BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013236
(447 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6GLI9|RPA49_XENLA DNA-directed RNA polymerase I subunit RPA49 OS=Xenopus laevis
GN=polr1e PE=2 SV=1
Length = 419
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/369 (22%), Positives = 176/369 (47%), Gaps = 53/369 (14%)
Query: 95 VYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQTLKI 153
+Y N ++K +T R +++ + D ++YVG ++S + + C Y VGVL++ T +++
Sbjct: 39 LYGNKDDKNPKTKRQKILAAETDR-LNYVGNNFSSDTLKCSSLCRYFVGVLNKETGKMEV 97
Query: 154 VPIAANKIFRLEPRVRGS--------DVADKDAGKGEISAEVQANMKAMLDTRYGTKKSL 205
F+++P ++ D+ D+ + + + A++++ +GT K
Sbjct: 98 YDAEQ---FKMQPILKSGMENELHTEDIVDQP------TKSYREKVDALIES-FGTNKQK 147
Query: 206 R--QSKKMH-----ALNKENDPESQKDLALKMKSVKINKEALESTTSDTVLNVPPYDANA 258
R S+K++ LNK ++ +++ + ++ K+A E DT L +PP D NA
Sbjct: 148 RALSSRKLNQVGSDILNKAM-AKAAEEIIESRGTTELIKDAAEKREQDTSLFLPPCDFNA 206
Query: 259 TTPQQAYPLDKIILKGEWDFVQD----IFNHVSAGSEVISDAYPS--FVCNRIHKLREIQ 312
P+ AY D +I E+ ++ + N S G + + + S FV +H LREI+
Sbjct: 207 DKPENAYKFDNLISPVEYAALETASAALRNITSEGLQQMVEEKKSGLFVLQELHGLREIK 266
Query: 313 DDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQHRI-----PKILHQKFLTSFSDAES 367
D+ A Y+ L+K ++ K+ I P ++ K + +F+
Sbjct: 267 DEKALDHQARCLWYLDALIKLSQLRTV------KRKDILTPECPSVVCWKLMKNFTVETY 320
Query: 368 KR------LSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKLGCKL 421
K +S +++Y++ + LH DF+ + T + +D+++ E ++ + + +G K+
Sbjct: 321 KNGRIQNAISGTTKTKIVAYIIAIALHICDFQVDLTLLQRDMKLKESRILEIAKVMGLKI 380
Query: 422 LREKNMLYA 430
+K M+Y+
Sbjct: 381 --KKRMMYS 387
>sp|O14086|RPA49_SCHPO DNA-directed RNA polymerase I subunit rpa49 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpa49 PE=2 SV=1
Length = 425
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 100/424 (23%), Positives = 178/424 (41%), Gaps = 56/424 (13%)
Query: 57 VQFIPEQPNKAPPLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPR 116
V+ +P + PPLV Y P E R + + +K N++ R ++ R
Sbjct: 24 VKILPLSESSLPPLVTTISGFYPP------ENTRFQ------LLKKSNQSNRDASLIG-R 70
Query: 117 DSSVDYVGTSYSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADK 176
V + + S + +C + V D++ + KIVP A + E + DK
Sbjct: 71 TERVQFEAKNQSTATVEANYC---LAVADKTGRVKKIVP--AKYLNTFERNILALQEKDK 125
Query: 177 DAGK--GEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKS-V 233
K G +S V +A L +GT+KS Q M E+ D+ ++ S V
Sbjct: 126 FLKKKHGTVSGTVM-EQRANLGLAFGTRKS--QKAIMEESANRVKAETLGDVKDQLVSNV 182
Query: 234 KINKEALESTTSDTVLN-----VPPYDANATTPQQAYPLDKIILKGEWD--FVQDIFNHV 286
+ EAL + +PP + A + + AY L+ II K E+ +++ + +
Sbjct: 183 QKATEALPTQEDIAAAQAQDRPIPPVNVGAESIEDAYKLEDIIPKEEFSAIYIKPLLENP 242
Query: 287 SA--GSEVISDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKDQHSMDGGAS 344
++++ + F+ R +L I++ +K+ A I YI+ L F G
Sbjct: 243 DERNWAKLLPYRHSLFINERFQRLLSIEEVDQKR--ARILYYISLLQAFLFSRRSVGNRE 300
Query: 345 AKQHRI---PKILHQKFLTSFSDAE---SKRLSDDKIHLLISYVLVLTLHADDFRTNPTD 398
+ ++ P+IL + F+ S ++S ++ +I Y+LVL L D++ T+
Sbjct: 301 TLRKKLADPPEILIDGLIKRFTQTTGIGSVQVSSREVDKIICYILVLCLIVDNYSTDVLT 360
Query: 399 IAKDLRMSEFKLRDHFEKLGCKLLR---------------EKNMLYATLPVPLQFPKAIQ 443
+A DL + K + F +GC+++ KN A L +PL+FPK +
Sbjct: 361 LANDLNVKTMKANELFRTVGCRIMAYTETQRMALGLNKTDAKNHKRAVLKIPLEFPKPRR 420
Query: 444 RRRR 447
R R
Sbjct: 421 GRAR 424
>sp|Q9GZS1|RPA49_HUMAN DNA-directed RNA polymerase I subunit RPA49 OS=Homo sapiens
GN=POLR1E PE=1 SV=2
Length = 481
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 162/346 (46%), Gaps = 50/346 (14%)
Query: 92 KVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYSGEAM-APQFCHYAVGVLDRSTQT 150
+ +Y N + N R + +++ + YVG ++ A+ C + VG+L++++
Sbjct: 102 RFTLYEN-KDSTNPRKRNQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQ 160
Query: 151 LKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEVQAN-----MKAMLDTRYGTKKSL 205
+++ ++F ++P SDV+ + E++ E Q M + ++ +GT K
Sbjct: 161 MEVYD---AELFNMQPLF--SDVS----VESELALESQTKTYREKMDSCIEA-FGTTKQK 210
Query: 206 R--QSKKMHALNKENDPESQKDLALKMKSVKINKEALESTTSDTV--------LNVPPYD 255
R +++M+ + E S K I+ + + + SD + L +PP
Sbjct: 211 RALNTRRMNRVGNE----SLNRAVAKAAETIIDTKGVTALVSDAIHNDLQDDSLYLPPCY 266
Query: 256 ANATTPQQAYPLDKIILKGEWDFVQ---DIFNHVSAGSEVI----SDAYPSFVCNRIHKL 308
+A P+ Y + ++ E++ +Q + F +V++ E++ +++ +FV I L
Sbjct: 267 DDAAKPEDVYKFEDLLSPAEYEALQSPSEAFRNVTS-EEILKMIEENSHCTFV---IEAL 322
Query: 309 REIQDDVE-KQTLASIFSYITHLVKFKDQHSMDGGASAKQHRIPKILHQKFLTSFS---- 363
+ + DVE + A ++ L+KF+ H + SA +P I++ K L F+
Sbjct: 323 KSLPSDVESRDRQARCIWFLDTLIKFR-AHRVVKRKSALGPGVPHIINTKLLKHFTCLTY 381
Query: 364 -DAESKRLSDDKIHLLIS-YVLVLTLHADDFRTNPTDIAKDLRMSE 407
+ + L D + I+ YV++L LH DF+ + T + +DL++SE
Sbjct: 382 NNGRLRNLISDSMKAKITAYVIILALHIHDFQIDLTVLQRDLKLSE 427
>sp|Q54FE8|RPA49_DICDI DNA-directed RNA polymerase I subunit rpa49 OS=Dictyostelium
discoideum GN=polr1e PE=3 SV=1
Length = 375
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 150/335 (44%), Gaps = 45/335 (13%)
Query: 127 YSGEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAE 186
Y E ++ YA+G+ D++T+ LKIVP KI + V G + + IS E
Sbjct: 62 YESEDKDSKYAKYAIGIFDKNTKQLKIVP---TKIQTMNQSVIGYTLTLDSSSV--ISRE 116
Query: 187 VQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLALKMKSV-KINKEALESTTS 245
+ + L +G+K + ++ +KM N EN D KS+ + E + ++
Sbjct: 117 ERYDKIKKLADSFGSKITKKKMQKMEMENVEN-----LDYEKTTKSIDAVKNELADIESN 171
Query: 246 DTVLNVPPYDANATTPQQAYPLDKI----ILKGEWDFVQDIFNHVSAGSEVISDAYPSFV 301
+ ++P +DA ++ Y ++ I I G Q + +S SE S P +
Sbjct: 172 EKPFDLPDFDAETNDVRKIYNIEAILPPRIFFGLNH--QPFLDIISKTSEAPS-YLPEYF 228
Query: 302 CNRIHKLREIQDD---VEKQTLASIFSYITHLVKFKDQHS--MDGGASAKQHRI------ 350
+++ + +I+D+ V L + Y L+K K H + G +++
Sbjct: 229 KDQLKRFEDIKDEEKVVYNCKLLTFMWYSMILMKSKGGHEPLIKEGCTSEVINFLVSIFG 288
Query: 351 PKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFR-TNPTDIAKDLRMSEFK 409
KI H+K+ S DDK+ + +Y+ + L +DF+ T+ +A+ L ++
Sbjct: 289 SKINHKKYNIS---------QDDKLKIY-NYLAIFALKLEDFQITDIKSLAQSLSLTSSS 338
Query: 410 LRDHFEKLGCKLLR---EKNMLYATLPVPLQFPKA 441
HF ++GCK++R EK + L PL+ PKA
Sbjct: 339 FEKHFTRVGCKVVRIGSEKRSV--RLEAPLKLPKA 371
>sp|Q8K202|RPA49_MOUSE DNA-directed RNA polymerase I subunit RPA49 OS=Mus musculus
GN=Polr1e PE=1 SV=2
Length = 482
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 107/223 (47%), Gaps = 30/223 (13%)
Query: 238 EALESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQ---DIFNHVSAGSEVI- 293
+A++ D VL +PP A+A P+ Y + I+ E+D ++ + F V+ SE I
Sbjct: 250 DAMQDDLQDGVLYLPPCYADAAKPEDVYRFEDILSPAEYDALESPSEAFRKVT--SEDIL 307
Query: 294 ----SDAYPSFVCNRIHKLREIQ-DDVEKQTLASIFSYITHLVKFKDQHSMDGGASAKQH 348
+++ S+V I L+ + D+V + A ++ L++F+ Q + G A
Sbjct: 308 KMIEENSHCSYV---IEMLKSLPIDEVHRNRQARSIWFLDALIRFRAQKVIKG-KRALGP 363
Query: 349 RIPKILHQKFLTSFS-----DAESKRLSDDKIHLLI-SYVLVLTLHADDFRTNPTDIAKD 402
IP I++ K L F+ + + L + I SY ++L LH ++F+ + T + KD
Sbjct: 364 GIPHIINTKLLKQFTCLTYNNGRLQNLISSSMRAKITSYAIILALHINNFQVDLTALQKD 423
Query: 403 LRMSE---------FKLRDHFEKLGCKLLREKNMLYATLPVPL 436
L++SE +L+ +K+ RE++ TL VPL
Sbjct: 424 LKLSEKRMIEIAKAMRLKISKQKVSLADGREESHRLGTLSVPL 466
>sp|Q6FMB3|PNO1_CANGA Pre-rRNA-processing protein PNO1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=PNO1 PE=3 SV=1
Length = 261
Score = 35.8 bits (81), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 17 QEQETEGPKKKNKKRKKDKANTTIDEQPEPEL------EPERVKAKVQFIPEQPNKAPPL 70
Q+ E E PKK KK+ A +DE +P +VK + + +P P++ PL
Sbjct: 41 QDMEEEAPKKS----KKEAAGVVLDESGKPRFGAAKDQATTKVKLESRKVPVPPHRMTPL 96
Query: 71 VGYFPSIYKPDVDHPDEEMR 90
+ IY P VDH ++R
Sbjct: 97 RNSWNKIYPPLVDHLKLQVR 116
>sp|B3DWT5|GATB_METI4 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
OS=Methylacidiphilum infernorum (isolate V4) GN=gatB
PE=3 SV=1
Length = 485
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 39/73 (53%)
Query: 168 VRGSDVADKDAGKGEISAEVQANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKDLA 227
+R +V+D D KG++ +V ++K + ++GTK ++ + A+ K E Q+ +
Sbjct: 186 LRYGNVSDCDMEKGQLRCDVNVSVKPAGEKKWGTKCEIKNLNSISAVRKALKYEIQRQIH 245
Query: 228 LKMKSVKINKEAL 240
+ KI++E L
Sbjct: 246 VLSTGSKISQETL 258
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,307,637
Number of Sequences: 539616
Number of extensions: 7123097
Number of successful extensions: 38907
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 289
Number of HSP's that attempted gapping in prelim test: 34359
Number of HSP's gapped (non-prelim): 3667
length of query: 447
length of database: 191,569,459
effective HSP length: 121
effective length of query: 326
effective length of database: 126,275,923
effective search space: 41165950898
effective search space used: 41165950898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)