BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013236
(447 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PQU|A Chain A, The Crystal Structures Of Porcine Pathogen Ash57_tbpb
pdb|3PQU|B Chain B, The Crystal Structures Of Porcine Pathogen Ash57_tbpb
Length = 570
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 258 ATTPQQAYP-LDKIILKGEWDFVQDI--------FNHVSAGSEVISDAYPSFVCNRIHKL 308
T+P + P +K+ KG WDF D+ F+ G V + + V NR HK+
Sbjct: 157 GTSPSKELPKGNKVTYKGTWDFTSDVKTSYELSGFSDAGNGKNVAATSISDNV-NRDHKV 215
Query: 309 REIQDDVEKQTLA 321
E D E + +A
Sbjct: 216 GEKLGDNEVKGVA 228
>pdb|1VPB|A Chain A, Crystal Structure Of A Putative Modulator Of Dna Gyrase
(Bt3649) From Bacteroides Thetaiotaomicron Vpi-5482 At
1.75 A Resolution
Length = 451
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 68 PPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSS 119
P Y S+Y D+ + RV R + +KK ++G+ +VV P +SS
Sbjct: 206 PSAYWYESSLYMNDLIKKGIGQKALERVLRKLGQKKVQSGKYTMVVDPMNSS 257
>pdb|3NFH|A Chain A, Crystal Structure Of Tandem Winged Helix Domain Of Rna
Polymerase I Subunit A49 (P4)
pdb|3NFH|B Chain B, Crystal Structure Of Tandem Winged Helix Domain Of Rna
Polymerase I Subunit A49 (P4)
Length = 246
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 371 SDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGC 419
++DKI + Y+L + +H D+F T +A +L + K+ F LG
Sbjct: 171 NEDKI---LCYILAIIMHLDNFIVEITPLAHELNLKPSKVVSLFRVLGA 216
>pdb|1OB0|A Chain A, Kinetic Stabilization Of Bacillus Licheniformis-Amylase
Through Introduction Of Hydrophobic Residues At The
Surface
Length = 483
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 166 PRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQS-KKMHALNKENDPESQK 224
P +G+ AD G ++ + + K + T+YGTK L+ + K +H+ +
Sbjct: 44 PAYKGTSQADVGYGAYDLYDLGEFHQKGTVRTKYGTKGELQSAIKSLHS----------R 93
Query: 225 DLALKMKSVKINKEALESTTSDTVLNVPPYDAN 257
D+ + V +K ++T T + V P D N
Sbjct: 94 DINVYGDVVINHKGGADATEDVTAVEVDPADRN 126
>pdb|1BLI|A Chain A, Bacillus Licheniformis Alpha-Amylase
Length = 483
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 166 PRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQS-KKMHALNKENDPESQK 224
P +G+ AD G ++ + + K + T+YGTK L+ + K +H+ +
Sbjct: 44 PAYKGTSQADVGYGAYDLYDLGEFHQKGTVRTKYGTKGELQSAIKSLHS----------R 93
Query: 225 DLALKMKSVKINKEALESTTSDTVLNVPPYDAN 257
D+ + V +K ++T T + V P D N
Sbjct: 94 DINVYGDVVINHKGGADATEDVTAVEVDPADRN 126
>pdb|1VJS|A Chain A, Structure Of Alpha-Amylase Precursor
Length = 483
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 166 PRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQS-KKMHALNKENDPESQK 224
P +G+ AD G ++ + + K + T+YGTK L+ + K +H+ +
Sbjct: 44 PAYKGTSQADVGYGAYDLYDLGEFHQKGTVRTKYGTKGELQSAIKSLHS----------R 93
Query: 225 DLALKMKSVKINKEALESTTSDTVLNVPPYDAN 257
D+ + V +K ++T T + V P D N
Sbjct: 94 DINVYGDVVINHKGGADATEDVTAVEVDPADRN 126
>pdb|1BPL|A Chain A, Glycosyltransferase
Length = 189
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 166 PRVRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQS-KKMHALNKENDPESQK 224
P +G+ AD G ++ + + K + T+YGTK L+ + K +H+ +
Sbjct: 44 PAYKGTSQADVGYGAYDLYDLGEFHQKGTVRTKYGTKGELQSAIKSLHS----------R 93
Query: 225 DLALKMKSVKINKEALESTTSDTVLNVPPYDAN 257
D+ + V +K ++T T + V P D N
Sbjct: 94 DINVYGDVVINHKGGADATEDVTAVEVDPADRN 126
>pdb|3NFI|A Chain A, Crystal Structure Of Tandem Winged Helix Domain Of Rna
Polymerase I Subunit A49
pdb|3NFI|B Chain B, Crystal Structure Of Tandem Winged Helix Domain Of Rna
Polymerase I Subunit A49
pdb|3NFI|C Chain C, Crystal Structure Of Tandem Winged Helix Domain Of Rna
Polymerase I Subunit A49
pdb|3NFI|D Chain D, Crystal Structure Of Tandem Winged Helix Domain Of Rna
Polymerase I Subunit A49
pdb|3NFI|E Chain E, Crystal Structure Of Tandem Winged Helix Domain Of Rna
Polymerase I Subunit A49
Length = 237
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 371 SDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGC 419
++DKI + Y+L + H D+F T +A +L + K+ F LG
Sbjct: 158 NEDKI---LCYILAIIXHLDNFIVEITPLAHELNLKPSKVVSLFRVLGA 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,227,564
Number of Sequences: 62578
Number of extensions: 495077
Number of successful extensions: 1266
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1262
Number of HSP's gapped (non-prelim): 10
length of query: 447
length of database: 14,973,337
effective HSP length: 102
effective length of query: 345
effective length of database: 8,590,381
effective search space: 2963681445
effective search space used: 2963681445
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)