Query 013239
Match_columns 447
No_of_seqs 310 out of 964
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 01:49:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013239.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013239hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 4.3E-56 9.3E-61 437.7 24.6 277 121-438 33-341 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 2.6E-52 5.6E-57 394.8 13.9 189 168-364 3-200 (200)
3 smart00656 Amb_all Amb_all dom 100.0 2.2E-48 4.8E-53 365.5 21.7 171 180-367 10-189 (190)
4 TIGR03805 beta_helix_1 paralle 98.9 5.2E-07 1.1E-11 91.5 22.3 238 156-410 1-286 (314)
5 PF14592 Chondroitinas_B: Chon 98.1 5.1E-05 1.1E-09 80.1 14.2 183 156-343 7-234 (425)
6 PLN02218 polygalacturonase ADP 98.1 0.00017 3.6E-09 76.6 17.6 138 202-364 215-356 (431)
7 PF13229 Beta_helix: Right han 98.0 7.8E-05 1.7E-09 64.9 11.5 133 204-368 2-138 (158)
8 PLN02188 polygalacturonase/gly 97.9 0.00053 1.2E-08 72.3 17.7 125 202-347 178-308 (404)
9 PLN02155 polygalacturonase 97.9 0.00053 1.1E-08 72.1 17.1 138 202-364 168-310 (394)
10 PLN03003 Probable polygalactur 97.8 0.00062 1.3E-08 72.8 16.6 121 205-346 164-288 (456)
11 PF00295 Glyco_hydro_28: Glyco 97.8 0.00046 9.9E-09 70.4 14.3 153 162-349 89-245 (326)
12 PLN02793 Probable polygalactur 97.8 0.001 2.2E-08 70.9 16.9 108 202-330 200-308 (443)
13 PLN02218 polygalacturonase ADP 97.6 0.003 6.6E-08 67.2 18.3 119 165-319 147-284 (431)
14 PF04431 Pec_lyase_N: Pectate 97.6 3.1E-05 6.8E-10 60.3 2.4 31 55-85 13-43 (56)
15 TIGR03805 beta_helix_1 paralle 97.6 0.0021 4.6E-08 65.5 16.2 160 185-349 62-247 (314)
16 PLN03010 polygalacturonase 97.6 0.0044 9.5E-08 65.6 19.0 136 205-365 183-322 (409)
17 PF05048 NosD: Periplasmic cop 97.5 0.0093 2E-07 57.2 18.3 107 204-343 59-167 (236)
18 PF13229 Beta_helix: Right han 97.5 0.0016 3.5E-08 56.6 11.6 131 202-364 23-158 (158)
19 PF01696 Adeno_E1B_55K: Adenov 97.5 0.011 2.4E-07 62.0 19.1 175 156-369 57-242 (386)
20 PF12708 Pectate_lyase_3: Pect 97.3 0.0057 1.2E-07 56.8 14.0 39 156-195 21-62 (225)
21 PLN03003 Probable polygalactur 97.3 0.004 8.7E-08 66.7 14.6 119 165-319 104-230 (456)
22 TIGR03808 RR_plus_rpt_1 twin-a 97.3 0.011 2.5E-07 63.0 17.4 100 155-271 56-161 (455)
23 PLN02155 polygalacturonase 97.3 0.0084 1.8E-07 63.2 16.0 117 166-319 107-237 (394)
24 PLN03010 polygalacturonase 97.3 0.02 4.2E-07 60.8 18.5 150 188-370 147-313 (409)
25 PF00295 Glyco_hydro_28: Glyco 97.3 0.0032 6.8E-08 64.3 12.1 108 182-319 62-184 (326)
26 PF05048 NosD: Periplasmic cop 97.2 0.018 3.9E-07 55.2 15.9 129 203-365 36-166 (236)
27 PLN02793 Probable polygalactur 96.9 0.023 4.9E-07 60.9 15.1 118 166-319 135-269 (443)
28 TIGR03808 RR_plus_rpt_1 twin-a 96.8 0.066 1.4E-06 57.4 16.9 158 188-366 122-332 (455)
29 PLN02188 polygalacturonase/gly 96.7 0.03 6.5E-07 59.3 14.3 117 166-318 114-246 (404)
30 PLN02480 Probable pectinestera 96.7 0.036 7.9E-07 57.5 14.3 119 155-291 62-198 (343)
31 COG5434 PGU1 Endopygalactoruna 96.3 0.082 1.8E-06 58.0 14.5 104 203-330 262-376 (542)
32 PLN02197 pectinesterase 96.2 0.21 4.5E-06 55.4 17.2 137 108-273 244-410 (588)
33 PF07602 DUF1565: Protein of u 96.0 0.21 4.6E-06 49.8 14.4 186 155-365 17-240 (246)
34 smart00656 Amb_all Amb_all dom 95.9 0.4 8.6E-06 45.6 15.5 137 184-343 43-188 (190)
35 COG3420 NosD Nitrous oxidase a 95.1 0.55 1.2E-05 49.0 14.1 93 182-290 100-192 (408)
36 PLN02416 probable pectinestera 94.5 0.35 7.5E-06 53.3 11.6 113 155-289 244-376 (541)
37 PLN02176 putative pectinestera 94.3 0.7 1.5E-05 48.2 12.9 120 155-291 53-189 (340)
38 PLN02708 Probable pectinestera 93.7 0.67 1.4E-05 51.2 11.9 115 155-289 255-409 (553)
39 PLN02497 probable pectinestera 93.6 1.6 3.5E-05 45.3 13.9 150 103-290 13-182 (331)
40 PLN02506 putative pectinestera 93.5 0.64 1.4E-05 51.2 11.3 114 155-290 246-379 (537)
41 PLN02432 putative pectinestera 93.5 0.92 2E-05 46.4 11.7 121 155-300 25-162 (293)
42 PLN02682 pectinesterase family 93.5 1.3 2.8E-05 46.7 13.0 119 155-291 84-229 (369)
43 PLN02170 probable pectinestera 93.4 0.77 1.7E-05 50.4 11.7 100 155-273 239-359 (529)
44 PLN02304 probable pectinestera 93.4 1.5 3.2E-05 46.5 13.3 127 155-300 89-236 (379)
45 PLN03043 Probable pectinestera 93.3 2.1 4.6E-05 47.2 14.9 115 155-289 237-392 (538)
46 PLN02313 Pectinesterase/pectin 93.0 2 4.4E-05 47.8 14.3 115 155-289 289-441 (587)
47 PLN02201 probable pectinestera 92.9 1.1 2.5E-05 49.1 12.1 100 155-273 220-339 (520)
48 PF14592 Chondroitinas_B: Chon 92.8 0.96 2.1E-05 48.4 11.0 115 245-370 183-325 (425)
49 PLN02488 probable pectinestera 92.7 1.2 2.6E-05 48.7 11.9 100 155-273 211-330 (509)
50 PLN02995 Probable pectinestera 92.7 1.4 3E-05 48.7 12.4 113 155-290 237-372 (539)
51 PLN02773 pectinesterase 92.6 1.6 3.4E-05 45.2 12.0 113 155-290 19-162 (317)
52 PF00544 Pec_lyase_C: Pectate 92.5 3 6.4E-05 40.0 13.1 117 201-341 74-200 (200)
53 PLN02301 pectinesterase/pectin 92.4 1.2 2.5E-05 49.3 11.4 100 155-273 250-369 (548)
54 PLN02314 pectinesterase 92.3 1.2 2.5E-05 49.6 11.4 98 155-272 292-410 (586)
55 PLN02916 pectinesterase family 92.2 1.6 3.6E-05 47.7 12.2 100 155-273 201-323 (502)
56 PLN02745 Putative pectinestera 92.2 1.5 3.3E-05 48.8 12.1 113 155-290 299-432 (596)
57 PLN02484 probable pectinestera 92.1 1.4 3.1E-05 49.0 11.7 101 155-273 286-406 (587)
58 PLN02990 Probable pectinestera 92.1 1.8 3.9E-05 48.1 12.4 98 155-272 273-392 (572)
59 PLN02217 probable pectinestera 92.1 1.4 3E-05 49.8 11.6 144 155-319 264-450 (670)
60 PLN02933 Probable pectinestera 91.9 1.8 3.9E-05 47.7 12.0 99 155-273 232-351 (530)
61 PLN02665 pectinesterase family 91.6 4.6 9.9E-05 42.6 14.2 119 155-290 82-219 (366)
62 PLN02634 probable pectinestera 91.5 3.5 7.6E-05 43.4 13.2 119 155-291 70-215 (359)
63 PLN02468 putative pectinestera 91.5 1.7 3.7E-05 48.2 11.4 98 155-272 272-390 (565)
64 PLN02713 Probable pectinestera 90.9 2.1 4.6E-05 47.4 11.5 99 155-273 264-386 (566)
65 COG5434 PGU1 Endopygalactoruna 90.0 1.4 3E-05 48.7 9.0 130 163-318 236-395 (542)
66 PF01095 Pectinesterase: Pecti 89.8 3.3 7.2E-05 42.3 11.0 123 155-300 14-156 (298)
67 PLN02671 pectinesterase 89.3 5.2 0.00011 42.1 12.2 119 155-291 73-219 (359)
68 PF08480 Disaggr_assoc: Disagg 88.7 5.1 0.00011 38.7 10.6 88 279-368 2-110 (198)
69 PF12708 Pectate_lyase_3: Pect 88.2 4.1 9E-05 37.6 9.7 48 213-275 94-141 (225)
70 COG3420 NosD Nitrous oxidase a 87.5 12 0.00025 39.6 13.1 133 180-333 45-197 (408)
71 COG3866 PelB Pectate lyase [Ca 81.8 12 0.00026 38.9 10.1 120 246-368 116-252 (345)
72 PRK10531 acyl-CoA thioesterase 81.7 34 0.00074 36.9 14.0 52 209-273 204-256 (422)
73 PF03211 Pectate_lyase: Pectat 70.3 28 0.00061 34.3 8.9 40 245-285 95-135 (215)
74 TIGR03804 para_beta_helix para 63.0 15 0.00033 26.2 4.2 41 248-290 1-41 (44)
75 PF01696 Adeno_E1B_55K: Adenov 58.2 2.7E+02 0.0058 30.0 14.0 97 205-319 139-238 (386)
76 PF12541 DUF3737: Protein of u 48.3 3.2E+02 0.007 28.1 12.1 31 309-343 194-224 (277)
77 PF07602 DUF1565: Protein of u 45.0 1.2E+02 0.0025 30.6 8.5 90 184-296 95-193 (246)
78 PF08480 Disaggr_assoc: Disagg 38.5 3.9E+02 0.0085 26.2 12.0 71 254-325 33-112 (198)
79 PF12541 DUF3737: Protein of u 37.6 1.5E+02 0.0032 30.4 7.9 94 207-330 15-118 (277)
80 PRK10123 wcaM putative colanic 32.3 88 0.0019 32.7 5.4 48 209-267 266-313 (464)
81 TIGR03804 para_beta_helix para 32.1 1.1E+02 0.0023 21.7 4.5 42 204-267 1-42 (44)
82 PLN02698 Probable pectinestera 22.3 1.9E+02 0.004 32.0 6.1 52 204-273 264-316 (497)
83 PF07822 Toxin_13: Neurotoxin 22.0 15 0.00032 28.1 -1.6 22 101-122 20-42 (55)
84 PF06355 Aegerolysin: Aegeroly 20.4 5.6E+02 0.012 23.3 7.9 71 210-286 14-88 (131)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.3e-56 Score=437.68 Aligned_cols=277 Identities=30% Similarity=0.351 Sum_probs=225.3
Q ss_pred CcccccC-------ccccCCCCeEEEEcCCCCCCCCCCCCcchhhhhcCCCCeEEEEeeceEEEeC------ceEEecCC
Q 013239 121 CAIGFGR-------NAIGGRDGRYYVVSDPGDDDAVNPKPGTLRHAVIQDRPLWIVFKRDMVITLK------QELIMNSF 187 (447)
Q Consensus 121 ~A~GFG~-------~ttGG~gG~vy~VT~~~D~~~~~~~pGtLR~Av~q~~P~~IVF~~~g~I~L~------~~L~I~Sn 187 (447)
..+||+. +||||.||.+++|++.+| |..+++..+|.++|+-+.|+|.+. .+|.+.||
T Consensus 33 ~~~GfA~~~~~~~~GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sN 102 (345)
T COG3866 33 SFAGFASNPAGSKTGTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSN 102 (345)
T ss_pred cccccccccCCCCCCcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccc
Confidence 3567765 689999999999999999 899999999996666667889886 56778999
Q ss_pred cEEEccCceEEEecCceEEEeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEe-ecCceEEEEeeEeec
Q 013239 188 KTIDGRGVNVHIANGACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISI-FGSSHIWIDHNSLSN 266 (447)
Q Consensus 188 kTI~G~gA~~~I~~G~gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI-~gs~nVWIDHcS~S~ 266 (447)
|||.|.|++++|. |++|.|+.+.|||||||+|++...++ | ..|+|+| .+++|||||||+|+.
T Consensus 103 kTivG~g~~a~~~-g~gl~i~~a~NVIirNltf~~~~~~d------------~----~~D~Isi~~~~~nIWIDH~tf~~ 165 (345)
T COG3866 103 KTIVGSGADATLV-GGGLKIRDAGNVIIRNLTFEGFYQGD------------P----NYDAISIYDDGHNIWIDHNTFSG 165 (345)
T ss_pred cEEEeeccccEEE-eceEEEEeCCcEEEEeeEEEeeccCC------------C----CCCcEEeccCCeEEEEEeeEecc
Confidence 9999999999998 88999999999999999999864221 1 2699999 679999999999999
Q ss_pred --------CCCCeEEeeeCCceEEEEcceeccCCeeeEecCCCCc-cCCccceEEEEeeEecCCCcCCCceeccCeEEEE
Q 013239 267 --------CADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSY-TRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVV 337 (447)
Q Consensus 267 --------~~DGliDi~~gS~~ITISnn~f~~H~k~mLiG~sD~~-~~d~~~~VTihhN~F~~~~~qR~Pr~R~G~~Hvv 337 (447)
..||++|+++++++||||||+|++|+|.+|+|.+|+. .+|++.+||+||||| +|+.||+||+|||.+||+
T Consensus 166 ~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvy 244 (345)
T COG3866 166 GSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVY 244 (345)
T ss_pred ccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEe
Confidence 7999999999999999999999999999999999985 457899999999999 799999999999999999
Q ss_pred cceeeCce--eeeeecCCCceEEEeccEEeCCCCccccceeeeccCCCCcccCCeeeccCceEEeceEEccCCCC-----
Q 013239 338 NNDYTHWV--MYAIGGSANPTINSQGNRYLAPENTFAKEVTKRVDTSTAVWRGWNWRSEGDMLLNGAYFTPSGAG----- 410 (447)
Q Consensus 338 NN~y~nw~--~Yaigg~~~~~I~segN~F~a~~~~~~k~vt~r~~~~~~~~~~w~w~s~Gd~~~nGa~f~~sg~~----- 410 (447)
||||.... .||++-+..++|++|+|||+....+...--|++. .++|. . -+|++|..++..
T Consensus 245 NNYy~~~~~~g~a~~iG~~AkiyvE~NyF~~~~~~~~f~dt~~~---~GY~~---~-------d~gsy~~~s~~~~~~~~ 311 (345)
T COG3866 245 NNYYEGNPKFGVAITIGTSAKIYVENNYFENGSEGLGFLDTKGT---SGYAN---Q-------DSGSYLNSSKSMSVRAG 311 (345)
T ss_pred ccccccCcccceEEeeccceEEEEecceeccCCCCceeeecCCc---cceEE---e-------ccCceecccCCcccccC
Confidence 99999655 4566555559999999999997554321112222 12211 1 335555555433
Q ss_pred -CCCCCCCCCccccCCCCccccc-cccccc
Q 013239 411 -SGASYARASSLGAKSSSSVGTL-TSNAGA 438 (447)
Q Consensus 411 -~~~~y~~~~~~~~~~~s~v~~l-t~~aG~ 438 (447)
....+...++|++.|...|++. |+.||+
T Consensus 312 G~~w~ps~~Y~Ytvd~~~dVks~Vt~yAGa 341 (345)
T COG3866 312 GVTWNPSSYYSYTVDPPEDVKSFVTNYAGA 341 (345)
T ss_pred CccCCCCCCcccccCChHHhhhhhhccccc
Confidence 2345677788999988877766 888884
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=2.6e-52 Score=394.81 Aligned_cols=189 Identities=41% Similarity=0.603 Sum_probs=159.8
Q ss_pred EEEeeceEEEeCceEEecCCcEEEccCceEEEecCceEEEe-ccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCC
Q 013239 168 IVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQ-FITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADG 246 (447)
Q Consensus 168 IVF~~~g~I~L~~~L~I~SnkTI~G~gA~~~I~~G~gi~i~-~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~ 246 (447)
+||+++|+|+++.+|.|.|||||+|+|++++|. |+|+.+. +++|||||||+|++.. ++..+...+.....++
T Consensus 3 ~ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~-~~G~~i~~~~~NVIirNl~~~~~~------~~~~~~~~~~~~~~~~ 75 (200)
T PF00544_consen 3 LIIKVSGTIDLKSPISVGSNKTIIGIGAGATII-GGGLRIIKGASNVIIRNLRFRNVP------VDPGPDWSGDGDSSDG 75 (200)
T ss_dssp EEEEEHHCCHHHCEEEEESSEEEEEETTTTEEE-SSEEEEEESCEEEEEES-EEECEE------EECSTEEETTEEECS-
T ss_pred EEEEEEeEEccCCeEEECCCcEEEEccCCeEEE-CceEEEecCCCeEEEECCEEEecc------ccCCcccCCCccccCC
Confidence 455668899999999999999999999999998 7788887 9999999999999840 1111111122234689
Q ss_pred CeEEeecCceEEEEeeEeecC--------CCCeEEeeeCCceEEEEcceeccCCeeeEecCCCCccCCccceEEEEeeEe
Q 013239 247 DAISIFGSSHIWIDHNSLSNC--------ADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHF 318 (447)
Q Consensus 247 DaIsI~gs~nVWIDHcS~S~~--------~DGliDi~~gS~~ITISnn~f~~H~k~mLiG~sD~~~~d~~~~VTihhN~F 318 (447)
|+|+|++++|||||||+|+|+ .||++|++.++++||||||+|++|+|+||+|++|+...|..++||||||||
T Consensus 76 Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f 155 (200)
T PF00544_consen 76 DAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYF 155 (200)
T ss_dssp -SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EE
T ss_pred CeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEE
Confidence 999999999999999999999 999999999999999999999999999999999888767679999999999
Q ss_pred cCCCcCCCceeccCeEEEEcceeeCceeeeeecCCCceEEEeccEE
Q 013239 319 GEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRY 364 (447)
Q Consensus 319 ~~~~~qR~Pr~R~G~~HvvNN~y~nw~~Yaigg~~~~~I~segN~F 364 (447)
.++.+||||+|+|++|+|||||+++..|+++++.++++++|+|||
T Consensus 156 -~~~~~R~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 156 -ANTNSRNPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp -EEEEE-TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred -CchhhCCCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 589999999999999999999999999999999999999999999
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=2.2e-48 Score=365.54 Aligned_cols=171 Identities=61% Similarity=0.927 Sum_probs=158.9
Q ss_pred ceEEecCCcEEEccCceEEEecCceEEEeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEeecCceEEE
Q 013239 180 QELIMNSFKTIDGRGVNVHIANGACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWI 259 (447)
Q Consensus 180 ~~L~I~SnkTI~G~gA~~~I~~G~gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWI 259 (447)
.+|.|.|||||+|+|+++.|. |++|+++.++|||||||+|+++.+. ++ .++|+|++++++||||
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~-g~gl~i~~~~NVIirnl~i~~~~~~-----------~~----~~~D~i~~~~~~~VwI 73 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIK-GGGLTIKSVSNVIIRNLTIHDPKPV-----------YG----SDGDAISIDGSSNVWI 73 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEE-eeEEEEEecceEEEeCCEEECCccC-----------CC----CCCCEEEEeCCCeEEE
Confidence 568899999999999999997 8899999999999999999986442 11 4789999999999999
Q ss_pred EeeEeecC---------CCCeEEeeeCCceEEEEcceeccCCeeeEecCCCCccCCccceEEEEeeEecCCCcCCCceec
Q 013239 260 DHNSLSNC---------ADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCR 330 (447)
Q Consensus 260 DHcS~S~~---------~DGliDi~~gS~~ITISnn~f~~H~k~mLiG~sD~~~~d~~~~VTihhN~F~~~~~qR~Pr~R 330 (447)
|||+|+|+ .|+++|++.++++||||||+|.+|+|++|+|++|++..+..++||+|||||. ++.+|+||+|
T Consensus 74 DHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~-~~~~R~P~~r 152 (190)
T smart00656 74 DHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVR 152 (190)
T ss_pred EccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEc-CcccCCCccc
Confidence 99999998 8999999999999999999999999999999999887667899999999995 7999999999
Q ss_pred cCeEEEEcceeeCceeeeeecCCCceEEEeccEEeCC
Q 013239 331 HGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAP 367 (447)
Q Consensus 331 ~G~~HvvNN~y~nw~~Yaigg~~~~~I~segN~F~a~ 367 (447)
+|++|+|||||++|..|+++.+.++++++|+|||+..
T Consensus 153 ~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 153 FGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred CCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 9999999999999999999999999999999999875
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.85 E-value=5.2e-07 Score=91.53 Aligned_cols=238 Identities=16% Similarity=0.183 Sum_probs=126.1
Q ss_pred hhhhhcCCCCe-EEEEeeceEEEeCceEEec-CCcEEEccCce-EEEe------cCceEEEeccccEEEEceEEEeccCC
Q 013239 156 LRHAVIQDRPL-WIVFKRDMVITLKQELIMN-SFKTIDGRGVN-VHIA------NGACITIQFITNVIIHGINIHDCKPT 226 (447)
Q Consensus 156 LR~Av~q~~P~-~IVF~~~g~I~L~~~L~I~-SnkTI~G~gA~-~~I~------~G~gi~i~~a~NVIIRnL~i~~~~pg 226 (447)
|.+|+.+-.|- +|++ ..|+-++++.|.|. +++||.|.|.. +.|. .+-+|.+ .++||.|++|+|++...
T Consensus 1 iQ~Ai~~A~~GDtI~l-~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v-~a~~VtI~~ltI~~~~~- 77 (314)
T TIGR03805 1 LQEALIAAQPGDTIVL-PEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLV-TSDDVTLSDLAVENTKG- 77 (314)
T ss_pred CHhHHhhCCCCCEEEE-CCCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEE-EeCCeEEEeeEEEcCCC-
Confidence 34566555544 3444 34677777777775 78888887753 2231 0233443 46777777777765321
Q ss_pred CCcccccCCC------CcCCc----ccCCCCeEEeecCceEEEEeeEeecCCCCeEEeeeCCceEEEEcceeccCCeeeE
Q 013239 227 GNAMVRSSPS------HYGWR----TMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTHHNEVML 296 (447)
Q Consensus 227 ~~~~i~~s~~------~~g~r----~~~d~DaIsI~gs~nVWIDHcS~S~~~DGliDi~~gS~~ITISnn~f~~H~k~mL 296 (447)
++=.++.+.. ...|. .....+||.+..++++-|.+|.++...|--|-+ ..|.+++|++|.+.+-..+..
T Consensus 78 ~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv-~~s~~~~v~nN~~~~n~~GI~ 156 (314)
T TIGR03805 78 DGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYV-GQSQNIVVRNNVAEENVAGIE 156 (314)
T ss_pred CeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEE-CCCCCeEEECCEEccCcceEE
Confidence 0001111100 00111 013467888888888888888888877744445 467888888888876555554
Q ss_pred ecCCCCccCCccceEEEEeeEecCCCcCCC-----ce---eccCeEEEEcceeeCcee----------------eeeecC
Q 013239 297 LGHSDSYTRDKVMQVTIAYNHFGEGLIQRM-----PR---CRHGYFHVVNNDYTHWVM----------------YAIGGS 352 (447)
Q Consensus 297 iG~sD~~~~d~~~~VTihhN~F~~~~~qR~-----Pr---~R~G~~HvvNN~y~nw~~----------------Yaigg~ 352 (447)
+-.+. ++.+.+|.+- ++..-. |. .-...+.|.||.+.+-.. .+|-..
T Consensus 157 i~~S~--------~~~v~~N~~~-~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~ 227 (314)
T TIGR03805 157 IENSQ--------NADVYNNIAT-NNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVM 227 (314)
T ss_pred EEecC--------CcEEECCEEe-ccceeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEE
Confidence 44332 4566777763 222111 11 111356777777653210 111112
Q ss_pred CCceEEEeccEEeCCCCccccceeeecc-----CCCCcccCCeeeccCceEEeceEEccCCCC
Q 013239 353 ANPTINSQGNRYLAPENTFAKEVTKRVD-----TSTAVWRGWNWRSEGDMLLNGAYFTPSGAG 410 (447)
Q Consensus 353 ~~~~I~segN~F~a~~~~~~k~vt~r~~-----~~~~~~~~w~w~s~Gd~~~nGa~f~~sg~~ 410 (447)
....+.+++|.|..-.....--+..... +.+..|..+ ..++.+-++.|...|..
T Consensus 228 ~~~~v~I~~N~i~~n~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~v~i~~N~~~~~g~~ 286 (314)
T TIGR03805 228 ANRDVEIFGNVISNNDTANVLISSYHSTGLPDQPPDDGFDPY----PRNISIHDNTFSDGGTN 286 (314)
T ss_pred cccceEEECCEEeCCcceeEEEEecccccCCCCCcCCCccCC----CcceEEEccEeecCCCC
Confidence 2246788899988765442211111110 111223222 26777888888887753
No 5
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.10 E-value=5.1e-05 Score=80.08 Aligned_cols=183 Identities=17% Similarity=0.222 Sum_probs=76.7
Q ss_pred hhhhhcCCCCeEEEEeeceEEEeCceEEe------cCCcEEEccCc-eEEEecCceEEEeccccEEEEceEEEeccCCCC
Q 013239 156 LRHAVIQDRPLWIVFKRDMVITLKQELIM------NSFKTIDGRGV-NVHIANGACITIQFITNVIIHGINIHDCKPTGN 228 (447)
Q Consensus 156 LR~Av~q~~P~~IVF~~~g~I~L~~~L~I------~SnkTI~G~gA-~~~I~~G~gi~i~~a~NVIIRnL~i~~~~pg~~ 228 (447)
|..||.+-.|=--|+=.+|+-+ ..+|.+ ...+||..+.+ .+.|.+..+|+|. ++.++|.+|.|+++.+...
T Consensus 7 lq~Ai~~a~pGD~I~L~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~GL~F~ng~~~~~ 84 (425)
T PF14592_consen 7 LQSAIDNAKPGDTIVLADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSGLKFKNGYTPTG 84 (425)
T ss_dssp HHHHHHH--TT-EEEE-SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEEEE---TT
T ss_pred HHHHHHhCCCCCEEEECCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeCeEEecCCCCCC
Confidence 8888876433222222244544 224443 34578887743 4666645567775 6999999999998653222
Q ss_pred ccccc--CC-----CCc--------CCcc-cCCCCeEEe----ecCceEEEEeeEeecC-CCC-eEEee-------eCCc
Q 013239 229 AMVRS--SP-----SHY--------GWRT-MADGDAISI----FGSSHIWIDHNSLSNC-ADG-LIDAI-------MGST 279 (447)
Q Consensus 229 ~~i~~--s~-----~~~--------g~r~-~~d~DaIsI----~gs~nVWIDHcS~S~~-~DG-liDi~-------~gS~ 279 (447)
..|.- .. .|- .+.. ..+.+-..+ -.++|-=||||+|..- ..| .|-+. .-..
T Consensus 85 ~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~~~~ 164 (425)
T PF14592_consen 85 AVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQSIAN 164 (425)
T ss_dssp T--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE--S--SS-----
T ss_pred ceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEEecccCcccccc
Confidence 22111 00 010 0100 011122333 2356667899999972 222 22322 1245
Q ss_pred eEEEEcceecc-------CCeeeEecCCCCccCCccceEEEEeeEecCCCcCCCcee--ccCeEEEEcceeeC
Q 013239 280 AITVSNNYFTH-------HNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRC--RHGYFHVVNNDYTH 343 (447)
Q Consensus 280 ~ITISnn~f~~-------H~k~mLiG~sD~~~~d~~~~VTihhN~F~~~~~qR~Pr~--R~G~~HvvNN~y~n 343 (447)
+-+|.+|+|.+ ...++-||.|.....+ -+.++.+||| ++|.+-.=-+ +-+.--+.||.|++
T Consensus 165 ~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlF-e~cdGE~EIISvKS~~N~ir~Ntf~e 234 (425)
T PF14592_consen 165 YHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLF-ERCDGEVEIISVKSSDNTIRNNTFRE 234 (425)
T ss_dssp --EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EE-EEE-SSSEEEEEESBT-EEES-EEES
T ss_pred CceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchh-hhcCCceeEEEeecCCceEeccEEEe
Confidence 77999999983 5567888877543222 3789999999 5676553332 22444455555544
No 6
>PLN02218 polygalacturonase ADPG
Probab=98.07 E-value=0.00017 Score=76.64 Aligned_cols=138 Identities=18% Similarity=0.218 Sum_probs=96.4
Q ss_pred CceEEEeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEeecCceEEEEeeEeecCCCCeEEeeeCCceE
Q 013239 202 GACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAI 281 (447)
Q Consensus 202 G~gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~~~DGliDi~~gS~~I 281 (447)
-..+.+..++||+|+||+|.. |.+ ....|||.+.+++||.|.+|.++.+ |..|.++.++++|
T Consensus 215 ~w~i~~~~~~nV~i~~v~I~a--~~~---------------spNTDGIdi~ss~nV~I~n~~I~tG-DDcIaIksgs~nI 276 (431)
T PLN02218 215 QIQISIEKCSNVQVSNVVVTA--PAD---------------SPNTDGIHITNTQNIRVSNSIIGTG-DDCISIESGSQNV 276 (431)
T ss_pred CEEEEEEceeeEEEEEEEEeC--CCC---------------CCCCCcEeecccceEEEEccEEecC-CceEEecCCCceE
Confidence 345667789999999999974 211 1357999999999999999999987 6678999999999
Q ss_pred EEEcceeccCCeeeEecCCCCcc-CCccceEEEEeeEecCCCcCCCceec---cCeEEEEcceeeCceeeeeecCCCceE
Q 013239 282 TVSNNYFTHHNEVMLLGHSDSYT-RDKVMQVTIAYNHFGEGLIQRMPRCR---HGYFHVVNNDYTHWVMYAIGGSANPTI 357 (447)
Q Consensus 282 TISnn~f~~H~k~mLiG~sD~~~-~d~~~~VTihhN~F~~~~~qR~Pr~R---~G~~HvvNN~y~nw~~Yaigg~~~~~I 357 (447)
+|++|.+. +..++-||+--.+. .+..-+|++.++.| .+ ..+.=|++ .|.-.+-|=.|.|..|-.+. .| |
T Consensus 277 ~I~n~~c~-~GHGisIGS~g~~~~~~~V~nV~v~n~~~-~~-t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~---~p-I 349 (431)
T PLN02218 277 QINDITCG-PGHGISIGSLGDDNSKAFVSGVTVDGAKL-SG-TDNGVRIKTYQGGSGTASNIIFQNIQMENVK---NP-I 349 (431)
T ss_pred EEEeEEEE-CCCCEEECcCCCCCCCceEEEEEEEccEE-ec-CCcceEEeecCCCCeEEEEEEEEeEEEEccc---cc-E
Confidence 99999995 33456788643322 34566899999998 33 45666665 23344455555665554432 23 5
Q ss_pred EEeccEE
Q 013239 358 NSQGNRY 364 (447)
Q Consensus 358 ~segN~F 364 (447)
.+..+|.
T Consensus 350 ~Idq~Y~ 356 (431)
T PLN02218 350 IIDQDYC 356 (431)
T ss_pred EEEeecc
Confidence 5555554
No 7
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.01 E-value=7.8e-05 Score=64.85 Aligned_cols=133 Identities=24% Similarity=0.240 Sum_probs=83.5
Q ss_pred eEEEeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEeecCceEEEEeeEeecCCCCeEEeeeCCceEEE
Q 013239 204 CITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITV 283 (447)
Q Consensus 204 gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~~~DGliDi~~gS~~ITI 283 (447)
||.+....++.|++.+|+++ ..+||.+.++..+.|+.|+|.+...| +.+ .+..+++|
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~---------------------~~~gi~~~~~~~~~i~n~~i~~~~~g-i~~-~~~~~~~i 58 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNN---------------------GGDGIHVSGSSNITIENCTISNGGYG-IYV-SGGSNVTI 58 (158)
T ss_dssp CEEETTCEC-EEESEEEESS---------------------SSECEEE-SSCESEEES-EEESSTTS-EEE-ECCES-EE
T ss_pred EEEEECCcCeEEeeeEEEeC---------------------CCeEEEEEcCCCeEEECeEEECCCcE-EEE-ecCCCeEE
Confidence 47788889999999999963 46899999999999999999994444 466 45689999
Q ss_pred EcceeccCCeeeEecCCCCccCCccceEEEEeeEecCCCcCCCceec--cCeEEEEcceeeCceeeeeecCC--CceEEE
Q 013239 284 SNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCR--HGYFHVVNNDYTHWVMYAIGGSA--NPTINS 359 (447)
Q Consensus 284 Snn~f~~H~k~mLiG~sD~~~~d~~~~VTihhN~F~~~~~qR~Pr~R--~G~~HvvNN~y~nw~~Yaigg~~--~~~I~s 359 (447)
++|.|.+......+-.+ -.+++.+|.|. ++..-.=.+. ...+.+.||.+.+-..+++-... .+.+.+
T Consensus 59 ~~~~~~~~~~~i~~~~~--------~~~~i~~~~i~-~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i 129 (158)
T PF13229_consen 59 SNNTISDNGSGIYVSGS--------SNITIENNRIE-NNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTI 129 (158)
T ss_dssp ES-EEES-SEEEECCS---------CS-EEES-EEE-CSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EE
T ss_pred ECeEEEEccceEEEEec--------CCceecCcEEE-cCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEE
Confidence 99999987744333322 26788888884 4433233333 23578888888875544433222 458888
Q ss_pred eccEEeCCC
Q 013239 360 QGNRYLAPE 368 (447)
Q Consensus 360 egN~F~a~~ 368 (447)
++|.|....
T Consensus 130 ~~n~i~~~~ 138 (158)
T PF13229_consen 130 ENNTISNNG 138 (158)
T ss_dssp ECEEEECES
T ss_pred EEEEEEeCc
Confidence 999998654
No 8
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.91 E-value=0.00053 Score=72.29 Aligned_cols=125 Identities=19% Similarity=0.214 Sum_probs=89.0
Q ss_pred CceEEEeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEeecCceEEEEeeEeecCCCCeEEeeeCCceE
Q 013239 202 GACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAI 281 (447)
Q Consensus 202 G~gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~~~DGliDi~~gS~~I 281 (447)
-..|.+..++||.|++|+|... .+ ....|||-+..++||+|.+|.+..+.| .|.++.++++|
T Consensus 178 ~w~i~~~~~~~v~i~~v~I~~~--~~---------------spNtDGidi~~s~nV~I~n~~I~~GDD-cIaiksg~~nI 239 (404)
T PLN02188 178 FFHIALVECRNFKGSGLKISAP--SD---------------SPNTDGIHIERSSGVYISDSRIGTGDD-CISIGQGNSQV 239 (404)
T ss_pred CeEEEEEccccEEEEEEEEeCC--CC---------------CCCCCcEeeeCcccEEEEeeEEeCCCc-EEEEccCCccE
Confidence 4567777999999999999852 11 135799999999999999999998877 77998899999
Q ss_pred EEEcceeccCCeeeEecCCCCc-cCCccceEEEEeeEecCCCcCCCceecc-----CeEEEEcceeeCceee
Q 013239 282 TVSNNYFTHHNEVMLLGHSDSY-TRDKVMQVTIAYNHFGEGLIQRMPRCRH-----GYFHVVNNDYTHWVMY 347 (447)
Q Consensus 282 TISnn~f~~H~k~mLiG~sD~~-~~d~~~~VTihhN~F~~~~~qR~Pr~R~-----G~~HvvNN~y~nw~~Y 347 (447)
+|+|+.+.. ..++-+|+--.+ ......+|++.++.|. + ..+.=|++- |...+-|=.|.|..|-
T Consensus 240 ~I~n~~c~~-ghGisiGSlG~~~~~~~V~nV~v~n~~~~-~-t~~GiriKt~~g~~~~G~v~nI~f~ni~m~ 308 (404)
T PLN02188 240 TITRIRCGP-GHGISVGSLGRYPNEGDVTGLVVRDCTFT-G-TTNGIRIKTWANSPGKSAATNMTFENIVMN 308 (404)
T ss_pred EEEEEEEcC-CCcEEeCCCCCCCcCCcEEEEEEEeeEEE-C-CCcEEEEEEecCCCCceEEEEEEEEeEEec
Confidence 999998853 345677863222 2234679999999993 3 355555531 2233444445555443
No 9
>PLN02155 polygalacturonase
Probab=97.89 E-value=0.00053 Score=72.14 Aligned_cols=138 Identities=19% Similarity=0.199 Sum_probs=95.7
Q ss_pred CceEEEeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEeecCceEEEEeeEeecCCCCeEEeeeCCceE
Q 013239 202 GACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAI 281 (447)
Q Consensus 202 G~gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~~~DGliDi~~gS~~I 281 (447)
-..+.+..++||.|+||+|.. |+. ....|||.+..++||+|.+|.+..+.| .|.++.++++|
T Consensus 168 ~w~i~~~~~~nv~i~~v~I~~--p~~---------------~~NtDGidi~~s~nV~I~~~~I~~gDD-cIaik~gs~nI 229 (394)
T PLN02155 168 VSHMTLNGCTNVVVRNVKLVA--PGN---------------SPNTDGFHVQFSTGVTFTGSTVQTGDD-CVAIGPGTRNF 229 (394)
T ss_pred CeEEEEECeeeEEEEEEEEEC--CCC---------------CCCCCccccccceeEEEEeeEEecCCc-eEEcCCCCceE
Confidence 345677789999999999985 211 135799999999999999999998877 66998899999
Q ss_pred EEEcceeccCCeeeEecCCCCc-cCCccceEEEEeeEecCCCcCCCceecc----CeEEEEcceeeCceeeeeecCCCce
Q 013239 282 TVSNNYFTHHNEVMLLGHSDSY-TRDKVMQVTIAYNHFGEGLIQRMPRCRH----GYFHVVNNDYTHWVMYAIGGSANPT 356 (447)
Q Consensus 282 TISnn~f~~H~k~mLiG~sD~~-~~d~~~~VTihhN~F~~~~~qR~Pr~R~----G~~HvvNN~y~nw~~Yaigg~~~~~ 356 (447)
+|++|.+.. ..++-||+--.+ +.....+|++.++.| .+ ..+.=|++- +.-.|-|=.|.|..|-.+. .|
T Consensus 230 ~I~n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~-~~-t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~---~p- 302 (394)
T PLN02155 230 LITKLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVF-TG-SQNGVRIKSWARPSTGFVRNVFFQDLVMKNVE---NP- 302 (394)
T ss_pred EEEEEEEEC-CceEEeccccccCCCCcEEEEEEEeeEE-eC-CCcEEEEEEecCCCCEEEEEEEEEeEEEcCcc---cc-
Confidence 999998874 335778874322 234567999999999 33 345556631 2234445555665543332 12
Q ss_pred EEEeccEE
Q 013239 357 INSQGNRY 364 (447)
Q Consensus 357 I~segN~F 364 (447)
|.+..+|+
T Consensus 303 I~i~q~Y~ 310 (394)
T PLN02155 303 IIIDQNYC 310 (394)
T ss_pred EEEEeccc
Confidence 55555554
No 10
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.83 E-value=0.00062 Score=72.81 Aligned_cols=121 Identities=18% Similarity=0.178 Sum_probs=82.9
Q ss_pred EEEeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEeecCceEEEEeeEeecCCCCeEEeeeCCceEEEE
Q 013239 205 ITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITVS 284 (447)
Q Consensus 205 i~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~~~DGliDi~~gS~~ITIS 284 (447)
+.+..++||.|++|+|.... .....|||.+..++||+|.+|.++.+ |..|.++.++++|+|+
T Consensus 164 i~i~~c~nV~i~~l~I~ap~-----------------~spNTDGIDi~~S~nV~I~n~~I~tG-DDCIaiksgs~NI~I~ 225 (456)
T PLN03003 164 IHISECNYVTISSLRINAPE-----------------SSPNTDGIDVGASSNVVIQDCIIATG-DDCIAINSGTSNIHIS 225 (456)
T ss_pred EEEeccccEEEEEEEEeCCC-----------------CCCCCCcEeecCcceEEEEecEEecC-CCeEEeCCCCccEEEE
Confidence 44446677777777766421 12367999999999999999999876 5566999999999999
Q ss_pred cceeccCCeeeEecCCCCcc-CCccceEEEEeeEecCCCcCCCceec---cCeEEEEcceeeCcee
Q 013239 285 NNYFTHHNEVMLLGHSDSYT-RDKVMQVTIAYNHFGEGLIQRMPRCR---HGYFHVVNNDYTHWVM 346 (447)
Q Consensus 285 nn~f~~H~k~mLiG~sD~~~-~d~~~~VTihhN~F~~~~~qR~Pr~R---~G~~HvvNN~y~nw~~ 346 (447)
+|.+.. ..++-||+--++. .+...+|++.++.| .+ ..+.=|++ .|.-.+-|=.|.|..|
T Consensus 226 n~~c~~-GHGISIGSlg~~g~~~~V~NV~v~n~~~-~~-T~nGvRIKT~~Gg~G~v~nItf~nI~m 288 (456)
T PLN03003 226 GIDCGP-GHGISIGSLGKDGETATVENVCVQNCNF-RG-TMNGARIKTWQGGSGYARMITFNGITL 288 (456)
T ss_pred eeEEEC-CCCeEEeeccCCCCcceEEEEEEEeeEE-EC-CCcEEEEEEeCCCCeEEEEEEEEeEEe
Confidence 999864 3456788653332 34567999999999 44 45555765 2333344444555443
No 11
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.79 E-value=0.00046 Score=70.36 Aligned_cols=153 Identities=24% Similarity=0.196 Sum_probs=99.8
Q ss_pred CCCCeEEEEeeceEEEeCceEEecCCcEEEccCceEEEecCceEEEeccccEEEEceEEEeccCCCCcccccCCCCcCCc
Q 013239 162 QDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWR 241 (447)
Q Consensus 162 q~~P~~IVF~~~g~I~L~~~L~I~SnkTI~G~gA~~~I~~G~gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r 241 (447)
...|+.|.|...-.+.++ ++||.- +| ...+.+..++||.|++|+|+....
T Consensus 89 ~~rp~~i~~~~~~~~~i~-------~i~~~n--sp-----~w~~~~~~~~nv~i~~i~I~~~~~---------------- 138 (326)
T PF00295_consen 89 QRRPRLIRFNNCKNVTIE-------GITIRN--SP-----FWHIHINDCDNVTISNITINNPAN---------------- 138 (326)
T ss_dssp SSSSESEEEEEEEEEEEE-------SEEEES---S-----SESEEEESEEEEEEESEEEEEGGG----------------
T ss_pred ccccceeeeeeecceEEE-------eeEecC--CC-----eeEEEEEccCCeEEcceEEEecCC----------------
Confidence 356888888764223222 233332 22 567888899999999999996421
Q ss_pred ccCCCCeEEeecCceEEEEeeEeecCCCCeEEeeeCCceEEEEcceeccCCeeeEecCCCCcc-CCccceEEEEeeEecC
Q 013239 242 TMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYT-RDKVMQVTIAYNHFGE 320 (447)
Q Consensus 242 ~~~d~DaIsI~gs~nVWIDHcS~S~~~DGliDi~~gS~~ITISnn~f~~H~k~mLiG~sD~~~-~d~~~~VTihhN~F~~ 320 (447)
....|||-+.+++||.|++|.+..+ |..|.++.++.+|+|+||.|.. ..++-+|+--... ....-+|+|.++.|-
T Consensus 139 -~~NtDGid~~~s~nv~I~n~~i~~g-DD~Iaiks~~~ni~v~n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i~- 214 (326)
T PF00295_consen 139 -SPNTDGIDIDSSKNVTIENCFIDNG-DDCIAIKSGSGNILVENCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTII- 214 (326)
T ss_dssp -CTS--SEEEESEEEEEEESEEEESS-SESEEESSEECEEEEESEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEEE-
T ss_pred -CCCcceEEEEeeeEEEEEEeecccc-cCcccccccccceEEEeEEEec-cccceeeeccCCccccEEEeEEEEEEEee-
Confidence 1357999999999999999999877 6677998888899999999974 3446677532221 123468999999983
Q ss_pred CCcCCCceecc---CeEEEEcceeeCceeeee
Q 013239 321 GLIQRMPRCRH---GYFHVVNNDYTHWVMYAI 349 (447)
Q Consensus 321 ~~~qR~Pr~R~---G~~HvvNN~y~nw~~Yai 349 (447)
+ ..|.-|++- +.-.|-|=.|++..+..+
T Consensus 215 ~-t~~gi~iKt~~~~~G~v~nI~f~ni~~~~v 245 (326)
T PF00295_consen 215 N-TDNGIRIKTWPGGGGYVSNITFENITMENV 245 (326)
T ss_dssp S-ESEEEEEEEETTTSEEEEEEEEEEEEEEEE
T ss_pred c-cceEEEEEEecccceEEeceEEEEEEecCC
Confidence 3 456666642 333444444555544433
No 12
>PLN02793 Probable polygalacturonase
Probab=97.76 E-value=0.001 Score=70.93 Aligned_cols=108 Identities=18% Similarity=0.175 Sum_probs=80.6
Q ss_pred CceEEEeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEeecCceEEEEeeEeecCCCCeEEeeeCCceE
Q 013239 202 GACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAI 281 (447)
Q Consensus 202 G~gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~~~DGliDi~~gS~~I 281 (447)
...|.+..++||.|+||+|.... .....|||.+..++||+|.+|.+..+ |..|.++.++++|
T Consensus 200 ~~~i~~~~~~nv~i~~l~I~~p~-----------------~spNTDGIdi~~s~nV~I~n~~I~~g-DDcIaik~~s~nI 261 (443)
T PLN02793 200 QMHIAFTNCRRVTISGLKVIAPA-----------------TSPNTDGIHISASRGVVIKDSIVRTG-DDCISIVGNSSRI 261 (443)
T ss_pred CeEEEEEccCcEEEEEEEEECCC-----------------CCCCCCcEeeeccceEEEEeCEEeCC-CCeEEecCCcCCE
Confidence 34567778999999999998521 01357999999999999999998865 6677998899999
Q ss_pred EEEcceeccCCeeeEecCCCCc-cCCccceEEEEeeEecCCCcCCCceec
Q 013239 282 TVSNNYFTHHNEVMLLGHSDSY-TRDKVMQVTIAYNHFGEGLIQRMPRCR 330 (447)
Q Consensus 282 TISnn~f~~H~k~mLiG~sD~~-~~d~~~~VTihhN~F~~~~~qR~Pr~R 330 (447)
+|+||.+.. ..+.-||+--.+ ......+|++.++.| . ...+.=|++
T Consensus 262 ~I~n~~c~~-GhGisIGSlg~~~~~~~V~nV~v~n~~~-~-~t~~GirIK 308 (443)
T PLN02793 262 KIRNIACGP-GHGISIGSLGKSNSWSEVRDITVDGAFL-S-NTDNGVRIK 308 (443)
T ss_pred EEEEeEEeC-CccEEEecccCcCCCCcEEEEEEEccEE-e-CCCceEEEE
Confidence 999999854 235667863222 223467899999998 3 345666664
No 13
>PLN02218 polygalacturonase ADPG
Probab=97.64 E-value=0.003 Score=67.21 Aligned_cols=119 Identities=18% Similarity=0.311 Sum_probs=85.4
Q ss_pred CeEEEEeeceEEEeCceEEecC--CcEEEccCceEE-----Eec------C-ceEEEeccccEEEEceEEEeccCCCCcc
Q 013239 165 PLWIVFKRDMVITLKQELIMNS--FKTIDGRGVNVH-----IAN------G-ACITIQFITNVIIHGINIHDCKPTGNAM 230 (447)
Q Consensus 165 P~~IVF~~~g~I~L~~~L~I~S--nkTI~G~gA~~~-----I~~------G-~gi~i~~a~NVIIRnL~i~~~~pg~~~~ 230 (447)
..||.|... +.|.|.. .=||+|+|+.-. ... . ..|++.+++||.|++|+|++.
T Consensus 147 ~~wi~~~~~------~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nS------- 213 (431)
T PLN02218 147 SKWIMFDGV------NNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNA------- 213 (431)
T ss_pred ccCEEEecC------cEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcC-------
Confidence 457777532 2355533 268899884210 000 0 146788999999999999963
Q ss_pred cccCCCCcCCcccCCCCeEEeecCceEEEEeeEeec-----CCCCeEEeeeCCceEEEEcceeccCCeeeEecCCCCccC
Q 013239 231 VRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSN-----CADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTR 305 (447)
Q Consensus 231 i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~-----~~DGliDi~~gS~~ITISnn~f~~H~k~mLiG~sD~~~~ 305 (447)
..=.|.+.+++||.|++.++.. -.||. |+ ..+++|+|++|.|..-+...-|...
T Consensus 214 --------------p~w~i~~~~~~nV~i~~v~I~a~~~spNTDGI-di-~ss~nV~I~n~~I~tGDDcIaIksg----- 272 (431)
T PLN02218 214 --------------QQIQISIEKCSNVQVSNVVVTAPADSPNTDGI-HI-TNTQNIRVSNSIIGTGDDCISIESG----- 272 (431)
T ss_pred --------------CCEEEEEEceeeEEEEEEEEeCCCCCCCCCcE-ee-cccceEEEEccEEecCCceEEecCC-----
Confidence 2236788999999999999875 56776 88 6789999999999988888777653
Q ss_pred CccceEEEEeeEec
Q 013239 306 DKVMQVTIAYNHFG 319 (447)
Q Consensus 306 d~~~~VTihhN~F~ 319 (447)
..+|++.++.++
T Consensus 273 --s~nI~I~n~~c~ 284 (431)
T PLN02218 273 --SQNVQINDITCG 284 (431)
T ss_pred --CceEEEEeEEEE
Confidence 237888888774
No 14
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=97.63 E-value=3.1e-05 Score=60.34 Aligned_cols=31 Identities=6% Similarity=0.173 Sum_probs=27.9
Q ss_pred cCCchhHhhhccCCChHHHHHHHHHHhhhcc
Q 013239 55 EFDDEEWTHEHAVDNPDEIAATVDMAIRNST 85 (447)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (447)
..+|+++++++|+|||++|+++||+.|+.++
T Consensus 13 a~eA~~~a~~aY~pdP~~Vt~~FN~~V~~~~ 43 (56)
T PF04431_consen 13 AEEARKAALAAYVPDPENVTNEFNRHVHRAM 43 (56)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3469999999999999999999999998766
No 15
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.63 E-value=0.0021 Score=65.45 Aligned_cols=160 Identities=14% Similarity=0.047 Sum_probs=94.7
Q ss_pred cCCcEEEccCceEEEecCceEEEeccccEEEEceEEEeccC-----CCCc-ccccCCCCc--CCc-ccCCCCeEEeecCc
Q 013239 185 NSFKTIDGRGVNVHIANGACITIQFITNVIIHGINIHDCKP-----TGNA-MVRSSPSHY--GWR-TMADGDAISIFGSS 255 (447)
Q Consensus 185 ~SnkTI~G~gA~~~I~~G~gi~i~~a~NVIIRnL~i~~~~p-----g~~~-~i~~s~~~~--g~r-~~~d~DaIsI~gs~ 255 (447)
.+++||.|.+-.- ..+.+|.+++++|++|+++++..... +.-| ++..+..-. +-. .....+||.+..++
T Consensus 62 a~~VtI~~ltI~~--~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~s~ 139 (314)
T TIGR03805 62 SDDVTLSDLAVEN--TKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQSQ 139 (314)
T ss_pred eCCeEEEeeEEEc--CCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECCCC
Confidence 5666666653210 12456777788888888888862210 0001 011110000 000 01234589999999
Q ss_pred eEEEEeeEeecCCCCeEEeeeCCceEEEEcceeccCCeeeEecCCCCccCCccceEEEEeeEecCCCcCCC---------
Q 013239 256 HIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRM--------- 326 (447)
Q Consensus 256 nVWIDHcS~S~~~DGliDi~~gS~~ITISnn~f~~H~k~mLiG~sD~~~~d~~~~VTihhN~F~~~~~qR~--------- 326 (447)
++.|-+|.+.....|. -+ ..|.+++|.+|.+.+-.-+.++-..++.......++.+++|.|. ++...+
T Consensus 140 ~~~v~nN~~~~n~~GI-~i-~~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~-~n~~~n~~~~gn~v~ 216 (314)
T TIGR03805 140 NIVVRNNVAEENVAGI-EI-ENSQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIF-DNNTPNFAPAGSIVA 216 (314)
T ss_pred CeEEECCEEccCcceE-EE-EecCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEE-CCCCCCCcccCCcee
Confidence 9999999999888875 44 45889999999999866666663322211112348999999995 343321
Q ss_pred --ceecc------CeEEEEcceeeCceeeee
Q 013239 327 --PRCRH------GYFHVVNNDYTHWVMYAI 349 (447)
Q Consensus 327 --Pr~R~------G~~HvvNN~y~nw~~Yai 349 (447)
|.-+. -.+.++||.+.+-...++
T Consensus 217 ~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i 247 (314)
T TIGR03805 217 SVPAGTGVVVMANRDVEIFGNVISNNDTANV 247 (314)
T ss_pred cCCCCcEEEEEcccceEEECCEEeCCcceeE
Confidence 11110 146899999987554443
No 16
>PLN03010 polygalacturonase
Probab=97.62 E-value=0.0044 Score=65.63 Aligned_cols=136 Identities=22% Similarity=0.197 Sum_probs=86.1
Q ss_pred EEEeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEeecCceEEEEeeEeecCCCCeEEeeeCCceEEEE
Q 013239 205 ITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITVS 284 (447)
Q Consensus 205 i~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~~~DGliDi~~gS~~ITIS 284 (447)
|.+..++||.|++|+|.... .....|||-+..++||+|.+|.+..+ |..|.++.++++++|.
T Consensus 183 i~i~~~~nv~i~~i~I~a~~-----------------~s~NTDGiDi~~s~nV~I~n~~I~~g-DDcIaiksgs~ni~I~ 244 (409)
T PLN03010 183 ISIKTCNYVAISKINILAPE-----------------TSPNTDGIDISYSTNINIFDSTIQTG-DDCIAINSGSSNINIT 244 (409)
T ss_pred EEEeccccEEEEEEEEeCCC-----------------CCCCCCceeeeccceEEEEeeEEecC-CCeEEecCCCCcEEEE
Confidence 33445666666666665311 11357999999999999999988887 6677998888888888
Q ss_pred cceeccCCeeeEecCCCCc-cCCccceEEEEeeEecCCCcCCCceec---cCeEEEEcceeeCceeeeeecCCCceEEEe
Q 013239 285 NNYFTHHNEVMLLGHSDSY-TRDKVMQVTIAYNHFGEGLIQRMPRCR---HGYFHVVNNDYTHWVMYAIGGSANPTINSQ 360 (447)
Q Consensus 285 nn~f~~H~k~mLiG~sD~~-~~d~~~~VTihhN~F~~~~~qR~Pr~R---~G~~HvvNN~y~nw~~Yaigg~~~~~I~se 360 (447)
++.... ..++-||+--+. ..+...+|+|.++.|. + ..+.=|++ .|.-.|-|=.|.|..|... ..| |.+.
T Consensus 245 ~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~-~-t~~GirIKt~~G~~G~v~nItf~nI~m~~v---~~p-I~I~ 317 (409)
T PLN03010 245 QINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFN-Q-TTNGARIKTWQGGQGYARNISFENITLINT---KNP-IIID 317 (409)
T ss_pred EEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEe-C-CCcceEEEEecCCCEEEEEeEEEeEEEecC---Ccc-EEEE
Confidence 776642 234567764322 2344678999999993 3 34555554 2334455555666554332 233 5555
Q ss_pred ccEEe
Q 013239 361 GNRYL 365 (447)
Q Consensus 361 gN~F~ 365 (447)
.+|..
T Consensus 318 q~Y~~ 322 (409)
T PLN03010 318 QQYID 322 (409)
T ss_pred eeccC
Confidence 55543
No 17
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.52 E-value=0.0093 Score=57.18 Aligned_cols=107 Identities=25% Similarity=0.238 Sum_probs=66.5
Q ss_pred eEEEeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEeecCceEEEEeeEeecCCCCeEEeeeCCceEEE
Q 013239 204 CITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITV 283 (447)
Q Consensus 204 gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~~~DGliDi~~gS~~ITI 283 (447)
||.+..+++++|++-.|+++ .+||.+..+.+..|..+.|+....|. -+ .++...||
T Consensus 59 GI~~~~s~~~~i~~n~i~~n----------------------~~Gi~l~~s~~~~I~~N~i~~n~~GI-~l-~~s~~~~I 114 (236)
T PF05048_consen 59 GIHLMGSSNNTIENNTISNN----------------------GYGIYLMGSSNNTISNNTISNNGYGI-YL-YGSSNNTI 114 (236)
T ss_pred EEEEEccCCCEEEeEEEEcc----------------------CCCEEEEcCCCcEEECCEecCCCceE-EE-eeCCceEE
Confidence 45555666666666666532 27777777776688888888877744 44 45667788
Q ss_pred EcceeccCCeeeEecCCCCccCCccceEEEEeeEecCCCcCCCce-ecc-CeEEEEcceeeC
Q 013239 284 SNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPR-CRH-GYFHVVNNDYTH 343 (447)
Q Consensus 284 Snn~f~~H~k~mLiG~sD~~~~d~~~~VTihhN~F~~~~~qR~Pr-~R~-G~~HvvNN~y~n 343 (447)
++|.|.+...++.+-.+. +.++.+|.|. ++..---. +.. ....+++|.|.+
T Consensus 115 ~~N~i~~~~~GI~l~~s~--------~n~I~~N~i~-~n~~~Gi~~~~~s~~n~I~~N~f~N 167 (236)
T PF05048_consen 115 SNNTISNNGYGIYLSSSS--------NNTITGNTIS-NNTDYGIYFLSGSSGNTIYNNNFNN 167 (236)
T ss_pred ECcEEeCCCEEEEEEeCC--------CCEEECeEEe-CCCccceEEeccCCCCEEECCCccC
Confidence 888887666666654432 5677778774 33222222 222 346777777733
No 18
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.49 E-value=0.0016 Score=56.58 Aligned_cols=131 Identities=21% Similarity=0.210 Sum_probs=77.6
Q ss_pred CceEEEeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEeecCceEEEEeeEeecCCCCeEEeeeCCceE
Q 013239 202 GACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAI 281 (447)
Q Consensus 202 G~gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~~~DGliDi~~gS~~I 281 (447)
+.+|.+...+++.|++-+|++ .+.+|.+.+..++.|+.|.|+.+. ..+.+ ..+..+
T Consensus 23 ~~gi~~~~~~~~~i~n~~i~~----------------------~~~gi~~~~~~~~~i~~~~~~~~~-~~i~~-~~~~~~ 78 (158)
T PF13229_consen 23 GDGIHVSGSSNITIENCTISN----------------------GGYGIYVSGGSNVTISNNTISDNG-SGIYV-SGSSNI 78 (158)
T ss_dssp SECEEE-SSCESEEES-EEES----------------------STTSEEEECCES-EEES-EEES-S-EEEEC-CS-CS-
T ss_pred CeEEEEEcCCCeEEECeEEEC----------------------CCcEEEEecCCCeEEECeEEEEcc-ceEEE-EecCCc
Confidence 456788777888888888874 357788888899999999999888 55566 478899
Q ss_pred EEEcceeccCCe-eeEecCCCCccCCccceEEEEeeEecCCCcCCCceecc-C--eEEEEcceeeCceeeeeecCCCce-
Q 013239 282 TVSNNYFTHHNE-VMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRH-G--YFHVVNNDYTHWVMYAIGGSANPT- 356 (447)
Q Consensus 282 TISnn~f~~H~k-~mLiG~sD~~~~d~~~~VTihhN~F~~~~~qR~Pr~R~-G--~~HvvNN~y~nw~~Yaigg~~~~~- 356 (447)
+|++|.|.+... ++.+.. ....+++.+|.|. ++.+-.=.+.. . .+-+.||.+++-..+++.......
T Consensus 79 ~i~~~~i~~~~~~gi~~~~-------~~~~~~i~~n~~~-~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~ 150 (158)
T PF13229_consen 79 TIENNRIENNGDYGIYISN-------SSSNVTIENNTIH-NNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSN 150 (158)
T ss_dssp EEES-EEECSSS-SCE-TC-------EECS-EEES-EEE-CCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS-
T ss_pred eecCcEEEcCCCccEEEec-------cCCCEEEEeEEEE-eCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCe
Confidence 999999987654 444432 1236888888883 34433323332 2 566788888887777775444444
Q ss_pred EEEeccEE
Q 013239 357 INSQGNRY 364 (447)
Q Consensus 357 I~segN~F 364 (447)
+.+.+|.|
T Consensus 151 ~~v~~n~~ 158 (158)
T PF13229_consen 151 CTVTNNTF 158 (158)
T ss_dssp -EEES-E-
T ss_pred EEEECCCC
Confidence 77778876
No 19
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.46 E-value=0.011 Score=62.04 Aligned_cols=175 Identities=12% Similarity=0.134 Sum_probs=129.4
Q ss_pred hhhhhcCCCCeEEEEeeceEEEeCceEEecCCcEEEccCceEEEe--cCceEEE---------eccccEEEEceEEEecc
Q 013239 156 LRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIA--NGACITI---------QFITNVIIHGINIHDCK 224 (447)
Q Consensus 156 LR~Av~q~~P~~IVF~~~g~I~L~~~L~I~SnkTI~G~gA~~~I~--~G~gi~i---------~~a~NVIIRnL~i~~~~ 224 (447)
|-.|+.+-. -|..+-+-+-++++++.|.+..+|+|+||-+.|. ++.+|.+ .+-.+|.+.|++|...
T Consensus 57 le~~I~~ha--KVaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~- 133 (386)
T PF01696_consen 57 LEEAIRQHA--KVALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGR- 133 (386)
T ss_pred HHHHHHhcC--EEEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecC-
Confidence 777776643 3556666677788999999999999999999884 4445654 3568999999999842
Q ss_pred CCCCcccccCCCCcCCcccCCCCeEEeecCceEEEEeeEeecCCCCeEEeeeCCceEEEEcceeccCCeeeEecCCCCcc
Q 013239 225 PTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYT 304 (447)
Q Consensus 225 pg~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~~~DGliDi~~gS~~ITISnn~f~~H~k~mLiG~sD~~~ 304 (447)
..--++-+...+++.|.-|+|....-=.++.. ....|..|+|..-+|++ .+.
T Consensus 134 -------------------~~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi-~~~----- 185 (386)
T PF01696_consen 134 -------------------DTFSGVVFHANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGI-VSR----- 185 (386)
T ss_pred -------------------CccceeEEEecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEe-ecC-----
Confidence 12467788899999999999999888888874 47789999998887775 332
Q ss_pred CCccceEEEEeeEecCCCcCCCceeccCeEEEEcceeeCceeeeeecCCCceEEEeccEEeCCCC
Q 013239 305 RDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAPEN 369 (447)
Q Consensus 305 ~d~~~~VTihhN~F~~~~~qR~Pr~R~G~~HvvNN~y~nw~~Yaigg~~~~~I~segN~F~a~~~ 369 (447)
++.++++.+|.| +.+.==. +-.|..++-+|...+-.-..+- ..+-.+.+|.|..+..
T Consensus 186 --~~~~lsVk~C~F-ekC~igi--~s~G~~~i~hn~~~ec~Cf~l~---~g~g~i~~N~v~~~~~ 242 (386)
T PF01696_consen 186 --GKSKLSVKKCVF-EKCVIGI--VSEGPARIRHNCASECGCFVLM---KGTGSIKHNMVCGPND 242 (386)
T ss_pred --CcceEEeeheee-eheEEEE--EecCCeEEecceecccceEEEE---cccEEEeccEEeCCCC
Confidence 245788999999 5443222 2358899999999886543332 2245667999987766
No 20
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.35 E-value=0.0057 Score=56.78 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=26.0
Q ss_pred hhhhh---cCCCCeEEEEeeceEEEeCceEEecCCcEEEccCc
Q 013239 156 LRHAV---IQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGV 195 (447)
Q Consensus 156 LR~Av---~q~~P~~IVF~~~g~I~L~~~L~I~SnkTI~G~gA 195 (447)
|..|+ ...+..+|.|- .|+..+++.|.+.+++||.|.|.
T Consensus 21 iq~Ai~~~~~~~g~~v~~P-~G~Y~i~~~l~~~s~v~l~G~g~ 62 (225)
T PF12708_consen 21 IQAAIDAAAAAGGGVVYFP-PGTYRISGTLIIPSNVTLRGAGG 62 (225)
T ss_dssp HHHHHHHHCSTTSEEEEE--SEEEEESS-EEE-TTEEEEESST
T ss_pred HHHhhhhcccCCCeEEEEc-CcEEEEeCCeEcCCCeEEEccCC
Confidence 77777 23444555554 56888888888888999998765
No 21
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.34 E-value=0.004 Score=66.72 Aligned_cols=119 Identities=16% Similarity=0.290 Sum_probs=86.6
Q ss_pred CeEEEEeeceEEEeCceEEecCCcEEEccCceEEE---ecCceEEEeccccEEEEceEEEeccCCCCcccccCCCCcCCc
Q 013239 165 PLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHI---ANGACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWR 241 (447)
Q Consensus 165 P~~IVF~~~g~I~L~~~L~I~SnkTI~G~gA~~~I---~~G~gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r 241 (447)
..||.|..- +.|.|...=||+|+|..-.- ..-..|.+.+++||.|++|++++.
T Consensus 104 ~~wI~f~~~------~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NS------------------ 159 (456)
T PLN03003 104 DQWILFTDI------EGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDS------------------ 159 (456)
T ss_pred cceEEEEcc------cceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecC------------------
Confidence 358888642 23555444589999854210 001257788999999999999963
Q ss_pred ccCCCCeEEeecCceEEEEeeEeec-----CCCCeEEeeeCCceEEEEcceeccCCeeeEecCCCCccCCccceEEEEee
Q 013239 242 TMADGDAISIFGSSHIWIDHNSLSN-----CADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYN 316 (447)
Q Consensus 242 ~~~d~DaIsI~gs~nVWIDHcS~S~-----~~DGliDi~~gS~~ITISnn~f~~H~k~mLiG~sD~~~~d~~~~VTihhN 316 (447)
..=.|.+.+++||.|++.++.. -.||. |+ ..+++|+|.+|.|..-+...-++... .+|++.++
T Consensus 160 ---p~w~i~i~~c~nV~i~~l~I~ap~~spNTDGI-Di-~~S~nV~I~n~~I~tGDDCIaiksgs-------~NI~I~n~ 227 (456)
T PLN03003 160 ---PMAHIHISECNYVTISSLRINAPESSPNTDGI-DV-GASSNVVIQDCIIATGDDCIAINSGT-------SNIHISGI 227 (456)
T ss_pred ---CcEEEEEeccccEEEEEEEEeCCCCCCCCCcE-ee-cCcceEEEEecEEecCCCeEEeCCCC-------ccEEEEee
Confidence 2245788899999999999975 46876 88 77999999999999988888777542 26677777
Q ss_pred Eec
Q 013239 317 HFG 319 (447)
Q Consensus 317 ~F~ 319 (447)
.++
T Consensus 228 ~c~ 230 (456)
T PLN03003 228 DCG 230 (456)
T ss_pred EEE
Confidence 663
No 22
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.32 E-value=0.011 Score=63.04 Aligned_cols=100 Identities=12% Similarity=0.130 Sum_probs=64.3
Q ss_pred chhhhhcCCC-C-eEEEEeeceEEEeCceEEecCCcEEEccCceE--EEecCceEE-EeccccEEEEceEEEeccCCCCc
Q 013239 155 TLRHAVIQDR-P-LWIVFKRDMVITLKQELIMNSFKTIDGRGVNV--HIANGACIT-IQFITNVIIHGINIHDCKPTGNA 229 (447)
Q Consensus 155 tLR~Av~q~~-P-~~IVF~~~g~I~L~~~L~I~SnkTI~G~gA~~--~I~~G~gi~-i~~a~NVIIRnL~i~~~~pg~~~ 229 (447)
.|+.|+.+-. | -.|++... +. +...|.+.+++||.|+.... .|.++.++. -..++||-|++++|++. +
T Consensus 56 ALQaAIdaAa~gG~tV~Lp~G-~Y-~~G~L~L~spltL~G~~gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGs--G--- 128 (455)
T TIGR03808 56 ALQRAIDEAARAQTPLALPPG-VY-RTGPLRLPSGAQLIGVRGATRLVFTGGPSLLSSEGADGIGLSGLTLDGG--G--- 128 (455)
T ss_pred HHHHHHHHhhcCCCEEEECCC-ce-ecccEEECCCcEEEecCCcEEEEEcCCceEEEEecCCCeEEEeeEEEeC--C---
Confidence 3777776522 1 23555432 22 23668888999999985432 243333333 34799999999999863 1
Q ss_pred ccccCCCCcCCcccCCCCeEEeecCceEEEEeeEeecCC-CCe
Q 013239 230 MVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCA-DGL 271 (447)
Q Consensus 230 ~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~~~-DGl 271 (447)
.......-+|.+.+++++-|.+|.|.... .|.
T Consensus 129 ----------~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI 161 (455)
T TIGR03808 129 ----------IPLPQRRGLIHCQGGRDVRITDCEITGSGGNGI 161 (455)
T ss_pred ----------CcccCCCCEEEEccCCceEEEeeEEEcCCcceE
Confidence 01112345788889999999999999874 554
No 23
>PLN02155 polygalacturonase
Probab=97.29 E-value=0.0084 Score=63.22 Aligned_cols=117 Identities=19% Similarity=0.346 Sum_probs=84.5
Q ss_pred eEEEEeeceEEEeCceEEecCCcEEEccCceEEEe--cC-------ceEEEeccccEEEEceEEEeccCCCCcccccCCC
Q 013239 166 LWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIA--NG-------ACITIQFITNVIIHGINIHDCKPTGNAMVRSSPS 236 (447)
Q Consensus 166 ~~IVF~~~g~I~L~~~L~I~SnkTI~G~gA~~~I~--~G-------~gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~ 236 (447)
.||.|..- +.+.|.. =||+|||..---. .+ ..|.+..++||.|++|++++.
T Consensus 107 ~wi~~~~~------~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nS------------- 166 (394)
T PLN02155 107 YWILFNKV------NRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNS------------- 166 (394)
T ss_pred eeEEEECc------CCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcC-------------
Confidence 47777542 2345544 6899998642110 01 247788999999999999963
Q ss_pred CcCCcccCCCCeEEeecCceEEEEeeEeec-----CCCCeEEeeeCCceEEEEcceeccCCeeeEecCCCCccCCccceE
Q 013239 237 HYGWRTMADGDAISIFGSSHIWIDHNSLSN-----CADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQV 311 (447)
Q Consensus 237 ~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~-----~~DGliDi~~gS~~ITISnn~f~~H~k~mLiG~sD~~~~d~~~~V 311 (447)
..=.|.+.+++||.|+|.++.. -.||. |+ ..+++|+|++|.|..-+....++... -+|
T Consensus 167 --------p~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGi-di-~~s~nV~I~~~~I~~gDDcIaik~gs-------~nI 229 (394)
T PLN02155 167 --------QVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGF-HV-QFSTGVTFTGSTVQTGDDCVAIGPGT-------RNF 229 (394)
T ss_pred --------CCeEEEEECeeeEEEEEEEEECCCCCCCCCcc-cc-ccceeEEEEeeEEecCCceEEcCCCC-------ceE
Confidence 1235778899999999999965 35776 87 67999999999999988888887542 267
Q ss_pred EEEeeEec
Q 013239 312 TIAYNHFG 319 (447)
Q Consensus 312 TihhN~F~ 319 (447)
++.++.+.
T Consensus 230 ~I~n~~c~ 237 (394)
T PLN02155 230 LITKLACG 237 (394)
T ss_pred EEEEEEEE
Confidence 77776664
No 24
>PLN03010 polygalacturonase
Probab=97.26 E-value=0.02 Score=60.79 Aligned_cols=150 Identities=21% Similarity=0.267 Sum_probs=94.2
Q ss_pred cEEEccCceEEEecCceEEEeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEeecCceEEEEeeEeec-
Q 013239 188 KTIDGRGVNVHIANGACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSN- 266 (447)
Q Consensus 188 kTI~G~gA~~~I~~G~gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~- 266 (447)
=||+|+|..- - ..|.+.+++||.|++|++++. ..=.|.+.+++||.|++..+..
T Consensus 147 G~IDG~G~~w--w--~~l~~~~~~nv~v~gitl~ns---------------------p~~~i~i~~~~nv~i~~i~I~a~ 201 (409)
T PLN03010 147 GTIDGRGSSF--W--EALHISKCDNLTINGITSIDS---------------------PKNHISIKTCNYVAISKINILAP 201 (409)
T ss_pred eEEeCCCccc--c--ceEEEEeecCeEEeeeEEEcC---------------------CceEEEEeccccEEEEEEEEeCC
Confidence 3566665431 0 147788999999999999963 1234788899999999999864
Q ss_pred ----CCCCeEEeeeCCceEEEEcceeccCCeeeEecCCCCccCCccceEEEEeeEecCCC----cCCCce-eccCeEEEE
Q 013239 267 ----CADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGL----IQRMPR-CRHGYFHVV 337 (447)
Q Consensus 267 ----~~DGliDi~~gS~~ITISnn~f~~H~k~mLiG~sD~~~~d~~~~VTihhN~F~~~~----~qR~Pr-~R~G~~Hvv 337 (447)
-.||. |+ ..+++|+|++|.|..-+...-+....+ ...|+...+..+++. ...... --.-.++|-
T Consensus 202 ~~s~NTDGi-Di-~~s~nV~I~n~~I~~gDDcIaiksgs~-----ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~ 274 (409)
T PLN03010 202 ETSPNTDGI-DI-SYSTNINIFDSTIQTGDDCIAINSGSS-----NINITQINCGPGHGISVGSLGADGANAKVSDVHVT 274 (409)
T ss_pred CCCCCCCce-ee-eccceEEEEeeEEecCCCeEEecCCCC-----cEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEE
Confidence 56876 88 679999999999999988888875421 235555555444321 111000 001245677
Q ss_pred cceeeCceeeeee-----cC--CCceEEEeccEEeCCCCc
Q 013239 338 NNDYTHWVMYAIG-----GS--ANPTINSQGNRYLAPENT 370 (447)
Q Consensus 338 NN~y~nw~~Yaig-----g~--~~~~I~segN~F~a~~~~ 370 (447)
|+.+++-. +++. ++ .-..|.+++-.+.....|
T Consensus 275 n~~i~~t~-~GirIKt~~G~~G~v~nItf~nI~m~~v~~p 313 (409)
T PLN03010 275 HCTFNQTT-NGARIKTWQGGQGYARNISFENITLINTKNP 313 (409)
T ss_pred eeEEeCCC-cceEEEEecCCCEEEEEeEEEeEEEecCCcc
Confidence 77766521 1111 11 112467777777766554
No 25
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.25 E-value=0.0032 Score=64.28 Aligned_cols=108 Identities=21% Similarity=0.354 Sum_probs=76.3
Q ss_pred EEecCCcEEEccCceEEEec----------CceEEEeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEe
Q 013239 182 LIMNSFKTIDGRGVNVHIAN----------GACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISI 251 (447)
Q Consensus 182 L~I~SnkTI~G~gA~~~I~~----------G~gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI 251 (447)
+.+.-.=||+|+|..=.-.. -..|.+.+++|+.|++|+|++.. .| .+.+
T Consensus 62 i~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp--------------~w-------~~~~ 120 (326)
T PF00295_consen 62 ITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSP--------------FW-------HIHI 120 (326)
T ss_dssp EECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-S--------------SE-------SEEE
T ss_pred EEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCC--------------ee-------EEEE
Confidence 44544469999987210000 12477889999999999999631 12 5788
Q ss_pred ecCceEEEEeeEeec-----CCCCeEEeeeCCceEEEEcceeccCCeeeEecCCCCccCCccceEEEEeeEec
Q 013239 252 FGSSHIWIDHNSLSN-----CADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFG 319 (447)
Q Consensus 252 ~gs~nVWIDHcS~S~-----~~DGliDi~~gS~~ITISnn~f~~H~k~mLiG~sD~~~~d~~~~VTihhN~F~ 319 (447)
..++||+|+|.++.. -.||. |+ .++++|+|.+|.|...+...-+.+... .|++.+++|.
T Consensus 121 ~~~~nv~i~~i~I~~~~~~~NtDGi-d~-~~s~nv~I~n~~i~~gDD~Iaiks~~~-------ni~v~n~~~~ 184 (326)
T PF00295_consen 121 NDCDNVTISNITINNPANSPNTDGI-DI-DSSKNVTIENCFIDNGDDCIAIKSGSG-------NILVENCTCS 184 (326)
T ss_dssp ESEEEEEEESEEEEEGGGCTS--SE-EE-ESEEEEEEESEEEESSSESEEESSEEC-------EEEEESEEEE
T ss_pred EccCCeEEcceEEEecCCCCCcceE-EE-EeeeEEEEEEeecccccCccccccccc-------ceEEEeEEEe
Confidence 899999999999874 36786 88 678999999999999888877765421 7888888884
No 26
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.19 E-value=0.018 Score=55.21 Aligned_cols=129 Identities=23% Similarity=0.173 Sum_probs=95.2
Q ss_pred ceEEEeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEeecCceEEEEeeEeecCCCCeEEeeeCCceEE
Q 013239 203 ACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAIT 282 (447)
Q Consensus 203 ~gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~~~DGliDi~~gS~~IT 282 (447)
.++.+..+.++.|++.+|++. ..||.+.+++++-|..|.++.+.+|. .+ ..+.+.+
T Consensus 36 ~gi~~~~s~~~~I~~n~i~~~----------------------~~GI~~~~s~~~~i~~n~i~~n~~Gi-~l-~~s~~~~ 91 (236)
T PF05048_consen 36 DGIYVENSDNNTISNNTISNN----------------------RYGIHLMGSSNNTIENNTISNNGYGI-YL-MGSSNNT 91 (236)
T ss_pred CEEEEEEcCCeEEEeeEEECC----------------------CeEEEEEccCCCEEEeEEEEccCCCE-EE-EcCCCcE
Confidence 456777899999999998842 57899999999999999999999775 55 3455559
Q ss_pred EEcceeccCCeeeEecCCCCccCCccceEEEEeeEecCCCcCCCceecc-CeEEEEcceeeCceeeeee-cCCCceEEEe
Q 013239 283 VSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRH-GYFHVVNNDYTHWVMYAIG-GSANPTINSQ 360 (447)
Q Consensus 283 ISnn~f~~H~k~mLiG~sD~~~~d~~~~VTihhN~F~~~~~qR~Pr~R~-G~~HvvNN~y~nw~~Yaig-g~~~~~I~se 360 (447)
|++|.|.+...++++-.+. ..++..|.|. ....--.+.. ....+.+|.+.+-..|+|- ......-.+.
T Consensus 92 I~~N~i~~n~~GI~l~~s~--------~~~I~~N~i~--~~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~ 161 (236)
T PF05048_consen 92 ISNNTISNNGYGIYLYGSS--------NNTISNNTIS--NNGYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIY 161 (236)
T ss_pred EECCEecCCCceEEEeeCC--------ceEEECcEEe--CCCEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEE
Confidence 9999999877677665443 4688899883 3333334443 5678889999887667766 3344456677
Q ss_pred ccEEe
Q 013239 361 GNRYL 365 (447)
Q Consensus 361 gN~F~ 365 (447)
+|+|.
T Consensus 162 ~N~f~ 166 (236)
T PF05048_consen 162 NNNFN 166 (236)
T ss_pred CCCcc
Confidence 99993
No 27
>PLN02793 Probable polygalacturonase
Probab=96.92 E-value=0.023 Score=60.86 Aligned_cols=118 Identities=15% Similarity=0.266 Sum_probs=84.1
Q ss_pred eEEEEeeceEEEeCceEEecCCcEEEccCceEE-----Eec-------CceEEEeccccEEEEceEEEeccCCCCccccc
Q 013239 166 LWIVFKRDMVITLKQELIMNSFKTIDGRGVNVH-----IAN-------GACITIQFITNVIIHGINIHDCKPTGNAMVRS 233 (447)
Q Consensus 166 ~~IVF~~~g~I~L~~~L~I~SnkTI~G~gA~~~-----I~~-------G~gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~ 233 (447)
.||.|... +.|.|...=||+|+|..-. +.. -..|.+.+++||.|++|++++.
T Consensus 135 ~~i~~~~~------~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nS---------- 198 (443)
T PLN02793 135 KWLYFHGV------NHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDS---------- 198 (443)
T ss_pred eEEEEecC------ceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcC----------
Confidence 47776532 2344533458888885321 000 1246788999999999999963
Q ss_pred CCCCcCCcccCCCCeEEeecCceEEEEeeEeec-----CCCCeEEeeeCCceEEEEcceeccCCeeeEecCCCCccCCcc
Q 013239 234 SPSHYGWRTMADGDAISIFGSSHIWIDHNSLSN-----CADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKV 308 (447)
Q Consensus 234 s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~-----~~DGliDi~~gS~~ITISnn~f~~H~k~mLiG~sD~~~~d~~ 308 (447)
..=.|.+.+++||.|++.++.. -.||. |+ ..+++|+|++|.|..-+....+....
T Consensus 199 -----------p~~~i~~~~~~nv~i~~l~I~~p~~spNTDGI-di-~~s~nV~I~n~~I~~gDDcIaik~~s------- 258 (443)
T PLN02793 199 -----------QQMHIAFTNCRRVTISGLKVIAPATSPNTDGI-HI-SASRGVVIKDSIVRTGDDCISIVGNS------- 258 (443)
T ss_pred -----------CCeEEEEEccCcEEEEEEEEECCCCCCCCCcE-ee-eccceEEEEeCEEeCCCCeEEecCCc-------
Confidence 1234678899999999999975 46776 88 77999999999999988888776431
Q ss_pred ceEEEEeeEec
Q 013239 309 MQVTIAYNHFG 319 (447)
Q Consensus 309 ~~VTihhN~F~ 319 (447)
.+|+|.++.+.
T Consensus 259 ~nI~I~n~~c~ 269 (443)
T PLN02793 259 SRIKIRNIACG 269 (443)
T ss_pred CCEEEEEeEEe
Confidence 27788777763
No 28
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=96.76 E-value=0.066 Score=57.37 Aligned_cols=158 Identities=19% Similarity=0.179 Sum_probs=89.7
Q ss_pred cEEEccCceEEEecCceEEEeccccEEEEceEEEecc-CC-----CCcccccCCCCcCCcccCCCCeEEeecCceEEEEe
Q 013239 188 KTIDGRGVNVHIANGACITIQFITNVIIHGINIHDCK-PT-----GNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDH 261 (447)
Q Consensus 188 kTI~G~gA~~~I~~G~gi~i~~a~NVIIRnL~i~~~~-pg-----~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDH 261 (447)
+||+|.|.+-.-. -.+|.++.++++.|++.+|++.- -+ ..+.|.+..- ......+|.+..++++.|.+
T Consensus 122 LtIdGsG~dl~~r-dAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I-----~g~~~~~I~lw~S~g~~V~~ 195 (455)
T TIGR03808 122 LTLDGGGIPLPQR-RGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTI-----TQIAVTAIVSFDALGLIVAR 195 (455)
T ss_pred eEEEeCCCcccCC-CCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceE-----eccccceEEEeccCCCEEEC
Confidence 3666666543212 23677889999999999998751 00 0111111110 01123448888888999999
Q ss_pred eEeecCCCCeEEeee-----------------------------------CCceEEEEcceeccCCeeeEecCCCCccCC
Q 013239 262 NSLSNCADGLIDAIM-----------------------------------GSTAITVSNNYFTHHNEVMLLGHSDSYTRD 306 (447)
Q Consensus 262 cS~S~~~DGliDi~~-----------------------------------gS~~ITISnn~f~~H~k~mLiG~sD~~~~d 306 (447)
+.++.+.|+.|-+.+ .+.+++|+.|.+.++.+--+.+.+.+
T Consensus 196 N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss---- 271 (455)
T TIGR03808 196 NTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSAS---- 271 (455)
T ss_pred CEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEccc----
Confidence 999998886555432 25688888888888774334443322
Q ss_pred ccceEEEEeeEecCCCcCCCceecc-C----e----EEEEcceeeC-ceeeeeec-CCCce-EEEeccEEeC
Q 013239 307 KVMQVTIAYNHFGEGLIQRMPRCRH-G----Y----FHVVNNDYTH-WVMYAIGG-SANPT-INSQGNRYLA 366 (447)
Q Consensus 307 ~~~~VTihhN~F~~~~~qR~Pr~R~-G----~----~HvvNN~y~n-w~~Yaigg-~~~~~-I~segN~F~a 366 (447)
++.|..|.| + ++|+ | + .-+.||.+++ -..|++.. .++.. ...+||...+
T Consensus 272 ---~~~i~~N~~-~-------~~R~~alhymfs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn 332 (455)
T TIGR03808 272 ---NIQITGNSV-S-------DVREVALYSEFAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRN 332 (455)
T ss_pred ---CcEEECcEe-e-------eeeeeEEEEEEeCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeec
Confidence 445555555 2 2343 2 1 2355666654 23566542 12233 3456666653
No 29
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=96.74 E-value=0.03 Score=59.26 Aligned_cols=117 Identities=20% Similarity=0.304 Sum_probs=84.6
Q ss_pred eEEEEeeceEEEeCceEEecCCcEEEccCceEE------Ee-c----CceEEEeccccEEEEceEEEeccCCCCcccccC
Q 013239 166 LWIVFKRDMVITLKQELIMNSFKTIDGRGVNVH------IA-N----GACITIQFITNVIIHGINIHDCKPTGNAMVRSS 234 (447)
Q Consensus 166 ~~IVF~~~g~I~L~~~L~I~SnkTI~G~gA~~~------I~-~----G~gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s 234 (447)
.||.|.. + ..|.|...=||+|+|..-- .. + -..|.+..++||.|++|+|++.
T Consensus 114 ~~i~~~~-----~-~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nS----------- 176 (404)
T PLN02188 114 DWIEFGW-----V-NGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNS----------- 176 (404)
T ss_pred ceEEEec-----e-eeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcC-----------
Confidence 4787742 1 2355655678899886311 00 0 1246778999999999999963
Q ss_pred CCCcCCcccCCCCeEEeecCceEEEEeeEeec-----CCCCeEEeeeCCceEEEEcceeccCCeeeEecCCCCccCCccc
Q 013239 235 PSHYGWRTMADGDAISIFGSSHIWIDHNSLSN-----CADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVM 309 (447)
Q Consensus 235 ~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~-----~~DGliDi~~gS~~ITISnn~f~~H~k~mLiG~sD~~~~d~~~ 309 (447)
..=.|.+..++||.|++.++.. -.||. |+ ..+++|+|.+|.|..-+...-++... -
T Consensus 177 ----------p~w~i~~~~~~~v~i~~v~I~~~~~spNtDGi-di-~~s~nV~I~n~~I~~GDDcIaiksg~-------~ 237 (404)
T PLN02188 177 ----------KFFHIALVECRNFKGSGLKISAPSDSPNTDGI-HI-ERSSGVYISDSRIGTGDDCISIGQGN-------S 237 (404)
T ss_pred ----------CCeEEEEEccccEEEEEEEEeCCCCCCCCCcE-ee-eCcccEEEEeeEEeCCCcEEEEccCC-------c
Confidence 2235788899999999999875 46776 88 77999999999999988888886432 2
Q ss_pred eEEEEeeEe
Q 013239 310 QVTIAYNHF 318 (447)
Q Consensus 310 ~VTihhN~F 318 (447)
+|++-++.+
T Consensus 238 nI~I~n~~c 246 (404)
T PLN02188 238 QVTITRIRC 246 (404)
T ss_pred cEEEEEEEE
Confidence 677777666
No 30
>PLN02480 Probable pectinesterase
Probab=96.70 E-value=0.036 Score=57.54 Aligned_cols=119 Identities=19% Similarity=0.297 Sum_probs=76.8
Q ss_pred chhhhhcC----CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEE-Eec---------CceEEEeccccEEEEc
Q 013239 155 TLRHAVIQ----DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVH-IAN---------GACITIQFITNVIIHG 217 (447)
Q Consensus 155 tLR~Av~q----~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~-I~~---------G~gi~i~~a~NVIIRn 217 (447)
||.+||.+ +..+++||=..|+-+ +.|.| .+|+||.|.+...+ |.. +..+++ .+++++++|
T Consensus 62 TIQ~AIdaap~~~~~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV-~a~~f~a~n 138 (343)
T PLN02480 62 SVQSAIDAVPVGNSEWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTV-EAPHFVAFG 138 (343)
T ss_pred cHHHHHhhCccCCCceEEEEEcCcEEE--EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEE-ECCCEEEEe
Confidence 78888854 234566665566654 56777 56799999875433 331 223444 589999999
Q ss_pred eEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecCCCCeEEeeeCCceEEEEcceeccC
Q 013239 218 INIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTHH 291 (447)
Q Consensus 218 L~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~DGliDi~~gS~~ITISnn~f~~H 291 (447)
|+|++..+.+. ....+.-|+-+. .+.++-+.+|.|.-..|=|++- ...--+.+|++..+
T Consensus 139 LTf~Nta~~g~------------~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~C~IeG~ 198 (343)
T PLN02480 139 ISIRNDAPTGM------------AFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDY---KGRHYYHSCYIQGS 198 (343)
T ss_pred eEEEecCCCCC------------CCCCCCceEEEEecCCcEEEEeeEEecccceeEeC---CCCEEEEeCEEEee
Confidence 99998643110 011234566664 6899999999999888887753 23445556666543
No 31
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=96.31 E-value=0.082 Score=57.98 Aligned_cols=104 Identities=17% Similarity=0.184 Sum_probs=73.5
Q ss_pred ceEEEeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEeecCceEEEEeeEeecCCCCeEEee-------
Q 013239 203 ACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAI------- 275 (447)
Q Consensus 203 ~gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~~~DGliDi~------- 275 (447)
.++..+.++|+.|+||+|..-.+ ...|||-+..++||-|+-|.|+.+ |-.|-++
T Consensus 262 ~~~h~~~~~nl~~~nl~I~~~~~------------------~NtDG~d~~sc~NvlI~~~~fdtg-DD~I~iksg~~~~~ 322 (542)
T COG5434 262 WTVHPVDCDNLTFRNLTIDANRF------------------DNTDGFDPGSCSNVLIEGCRFDTG-DDCIAIKSGAGLDG 322 (542)
T ss_pred EEEeeecccCceecceEEECCCC------------------CCCCccccccceeEEEeccEEecC-CceEEeecccCCcc
Confidence 35667799999999999985321 257999999999999999999984 3333443
Q ss_pred ----eCCceEEEEcceeccCCeeeEecCCCCccCCccceEEEEeeEecCCCcCCCceec
Q 013239 276 ----MGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCR 330 (447)
Q Consensus 276 ----~gS~~ITISnn~f~~H~k~mLiG~sD~~~~d~~~~VTihhN~F~~~~~qR~Pr~R 330 (447)
..+.+|+|++|+|..-.-+..+|.. ...+...|++-.|.| . ...|-=|++
T Consensus 323 ~~~~~~~~~i~i~~c~~~~ghG~~v~Gse---~~ggv~ni~ved~~~-~-~~d~GLRik 376 (542)
T COG5434 323 KKGYGPSRNIVIRNCYFSSGHGGLVLGSE---MGGGVQNITVEDCVM-D-NTDRGLRIK 376 (542)
T ss_pred cccccccccEEEecceecccccceEeeee---cCCceeEEEEEeeee-c-cCcceeeee
Confidence 2356899999999953334444532 122456889999999 3 356666664
No 32
>PLN02197 pectinesterase
Probab=96.22 E-value=0.21 Score=55.45 Aligned_cols=137 Identities=21% Similarity=0.255 Sum_probs=84.4
Q ss_pred Ccccccc--ccccccCcccccCccccCCCCeE---EEEcCCCCCCCCCCCCc---chhhhhcC----CCCeEEEEeeceE
Q 013239 108 DSRWYLR--RKRLADCAIGFGRNAIGGRDGRY---YVVSDPGDDDAVNPKPG---TLRHAVIQ----DRPLWIVFKRDMV 175 (447)
Q Consensus 108 ~~~w~~~--r~~lA~~A~GFG~~ttGG~gG~v---y~VT~~~D~~~~~~~pG---tLR~Av~q----~~P~~IVF~~~g~ 175 (447)
.|.|-.. |+.|+ +.+.|.++-||.++.+ ++|.- | |.| |+.+||.. ...++|||=+.|+
T Consensus 244 ~p~w~~~~~r~ll~--~~~~~~~~~~~~~~~~~~~~vVa~--d------GsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~Gv 313 (588)
T PLN02197 244 IPTWVSGADRKLMA--KAGRGANAGGGGGGKIKATHVVAK--D------GSGQFKTISQAVMACPDKNPGRCIIHIKAGI 313 (588)
T ss_pred CCCCCCccchhhhc--cCcccccccccccccccccEEEcC--C------CCCCcCCHHHHHHhccccCCceEEEEEeCce
Confidence 4788554 66663 3555667777776643 33321 2 444 78888854 3346667766677
Q ss_pred EEeCceEEe---cCCcEEEccCceEEEe---------cCce----EEE-eccccEEEEceEEEeccCCCCcccccCCCCc
Q 013239 176 ITLKQELIM---NSFKTIDGRGVNVHIA---------NGAC----ITI-QFITNVIIHGINIHDCKPTGNAMVRSSPSHY 238 (447)
Q Consensus 176 I~L~~~L~I---~SnkTI~G~gA~~~I~---------~G~g----i~i-~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~ 238 (447)
-+ +.+.| .+|+||.|.|...+|. +|.. =++ -.+++++.+||.|++-..
T Consensus 314 Y~--E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v~~~~F~a~nitf~Ntag------------- 378 (588)
T PLN02197 314 YN--EQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQVESEGFMAKWIGFKNTAG------------- 378 (588)
T ss_pred EE--EEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeEEEEECCcEEEEEeEEEeCCC-------------
Confidence 43 55666 4689999998765432 2211 011 268999999999998531
Q ss_pred CCcccCCCCeEEee-cCceEEEEeeEeecCCCCeEE
Q 013239 239 GWRTMADGDAISIF-GSSHIWIDHNSLSNCADGLID 273 (447)
Q Consensus 239 g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~DGliD 273 (447)
. .+.-|+-+. .+...-+.+|+|.-..|=|.+
T Consensus 379 -~---~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~ 410 (588)
T PLN02197 379 -P---MGHQAVAIRVNGDRAVIFNCRFDGYQDTLYV 410 (588)
T ss_pred -C---CCCceEEEEecCCcEEEEEeEEEecCcceEe
Confidence 0 123455554 578889999999876655543
No 33
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=95.97 E-value=0.21 Score=49.77 Aligned_cols=186 Identities=22% Similarity=0.203 Sum_probs=100.1
Q ss_pred chhhhhcCCCCeEEEEeeceEEEeC----ceEEecCCcEEEccCce-----EEEe--------cCc-------eEEEecc
Q 013239 155 TLRHAVIQDRPLWIVFKRDMVITLK----QELIMNSFKTIDGRGVN-----VHIA--------NGA-------CITIQFI 210 (447)
Q Consensus 155 tLR~Av~q~~P~~IVF~~~g~I~L~----~~L~I~SnkTI~G~gA~-----~~I~--------~G~-------gi~i~~a 210 (447)
||.+|+.+-.|-.+|+=..|+-.-. -+|.+.+.+||.|..+. +.+. +|. .++|..+
T Consensus 17 Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~~ 96 (246)
T PF07602_consen 17 TITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIILA 96 (246)
T ss_pred HHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEec
Confidence 6777776655444433344555432 24677777888775332 1111 121 2455567
Q ss_pred ccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEeecCceEEEEeeEeecC-CCCeEEee----eCCceEEEEc
Q 013239 211 TNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNC-ADGLIDAI----MGSTAITVSN 285 (447)
Q Consensus 211 ~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~~-~DGliDi~----~gS~~ITISn 285 (447)
++..|++++|++..+ ..+-||.|.++ +.-|..|+|+.+ .+|..... -...+++|+.
T Consensus 97 ~~~~i~GvtItN~n~------------------~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~G 157 (246)
T PF07602_consen 97 NNATISGVTITNPNI------------------ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISG 157 (246)
T ss_pred CCCEEEEEEEEcCCC------------------CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeec
Confidence 888899999986421 25678899877 888899999996 56643321 2345677787
Q ss_pred ceeccCCeeeEecCCCCccCCccceEEEEeeEecCCCcC------CCceeccC-eEEEEcceeeCceeeeeecCC--Cce
Q 013239 286 NYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQ------RMPRCRHG-YFHVVNNDYTHWVMYAIGGSA--NPT 356 (447)
Q Consensus 286 n~f~~H~k~mLiG~sD~~~~d~~~~VTihhN~F~~~~~q------R~Pr~R~G-~~HvvNN~y~nw~~Yaigg~~--~~~ 356 (447)
|.+.....+.-+- +.... ....+-+|++- ++.+ ..|-+..+ .-.+=||.+.+-+.|.+--.. .-+
T Consensus 158 N~~~~~~~Gi~i~--~~~~~---~~n~I~NN~I~-~N~~Gi~~~~~~pDlG~~s~~~~g~N~~~~N~~~Dl~~~~~~~~~ 231 (246)
T PF07602_consen 158 NSIYFNKTGISIS--DNAAP---VENKIENNIIE-NNNIGIVAIGDAPDLGTGSEGSPGNNIFRNNGRYDLNNSATPGQT 231 (246)
T ss_pred ceEEecCcCeEEE--cccCC---ccceeeccEEE-eCCcCeEeeccCCccccCCCCCCCCcEEecCcceeeEeccCCcee
Confidence 7766433322221 11111 11233455552 2111 11333321 223556777666666665422 235
Q ss_pred EEEeccEEe
Q 013239 357 INSQGNRYL 365 (447)
Q Consensus 357 I~segN~F~ 365 (447)
+++.||-..
T Consensus 232 l~a~gN~ld 240 (246)
T PF07602_consen 232 LYAVGNQLD 240 (246)
T ss_pred EEEeCCccC
Confidence 666776654
No 34
>smart00656 Amb_all Amb_all domain.
Probab=95.92 E-value=0.4 Score=45.62 Aligned_cols=137 Identities=21% Similarity=0.225 Sum_probs=81.5
Q ss_pred ecCCcEEEccCceEEEecCceEEEeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCe-EEee-cCceEEEEe
Q 013239 184 MNSFKTIDGRGVNVHIANGACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDA-ISIF-GSSHIWIDH 261 (447)
Q Consensus 184 I~SnkTI~G~gA~~~I~~G~gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~Da-IsI~-gs~nVWIDH 261 (447)
|--|++|.+-.... ..++-+|.+.+++||+|.|..|....+. +. .....|+ +.+. ++.+|=|-.
T Consensus 43 Iirnl~i~~~~~~~-~~~~D~i~~~~~~~VwIDHct~s~~~~~------------~~-~~~~~D~~~di~~~s~~vTvs~ 108 (190)
T smart00656 43 IIRNLTIHDPKPVY-GSDGDAISIDGSSNVWIDHVSLSGCTVT------------GF-GDDTYDGLIDIKNGSTYVTISN 108 (190)
T ss_pred EEeCCEEECCccCC-CCCCCEEEEeCCCeEEEEccEeEcceec------------cC-CCCCCCccEEECcccccEEEEC
Confidence 34577777753321 1135578888999999999999974211 10 0112344 3444 567777777
Q ss_pred eEeecCCCCeEEeeeCC------ceEEEEcceeccCCeeeEecCCCCccCCccceEEEEeeEecCCCcCCCceecc-CeE
Q 013239 262 NSLSNCADGLIDAIMGS------TAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRH-GYF 334 (447)
Q Consensus 262 cS~S~~~DGliDi~~gS------~~ITISnn~f~~H~k~mLiG~sD~~~~d~~~~VTihhN~F~~~~~qR~Pr~R~-G~~ 334 (447)
|.|....-+.+--...+ ..||+.+|+|.+.. +..+.- +.-++-+..|+| .+..+-.--++. +++
T Consensus 109 ~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~-----~R~P~~---r~g~~hv~NN~~-~n~~~~~~~~~~~~~v 179 (190)
T smart00656 109 NYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLR-----QRAPRV---RFGYVHVYNNYY-TGWTSYAIGGRMGATI 179 (190)
T ss_pred ceEecCCEEEEEccCCCccccccceEEEECcEEcCcc-----cCCCcc---cCCEEEEEeeEE-eCcccEeEecCCCcEE
Confidence 77765444333321111 27999999998642 221111 112788899999 455433333343 689
Q ss_pred EEEcceeeC
Q 013239 335 HVVNNDYTH 343 (447)
Q Consensus 335 HvvNN~y~n 343 (447)
.+-||||.+
T Consensus 180 ~~E~N~F~~ 188 (190)
T smart00656 180 LSEGNYFEA 188 (190)
T ss_pred EEECeEEEC
Confidence 999999986
No 35
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=95.11 E-value=0.55 Score=49.01 Aligned_cols=93 Identities=20% Similarity=0.195 Sum_probs=67.0
Q ss_pred EEecCCcEEEccCceEEEecCceEEEeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEeecCceEEEEe
Q 013239 182 LIMNSFKTIDGRGVNVHIANGACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDH 261 (447)
Q Consensus 182 L~I~SnkTI~G~gA~~~I~~G~gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDH 261 (447)
+.+....|-++.-.+-.|+...||.+.++.++.|..-+|.+-.. .|...-++||++.++..+-|--
T Consensus 100 I~v~~~at~A~Vr~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~--------------~r~~~rGnGI~vyNa~~a~V~~ 165 (408)
T COG3420 100 IFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLAD--------------LRVAERGNGIYVYNAPGALVVG 165 (408)
T ss_pred EEeccCcccceEEcccccccceEEEEeccCceEEEeeEEeeccc--------------cchhhccCceEEEcCCCcEEEc
Confidence 33444555444433323445678999999999999999986431 1234578999999999999999
Q ss_pred eEeecCCCCeEEeeeCCceEEEEcceecc
Q 013239 262 NSLSNCADGLIDAIMGSTAITVSNNYFTH 290 (447)
Q Consensus 262 cS~S~~~DGliDi~~gS~~ITISnn~f~~ 290 (447)
+.+|...||... .-|+.-+++.|.|.+
T Consensus 166 ndisy~rDgIy~--~~S~~~~~~gnr~~~ 192 (408)
T COG3420 166 NDISYGRDGIYS--DTSQHNVFKGNRFRD 192 (408)
T ss_pred CccccccceEEE--cccccceecccchhh
Confidence 999999999865 346666777777664
No 36
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=94.49 E-value=0.35 Score=53.26 Aligned_cols=113 Identities=13% Similarity=0.156 Sum_probs=70.4
Q ss_pred chhhhhcC----CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEEEe-------cCc------eEEEeccccEE
Q 013239 155 TLRHAVIQ----DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVHIA-------NGA------CITIQFITNVI 214 (447)
Q Consensus 155 tLR~Av~q----~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~I~-------~G~------gi~i~~a~NVI 214 (447)
|+.+||.. +..++|||=+.|+-+ +.+.| .+|+||.|.|...+|. +|. .+.+ .+++++
T Consensus 244 TIq~Ai~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 320 (541)
T PLN02416 244 TITDAINFAPNNSNDRIIIYVREGVYE--ENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLAV-SGEGFL 320 (541)
T ss_pred CHHHHHHhhhhcCCceEEEEEeCceeE--EEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEEE-ECCCeE
Confidence 67778854 345777777777654 55656 5789999999765443 121 1333 589999
Q ss_pred EEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEeecCceEEEEeeEeecCCCCeEEeeeCCceEEEEcceec
Q 013239 215 IHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFT 289 (447)
Q Consensus 215 IRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~~~DGliDi~~gS~~ITISnn~f~ 289 (447)
.+||.|++-... .....-|+.+ .+..+-+-+|.|.-..|=|.+- +..--..+|++.
T Consensus 321 a~nitf~Ntag~---------------~~~QAVAl~v-~~D~~~fy~c~~~G~QDTLy~~---~~Rqyy~~C~I~ 376 (541)
T PLN02416 321 ARDITIENTAGP---------------EKHQAVALRV-NADLVALYRCTINGYQDTLYVH---SFRQFYRECDIY 376 (541)
T ss_pred EEeeEEEECCCC---------------CCCceEEEEE-cCccEEEEcceEecccchhccC---CCceEEEeeEEe
Confidence 999999985310 0113334444 4678888999988766655432 233344455554
No 37
>PLN02176 putative pectinesterase
Probab=94.34 E-value=0.7 Score=48.17 Aligned_cols=120 Identities=14% Similarity=0.227 Sum_probs=74.5
Q ss_pred chhhhhcC----CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEEEe---cCc------eEEEeccccEEEEce
Q 013239 155 TLRHAVIQ----DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVHIA---NGA------CITIQFITNVIIHGI 218 (447)
Q Consensus 155 tLR~Av~q----~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~I~---~G~------gi~i~~a~NVIIRnL 218 (447)
|+.+||.. +..+++||-+.|+-+ +.+.| .+|+||.|.|...+|. ++. .+.+ .+++++.+||
T Consensus 53 TIq~AIdavP~~~~~~~~I~Ik~GvY~--EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~a~~F~a~nl 129 (340)
T PLN02176 53 TVQSAIDSIPLQNQNWIRILIQNGIYR--EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-YASNIIITGI 129 (340)
T ss_pred CHHHHHhhchhcCCceEEEEECCcEEE--EEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-ECCCEEEEee
Confidence 77888843 233566666667665 55666 5689999998765432 221 2333 6899999999
Q ss_pred EEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecCCCCeEEeeeCCceEEEEcceeccC
Q 013239 219 NIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTHH 291 (447)
Q Consensus 219 ~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~DGliDi~~gS~~ITISnn~f~~H 291 (447)
.|++..+-.+ + .....+-|+-+. .+..+-+.+|.|.-..|=|.+- ...--..+|++..+
T Consensus 130 T~~Nt~~~~~------~-----~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~---~gRqyf~~CyIeG~ 189 (340)
T PLN02176 130 TFKNTYNIAS------N-----SSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDG---KGRHYYKRCVISGG 189 (340)
T ss_pred EEEeCCCccC------C-----CCCCccceEEEEecCccEEEEccEEecccceeEeC---CcCEEEEecEEEec
Confidence 9998643100 0 001233455544 4788999999998877777653 23444556666543
No 38
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=93.67 E-value=0.67 Score=51.19 Aligned_cols=115 Identities=15% Similarity=0.216 Sum_probs=73.0
Q ss_pred chhhhhcC-----CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEEEe--------cCc------eEEEecccc
Q 013239 155 TLRHAVIQ-----DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVHIA--------NGA------CITIQFITN 212 (447)
Q Consensus 155 tLR~Av~q-----~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~I~--------~G~------gi~i~~a~N 212 (447)
|+.+||.. ...+.|||=+.|+-+ +.+.| ..|+||.|.|...+|. +|. .+.+ .+++
T Consensus 255 TIq~Av~a~p~~~~~~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~v-~~~~ 331 (553)
T PLN02708 255 TVQEAVNAAPDNNGDRKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGV-LGDG 331 (553)
T ss_pred CHHHHHHhhhhccCCccEEEEEeCceEE--eeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEEE-EcCC
Confidence 67777743 133567776677654 44555 5789999998765432 221 1222 6899
Q ss_pred EEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecCCC-----------------CeEEe
Q 013239 213 VIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNCAD-----------------GLIDA 274 (447)
Q Consensus 213 VIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~D-----------------GliDi 274 (447)
++.+||+|++-.. ....-|+-+. .+..+-+.+|.|.-..| |.+|+
T Consensus 332 f~a~~it~~Ntag-----------------~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtVDF 394 (553)
T PLN02708 332 FMARDLTIQNTAG-----------------PDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIQGNVDF 394 (553)
T ss_pred eEEEeeEEEcCCC-----------------CCCCceEEEEecCCcEEEEeeeeeeccccceeCCCceEEEeeEEeecCCE
Confidence 9999999997521 0123555555 57889999999986544 55555
Q ss_pred eeCCceEEEEcceec
Q 013239 275 IMGSTAITVSNNYFT 289 (447)
Q Consensus 275 ~~gS~~ITISnn~f~ 289 (447)
+-|.-.+-+++|.|.
T Consensus 395 IFG~a~avfq~c~i~ 409 (553)
T PLN02708 395 IFGNSAAVFQDCAIL 409 (553)
T ss_pred EecCceEEEEccEEE
Confidence 555555556666554
No 39
>PLN02497 probable pectinesterase
Probab=93.60 E-value=1.6 Score=45.32 Aligned_cols=150 Identities=12% Similarity=0.153 Sum_probs=87.5
Q ss_pred cccccCccccccccccccCcccccCccccCCCCeEEEEcCCCCCCCCCCCCc---chhhhhcC----CCCeEEEEeeceE
Q 013239 103 DCWRCDSRWYLRRKRLADCAIGFGRNAIGGRDGRYYVVSDPGDDDAVNPKPG---TLRHAVIQ----DRPLWIVFKRDMV 175 (447)
Q Consensus 103 ~cwr~~~~w~~~r~~lA~~A~GFG~~ttGG~gG~vy~VT~~~D~~~~~~~pG---tLR~Av~q----~~P~~IVF~~~g~ 175 (447)
-|.-|+|.|.......+- .+.++|.- | +.| |+.+||.. ...+++||=+.|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~--------------~~~i~Va~--d------GsGdf~TIq~AIdavP~~~~~~~~I~Ik~G~ 70 (331)
T PLN02497 13 LCCFCLPHLIEAKPFGVY--------------QQQVFVDQ--S------GHGNFTTIQSAIDSVPSNNKHWFCINVKAGL 70 (331)
T ss_pred HHHhhcchhhhcCCcccc--------------ceEEEECC--C------CCCCccCHHHHHhhccccCCceEEEEEeCcE
Confidence 466789999866554321 22334421 1 223 67777743 2334555555565
Q ss_pred EEeCceEEe---cCCcEEEccCceEE-Ee--cCc------eEEEeccccEEEEceEEEeccCCCCcccccCCCCcCCccc
Q 013239 176 ITLKQELIM---NSFKTIDGRGVNVH-IA--NGA------CITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTM 243 (447)
Q Consensus 176 I~L~~~L~I---~SnkTI~G~gA~~~-I~--~G~------gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~ 243 (447)
- ++.+.| .+++||.|+|...+ |. ++. .+.+ .++|++.+||.|++..+... .+. ..
T Consensus 71 Y--~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v-~a~~f~a~nlT~~Nt~~~~~---------~~~-~~ 137 (331)
T PLN02497 71 Y--REKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFST-LADNTVVKSITFANSYNFPS---------KGN-KN 137 (331)
T ss_pred E--EEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEE-ecCCeEEEccEEEeCCCCcc---------ccC-CC
Confidence 4 355556 57999999987643 32 111 2222 68999999999998642100 000 01
Q ss_pred CCCCeEEee-cCceEEEEeeEeecCCCCeEEeeeCCceEEEEcceecc
Q 013239 244 ADGDAISIF-GSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTH 290 (447)
Q Consensus 244 ~d~DaIsI~-gs~nVWIDHcS~S~~~DGliDi~~gS~~ITISnn~f~~ 290 (447)
.+.-|+-+. .+..+-+.+|.|.-..|=|.+- ...--..+|++..
T Consensus 138 ~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~IeG 182 (331)
T PLN02497 138 PRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDS---DGRHYFKRCTIQG 182 (331)
T ss_pred CCcceEEEEecCCcEEEEeeEEeccccceeeC---CCcEEEEeCEEEe
Confidence 123455554 5788999999999888888753 2344556666654
No 40
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=93.49 E-value=0.64 Score=51.18 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=69.6
Q ss_pred chhhhhcC----CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEEE-e------cCce-----EEEeccccEEE
Q 013239 155 TLRHAVIQ----DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVHI-A------NGAC-----ITIQFITNVII 215 (447)
Q Consensus 155 tLR~Av~q----~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~I-~------~G~g-----i~i~~a~NVII 215 (447)
|+.+||.. +..++|||=+.|+-+ +.+.| .+|+||.|.|...+| . +|.+ -..-.+++++.
T Consensus 246 TIq~Av~a~p~~~~~r~vI~Vk~GvY~--E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v~~~~F~a 323 (537)
T PLN02506 246 TITEAINEAPNHSNRRYIIYVKKGVYK--ENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAVSGRGFIA 323 (537)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCeee--EEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEEEcCCeEE
Confidence 67777754 334667776677653 44555 578999999876543 2 1211 01226899999
Q ss_pred EceEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecCCCCeEEeeeCCceEEEEcceecc
Q 013239 216 HGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTH 290 (447)
Q Consensus 216 RnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~DGliDi~~gS~~ITISnn~f~~ 290 (447)
+||.|++-.. . .+.-|+-+. .+.++-+.+|.|.-..|=|.+- +..--..+|++..
T Consensus 324 ~nit~~Ntag--------------~---~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~---~~rqyy~~C~I~G 379 (537)
T PLN02506 324 RDITFRNTAG--------------P---QNHQAVALRVDSDQSAFYRCSMEGYQDTLYAH---SLRQFYRECEIYG 379 (537)
T ss_pred EeeEEEeCCC--------------C---CCCceEEEEecCCcEEEEcceeecccccceec---CCceEEEeeEEec
Confidence 9999998531 0 122344443 4788999999998776666542 2233444555543
No 41
>PLN02432 putative pectinesterase
Probab=93.48 E-value=0.92 Score=46.37 Aligned_cols=121 Identities=13% Similarity=0.302 Sum_probs=74.4
Q ss_pred chhhhhcC----CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEEEe---cCc------eEEEeccccEEEEce
Q 013239 155 TLRHAVIQ----DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVHIA---NGA------CITIQFITNVIIHGI 218 (447)
Q Consensus 155 tLR~Av~q----~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~I~---~G~------gi~i~~a~NVIIRnL 218 (447)
|+.+||.. +..+++||=+.|+- .+.|.| .+|+||.|.+...+|. ++. .+.+ .++|++.+||
T Consensus 25 TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a~nl 101 (293)
T PLN02432 25 KIQDAIDAVPSNNSQLVFIWVKPGIY--REKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVGRFL 101 (293)
T ss_pred CHHHHHhhccccCCceEEEEEeCcee--EEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEEEee
Confidence 56677743 22345555555654 355556 6789999998664432 121 2223 6899999999
Q ss_pred EEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecCCCCeEEeeeCCceEEEEcceeccCCeeeEe
Q 013239 219 NIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLL 297 (447)
Q Consensus 219 ~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~DGliDi~~gS~~ITISnn~f~~H~k~mLi 297 (447)
.|++..+ ..+-|+-+. .+..+-+.+|.|.-..|=|++- ...--+.+|++..+=. +++
T Consensus 102 t~~Nt~g------------------~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~---~gr~yf~~c~I~G~VD-FIF 159 (293)
T PLN02432 102 TIQNTFG------------------SSGKAVALRVAGDRAAFYGCRILSYQDTLLDD---TGRHYYRNCYIEGATD-FIC 159 (293)
T ss_pred EEEeCCC------------------CCCceEEEEEcCCcEEEEcceEecccceeEEC---CCCEEEEeCEEEeccc-EEe
Confidence 9998532 122344444 5788999999999888887652 2344556666664411 245
Q ss_pred cCC
Q 013239 298 GHS 300 (447)
Q Consensus 298 G~s 300 (447)
|..
T Consensus 160 G~g 162 (293)
T PLN02432 160 GNA 162 (293)
T ss_pred cCc
Confidence 543
No 42
>PLN02682 pectinesterase family protein
Probab=93.46 E-value=1.3 Score=46.71 Aligned_cols=119 Identities=15% Similarity=0.233 Sum_probs=71.9
Q ss_pred chhhhhcC----CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEE-Ee----------cC--------ceEEEe
Q 013239 155 TLRHAVIQ----DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVH-IA----------NG--------ACITIQ 208 (447)
Q Consensus 155 tLR~Av~q----~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~-I~----------~G--------~gi~i~ 208 (447)
|+.+||.. +..+++||=+.|+- ++.+.| .+|+||.|.|...+ |. +| ..+.+
T Consensus 84 TIQ~AIdavP~~~~~r~vI~Ik~G~Y--~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v- 160 (369)
T PLN02682 84 TIQAAIDSLPVINLVRVVIKVNAGTY--REKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAV- 160 (369)
T ss_pred CHHHHHhhccccCCceEEEEEeCcee--eEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEE-
Confidence 56677743 22345555455654 355666 57899999987644 32 11 11222
Q ss_pred ccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecCCCCeEEeeeCCceEEEEcce
Q 013239 209 FITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNY 287 (447)
Q Consensus 209 ~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~DGliDi~~gS~~ITISnn~ 287 (447)
.+++++.+||.|++..+.+ .+ | ..+.-|+-+. .+.++-+.+|.|.-..|=|.+- ...--+.+|+
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~------~~---g---~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~ 225 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVP------PP---G---ALGKQAVALRISADTAAFYGCKFLGAQDTLYDH---LGRHYFKDCY 225 (369)
T ss_pred ECCCeEEEeeEEEcccccC------CC---C---CCcccEEEEEecCCcEEEEcceEeccccceEEC---CCCEEEEeeE
Confidence 6899999999999864311 00 1 1223455444 5789999999999887777653 2344555666
Q ss_pred eccC
Q 013239 288 FTHH 291 (447)
Q Consensus 288 f~~H 291 (447)
+..+
T Consensus 226 IeG~ 229 (369)
T PLN02682 226 IEGS 229 (369)
T ss_pred Eccc
Confidence 6543
No 43
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=93.42 E-value=0.77 Score=50.44 Aligned_cols=100 Identities=14% Similarity=0.186 Sum_probs=64.1
Q ss_pred chhhhhcC-----CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEEE-e------cCce-----EEEeccccEE
Q 013239 155 TLRHAVIQ-----DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVHI-A------NGAC-----ITIQFITNVI 214 (447)
Q Consensus 155 tLR~Av~q-----~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~I-~------~G~g-----i~i~~a~NVI 214 (447)
|+.+||.. ...+++||=+.|+-+ +.+.| .+|+||.|.|...+| . +|.+ -....++|++
T Consensus 239 TIq~AI~a~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv~v~~~~F~ 316 (529)
T PLN02170 239 TIGEALLSTSLESGGGRTVIYLKAGTYH--ENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATVAAMGDGFI 316 (529)
T ss_pred hHHHHHHhcccccCCceEEEEEeCCeeE--EEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEEEEEcCCeE
Confidence 67888853 224677776777754 55556 579999999876544 2 1211 1122689999
Q ss_pred EEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecCCCCeEE
Q 013239 215 IHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNCADGLID 273 (447)
Q Consensus 215 IRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~DGliD 273 (447)
.+||.|++-... ...-|+-+. .+..+.+.+|.|.-..|=|.+
T Consensus 317 a~nitf~Ntag~-----------------~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~ 359 (529)
T PLN02170 317 ARDITFVNSAGP-----------------NSEQAVALRVGSDKSVVYRCSVEGYQDSLYT 359 (529)
T ss_pred EEeeEEEecCCC-----------------CCCceEEEEecCCcEEEEeeeEeccCCccee
Confidence 999999985310 122344443 467788899999876665544
No 44
>PLN02304 probable pectinesterase
Probab=93.36 E-value=1.5 Score=46.48 Aligned_cols=127 Identities=17% Similarity=0.270 Sum_probs=79.2
Q ss_pred chhhhhcC----CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEEE-e--cC----------ceEEEeccccEE
Q 013239 155 TLRHAVIQ----DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVHI-A--NG----------ACITIQFITNVI 214 (447)
Q Consensus 155 tLR~Av~q----~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~I-~--~G----------~gi~i~~a~NVI 214 (447)
|+.+||.. +..+++||=+.|+-+ +.|.| .+|+||.|+|...+| . +. ..+. ..++|++
T Consensus 89 TIQ~AIdavP~~~~~r~vI~Ik~GvY~--EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~-v~a~~F~ 165 (379)
T PLN02304 89 TVQSAVDAVGNFSQKRNVIWINSGIYY--EKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQ-VFASNFI 165 (379)
T ss_pred CHHHHHhhCcccCCCcEEEEEeCeEeE--EEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEE-EECCCeE
Confidence 67788844 223566665566543 56666 579999999876543 2 11 1122 2589999
Q ss_pred EEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecCCCCeEEeeeCCceEEEEcceeccCCe
Q 013239 215 IHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTHHNE 293 (447)
Q Consensus 215 IRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~DGliDi~~gS~~ITISnn~f~~H~k 293 (447)
.+||.|++..+.+ .+ | ..+.-|+-+. .+..+-+.+|.|.-..|=|.+- ...--+.+|++..+=.
T Consensus 166 a~nITf~Nta~~~------~~---g---~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~---~gR~Yf~~CyIeG~VD 230 (379)
T PLN02304 166 AKNISFMNVAPIP------KP---G---DVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDD---RGRHYFKDCYIQGSID 230 (379)
T ss_pred EEeeEEEecCCCC------CC---C---CCCccEEEEEecCCcEEEEeceEecccceeEeC---CCCEEEEeeEEccccc
Confidence 9999999864321 00 1 1233455554 5789999999999988888763 2345566777765421
Q ss_pred eeEecCC
Q 013239 294 VMLLGHS 300 (447)
Q Consensus 294 ~mLiG~s 300 (447)
.++|..
T Consensus 231 -FIFG~g 236 (379)
T PLN02304 231 -FIFGDA 236 (379)
T ss_pred -EEeccc
Confidence 245543
No 45
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=93.29 E-value=2.1 Score=47.22 Aligned_cols=115 Identities=14% Similarity=0.222 Sum_probs=76.2
Q ss_pred chhhhhcC---CC----CeEEEEeeceEEEeCceEEe---cCCcEEEccCceEEEe-------cCc------eEEEeccc
Q 013239 155 TLRHAVIQ---DR----PLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVHIA-------NGA------CITIQFIT 211 (447)
Q Consensus 155 tLR~Av~q---~~----P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~I~-------~G~------gi~i~~a~ 211 (447)
|+.+||.. .. -++|||=+.|+-+ +.+.| .+|+||.|.|...+|. +|. .+.+ .++
T Consensus 237 TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v-~~~ 313 (538)
T PLN03043 237 TITDAIAAAPNNSKPEDGYFVIYAREGYYE--EYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAV-SGE 313 (538)
T ss_pred CHHHHHHhccccCCCCcceEEEEEcCeeeE--EEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEE-ECC
Confidence 67778753 11 2677777777754 45555 5799999998765432 231 1222 689
Q ss_pred cEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecCC-----------------CCeEE
Q 013239 212 NVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNCA-----------------DGLID 273 (447)
Q Consensus 212 NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~-----------------DGliD 273 (447)
++|.+||.|++-.. . ...-|+-+. .+...-+.+|+|.-.. .|.+|
T Consensus 314 ~F~a~~it~~Ntag--------------~---~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVD 376 (538)
T PLN03043 314 RFVAVDVTFRNTAG--------------P---EKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVD 376 (538)
T ss_pred CEEEEeeEEEECCC--------------C---CCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccc
Confidence 99999999998531 0 123455554 5677888899887643 56667
Q ss_pred eeeCCceEEEEcceec
Q 013239 274 AIMGSTAITVSNNYFT 289 (447)
Q Consensus 274 i~~gS~~ITISnn~f~ 289 (447)
++-|.-.+-+++|.|.
T Consensus 377 FIFG~a~avfq~c~i~ 392 (538)
T PLN03043 377 FIFGNAAAIFQNCNLY 392 (538)
T ss_pred eEeecceeeeeccEEE
Confidence 7777777777888775
No 46
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=93.00 E-value=2 Score=47.84 Aligned_cols=115 Identities=15% Similarity=0.206 Sum_probs=76.0
Q ss_pred chhhhhcC----CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEEEe-------cCc------eEEEeccccEE
Q 013239 155 TLRHAVIQ----DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVHIA-------NGA------CITIQFITNVI 214 (447)
Q Consensus 155 tLR~Av~q----~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~I~-------~G~------gi~i~~a~NVI 214 (447)
|+.+||.. ...++|||=+.|+-+ +.+.| .+|+||.|.|...+|. +|. .+. -.+++++
T Consensus 289 TI~~Av~a~p~~~~~r~vI~ik~GvY~--E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~-v~~~~F~ 365 (587)
T PLN02313 289 TVAAAVAAAPEKSNKRFVIHIKAGVYR--ENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVA-AVGERFL 365 (587)
T ss_pred cHHHHHHhccccCCceEEEEEeCceeE--EEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEE-EECCCeE
Confidence 67777754 234666666667543 45556 4689999998765443 221 112 2589999
Q ss_pred EEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecC-----------------CCCeEEeee
Q 013239 215 IHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNC-----------------ADGLIDAIM 276 (447)
Q Consensus 215 IRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~-----------------~DGliDi~~ 276 (447)
.+||.|++-.. . ...-|+-+. ++...-+-+|+|.-. ..|.+|++-
T Consensus 366 a~~itf~Ntag--------------~---~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIF 428 (587)
T PLN02313 366 ARDITFQNTAG--------------P---SKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIF 428 (587)
T ss_pred EEeeEEEeCCC--------------C---CCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceec
Confidence 99999998531 0 122444444 578888999988753 367777777
Q ss_pred CCceEEEEcceec
Q 013239 277 GSTAITVSNNYFT 289 (447)
Q Consensus 277 gS~~ITISnn~f~ 289 (447)
|.-.+-+++|.|.
T Consensus 429 G~a~avfq~c~i~ 441 (587)
T PLN02313 429 GNAAAVLQDCDIN 441 (587)
T ss_pred cceeEEEEccEEE
Confidence 8888888888886
No 47
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=92.89 E-value=1.1 Score=49.06 Aligned_cols=100 Identities=14% Similarity=0.194 Sum_probs=63.6
Q ss_pred chhhhhcC----CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEEEe-------cCce----EE-EeccccEEE
Q 013239 155 TLRHAVIQ----DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVHIA-------NGAC----IT-IQFITNVII 215 (447)
Q Consensus 155 tLR~Av~q----~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~I~-------~G~g----i~-i~~a~NVII 215 (447)
|+.+||.. +..+++||=+.|+-+ +.+.| .+|+||.|.|...+|. +|.+ =+ .-.+++++.
T Consensus 220 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v~~~~F~a 297 (520)
T PLN02201 220 TIMDAVLAAPDYSTKRYVIYIKKGVYL--ENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFAVSGRGFIA 297 (520)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCceeE--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEEEECCCeEE
Confidence 67778744 223566666667654 55666 4689999998765432 2221 01 126899999
Q ss_pred EceEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecCCCCeEE
Q 013239 216 HGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNCADGLID 273 (447)
Q Consensus 216 RnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~DGliD 273 (447)
+||.|++-.+. ...-|+-+. .+...-+.+|.|.-..|=|.+
T Consensus 298 ~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~ 339 (520)
T PLN02201 298 RDITFQNTAGP-----------------EKHQAVALRSDSDLSVFYRCAMRGYQDTLYT 339 (520)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeeeeccCCeeEe
Confidence 99999985310 123445444 467889999999877666654
No 48
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=92.79 E-value=0.96 Score=48.43 Aligned_cols=115 Identities=22% Similarity=0.254 Sum_probs=55.5
Q ss_pred CCCeEEeec------CceEEEEeeEeecC--CCCeEEeeeCCceEEEEcceeccCCeeeEecCCCCccCCccceEEEEee
Q 013239 245 DGDAISIFG------SSHIWIDHNSLSNC--ADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYN 316 (447)
Q Consensus 245 d~DaIsI~g------s~nVWIDHcS~S~~--~DGliDi~~gS~~ITISnn~f~~H~k~mLiG~sD~~~~d~~~~VTihhN 316 (447)
++.+|.|-. .++.-|.|+-|..| .-|.|++| |..-||.+|-|.+..-.+-+=|.. .-|+..|
T Consensus 183 ggEtIRiG~S~~S~~~s~t~Ve~NlFe~cdGE~EIISvK--S~~N~ir~Ntf~es~G~ltlRHGn--------~n~V~gN 252 (425)
T PF14592_consen 183 GGETIRIGTSHSSMSDSNTTVENNLFERCDGEVEIISVK--SSDNTIRNNTFRESQGSLTLRHGN--------RNTVEGN 252 (425)
T ss_dssp ---SEEE-SSTT-B-----EEES-EEEEE-SSSEEEEEE--SBT-EEES-EEES-SSEEEEEE-S--------S-EEES-
T ss_pred CceeEEEecccccccccceeeecchhhhcCCceeEEEee--cCCceEeccEEEeccceEEEecCC--------CceEecc
Confidence 456666632 35677777777765 34456653 556778888888766554444432 5688999
Q ss_pred EecCCCcC--CCceecc-CeEE-EEcceeeCcee----------eeeecCC------CceEEEeccEEeCCCCc
Q 013239 317 HFGEGLIQ--RMPRCRH-GYFH-VVNNDYTHWVM----------YAIGGSA------NPTINSQGNRYLAPENT 370 (447)
Q Consensus 317 ~F~~~~~q--R~Pr~R~-G~~H-vvNN~y~nw~~----------Yaigg~~------~~~I~segN~F~a~~~~ 370 (447)
+|- +... ..+-+|. |.-| |+|||+++-.. +++-.+. -..+.+++|-|++...+
T Consensus 253 ~Fi-Gng~~~~tGGIRIi~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~~~ 325 (425)
T PF14592_consen 253 VFI-GNGVKEGTGGIRIIGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCKSP 325 (425)
T ss_dssp EEE-E-SSSS-B--EEE-SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-SEE
T ss_pred EEe-cCCCcCCCCceEEecCCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccCCc
Confidence 994 3333 3567774 7666 77999987432 2222111 11477889999887643
No 49
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=92.73 E-value=1.2 Score=48.71 Aligned_cols=100 Identities=18% Similarity=0.211 Sum_probs=63.9
Q ss_pred chhhhhcC----CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEEEe-------cCce----EEE-eccccEEE
Q 013239 155 TLRHAVIQ----DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVHIA-------NGAC----ITI-QFITNVII 215 (447)
Q Consensus 155 tLR~Av~q----~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~I~-------~G~g----i~i-~~a~NVII 215 (447)
|+.+||.. +..+++||=+.|+-+ +.+.| .+|+||.|.|...+|. +|.. -++ -.++++|.
T Consensus 211 TIq~AI~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~v~g~gF~A 288 (509)
T PLN02488 211 TVNAAIAAAPEHSRKRFVIYIKTGVYD--EIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVASNGDGFIG 288 (509)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCeeE--EEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEEEEcCCeEE
Confidence 67778744 233566665666543 55666 5789999999865443 1211 011 26899999
Q ss_pred EceEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecCCCCeEE
Q 013239 216 HGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNCADGLID 273 (447)
Q Consensus 216 RnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~DGliD 273 (447)
+||.|++-.. ...+-|+-+. .+...-+.+|+|.-..|=|.+
T Consensus 289 ~nitf~Ntag-----------------~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~ 330 (509)
T PLN02488 289 IDMCFRNTAG-----------------PAKGPAVALRVSGDMSVIYRCRIEGYQDALYP 330 (509)
T ss_pred EeeEEEECCC-----------------CCCCceEEEEecCCcEEEEcceeeccCcceee
Confidence 9999998531 0124566555 578899999999876655543
No 50
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=92.69 E-value=1.4 Score=48.65 Aligned_cols=113 Identities=17% Similarity=0.184 Sum_probs=71.0
Q ss_pred chhhhhcC-C-----CCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEE-Eec------Cce------EEEecccc
Q 013239 155 TLRHAVIQ-D-----RPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVH-IAN------GAC------ITIQFITN 212 (447)
Q Consensus 155 tLR~Av~q-~-----~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~-I~~------G~g------i~i~~a~N 212 (447)
|+.+||.. + ..+++||=+.|+-+ +.+.| .+|+|+.|.|...+ |.. |.+ +. -.+++
T Consensus 237 TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT~~-v~~~~ 313 (539)
T PLN02995 237 TVQAAIDVAGRRKVTSGRFVIYVKRGIYQ--ENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAG-IEGLH 313 (539)
T ss_pred CHHHHHHhcccccCCCceEEEEEeCCEeE--EEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEEEE-EECCC
Confidence 78888853 1 23566665666654 44555 57999999987654 321 111 12 26899
Q ss_pred EEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecCCCCeEEeeeCCceEEEEcceecc
Q 013239 213 VIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTH 290 (447)
Q Consensus 213 VIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~DGliDi~~gS~~ITISnn~f~~ 290 (447)
++.+||.|++... . ..+-|+-+. .+....+.+|.|.-..|=|.+- +..--..+|++..
T Consensus 314 F~a~nitf~Ntag--------------~---~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~---~~Rqyy~~C~I~G 372 (539)
T PLN02995 314 FIAKGITFRNTAG--------------P---AKGQAVALRSSSDLSIFYKCSIEGYQDTLMVH---SQRQFYRECYIYG 372 (539)
T ss_pred eEEEeeEEEeCCC--------------C---CCCceEEEEEcCCceeEEcceEecccchhccC---CCceEEEeeEEee
Confidence 9999999998531 1 123555555 5788999999999877766543 2233445555543
No 51
>PLN02773 pectinesterase
Probab=92.60 E-value=1.6 Score=45.16 Aligned_cols=113 Identities=16% Similarity=0.195 Sum_probs=67.4
Q ss_pred chhhhhcC----CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEE-Ee-c---------------C------ce
Q 013239 155 TLRHAVIQ----DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVH-IA-N---------------G------AC 204 (447)
Q Consensus 155 tLR~Av~q----~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~-I~-~---------------G------~g 204 (447)
|+.+||.. +..+++||=+.|+-+ +.|.| .+|+||.|++...+ |. + | ..
T Consensus 19 TIq~Aida~P~~~~~~~~I~Ik~G~Y~--E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~SaT 96 (317)
T PLN02773 19 TVQDAIDAVPLCNRCRTVIRVAPGVYR--QPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGT 96 (317)
T ss_pred CHHHHHhhchhcCCceEEEEEeCceEE--EEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCceE
Confidence 67777743 223455555566543 55666 45799999876543 32 1 1 11
Q ss_pred EEEeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecCCCCeEEeeeCCceEEE
Q 013239 205 ITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNCADGLIDAIMGSTAITV 283 (447)
Q Consensus 205 i~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~DGliDi~~gS~~ITI 283 (447)
+.+ .++|++.+||+|++..+. ..+-|+-+. .+..+-+.+|.|.-..|=|.+- ...--+
T Consensus 97 v~v-~a~~f~a~nlT~~Nt~~~-----------------~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~---~gr~yf 155 (317)
T PLN02773 97 VIV-EGEDFIAENITFENSAPE-----------------GSGQAVAIRVTADRCAFYNCRFLGWQDTLYLH---YGKQYL 155 (317)
T ss_pred EEE-ECCCeEEEeeEEEeCCCC-----------------CCCcEEEEEecCccEEEEccEeecccceeEeC---CCCEEE
Confidence 222 689999999999985321 123344443 4688889999988776666542 123444
Q ss_pred Ecceecc
Q 013239 284 SNNYFTH 290 (447)
Q Consensus 284 Snn~f~~ 290 (447)
.+|++..
T Consensus 156 ~~c~IeG 162 (317)
T PLN02773 156 RDCYIEG 162 (317)
T ss_pred EeeEEee
Confidence 4555553
No 52
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=92.50 E-value=3 Score=39.96 Aligned_cols=117 Identities=21% Similarity=0.219 Sum_probs=69.6
Q ss_pred cCceEEEeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCe-EEee-cCceEEEEeeEeecCCCCeEE-----
Q 013239 201 NGACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDA-ISIF-GSSHIWIDHNSLSNCADGLID----- 273 (447)
Q Consensus 201 ~G~gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~Da-IsI~-gs~nVWIDHcS~S~~~DGliD----- 273 (447)
++-+|.+.+++||+|.|..|....... .....|+ |.+. ++++|=|-+|-|.......+-
T Consensus 74 ~~Dai~i~~~~nVWIDH~sfs~~~~~~--------------~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~ 139 (200)
T PF00544_consen 74 DGDAISIDNSSNVWIDHCSFSWGNFEC--------------NSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDS 139 (200)
T ss_dssp S--SEEEESTEEEEEES-EEEETTS-G--------------GGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTT
T ss_pred CCCeEEEEecccEEEeccEEecccccc--------------ccccCCceEEEEeCCceEEEEchhccccccccccCCCCC
Confidence 455788889999999999999863211 0112344 5554 578888888888764333221
Q ss_pred -eeeCCceEEEEcceeccCCeee-EecCCCCccCCccceEEEEeeEecCCCcCCCceecc-CeEEEEccee
Q 013239 274 -AIMGSTAITVSNNYFTHHNEVM-LLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRH-GYFHVVNNDY 341 (447)
Q Consensus 274 -i~~gS~~ITISnn~f~~H~k~m-LiG~sD~~~~d~~~~VTihhN~F~~~~~qR~Pr~R~-G~~HvvNN~y 341 (447)
.......||+-+|+|.+...=+ ++ +.-++-+..|+| .+..+..=.+|. +++-+-||||
T Consensus 140 ~~~~~~~~vT~hhN~f~~~~~R~P~~---------r~G~~Hv~NN~~-~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 140 NSTDRGLRVTFHHNYFANTNSRNPRV---------RFGYVHVYNNYY-YNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp CGGGTTEEEEEES-EEEEEEE-TTEE---------CSCEEEEES-EE-EEECSESEEEETTEEEEEES-EE
T ss_pred ccccCCceEEEEeEEECchhhCCCcc---------cccEEEEEEeee-ECCCCEEEEccCCeEEEEECcCC
Confidence 1122369999999997642111 22 122788999999 456666666665 5788889886
No 53
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=92.38 E-value=1.2 Score=49.29 Aligned_cols=100 Identities=14% Similarity=0.242 Sum_probs=64.1
Q ss_pred chhhhhcC----CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEEEe-------cCce----EE-EeccccEEE
Q 013239 155 TLRHAVIQ----DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVHIA-------NGAC----IT-IQFITNVII 215 (447)
Q Consensus 155 tLR~Av~q----~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~I~-------~G~g----i~-i~~a~NVII 215 (447)
|+.+||.. ...++|||=+.|+-+ +.+.| .+|+||.|.|...+|. +|.+ -+ .-.+++++.
T Consensus 250 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v~~~~F~a 327 (548)
T PLN02301 250 TVKEAVASAPDNSKTRYVIYVKKGTYK--ENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVAAVGDGFIA 327 (548)
T ss_pred cHHHHHHhhhhcCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEEEECCceEE
Confidence 67778754 334677776777743 55666 4799999998765442 2221 01 126899999
Q ss_pred EceEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecCCCCeEE
Q 013239 216 HGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNCADGLID 273 (447)
Q Consensus 216 RnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~DGliD 273 (447)
+||.|++-.. . ...-|+-+. .+..+-+.+|.|.-..|=|.+
T Consensus 328 ~nitf~Ntag--------------~---~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~ 369 (548)
T PLN02301 328 QDIWFQNTAG--------------P---EKHQAVALRVSADQAVINRCRIDAYQDTLYA 369 (548)
T ss_pred EeeEEEECCC--------------C---CCCceEEEEecCCcEEEEeeeeeecccccee
Confidence 9999998531 0 122444443 468889999999876665543
No 54
>PLN02314 pectinesterase
Probab=92.31 E-value=1.2 Score=49.64 Aligned_cols=98 Identities=16% Similarity=0.246 Sum_probs=63.0
Q ss_pred chhhhhcC----CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEEEe-------cCc------eEEEeccccEE
Q 013239 155 TLRHAVIQ----DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVHIA-------NGA------CITIQFITNVI 214 (447)
Q Consensus 155 tLR~Av~q----~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~I~-------~G~------gi~i~~a~NVI 214 (447)
|+.+||.. +..++|||=+.|+-+ +.+.| ..|+|+.|.|..-+|. +|. .+. -.+++++
T Consensus 292 TI~~Av~a~p~~~~~r~vI~ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~-v~~~~F~ 368 (586)
T PLN02314 292 TINEAVASIPKKSKSRFVIYVKEGTYV--ENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFA-AAGKGFI 368 (586)
T ss_pred CHHHHHhhccccCCceEEEEEcCceEE--EEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEE-EEcCCeE
Confidence 67778754 234666666667644 44555 4689999998765442 121 112 2689999
Q ss_pred EEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecCCCCeE
Q 013239 215 IHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNCADGLI 272 (447)
Q Consensus 215 IRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~DGli 272 (447)
.+||.|++... ....-|+-+. ++...-+.+|.|.-..|=|.
T Consensus 369 a~~itf~Ntag-----------------~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy 410 (586)
T PLN02314 369 AKDMGFINTAG-----------------AAKHQAVAFRSGSDMSVFYQCSFDAFQDTLY 410 (586)
T ss_pred EEeeEEEECCC-----------------CCCCceEEEEecCCcEEEEeeEEEeccchhe
Confidence 99999998531 0123455554 67888899999987555443
No 55
>PLN02916 pectinesterase family protein
Probab=92.25 E-value=1.6 Score=47.67 Aligned_cols=100 Identities=15% Similarity=0.137 Sum_probs=63.1
Q ss_pred chhhhhcC-------CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEEEe-------cCce----EE-Eecccc
Q 013239 155 TLRHAVIQ-------DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVHIA-------NGAC----IT-IQFITN 212 (447)
Q Consensus 155 tLR~Av~q-------~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~I~-------~G~g----i~-i~~a~N 212 (447)
|+.+||.. +..+++||=+.|+-+ +.+.| .+|+||.|.|...+|. +|.. =+ .-.+++
T Consensus 201 TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v~~~~ 278 (502)
T PLN02916 201 TINQALAALSRMGKSRTNRVIIYVKAGVYN--EKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGVSGDG 278 (502)
T ss_pred CHHHHHHhcccccCCCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEEECCC
Confidence 67777743 234677776667654 45666 4689999998765432 2211 01 126899
Q ss_pred EEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecCCCCeEE
Q 013239 213 VIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNCADGLID 273 (447)
Q Consensus 213 VIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~DGliD 273 (447)
++.+||.|++-.+. ...-|+-+. .+...-+.+|.|.-..|=|.+
T Consensus 279 F~A~nitf~Ntag~-----------------~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~ 323 (502)
T PLN02916 279 FWARDITFENTAGP-----------------HKHQAVALRVSSDLSVFYRCSFKGYQDTLFV 323 (502)
T ss_pred EEEEeeEEEeCCCC-----------------CCCceEEEEEcCCcEEEEeeeEeccCceeEe
Confidence 99999999985310 122344443 568888999999876665554
No 56
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=92.16 E-value=1.5 Score=48.84 Aligned_cols=113 Identities=12% Similarity=0.149 Sum_probs=69.2
Q ss_pred chhhhhcC----CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEEEe-------cCce------EEEeccccEE
Q 013239 155 TLRHAVIQ----DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVHIA-------NGAC------ITIQFITNVI 214 (447)
Q Consensus 155 tLR~Av~q----~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~I~-------~G~g------i~i~~a~NVI 214 (447)
|+.+||.. ...+++|+=+.|+-+ +.+.| .+|+||.|.|...+|. +|.+ +.+ .+++++
T Consensus 299 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 375 (596)
T PLN02745 299 TISDALAAMPAKYEGRYVIYVKQGIYD--ETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFVA-LGEGFM 375 (596)
T ss_pred cHHHHHHhccccCCceEEEEEeCCeeE--EEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEEE-EcCCEE
Confidence 67778754 223566666666654 44666 4689999999865443 1211 122 689999
Q ss_pred EEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecCCCCeEEeeeCCceEEEEcceecc
Q 013239 215 IHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTH 290 (447)
Q Consensus 215 IRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~DGliDi~~gS~~ITISnn~f~~ 290 (447)
.+||.|++.... ...-|+-+. .+..+-+.+|.|.-..|=|.+- +..--..+|++..
T Consensus 376 a~nitf~Ntag~-----------------~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~---~~Rqyy~~C~I~G 432 (596)
T PLN02745 376 AKSMGFRNTAGP-----------------EKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQ---THRQFYRSCVITG 432 (596)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeEEeecccccccC---CCcEEEEeeEEEe
Confidence 999999985310 123444444 5788999999998776666542 2233444555443
No 57
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=92.11 E-value=1.4 Score=49.04 Aligned_cols=101 Identities=14% Similarity=0.183 Sum_probs=63.5
Q ss_pred chhhhhcC----CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEEEe-cCce----E------E-EeccccEEE
Q 013239 155 TLRHAVIQ----DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVHIA-NGAC----I------T-IQFITNVII 215 (447)
Q Consensus 155 tLR~Av~q----~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~I~-~G~g----i------~-i~~a~NVII 215 (447)
|+.+||.. +..++|||=+.|+-+=+ .+.| .+|+||.|.|...+|. .+.. . + .-.+++++.
T Consensus 286 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~-~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v~~~~F~a 364 (587)
T PLN02484 286 TISEAIKKAPEHSSRRTIIYVKAGRYEEN-NLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAATGAGFIA 364 (587)
T ss_pred cHHHHHHhccccCCCcEEEEEeCCEEEEE-EEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEEEcCCEEE
Confidence 67778754 23467777667775421 3566 5789999998765433 2111 1 1 126899999
Q ss_pred EceEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecCCCCeEE
Q 013239 216 HGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNCADGLID 273 (447)
Q Consensus 216 RnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~DGliD 273 (447)
|||.|++-.+. ...-|+-+. .+...-+.+|.|.-..|=|.+
T Consensus 365 ~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~ 406 (587)
T PLN02484 365 RDMTFENWAGP-----------------AKHQAVALRVGADHAVVYRCNIIGYQDTLYV 406 (587)
T ss_pred EeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeeEeccCccccc
Confidence 99999985310 123455544 578888999988876555543
No 58
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=92.09 E-value=1.8 Score=48.10 Aligned_cols=98 Identities=12% Similarity=0.170 Sum_probs=62.5
Q ss_pred chhhhhcC----CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEE-Ee------cC-c------eEEEeccccE
Q 013239 155 TLRHAVIQ----DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVH-IA------NG-A------CITIQFITNV 213 (447)
Q Consensus 155 tLR~Av~q----~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~-I~------~G-~------gi~i~~a~NV 213 (447)
|+.+||.. +..+++||=+.|+-+ +.+.| .+|+||.|.|..-+ |. +| . .+. -.++++
T Consensus 273 TIq~Av~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~~-v~~~~F 349 (572)
T PLN02990 273 TINEALNAVPKANQKPFVIYIKQGVYN--EKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATVA-INGDHF 349 (572)
T ss_pred CHHHHHhhCcccCCceEEEEEeCceeE--EEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEEE-EEcCCE
Confidence 67778754 223566665666544 45566 47899999987644 32 12 1 011 268999
Q ss_pred EEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecCCCCeE
Q 013239 214 IIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNCADGLI 272 (447)
Q Consensus 214 IIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~DGli 272 (447)
+.+||.|++-.. ....-|+-+. .+...-+.+|.|.-..|=|.
T Consensus 350 ~a~nitf~Ntag-----------------~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy 392 (572)
T PLN02990 350 TAKNIGFENTAG-----------------PEGHQAVALRVSADYAVFYNCQIDGYQDTLY 392 (572)
T ss_pred EEEeeEEEeCCC-----------------CCCCceEEEEEcCCcEEEEeeeEecccchhc
Confidence 999999998531 0233555555 57888999999987555444
No 59
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=92.06 E-value=1.4 Score=49.79 Aligned_cols=144 Identities=14% Similarity=0.161 Sum_probs=89.4
Q ss_pred chhhhhcC----CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEEEe-------cCce------EEEeccccEE
Q 013239 155 TLRHAVIQ----DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVHIA-------NGAC------ITIQFITNVI 214 (447)
Q Consensus 155 tLR~Av~q----~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~I~-------~G~g------i~i~~a~NVI 214 (447)
|+.+||.. ...++|||=+.|+- ++.+.| ..|+||.|.|...+|. +|.+ +.+ .+++++
T Consensus 264 TIq~Av~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~v-~g~~F~ 340 (670)
T PLN02217 264 TINEALNFVPKKKNTTFVVHIKAGIY--KEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVAI-VGDHFI 340 (670)
T ss_pred CHHHHHHhccccCCceEEEEEeCCce--EEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEEE-ECCCeE
Confidence 67778754 23356666556654 345666 3588999998765442 2221 222 689999
Q ss_pred EEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecC-----------------CCCeEEeee
Q 013239 215 IHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNC-----------------ADGLIDAIM 276 (447)
Q Consensus 215 IRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~-----------------~DGliDi~~ 276 (447)
.|||.|++-.. ....-|+-+. .+...-+.+|.|.-. ..|.+|++-
T Consensus 341 a~nitf~Ntag-----------------~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 403 (670)
T PLN02217 341 AKNIGFENTAG-----------------AIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLF 403 (670)
T ss_pred EEeeEEEeCCC-----------------CCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEe
Confidence 99999998531 0223455554 577888888888642 367888888
Q ss_pred CCceEEEEcceeccC-----CeeeEecCCCCccCCccceEEEEeeEec
Q 013239 277 GSTAITVSNNYFTHH-----NEVMLLGHSDSYTRDKVMQVTIAYNHFG 319 (447)
Q Consensus 277 gS~~ITISnn~f~~H-----~k~mLiG~sD~~~~d~~~~VTihhN~F~ 319 (447)
|.-..-+++|.|.-- .+.++--++- ...+...-+.|+++.+.
T Consensus 404 G~a~avfq~C~I~~r~~~~~~~~~ITAqgr-~~~~~~tGfvf~~C~i~ 450 (670)
T PLN02217 404 GDAAAVFQNCTLLVRKPLLNQACPITAHGR-KDPRESTGFVLQGCTIV 450 (670)
T ss_pred cCceEEEEccEEEEccCCCCCceeEecCCC-CCCCCCceEEEEeeEEe
Confidence 888899999998631 1222221111 11223456788888873
No 60
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=91.91 E-value=1.8 Score=47.70 Aligned_cols=99 Identities=17% Similarity=0.204 Sum_probs=63.5
Q ss_pred chhhhhcC----CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEE-Ee------cCc------eEEEeccccEE
Q 013239 155 TLRHAVIQ----DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVH-IA------NGA------CITIQFITNVI 214 (447)
Q Consensus 155 tLR~Av~q----~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~-I~------~G~------gi~i~~a~NVI 214 (447)
|+.+||.. ...+++|+=+.|+-+ +.+.| .+|+||.|.|...+ |. +|. .+. -.+++++
T Consensus 232 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~-v~a~~F~ 308 (530)
T PLN02933 232 TINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVG-VKGKGFI 308 (530)
T ss_pred CHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEE-EECCCEE
Confidence 67778744 223566665666665 44556 56899999987643 32 121 112 2689999
Q ss_pred EEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecCCCCeEE
Q 013239 215 IHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNCADGLID 273 (447)
Q Consensus 215 IRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~DGliD 273 (447)
.+||.|++-.+ . ...-|+-+. .+..+-+.+|.|.-..|=|.+
T Consensus 309 a~nitf~Ntag--------------~---~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~ 351 (530)
T PLN02933 309 AKDISFVNYAG--------------P---AKHQAVALRSGSDHSAFYRCEFDGYQDTLYV 351 (530)
T ss_pred EEeeEEEECCC--------------C---CCCceEEEEEcCCcEEEEEeEEEeccccccc
Confidence 99999998531 0 123455554 578899999999876665554
No 61
>PLN02665 pectinesterase family protein
Probab=91.64 E-value=4.6 Score=42.63 Aligned_cols=119 Identities=16% Similarity=0.163 Sum_probs=73.2
Q ss_pred chhhhhcC----CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEE-Ee-cC----------ceEEEeccccEEE
Q 013239 155 TLRHAVIQ----DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVH-IA-NG----------ACITIQFITNVII 215 (447)
Q Consensus 155 tLR~Av~q----~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~-I~-~G----------~gi~i~~a~NVII 215 (447)
|+.+||.. +..++|||=+.|+-+ +.+.| .+++||.|.+...+ |. ++ ..+. -.+++++.
T Consensus 82 TIq~AIdaiP~~~~~r~vI~Ik~GvY~--EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~-v~a~~F~a 158 (366)
T PLN02665 82 TITDAIKSIPAGNTQRVIIDIGPGEYN--EKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLI-VESDYFMA 158 (366)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcEEE--EEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEE-EECCCeEE
Confidence 67777744 233566766667654 55666 57899999976543 32 11 1122 36899999
Q ss_pred EceEEEeccCCCCcccccCCCCcCCcccCCCCeEEeecCceEEEEeeEeecCCCCeEEeeeCCceEEEEcceecc
Q 013239 216 HGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTH 290 (447)
Q Consensus 216 RnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~~~DGliDi~~gS~~ITISnn~f~~ 290 (447)
+||.|++..|.+.+ .......-|+.+ .+..+-+.+|.|.-..|=|.+- ...--..+|++..
T Consensus 159 ~nitf~Nta~~~~~----------~~~g~QAVAl~v-~gDka~f~~C~f~G~QDTL~~~---~gr~yf~~CyIeG 219 (366)
T PLN02665 159 ANIIIKNSAPRPDG----------KRKGAQAVAMRI-SGDKAAFYNCRFIGFQDTLCDD---KGRHFFKDCYIEG 219 (366)
T ss_pred EeeEEEeCCCCcCC----------CCCCcceEEEEE-cCCcEEEEcceeccccceeEeC---CCCEEEEeeEEee
Confidence 99999986542110 000112344444 4688999999999888887764 2234455666664
No 62
>PLN02634 probable pectinesterase
Probab=91.50 E-value=3.5 Score=43.38 Aligned_cols=119 Identities=16% Similarity=0.250 Sum_probs=70.6
Q ss_pred chhhhhcC----CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEEEe-----------cC--------ceEEEe
Q 013239 155 TLRHAVIQ----DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVHIA-----------NG--------ACITIQ 208 (447)
Q Consensus 155 tLR~Av~q----~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~I~-----------~G--------~gi~i~ 208 (447)
|+.+||.. +..+++||=+.|+- .+.|.| .+|+||.|.|...+|. +| ..+.+
T Consensus 70 TIQaAIda~P~~~~~r~vI~Ik~GvY--~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V- 146 (359)
T PLN02634 70 SVQDAVDSVPKNNTMSVTIKINAGFY--REKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV- 146 (359)
T ss_pred CHHHHHhhCcccCCccEEEEEeCceE--EEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE-
Confidence 45666643 22345555555664 355666 5789999998766542 11 11222
Q ss_pred ccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecCCCCeEEeeeCCceEEEEcce
Q 013239 209 FITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNY 287 (447)
Q Consensus 209 ~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~DGliDi~~gS~~ITISnn~ 287 (447)
.+++++.+||.|++..+.. . .| ..++-|+-+. .+.++-+.+|.|.-..|=|.+- ...--+.+|+
T Consensus 147 ~a~~F~a~niTf~Nta~~~------~---~g---~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~---~gR~yf~~Cy 211 (359)
T PLN02634 147 YANYFTARNISFKNTAPAP------M---PG---MQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDD---AGRHYFKECY 211 (359)
T ss_pred ECCCeEEEeCeEEeCCccC------C---CC---CCCCceEEEEecCCcEEEEEeEEecccceeeeC---CCCEEEEeeE
Confidence 5899999999999864311 0 01 1233444443 4677999999998877777643 2344455666
Q ss_pred eccC
Q 013239 288 FTHH 291 (447)
Q Consensus 288 f~~H 291 (447)
+..+
T Consensus 212 IeG~ 215 (359)
T PLN02634 212 IEGS 215 (359)
T ss_pred Eccc
Confidence 6543
No 63
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=91.47 E-value=1.7 Score=48.17 Aligned_cols=98 Identities=12% Similarity=0.211 Sum_probs=61.7
Q ss_pred chhhhhcC----CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEEEe-------cCc------eEEEeccccEE
Q 013239 155 TLRHAVIQ----DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVHIA-------NGA------CITIQFITNVI 214 (447)
Q Consensus 155 tLR~Av~q----~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~I~-------~G~------gi~i~~a~NVI 214 (447)
|..+||.. +..++|||=+.|+-+ +.+.| ..|+||.|.|..-+|. +|. .+.+ .+++++
T Consensus 272 tI~~Av~a~p~~~~~~~vI~ik~GvY~--E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v-~~~~f~ 348 (565)
T PLN02468 272 TISEALKDVPEKSEKRTIIYVKKGVYF--ENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAV-FGKGFM 348 (565)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCceE--EEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeE-ECCCeE
Confidence 66777744 223556665666654 45556 4578999998765432 121 1122 579999
Q ss_pred EEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecCCCCeE
Q 013239 215 IHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNCADGLI 272 (447)
Q Consensus 215 IRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~DGli 272 (447)
.|||.|++-.. ....-|+-+. .+..+-+.+|.|.-..|=|.
T Consensus 349 a~~itf~Ntag-----------------~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy 390 (565)
T PLN02468 349 ARDMGFRNTAG-----------------PIKHQAVALMSSADLSVFYRCTMDAFQDTLY 390 (565)
T ss_pred EEEEEEEeCCC-----------------CCCCceEEEEEcCCcEEEEEeEEEeccchhc
Confidence 99999998531 0123455544 57889999999987555443
No 64
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=90.88 E-value=2.1 Score=47.44 Aligned_cols=99 Identities=16% Similarity=0.262 Sum_probs=62.6
Q ss_pred chhhhhcC-------CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCceEEEe-------cCc------eEEEeccc
Q 013239 155 TLRHAVIQ-------DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGVNVHIA-------NGA------CITIQFIT 211 (447)
Q Consensus 155 tLR~Av~q-------~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA~~~I~-------~G~------gi~i~~a~ 211 (447)
|+.+||.. ..-+++|+=+.|+-+ +.+.| .+|+||.|.|...+|. +|. .+.+ .++
T Consensus 264 TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SaT~~v-~~~ 340 (566)
T PLN02713 264 TINDAVAAAPNNTDGSNGYFVIYVTAGVYE--EYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAV-VGQ 340 (566)
T ss_pred CHHHHHHhhhcccCCCCceEEEEEcCcEEE--EEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccceeEEE-ECC
Confidence 67777743 122566666667754 45556 5689999998764432 232 1223 679
Q ss_pred cEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecCCCCeEE
Q 013239 212 NVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNCADGLID 273 (447)
Q Consensus 212 NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~DGliD 273 (447)
+++.+||.|++-... ...-|+-+. ++...-+.+|.|.-..|=|.+
T Consensus 341 ~F~a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~ 386 (566)
T PLN02713 341 NFVAVNITFRNTAGP-----------------AKHQAVALRSGADLSTFYSCSFEAYQDTLYT 386 (566)
T ss_pred CeEEEeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEeeeeccCCcceEE
Confidence 999999999985310 123455444 577888889988876655543
No 65
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=89.97 E-value=1.4 Score=48.65 Aligned_cols=130 Identities=21% Similarity=0.210 Sum_probs=85.1
Q ss_pred CCCeEEEEeeceEEEeCc------e---EE-e-cCCcEEEccCceEEEecCc----eEEEeccccEEEEceEEEeccCCC
Q 013239 163 DRPLWIVFKRDMVITLKQ------E---LI-M-NSFKTIDGRGVNVHIANGA----CITIQFITNVIIHGINIHDCKPTG 227 (447)
Q Consensus 163 ~~P~~IVF~~~g~I~L~~------~---L~-I-~SnkTI~G~gA~~~I~~G~----gi~i~~a~NVIIRnL~i~~~~pg~ 227 (447)
..|+.|.|...-.+.+.. + +. + -+++||.+..-+. .+. ||.+..++||.|.+.+|.-
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~---~~~~NtDG~d~~sc~NvlI~~~~fdt----- 307 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDA---NRFDNTDGFDPGSCSNVLIEGCRFDT----- 307 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEEC---CCCCCCCccccccceeEEEeccEEec-----
Confidence 478999998776655531 1 11 1 4555655543221 233 6888899999999999973
Q ss_pred CcccccCCCCcCCcccCCCCeEEee------------cCceEEEEeeEeecCCCCeEEee---eCCceEEEEcceeccCC
Q 013239 228 NAMVRSSPSHYGWRTMADGDAISIF------------GSSHIWIDHNSLSNCADGLIDAI---MGSTAITVSNNYFTHHN 292 (447)
Q Consensus 228 ~~~i~~s~~~~g~r~~~d~DaIsI~------------gs~nVWIDHcS~S~~~DGliDi~---~gS~~ITISnn~f~~H~ 292 (447)
+.|+|.+. -+++|||-||-|+.++-+++.-. .+..+|++-+|.|.+-+
T Consensus 308 -----------------gDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d 370 (542)
T COG5434 308 -----------------GDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTD 370 (542)
T ss_pred -----------------CCceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCc
Confidence 23444433 25789999999999888887743 35689999999999977
Q ss_pred eeeEecCCCCccCCccceEEEEeeEe
Q 013239 293 EVMLLGHSDSYTRDKVMQVTIAYNHF 318 (447)
Q Consensus 293 k~mLiG~sD~~~~d~~~~VTihhN~F 318 (447)
.+.=|...+... ...-+++|+-|.-
T Consensus 371 ~GLRikt~~~~g-G~v~nI~~~~~~~ 395 (542)
T COG5434 371 RGLRIKTNDGRG-GGVRNIVFEDNKM 395 (542)
T ss_pred ceeeeeeecccc-eeEEEEEEecccc
Confidence 776665544322 2234555555544
No 66
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=89.77 E-value=3.3 Score=42.27 Aligned_cols=123 Identities=12% Similarity=0.196 Sum_probs=69.8
Q ss_pred chhhhhcC----CCCeEEEEeeceEEEeCceEEec---CCcEEEccCceEEEecCc-------------eEEEeccccEE
Q 013239 155 TLRHAVIQ----DRPLWIVFKRDMVITLKQELIMN---SFKTIDGRGVNVHIANGA-------------CITIQFITNVI 214 (447)
Q Consensus 155 tLR~Av~q----~~P~~IVF~~~g~I~L~~~L~I~---SnkTI~G~gA~~~I~~G~-------------gi~i~~a~NVI 214 (447)
|+.+||.. ...+++||=..|+-+ +.|.|. +++||.|.|+..+|.-+. .+.+ .++|++
T Consensus 14 TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v-~a~~f~ 90 (298)
T PF01095_consen 14 TIQAAIDAAPDNNTSRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSV-NADDFT 90 (298)
T ss_dssp SHHHHHHHS-SSSSS-EEEEE-SEEEE----EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-E
T ss_pred CHHHHHHhchhcCCceEEEEEeCeeEc--cccEeccccceEEEEecCCCceEEEEeccccccccccccccccc-ccccee
Confidence 57777753 334566776677665 556663 699999998765432121 1223 589999
Q ss_pred EEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEeecCceEEEEeeEeecCCCCeEEeeeCCceEEEEcceeccCCee
Q 013239 215 IHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTHHNEV 294 (447)
Q Consensus 215 IRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~~~DGliDi~~gS~~ITISnn~f~~H~k~ 294 (447)
++||.|++... . .....-||.+ .+.++.+.+|.|.-..|=|..- ....-+.+|++..+-.
T Consensus 91 ~~nit~~Nt~g--------------~-~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~~---~~r~y~~~c~IeG~vD- 150 (298)
T PF01095_consen 91 AENITFENTAG--------------P-SGGQAVALRV-SGDRAAFYNCRFLGYQDTLYAN---GGRQYFKNCYIEGNVD- 150 (298)
T ss_dssp EEEEEEEEHCS--------------G-SG----SEEE-T-TSEEEEEEEEE-STT-EEE----SSEEEEES-EEEESEE-
T ss_pred eeeeEEecCCC--------------C-cccceeeeee-cCCcEEEEEeEEccccceeeec---cceeEEEeeEEEecCc-
Confidence 99999998521 0 1123456666 4588999999999999988653 3456677888875421
Q ss_pred eEecCC
Q 013239 295 MLLGHS 300 (447)
Q Consensus 295 mLiG~s 300 (447)
+++|..
T Consensus 151 FIfG~~ 156 (298)
T PF01095_consen 151 FIFGNG 156 (298)
T ss_dssp EEEESS
T ss_pred EEECCe
Confidence 356654
No 67
>PLN02671 pectinesterase
Probab=89.25 E-value=5.2 Score=42.15 Aligned_cols=119 Identities=14% Similarity=0.181 Sum_probs=70.2
Q ss_pred chhhhhcC----CCCeEEEEeeceEEEeCceEEe---cCCcEEEccCc---eEEEe----------cCc--------eEE
Q 013239 155 TLRHAVIQ----DRPLWIVFKRDMVITLKQELIM---NSFKTIDGRGV---NVHIA----------NGA--------CIT 206 (447)
Q Consensus 155 tLR~Av~q----~~P~~IVF~~~g~I~L~~~L~I---~SnkTI~G~gA---~~~I~----------~G~--------gi~ 206 (447)
|+.+||.. ...+++||=+.|+- .+.|.| .+++||.|.|. +..|. +|. .+.
T Consensus 73 TIQ~AIdavP~~~~~~~~I~Ik~GvY--~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~ 150 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYILPGIY--REKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVT 150 (359)
T ss_pred CHHHHHHhchhcCCccEEEEEeCceE--EEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEE
Confidence 56667643 22245555555654 355666 57899999874 33443 111 122
Q ss_pred EeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEeecCceEEEEeeEeecCCCCeEEeeeCCceEEEEcc
Q 013239 207 IQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNN 286 (447)
Q Consensus 207 i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~~~DGliDi~~gS~~ITISnn 286 (447)
..+++++.+||.|++..+... +- .....-|+.+ .+.++-+.+|.|.-..|=|++- ...--+.+|
T Consensus 151 -v~a~~F~a~nitfeNt~~~~~----------g~-~~~QAVALrv-~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~C 214 (359)
T PLN02671 151 -IESDYFCATGITFENTVVAEP----------GG-QGMQAVALRI-SGDKAFFYKVRVLGAQDTLLDE---TGSHYFYQC 214 (359)
T ss_pred -EECCceEEEeeEEEcCCCCCC----------CC-CCccEEEEEE-cCccEEEEcceEeccccccEeC---CCcEEEEec
Confidence 268999999999998632110 00 0123344444 4688999999999888887753 223455666
Q ss_pred eeccC
Q 013239 287 YFTHH 291 (447)
Q Consensus 287 ~f~~H 291 (447)
++..+
T Consensus 215 yIeG~ 219 (359)
T PLN02671 215 YIQGS 219 (359)
T ss_pred EEEEe
Confidence 66643
No 68
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=88.68 E-value=5.1 Score=38.72 Aligned_cols=88 Identities=23% Similarity=0.247 Sum_probs=59.0
Q ss_pred ceEEEEcceeccCC--eeeEecCCCCccCCccceEEEEeeEecCCCcCCCceecc--C-----e--EEEEcceeeCce--
Q 013239 279 TAITVSNNYFTHHN--EVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRH--G-----Y--FHVVNNDYTHWV-- 345 (447)
Q Consensus 279 ~~ITISnn~f~~H~--k~mLiG~sD~~~~d~~~~VTihhN~F~~~~~qR~Pr~R~--G-----~--~HvvNN~y~nw~-- 345 (447)
++|-|=||.+.+-. -.-|+|...++..+....|.||||.|. ....+|...+ | + .-+.||+|+...
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY--~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~a 79 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFY--DTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHA 79 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEee--cCCcCCCCceeeeEEeccccccEEEeeeecccccc
Confidence 46778888888743 234788877777777779999999995 3555666653 3 1 357899998743
Q ss_pred ----eeeee----cCCCceEEEeccEEeCCC
Q 013239 346 ----MYAIG----GSANPTINSQGNRYLAPE 368 (447)
Q Consensus 346 ----~Yaig----g~~~~~I~segN~F~a~~ 368 (447)
||..+ .+.+-+..+.+|.+.+..
T Consensus 80 ai~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 80 AIAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred eEEEEecccccCCCCCceEEEEEcceEeeee
Confidence 34333 123345667888887654
No 69
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=88.19 E-value=4.1 Score=37.64 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=32.6
Q ss_pred EEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEeecCceEEEEeeEeecCCCCeEEee
Q 013239 213 VIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAI 275 (447)
Q Consensus 213 VIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~~~DGliDi~ 275 (447)
+-|+||.|...... . ....++|.+..+++++|++|++..+..-.+.+.
T Consensus 94 ~~i~nl~i~~~~~~-------------~--~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~ 141 (225)
T PF12708_consen 94 IQIRNLTIDGNGID-------------P--NNNNNGIRFNSSQNVSISNVRIENSGGDGIYFN 141 (225)
T ss_dssp EEEEEEEEEETCGC-------------E---SCEEEEEETTEEEEEEEEEEEES-SS-SEEEE
T ss_pred EEEEeeEEEccccc-------------C--CCCceEEEEEeCCeEEEEeEEEEccCccEEEEE
Confidence 44999999864210 0 012578888889999999999998766555653
No 70
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=87.53 E-value=12 Score=39.57 Aligned_cols=133 Identities=23% Similarity=0.329 Sum_probs=65.5
Q ss_pred ceEEecCCcEEEccCceEEEec--CceEEEeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCce
Q 013239 180 QELIMNSFKTIDGRGVNVHIAN--GACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSH 256 (447)
Q Consensus 180 ~~L~I~SnkTI~G~gA~~~I~~--G~gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~n 256 (447)
..++|+.-+|+-|.--++-=+. |.-+++ .+.++||++|++|+.-. +.| .-+-+|-+. .++-
T Consensus 45 g~~vInr~l~l~ge~ga~l~g~g~G~~vtv-~aP~~~v~Gl~vr~sg~-------~lp--------~m~agI~v~~~at~ 108 (408)
T COG3420 45 GNFVINRALTLRGENGAVLDGGGKGSYVTV-AAPDVIVEGLTVRGSGR-------SLP--------AMDAGIFVGRTATG 108 (408)
T ss_pred ccEEEccceeeccccccEEecCCcccEEEE-eCCCceeeeEEEecCCC-------Ccc--------cccceEEeccCccc
Confidence 3455555566666522211112 223444 58999999999995310 000 112233322 3455
Q ss_pred EEEEeeEeecCCCCeEEeeeCCceEEEEcceec-----------------cCCeeeEecCCCCccCCccceEEEEeeEec
Q 013239 257 IWIDHNSLSNCADGLIDAIMGSTAITVSNNYFT-----------------HHNEVMLLGHSDSYTRDKVMQVTIAYNHFG 319 (447)
Q Consensus 257 VWIDHcS~S~~~DGliDi~~gS~~ITISnn~f~-----------------~H~k~mLiG~sD~~~~d~~~~VTihhN~F~ 319 (447)
--|.||.+..+.-|..= +++..+-|--|.+. +...+.+.|..-++..|...-=|=+||-|
T Consensus 109 A~Vr~N~l~~n~~Gi~l--~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~S~~~~~- 185 (408)
T COG3420 109 AVVRHNDLIGNSFGIYL--HGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDTSQHNVF- 185 (408)
T ss_pred ceEEcccccccceEEEE--eccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEccccccee-
Confidence 55555555544444321 23333333333222 22334455555556666655556677777
Q ss_pred CCCcCCCceeccCe
Q 013239 320 EGLIQRMPRCRHGY 333 (447)
Q Consensus 320 ~~~~qR~Pr~R~G~ 333 (447)
+ ..|+--||||.
T Consensus 186 ~--gnr~~~~Rygv 197 (408)
T COG3420 186 K--GNRFRDLRYGV 197 (408)
T ss_pred c--ccchhheeeeE
Confidence 3 34555677764
No 71
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=81.78 E-value=12 Score=38.87 Aligned_cols=120 Identities=15% Similarity=0.142 Sum_probs=74.3
Q ss_pred CCeEEeecCceEEEEeeEeecCC-----CCeEEeeeCCceEEEEcceeccCCeeeEecCCCCcc--CCccceEEEEeeEe
Q 013239 246 GDAISIFGSSHIWIDHNSLSNCA-----DGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYT--RDKVMQVTIAYNHF 318 (447)
Q Consensus 246 ~DaIsI~gs~nVWIDHcS~S~~~-----DGliDi~~gS~~ITISnn~f~~H~k~mLiG~sD~~~--~d~~~~VTihhN~F 318 (447)
+-++.|..+.||+|-..+|.... +-.|.+..++.+|=|-+|-|..|....---|.|+-. ......|||-+|+|
T Consensus 116 g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~f 195 (345)
T COG3866 116 GGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKF 195 (345)
T ss_pred eceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeee
Confidence 45788888999999999998765 456677788899999999998864431111223321 22356899999999
Q ss_pred cCCCcC--------CCceeccCe--EEEEcceeeCceeeeeecCCCceEEEeccEEeCCC
Q 013239 319 GEGLIQ--------RMPRCRHGY--FHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAPE 368 (447)
Q Consensus 319 ~~~~~q--------R~Pr~R~G~--~HvvNN~y~nw~~Yaigg~~~~~I~segN~F~a~~ 368 (447)
.++-.. -++- -|+ +-+-+|+|.|--..+=--+ -..+.+-+|||..-+
T Consensus 196 hdh~Kssl~G~sD~~~~~--~~~~kvT~hhNyFkn~~qR~PriR-fG~vHvyNNYy~~~~ 252 (345)
T COG3866 196 HDHDKSSLLGSSDSSNYD--DGKYKVTIHHNYFKNLYQRGPRIR-FGMVHVYNNYYEGNP 252 (345)
T ss_pred ecCCeeeeeccCCccccc--CCceeEEEeccccccccccCCceE-eeEEEEeccccccCc
Confidence 432211 1111 233 4456888887422110000 124677899998433
No 72
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=81.72 E-value=34 Score=36.93 Aligned_cols=52 Identities=8% Similarity=0.135 Sum_probs=35.3
Q ss_pred ccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecCCCCeEE
Q 013239 209 FITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNCADGLID 273 (447)
Q Consensus 209 ~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~DGliD 273 (447)
.+++++.+||.|++..+.+. .....-|+-+. .+..+.+.+|.|.-..|=|+.
T Consensus 204 ~ad~F~a~NLTf~Ntag~~~-------------~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~ 256 (422)
T PRK10531 204 QNNGLQLQNLTIENTLGDSV-------------DAGNHPAVALRTDGDKVQIENVNILGRQDTFFV 256 (422)
T ss_pred ECCCEEEEeeEEEeCCCCCC-------------CCCcceeEEEEEcCCcEEEEeeEEecccceeee
Confidence 68999999999998642100 01123444444 577899999999887777765
No 73
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=70.27 E-value=28 Score=34.32 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=22.8
Q ss_pred CCCeEEeecCc-eEEEEeeEeecCCCCeEEeeeCCceEEEEc
Q 013239 245 DGDAISIFGSS-HIWIDHNSLSNCADGLIDAIMGSTAITVSN 285 (447)
Q Consensus 245 d~DaIsI~gs~-nVWIDHcS~S~~~DGliDi~~gS~~ITISn 285 (447)
..||+++.+.. .+.|.-.++..+.|-.|-. .+...++|++
T Consensus 95 cEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~-Ng~Gtv~I~n 135 (215)
T PF03211_consen 95 CEDAATFKGDGGTVTIIGGGARNASDKVFQH-NGGGTVTIKN 135 (215)
T ss_dssp SSESEEEESSEEEEEEESTEEEEEEEEEEEE--SSEEEEEEE
T ss_pred ceeeeEEcCCCceEEEeCCcccCCCccEEEe-cCceeEEEEe
Confidence 45666666555 6666666666666665555 4444556655
No 74
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=62.97 E-value=15 Score=26.24 Aligned_cols=41 Identities=29% Similarity=0.255 Sum_probs=26.6
Q ss_pred eEEeecCceEEEEeeEeecCCCCeEEeeeCCceEEEEcceecc
Q 013239 248 AISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTH 290 (447)
Q Consensus 248 aIsI~gs~nVWIDHcS~S~~~DGliDi~~gS~~ITISnn~f~~ 290 (447)
||.+..+++..|..+.++...||. .+ ..+.+.+|..|.|.+
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI-~~-~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGI-YL-TDSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEE-EE-EeCCCCEeECCEEEc
Confidence 466667777777777777777743 54 445666666666653
No 75
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=58.16 E-value=2.7e+02 Score=29.98 Aligned_cols=97 Identities=15% Similarity=0.180 Sum_probs=55.8
Q ss_pred EEEeccccEEEEceEEEeccCCCCcccccCCCCcCCcc---cCCCCeEEeecCceEEEEeeEeecCCCCeEEeeeCCceE
Q 013239 205 ITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRT---MADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAI 281 (447)
Q Consensus 205 i~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~---~~d~DaIsI~gs~nVWIDHcS~S~~~DGliDi~~gS~~I 281 (447)
+.+....+++||+-.|.+..- .-++... +...|+ -.-.-||.-.+...+=|-||.|..|.=|.+. ....
T Consensus 139 ~~f~~~t~~~~hgC~F~gf~g---~cl~~~~-~~~VrGC~F~~C~~gi~~~~~~~lsVk~C~FekC~igi~s----~G~~ 210 (386)
T PF01696_consen 139 VVFHANTNTLFHGCSFFGFHG---TCLESWA-GGEVRGCTFYGCWKGIVSRGKSKLSVKKCVFEKCVIGIVS----EGPA 210 (386)
T ss_pred eEEEecceEEEEeeEEecCcc---eeEEEcC-CcEEeeeEEEEEEEEeecCCcceEEeeheeeeheEEEEEe----cCCe
Confidence 444567788888888876531 1111000 000000 0012233333556777888888888777633 3478
Q ss_pred EEEcceeccCCeeeEecCCCCccCCccceEEEEeeEec
Q 013239 282 TVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFG 319 (447)
Q Consensus 282 TISnn~f~~H~k~mLiG~sD~~~~d~~~~VTihhN~F~ 319 (447)
+|++|-|.+-.-..|++. .-++.||.|-
T Consensus 211 ~i~hn~~~ec~Cf~l~~g----------~g~i~~N~v~ 238 (386)
T PF01696_consen 211 RIRHNCASECGCFVLMKG----------TGSIKHNMVC 238 (386)
T ss_pred EEecceecccceEEEEcc----------cEEEeccEEe
Confidence 888999988766666654 3477888874
No 76
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=48.32 E-value=3.2e+02 Score=28.09 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=21.2
Q ss_pred ceEEEEeeEecCCCcCCCceeccCeEEEEcceeeC
Q 013239 309 MQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTH 343 (447)
Q Consensus 309 ~~VTihhN~F~~~~~qR~Pr~R~G~~HvvNN~y~n 343 (447)
.++|+.++.. . +-.|.|---.+.+.|.-+.+
T Consensus 194 kNltliNC~I-~---g~QpLCY~~~L~l~nC~~~~ 224 (277)
T PF12541_consen 194 KNLTLINCTI-E---GTQPLCYCDNLVLENCTMID 224 (277)
T ss_pred CCeEEEEeEE-e---ccCccEeecceEEeCcEeec
Confidence 4789999887 3 44577765566777777654
No 77
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=44.98 E-value=1.2e+02 Score=30.59 Aligned_cols=90 Identities=20% Similarity=0.187 Sum_probs=54.0
Q ss_pred ecCCcEEEccCceEE-EecCceEEEeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEeec------Cce
Q 013239 184 MNSFKTIDGRGVNVH-IANGACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFG------SSH 256 (447)
Q Consensus 184 I~SnkTI~G~gA~~~-I~~G~gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~g------s~n 256 (447)
..++.+|.|.+-..- +..|.+|.|..+ +..|+|-+|+++. .++|.+.+ ..+
T Consensus 95 ~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~~---------------------~~GI~v~g~~~~~~i~~ 152 (246)
T PF07602_consen 95 LANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNNG---------------------REGIFVTGTSANPGING 152 (246)
T ss_pred ecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECCc---------------------cccEEEEeeecCCcccc
Confidence 366677777532111 123668888765 9999999999752 24455443 235
Q ss_pred EEEEeeEeecCCCCeEEeeeC--CceEEEEcceeccCCeeeE
Q 013239 257 IWIDHNSLSNCADGLIDAIMG--STAITVSNNYFTHHNEVML 296 (447)
Q Consensus 257 VWIDHcS~S~~~DGliDi~~g--S~~ITISnn~f~~H~k~mL 296 (447)
+.|.-+++....-|. ++... ....+|.||+|++-..++.
T Consensus 153 ~vI~GN~~~~~~~Gi-~i~~~~~~~~n~I~NN~I~~N~~Gi~ 193 (246)
T PF07602_consen 153 NVISGNSIYFNKTGI-SISDNAAPVENKIENNIIENNNIGIV 193 (246)
T ss_pred eEeecceEEecCcCe-EEEcccCCccceeeccEEEeCCcCeE
Confidence 556666777666664 33211 1224789999997555543
No 78
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=38.46 E-value=3.9e+02 Score=26.17 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=44.3
Q ss_pred CceEEEEeeEeecC-CCCeEEee-----eCCceEEEEcceeccCCee--eEecCCCCccCC-ccceEEEEeeEecCCCcC
Q 013239 254 SSHIWIDHNSLSNC-ADGLIDAI-----MGSTAITVSNNYFTHHNEV--MLLGHSDSYTRD-KVMQVTIAYNHFGEGLIQ 324 (447)
Q Consensus 254 s~nVWIDHcS~S~~-~DGliDi~-----~gS~~ITISnn~f~~H~k~--mLiG~sD~~~~d-~~~~VTihhN~F~~~~~q 324 (447)
+++|+|.|+.|..+ ....++.. .|-.+..|-||.|+.-..+ .-+-......+. ....+++..|.+ -++.+
T Consensus 33 a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII-~NT~~ 111 (198)
T PF08480_consen 33 AKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNII-VNTRK 111 (198)
T ss_pred cccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceE-eeeee
Confidence 57999999999985 34444432 4456789999999953322 222222212233 356677777888 47777
Q ss_pred C
Q 013239 325 R 325 (447)
Q Consensus 325 R 325 (447)
|
T Consensus 112 r 112 (198)
T PF08480_consen 112 R 112 (198)
T ss_pred c
Confidence 7
No 79
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=37.56 E-value=1.5e+02 Score=30.43 Aligned_cols=94 Identities=13% Similarity=0.123 Sum_probs=51.3
Q ss_pred EeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEeecCceEEEEeeEeecCCCCeEEeeeCCceEEEEcc
Q 013239 207 IQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNN 286 (447)
Q Consensus 207 i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~~~DGliDi~~gS~~ITISnn 286 (447)
+.+++|..|.|.+|.++.. .+..++||-+++|.|.|-+ =+++ +++++|.+|
T Consensus 15 Lf~~~d~~l~~~~f~dGES------------------------~LKes~nI~~~~~~F~~KY----P~Wh-~~~~~i~~~ 65 (277)
T PF12541_consen 15 LFGSHDLRLENCTFADGES------------------------PLKESRNIELKNCIFKWKY----PLWH-SDNIKIENC 65 (277)
T ss_pred ccccCCCEEEeeEEeCCCc------------------------ccccccceEEECCEEeeEC----ceEE-ECCeEEEee
Confidence 3467899999999985421 1245677888888887621 1122 455666666
Q ss_pred eeccCCeeeEecCCCC-----cc--C---CccceEEEEeeEecCCCcCCCceec
Q 013239 287 YFTHHNEVMLLGHSDS-----YT--R---DKVMQVTIAYNHFGEGLIQRMPRCR 330 (447)
Q Consensus 287 ~f~~H~k~mLiG~sD~-----~~--~---d~~~~VTihhN~F~~~~~qR~Pr~R 330 (447)
.|.+-.+..|+=..+- .. + -+-..+++-+-.| .+..+=...|+
T Consensus 66 ~f~~~aRa~iWYs~~i~m~d~~i~apK~fR~~~~i~L~nv~~-~~A~Et~W~c~ 118 (277)
T PF12541_consen 66 YFTEMARAAIWYSNNITMKDSVIQAPKMFRECSNITLENVDI-PDADETLWNCR 118 (277)
T ss_pred EEeecceeeeeEeCCEEEEeeeccCchHhhcccCcEEEeeEe-CCCcccCEEeC
Confidence 6665443333321110 00 0 0123566666666 45566666665
No 80
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=32.34 E-value=88 Score=32.68 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=27.0
Q ss_pred ccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEeecCceEEEEeeEeecC
Q 013239 209 FITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNC 267 (447)
Q Consensus 209 ~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~~ 267 (447)
+.++.||||++-+++.|.. .....-|.-.+.|+|..|..||...+-++
T Consensus 266 ngkhfvirnvkaknitpdf-----------skkagidnatvaiygcdnfvidni~mvns 313 (464)
T PRK10123 266 NGKHFVIRNIKAKNITPDF-----------SKKAGIDNATVAIYGCDNFVIDNIEMINS 313 (464)
T ss_pred CCcEEEEEeeeccccCCCc-----------hhhcCCCcceEEEEcccceEEeccccccc
Confidence 5566777777766655421 11111233445667777777777655544
No 81
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=32.09 E-value=1.1e+02 Score=21.73 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=31.6
Q ss_pred eEEEeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEeecCceEEEEeeEeecC
Q 013239 204 CITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNC 267 (447)
Q Consensus 204 gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~~ 267 (447)
||.+..+++..|++=+|.+ ..|||.+..+++--|..+.++..
T Consensus 1 GI~l~~s~~~~i~~N~i~~----------------------~~~GI~~~~s~~n~i~~N~~~~n 42 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASN----------------------NSYGIYLTDSSNNTLSNNTASSN 42 (44)
T ss_pred CEEEEecCCCEEECcEEeC----------------------CCCEEEEEeCCCCEeECCEEEcC
Confidence 4666677777777777764 34699999998888888887753
No 82
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=22.26 E-value=1.9e+02 Score=32.00 Aligned_cols=52 Identities=21% Similarity=0.182 Sum_probs=33.7
Q ss_pred eEEEeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEee-cCceEEEEeeEeecCCCCeEE
Q 013239 204 CITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF-GSSHIWIDHNSLSNCADGLID 273 (447)
Q Consensus 204 gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~-gs~nVWIDHcS~S~~~DGliD 273 (447)
.+.+ .+++++.+||.|++-.. . .+.-|+-+. .+.++-+.+|.|.-..|=|.+
T Consensus 264 T~~v-~~~~F~a~nitf~Ntag--------------~---~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~ 316 (497)
T PLN02698 264 TFTI-TGDGFIARDIGFKNAAG--------------P---KGEQAIALSITSDHSVLYRCSIAGYQDTLYA 316 (497)
T ss_pred eEEE-ECCCeEEEeeEEEECCC--------------C---CCCceEEEEecCCcEEEEcceeecccchhee
Confidence 3444 58999999999998531 1 122344443 477888888888876555543
No 83
>PF07822 Toxin_13: Neurotoxin B-IV-like protein; InterPro: IPR012497 The members of this family resemble neurotoxin B-IV (P01525 from SWISSPROT), which is a crustacean-selective neurotoxin produced by the marine worm Cerebratulus lacteus. This highly cationic peptide is approximately 55 residues and is arranged to form two antiparallel helices connected by a well-defined loop in a hairpin structure. The branches of the hairpin are linked by four disulphide bonds. Three residues identified as being important for activity, namely Arg-17, -25 and -34, are found on the same face of the molecule, while another residue important for activity, Trp30, is on the opposite side. The protein's mode of action is not entirely understood, but it may act on voltage-gated sodium channels, possibly by binding to an as yet uncharacterised site on these proteins. Its site of interaction may also be less specific, for example it may interact with negatively charged membrane lipids []. ; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1VIB_A.
Probab=22.05 E-value=15 Score=28.15 Aligned_cols=22 Identities=41% Similarity=1.007 Sum_probs=14.4
Q ss_pred cccccccCcccccccccccc-Cc
Q 013239 101 IDDCWRCDSRWYLRRKRLAD-CA 122 (447)
Q Consensus 101 id~cwr~~~~w~~~r~~lA~-~A 122 (447)
-|+|-||+..|+..|-.-|. |+
T Consensus 20 yd~ci~cqgkwagkrgkcaahc~ 42 (55)
T PF07822_consen 20 YDDCIRCQGKWAGKRGKCAAHCI 42 (55)
T ss_dssp HHHH--TTGGGTT-HHHHHHHHH
T ss_pred hhHHheecceeccccCcchhhee
Confidence 48999999999988766543 44
No 84
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=20.40 E-value=5.6e+02 Score=23.25 Aligned_cols=71 Identities=17% Similarity=0.092 Sum_probs=45.7
Q ss_pred cccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEeecCceEEEEeeEeec---CCCCeEEeeeCCceE-EEEc
Q 013239 210 ITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSN---CADGLIDAIMGSTAI-TVSN 285 (447)
Q Consensus 210 a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI~gs~nVWIDHcS~S~---~~DGliDi~~gS~~I-TISn 285 (447)
..++-|+|.++.-++--.++. ++ ... ...+.|.+.|......+|--|.-++ +..|.||+..+.+.| ||.|
T Consensus 14 ~~~l~i~Na~L~~GKfy~~~~-kd--~ei---s~~~v~~~~i~~~~~~~i~scGr~~~~sGTEGsfdl~dg~~kI~~lyW 87 (131)
T PF06355_consen 14 SGDLKIKNAQLSWGKFYRDGN-KD--DEI---SPDDVNGIVIPPGGSYSICSCGREGSPSGTEGSFDLYDGDTKICTLYW 87 (131)
T ss_pred CccEEEEccEeccCccccCCC-cC--CEe---CccccCceEecCCCeEEEEEecCCCCCcCceEEEEEEeCCEEEEEEEE
Confidence 347888888887665321110 00 000 1345678888877888888887755 689999998776666 6665
Q ss_pred c
Q 013239 286 N 286 (447)
Q Consensus 286 n 286 (447)
.
T Consensus 88 d 88 (131)
T PF06355_consen 88 D 88 (131)
T ss_pred e
Confidence 4
Done!