sbjct: 61 LDVSYGLYKSLRSSVSSNPV----ISESSNDFVLPVDSSLTNSEISILTSYAESQVYDAP 116
Query: 253 PYDANATTPQQAYPLDKIILKGEWDFVQDIFN----HVSAGSEVISDAYPSFVCNRIHK- 307
Y +L W + FN + AG + I+ + +C +
Sbjct: 117 QY----------------VLTSFWSWCYGNFNVTISYTPAGKQKITKHDSTVICPKRGSS 160
Query: 308 -LREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHR 349
L + + ++E+ L+SI +Y H K+ DQ +AK+H+
Sbjct: 161 FLYDYRGELEQIGLSSILAYAYHTRKYNDQ--TYNAVTAKRHK 201
>gi|308810056|ref|XP_003082337.1| unnamed protein product [Ostreococcus tauri]
gi|116060805|emb|CAL57283.1| unnamed protein product [Ostreococcus tauri]
Length = 506
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 81/182 (44%), Gaps = 24/182 (13%)
Query: 111 LVVSPRDSSVDYVGTSYS------GEAM----APQFCHYAVGVLDRSTQT----LKIVPI 156
L+V R VDYVG +++ G A +G L +++++ L+++PI
Sbjct: 113 LIVRGRGEGVDYVGKNFTHDLTGIGRAYERESGSDTMTTMLGRLRKTSESGTYDLELIPI 172
Query: 157 AANKIFRLEPRVRGSDVADKDAGKGEISAEVQANMKAMLDTR----YGTKKSLRQSKKMH 212
A ++ ++ R+ + K E++ ++A ++ + + + K R +M+
Sbjct: 173 AGGRVIDMDVRLHQHNYTKHS--KAELADLSDPAVRAAINAKQLEAFASDKRKRLVNRMN 230
Query: 213 ALNKENDPESQKDLALKM----KSVKINKEALESTTSDTVLNVPPYDANATTPQQAYPLD 268
A K + + ++M + + A + + N+PP++A AT P AYP++
Sbjct: 231 AARKLDVSAIASPVQMEMHIADGAANVKTRAELVSEAGKTRNIPPHEATATEPSLAYPIE 290
Query: 269 KI 270
+
Sbjct: 291 SM 292
>gi|45199156|ref|NP_986185.1| AFR638Cp [Ashbya gossypii ATCC 10895]
gi|44985296|gb|AAS54009.1| AFR638Cp [Ashbya gossypii ATCC 10895]
gi|374109417|gb|AEY98323.1| FAFR638Cp [Ashbya gossypii FDAG1]
Length = 409
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 27/167 (16%)
Query: 127 YSGEAMAPQFCHYAVGVLDRSTQTLKI--VPIAANKIF-RLEPRVRGSDVADKDAGKGEI 183
Y G + Y +GV D S++++++ P+ + + + R+ G D+ DA
Sbjct: 60 YEGRVDNNKGYQYMLGVYDPSSKSIELYQAPVLPTSVISKSKKRLAGKDIKQADAR---- 115
Query: 184 SAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQK----------DLALKMKSV 233
+ M+ L +GTKK+ KK A + N +S K + K +
Sbjct: 116 ----ASTMRTALGQAFGTKKA----KKAIADLERNRIDSDKLVGSVVDIVGSVRAAAKDL 167
Query: 234 KINKEALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQ 280
+E + + D +PP + +AT +Q YP+ II + EW+F++
Sbjct: 168 PTQQEMAATISEDR--PIPPPNVDATDVEQIYPVRSIIPQHEWNFIR 212
>gi|366999576|ref|XP_003684524.1| hypothetical protein TPHA_0B04200 [Tetrapisispora phaffii CBS 4417]
gi|357522820|emb|CCE62090.1| hypothetical protein TPHA_0B04200 [Tetrapisispora phaffii CBS 4417]
Length = 409
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 15/84 (17%)
Query: 378 LISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGC-------------KLLRE 424
L+ Y+L + LH D+F + +A++L + +L + F LGC + +
Sbjct: 322 LLCYILAIILHLDNFIVEISPLAQELNIKPSRLVNLFRILGCIVKGATVSQAEAFGIPKS 381
Query: 425 KNMLY--ATLPVPLQFPKAIQRRR 446
Y ATL VP + P+ ++R R
Sbjct: 382 TASTYKIATLKVPFRLPEMVRRGR 405
>gi|146332251|gb|ABQ22631.1| DNA-directed RNA polymerase I-associated factor 53 kDa subunit-like
protein [Callithrix jacchus]
Length = 166
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 20/118 (16%)
Query: 296 AYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILH 355
+ PS V +R H+ R I ++ L+KF+ Q + S IP I++
Sbjct: 9 SLPSNVESRDHQARRIW-------------FLDTLIKFRAQKVVKRKNSLGPD-IPHIIN 54
Query: 356 QKFLTSFS-----DAESKRLSDDKIHLLIS-YVLVLTLHADDFRTNPTDIAKDLRMSE 407
K L F+ + + L D + I+ YV++L LH +DF+ + T + +DL++SE
Sbjct: 55 TKLLKHFTCLTYNNGRLRNLISDSMKAKITAYVIILALHINDFQIDLTMLQRDLKLSE 112
>gi|358396316|gb|EHK45697.1| hypothetical protein TRIATDRAFT_299349 [Trichoderma atroviride IMI
206040]
Length = 437
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 351 PKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKL 410
P+ + + FSD +L I LLI++ L D+F + + DL++ + +
Sbjct: 336 PEAVVENIRRKFSDG--GQLRKFHIDLLIAHCCALACIVDNFEVDTQALKDDLKLDQRVM 393
Query: 411 RDHFEKLGCKL------LREKNMLYATLPVPLQFPKAIQRRRR 447
+F ++G ++ E+ + A L +PL PK Q R R
Sbjct: 394 NQYFHEIGARVKPIKDKTEERTLQVAKLTLPLDLPKQRQIRAR 436
>gi|119182003|ref|XP_001242160.1| hypothetical protein CIMG_06056 [Coccidioides immitis RS]
gi|392865053|gb|EAS30799.2| hypothetical protein CIMG_06056 [Coccidioides immitis RS]
Length = 479
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 27/105 (25%)
Query: 370 LSDDKIHLLISYVLVLTLH----------ADDFRTNPTDIAKDLRMSEFKLRDHFEKLGC 419
L+ + I L++ + LTLH ++ T+P D+ DL + +F++LGC
Sbjct: 375 LARNDITFLLTTICALTLHIPPASGAPHAPNELATDPADLRDDLSLENQTALQYFKELGC 434
Query: 420 KLLREKNMLYAT-----------------LPVPLQFPKAIQRRRR 447
++ + + YA L +P++FPK + RR
Sbjct: 435 RIDKPRESEYAKWGIKKGKTEAAMKRIARLRIPVEFPKVSRGGRR 479
>gi|190348987|gb|EDK41550.2| hypothetical protein PGUG_05648 [Meyerozyma guilliermondii ATCC
6260]
Length = 410
Score = 38.5 bits (88), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 95/383 (24%), Positives = 157/383 (40%), Gaps = 67/383 (17%)
Query: 110 ELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVR 169
E + ++DY G S G M Y VG+ D P+ N P V
Sbjct: 49 EYAIHGETDTLDYNGESEGGSRM----NDYIVGLYD---------PVKKNVQLYRAPLVV 95
Query: 170 GSDVA-DKDAGKG-EISAEVQANM--KAMLDTRYGTKKSLRQSKKMHALNKEN---DPES 222
G A K + KG I + N+ + L +GTKK+ K N E D +
Sbjct: 96 GRVTARSKRSYKGPRIKSVGTKNVQQRNALGEAFGTKKA-----KAAITNYEKNKIDADK 150
Query: 223 QKDLALK-MKSVKINKEAL---ESTTSDTVLNVPPYDAN--ATTPQQAYPLDKIILKGEW 276
+D+ + +++VK + + L E +V P AN AT+ + YP+ II E
Sbjct: 151 LQDVEMDIIENVKESTQTLPTHEEIQQASVEERPTPKANVEATSVEDIYPISGIITDREM 210
Query: 277 DF--VQDIFNHVSAGSEVISDAYP--SFVCNRIHKLREIQDDVEKQTL---ASIFSYITH 329
V + G + S Y ++V +R+ K +D+EK L AS+ +
Sbjct: 211 ALIRVNGVLEEEDIGRRLESLPYAKSTYVNDRLAKYIA-SNDIEKLQLLYYASLLFGVHE 269
Query: 330 LVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFSDAESKRL--SDDKIHLL--------I 379
+ KD+ ++ + +R+P+ L L F+ A S + S D+ ++ +
Sbjct: 270 NRRVKDKETL---MTRLLNRVPEGLVDGILAKFTIARSSQFGKSKDRSFMIDPAHEDKLL 326
Query: 380 SYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKL----LREKNML------- 428
Y+L L LH D F + T +A +L + KL F+ LG + + + L
Sbjct: 327 CYLLALILHIDSFMVDLTPLAHELNLKPTKLSSLFKALGATIKAPSVAQAQALNISKSAA 386
Query: 429 ----YATLPVPLQFPKAIQRRRR 447
ATL VP + P+ ++R +R
Sbjct: 387 ASHKIATLKVPFKLPEMVRRGKR 409
>gi|444314455|ref|XP_004177885.1| hypothetical protein TBLA_0A05730 [Tetrapisispora blattae CBS 6284]
gi|387510924|emb|CCH58366.1| hypothetical protein TBLA_0A05730 [Tetrapisispora blattae CBS 6284]
Length = 414
Score = 38.1 bits (87), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 98/238 (41%), Gaps = 57/238 (23%)
Query: 251 VPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNHVSAGSEVISDAYPSFVCNRIHKLRE 310
P + +AT +Q YP+ II K EW+F++ AG ++ + P K E
Sbjct: 188 TPLANLDATDVEQIYPIHNIIPKREWNFIR-------AGP-ILKEQDP-------EKKLE 232
Query: 311 IQDDVEKQTLA---SIFSYITHLVKFKDQHSMDG--GASA------------KQHRIPKI 353
+ + + LA SIF + L K + + + G +A K + P++
Sbjct: 233 LLPYTDSKYLAKKLSIFQEPSQLPKLQLLYYLSLLMGINANKRINNKTKLLEKLNSPPEV 292
Query: 354 LHQKFLTSFSDAESK---RLSDDKIHL-------LISYVLVLTLHADDFRTNPTDIAKDL 403
L L F+ + S R D + L+ Y+LV+ LH D+F + +A++L
Sbjct: 293 LVDGILDRFTISRSSLTGRKKDQSYFIDPQNEDKLLCYILVIILHLDNFLVEVSPLAQEL 352
Query: 404 RMSEFKLRDHFEKL-----GCKLLREK----------NMLYATLPVPLQFPKAIQRRR 446
+ KL F + GC + + + + ATL VP + P+ +R +
Sbjct: 353 NLKPSKLATLFRTIGAIVKGCTVTQAEVFGIPKSSAASYKVATLKVPFKLPELTKRSK 410
>gi|448103516|ref|XP_004200054.1| Piso0_002616 [Millerozyma farinosa CBS 7064]
gi|359381476|emb|CCE81935.1| Piso0_002616 [Millerozyma farinosa CBS 7064]
Length = 571
Score = 38.1 bits (87), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 30/163 (18%)
Query: 195 LDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSVKINKE--ALESTTSDTVLNVP 252
LD YG KSLR S + + +N D L + S N E L S V + P
Sbjct: 61 LDVSYGLYKSLRNSVSSNPVISQN----SNDYVLPVDSSLTNSEISILTSYAESQVFDAP 116
Query: 253 PYDANATTPQQAYPLDKIILKGEWDFVQDIFN----HVSAGSEVISDAYPSFVC--NRIH 306
Y +L W + FN + G + I+ + + C +
Sbjct: 117 QY----------------VLTSFWSWCYGNFNVTISYTPTGKKKITKHHATVTCPKHSSS 160
Query: 307 KLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHR 349
L + + ++E+ L+SI +Y H K+ DQ + D A+AK+H+
Sbjct: 161 FLYDYRSELEQIGLSSILAYAYHSRKYNDQ-TYD-TATAKRHK 201
>gi|365988258|ref|XP_003670960.1| hypothetical protein NDAI_0F03990 [Naumovozyma dairenensis CBS 421]
gi|343769731|emb|CCD25717.1| hypothetical protein NDAI_0F03990 [Naumovozyma dairenensis CBS 421]
Length = 417
Score = 38.1 bits (87), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 70/360 (19%), Positives = 144/360 (40%), Gaps = 81/360 (22%)
Query: 140 AVGVLDRSTQTLKI--VPIAANKIF-RLEPRVRGSDVADKDAGKGEISAEVQANMKAMLD 196
+G+ ++S T+++ PI ++K+ + +RG + D+ ++ L
Sbjct: 82 VIGIFNKSKNTIQLYKAPIISSKVIAKSSKNLRGPVIKHSDS----------RGLRNALG 131
Query: 197 TRYGTKKSLRQSKKM--HALNKENDPESQKDLALKMKSVKIN---KEALESTTSDTVLNV 251
+GTKK+ + M + ++ + ES D+ +++ + +E L+ST S+
Sbjct: 132 EAFGTKKAKKAIADMERNRIDSDKLTESAIDIVDSVRTAAKDLPTREQLQSTVSND-RPT 190
Query: 252 PPYDANATTPQQAYPLDKIILKGEWDFVQ--DIFNHVSAGSEVISDAYPS---FVCNRIH 306
P + +AT +Q YP++ II E F++ +IF +++ Y + +V ++
Sbjct: 191 PMANLDATDVEQIYPVENIIPTKELQFIRVGNIFKAEDLDTKLELLPYETKSKYVAKKL- 249
Query: 307 KLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRI--------------PK 352
+F+ LVK + + ++ ++R P+
Sbjct: 250 ---------------GVFTQPNQLVKLQLLYYLNLLMGVYENRRVNSKVKLMERLNSPPE 294
Query: 353 ILHQKFLTSFSDAESKRLSDDKIHL----------LISYVLVLTLHADDFRTNPTDIAKD 402
IL L F+ A ++ K L+ Y+L L H D+F + +A++
Sbjct: 295 ILIDGILNRFTVARPGQMGKSKERSFFIDPQHEDKLVCYILTLVFHLDNFIVEISPLAQE 354
Query: 403 LRMSEFKLRDHFEKLGCKLLREKNML----------------YATLPVPLQFPKAIQRRR 446
L + K+ F LG +++ + ATL VP + P+ +R R
Sbjct: 355 LSIKPSKIVSLFRTLGA-IVKGATVAQAEAFGVPKSAANTYKIATLKVPFKLPEMTRRGR 413
>gi|241950711|ref|XP_002418078.1| DNA-Directed RNA Polymerase I, 49 kDa polypeptide, putative
[Candida dubliniensis CD36]
gi|223641417|emb|CAX43378.1| DNA-Directed RNA Polymerase I, 49 kDa polypeptide, putative
[Candida dubliniensis CD36]
Length = 393
Score = 38.1 bits (87), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 91/385 (23%), Positives = 158/385 (41%), Gaps = 78/385 (20%)
Query: 108 RMELVVSPRDSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKI--VPIAANKIFRLE 165
R + V+ +++Y GTS + Y V V D + +++++ P + K+ +
Sbjct: 41 RDDYVLHGETDTLEYNGTSNNDN-------EYVVAVFDPNCKSVELYKTPYISTKVTAKK 93
Query: 166 PRV-RGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKE-NDPESQ 223
RV +G + K AG ++ + L +GTKK+ K N E N +S+
Sbjct: 94 NRVYKGPKI--KSAGVRNVT------QRNALGEAFGTKKA-----KSAITNLEKNRIDSE 140
Query: 224 KDLALKMKSVKINKEALES--TTSDTVLNVPPY-DANATTPQQAYPLDKIILKGEWDF-- 278
K ++M V KE+ T D V P+ + +AT + YPL+KII + +W +
Sbjct: 141 KLQDIEMDIVDTVKESTRDLPTQEDGVDRPAPFANVDATNVEDIYPLEKIIPEKDWQYLR 200
Query: 279 VQDIFNHVS-------AGSEVISDAYPSFVCNRIHKLREIQDDVEKQTL---ASIFSYIT 328
V I + SE I+ P + Q + EK + AS+ +
Sbjct: 201 VSSILTTENPLEKLPFTKSEFITKQLPILIS---------QKNTEKLQMLYYASLLLGVY 251
Query: 329 HLVKFKDQHSMDGGASAKQHRIP-KILHQKFLTSFSDAESKRL--SDDKIHLLISY---- 381
+ KD+ S+ + IP +IL L F+ + + + S DK + Y
Sbjct: 252 ENRRVKDKQSL----MTRLQNIPSEILVDGILDRFAISRATKFGKSKDKSFTIDPYHEDK 307
Query: 382 ----VLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKL----LREKNML----- 428
+ +L LH ++F ++KDL++ +L F LG + + E L
Sbjct: 308 LLTYLFILLLHINNFTVELVPLSKDLKLKNTRLVGLFRALGAIIKSATVGEAEALGIPKS 367
Query: 429 ------YATLPVPLQFPKAIQRRRR 447
ATL VP + P+ +R +R
Sbjct: 368 AVGTYKIATLKVPFKLPELTRRGKR 392
>gi|303318873|ref|XP_003069436.1| hypothetical protein CPC735_026270 [Coccidioides posadasii C735
delta SOWgp]
gi|240109122|gb|EER27291.1| hypothetical protein CPC735_026270 [Coccidioides posadasii C735
delta SOWgp]
Length = 479
Score = 38.1 bits (87), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 27/105 (25%)
Query: 370 LSDDKIHLLISYVLVLTLH----------ADDFRTNPTDIAKDLRMSEFKLRDHFEKLGC 419
L+ + I L + + LTLH ++ T+P D+ DL + +F++LGC
Sbjct: 375 LARNDITFLFTTICALTLHIPPASGAPHAPNELATDPADLRDDLSLENQTALQYFKELGC 434
Query: 420 KLLREKNMLYAT-----------------LPVPLQFPKAIQRRRR 447
++ + + YA L +P++FPK + RR
Sbjct: 435 RIDKPRESEYAKWGIKKGKTEAAMKRIARLRIPVEFPKVSRGGRR 479
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.131 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,842,660,021
Number of Sequences: 23463169
Number of extensions: 290064336
Number of successful extensions: 1435210
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 1228
Number of HSP's that attempted gapping in prelim test: 1406242
Number of HSP's gapped (non-prelim): 23780
length of query: 447
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 301
effective length of database: 8,933,572,693
effective search space: 2689005380593
effective search space used: 2689005380593
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 78 (34.7 bits)