Query 013236
Match_columns 447
No_of_seqs 153 out of 224
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 06:46:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013236.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013236hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bl0a1 a.4.1.8 (A:9-62) MarA 60.5 5.6 0.00041 26.3 4.4 33 388-420 12-47 (54)
2 d1aisb2 a.74.1.2 (B:1206-1300) 54.6 12 0.00087 27.6 6.0 43 375-417 42-84 (95)
3 d1d5ya1 a.4.1.8 (A:3-56) Rob t 49.3 8.8 0.00064 25.2 3.9 31 390-420 14-47 (54)
4 d1aisb1 a.74.1.2 (B:1108-1205) 48.8 16 0.0012 26.9 5.9 68 350-417 18-86 (98)
5 d1vola1 a.74.1.2 (A:113-207) T 48.2 13 0.00098 27.2 5.3 69 349-417 17-86 (95)
6 d1jjcb2 a.6.1.1 (B:400-474) Do 40.9 14 0.0011 26.2 4.2 40 394-435 7-48 (75)
7 d1nd9a_ a.6.1.6 (A:) N-termina 38.4 12 0.00088 24.8 3.1 27 394-420 3-29 (49)
8 d2isya1 a.4.5.24 (A:2-64) Iron 35.7 25 0.0018 24.1 4.6 44 370-417 3-47 (63)
9 d1yioa1 a.4.6.2 (A:131-200) Re 35.4 22 0.0016 24.7 4.4 32 384-417 20-51 (70)
10 d2cfxa1 a.4.5.32 (A:1-63) Tran 35.3 18 0.0013 24.7 3.8 33 385-417 11-43 (63)
11 d2o3fa1 a.4.1.20 (A:1-83) Puta 34.0 14 0.001 26.8 3.2 47 370-420 16-63 (83)
12 d1z05a1 a.4.5.63 (A:10-80) Tra 31.8 26 0.0019 24.1 4.3 38 380-417 7-44 (71)
13 d1biaa1 a.4.5.1 (A:1-63) Bioti 31.2 31 0.0022 23.4 4.5 39 385-423 11-52 (63)
14 d1fsea_ a.4.6.2 (A:) Germinati 30.6 26 0.0019 23.8 4.1 32 384-417 12-43 (67)
15 d1a04a1 a.4.6.2 (A:150-216) Ni 29.7 27 0.002 23.8 4.1 35 384-420 14-52 (67)
16 d1pp7u_ a.4.5.44 (U:) 39 kda i 29.2 63 0.0046 24.8 6.5 72 348-423 8-92 (114)
17 d2ev0a1 a.4.5.24 (A:2-62) Mang 29.1 21 0.0015 24.3 3.3 29 389-417 17-45 (61)
18 d1i1ga1 a.4.5.32 (A:2-61) LprA 29.0 26 0.0019 23.5 3.7 33 385-417 9-41 (60)
19 d2cyya1 a.4.5.32 (A:5-64) Puta 28.2 27 0.002 23.3 3.7 33 385-417 9-41 (60)
20 d1vola2 a.74.1.2 (A:208-316) T 27.6 57 0.0041 24.2 6.1 44 374-417 42-85 (109)
21 d1r1ta_ a.4.5.5 (A:) SmtB repr 26.4 82 0.006 23.0 6.7 73 349-433 4-80 (98)
22 d1l3la1 a.4.6.2 (A:170-234) Qu 24.3 41 0.003 22.7 4.2 35 384-420 12-50 (65)
23 d2cg4a1 a.4.5.32 (A:4-66) Regu 22.8 39 0.0028 22.7 3.7 34 384-417 10-43 (63)
24 d1z6ra1 a.4.5.63 (A:12-81) Mlc 22.6 82 0.006 21.3 5.6 39 379-417 5-43 (70)
25 d1v7ba1 a.4.1.9 (A:1-74) Trans 22.4 56 0.0041 22.2 4.7 44 371-415 2-46 (74)
26 d1x9na2 b.40.4.6 (A:754-901) D 20.2 30 0.0022 27.5 3.0 19 135-153 21-39 (148)
No 1
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=60.47 E-value=5.6 Score=26.27 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=26.7
Q ss_pred hcCCCc--cCcHhHHHHhCCCHHHHHHHHHHh-CCE
Q 013236 388 HADDFR--TNPTDIAKDLRMSEFKLRDHFEKL-GCK 420 (447)
Q Consensus 388 ~ldnf~--vd~~~La~dLkl~~~kl~~~fr~L-Gc~ 420 (447)
+-+||. +++.+||+.++|++..+..+|+.. |+.
T Consensus 12 I~~~~~~~~tl~~lA~~~~~s~~~l~r~Fk~~~g~t 47 (54)
T d1bl0a1 12 IEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHS 47 (54)
T ss_dssp HHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHSSC
T ss_pred HHhccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 345555 788999999999999999999864 543
No 2
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=54.64 E-value=12 Score=27.59 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhcCCCccCcHhHHHHhCCCHHHHHHHHHHh
Q 013236 375 IHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKL 417 (447)
Q Consensus 375 ~dkLl~yilvLaL~ldnf~vd~~~La~dLkl~~~kl~~~fr~L 417 (447)
.+-+.+=++-+++...|....+.+++.-.+++..+|...|+.|
T Consensus 42 p~~vaAA~iY~a~r~~~~~~t~~eIa~~~~vs~~tI~~~yk~l 84 (95)
T d1aisb2 42 PAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 84 (95)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4456777777888899999999999999999999999888876
No 3
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=49.34 E-value=8.8 Score=25.24 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=25.6
Q ss_pred CCCc--cCcHhHHHHhCCCHHHHHHHHHH-hCCE
Q 013236 390 DDFR--TNPTDIAKDLRMSEFKLRDHFEK-LGCK 420 (447)
Q Consensus 390 dnf~--vd~~~La~dLkl~~~kl~~~fr~-LGc~ 420 (447)
+|+. +.+++||+.++|++..+..+|+. .|+.
T Consensus 14 ~~~~~~itl~~lA~~~~~S~~~l~r~Fk~~~g~t 47 (54)
T d1d5ya1 14 GHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHA 47 (54)
T ss_dssp TTSSSSCCCHHHHTTTSSCHHHHHHHHHHHHSSC
T ss_pred HccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 5555 78899999999999999999985 4543
No 4
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=48.83 E-value=16 Score=26.94 Aligned_cols=68 Identities=9% Similarity=0.168 Sum_probs=49.7
Q ss_pred CCHHHHHHHHhhcccC-CCCccCHHHHHHHHHHHHHHHHhcCCCccCcHhHHHHhCCCHHHHHHHHHHh
Q 013236 350 IPKILHQKFLTSFSDA-ESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKL 417 (447)
Q Consensus 350 ~p~~v~~~il~~Ft~~-~~~~~s~~~~dkLl~yilvLaL~ldnf~vd~~~La~dLkl~~~kl~~~fr~L 417 (447)
+|+.|.+.-..-|-.. ..+...-....-+++=++-+|+...|......++|.-+++++.++...++.|
T Consensus 18 L~~~i~~~A~~i~k~~~~~~~~~g~~~~~iaaA~iY~Acr~~~~~~t~~eIa~~~~is~~ti~k~yk~i 86 (98)
T d1aisb1 18 LPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYRFI 86 (98)
T ss_dssp CCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5777777666555321 1112222334567777888888899999999999999999999999998876
No 5
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.22 E-value=13 Score=27.23 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHhhcccC-CCCccCHHHHHHHHHHHHHHHHhcCCCccCcHhHHHHhCCCHHHHHHHHHHh
Q 013236 349 RIPKILHQKFLTSFSDA-ESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKL 417 (447)
Q Consensus 349 ~~p~~v~~~il~~Ft~~-~~~~~s~~~~dkLl~yilvLaL~ldnf~vd~~~La~dLkl~~~kl~~~fr~L 417 (447)
++|+.+.+.-..-|... ..+...-....-+++=++-+++...|....+.+++..++++...|...|+.|
T Consensus 17 ~L~~~i~~~A~~i~~~~~~~~~~~Gr~~~~i~AA~iY~acr~~~~p~t~~eIa~~~~i~~~~i~k~~k~i 86 (95)
T d1vola1 17 NLPRNKVDRTNNLFRQAYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLI 86 (95)
T ss_dssp TCCHHHHHHHHHHHHHHHHTCCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTTCSCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 46777777766666431 1112222344667888888888999999999999999999999998888765
No 6
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=40.88 E-value=14 Score=26.23 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=29.5
Q ss_pred cCcHhHHHHhC--CCHHHHHHHHHHhCCEEeecCCeEEEEEcCC
Q 013236 394 TNPTDIAKDLR--MSEFKLRDHFEKLGCKLLREKNMLYATLPVP 435 (447)
Q Consensus 394 vd~~~La~dLk--l~~~kl~~~fr~LGc~v~k~~~~kia~LkvP 435 (447)
++.+.+.+-|| ++..++.++++.|||.+...+.. .+..+|
T Consensus 7 l~~~~i~~~lG~~i~~~~i~~~L~~Lg~~~~~~~~~--~~V~vP 48 (75)
T d1jjcb2 7 FRPEYANRLLGTSYPEAEQIAILKRLGCRVEGEGPT--YRVTPP 48 (75)
T ss_dssp ECHHHHHHHHTCCCCHHHHHHHHHHTTCEEECSSSS--EEEECC
T ss_pred ECHHHHHHHhCCCCCHHHHHHHHHHcCCceEecCCc--EEEecc
Confidence 56677777776 88899999999999998764332 333455
No 7
>d1nd9a_ a.6.1.6 (A:) N-terminal subdomain of bacterial translation initiation factor IF2 {Escherichia coli [TaxId: 562]}
Probab=38.44 E-value=12 Score=24.77 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=24.9
Q ss_pred cCcHhHHHHhCCCHHHHHHHHHHhCCE
Q 013236 394 TNPTDIAKDLRMSEFKLRDHFEKLGCK 420 (447)
Q Consensus 394 vd~~~La~dLkl~~~kl~~~fr~LGc~ 420 (447)
+.+..||.++++++.+|.+-|++.|-.
T Consensus 3 vTVk~lA~~v~~~vd~Ll~Ql~~AGl~ 29 (49)
T d1nd9a_ 3 VTIKTLAAERQTSVERLVQQFADAGIR 29 (49)
T ss_dssp ECTTHHHHHHSSSHHHHHHHHHHHTSC
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHcCCC
Confidence 457899999999999999999999985
No 8
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=35.65 E-value=25 Score=24.14 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=31.8
Q ss_pred cCHHHHHHHHHHHHHHH-HhcCCCccCcHhHHHHhCCCHHHHHHHHHHh
Q 013236 370 LSDDKIHLLISYVLVLT-LHADDFRTNPTDIAKDLRMSEFKLRDHFEKL 417 (447)
Q Consensus 370 ~s~~~~dkLl~yilvLa-L~ldnf~vd~~~La~dLkl~~~kl~~~fr~L 417 (447)
+|...+| |+-++. |.-++-.+-..+||+.|++++..+..+.+.|
T Consensus 3 ls~s~Ed----YL~~I~~L~~~~~~v~~~~iA~~L~vs~~SVt~mvkrL 47 (63)
T d2isya1 3 LVDTTEM----YLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRM 47 (63)
T ss_dssp TSSHHHH----HHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcHHHHH----HHHHHHHHHhcCCCCcHHHHHHHhCCCchhHHHHHHHH
Confidence 4555555 443333 3445666899999999999999999888766
No 9
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=35.42 E-value=22 Score=24.70 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=25.4
Q ss_pred HHHHhcCCCccCcHhHHHHhCCCHHHHHHHHHHh
Q 013236 384 VLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKL 417 (447)
Q Consensus 384 vLaL~ldnf~vd~~~La~dLkl~~~kl~~~fr~L 417 (447)
||.|.+++++ ...+|..|++++..+..|.+.+
T Consensus 20 vl~~l~~G~s--~~eIA~~l~iS~~TV~~~~~~i 51 (70)
T d1yioa1 20 VLQLTIRGLM--NKQIAGELGIAEVTVKVHRHNI 51 (70)
T ss_dssp HHHHHTTTCC--HHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHcCCC--HHHHHHHHCCCHHHHHHHHHHH
Confidence 5677778875 4689999999999988776544
No 10
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=35.27 E-value=18 Score=24.68 Aligned_cols=33 Identities=12% Similarity=0.285 Sum_probs=27.4
Q ss_pred HHHhcCCCccCcHhHHHHhCCCHHHHHHHHHHh
Q 013236 385 LTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKL 417 (447)
Q Consensus 385 LaL~ldnf~vd~~~La~dLkl~~~kl~~~fr~L 417 (447)
|.+.-.|..+....||+.|++++..+....+.|
T Consensus 11 L~~L~~n~r~s~~~iA~~lgis~~tv~~Ri~~L 43 (63)
T d2cfxa1 11 IEELKKDSRLSMRELGRKIKLSPPSVTERVRQL 43 (63)
T ss_dssp HHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344446889999999999999999999887755
No 11
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=34.02 E-value=14 Score=26.83 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=33.7
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCCc-cCcHhHHHHhCCCHHHHHHHHHHhCCE
Q 013236 370 LSDDKIHLLISYVLVLTLHADDFR-TNPTDIAKDLRMSEFKLRDHFEKLGCK 420 (447)
Q Consensus 370 ~s~~~~dkLl~yilvLaL~ldnf~-vd~~~La~dLkl~~~kl~~~fr~LGc~ 420 (447)
+|+..+ ++.-||+- |.+.+. ..+.+||+..+++++.+..+++.||+.
T Consensus 16 Ls~~e~-~ia~yil~---~~~~~~~~si~~lA~~~~vS~sTi~Rf~kklG~~ 63 (83)
T d2o3fa1 16 LPPSER-KLADYILA---HPHKAIESTVNEISALANSSDAAVIRLCKSLGLK 63 (83)
T ss_dssp SCHHHH-HHHHHHHH---CHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCS
T ss_pred CCHHHH-HHHHHHHc---CHHHHHHccHHHHHHHHCCCHHHHHHHHHHhCCC
Confidence 555444 55555543 222222 477999999999999999999999984
No 12
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=31.83 E-value=26 Score=24.14 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCCccCcHhHHHHhCCCHHHHHHHHHHh
Q 013236 380 SYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKL 417 (447)
Q Consensus 380 ~yilvLaL~ldnf~vd~~~La~dLkl~~~kl~~~fr~L 417 (447)
+...+|.++..+-.+.-.+||+.++|++..+..+...|
T Consensus 7 N~~~Il~~l~~~g~~sr~eLa~~~glS~~Tv~~~l~~L 44 (71)
T d1z05a1 7 NAGRVYKLIDQKGPISRIDLSKESELAPASITKITREL 44 (71)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 33455666666667888999999999999999888766
No 13
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=31.19 E-value=31 Score=23.39 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=29.0
Q ss_pred HHHhcCCCccCcHhHHHHhCCCHHHHHHHHHHh---CCEEee
Q 013236 385 LTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKL---GCKLLR 423 (447)
Q Consensus 385 LaL~ldnf~vd~~~La~dLkl~~~kl~~~fr~L---Gc~v~k 423 (447)
|.+.-++-.+....||+.|+++...+..+.+.| |..|.+
T Consensus 11 L~~L~~~~~~s~~eLa~~l~vS~~ti~r~i~~L~~~G~~I~~ 52 (63)
T d1biaa1 11 IALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFT 52 (63)
T ss_dssp HHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHHCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCCcEEE
Confidence 334456666899999999999999998776554 655544
No 14
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=30.63 E-value=26 Score=23.85 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=24.9
Q ss_pred HHHHhcCCCccCcHhHHHHhCCCHHHHHHHHHHh
Q 013236 384 VLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKL 417 (447)
Q Consensus 384 vLaL~ldnf~vd~~~La~dLkl~~~kl~~~fr~L 417 (447)
||.|.+.+++ ...+|..|++++..+..|.+.+
T Consensus 12 vl~l~~~G~s--~~eIA~~L~is~~TV~~~~~~i 43 (67)
T d1fsea_ 12 VFELLVQDKT--TKEIASELFISEKTVRNHISNA 43 (67)
T ss_dssp HHHHHTTTCC--HHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHccCC--HHHHHHHHCCCHHHHHHHHHHH
Confidence 5666777774 5889999999999988776543
No 15
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}
Probab=29.71 E-value=27 Score=23.83 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=25.8
Q ss_pred HHHHhcCCCccCcHhHHHHhCCCHHHHHHHHH----HhCCE
Q 013236 384 VLTLHADDFRTNPTDIAKDLRMSEFKLRDHFE----KLGCK 420 (447)
Q Consensus 384 vLaL~ldnf~vd~~~La~dLkl~~~kl~~~fr----~LGc~ 420 (447)
||.|.+.+++ ...+|..|++++..+..|.+ -|||.
T Consensus 14 vl~ll~~G~s--~~eIA~~l~iS~~TV~~~~~~i~~Klgv~ 52 (67)
T d1a04a1 14 ILKLIAQGLP--NKMIARRLDITESTVKVHVKHMLKKMKLK 52 (67)
T ss_dssp HHHHHHTTCC--HHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCC--HHHHHHHHCCCHHHHHHHHHHHHHHhCCC
Confidence 4566667764 48999999999998877654 45553
No 16
>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]}
Probab=29.19 E-value=63 Score=24.83 Aligned_cols=72 Identities=15% Similarity=0.164 Sum_probs=50.1
Q ss_pred CCCCHHHHHHHHhhcccCCCCccCHHHHHHHHHHHHHHHHh-----------cC--CCccCcHhHHHHhCCCHHHHHHHH
Q 013236 348 HRIPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLH-----------AD--DFRTNPTDIAKDLRMSEFKLRDHF 414 (447)
Q Consensus 348 ~~~p~~v~~~il~~Ft~~~~~~~s~~~~dkLl~yilvLaL~-----------ld--nf~vd~~~La~dLkl~~~kl~~~f 414 (447)
..+|+.|++.|+++=+-+.+ +.+ --||..=+....-| +| .|.|+-..+|+-|++.+..|..=|
T Consensus 8 ~~ip~~i~~~l~kr~s~~~~---~rF-~~KL~naL~~t~~~P~~~~~iGv~Wi~d~~f~Vnk~~fa~lLgiK~ntlN~Nf 83 (114)
T d1pp7u_ 8 SRLPPEIVAALKRKSSRDPN---SRF-PRKLHMLLTYLASNPQLEEEIGLSWISDTEFKMKKKNVALVMGIKLNTLNVNL 83 (114)
T ss_dssp TTSCHHHHHHHHSCCCSSGG---GSH-HHHHHHHHHHHTTCHHHHHHHTEEESSSSCEEECHHHHHHHHTCCHHHHHHHH
T ss_pred hhCCHHHHHHHHHhhCCCcc---CCc-hHHHHHHHHHHHhChhhhhccceEEecCCEEEEehHHHHHHHCCChhhhcCcc
Confidence 56999999999987543211 112 23333322222222 43 477999999999999999999999
Q ss_pred HHhCCEEee
Q 013236 415 EKLGCKLLR 423 (447)
Q Consensus 415 r~LGc~v~k 423 (447)
+.+|-....
T Consensus 84 r~~gF~q~~ 92 (114)
T d1pp7u_ 84 RDLAFEQLQ 92 (114)
T ss_dssp HHTTCEEEE
T ss_pred cccCceeee
Confidence 999998754
No 17
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=29.09 E-value=21 Score=24.31 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=24.8
Q ss_pred cCCCccCcHhHHHHhCCCHHHHHHHHHHh
Q 013236 389 ADDFRTNPTDIAKDLRMSEFKLRDHFEKL 417 (447)
Q Consensus 389 ldnf~vd~~~La~dLkl~~~kl~~~fr~L 417 (447)
-++-.+-..+||+.|++++..+..+.+.|
T Consensus 17 ~~~~~v~~~~iA~~L~vs~~SVs~mikrL 45 (61)
T d2ev0a1 17 EEKGYARVSDIAEALAVHPSSVTKMVQKL 45 (61)
T ss_dssp HHHSSCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred hcCCCccHHHHHHHhCCCchhHHHHHHHH
Confidence 35567899999999999999998888766
No 18
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=28.97 E-value=26 Score=23.54 Aligned_cols=33 Identities=39% Similarity=0.473 Sum_probs=27.2
Q ss_pred HHHhcCCCccCcHhHHHHhCCCHHHHHHHHHHh
Q 013236 385 LTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKL 417 (447)
Q Consensus 385 LaL~ldnf~vd~~~La~dLkl~~~kl~~~fr~L 417 (447)
|.+.-.|.......||+.+++++..+....+.|
T Consensus 9 l~~L~~n~r~s~~~lA~~~gls~~~v~~Ri~~L 41 (60)
T d1i1ga1 9 LEILEKDARTPFTEIAKKLGISETAVRKRVKAL 41 (60)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344446889999999999999999998887755
No 19
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=28.22 E-value=27 Score=23.33 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=27.7
Q ss_pred HHHhcCCCccCcHhHHHHhCCCHHHHHHHHHHh
Q 013236 385 LTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKL 417 (447)
Q Consensus 385 LaL~ldnf~vd~~~La~dLkl~~~kl~~~fr~L 417 (447)
|.+.-.|.......||+.|+++...+....+.|
T Consensus 9 l~~L~~n~r~s~~eiA~~l~ls~~~v~~Ri~~L 41 (60)
T d2cyya1 9 IKILQNDGKAPLREISKITGLAESTIHERIRKL 41 (60)
T ss_dssp HHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 444556899999999999999999998887765
No 20
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.58 E-value=57 Score=24.21 Aligned_cols=44 Identities=7% Similarity=0.159 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHhcCCCccCcHhHHHHhCCCHHHHHHHHHHh
Q 013236 374 KIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKL 417 (447)
Q Consensus 374 ~~dkLl~yilvLaL~ldnf~vd~~~La~dLkl~~~kl~~~fr~L 417 (447)
...-+.+=++-+++...|......++++-.+++..++...|+.|
T Consensus 42 ~p~~iaAa~iY~a~r~~~~~~t~~eIa~~~~vs~~tI~k~yk~l 85 (109)
T d1vola2 42 SPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLI 85 (109)
T ss_dssp CHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 33445555666788889999999999999999999999999988
No 21
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}
Probab=26.39 E-value=82 Score=22.96 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHhhcccCCCCccCHHHHHHHHHHHHHHHHhcCCCccCcHhHHHHhCCCHHHHHHHHHHh---CCEEe-ec
Q 013236 349 RIPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKL---GCKLL-RE 424 (447)
Q Consensus 349 ~~p~~v~~~il~~Ft~~~~~~~s~~~~dkLl~yilvLaL~ldnf~vd~~~La~dLkl~~~kl~~~fr~L---Gc~v~-k~ 424 (447)
.+++...+.+-+-|-. ++...+-+++.++ .+ -...+.+|++.|+++.+.+..|.+.| |.... +.
T Consensus 4 ~~~pe~~~~la~~~ka-----L~~p~Rl~Il~~L------~~-~~~~v~ela~~l~is~stvS~HL~~L~~aglV~~~r~ 71 (98)
T d1r1ta_ 4 AIAPEVAQSLAEFFAV-----LADPNRLRLLSLL------AR-SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 71 (98)
T ss_dssp CCCHHHHHHHHHHHHH-----HCCHHHHHHHHHH------TT-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCHHHHHHHHHHHHH-----hCCHHHHHHHHHH------Hc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEE
Confidence 4566666777666653 3334444443322 23 35778999999999999999998876 55443 23
Q ss_pred CCeEEEEEc
Q 013236 425 KNMLYATLP 433 (447)
Q Consensus 425 ~~~kia~Lk 433 (447)
++..+.+|.
T Consensus 72 G~~~~Y~l~ 80 (98)
T d1r1ta_ 72 GRHVYYQLQ 80 (98)
T ss_dssp TTEEEEEES
T ss_pred CCEEEEEEC
Confidence 455555554
No 22
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=24.25 E-value=41 Score=22.65 Aligned_cols=35 Identities=14% Similarity=0.063 Sum_probs=25.6
Q ss_pred HHHHhcCCCccCcHhHHHHhCCCHHHHHHHHH----HhCCE
Q 013236 384 VLTLHADDFRTNPTDIAKDLRMSEFKLRDHFE----KLGCK 420 (447)
Q Consensus 384 vLaL~ldnf~vd~~~La~dLkl~~~kl~~~fr----~LGc~ 420 (447)
+|.|...+++ ...+|..|++++..+..|.+ -|||.
T Consensus 12 vl~l~~~G~s--~~eIA~~l~iS~~TV~~~~~~i~~Klgv~ 50 (65)
T d1l3la1 12 YLRWIAVGKT--MEEIADVEGVKYNSVRVKLREAMKRFDVR 50 (65)
T ss_dssp HHHHHTTTCC--HHHHHHHHTCCHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHhcCC--HHHHHHHHCCCHHHHHHHHHHHHHHcCCC
Confidence 4566666655 48999999999999887654 45553
No 23
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=22.80 E-value=39 Score=22.73 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=28.0
Q ss_pred HHHHhcCCCccCcHhHHHHhCCCHHHHHHHHHHh
Q 013236 384 VLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKL 417 (447)
Q Consensus 384 vLaL~ldnf~vd~~~La~dLkl~~~kl~~~fr~L 417 (447)
+|.+.-+|-......||+.+++++..+....+.|
T Consensus 10 IL~~L~~~~r~s~~eiA~~l~ls~~~v~~Ri~rL 43 (63)
T d2cg4a1 10 ILEALMGNARTAYAELAKQFGVSPETIHVRVEKM 43 (63)
T ss_dssp HHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3445557888999999999999999998877765
No 24
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=22.60 E-value=82 Score=21.35 Aligned_cols=39 Identities=8% Similarity=0.026 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCCccCcHhHHHHhCCCHHHHHHHHHHh
Q 013236 379 ISYVLVLTLHADDFRTNPTDIAKDLRMSEFKLRDHFEKL 417 (447)
Q Consensus 379 l~yilvLaL~ldnf~vd~~~La~dLkl~~~kl~~~fr~L 417 (447)
++...+|-++..+-.+.-.+||+.++|+...+..+..+|
T Consensus 5 ~N~~~Il~~i~~~g~~sr~eLa~~~gLS~~Tvs~iv~~L 43 (70)
T d1z6ra1 5 TNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEM 43 (70)
T ss_dssp HHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345567777778888999999999999999999888765
No 25
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=22.44 E-value=56 Score=22.17 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCc-cCcHhHHHHhCCCHHHHHHHHH
Q 013236 371 SDDKIHLLISYVLVLTLHADDFR-TNPTDIAKDLRMSEFKLRDHFE 415 (447)
Q Consensus 371 s~~~~dkLl~yilvLaL~ldnf~-vd~~~La~dLkl~~~kl~~~fr 415 (447)
....++.|+.-.+-|... .+|. +-+..||+..++++..+=.||.
T Consensus 2 r~~~r~~Il~aa~~l~~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~ 46 (74)
T d1v7ba1 2 RTSKKEMILRTAIDYIGE-YSLETLSYDSLAEATGLSKSGLIYHFP 46 (74)
T ss_dssp CSCHHHHHHHHHHHHHHH-SCSTTCCHHHHHHHHCSCHHHHHHHCS
T ss_pred cHHHHHHHHHHHHHHHHH-hCccccCHHHHHHHhCcCcchHhhhCC
Confidence 344567777654444333 4555 8999999999999999888774
No 26
>d1x9na2 b.40.4.6 (A:754-901) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.24 E-value=30 Score=27.48 Aligned_cols=19 Identities=11% Similarity=0.384 Sum_probs=15.3
Q ss_pred cCCceEEEEEeCCCCcEEE
Q 013236 135 QFCHYAVGVLDRSTQTLKI 153 (447)
Q Consensus 135 ~~~~Y~VgV~dk~T~~l~l 153 (447)
-...|+||+||..+|++..
T Consensus 21 ~~~slllg~~~~~~~~l~~ 39 (148)
T d1x9na2 21 RYGGFLLASYDEDSEELQA 39 (148)
T ss_dssp SEEEEEEEEEETTTTEEEE
T ss_pred ceeeEEEEEEcCCCCEEEE
Confidence 3577999999999987554
Done!