Query 013240
Match_columns 447
No_of_seqs 227 out of 3022
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 01:50:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013240.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013240hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 2.3E-47 4.9E-52 368.8 27.9 346 40-396 22-380 (493)
2 PTZ00102 disulphide isomerase; 100.0 1.3E-39 2.9E-44 331.4 37.0 328 42-393 31-368 (477)
3 TIGR01130 ER_PDI_fam protein d 100.0 4.8E-39 1E-43 326.4 35.0 338 44-393 2-357 (462)
4 KOG0912 Thiol-disulfide isomer 100.0 9.6E-36 2.1E-40 263.8 22.5 320 48-379 1-332 (375)
5 KOG4277 Uncharacterized conser 100.0 8E-36 1.7E-40 263.6 20.5 316 43-376 28-361 (468)
6 PF01216 Calsequestrin: Calseq 100.0 5.2E-31 1.1E-35 238.9 33.6 348 9-372 3-374 (383)
7 cd03006 PDI_a_EFP1_N PDIa fami 99.9 2.4E-23 5.1E-28 166.8 12.5 104 39-145 5-113 (113)
8 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 2.1E-22 4.5E-27 159.9 11.5 99 44-145 2-101 (101)
9 cd02996 PDI_a_ERp44 PDIa famil 99.9 9E-22 2E-26 158.3 12.6 103 43-145 1-108 (108)
10 cd03007 PDI_a_ERp29_N PDIa fam 99.9 8.3E-22 1.8E-26 156.6 10.1 98 44-148 2-115 (116)
11 PF00085 Thioredoxin: Thioredo 99.9 5.3E-21 1.1E-25 152.4 14.0 101 45-148 1-103 (103)
12 PTZ00443 Thioredoxin domain-co 99.9 7.4E-21 1.6E-25 170.2 15.2 106 42-150 29-140 (224)
13 cd02994 PDI_a_TMX PDIa family, 99.9 7.7E-21 1.7E-25 151.0 12.6 101 43-147 1-101 (101)
14 cd03065 PDI_b_Calsequestrin_N 99.9 1.1E-20 2.3E-25 152.3 12.9 110 39-149 5-119 (120)
15 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 7.4E-21 1.6E-25 151.9 11.4 99 44-145 2-104 (104)
16 PF13848 Thioredoxin_6: Thiore 99.8 4.3E-19 9.3E-24 157.1 18.4 172 184-364 10-184 (184)
17 KOG0191 Thioredoxin/protein di 99.8 2.8E-19 6E-24 176.1 17.7 206 43-253 29-254 (383)
18 cd03005 PDI_a_ERp46 PDIa famil 99.8 1.2E-19 2.6E-24 144.3 12.3 101 44-145 1-102 (102)
19 KOG0910 Thioredoxin-like prote 99.8 1E-19 2.2E-24 148.0 11.5 105 43-150 43-149 (150)
20 cd03002 PDI_a_MPD1_like PDI fa 99.8 1.3E-19 2.8E-24 146.1 11.6 100 44-146 1-109 (109)
21 cd03001 PDI_a_P5 PDIa family, 99.8 3.4E-19 7.3E-24 142.0 12.2 99 44-145 1-102 (103)
22 cd02963 TRX_DnaJ TRX domain, D 99.8 3.6E-19 7.8E-24 143.5 12.2 101 46-148 7-111 (111)
23 COG3118 Thioredoxin domain-con 99.8 3.8E-19 8.3E-24 160.2 12.6 106 43-151 23-132 (304)
24 cd02993 PDI_a_APS_reductase PD 99.8 7.8E-19 1.7E-23 141.2 11.7 100 44-145 2-109 (109)
25 TIGR01126 pdi_dom protein disu 99.8 7.9E-19 1.7E-23 139.6 11.6 100 48-148 1-101 (102)
26 cd02962 TMX2 TMX2 family; comp 99.8 3E-18 6.5E-23 144.3 15.1 92 41-134 26-126 (152)
27 cd03000 PDI_a_TMX3 PDIa family 99.8 1.3E-18 2.8E-23 138.8 12.4 101 46-148 3-103 (104)
28 KOG1731 FAD-dependent sulfhydr 99.8 6.7E-19 1.5E-23 170.4 12.6 229 33-263 29-288 (606)
29 cd02997 PDI_a_PDIR PDIa family 99.8 1.5E-18 3.2E-23 138.5 12.3 101 44-145 1-104 (104)
30 cd02999 PDI_a_ERp44_like PDIa 99.8 1.1E-18 2.4E-23 137.6 10.6 84 58-145 16-100 (100)
31 PRK09381 trxA thioredoxin; Pro 99.8 7.5E-18 1.6E-22 135.7 13.9 105 42-149 2-108 (109)
32 PRK10996 thioredoxin 2; Provis 99.8 6.8E-18 1.5E-22 141.5 14.1 105 42-149 34-139 (139)
33 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 3E-18 6.4E-23 136.8 11.3 100 44-145 1-104 (104)
34 cd02956 ybbN ybbN protein fami 99.8 4.9E-18 1.1E-22 133.4 11.9 93 51-146 1-96 (96)
35 PHA02278 thioredoxin-like prot 99.8 5.8E-18 1.2E-22 133.4 12.0 92 50-144 4-100 (103)
36 cd02998 PDI_a_ERp38 PDIa famil 99.8 6.3E-18 1.4E-22 135.1 11.2 101 44-145 1-105 (105)
37 cd02948 TRX_NDPK TRX domain, T 99.8 1.7E-17 3.7E-22 131.7 12.6 97 48-147 5-101 (102)
38 cd02961 PDI_a_family Protein D 99.7 8.9E-18 1.9E-22 132.9 10.2 98 47-145 2-101 (101)
39 cd02992 PDI_a_QSOX PDIa family 99.7 2.1E-17 4.6E-22 133.6 12.2 100 43-142 1-109 (114)
40 cd02954 DIM1 Dim1 family; Dim1 99.7 1.8E-17 3.9E-22 131.3 10.1 85 50-137 2-89 (114)
41 cd02985 TRX_CDSP32 TRX family, 99.7 1.1E-16 2.3E-21 127.3 12.2 93 49-146 2-100 (103)
42 PLN02309 5'-adenylylsulfate re 99.7 8.6E-17 1.9E-21 158.0 14.0 108 39-148 341-456 (457)
43 cd02957 Phd_like Phosducin (Ph 99.7 1.2E-16 2.5E-21 129.3 12.2 89 42-135 3-95 (113)
44 TIGR00424 APS_reduc 5'-adenyly 99.7 9.4E-17 2E-21 157.8 13.3 106 41-148 349-462 (463)
45 cd02965 HyaE HyaE family; HyaE 99.7 1.2E-16 2.6E-21 125.7 11.0 97 43-142 10-109 (111)
46 TIGR01068 thioredoxin thioredo 99.7 2E-16 4.3E-21 125.3 12.4 98 48-148 1-100 (101)
47 TIGR02187 GlrX_arch Glutaredox 99.7 5.4E-16 1.2E-20 140.3 16.6 188 51-249 11-214 (215)
48 cd02989 Phd_like_TxnDC9 Phosdu 99.7 3E-16 6.6E-21 126.5 12.9 89 42-134 3-93 (113)
49 KOG0190 Protein disulfide isom 99.7 2.4E-16 5.3E-21 153.6 11.0 105 43-150 366-474 (493)
50 cd02984 TRX_PICOT TRX domain, 99.7 1.1E-15 2.4E-20 120.2 12.0 94 49-145 1-96 (97)
51 cd02953 DsbDgamma DsbD gamma f 99.6 1E-15 2.2E-20 122.1 9.7 93 51-146 2-104 (104)
52 PTZ00051 thioredoxin; Provisio 99.6 2E-15 4.3E-20 119.0 11.0 92 46-142 3-96 (98)
53 PTZ00102 disulphide isomerase; 99.6 1.9E-15 4.1E-20 154.1 13.7 113 41-154 355-470 (477)
54 PLN00410 U5 snRNP protein, DIM 99.6 5.8E-15 1.3E-19 121.7 12.7 83 49-134 10-97 (142)
55 KOG0907 Thioredoxin [Posttrans 99.6 4.5E-15 9.8E-20 116.9 11.1 84 59-147 20-104 (106)
56 cd02950 TxlA TRX-like protein 99.6 8.2E-15 1.8E-19 123.1 12.3 98 50-150 10-111 (142)
57 cd02949 TRX_NTR TRX domain, no 99.6 9.5E-15 2.1E-19 114.8 11.9 86 58-146 11-97 (97)
58 cd02947 TRX_family TRX family; 99.6 1.3E-14 2.7E-19 112.6 11.7 91 51-145 1-92 (93)
59 cd02987 Phd_like_Phd Phosducin 99.6 2.1E-14 4.6E-19 124.7 12.9 88 42-134 61-153 (175)
60 cd02986 DLP Dim1 family, Dim1- 99.6 2.7E-14 5.8E-19 112.2 10.5 79 50-131 2-82 (114)
61 KOG0908 Thioredoxin-like prote 99.6 2.9E-14 6.3E-19 124.3 10.8 103 45-151 3-108 (288)
62 TIGR01130 ER_PDI_fam protein d 99.5 5.4E-14 1.2E-18 142.9 13.4 112 41-154 344-459 (462)
63 cd02975 PfPDO_like_N Pyrococcu 99.5 6.4E-14 1.4E-18 113.0 11.1 95 51-149 13-110 (113)
64 TIGR01295 PedC_BrcD bacterioci 99.5 1.2E-13 2.6E-18 112.7 12.1 97 44-145 7-120 (122)
65 PRK03147 thiol-disulfide oxido 99.5 7.3E-13 1.6E-17 115.9 16.2 108 39-148 40-171 (173)
66 KOG0191 Thioredoxin/protein di 99.5 1.1E-13 2.4E-18 136.4 10.1 108 44-152 145-255 (383)
67 cd02982 PDI_b'_family Protein 99.5 3.2E-13 6.8E-18 107.4 10.0 94 52-148 4-102 (103)
68 cd02951 SoxW SoxW family; SoxW 99.5 6E-13 1.3E-17 109.8 11.7 97 51-150 4-120 (125)
69 cd02988 Phd_like_VIAF Phosduci 99.4 1.1E-12 2.5E-17 115.3 12.3 87 41-134 80-170 (192)
70 cd02983 P5_C P5 family, C-term 99.4 2.1E-12 4.7E-17 106.3 12.7 116 254-376 3-125 (130)
71 TIGR00411 redox_disulf_1 small 99.4 1.2E-12 2.7E-17 99.3 10.5 80 63-148 2-81 (82)
72 cd02952 TRP14_like Human TRX-r 99.4 4.1E-12 9E-17 102.1 9.9 79 49-130 8-103 (119)
73 PTZ00062 glutaredoxin; Provisi 99.4 2.5E-11 5.3E-16 107.2 15.7 92 49-153 5-98 (204)
74 PRK14018 trifunctional thiored 99.3 4.2E-11 9.2E-16 119.6 14.3 89 58-148 54-172 (521)
75 PRK15412 thiol:disulfide inter 99.3 2.1E-10 4.7E-15 101.2 15.8 87 58-150 66-177 (185)
76 cd03072 PDI_b'_ERp44 PDIb' fam 99.3 5E-11 1.1E-15 95.4 10.4 105 255-369 1-111 (111)
77 PHA02125 thioredoxin-like prot 99.2 5.4E-11 1.2E-15 88.3 9.4 68 64-143 2-71 (75)
78 TIGR02187 GlrX_arch Glutaredox 99.2 5.3E-11 1.1E-15 107.7 11.1 95 47-147 119-214 (215)
79 PRK00293 dipZ thiol:disulfide 99.2 1.3E-10 2.8E-15 119.6 15.2 101 44-148 453-569 (571)
80 cd02959 ERp19 Endoplasmic reti 99.2 2.8E-11 6E-16 98.1 6.7 92 51-145 10-109 (117)
81 TIGR00412 redox_disulf_2 small 99.2 7.7E-11 1.7E-15 87.7 8.2 73 64-145 2-75 (76)
82 TIGR02738 TrbB type-F conjugat 99.2 5.3E-10 1.2E-14 94.6 13.2 89 55-148 45-152 (153)
83 PF13098 Thioredoxin_2: Thiore 99.2 9.2E-11 2E-15 94.7 8.1 87 59-145 4-112 (112)
84 PF13848 Thioredoxin_6: Thiore 99.2 1.3E-09 2.9E-14 96.1 16.0 163 77-249 7-184 (184)
85 TIGR00385 dsbE periplasmic pro 99.2 6.4E-10 1.4E-14 97.1 13.2 88 57-150 60-172 (173)
86 cd02955 SSP411 TRX domain, SSP 99.1 3.9E-10 8.5E-15 91.7 9.7 79 49-130 4-94 (124)
87 KOG0913 Thiol-disulfide isomer 99.1 3.2E-11 6.9E-16 104.8 2.7 103 43-149 24-126 (248)
88 PRK11509 hydrogenase-1 operon 99.1 1.7E-09 3.8E-14 87.8 12.1 107 45-153 19-128 (132)
89 KOG0914 Thioredoxin-like prote 99.0 6.3E-10 1.4E-14 95.3 7.6 90 39-130 120-218 (265)
90 cd03009 TryX_like_TryX_NRX Try 99.0 1.3E-09 2.9E-14 90.5 9.5 73 59-131 17-114 (131)
91 cd02973 TRX_GRX_like Thioredox 99.0 9.5E-10 2.1E-14 79.8 6.8 57 63-123 2-58 (67)
92 TIGR02740 TraF-like TraF-like 99.0 3.1E-09 6.7E-14 98.9 11.2 87 59-150 165-265 (271)
93 cd03011 TlpA_like_ScsD_MtbDsbE 99.0 2.9E-09 6.2E-14 87.5 9.6 93 47-143 7-120 (123)
94 cd02964 TryX_like_family Trypa 98.9 3.3E-09 7.1E-14 88.3 8.5 75 59-133 16-116 (132)
95 cd03010 TlpA_like_DsbE TlpA-li 98.9 5.7E-09 1.2E-13 86.2 9.5 78 59-141 24-126 (127)
96 cd03026 AhpF_NTD_C TRX-GRX-lik 98.9 9.1E-09 2E-13 78.8 9.2 76 60-142 12-87 (89)
97 cd02966 TlpA_like_family TlpA- 98.9 8.3E-09 1.8E-13 83.0 9.1 73 60-134 19-116 (116)
98 PRK13728 conjugal transfer pro 98.9 5.6E-08 1.2E-12 83.8 14.2 83 64-151 73-173 (181)
99 PF13905 Thioredoxin_8: Thiore 98.9 1.7E-08 3.6E-13 78.7 9.5 66 60-126 1-91 (95)
100 cd03073 PDI_b'_ERp72_ERp57 PDI 98.9 3.1E-08 6.6E-13 79.2 11.1 101 256-366 2-111 (111)
101 PF07912 ERp29_N: ERp29, N-ter 98.8 1.1E-07 2.4E-12 74.7 13.0 106 43-150 4-120 (126)
102 cd02982 PDI_b'_family Protein 98.8 3.6E-08 7.7E-13 78.1 10.4 97 262-366 4-103 (103)
103 cd03008 TryX_like_RdCVF Trypar 98.8 2.7E-08 5.8E-13 83.2 10.0 75 59-133 24-129 (146)
104 cd02958 UAS UAS family; UAS is 98.8 4E-08 8.7E-13 79.4 9.6 93 54-149 11-111 (114)
105 TIGR02661 MauD methylamine deh 98.7 2.7E-07 5.9E-12 81.6 13.6 86 59-147 73-177 (189)
106 PF13899 Thioredoxin_7: Thiore 98.7 4.6E-08 1E-12 74.0 7.3 70 52-125 9-81 (82)
107 COG4232 Thiol:disulfide interc 98.7 7.5E-08 1.6E-12 95.7 10.7 101 46-148 457-567 (569)
108 TIGR01626 ytfJ_HI0045 conserve 98.7 2E-07 4.4E-12 80.8 12.1 80 59-144 58-175 (184)
109 COG2143 Thioredoxin-related pr 98.7 4.1E-07 8.9E-12 74.2 12.7 91 53-146 35-146 (182)
110 PLN02919 haloacid dehalogenase 98.7 9.8E-08 2.1E-12 105.1 11.4 90 59-150 419-537 (1057)
111 cd02967 mauD Methylamine utili 98.6 1.1E-07 2.3E-12 76.9 7.3 60 59-121 20-82 (114)
112 smart00594 UAS UAS domain. 98.6 2.7E-07 5.8E-12 75.5 8.7 92 51-145 14-121 (122)
113 cd02960 AGR Anterior Gradient 98.6 1.5E-07 3.2E-12 76.6 6.9 72 53-129 16-92 (130)
114 cd03012 TlpA_like_DipZ_like Tl 98.5 5.4E-07 1.2E-11 74.2 9.1 74 59-134 22-124 (126)
115 KOG2603 Oligosaccharyltransfer 98.5 7.2E-07 1.6E-11 81.3 9.3 115 40-154 37-171 (331)
116 PLN02399 phospholipid hydroper 98.5 2.1E-06 4.5E-11 77.9 12.2 90 59-150 98-235 (236)
117 TIGR02196 GlrX_YruB Glutaredox 98.5 7.9E-07 1.7E-11 65.4 8.0 68 64-145 2-73 (74)
118 PTZ00056 glutathione peroxidas 98.4 1.6E-06 3.4E-11 77.3 9.8 90 59-150 38-179 (199)
119 cd01659 TRX_superfamily Thiore 98.3 2.5E-06 5.4E-11 60.3 6.9 60 64-127 1-63 (69)
120 cd03074 PDI_b'_Calsequestrin_C 98.3 1.4E-05 3E-10 61.0 10.8 108 253-366 1-120 (120)
121 COG0526 TrxA Thiol-disulfide i 98.3 3.4E-06 7.4E-11 67.7 8.3 69 60-131 32-103 (127)
122 PF00085 Thioredoxin: Thioredo 98.3 1.8E-05 3.8E-10 62.3 12.2 99 256-364 2-102 (103)
123 cd02969 PRX_like1 Peroxiredoxi 98.3 9.9E-06 2.1E-10 70.5 11.5 91 59-152 24-155 (171)
124 PLN02412 probable glutathione 98.3 8.8E-06 1.9E-10 70.5 10.9 90 59-150 28-165 (167)
125 cd03003 PDI_a_ERdj5_N PDIa fam 98.3 1.1E-05 2.5E-10 63.4 10.5 99 253-361 1-100 (101)
126 cd03066 PDI_b_Calsequestrin_mi 98.2 4.2E-06 9E-11 66.1 7.6 94 152-251 1-101 (102)
127 PF08534 Redoxin: Redoxin; In 98.2 1.2E-05 2.5E-10 68.0 10.8 77 59-137 27-136 (146)
128 cd02981 PDI_b_family Protein D 98.2 4.1E-06 8.8E-11 65.4 7.2 91 154-250 2-97 (97)
129 cd03004 PDI_a_ERdj5_C PDIa fam 98.2 1.6E-05 3.6E-10 62.8 10.8 100 253-362 1-104 (104)
130 PF02114 Phosducin: Phosducin; 98.2 1.2E-05 2.6E-10 74.3 11.2 85 42-131 124-212 (265)
131 PF00578 AhpC-TSA: AhpC/TSA fa 98.2 1.3E-05 2.9E-10 65.5 10.1 72 59-132 24-123 (124)
132 KOG2501 Thioredoxin, nucleored 98.2 5.2E-06 1.1E-10 69.0 7.1 75 55-130 29-129 (157)
133 cd03069 PDI_b_ERp57 PDIb famil 98.2 5.7E-06 1.2E-10 65.5 7.2 91 153-250 2-103 (104)
134 TIGR02200 GlrX_actino Glutared 98.2 8.2E-06 1.8E-10 60.6 7.3 57 64-130 2-63 (77)
135 PF13192 Thioredoxin_3: Thiore 98.2 1.7E-05 3.8E-10 58.8 8.8 73 65-146 3-76 (76)
136 TIGR02540 gpx7 putative glutat 98.2 2.1E-05 4.6E-10 67.1 10.6 88 59-148 21-152 (153)
137 PF13728 TraF: F plasmid trans 98.1 1.5E-05 3.3E-10 71.6 9.8 81 59-144 119-213 (215)
138 cd00340 GSH_Peroxidase Glutath 98.1 1.3E-05 2.9E-10 68.3 8.0 42 60-104 22-63 (152)
139 KOG0912 Thiol-disulfide isomer 98.1 7.8E-05 1.7E-09 67.9 12.9 187 161-367 5-209 (375)
140 cd02981 PDI_b_family Protein D 98.0 4.1E-05 8.9E-10 59.7 9.3 87 51-147 8-96 (97)
141 cd03001 PDI_a_P5 PDIa family, 98.0 8E-05 1.7E-09 58.6 10.7 98 255-362 2-102 (103)
142 cd03072 PDI_b'_ERp44 PDIb' fam 98.0 6.9E-05 1.5E-09 59.9 10.1 104 45-150 1-109 (111)
143 cd02996 PDI_a_ERp44 PDIa famil 97.9 7.8E-05 1.7E-09 59.4 9.5 98 255-362 3-108 (108)
144 KOG1672 ATP binding protein [P 97.9 4.9E-05 1.1E-09 64.7 7.7 89 42-134 65-155 (211)
145 TIGR01126 pdi_dom protein disu 97.9 0.00015 3.2E-09 56.9 10.1 98 258-365 1-101 (102)
146 cd03002 PDI_a_MPD1_like PDI fa 97.9 0.00015 3.3E-09 57.7 10.1 103 255-362 2-108 (109)
147 TIGR03137 AhpC peroxiredoxin. 97.9 0.0003 6.5E-09 62.1 12.7 85 60-146 31-153 (187)
148 TIGR02739 TraF type-F conjugat 97.9 0.00011 2.4E-09 67.3 10.0 86 59-149 149-248 (256)
149 cd02965 HyaE HyaE family; HyaE 97.8 0.00013 2.8E-09 57.8 9.0 89 254-345 11-101 (111)
150 TIGR03143 AhpF_homolog putativ 97.8 0.00048 1E-08 71.6 15.8 177 59-247 365-554 (555)
151 PRK10996 thioredoxin 2; Provis 97.8 0.00031 6.8E-09 58.7 11.8 99 257-365 39-138 (139)
152 cd02991 UAS_ETEA UAS family, E 97.8 0.00024 5.3E-09 57.2 10.4 89 58-150 15-114 (116)
153 TIGR02180 GRX_euk Glutaredoxin 97.8 5.9E-05 1.3E-09 57.0 6.5 59 64-129 1-64 (84)
154 PRK10877 protein disulfide iso 97.8 6.7E-05 1.5E-09 68.4 8.0 82 60-148 107-230 (232)
155 cd03065 PDI_b_Calsequestrin_N 97.8 0.00015 3.2E-09 58.6 8.7 103 254-366 10-119 (120)
156 cd03067 PDI_b_PDIR_N PDIb fami 97.8 0.00015 3.3E-09 54.8 7.9 94 50-147 9-110 (112)
157 cd02989 Phd_like_TxnDC9 Phosdu 97.8 0.00048 1.1E-08 55.3 11.6 98 261-362 13-112 (113)
158 PF03190 Thioredox_DsbH: Prote 97.8 8.1E-05 1.7E-09 62.9 7.3 85 43-130 18-116 (163)
159 cd03017 PRX_BCP Peroxiredoxin 97.8 0.00013 2.9E-09 61.0 8.7 81 60-142 23-136 (140)
160 PRK11200 grxA glutaredoxin 1; 97.8 0.00018 3.8E-09 54.6 8.6 76 63-149 2-83 (85)
161 cd03007 PDI_a_ERp29_N PDIa fam 97.8 0.00011 2.4E-09 58.7 7.4 94 153-250 3-115 (116)
162 cd03006 PDI_a_EFP1_N PDIa fami 97.8 0.00028 6E-09 56.6 9.8 99 253-361 9-112 (113)
163 cd03068 PDI_b_ERp72 PDIb famil 97.8 7.9E-05 1.7E-09 59.2 6.4 94 152-250 1-107 (107)
164 cd02957 Phd_like Phosducin (Ph 97.7 0.00029 6.4E-09 56.6 9.8 104 254-362 5-112 (113)
165 PF06110 DUF953: Eukaryotic pr 97.7 0.00021 4.4E-09 57.4 8.4 74 51-127 6-99 (119)
166 PTZ00256 glutathione peroxidas 97.7 0.00059 1.3E-08 60.0 12.2 43 60-104 40-83 (183)
167 cd03071 PDI_b'_NRX PDIb' famil 97.7 0.00067 1.4E-08 51.9 10.5 101 257-366 3-115 (116)
168 PF14595 Thioredoxin_9: Thiore 97.7 0.00019 4.1E-09 58.9 8.3 86 48-137 28-118 (129)
169 cd02970 PRX_like2 Peroxiredoxi 97.7 0.00025 5.5E-09 59.9 9.5 46 61-108 24-70 (149)
170 TIGR01068 thioredoxin thioredo 97.7 0.0005 1.1E-08 53.6 10.4 97 259-365 2-100 (101)
171 cd02961 PDI_a_family Protein D 97.7 0.00037 8E-09 54.2 9.6 96 257-362 2-101 (101)
172 PTZ00443 Thioredoxin domain-co 97.7 0.00065 1.4E-08 61.3 12.3 105 254-368 31-141 (224)
173 cd02983 P5_C P5 family, C-term 97.7 0.00084 1.8E-08 55.3 11.9 109 44-154 3-120 (130)
174 cd03015 PRX_Typ2cys Peroxiredo 97.7 0.0004 8.7E-09 60.5 10.3 87 60-148 29-156 (173)
175 PRK10382 alkyl hydroperoxide r 97.7 0.00084 1.8E-08 59.0 12.1 99 43-148 19-155 (187)
176 PRK09437 bcp thioredoxin-depen 97.6 0.00053 1.2E-08 58.4 10.5 79 59-139 29-143 (154)
177 PF01216 Calsequestrin: Calseq 97.6 0.0025 5.3E-08 59.6 15.2 200 152-372 35-253 (383)
178 PRK13703 conjugal pilus assemb 97.6 0.00038 8.2E-09 63.4 9.9 84 60-148 143-240 (248)
179 TIGR03143 AhpF_homolog putativ 97.6 0.00042 9.1E-09 72.0 11.4 94 45-145 460-554 (555)
180 cd02976 NrdH NrdH-redoxin (Nrd 97.6 0.00032 7E-09 51.0 7.4 67 64-144 2-72 (73)
181 cd02998 PDI_a_ERp38 PDIa famil 97.6 0.00052 1.1E-08 54.0 9.0 97 256-362 3-105 (105)
182 PRK09381 trxA thioredoxin; Pro 97.6 0.0012 2.6E-08 52.6 11.0 102 255-366 5-108 (109)
183 KOG4277 Uncharacterized conser 97.5 0.0024 5.1E-08 58.2 13.3 165 164-342 36-214 (468)
184 KOG3425 Uncharacterized conser 97.5 0.00055 1.2E-08 53.6 7.8 74 50-126 12-104 (128)
185 cd02995 PDI_a_PDI_a'_C PDIa fa 97.5 0.00083 1.8E-08 52.8 9.2 97 255-362 2-104 (104)
186 cd03005 PDI_a_ERp46 PDIa famil 97.5 0.00082 1.8E-08 52.7 9.0 96 256-362 3-102 (102)
187 cd02997 PDI_a_PDIR PDIa family 97.5 0.00084 1.8E-08 52.8 9.0 98 255-362 2-104 (104)
188 cd03073 PDI_b'_ERp72_ERp57 PDI 97.5 0.00097 2.1E-08 53.2 9.0 97 47-148 3-110 (111)
189 PF00462 Glutaredoxin: Glutare 97.5 0.00065 1.4E-08 47.6 7.1 55 64-129 1-59 (60)
190 PF11009 DUF2847: Protein of u 97.5 0.0018 3.8E-08 50.5 10.0 90 49-141 6-104 (105)
191 PRK15317 alkyl hydroperoxide r 97.5 0.0011 2.3E-08 68.5 11.6 100 44-150 99-199 (517)
192 cd02994 PDI_a_TMX PDIa family, 97.4 0.0016 3.5E-08 51.0 10.1 96 255-363 3-100 (101)
193 cd03020 DsbA_DsbC_DsbG DsbA fa 97.4 0.00051 1.1E-08 61.2 8.0 83 60-145 77-197 (197)
194 cd02968 SCO SCO (an acronym fo 97.4 0.00074 1.6E-08 56.6 8.4 47 59-105 21-69 (142)
195 cd03018 PRX_AhpE_like Peroxire 97.4 0.0031 6.8E-08 53.2 12.3 44 59-104 27-71 (149)
196 PTZ00051 thioredoxin; Provisio 97.4 0.0016 3.5E-08 50.6 9.7 85 257-345 5-89 (98)
197 KOG0910 Thioredoxin-like prote 97.4 0.0013 2.9E-08 54.3 9.2 105 253-367 43-149 (150)
198 PRK15000 peroxidase; Provision 97.4 0.0017 3.6E-08 57.9 10.4 88 59-148 33-161 (200)
199 PRK00522 tpx lipid hydroperoxi 97.4 0.0016 3.4E-08 56.4 9.7 42 59-104 43-85 (167)
200 PRK11509 hydrogenase-1 operon 97.3 0.0018 3.9E-08 52.9 9.3 109 249-369 16-127 (132)
201 PF07449 HyaE: Hydrogenase-1 e 97.3 0.0015 3.2E-08 51.2 8.4 92 43-138 9-104 (107)
202 cd02963 TRX_DnaJ TRX domain, D 97.3 0.0018 3.9E-08 51.8 9.1 96 259-364 10-110 (111)
203 cd02999 PDI_a_ERp44_like PDIa 97.3 0.0019 4E-08 50.6 8.7 83 269-362 17-100 (100)
204 cd02956 ybbN ybbN protein fami 97.3 0.0029 6.4E-08 48.9 9.6 84 270-363 12-96 (96)
205 cd03014 PRX_Atyp2cys Peroxired 97.3 0.0013 2.8E-08 55.2 8.1 43 59-105 25-68 (143)
206 TIGR02183 GRXA Glutaredoxin, G 97.3 0.0017 3.6E-08 49.4 7.7 74 64-148 2-81 (86)
207 KOG3414 Component of the U4/U6 97.3 0.0027 5.8E-08 50.2 8.8 78 51-131 12-91 (142)
208 PRK13190 putative peroxiredoxi 97.2 0.0019 4.1E-08 57.7 9.3 88 60-149 27-154 (202)
209 cd02993 PDI_a_APS_reductase PD 97.2 0.0047 1E-07 49.2 10.3 99 255-362 3-109 (109)
210 cd02947 TRX_family TRX family; 97.2 0.0037 8E-08 47.3 9.4 90 263-362 3-92 (93)
211 PRK10606 btuE putative glutath 97.2 0.00098 2.1E-08 58.3 6.2 80 60-150 25-116 (183)
212 cd02954 DIM1 Dim1 family; Dim1 97.2 0.016 3.4E-07 46.3 12.5 81 261-345 3-86 (114)
213 cd02987 Phd_like_Phd Phosducin 97.1 0.0059 1.3E-07 53.1 11.1 108 252-364 61-173 (175)
214 cd02971 PRX_family Peroxiredox 97.1 0.0029 6.4E-08 52.7 9.0 45 59-105 21-66 (140)
215 cd02950 TxlA TRX-like protein 97.1 0.0075 1.6E-07 50.6 11.3 102 261-372 11-116 (142)
216 PTZ00137 2-Cys peroxiredoxin; 97.1 0.01 2.3E-07 54.8 13.0 87 60-148 98-224 (261)
217 cd02948 TRX_NDPK TRX domain, T 97.1 0.0081 1.8E-07 47.2 10.8 95 258-364 5-101 (102)
218 KOG0911 Glutaredoxin-related p 97.1 0.0007 1.5E-08 59.4 4.9 78 56-137 13-91 (227)
219 COG3118 Thioredoxin domain-con 97.1 0.0047 1E-07 56.9 10.2 105 254-368 24-132 (304)
220 cd03067 PDI_b_PDIR_N PDIb fami 97.1 0.0066 1.4E-07 46.1 9.0 98 259-364 8-110 (112)
221 PF02966 DIM1: Mitosis protein 97.0 0.01 2.2E-07 47.8 10.4 79 50-131 8-88 (133)
222 cd03023 DsbA_Com1_like DsbA fa 97.0 0.0036 7.8E-08 52.9 8.7 30 60-89 5-34 (154)
223 cd02975 PfPDO_like_N Pyrococcu 97.0 0.0067 1.5E-07 48.7 9.7 89 269-367 21-111 (113)
224 cd02984 TRX_PICOT TRX domain, 97.0 0.0068 1.5E-07 46.9 9.5 82 260-345 2-86 (97)
225 TIGR03140 AhpF alkyl hydropero 97.0 0.006 1.3E-07 62.9 11.6 99 44-149 100-199 (515)
226 cd03419 GRX_GRXh_1_2_like Glut 97.0 0.0023 5E-08 47.9 6.5 57 64-129 2-63 (82)
227 TIGR02190 GlrX-dom Glutaredoxi 97.0 0.0038 8.3E-08 46.5 7.3 58 61-129 7-67 (79)
228 cd03016 PRX_1cys Peroxiredoxin 97.0 0.008 1.7E-07 53.8 10.6 85 62-148 28-153 (203)
229 PRK13599 putative peroxiredoxi 97.0 0.009 1.9E-07 53.8 10.8 86 61-148 29-155 (215)
230 cd02949 TRX_NTR TRX domain, no 96.9 0.0089 1.9E-07 46.4 9.4 87 266-362 9-96 (97)
231 cd03000 PDI_a_TMX3 PDIa family 96.9 0.011 2.5E-07 46.4 9.6 93 261-365 7-103 (104)
232 cd03069 PDI_b_ERp57 PDIb famil 96.8 0.016 3.4E-07 45.7 9.9 89 49-148 7-103 (104)
233 cd02988 Phd_like_VIAF Phosduci 96.8 0.023 4.9E-07 50.2 11.8 108 250-364 79-190 (192)
234 TIGR02189 GlrX-like_plant Glut 96.8 0.0042 9E-08 48.5 6.3 63 55-130 3-72 (99)
235 PRK11657 dsbG disulfide isomer 96.8 0.01 2.2E-07 54.9 9.7 81 61-146 118-249 (251)
236 PRK13189 peroxiredoxin; Provis 96.8 0.01 2.3E-07 53.7 9.6 87 60-148 35-162 (222)
237 cd02962 TMX2 TMX2 family; comp 96.7 0.017 3.6E-07 48.9 10.1 89 255-344 30-125 (152)
238 PF13462 Thioredoxin_4: Thiore 96.7 0.011 2.4E-07 50.5 9.2 84 59-147 11-162 (162)
239 cd02953 DsbDgamma DsbD gamma f 96.7 0.02 4.3E-07 45.0 10.0 91 262-362 3-103 (104)
240 cd02066 GRX_family Glutaredoxi 96.7 0.0054 1.2E-07 44.2 6.2 56 64-130 2-61 (72)
241 cd03029 GRX_hybridPRX5 Glutare 96.7 0.011 2.5E-07 43.0 7.6 66 64-145 3-71 (72)
242 PF05768 DUF836: Glutaredoxin- 96.7 0.009 2E-07 44.7 7.1 77 64-146 2-81 (81)
243 PRK10329 glutaredoxin-like pro 96.7 0.019 4.1E-07 42.9 8.8 71 64-148 3-76 (81)
244 PTZ00253 tryparedoxin peroxida 96.6 0.022 4.8E-07 50.8 10.7 87 60-148 36-163 (199)
245 TIGR02194 GlrX_NrdH Glutaredox 96.6 0.0047 1E-07 45.0 5.3 66 65-143 2-70 (72)
246 PRK13191 putative peroxiredoxi 96.6 0.019 4.1E-07 51.8 10.2 87 60-148 33-160 (215)
247 cd02985 TRX_CDSP32 TRX family, 96.6 0.027 5.8E-07 44.3 9.7 82 260-345 3-89 (103)
248 PHA03050 glutaredoxin; Provisi 96.5 0.0083 1.8E-07 47.6 6.2 68 53-130 6-80 (108)
249 KOG2640 Thioredoxin [Function 96.5 0.0036 7.8E-08 57.7 4.4 97 52-152 66-165 (319)
250 cd03066 PDI_b_Calsequestrin_mi 96.4 0.054 1.2E-06 42.5 10.7 94 45-148 2-100 (102)
251 TIGR02181 GRX_bact Glutaredoxi 96.4 0.0047 1E-07 45.9 4.1 55 64-129 1-59 (79)
252 cd03418 GRX_GRXb_1_3_like Glut 96.4 0.0075 1.6E-07 44.2 5.1 56 64-130 2-62 (75)
253 cd03027 GRX_DEP Glutaredoxin ( 96.3 0.012 2.7E-07 42.9 6.0 54 64-128 3-60 (73)
254 PLN02309 5'-adenylylsulfate re 96.3 0.054 1.2E-06 54.3 12.1 104 253-365 345-456 (457)
255 cd02992 PDI_a_QSOX PDIa family 96.2 0.1 2.2E-06 41.9 11.4 80 255-338 3-89 (114)
256 TIGR00424 APS_reduc 5'-adenyly 96.2 0.068 1.5E-06 53.6 12.2 104 253-365 351-462 (463)
257 PHA02278 thioredoxin-like prot 96.2 0.094 2E-06 41.2 10.5 82 260-345 4-90 (103)
258 cd02986 DLP Dim1 family, Dim1- 96.0 0.21 4.6E-06 39.7 11.8 96 269-368 13-113 (114)
259 KOG3170 Conserved phosducin-li 96.0 0.058 1.3E-06 46.6 9.1 110 41-157 89-208 (240)
260 cd02972 DsbA_family DsbA famil 96.0 0.022 4.8E-07 43.6 6.3 59 64-125 1-91 (98)
261 TIGR01295 PedC_BrcD bacterioci 95.8 0.13 2.8E-06 41.8 10.3 102 255-363 8-121 (122)
262 TIGR00365 monothiol glutaredox 95.8 0.034 7.4E-07 43.2 6.5 67 51-129 3-77 (97)
263 COG0695 GrxC Glutaredoxin and 95.7 0.032 6.9E-07 41.6 5.7 51 64-123 3-59 (80)
264 PLN00410 U5 snRNP protein, DIM 95.6 0.3 6.5E-06 40.6 11.6 109 260-372 11-126 (142)
265 PRK10638 glutaredoxin 3; Provi 95.5 0.058 1.2E-06 40.5 6.6 56 64-130 4-63 (83)
266 TIGR00411 redox_disulf_1 small 95.4 0.13 2.9E-06 38.1 8.3 73 280-365 8-81 (82)
267 cd03028 GRX_PICOT_like Glutare 95.2 0.06 1.3E-06 41.1 6.0 65 54-130 2-74 (90)
268 PF07912 ERp29_N: ERp29, N-ter 95.2 0.68 1.5E-05 37.0 11.8 104 255-364 6-117 (126)
269 KOG0907 Thioredoxin [Posttrans 95.1 0.17 3.7E-06 39.9 8.4 67 270-340 21-87 (106)
270 PRK15317 alkyl hydroperoxide r 95.1 0.88 1.9E-05 47.0 16.1 113 217-333 60-175 (517)
271 PF13743 Thioredoxin_5: Thiore 95.1 0.016 3.4E-07 50.6 2.7 36 66-104 2-37 (176)
272 cd02951 SoxW SoxW family; SoxW 95.1 0.23 5E-06 40.4 9.5 98 263-370 6-123 (125)
273 TIGR03140 AhpF alkyl hydropero 95.0 1.1 2.3E-05 46.4 16.2 113 217-333 61-176 (515)
274 cd02955 SSP411 TRX domain, SSP 94.5 0.33 7.1E-06 39.5 8.9 105 258-366 3-119 (124)
275 cd03026 AhpF_NTD_C TRX-GRX-lik 94.4 0.26 5.7E-06 37.5 7.7 63 268-333 9-71 (89)
276 cd03068 PDI_b_ERp72 PDIb famil 94.4 0.69 1.5E-05 36.5 10.3 92 46-147 3-106 (107)
277 KOG0908 Thioredoxin-like prote 94.3 0.11 2.3E-06 46.7 5.9 96 152-250 2-105 (288)
278 cd03070 PDI_b_ERp44 PDIb famil 94.2 0.11 2.4E-06 39.5 4.9 78 154-239 2-85 (91)
279 PRK10954 periplasmic protein d 94.0 0.19 4.1E-06 45.0 7.1 40 61-103 38-80 (207)
280 cd02952 TRP14_like Human TRX-r 93.9 0.47 1E-05 38.2 8.4 76 260-337 9-100 (119)
281 PF02630 SCO1-SenC: SCO1/SenC; 93.7 0.74 1.6E-05 40.0 10.0 49 59-107 51-100 (174)
282 PF02114 Phosducin: Phosducin; 93.7 0.33 7.2E-06 45.1 8.2 114 252-372 124-242 (265)
283 PTZ00062 glutaredoxin; Provisi 93.6 0.86 1.9E-05 40.6 10.3 72 261-344 7-79 (204)
284 PRK10824 glutaredoxin-4; Provi 93.2 0.18 4E-06 40.3 4.9 67 52-130 7-81 (115)
285 COG1999 Uncharacterized protei 93.1 3.2 6.9E-05 37.1 13.4 60 49-108 56-117 (207)
286 cd02973 TRX_GRX_like Thioredox 93.0 0.55 1.2E-05 33.2 6.8 50 281-333 9-58 (67)
287 KOG3171 Conserved phosducin-li 92.5 0.67 1.5E-05 40.6 7.7 84 42-130 137-224 (273)
288 PRK12759 bifunctional gluaredo 92.4 0.27 5.9E-06 49.0 6.1 54 64-128 4-69 (410)
289 KOG1672 ATP binding protein [P 92.0 1 2.2E-05 39.0 8.1 117 242-362 56-174 (211)
290 cd03019 DsbA_DsbA DsbA family, 91.7 0.27 5.9E-06 42.5 4.7 42 59-103 14-55 (178)
291 PF00837 T4_deiodinase: Iodoth 91.7 2.1 4.5E-05 38.7 10.1 55 38-92 77-134 (237)
292 COG1225 Bcp Peroxiredoxin [Pos 91.0 1.3 2.8E-05 37.4 7.8 65 30-103 7-72 (157)
293 KOG1752 Glutaredoxin and relat 90.3 1.2 2.5E-05 35.0 6.4 68 52-130 6-78 (104)
294 PRK03147 thiol-disulfide oxido 88.7 4.9 0.00011 34.4 10.0 43 314-365 128-171 (173)
295 cd03013 PRX5_like Peroxiredoxi 87.8 1.7 3.7E-05 36.8 6.4 54 60-115 29-88 (155)
296 KOG1731 FAD-dependent sulfhydr 87.6 4.8 0.00011 40.9 10.0 63 185-247 78-149 (606)
297 cd02966 TlpA_like_family TlpA- 86.9 4.2 9.1E-05 31.5 7.9 65 270-338 19-108 (116)
298 PF07449 HyaE: Hydrogenase-1 e 86.2 0.84 1.8E-05 35.9 3.2 81 255-338 11-93 (107)
299 PRK00293 dipZ thiol:disulfide 86.0 8.6 0.00019 40.2 11.5 88 269-366 473-570 (571)
300 PF13098 Thioredoxin_2: Thiore 85.8 4 8.7E-05 32.0 7.2 84 269-362 4-112 (112)
301 cd02959 ERp19 Endoplasmic reti 85.6 5.9 0.00013 31.8 8.1 76 261-338 10-87 (117)
302 PF11009 DUF2847: Protein of u 85.6 9 0.0002 30.0 8.6 77 259-338 6-89 (105)
303 cd02978 KaiB_like KaiB-like fa 85.4 4.3 9.2E-05 29.4 6.2 61 63-125 3-63 (72)
304 PF14595 Thioredoxin_9: Thiore 85.1 6.7 0.00015 32.1 8.2 80 258-337 28-107 (129)
305 cd02958 UAS UAS family; UAS is 83.8 14 0.0003 29.3 9.5 92 265-366 12-111 (114)
306 KOG2603 Oligosaccharyltransfer 83.8 39 0.00085 31.9 13.8 116 251-370 38-170 (331)
307 TIGR02740 TraF-like TraF-like 83.6 12 0.00027 34.9 10.4 89 270-367 166-265 (271)
308 PF13728 TraF: F plasmid trans 82.8 9.6 0.00021 34.3 9.0 80 271-359 121-211 (215)
309 COG4232 Thiol:disulfide interc 82.4 8.7 0.00019 39.4 9.3 96 154-250 457-567 (569)
310 smart00594 UAS UAS domain. 81.7 16 0.00035 29.4 9.2 88 266-362 23-121 (122)
311 KOG0914 Thioredoxin-like prote 79.5 4 8.7E-05 36.1 5.0 63 274-337 148-215 (265)
312 PRK14018 trifunctional thiored 79.4 16 0.00035 37.5 10.2 45 312-365 127-172 (521)
313 cd03041 GST_N_2GST_N GST_N fam 79.2 15 0.00032 26.7 7.5 71 64-148 2-76 (77)
314 PF13417 GST_N_3: Glutathione 78.7 22 0.00047 25.6 9.0 72 66-151 1-73 (75)
315 cd03040 GST_N_mPGES2 GST_N fam 78.7 17 0.00037 26.2 7.8 71 64-149 2-76 (77)
316 PF13905 Thioredoxin_8: Thiore 77.9 23 0.00051 26.6 8.7 23 313-338 71-93 (95)
317 KOG3170 Conserved phosducin-li 77.6 33 0.00071 30.2 9.8 116 242-364 80-199 (240)
318 TIGR02739 TraF type-F conjugat 76.0 21 0.00045 33.1 9.0 85 272-365 152-247 (256)
319 COG3019 Predicted metal-bindin 76.0 14 0.0003 30.3 6.8 74 62-148 26-103 (149)
320 COG1331 Highly conserved prote 75.3 6.4 0.00014 41.1 6.0 86 42-130 23-122 (667)
321 PF09673 TrbC_Ftype: Type-F co 74.3 11 0.00025 29.9 6.1 45 77-126 36-80 (113)
322 PF06053 DUF929: Domain of unk 73.8 13 0.00027 34.2 6.9 41 44-87 45-85 (249)
323 cd03060 GST_N_Omega_like GST_N 73.5 16 0.00034 26.0 6.2 52 65-123 2-54 (71)
324 cd03031 GRX_GRX_like Glutaredo 73.2 8.7 0.00019 32.2 5.3 51 64-123 2-66 (147)
325 PRK13703 conjugal pilus assemb 72.8 28 0.0006 32.1 8.9 89 272-369 145-244 (248)
326 cd02977 ArsC_family Arsenate R 72.8 4.5 9.6E-05 31.7 3.4 32 65-105 2-33 (105)
327 TIGR02654 circ_KaiB circadian 72.6 19 0.00041 27.1 6.4 75 61-137 3-77 (87)
328 cd03037 GST_N_GRX2 GST_N famil 72.4 24 0.00051 24.9 7.0 68 66-146 3-70 (71)
329 KOG2792 Putative cytochrome C 72.1 81 0.0018 29.0 12.8 135 60-251 139-275 (280)
330 cd02974 AhpF_NTD_N Alkyl hydro 71.7 43 0.00093 25.6 8.6 71 59-145 18-90 (94)
331 cd03009 TryX_like_TryX_NRX Try 71.3 29 0.00063 28.0 8.2 23 315-340 90-112 (131)
332 KOG3414 Component of the U4/U6 70.8 55 0.0012 26.5 10.3 99 271-372 23-126 (142)
333 TIGR02742 TrbC_Ftype type-F co 70.7 17 0.00036 29.8 6.3 63 78-146 38-112 (130)
334 cd03035 ArsC_Yffb Arsenate Red 70.7 5.9 0.00013 31.1 3.6 20 65-84 2-21 (105)
335 KOG2507 Ubiquitin regulatory p 70.3 36 0.00079 33.4 9.3 90 58-149 16-111 (506)
336 PRK09301 circadian clock prote 69.7 22 0.00047 27.7 6.3 75 61-137 6-80 (103)
337 cd03036 ArsC_like Arsenate Red 69.1 6.6 0.00014 31.1 3.6 33 65-106 2-34 (111)
338 PF13743 Thioredoxin_5: Thiore 68.7 3.1 6.7E-05 36.2 1.8 35 106-140 136-173 (176)
339 PF13192 Thioredoxin_3: Thiore 68.5 28 0.00061 25.2 6.7 68 282-363 9-76 (76)
340 cd02969 PRX_like1 Peroxiredoxi 68.0 75 0.0016 27.0 11.1 56 314-372 99-158 (171)
341 cd01659 TRX_superfamily Thiore 66.6 33 0.00071 22.3 7.2 50 285-337 11-63 (69)
342 PRK01655 spxA transcriptional 66.1 9.1 0.0002 31.4 4.0 34 64-106 2-35 (131)
343 COG3531 Predicted protein-disu 65.7 10 0.00023 33.1 4.3 43 107-149 164-209 (212)
344 cd03010 TlpA_like_DsbE TlpA-li 64.1 60 0.0013 25.9 8.6 22 314-338 90-111 (127)
345 PF05984 Cytomega_UL20A: Cytom 64.0 9.3 0.0002 28.0 3.1 27 7-33 3-29 (100)
346 PF06783 UPF0239: Uncharacteri 63.5 6.7 0.00014 29.1 2.3 19 396-414 30-49 (85)
347 TIGR01617 arsC_related transcr 60.3 13 0.00027 29.8 3.8 33 65-106 2-34 (117)
348 KOG3171 Conserved phosducin-li 60.1 15 0.00033 32.4 4.3 103 152-255 139-255 (273)
349 PRK12559 transcriptional regul 59.6 15 0.00033 30.1 4.1 21 64-84 2-22 (131)
350 cd03011 TlpA_like_ScsD_MtbDsbE 59.1 24 0.00053 28.0 5.4 57 185-244 63-119 (123)
351 PF01323 DSBA: DSBA-like thior 57.9 14 0.00031 32.1 4.1 38 105-145 155-192 (193)
352 cd02978 KaiB_like KaiB-like fa 57.4 39 0.00084 24.5 5.4 54 275-332 5-60 (72)
353 cd00570 GST_N_family Glutathio 57.4 35 0.00076 23.1 5.4 52 65-123 2-55 (71)
354 cd02964 TryX_like_family Trypa 55.4 1E+02 0.0022 24.9 8.5 21 316-339 91-111 (132)
355 PHA03075 glutaredoxin-like pro 55.3 13 0.00028 29.4 2.8 36 61-103 2-37 (123)
356 cd03032 ArsC_Spx Arsenate Redu 54.1 24 0.00051 28.1 4.4 20 65-84 3-22 (115)
357 PRK13344 spxA transcriptional 52.8 23 0.00051 29.0 4.2 32 64-104 2-33 (132)
358 PRK13617 psbV cytochrome c-550 52.2 11 0.00024 32.2 2.2 33 38-78 44-76 (170)
359 TIGR00412 redox_disulf_2 small 51.5 85 0.0018 22.6 6.7 49 281-336 8-57 (76)
360 cd03059 GST_N_SspA GST_N famil 50.3 85 0.0018 21.9 8.4 69 65-147 2-71 (73)
361 PF09822 ABC_transp_aux: ABC-t 49.8 2.2E+02 0.0047 26.4 11.9 66 257-322 11-86 (271)
362 PRK15412 thiol:disulfide inter 49.6 44 0.00096 29.1 5.8 45 206-250 131-175 (185)
363 COG0278 Glutaredoxin-related p 49.6 67 0.0015 24.9 5.8 72 51-130 6-82 (105)
364 PF00578 AhpC-TSA: AhpC/TSA fa 49.6 1E+02 0.0022 24.1 7.6 43 269-311 24-68 (124)
365 PF03190 Thioredox_DsbH: Prote 49.6 1.5E+02 0.0034 25.3 8.7 95 244-338 9-113 (163)
366 PF07423 DUF1510: Protein of u 49.4 17 0.00037 32.6 3.1 27 390-416 16-42 (217)
367 cd03051 GST_N_GTT2_like GST_N 48.9 31 0.00068 24.2 4.0 52 65-123 2-57 (74)
368 COG5510 Predicted small secret 48.4 32 0.00068 22.0 3.2 24 6-29 3-26 (44)
369 PF07689 KaiB: KaiB domain; I 48.2 17 0.00037 27.1 2.4 53 69-123 5-57 (82)
370 PHA02125 thioredoxin-like prot 47.8 1E+02 0.0022 22.1 6.7 44 281-332 8-51 (75)
371 PF05768 DUF836: Glutaredoxin- 47.7 97 0.0021 22.7 6.5 78 277-363 4-81 (81)
372 cd03074 PDI_b'_Calsequestrin_C 44.7 1.5E+02 0.0033 23.3 10.3 101 47-148 5-119 (120)
373 cd03045 GST_N_Delta_Epsilon GS 44.6 45 0.00097 23.5 4.3 51 65-122 2-56 (74)
374 TIGR00385 dsbE periplasmic pro 44.1 31 0.00068 29.6 3.9 45 206-250 126-170 (173)
375 PRK11200 grxA glutaredoxin 1; 43.5 1.3E+02 0.0028 22.1 7.3 56 277-333 5-64 (85)
376 cd02967 mauD Methylamine utili 43.2 91 0.002 24.1 6.3 29 271-300 22-50 (114)
377 COG3634 AhpF Alkyl hydroperoxi 43.0 1.1E+02 0.0023 29.8 7.2 93 46-146 101-195 (520)
378 TIGR02742 TrbC_Ftype type-F co 42.9 1.1E+02 0.0023 25.1 6.5 23 205-227 59-81 (130)
379 COG5494 Predicted thioredoxin/ 42.5 2.2E+02 0.0047 25.4 8.5 72 67-148 16-87 (265)
380 PF04592 SelP_N: Selenoprotein 42.0 53 0.0012 29.7 4.9 46 59-104 25-71 (238)
381 PF09822 ABC_transp_aux: ABC-t 40.5 3E+02 0.0065 25.4 12.6 76 43-118 7-89 (271)
382 cd02990 UAS_FAF1 UAS family, F 40.3 2.1E+02 0.0046 23.6 10.1 88 57-148 18-132 (136)
383 PF09673 TrbC_Ftype: Type-F co 39.8 1.4E+02 0.003 23.7 6.6 22 205-226 59-80 (113)
384 cd02991 UAS_ETEA UAS family, E 39.5 1.9E+02 0.0042 22.9 9.4 59 303-367 53-114 (116)
385 COG0821 gcpE 1-hydroxy-2-methy 37.9 1.2E+02 0.0026 29.1 6.7 79 71-149 263-351 (361)
386 cd03022 DsbA_HCCA_Iso DsbA fam 37.8 38 0.00082 29.3 3.5 35 107-145 157-191 (192)
387 PF04835 Pox_A9: A9 protein co 37.2 26 0.00056 23.4 1.7 45 358-411 5-49 (54)
388 PF08139 LPAM_1: Prokaryotic m 36.6 22 0.00047 19.9 1.1 18 4-21 6-23 (25)
389 cd03024 DsbA_FrnE DsbA family, 36.4 48 0.001 29.0 4.0 38 105-145 163-200 (201)
390 cd03055 GST_N_Omega GST_N fami 36.4 1.6E+02 0.0034 21.9 6.3 53 64-123 19-72 (89)
391 PF06764 DUF1223: Protein of u 35.8 1.4E+02 0.0029 26.6 6.6 23 66-88 4-26 (202)
392 PRK10081 entericidin B membran 35.7 54 0.0012 21.6 2.9 8 4-11 1-8 (48)
393 COG2761 FrnE Predicted dithiol 35.3 57 0.0012 29.5 4.1 41 108-151 175-215 (225)
394 PF13778 DUF4174: Domain of un 35.2 2.3E+02 0.005 22.6 8.8 93 265-365 5-111 (118)
395 COG4545 Glutaredoxin-related p 34.7 32 0.0007 24.9 2.0 21 65-85 5-25 (85)
396 cd03033 ArsC_15kD Arsenate Red 34.1 48 0.001 26.3 3.2 21 64-84 2-22 (113)
397 PF04134 DUF393: Protein of un 32.5 74 0.0016 24.9 4.1 57 67-128 2-61 (114)
398 PF02966 DIM1: Mitosis protein 32.3 2.8E+02 0.0061 22.7 9.8 62 268-333 17-79 (133)
399 PRK02655 psbI photosystem II r 31.2 58 0.0013 19.9 2.3 29 392-423 7-35 (38)
400 COG3700 AphA Acid phosphatase 31.0 1.5E+02 0.0034 25.6 5.7 10 83-92 52-61 (237)
401 PRK09301 circadian clock prote 30.9 1.6E+02 0.0035 23.0 5.4 61 272-336 7-69 (103)
402 PRK13730 conjugal transfer pil 30.8 84 0.0018 27.8 4.3 42 105-146 150-191 (212)
403 TIGR03521 GldG gliding-associa 30.7 6.4E+02 0.014 26.3 14.7 78 42-119 29-116 (552)
404 KOG1422 Intracellular Cl- chan 30.7 2.3E+02 0.005 25.2 6.9 69 71-152 20-88 (221)
405 KOG0855 Alkyl hydroperoxide re 30.7 82 0.0018 26.9 4.0 29 58-87 88-122 (211)
406 TIGR02738 TrbB type-F conjugat 30.4 3.3E+02 0.0071 22.9 10.8 84 271-365 51-152 (153)
407 PF02532 PsbI: Photosystem II 30.0 95 0.0021 18.9 3.1 19 393-411 8-26 (36)
408 KOG2501 Thioredoxin, nucleored 29.9 1.1E+02 0.0023 26.0 4.6 55 173-228 70-126 (157)
409 TIGR02654 circ_KaiB circadian 29.5 1.7E+02 0.0038 22.0 5.2 57 276-336 8-66 (87)
410 COG1651 DsbG Protein-disulfide 28.4 70 0.0015 29.1 3.7 39 106-148 204-242 (244)
411 cd03019 DsbA_DsbA DsbA family, 28.1 74 0.0016 27.0 3.7 23 106-130 132-154 (178)
412 PLN03207 stomagen; Provisional 28.0 67 0.0015 24.5 2.8 15 59-73 63-77 (113)
413 CHL00024 psbI photosystem II p 27.7 98 0.0021 18.8 2.9 29 392-423 7-35 (36)
414 COG4594 FecB ABC-type Fe3+-cit 26.8 98 0.0021 28.5 4.1 17 263-279 235-251 (310)
415 PF12273 RCR: Chitin synthesis 25.2 34 0.00074 27.9 0.9 8 399-406 9-16 (130)
416 cd03012 TlpA_like_DipZ_like Tl 25.0 2.4E+02 0.0053 22.3 6.0 25 205-229 93-117 (126)
417 PRK00366 ispG 4-hydroxy-3-meth 24.9 2.9E+02 0.0062 26.9 7.1 75 71-145 270-353 (360)
418 PLN02919 haloacid dehalogenase 24.6 2.1E+02 0.0046 32.6 7.2 44 207-250 492-535 (1057)
419 cd03025 DsbA_FrnE_like DsbA fa 24.1 81 0.0017 27.3 3.2 26 64-89 3-28 (193)
420 PF06624 RAMP4: Ribosome assoc 23.7 16 0.00034 25.7 -1.1 20 391-410 40-59 (63)
421 PF01323 DSBA: DSBA-like thior 23.6 95 0.0021 26.7 3.6 38 64-103 2-39 (193)
422 PF13778 DUF4174: Domain of un 23.2 3.9E+02 0.0084 21.3 8.8 93 54-148 4-111 (118)
423 COG1651 DsbG Protein-disulfide 22.8 79 0.0017 28.7 3.0 39 206-250 204-242 (244)
424 cd02974 AhpF_NTD_N Alkyl hydro 22.7 3.5E+02 0.0076 20.6 9.2 76 269-365 17-93 (94)
425 PRK13165 cytochrome c-type bio 22.7 1E+02 0.0022 26.2 3.3 19 1-19 1-19 (160)
426 COG1393 ArsC Arsenate reductas 22.5 97 0.0021 24.8 3.1 21 64-84 3-23 (117)
427 PRK10954 periplasmic protein d 22.4 67 0.0015 28.5 2.4 22 107-130 157-178 (207)
428 PF10138 vWA-TerF-like: vWA fo 22.3 5.6E+02 0.012 22.7 8.8 106 210-320 34-152 (200)
429 COG0386 BtuE Glutathione perox 22.2 4.9E+02 0.011 22.1 9.7 75 44-122 9-95 (162)
430 cd03025 DsbA_FrnE_like DsbA fa 22.0 68 0.0015 27.8 2.3 23 106-128 158-180 (193)
431 PRK13254 cytochrome c-type bio 21.4 1.1E+02 0.0025 25.6 3.3 21 1-21 1-21 (148)
432 PF05545 FixQ: Cbb3-type cytoc 21.3 69 0.0015 21.0 1.7 17 395-411 16-32 (49)
433 PF06491 Disulph_isomer: Disul 21.1 4.7E+02 0.01 21.4 11.2 100 44-148 17-131 (136)
434 PRK13620 psbV cytochrome c-550 21.1 1E+02 0.0022 27.3 3.0 31 38-76 89-119 (215)
435 COG2143 Thioredoxin-related pr 21.1 1.7E+02 0.0037 24.8 4.2 37 206-242 104-140 (182)
436 PF11337 DUF3139: Protein of u 21.1 1.2E+02 0.0026 22.6 3.1 8 4-11 1-8 (85)
437 cd03056 GST_N_4 GST_N family, 20.9 2.6E+02 0.0057 19.2 4.9 52 65-123 2-57 (73)
438 PF08806 Sep15_SelM: Sep15/Sel 20.9 1.3E+02 0.0027 22.2 3.1 35 217-251 41-76 (78)
439 TIGR01672 AphA HAD superfamily 20.7 2.5E+02 0.0054 25.7 5.7 10 83-92 52-61 (237)
440 KOG0852 Alkyl hydroperoxide re 20.7 2E+02 0.0044 24.9 4.6 43 60-102 33-76 (196)
441 PF13908 Shisa: Wnt and FGF in 20.6 68 0.0015 27.8 2.0 18 392-409 81-98 (179)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-47 Score=368.82 Aligned_cols=346 Identities=28% Similarity=0.456 Sum_probs=293.1
Q ss_pred cCCCCeEEeChhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCcccc
Q 013240 40 KIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP 119 (447)
Q Consensus 40 ~~~~~v~~l~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~P 119 (447)
.....|+.||..||+..++.+..++|.||||||+||+++.|+|.++|..|++.+++|.+++|||+.+.++|.+|+|+|||
T Consensus 22 ~~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 22 KAEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred CcccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 45689999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred EEEEEeCCee-EEecCCCCHHHHHHHHHHhcCCCceecCChhHHHHHHHhcCCcccEEEeecCCh----hHHHHHHHHhh
Q 013240 120 TLKIFMHGIP-TEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDE----SVMSNLALKYK 194 (447)
Q Consensus 120 tl~~~~~g~~-~~y~g~~~~~~i~~fi~~~~~~~v~~i~s~~~~~~~l~~~~~~~~~vi~f~~~~----~~~~~~a~~~~ 194 (447)
|+.+|++|.. ..|.|+|.+++|+.|++++.+|++..+.+.++++.++...+ +.+|+|+++. ..+...|..++
T Consensus 102 TlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~---~~vig~F~d~~~~~~~~~~~a~~l~ 178 (493)
T KOG0190|consen 102 TLKIFRNGRSAQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKD---VVVIGFFKDLESLAESFFDAASKLR 178 (493)
T ss_pred eEEEEecCCcceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCc---eEEEEEecccccchHHHHHHHHhcc
Confidence 9999999985 88999999999999999999999999999999999998854 4888888642 36777888888
Q ss_pred hhhHhHHhhccchhhhhhcCCCC--CCeEEEEcCCCCCcccccCCCChHHHHHHHHhhCCCCccccChhhHHhhhcCCCc
Q 013240 195 KKAWFAVAKDFSEDTMVLYDFDK--VPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRK 272 (447)
Q Consensus 195 ~~~~f~~~~~~~~~~~~~~~i~~--~P~l~~~~~~~~~~~~~~g~~~~~~i~~fI~~~~~p~~~~l~~~~~~~~~~~~~~ 272 (447)
+.+.|+ ++.+.++++.++.+. .+.++++++.++....|.|.++.+.|..||..+++|++.++|+.+...+.....+
T Consensus 179 ~d~~F~--~ts~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~ 256 (493)
T KOG0190|consen 179 DDYKFA--HTSDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVK 256 (493)
T ss_pred ccceee--ccCcHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhcccccceecccccceeeccccc
Confidence 888887 445788888888763 3458888887777777889999999999999999999999999888776665444
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHhHHhhcCCCCCCCCc-eEEEEeCCccceecCCCCCCC
Q 013240 273 IVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLP-KMVVWDGNENYLTVIGSESID 350 (447)
Q Consensus 273 ~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~~i~~~~~~P-~vvi~~~~~~y~~~~g~~~~~ 350 (447)
.-+.++........+.+.+.++.+|+.+++ ++|+++|...++..++.||+ .....| .+++.+.++.++.++ +
T Consensus 257 ~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d~e~~~~~~~~~Gl-~~~~~~~~~v~~~~~~~Ky~~~-----~ 330 (493)
T KOG0190|consen 257 LGLDFFVFFKCNRFEELRKKFEEVAKKFKGKLRFILIDPESFARVLEFFGL-EEEQLPIRAVILNEDGSKYPLE-----E 330 (493)
T ss_pred cceeEEeccccccHHHHHHHHHHHHHhcccceEEEEEChHHhhHHHHhcCc-ccccCCeeEEeeccccccccCc-----c
Confidence 444444333444667888999999999997 99999999999999999999 556666 555555554455554 3
Q ss_pred cccchhHHHHHHHHHhcCccccccccC--Cc-cc-ccceEEeecceehhH
Q 013240 351 EEDQGSQISRFLEGYREGRTEQKKVAG--PS-IF-GFVNSLIGIRSVYII 396 (447)
Q Consensus 351 ~~~~~~~i~~Fl~~~~~gkl~~~~ks~--p~-~~-~~~~~~v~~~~~~~~ 396 (447)
++.+.++|..|+.++++|++++++||+ |+ +. ++++.+||.|.-.|+
T Consensus 331 e~~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv 380 (493)
T KOG0190|consen 331 EELDQENIESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIV 380 (493)
T ss_pred ccccHHHHHHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHh
Confidence 456677899999999999999999999 44 33 799999999976554
No 2
>PTZ00102 disulphide isomerase; Provisional
Probab=100.00 E-value=1.3e-39 Score=331.42 Aligned_cols=328 Identities=28% Similarity=0.435 Sum_probs=264.3
Q ss_pred CCCeEEeChhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEE
Q 013240 42 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL 121 (447)
Q Consensus 42 ~~~v~~l~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl 121 (447)
...+..|+.++|+++++++++++|.||++||+||+++.|.|.++++.+++.+.++.++.|||+.++++|++|+|.++||+
T Consensus 31 ~~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~ 110 (477)
T PTZ00102 31 SEHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTI 110 (477)
T ss_pred CCCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEE
Confidence 36799999999999999899999999999999999999999999999887666799999999999999999999999999
Q ss_pred EEEeCCeeEEecCCCCHHHHHHHHHHhcCCCceecCChhHHHHHHHhcCCcccEEEeecCC-h----hHHHHHHHHhhhh
Q 013240 122 KIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-E----SVMSNLALKYKKK 196 (447)
Q Consensus 122 ~~~~~g~~~~y~g~~~~~~i~~fi~~~~~~~v~~i~s~~~~~~~l~~~~~~~~~vi~f~~~-~----~~~~~~a~~~~~~ 196 (447)
++|++|..+.|.|.++.+.|.+|+.+++.+++.++++..++..+.... .+.+++++.. + ..|.++|..++..
T Consensus 111 ~~~~~g~~~~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~f~~~a~~~~~~ 187 (477)
T PTZ00102 111 KFFNKGNPVNYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKI---FVAFYGEYTSKDSELYKKFEEVADKHREH 187 (477)
T ss_pred EEEECCceEEecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccC---cEEEEEEeccCCcHHHHHHHHHHHhcccc
Confidence 999999888999999999999999999999999999987776644332 2466665432 2 2577788888776
Q ss_pred hHhHHhhccchhhhhhcCCCCCCeEEEEcCCCCCcccccCCCChHHHHHHHHhhCCCCccccChhhHHhhhcCCCcEEEE
Q 013240 197 AWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLA 276 (447)
Q Consensus 197 ~~f~~~~~~~~~~~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~fI~~~~~p~~~~l~~~~~~~~~~~~~~~vl~ 276 (447)
..|.... +. ..+.+.+++... ....+.++.+.+.|.+||..+.+|++.+++..++..+...+.+++++
T Consensus 188 ~~F~~~~----------~~-~~~~~~~~~~~~-~~~~~~~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~~~~ 255 (477)
T PTZ00102 188 AKFFVKK----------HE-GKNKIYVLHKDE-EGVELFMGKTKEELEEFVSTESFPLFAEINAENYRRYISSGKDLVWF 255 (477)
T ss_pred ceEEEEc----------CC-CCCcEEEEecCC-CCcccCCCCCHHHHHHHHHHcCCCceeecCccchHHHhcCCccEEEE
Confidence 5554331 11 236778887643 33444455688999999999999999999999999988777765543
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHh-HHhhcCCCCCCCCceEEEEeCCccceecCCCCCCCcccc
Q 013240 277 IVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFAD-FADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQ 354 (447)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~-~~~~~~i~~~~~~P~vvi~~~~~~y~~~~g~~~~~~~~~ 354 (447)
+. ..++.+++.+.++++|+++++ +.|+|+|+.+++. +++.+|+ ..+|++++.+..++|... +.. ....+
T Consensus 256 ~~---~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~~~~~gi---~~~P~~~i~~~~~~y~~~-~~~--~~~~~ 326 (477)
T PTZ00102 256 CG---TTEDYDKYKSVVRKVARKLREKYAFVWLDTEQFGSHAKEHLLI---EEFPGLAYQSPAGRYLLP-PAK--ESFDS 326 (477)
T ss_pred ec---CHHHHHHHHHHHHHHHHhccCceEEEEEechhcchhHHHhcCc---ccCceEEEEcCCcccCCC-ccc--cccCC
Confidence 32 344456788999999999997 9999999999886 8889999 358999998866666532 211 12357
Q ss_pred hhHHHHHHHHHhcCccccccccCC--c-ccccceEEeeccee
Q 013240 355 GSQISRFLEGYREGRTEQKKVAGP--S-IFGFVNSLIGIRSV 393 (447)
Q Consensus 355 ~~~i~~Fl~~~~~gkl~~~~ks~p--~-~~~~~~~~v~~~~~ 393 (447)
.+.|.+|++++.+|++.++++|+| + ..+.++.++|.+.-
T Consensus 327 ~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~ 368 (477)
T PTZ00102 327 VEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFE 368 (477)
T ss_pred HHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchH
Confidence 899999999999999999999984 3 35678888776643
No 3
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=100.00 E-value=4.8e-39 Score=326.36 Aligned_cols=338 Identities=30% Similarity=0.464 Sum_probs=276.5
Q ss_pred CeEEeChhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEE
Q 013240 44 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123 (447)
Q Consensus 44 ~v~~l~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~ 123 (447)
.|+.|++++|+++++++++++|.|||+||++|+++.|.|.++++.+++.+.++.|+.|||+.++++|++++|.++||+++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 68899999999999999999999999999999999999999999998766779999999999999999999999999999
Q ss_pred EeCCee--EEecCCCCHHHHHHHHHHhcCCCceecCChhHHHHHHHhcCCcccEEEeecCC-h----hHHHHHHHHhhhh
Q 013240 124 FMHGIP--TEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-E----SVMSNLALKYKKK 196 (447)
Q Consensus 124 ~~~g~~--~~y~g~~~~~~i~~fi~~~~~~~v~~i~s~~~~~~~l~~~~~~~~~vi~f~~~-~----~~~~~~a~~~~~~ 196 (447)
|++|.. ..|.|.++.+.|.+|+.+.+.+.+.++++.++++.++...+ +.+|+|+.+ + ..+.++|..+++.
T Consensus 82 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~---~~vi~~~~~~~~~~~~~~~~~a~~~~~~ 158 (462)
T TIGR01130 82 FRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDD---VVVIGFFKDLDSELNDTFLSVAEKLRDV 158 (462)
T ss_pred EeCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCC---cEEEEEECCCCcHHHHHHHHHHHHhhhc
Confidence 999976 67999999999999999999999999999999999998844 466666643 1 3688888888876
Q ss_pred hHhHHhhccchhhhhhcCCCCCCeEEEEcCCCCCc--ccccCCC--ChHHHHHHHHhhCCCCccccChhhHHhhhcCCCc
Q 013240 197 AWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEH--NIFYGPF--DEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRK 272 (447)
Q Consensus 197 ~~f~~~~~~~~~~~~~~~i~~~P~l~~~~~~~~~~--~~~~g~~--~~~~i~~fI~~~~~p~~~~l~~~~~~~~~~~~~~ 272 (447)
..+ ++...+..+...++.. .+.++++++..... ..|.|.. +.+.|.+||..+.+|.+.++++.++..++..+ +
T Consensus 159 ~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~ 235 (462)
T TIGR01130 159 YFF-FAHSSDVAAFAKLGAF-PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESG-P 235 (462)
T ss_pred cce-EEecCCHHHHhhcCCC-CCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCC-C
Confidence 553 2323345666777765 37777777654433 3567765 45899999999999999999999999888776 5
Q ss_pred EEEEEE-eCCChhhHHHHHHHHHHHHHhCC--CceEEEEeccchHhHHhhcCCCCCCCCceEEEEeCCc-cceecCCCCC
Q 013240 273 IVLAIV-EDETEEKSQKLVTTLKAAASANR--ELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE-NYLTVIGSES 348 (447)
Q Consensus 273 ~vl~~~-~~~~~~~~~~~~~~l~~~a~~~~--~~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~~~-~y~~~~g~~~ 348 (447)
.+++++ .+.+....+++.+.++.+|++++ .+.|+++|+.+++.+++.+|+ ...++|+++|++.++ ..+.+.+
T Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~-~~~~~P~~vi~~~~~~~~y~~~~--- 311 (462)
T TIGR01130 236 LVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGL-KAEKFPAVAIQDLEGNKKYPMDQ--- 311 (462)
T ss_pred ceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHHcCC-CccCCceEEEEeCCcccccCCCc---
Confidence 444444 33333335788899999999998 499999999999999999999 556799999999874 2233332
Q ss_pred CCcccchhHHHHHHHHHhcCccccccccCC--c-ccccceEEeeccee
Q 013240 349 IDEEDQGSQISRFLEGYREGRTEQKKVAGP--S-IFGFVNSLIGIRSV 393 (447)
Q Consensus 349 ~~~~~~~~~i~~Fl~~~~~gkl~~~~ks~p--~-~~~~~~~~v~~~~~ 393 (447)
++.+.++|.+|++++++|++++.++|+| + ..+.+..++|.+.-
T Consensus 312 --~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~ 357 (462)
T TIGR01130 312 --EEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFD 357 (462)
T ss_pred --CCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHH
Confidence 2577899999999999999999999984 3 35677787766643
No 4
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=100.00 E-value=9.6e-36 Score=263.80 Aligned_cols=320 Identities=21% Similarity=0.356 Sum_probs=255.7
Q ss_pred eChhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCC--CCeEEEEEeCccchhhhhhCCCccccEEEEEe
Q 013240 48 LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLK--EPIVIAKVDADKYSRLASKQEIDAFPTLKIFM 125 (447)
Q Consensus 48 l~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~--~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~ 125 (447)
++..|++.++..+..+||.|||+||+.++.+.|.|+++|..++... .++..|.|||+.+..++.+|.|..|||+.+|+
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 4678999999999999999999999999999999999999887643 47999999999999999999999999999999
Q ss_pred CCeeE--EecCCCCHHHHHHHHHHhcCCCceecCChhHHHHHHHhcCCcccEEEeecCC-h----hHHHHHHHHhhhhhH
Q 013240 126 HGIPT--EYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-E----SVMSNLALKYKKKAW 198 (447)
Q Consensus 126 ~g~~~--~y~g~~~~~~i~~fi~~~~~~~v~~i~s~~~~~~~l~~~~~~~~~vi~f~~~-~----~~~~~~a~~~~~~~~ 198 (447)
+|... +|+|.|+.+.+.+|+++++..++.++.+.++++...... +-.+|+++.. + ..++.+|.-+++.+.
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~---K~~vIgyF~~kdspey~~~~kva~~lr~dc~ 157 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPS---KRTVIGYFPSKDSPEYDNLRKVASLLRDDCV 157 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccc---cceEEEEeccCCCchHHHHHHHHHHHhhccE
Confidence 99765 599999999999999999999999988877776654422 2478887752 2 368889999999887
Q ss_pred hHHhhccchhhhhhcCCCCCCeEEEEcCCCCC-cccccCCCC-hHHHHHHHHhhCCCCccccChhhHHhhhcCCCcEEEE
Q 013240 199 FAVAKDFSEDTMVLYDFDKVPALVALQPSYNE-HNIFYGPFD-EEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLA 276 (447)
Q Consensus 199 f~~~~~~~~~~~~~~~i~~~P~l~~~~~~~~~-~~~~~g~~~-~~~i~~fI~~~~~p~~~~l~~~~~~~~~~~~~~~vl~ 276 (447)
|.+.. + ++.....-.+.+ +++++++... ...|.|.++ .+.+..||.+.+.|+|+++|-+|.+++...+.|++++
T Consensus 158 f~V~~--g-D~~~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EELtEEGlPflIL 233 (375)
T KOG0912|consen 158 FLVGF--G-DLLKPHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREITFENAEELTEEGLPFLIL 233 (375)
T ss_pred EEeec--c-ccccCCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhhhccHHHHhhcCCceEEE
Confidence 76652 1 222222222222 6777775433 336999876 7899999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHhHHhhcCCCCCCCCceEEEEeCCccceecCCCCCCCcccch
Q 013240 277 IVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQG 355 (447)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~~~~y~~~~g~~~~~~~~~~ 355 (447)
|...++.+..+.+...+.+--..-+. +.|...|+..+..-+..+|- +..++|.++|=.....|.... +++...+
T Consensus 234 f~~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgK-s~~DLPviaIDsF~Hmylfp~----f~di~~p 308 (375)
T KOG0912|consen 234 FRKKDDKESEKIFKNAIARELDDETLAINFLTADGKVFKHPLRHLGK-SPDDLPVIAIDSFRHMYLFPD----FNDINIP 308 (375)
T ss_pred EecCCcccHHHHHHHHHHHHhhhhhhccceeecCcceecchHHHhCC-CcccCcEEEeeccceeeecCc----hhhhcCc
Confidence 98766655555555544433222333 88999999998888888998 789999999888876665443 3555678
Q ss_pred hHHHHHHHHHhcCccccccccCCc
Q 013240 356 SQISRFLEGYREGRTEQKKVAGPS 379 (447)
Q Consensus 356 ~~i~~Fl~~~~~gkl~~~~ks~p~ 379 (447)
+.|.+|+.|+.+||+....-.+|.
T Consensus 309 GkLkqFv~DL~sgklHrefH~~~d 332 (375)
T KOG0912|consen 309 GKLKQFVADLHSGKLHREFHEGPD 332 (375)
T ss_pred cHHHHHHHHHhCchhhHHhhcCCC
Confidence 899999999999999986655553
No 5
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=100.00 E-value=8e-36 Score=263.63 Aligned_cols=316 Identities=23% Similarity=0.397 Sum_probs=238.4
Q ss_pred CCeEEeChhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEE
Q 013240 43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (447)
Q Consensus 43 ~~v~~l~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~ 122 (447)
..|.+|+++-.+. +..+.|+|.||||||+||++++|.|.++.-+|+..+.+|.++++||+..+.++.++||+||||+.
T Consensus 28 t~VeDLddkFkdn--kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk 105 (468)
T KOG4277|consen 28 TAVEDLDDKFKDN--KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIK 105 (468)
T ss_pred hhhhhhhHHhhhc--ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEE
Confidence 4677777553332 45689999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeeEEecCCCCHHHHHHHHHHhcCCCceecCChh-HHHHHHHhcCCcccEEEeecCCh-h---HHHHHHHHhhhhh
Q 013240 123 IFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDA-EVSDFVENAGTFFPLFIGFGLDE-S---VMSNLALKYKKKA 197 (447)
Q Consensus 123 ~~~~g~~~~y~g~~~~~~i~~fi~~~~~~~v~~i~s~~-~~~~~l~~~~~~~~~vi~f~~~~-~---~~~~~a~~~~~~~ 197 (447)
+|++|..+.|+|+|+.+.|++|+.+-..+-+..+++.+ ++++....+. |.++.|.-.+ + .|-..|.......
T Consensus 106 ~~kgd~a~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq---~ffVf~Gtge~PL~d~fidAASe~~~~a 182 (468)
T KOG4277|consen 106 FFKGDHAIDYRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQ---PFFVFFGTGEGPLFDAFIDAASEKFSVA 182 (468)
T ss_pred EecCCeeeecCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccC---ceEEEEeCCCCcHHHHHHHHhhhheeee
Confidence 99999999999999999999999999999888887532 2233333333 5677666332 2 3444555444444
Q ss_pred HhHHhhccchhhhhhcCCC-CCCeEEEEcCCCCCcccccCCCChHHHHHHHHhhCCCCccccChhhHHhhhcCCCcEEEE
Q 013240 198 WFAVAKDFSEDTMVLYDFD-KVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLA 276 (447)
Q Consensus 198 ~f~~~~~~~~~~~~~~~i~-~~P~l~~~~~~~~~~~~~~g~~~~~~i~~fI~~~~~p~~~~l~~~~~~~~~~~~~~~vl~ 276 (447)
+|..+ +++++..++-. ..|++.+|++ +......+.+.+.|.+||...++|.+-..+..++.++...++.++++
T Consensus 183 ~FfSa---seeVaPe~~~~kempaV~VFKD---etf~i~de~dd~dLseWinRERf~~fLa~dgflL~EiG~sGKLVaLa 256 (468)
T KOG4277|consen 183 RFFSA---SEEVAPEENDAKEMPAVAVFKD---ETFEIEDEGDDEDLSEWINRERFPGFLAADGFLLAEIGASGKLVALA 256 (468)
T ss_pred eeecc---ccccCCcccchhhccceEEEcc---ceeEEEecCchhHHHHHHhHhhccchhhcccchHHHhCcCCceEEEE
Confidence 55444 56666665543 4599999985 33333445567789999999999999999999999999888888877
Q ss_pred EEeCC----ChhhHHHHHHHHHHHHHhCCC-------ceEEEEeccchHhHHhhcCCCCCCCCceEEEEeCC-ccceecC
Q 013240 277 IVEDE----TEEKSQKLVTTLKAAASANRE-------LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN-ENYLTVI 344 (447)
Q Consensus 277 ~~~~~----~~~~~~~~~~~l~~~a~~~~~-------~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~~-~~y~~~~ 344 (447)
+.+.. +.....++.+..+++|+.+++ +.|+|+|+++ ++..+.+ ..-..|.++|++.. ..|+.-.
T Consensus 257 VidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD---~~nqilM-~als~P~l~i~NtsnqeYfLse 332 (468)
T KOG4277|consen 257 VIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGND---LANQILM-AALSEPHLFIFNTSNQEYFLSE 332 (468)
T ss_pred EeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhH---HHHHHHH-HhhcCCeEEEEecCchheeecc
Confidence 76532 344567777888888887553 8999999965 5555555 34668999999995 4565432
Q ss_pred CCCCCCcccchhHHHHHHHHHhcCcccccccc
Q 013240 345 GSESIDEEDQGSQISRFLEGYREGRTEQKKVA 376 (447)
Q Consensus 345 g~~~~~~~~~~~~i~~Fl~~~~~gkl~~~~ks 376 (447)
... .-.|-+.|.+|+++-..|-....+..
T Consensus 333 ~d~---qikniedilqFientsegI~d~TieA 361 (468)
T KOG4277|consen 333 DDP---QIKNIEDILQFIENTSEGIDDETIEA 361 (468)
T ss_pred CCh---hhhhHHHHHHHHhcccccccccceee
Confidence 111 12366789999999777776666654
No 6
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=100.00 E-value=5.2e-31 Score=238.91 Aligned_cols=348 Identities=23% Similarity=0.349 Sum_probs=230.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCcccccccCCCCeEEeChhhHHHhHccCCeEEEEEECCCChhhhhhhH-------H
Q 013240 9 IWILLCLLLLTGRGMMLLTGRGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAP-------Q 81 (447)
Q Consensus 9 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p-------~ 81 (447)
.|+++++|+++.+..+++...+.-.+ .+..-.+|++||++||.+++++.+..+|+||.|--. .+.... .
T Consensus 3 ~~l~la~l~L~~~~~~~~aeegLefP---~YDGkDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~-dk~~qkq~~m~E~~ 78 (383)
T PF01216_consen 3 TWLLLAGLYLSVLGCCCRAEEGLEFP---EYDGKDRVIDLNEKNFKRALKKYDVLVLYYHEPVES-DKVSQKQFQMTELV 78 (383)
T ss_dssp -----------------------SSS---S-SSS--CEEE-TTTHHHHHHH-SEEEEEEE--STS-SHHHHHHHHHHHHH
T ss_pred ceeeHHHHHHHHhccccchhhccCCc---cCCCccceEEcchhHHHHHHHhhcEEEEEEecCCcc-CHHHHHHHHHHHHH
Confidence 34444444444433333333332222 466678999999999999999999999999988632 223322 3
Q ss_pred HHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCCeeEEecCCCCHHHHHHHHHHhcCCCceecCChhH
Q 013240 82 LDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAE 161 (447)
Q Consensus 82 ~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~i~~fi~~~~~~~v~~i~s~~~ 161 (447)
++-+|+.+... .|.||.||..++..+|+++|+...+++++|.+|..++|+|.++++-|++|+...+..+|..|++..+
T Consensus 79 LELaAQVlE~~--gigfg~VD~~Kd~klAKKLgv~E~~SiyVfkd~~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e 156 (383)
T PF01216_consen 79 LELAAQVLEDK--GIGFGMVDSKKDAKLAKKLGVEEEGSIYVFKDGEVIEYDGERSADTLVEFLLDLLEDPVEIINNKHE 156 (383)
T ss_dssp HHHHHHHCGGC--TEEEEEEETTTTHHHHHHHT--STTEEEEEETTEEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHH
T ss_pred HHHHHHhcccc--CcceEEeccHHHHHHHHhcCccccCcEEEEECCcEEEecCccCHHHHHHHHHHhcccchhhhcChhh
Confidence 45556777554 4999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcccEEEeecCCh-h----HHHHHHHHhhhhhHhHHhhccchhhhhhcCCCCCCeEEEEcCCCCCcccccC
Q 013240 162 VSDFVENAGTFFPLFIGFGLDE-S----VMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYG 236 (447)
Q Consensus 162 ~~~~l~~~~~~~~~vi~f~~~~-~----~~~~~a~~~~~~~~f~~~~~~~~~~~~~~~i~~~P~l~~~~~~~~~~~~~~g 236 (447)
++.|-.-.+. +.+|||++.. + .|.+.|..|.....|..+ ++..++++.+++ ...+-+|+|..+.+....|
T Consensus 157 ~~~Fe~ied~--~klIGyFk~~~s~~yk~FeeAAe~F~p~IkFfAt--fd~~vAk~L~lK-~nev~fyepF~~~pi~ip~ 231 (383)
T PF01216_consen 157 LKAFERIEDD--IKLIGYFKSEDSEHYKEFEEAAEHFQPYIKFFAT--FDKKVAKKLGLK-LNEVDFYEPFMDEPITIPG 231 (383)
T ss_dssp HHHHHH--SS---EEEEE-SSTTSHHHHHHHHHHHHCTTTSEEEEE---SHHHHHHHT-S-TT-EEEE-TTSSSEEEESS
T ss_pred hhhhhhcccc--eeEEEEeCCCCcHHHHHHHHHHHhhcCceeEEEE--ecchhhhhcCcc-ccceeeeccccCCCccCCC
Confidence 9888764433 6899988763 2 577789999988877665 578899999986 7888999998888888877
Q ss_pred -CCChHHHHHHHHhhCCCCccccChhhHHh-hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC---ceEEEEecc
Q 013240 237 -PFDEEFLEEFIKQNFLPLSVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIK 311 (447)
Q Consensus 237 -~~~~~~i~~fI~~~~~p~~~~l~~~~~~~-~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~f~~vd~~ 311 (447)
+.+...|.+||+.|..|.++.+++.+... ..+.-....+..|...+++.--++.++|+++|+.+.+ +.++|+|..
T Consensus 232 ~p~~e~e~~~fi~~h~rptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD 311 (383)
T PF01216_consen 232 KPYTEEELVEFIEEHKRPTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPD 311 (383)
T ss_dssp SS--HHHHHHHHHHT-S-SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GG
T ss_pred CCCCHHHHHHHHHHhchhHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCC
Confidence 56788999999999999999999877544 4433334444445456667778999999999998875 999999999
Q ss_pred chHh----HHhhcCCCCCCCCceEEEEeCCc---cceecCCCCCCCcccchhHHHHHHHHHhcCcccc
Q 013240 312 QFAD----FADTFEANKKSKLPKMVVWDGNE---NYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQ 372 (447)
Q Consensus 312 ~~~~----~~~~~~i~~~~~~P~vvi~~~~~---~y~~~~g~~~~~~~~~~~~i~~Fl~~~~~gkl~~ 372 (447)
++|- |-+.|||+ -..|++.+++... .+.-+.+ -++..|.+.+..|++++++|++..
T Consensus 312 ~fPllv~yWE~tF~Id--l~~PqIGvVnvtdadsvW~dm~d---~~d~pt~~~LedWieDVlsg~i~~ 374 (383)
T PF01216_consen 312 DFPLLVPYWEKTFGID--LSRPQIGVVNVTDADSVWMDMDD---DDDLPTAEELEDWIEDVLSGKINT 374 (383)
T ss_dssp G-HHHHHHHHHHHTT---TTS-EEEEEETTTSEEEEC-STT---TSS---HHHHHHHHHHHHCTCCTB
T ss_pred CCchhHHHHHhhcCcc--ccCCceeEEeccccccchhccCC---cccCCcHHHHHHHHHHHhcCCCCC
Confidence 8855 55778994 4469999999953 4444443 234568999999999999999876
No 7
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.90 E-value=2.4e-23 Score=166.75 Aligned_cols=104 Identities=19% Similarity=0.435 Sum_probs=94.1
Q ss_pred ccCCCCeEEeChhhHHHh---HccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhh-hhCC
Q 013240 39 FKIDGKVIELDESNFDSA---ISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA-SKQE 114 (447)
Q Consensus 39 ~~~~~~v~~l~~~~f~~~---~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~-~~~~ 114 (447)
+...++|++|+++||+++ ++++++++|.||||||+||+.+.|.|+++|+.+++ .+.|++|||+.+.++| ++|+
T Consensus 5 ~~~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~---~v~~~~Vd~d~~~~l~~~~~~ 81 (113)
T cd03006 5 FSQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD---QVLFVAINCWWPQGKCRKQKH 81 (113)
T ss_pred cCCCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEECCCChHHHHHhcC
Confidence 344578999999999997 57889999999999999999999999999999864 3999999999999999 5899
Q ss_pred CccccEEEEEeCCe-eEEecCCCCHHHHHHHH
Q 013240 115 IDAFPTLKIFMHGI-PTEYYGPRKAELLVRYL 145 (447)
Q Consensus 115 i~~~Ptl~~~~~g~-~~~y~g~~~~~~i~~fi 145 (447)
|.++||+++|++|. +..|.|.++.+.|+.|+
T Consensus 82 I~~~PTl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 82 FFYFPVIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred CcccCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence 99999999999986 45699999999999874
No 8
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.88 E-value=2.1e-22 Score=159.93 Aligned_cols=99 Identities=34% Similarity=0.683 Sum_probs=92.0
Q ss_pred CeEEeChhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEE
Q 013240 44 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123 (447)
Q Consensus 44 ~v~~l~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~ 123 (447)
+++.||.++|++.+++.++++|.||++||++|+.+.|.|+++++.+++ .+.|+.|||++++++|++++|.++||+++
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG---VIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC---ceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 688999999999998889999999999999999999999999998865 39999999999999999999999999999
Q ss_pred EeCCeeE-EecCCCCHHHHHHHH
Q 013240 124 FMHGIPT-EYYGPRKAELLVRYL 145 (447)
Q Consensus 124 ~~~g~~~-~y~g~~~~~~i~~fi 145 (447)
|++|+.. .|.|.++.+.|.+|+
T Consensus 79 ~~~g~~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 79 FPSGMNPEKYYGDRSKESLVKFA 101 (101)
T ss_pred EcCCCCcccCCCCCCHHHHHhhC
Confidence 9999755 599999999999874
No 9
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.87 E-value=9e-22 Score=158.27 Aligned_cols=103 Identities=36% Similarity=0.671 Sum_probs=93.6
Q ss_pred CCeEEeChhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCC---CCeEEEEEeCccchhhhhhCCCcccc
Q 013240 43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLK---EPIVIAKVDADKYSRLASKQEIDAFP 119 (447)
Q Consensus 43 ~~v~~l~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~---~~v~~~~Vd~~~~~~l~~~~~i~~~P 119 (447)
++|+.|++++|++.++.+++++|.||+|||++|+.+.|.|.++++.+++.. +.+.++.|||+.++++|++|+|+++|
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 1 SEIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred CceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 368899999999999888999999999999999999999999999876421 24999999999999999999999999
Q ss_pred EEEEEeCCee--EEecCCCCHHHHHHHH
Q 013240 120 TLKIFMHGIP--TEYYGPRKAELLVRYL 145 (447)
Q Consensus 120 tl~~~~~g~~--~~y~g~~~~~~i~~fi 145 (447)
|+++|++|+. ..|.|.++.++|.+|+
T Consensus 81 tl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999999973 4699999999999985
No 10
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.87 E-value=8.3e-22 Score=156.55 Aligned_cols=98 Identities=29% Similarity=0.498 Sum_probs=88.8
Q ss_pred CeEEeChhhHHHhHccCCeEEEEEEC--CCCh---hhhhhhHHHHHHHHHhhcCCCCeEEEEEeC-----ccchhhhhhC
Q 013240 44 KVIELDESNFDSAISSFDYILVDFYA--PWCG---HCKRLAPQLDEAAPILAKLKEPIVIAKVDA-----DKYSRLASKQ 113 (447)
Q Consensus 44 ~v~~l~~~~f~~~~~~~~~~lV~f~~--~~C~---~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~-----~~~~~l~~~~ 113 (447)
.++.||+.||++.+++++.+||.||| |||+ ||+.++|+|.+++.. |.+|+||| .++.+||++|
T Consensus 2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~-------v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD-------LLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc-------eEEEEEecccccchhhHHHHHHh
Confidence 57899999999999999999999999 9999 888888888887642 88999999 5688999999
Q ss_pred CCc--cccEEEEEeCCe---eEEecCC-CCHHHHHHHHHHh
Q 013240 114 EID--AFPTLKIFMHGI---PTEYYGP-RKAELLVRYLKKF 148 (447)
Q Consensus 114 ~i~--~~Ptl~~~~~g~---~~~y~g~-~~~~~i~~fi~~~ 148 (447)
+|+ +||||++|++|. +..|.|+ |+.++|++|+.++
T Consensus 75 ~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 75 KLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999 999999999984 5789997 9999999999875
No 11
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.86 E-value=5.3e-21 Score=152.42 Aligned_cols=101 Identities=37% Similarity=0.679 Sum_probs=95.0
Q ss_pred eEEeChhhHHHhHcc-CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEE
Q 013240 45 VIELDESNFDSAISS-FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123 (447)
Q Consensus 45 v~~l~~~~f~~~~~~-~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~ 123 (447)
|..+|+++|++.+.+ +++++|+||++||++|+.+.|.|.++++.+.+ ++.|+.|||++++++|++|+|.++|++++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 77 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDCDENKELCKKYGVKSVPTIIF 77 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTSHHHHHHTTCSSSSEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhhhccchhhhccCCCCCCEEEE
Confidence 578999999999976 89999999999999999999999999998875 49999999999999999999999999999
Q ss_pred EeCCeeE-EecCCCCHHHHHHHHHHh
Q 013240 124 FMHGIPT-EYYGPRKAELLVRYLKKF 148 (447)
Q Consensus 124 ~~~g~~~-~y~g~~~~~~i~~fi~~~ 148 (447)
|++|+.. .|.|.++.+.|.+|++++
T Consensus 78 ~~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 78 FKNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred EECCcEEEEEECCCCHHHHHHHHHcC
Confidence 9999876 599999999999999875
No 12
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.86 E-value=7.4e-21 Score=170.23 Aligned_cols=106 Identities=30% Similarity=0.574 Sum_probs=96.3
Q ss_pred CCCeEEeChhhHHHhHcc-----CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCc
Q 013240 42 DGKVIELDESNFDSAISS-----FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID 116 (447)
Q Consensus 42 ~~~v~~l~~~~f~~~~~~-----~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~ 116 (447)
++.|++||++||++.+.. .++++|+||+|||++|+.+.|.|+++++.+++ .+.++.|||+.++++|++|+|+
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~---~v~~~~VD~~~~~~l~~~~~I~ 105 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG---QVNVADLDATRALNLAKRFAIK 105 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC---CeEEEEecCcccHHHHHHcCCC
Confidence 467999999999998853 47999999999999999999999999998864 3999999999999999999999
Q ss_pred cccEEEEEeCCeeEEe-cCCCCHHHHHHHHHHhcC
Q 013240 117 AFPTLKIFMHGIPTEY-YGPRKAELLVRYLKKFVA 150 (447)
Q Consensus 117 ~~Ptl~~~~~g~~~~y-~g~~~~~~i~~fi~~~~~ 150 (447)
++||+++|.+|+...| .|.++.++|.+|+.+...
T Consensus 106 ~~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 106 GYPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred cCCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 9999999999998875 577999999999987754
No 13
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.85 E-value=7.7e-21 Score=150.96 Aligned_cols=101 Identities=32% Similarity=0.611 Sum_probs=91.2
Q ss_pred CCeEEeChhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEE
Q 013240 43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (447)
Q Consensus 43 ~~v~~l~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~ 122 (447)
++|+.|+.++|++.+++ .++|.|||+||++|+.+.|.|.++++.++. ..+.++.|||++++.+|++|+|.++||++
T Consensus 1 ~~v~~l~~~~f~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 1 SNVVELTDSNWTLVLEG--EWMIEFYAPWCPACQQLQPEWEEFADWSDD--LGINVAKVDVTQEPGLSGRFFVTALPTIY 76 (101)
T ss_pred CceEEcChhhHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHhhcc--CCeEEEEEEccCCHhHHHHcCCcccCEEE
Confidence 36899999999998854 389999999999999999999999987653 24999999999999999999999999999
Q ss_pred EEeCCeeEEecCCCCHHHHHHHHHH
Q 013240 123 IFMHGIPTEYYGPRKAELLVRYLKK 147 (447)
Q Consensus 123 ~~~~g~~~~y~g~~~~~~i~~fi~~ 147 (447)
+|.+|....|.|.++.++|.+|+.+
T Consensus 77 ~~~~g~~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 77 HAKDGVFRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EeCCCCEEEecCCCCHHHHHHHHhC
Confidence 9999987779999999999999863
No 14
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.85 E-value=1.1e-20 Score=152.31 Aligned_cols=110 Identities=23% Similarity=0.332 Sum_probs=93.5
Q ss_pred ccCCCCeEEeChhhHHHhHccCC-eEEEEEECCCCh--hhh--hhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhC
Q 013240 39 FKIDGKVIELDESNFDSAISSFD-YILVDFYAPWCG--HCK--RLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQ 113 (447)
Q Consensus 39 ~~~~~~v~~l~~~~f~~~~~~~~-~~lV~f~~~~C~--~C~--~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~ 113 (447)
+.....|+.||++||++.+.+++ ++++.|+++||+ ||+ ..+|.+.++|.++-. ..++.|++|||+++++||++|
T Consensus 5 ~~~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~-~~~v~~~kVD~d~~~~La~~~ 83 (120)
T cd03065 5 YDGKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLE-DKGIGFGLVDSKKDAKVAKKL 83 (120)
T ss_pred cCCCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhh-cCCCEEEEEeCCCCHHHHHHc
Confidence 34457899999999999986554 777777788886 499 788888888776522 124999999999999999999
Q ss_pred CCccccEEEEEeCCeeEEecCCCCHHHHHHHHHHhc
Q 013240 114 EIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149 (447)
Q Consensus 114 ~i~~~Ptl~~~~~g~~~~y~g~~~~~~i~~fi~~~~ 149 (447)
+|+++||+++|++|+.+.|.|.++.+.|.+|+.++.
T Consensus 84 ~I~~iPTl~lfk~G~~v~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 84 GLDEEDSIYVFKDDEVIEYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred CCccccEEEEEECCEEEEeeCCCCHHHHHHHHHHHh
Confidence 999999999999999888999999999999999764
No 15
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.85 E-value=7.4e-21 Score=151.91 Aligned_cols=99 Identities=33% Similarity=0.695 Sum_probs=89.1
Q ss_pred CeEEeChhhHHHhH-ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEE
Q 013240 44 KVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (447)
Q Consensus 44 ~v~~l~~~~f~~~~-~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~ 122 (447)
++..|+.++|++.+ +.+++++|.||++||++|+.+.|.|+++++.+.+ .+.|+.|||++++++|++++|+++||++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG---KVKVGSVDCQKYESLCQQANIRAYPTIR 78 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CcEEEEEECCchHHHHHHcCCCcccEEE
Confidence 57889999999987 4567999999999999999999999999998754 3999999999999999999999999999
Q ss_pred EEeCC-eeE-EecCCCC-HHHHHHHH
Q 013240 123 IFMHG-IPT-EYYGPRK-AELLVRYL 145 (447)
Q Consensus 123 ~~~~g-~~~-~y~g~~~-~~~i~~fi 145 (447)
+|.+| +.. .|.|.++ .++|.+|+
T Consensus 79 ~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 79 LYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEcCCCCCceEccCCCCCHHHHHhhC
Confidence 99997 544 5999987 99999885
No 16
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.83 E-value=4.3e-19 Score=157.14 Aligned_cols=172 Identities=24% Similarity=0.433 Sum_probs=148.1
Q ss_pred hHHHHHHHHhhhhhHhHHhhccchhhhhhcCCCCCCeEEEEcCCCCCcccccCC-CChHHHHHHHHhhCCCCccccChhh
Q 013240 184 SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGP-FDEEFLEEFIKQNFLPLSVPINQDT 262 (447)
Q Consensus 184 ~~~~~~a~~~~~~~~f~~~~~~~~~~~~~~~i~~~P~l~~~~~~~~~~~~~~g~-~~~~~i~~fI~~~~~p~~~~l~~~~ 262 (447)
..|.++|..+++.+.|+.+ .+.++++.+++.. |++++|++.++....|.|. ++.+.|.+||..+.+|++.++|+.+
T Consensus 10 ~~f~~~A~~~~~~~~F~~~--~~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~t~~n 86 (184)
T PF13848_consen 10 EIFEEAAEKLKGDYQFGVT--FNEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPELTPEN 86 (184)
T ss_dssp HHHHHHHHHHTTTSEEEEE--E-HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEEESTTH
T ss_pred HHHHHHHHhCcCCcEEEEE--cHHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccccccccchhh
Confidence 3688999999988777766 3678899999997 9999999977778899998 8999999999999999999999999
Q ss_pred HHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHhHHhhcCCCCCCCCceEEEEeCC-ccc
Q 013240 263 LNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN-ENY 340 (447)
Q Consensus 263 ~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~~-~~y 340 (447)
+..+...+.+.+++++.+.+.+..+.+.+.++.+|+.+++ +.|+|+|+..++++++.+|+ +..++|+++|++.. ++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i-~~~~~P~~vi~~~~~~~~ 165 (184)
T PF13848_consen 87 FEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGI-DEDDLPALVIFDSNKGKY 165 (184)
T ss_dssp HHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTT-TTSSSSEEEEEETTTSEE
T ss_pred HHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCC-CCccCCEEEEEECCCCcE
Confidence 9999999888666666656677888999999999999998 99999999999999999999 67899999999974 455
Q ss_pred eecCCCCCCCcccchhHHHHHHHH
Q 013240 341 LTVIGSESIDEEDQGSQISRFLEG 364 (447)
Q Consensus 341 ~~~~g~~~~~~~~~~~~i~~Fl~~ 364 (447)
+++. +++++.++|.+|+++
T Consensus 166 ~~~~-----~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 166 YYLP-----EGEITPESIEKFLND 184 (184)
T ss_dssp EE-------SSCGCHHHHHHHHHH
T ss_pred EcCC-----CCCCCHHHHHHHhcC
Confidence 4432 457889999999985
No 17
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.8e-19 Score=176.05 Aligned_cols=206 Identities=30% Similarity=0.462 Sum_probs=154.6
Q ss_pred CCeEEeCh-hhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEE
Q 013240 43 GKVIELDE-SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL 121 (447)
Q Consensus 43 ~~v~~l~~-~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl 121 (447)
+.+..++. ..+...+...++++|.||+|||+||+++.|.|.+++..+++ .+.++.|||+.++++|++|+|.++||+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~---~~~~~~vd~~~~~~~~~~y~i~gfPtl 105 (383)
T KOG0191|consen 29 GVVSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG---KVKIGAVDCDEHKDLCEKYGIQGFPTL 105 (383)
T ss_pred cchhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcC---ceEEEEeCchhhHHHHHhcCCccCcEE
Confidence 34444444 44455568889999999999999999999999999999987 499999999999999999999999999
Q ss_pred EEEeCC-eeEEecCCCCHHHHHHHHHHhcCCCceecCC-------hhHHHHHHHhcCCcccEEEeecC-Ch-------hH
Q 013240 122 KIFMHG-IPTEYYGPRKAELLVRYLKKFVAPDVSILNS-------DAEVSDFVENAGTFFPLFIGFGL-DE-------SV 185 (447)
Q Consensus 122 ~~~~~g-~~~~y~g~~~~~~i~~fi~~~~~~~v~~i~s-------~~~~~~~l~~~~~~~~~vi~f~~-~~-------~~ 185 (447)
.+|.+| .++.|.|.++.+.+.+|+.+.+.+.+..... ..++.......+. .+++.|+. .. +.
T Consensus 106 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~--~~lv~f~aPwc~~ck~l~~~ 183 (383)
T KOG0191|consen 106 KVFRPGKKPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDA--DWLVEFYAPWCGHCKKLAPE 183 (383)
T ss_pred EEEcCCCceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCc--ceEEEEeccccHHhhhcChH
Confidence 999999 6778999999999999999888765443322 2245554444443 46776643 23 34
Q ss_pred HHHHHHHhhh--hhHhHHh-hccchhhhhhcCCCCCCeEEEEcCCCCCcccccCCCChHHHHHHHHhhCCC
Q 013240 186 MSNLALKYKK--KAWFAVA-KDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLP 253 (447)
Q Consensus 186 ~~~~a~~~~~--~~~f~~~-~~~~~~~~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~fI~~~~~p 253 (447)
+..++..+.. ....+.. .+....+...+++..+|++.+|+++......+.+..+.+.|.+|+....-+
T Consensus 184 ~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 184 WEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred HHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcCC
Confidence 5666665543 1111111 112456788899999999999988755355667889999999999988655
No 18
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.82 E-value=1.2e-19 Score=144.33 Aligned_cols=101 Identities=39% Similarity=0.715 Sum_probs=91.2
Q ss_pred CeEEeChhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEE
Q 013240 44 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123 (447)
Q Consensus 44 ~v~~l~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~ 123 (447)
.++.|++++|++.++++ +++|.||++||++|+.+.|.|.++++.+++....+.++.|||+.+..+|++|+|.++|++++
T Consensus 1 ~~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 1 GVLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred CeeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 36789999999999765 69999999999999999999999999987633469999999999999999999999999999
Q ss_pred EeCCeeE-EecCCCCHHHHHHHH
Q 013240 124 FMHGIPT-EYYGPRKAELLVRYL 145 (447)
Q Consensus 124 ~~~g~~~-~y~g~~~~~~i~~fi 145 (447)
|++|+.. .|.|.++.+.|.+|+
T Consensus 80 ~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCCeeeEeeCCCCHHHHHhhC
Confidence 9999765 599999999998875
No 19
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1e-19 Score=148.04 Aligned_cols=105 Identities=36% Similarity=0.558 Sum_probs=96.6
Q ss_pred CCeEEeChhhHHHhH-ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEE
Q 013240 43 GKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL 121 (447)
Q Consensus 43 ~~v~~l~~~~f~~~~-~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl 121 (447)
..+-.++..+|++.+ ++..|++|+|||+||++|+.+.|.+++++.++++ ++.+++||.+++.+|+.+|+|..+||+
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g---~~k~~kvdtD~~~ela~~Y~I~avPtv 119 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG---KFKLYKVDTDEHPELAEDYEISAVPTV 119 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC---eEEEEEEccccccchHhhcceeeeeEE
Confidence 466777899999866 7889999999999999999999999999998865 499999999999999999999999999
Q ss_pred EEEeCCeeEE-ecCCCCHHHHHHHHHHhcC
Q 013240 122 KIFMHGIPTE-YYGPRKAELLVRYLKKFVA 150 (447)
Q Consensus 122 ~~~~~g~~~~-y~g~~~~~~i~~fi~~~~~ 150 (447)
++|++|+..+ +-|....+.|.+|+++.+.
T Consensus 120 lvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 120 LVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 9999999885 8999999999999998764
No 20
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.82 E-value=1.3e-19 Score=146.05 Aligned_cols=100 Identities=40% Similarity=0.710 Sum_probs=89.7
Q ss_pred CeEEeChhhHHHhHc-cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc--chhhhhhCCCccccE
Q 013240 44 KVIELDESNFDSAIS-SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--YSRLASKQEIDAFPT 120 (447)
Q Consensus 44 ~v~~l~~~~f~~~~~-~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~--~~~l~~~~~i~~~Pt 120 (447)
.|+.|++++|++.+. .+++++|.||++||++|+++.|.|.++++.+.+ .+.++.|||+. ++++|++|+|.++|+
T Consensus 1 ~v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~---~~~~~~v~~~~~~~~~~~~~~~i~~~Pt 77 (109)
T cd03002 1 PVYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG---LVQVAAVDCDEDKNKPLCGKYGVQGFPT 77 (109)
T ss_pred CeEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC---CceEEEEecCccccHHHHHHcCCCcCCE
Confidence 378899999999984 457899999999999999999999999998764 38899999998 899999999999999
Q ss_pred EEEEeCCe------eEEecCCCCHHHHHHHHH
Q 013240 121 LKIFMHGI------PTEYYGPRKAELLVRYLK 146 (447)
Q Consensus 121 l~~~~~g~------~~~y~g~~~~~~i~~fi~ 146 (447)
+++|.+|. ...|.|.++.+.|.+|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 78 LKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 99999985 346999999999999973
No 21
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.81 E-value=3.4e-19 Score=142.03 Aligned_cols=99 Identities=44% Similarity=0.780 Sum_probs=89.8
Q ss_pred CeEEeChhhHHHhHcc-CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEE
Q 013240 44 KVIELDESNFDSAISS-FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (447)
Q Consensus 44 ~v~~l~~~~f~~~~~~-~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~ 122 (447)
+|..+++++|++.+.+ .++++|.||++||++|+.+.|.|.++++.+.+ .+.++.+||++++++|++++|+++|+++
T Consensus 1 ~v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~---~~~~~~id~~~~~~~~~~~~i~~~P~~~ 77 (103)
T cd03001 1 DVVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG---IVKVGAVDADVHQSLAQQYGVRGFPTIK 77 (103)
T ss_pred CeEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC---CceEEEEECcchHHHHHHCCCCccCEEE
Confidence 4788999999998844 45699999999999999999999999988764 4999999999999999999999999999
Q ss_pred EEeCC--eeEEecCCCCHHHHHHHH
Q 013240 123 IFMHG--IPTEYYGPRKAELLVRYL 145 (447)
Q Consensus 123 ~~~~g--~~~~y~g~~~~~~i~~fi 145 (447)
+|.+| ....|.|+++.++|.+|+
T Consensus 78 ~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 78 VFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EECCCCcceeecCCCCCHHHHHHHh
Confidence 99998 456799999999999997
No 22
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.81 E-value=3.6e-19 Score=143.49 Aligned_cols=101 Identities=25% Similarity=0.355 Sum_probs=89.8
Q ss_pred EEeChhhHHHhH---ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEE
Q 013240 46 IELDESNFDSAI---SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (447)
Q Consensus 46 ~~l~~~~f~~~~---~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~ 122 (447)
..++.++|.+.+ +.+++++|.||+|||++|+.+.|.|.++++.+.+. ++.++.|||+.++.+|++++|.++||++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~d~~~~l~~~~~V~~~Pt~~ 84 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL--GVGIATVNAGHERRLARKLGAHSVPAIV 84 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc--CceEEEEeccccHHHHHHcCCccCCEEE
Confidence 456888998654 36799999999999999999999999999998753 4899999999999999999999999999
Q ss_pred EEeCCeeEE-ecCCCCHHHHHHHHHHh
Q 013240 123 IFMHGIPTE-YYGPRKAELLVRYLKKF 148 (447)
Q Consensus 123 ~~~~g~~~~-y~g~~~~~~i~~fi~~~ 148 (447)
+|++|+... +.|.++.+.|.+|++++
T Consensus 85 i~~~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 85 GIINGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred EEECCEEEEEecCCCCHHHHHHHHhcC
Confidence 999998776 58999999999999763
No 23
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.8e-19 Score=160.16 Aligned_cols=106 Identities=31% Similarity=0.626 Sum_probs=99.2
Q ss_pred CCeEEeChhhHHHhH---ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCcccc
Q 013240 43 GKVIELDESNFDSAI---SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP 119 (447)
Q Consensus 43 ~~v~~l~~~~f~~~~---~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~P 119 (447)
..|.++|+.||++.+ +...|++|+||+|||++|+.+.|.+++++.+++| ++.+++|||+.++.++.+|||++.|
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G---~f~LakvN~D~~p~vAaqfgiqsIP 99 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG---KFKLAKVNCDAEPMVAAQFGVQSIP 99 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC---ceEEEEecCCcchhHHHHhCcCcCC
Confidence 459999999999988 3446999999999999999999999999998766 4999999999999999999999999
Q ss_pred EEEEEeCCeeEE-ecCCCCHHHHHHHHHHhcCC
Q 013240 120 TLKIFMHGIPTE-YYGPRKAELLVRYLKKFVAP 151 (447)
Q Consensus 120 tl~~~~~g~~~~-y~g~~~~~~i~~fi~~~~~~ 151 (447)
+++.|.+|.+++ |.|....+.|.+|+.++.++
T Consensus 100 tV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 100 TVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred eEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 999999999998 99999999999999999988
No 24
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.79 E-value=7.8e-19 Score=141.22 Aligned_cols=100 Identities=27% Similarity=0.546 Sum_probs=88.3
Q ss_pred CeEEeChhhHHHhHc---cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc-chhhhhh-CCCccc
Q 013240 44 KVIELDESNFDSAIS---SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-YSRLASK-QEIDAF 118 (447)
Q Consensus 44 ~v~~l~~~~f~~~~~---~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~-~~~l~~~-~~i~~~ 118 (447)
+|++++.++|++++. .+++++|.||++||++|+.+.|.|.++++.+++ ..+.++.|||+. +..+|++ ++|+++
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~--~~~~~~~vd~d~~~~~~~~~~~~v~~~ 79 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG--SNVKVAKFNADGEQREFAKEELQLKSF 79 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc--CCeEEEEEECCccchhhHHhhcCCCcC
Confidence 688999999999883 568999999999999999999999999998874 349999999997 6889974 999999
Q ss_pred cEEEEEeCC--eeEEecCC-CCHHHHHHHH
Q 013240 119 PTLKIFMHG--IPTEYYGP-RKAELLVRYL 145 (447)
Q Consensus 119 Ptl~~~~~g--~~~~y~g~-~~~~~i~~fi 145 (447)
||+++|.+| .+..|.|. ++.++|+.|+
T Consensus 80 Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 80 PTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999999886 35679995 8999999985
No 25
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.79 E-value=7.9e-19 Score=139.57 Aligned_cols=100 Identities=45% Similarity=0.777 Sum_probs=92.3
Q ss_pred eChhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCC
Q 013240 48 LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127 (447)
Q Consensus 48 l~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g 127 (447)
|++++|++.++++++++|+||++||++|+.+.|.|.++++.+++. ..+.++.+||++++++|++|+|.++|++++|.+|
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD-PDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC-CceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 578999999998999999999999999999999999999988753 2599999999999999999999999999999988
Q ss_pred e-eEEecCCCCHHHHHHHHHHh
Q 013240 128 I-PTEYYGPRKAELLVRYLKKF 148 (447)
Q Consensus 128 ~-~~~y~g~~~~~~i~~fi~~~ 148 (447)
. +..|.|.++.+.|..|+.++
T Consensus 80 ~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 80 KKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred CcceeecCCCCHHHHHHHHHhc
Confidence 6 67799999999999999875
No 26
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.79 E-value=3e-18 Score=144.30 Aligned_cols=92 Identities=17% Similarity=0.354 Sum_probs=81.4
Q ss_pred CCCCeEEeChhhHHHhHc--cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCcc-
Q 013240 41 IDGKVIELDESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA- 117 (447)
Q Consensus 41 ~~~~v~~l~~~~f~~~~~--~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~- 117 (447)
....+..+++++|++.+. ..++++|.||++||++|+.+.|.|+++++.+++ .++.|++|||++++++|++|+|.+
T Consensus 26 ~~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~--~~v~f~~VDvd~~~~la~~~~V~~~ 103 (152)
T cd02962 26 GPEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN--NNLKFGKIDIGRFPNVAEKFRVSTS 103 (152)
T ss_pred CCCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc--CCeEEEEEECCCCHHHHHHcCceec
Confidence 357899999999999884 346999999999999999999999999998753 249999999999999999999998
Q ss_pred -----ccEEEEEeCCeeEE-ecC
Q 013240 118 -----FPTLKIFMHGIPTE-YYG 134 (447)
Q Consensus 118 -----~Ptl~~~~~g~~~~-y~g 134 (447)
+||+++|++|+.+. +.|
T Consensus 104 ~~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 104 PLSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCcCCCCEEEEEECCEEEEEEec
Confidence 99999999998774 554
No 27
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.79 E-value=1.3e-18 Score=138.82 Aligned_cols=101 Identities=37% Similarity=0.771 Sum_probs=89.1
Q ss_pred EEeChhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEe
Q 013240 46 IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFM 125 (447)
Q Consensus 46 ~~l~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~ 125 (447)
++++ ++|+++ .++++++|.||++||++|+.+.|.|+++++.++..+..+.++.+||+.++++|++++|.++||+++|.
T Consensus 3 ~~~~-~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~ 80 (104)
T cd03000 3 LDLD-DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLK 80 (104)
T ss_pred eech-hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEc
Confidence 3443 778875 45789999999999999999999999999998754456999999999999999999999999999998
Q ss_pred CCeeEEecCCCCHHHHHHHHHHh
Q 013240 126 HGIPTEYYGPRKAELLVRYLKKF 148 (447)
Q Consensus 126 ~g~~~~y~g~~~~~~i~~fi~~~ 148 (447)
+|....|.|.++.+.|.+|+++.
T Consensus 81 ~~~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 81 GDLAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred CCCceeecCCCCHHHHHHHHHhh
Confidence 88777799999999999999864
No 28
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=6.7e-19 Score=170.40 Aligned_cols=229 Identities=20% Similarity=0.274 Sum_probs=145.4
Q ss_pred CcccccccCCCCeEEeChhhHHHhHccC-CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCc--cchhh
Q 013240 33 SEEETKFKIDGKVIELDESNFDSAISSF-DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD--KYSRL 109 (447)
Q Consensus 33 ~~~~~~~~~~~~v~~l~~~~f~~~~~~~-~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~--~~~~l 109 (447)
++.+.++..+++|+.|+..+|+.++... +.+||.||++|||||++++|.|+++|+.+.++.+-+.++.|||. .|..+
T Consensus 29 ~~~ptLy~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~l 108 (606)
T KOG1731|consen 29 SSNPTLYSPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKL 108 (606)
T ss_pred CCCCcccCCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhh
Confidence 3555667777999999999999999555 49999999999999999999999999999999999999999994 57889
Q ss_pred hhhCCCccccEEEEEeCCe-e----EEecCCCCHHHHHHHHHHhc-----------CCCceecC---ChhHHHHHHHhcC
Q 013240 110 ASKQEIDAFPTLKIFMHGI-P----TEYYGPRKAELLVRYLKKFV-----------APDVSILN---SDAEVSDFVENAG 170 (447)
Q Consensus 110 ~~~~~i~~~Ptl~~~~~g~-~----~~y~g~~~~~~i~~fi~~~~-----------~~~v~~i~---s~~~~~~~l~~~~ 170 (447)
|++|+|++||++++|..+. . ..+.|+....++...+.+.+ -|+...+. +..++.+.+.. .
T Consensus 109 CRef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~-~ 187 (606)
T KOG1731|consen 109 CREFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGIST-T 187 (606)
T ss_pred HhhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhccccc-c
Confidence 9999999999999997652 2 24677777778877775544 24333343 33334333322 2
Q ss_pred CcccEEEeecCChhHHHHHHHHhh--hhhHhHHhhccc-hhhhhhcCCCCCCeEEEEcCCCCCcccccC---CCChHHHH
Q 013240 171 TFFPLFIGFGLDESVMSNLALKYK--KKAWFAVAKDFS-EDTMVLYDFDKVPALVALQPSYNEHNIFYG---PFDEEFLE 244 (447)
Q Consensus 171 ~~~~~vi~f~~~~~~~~~~a~~~~--~~~~f~~~~~~~-~~~~~~~~i~~~P~l~~~~~~~~~~~~~~g---~~~~~~i~ 244 (447)
.+.+.+|.-..+...-.+.+-.+. +......+.+.. ..+.. ++..+.|..++++.+..++....+ +...+.|.
T Consensus 188 ~~yvAiv~e~~~s~lg~~~~l~~l~~~~v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~ 266 (606)
T KOG1731|consen 188 ANYVAIVFETEPSDLGWANLLNDLPSKQVGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKID 266 (606)
T ss_pred cceeEEEEecCCcccHHHHHHhhccCCCcceEEEecchhccccc-cCCCCchhhhhhcCCcccccccccccHHHHHHHHH
Confidence 233333322222222111111111 111111111111 11222 677778888898875433222222 22357788
Q ss_pred HHHHhh---CCCCccccChhhH
Q 013240 245 EFIKQN---FLPLSVPINQDTL 263 (447)
Q Consensus 245 ~fI~~~---~~p~~~~l~~~~~ 263 (447)
++|.+. ..|.+...+..+.
T Consensus 267 ~~lg~~~~a~~pt~~p~~~~~~ 288 (606)
T KOG1731|consen 267 DLLGDKNEASGPTLHPITATTA 288 (606)
T ss_pred HHhcCccccCCCCcCccccccc
Confidence 888655 4455555554333
No 29
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.79 E-value=1.5e-18 Score=138.55 Aligned_cols=101 Identities=36% Similarity=0.696 Sum_probs=91.8
Q ss_pred CeEEeChhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc--chhhhhhCCCccccEE
Q 013240 44 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--YSRLASKQEIDAFPTL 121 (447)
Q Consensus 44 ~v~~l~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~--~~~l~~~~~i~~~Ptl 121 (447)
+|+.+++.+|++.++++++++|.||++||++|+.+.|.+.++++.+.. ...+.++.+||+. ++.+|++++|+++|++
T Consensus 1 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~ 79 (104)
T cd02997 1 DVVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKE-DGKGVLAAVDCTKPEHDALKEEYNVKGFPTF 79 (104)
T ss_pred CeEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh-CCceEEEEEECCCCccHHHHHhCCCccccEE
Confidence 478899999999998889999999999999999999999999998864 2358999999998 9999999999999999
Q ss_pred EEEeCCeeE-EecCCCCHHHHHHHH
Q 013240 122 KIFMHGIPT-EYYGPRKAELLVRYL 145 (447)
Q Consensus 122 ~~~~~g~~~-~y~g~~~~~~i~~fi 145 (447)
++|++|+.. .|.|..+.+.+.+|+
T Consensus 80 ~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 80 KYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 999999754 599999999999885
No 30
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.78 E-value=1.1e-18 Score=137.60 Aligned_cols=84 Identities=24% Similarity=0.486 Sum_probs=77.1
Q ss_pred ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCc-cchhhhhhCCCccccEEEEEeCCeeEEecCCC
Q 013240 58 SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-KYSRLASKQEIDAFPTLKIFMHGIPTEYYGPR 136 (447)
Q Consensus 58 ~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~-~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~ 136 (447)
.++++++|.|||+||++|+.+.|.|+++++.+.+ +.++.||++ +++++|++|+|.++||+++|++|....|.|.+
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g~~~~~~G~~ 91 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESSIKPSLLSRYGVVGFPTILLFNSTPRVRYNGTR 91 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCCCCHHHHHhcCCeecCEEEEEcCCceeEecCCC
Confidence 4678999999999999999999999999998754 778999999 89999999999999999999999656799999
Q ss_pred CHHHHHHHH
Q 013240 137 KAELLVRYL 145 (447)
Q Consensus 137 ~~~~i~~fi 145 (447)
+.++|.+|+
T Consensus 92 ~~~~l~~f~ 100 (100)
T cd02999 92 TLDSLAAFY 100 (100)
T ss_pred CHHHHHhhC
Confidence 999999985
No 31
>PRK09381 trxA thioredoxin; Provisional
Probab=99.77 E-value=7.5e-18 Score=135.69 Aligned_cols=105 Identities=34% Similarity=0.581 Sum_probs=94.9
Q ss_pred CCCeEEeChhhHHHhH-ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccE
Q 013240 42 DGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPT 120 (447)
Q Consensus 42 ~~~v~~l~~~~f~~~~-~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Pt 120 (447)
++.|++++.++|.+.+ +.+++++|.||++||++|+.+.|.|+++++.+.+ ++.++.|||+.++.++++|+|.++|+
T Consensus 2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt 78 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPT 78 (109)
T ss_pred CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC---CcEEEEEECCCChhHHHhCCCCcCCE
Confidence 3679999999999754 6688999999999999999999999999998754 48999999999999999999999999
Q ss_pred EEEEeCCeeEE-ecCCCCHHHHHHHHHHhc
Q 013240 121 LKIFMHGIPTE-YYGPRKAELLVRYLKKFV 149 (447)
Q Consensus 121 l~~~~~g~~~~-y~g~~~~~~i~~fi~~~~ 149 (447)
+++|.+|+... +.|..+.+.|..|+...+
T Consensus 79 ~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 79 LLLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 99999998774 889999999999998765
No 32
>PRK10996 thioredoxin 2; Provisional
Probab=99.77 E-value=6.8e-18 Score=141.50 Aligned_cols=105 Identities=26% Similarity=0.546 Sum_probs=96.6
Q ss_pred CCCeEEeChhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEE
Q 013240 42 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL 121 (447)
Q Consensus 42 ~~~v~~l~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl 121 (447)
++.++.++..+|+++++++++++|.||++||++|+.+.|.+.++++.+.+ .+.++.||++++++++++|+|.++|++
T Consensus 34 ~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~~~~~~l~~~~~V~~~Ptl 110 (139)
T PRK10996 34 DGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG---KVRFVKVNTEAERELSARFRIRSIPTI 110 (139)
T ss_pred CCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC---CeEEEEEeCCCCHHHHHhcCCCccCEE
Confidence 56788999999999998899999999999999999999999999987654 499999999999999999999999999
Q ss_pred EEEeCCeeEE-ecCCCCHHHHHHHHHHhc
Q 013240 122 KIFMHGIPTE-YYGPRKAELLVRYLKKFV 149 (447)
Q Consensus 122 ~~~~~g~~~~-y~g~~~~~~i~~fi~~~~ 149 (447)
++|++|+.+. +.|..+.+.|.+|+.+.+
T Consensus 111 ii~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 111 MIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 9999998775 799999999999998753
No 33
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.77 E-value=3e-18 Score=136.78 Aligned_cols=100 Identities=41% Similarity=0.724 Sum_probs=89.0
Q ss_pred CeEEeChhhHHHhHcc-CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEE
Q 013240 44 KVIELDESNFDSAISS-FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (447)
Q Consensus 44 ~v~~l~~~~f~~~~~~-~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~ 122 (447)
.|..|+.++|++.+.+ +++++|.||++||++|+.+.|.|.++++.+++ ...+.++.+||+.+ ++|..+++.++|+++
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~ 78 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKG-DDNVVIAKMDATAN-DVPSEFVVDGFPTIL 78 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC-CCCEEEEEEeCcch-hhhhhccCCCCCEEE
Confidence 3789999999998854 48999999999999999999999999998866 24599999999987 689999999999999
Q ss_pred EEeCCe---eEEecCCCCHHHHHHHH
Q 013240 123 IFMHGI---PTEYYGPRKAELLVRYL 145 (447)
Q Consensus 123 ~~~~g~---~~~y~g~~~~~~i~~fi 145 (447)
+|.+|. ...|.|.++.++|.+|+
T Consensus 79 ~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 79 FFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEcCCCcCCceEccCCcCHHHHHhhC
Confidence 999886 45699999999999985
No 34
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.77 E-value=4.9e-18 Score=133.43 Aligned_cols=93 Identities=31% Similarity=0.518 Sum_probs=83.1
Q ss_pred hhHHHhHc-c-CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCCe
Q 013240 51 SNFDSAIS-S-FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGI 128 (447)
Q Consensus 51 ~~f~~~~~-~-~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g~ 128 (447)
++|++.+. . +++++|.||++||++|+.+.|.|.++++.+.+ .+.++.|||+.++++|++|+|.++|++++|.+|+
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 77 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG---QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQ 77 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC---cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCE
Confidence 36777773 3 57999999999999999999999999988754 3899999999999999999999999999999998
Q ss_pred eEE-ecCCCCHHHHHHHHH
Q 013240 129 PTE-YYGPRKAELLVRYLK 146 (447)
Q Consensus 129 ~~~-y~g~~~~~~i~~fi~ 146 (447)
... |.|..+.+.|..|++
T Consensus 78 ~~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 78 PVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred EeeeecCCCCHHHHHHHhC
Confidence 764 999999999998873
No 35
>PHA02278 thioredoxin-like protein
Probab=99.77 E-value=5.8e-18 Score=133.38 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=81.5
Q ss_pred hhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccc----hhhhhhCCCccccEEEEEe
Q 013240 50 ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY----SRLASKQEIDAFPTLKIFM 125 (447)
Q Consensus 50 ~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~----~~l~~~~~i~~~Ptl~~~~ 125 (447)
.++|++.++++++++|+|||+||++|+.+.|.++++++.+.. ++.|+.||++.+ ++++++|+|.++||+++|+
T Consensus 4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~---~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk 80 (103)
T PHA02278 4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI---KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK 80 (103)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC---CceEEEEECCccccccHHHHHHCCCccccEEEEEE
Confidence 578999998899999999999999999999999999976432 367899999976 6899999999999999999
Q ss_pred CCeeEE-ecCCCCHHHHHHH
Q 013240 126 HGIPTE-YYGPRKAELLVRY 144 (447)
Q Consensus 126 ~g~~~~-y~g~~~~~~i~~f 144 (447)
+|+.+. ..|..+.+.|.++
T Consensus 81 ~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 81 DGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CCEEEEEEeCCCCHHHHHhh
Confidence 998875 7898888888775
No 36
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.76 E-value=6.3e-18 Score=135.09 Aligned_cols=101 Identities=49% Similarity=0.899 Sum_probs=89.7
Q ss_pred CeEEeChhhHHHhHccCC-eEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc-chhhhhhCCCccccEE
Q 013240 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-YSRLASKQEIDAFPTL 121 (447)
Q Consensus 44 ~v~~l~~~~f~~~~~~~~-~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~-~~~l~~~~~i~~~Ptl 121 (447)
.|..|++.+|++.+++.+ +++|.||++||++|+.+.|.|.++++.++. ...+.++.+||+. ++++|++++|.++|++
T Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~~~i~~~P~~ 79 (105)
T cd02998 1 NVVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN-EDDVVIAKVDADEANKDLAKKYGVSGFPTL 79 (105)
T ss_pred CeEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCC-CCCEEEEEEECCCcchhhHHhCCCCCcCEE
Confidence 367899999999986544 999999999999999999999999998863 3459999999999 9999999999999999
Q ss_pred EEEeCC--eeEEecCCCCHHHHHHHH
Q 013240 122 KIFMHG--IPTEYYGPRKAELLVRYL 145 (447)
Q Consensus 122 ~~~~~g--~~~~y~g~~~~~~i~~fi 145 (447)
++|.+| ....|.|.++.+.|.+|+
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 80 KFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEeCCCCCccccCCccCHHHHHhhC
Confidence 999887 345699999999999885
No 37
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.75 E-value=1.7e-17 Score=131.66 Aligned_cols=97 Identities=20% Similarity=0.360 Sum_probs=85.0
Q ss_pred eChhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCC
Q 013240 48 LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127 (447)
Q Consensus 48 l~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g 127 (447)
-|.++|+++++++++++|+|||+||++|+.+.|.+.++++.+.+ ..+.|+.+|++ +++++++|+|+++||+++|++|
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~--~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g 81 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD--DLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNG 81 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC--CcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECC
Confidence 36789999999899999999999999999999999999988753 24889999999 8899999999999999999999
Q ss_pred eeEEecCCCCHHHHHHHHHH
Q 013240 128 IPTEYYGPRKAELLVRYLKK 147 (447)
Q Consensus 128 ~~~~y~g~~~~~~i~~fi~~ 147 (447)
+.+....+.+.+.+.+++.+
T Consensus 82 ~~~~~~~G~~~~~~~~~i~~ 101 (102)
T cd02948 82 ELVAVIRGANAPLLNKTITE 101 (102)
T ss_pred EEEEEEecCChHHHHHHHhh
Confidence 88864333588888888865
No 38
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.74 E-value=8.9e-18 Score=132.88 Aligned_cols=98 Identities=43% Similarity=0.841 Sum_probs=88.9
Q ss_pred EeChhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeC
Q 013240 47 ELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH 126 (447)
Q Consensus 47 ~l~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~ 126 (447)
+|++++|.+.++++++++|.||++||++|+.+.|.|.++++.++. ...+.++.|||+.++.+|++|+|+++|++++|.+
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKG-DGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc-CCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 578999999998888999999999999999999999999998852 2459999999999999999999999999999998
Q ss_pred C--eeEEecCCCCHHHHHHHH
Q 013240 127 G--IPTEYYGPRKAELLVRYL 145 (447)
Q Consensus 127 g--~~~~y~g~~~~~~i~~fi 145 (447)
| ....|.|.++.+.|.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 8 455699999999998874
No 39
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.74 E-value=2.1e-17 Score=133.60 Aligned_cols=100 Identities=34% Similarity=0.568 Sum_probs=84.7
Q ss_pred CCeEEeChhhHHHhHccC-CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc--chhhhhhCCCcccc
Q 013240 43 GKVIELDESNFDSAISSF-DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--YSRLASKQEIDAFP 119 (447)
Q Consensus 43 ~~v~~l~~~~f~~~~~~~-~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~--~~~l~~~~~i~~~P 119 (447)
+.+++|+.++|++.+++. ++++|.||++||++|+.+.|.|+++++.+++..+.+.|+.|||+. ++++|++|+|+++|
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P 80 (114)
T cd02992 1 DPVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYP 80 (114)
T ss_pred CCeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCC
Confidence 368899999999998544 699999999999999999999999999987655569999999964 67899999999999
Q ss_pred EEEEEeCCeeE-----EecCC-CCHHHHH
Q 013240 120 TLKIFMHGIPT-----EYYGP-RKAELLV 142 (447)
Q Consensus 120 tl~~~~~g~~~-----~y~g~-~~~~~i~ 142 (447)
++++|++|... .|+|+ |..+.+.
T Consensus 81 t~~lf~~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02992 81 TLRYFPPFSKEATDGLKQEGPERDVNELR 109 (114)
T ss_pred EEEEECCCCccCCCCCcccCCccCHHHHH
Confidence 99999988533 47777 6655553
No 40
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.73 E-value=1.8e-17 Score=131.34 Aligned_cols=85 Identities=21% Similarity=0.262 Sum_probs=75.0
Q ss_pred hhhHHHhHc--cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCC
Q 013240 50 ESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127 (447)
Q Consensus 50 ~~~f~~~~~--~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g 127 (447)
.++|++.+. .+++++|.|||+||++|+.+.|.++++++++.+ .+.|++||++++++++++|+|++.||+++|++|
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~---~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G 78 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN---FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRN 78 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC---ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECC
Confidence 467888885 578999999999999999999999999998754 388999999999999999999999999999999
Q ss_pred eeEE-ecCCCC
Q 013240 128 IPTE-YYGPRK 137 (447)
Q Consensus 128 ~~~~-y~g~~~ 137 (447)
+.+. ..|..+
T Consensus 79 ~~v~~~~G~~~ 89 (114)
T cd02954 79 KHMKIDLGTGN 89 (114)
T ss_pred EEEEEEcCCCC
Confidence 8876 556543
No 41
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.71 E-value=1.1e-16 Score=127.27 Aligned_cols=93 Identities=15% Similarity=0.260 Sum_probs=78.9
Q ss_pred ChhhHHHhHcc--CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccch---hhhhhCCCccccEEEE
Q 013240 49 DESNFDSAISS--FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS---RLASKQEIDAFPTLKI 123 (447)
Q Consensus 49 ~~~~f~~~~~~--~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~---~l~~~~~i~~~Ptl~~ 123 (447)
+.++|++.+.+ +++++|.|||+||++|+.+.|.+.++++.+. .+.|+.||++++. ++|++|+|.++||+++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~----~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~ 77 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN----DVVFLLVNGDENDSTMELCRREKIIEVPHFLF 77 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC----CCEEEEEECCCChHHHHHHHHcCCCcCCEEEE
Confidence 46788998854 7899999999999999999999999998872 3899999999874 8999999999999999
Q ss_pred EeCCeeEE-ecCCCCHHHHHHHHH
Q 013240 124 FMHGIPTE-YYGPRKAELLVRYLK 146 (447)
Q Consensus 124 ~~~g~~~~-y~g~~~~~~i~~fi~ 146 (447)
|++|+.+. +.| ...+.|.+-+.
T Consensus 78 ~~~G~~v~~~~G-~~~~~l~~~~~ 100 (103)
T cd02985 78 YKDGEKIHEEEG-IGPDELIGDVL 100 (103)
T ss_pred EeCCeEEEEEeC-CCHHHHHHHHH
Confidence 99998765 777 45566666554
No 42
>PLN02309 5'-adenylylsulfate reductase
Probab=99.71 E-value=8.6e-17 Score=158.03 Aligned_cols=108 Identities=25% Similarity=0.508 Sum_probs=95.5
Q ss_pred ccCCCCeEEeChhhHHHhH---ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCc-cchhhhh-hC
Q 013240 39 FKIDGKVIELDESNFDSAI---SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-KYSRLAS-KQ 113 (447)
Q Consensus 39 ~~~~~~v~~l~~~~f~~~~---~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~-~~~~l~~-~~ 113 (447)
...+..|+.|+.++|++++ +.++++||.||+|||++|+.+.|.|+++++.+.+. .+.|++|||+ .+.++|. +|
T Consensus 341 l~~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~--~V~f~kVD~d~~~~~la~~~~ 418 (457)
T PLN02309 341 IFNSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS--GVKVAKFRADGDQKEFAKQEL 418 (457)
T ss_pred ccCCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CeEEEEEECCCcchHHHHhhC
Confidence 3356789999999999987 46789999999999999999999999999988653 4999999999 8899997 69
Q ss_pred CCccccEEEEEeCCe--eEEecC-CCCHHHHHHHHHHh
Q 013240 114 EIDAFPTLKIFMHGI--PTEYYG-PRKAELLVRYLKKF 148 (447)
Q Consensus 114 ~i~~~Ptl~~~~~g~--~~~y~g-~~~~~~i~~fi~~~ 148 (447)
+|.++||+++|.+|. ++.|.| .|+.++|+.|++.+
T Consensus 419 ~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 419 QLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred CCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 999999999999874 567975 79999999999865
No 43
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.71 E-value=1.2e-16 Score=129.35 Aligned_cols=89 Identities=27% Similarity=0.435 Sum_probs=80.0
Q ss_pred CCCeEEeChhhHHHhHccC---CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccc
Q 013240 42 DGKVIELDESNFDSAISSF---DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAF 118 (447)
Q Consensus 42 ~~~v~~l~~~~f~~~~~~~---~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~ 118 (447)
.+.+..+++++|.+.+.+. ++++|.||+|||++|+.+.|.++++++.+.+ +.|++||++++ ++|++|+|.++
T Consensus 3 ~g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~f~~vd~~~~-~l~~~~~i~~~ 77 (113)
T cd02957 3 FGEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TKFVKINAEKA-FLVNYLDIKVL 77 (113)
T ss_pred CceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cEEEEEEchhh-HHHHhcCCCcC
Confidence 4688999999999998655 8999999999999999999999999987643 88999999999 99999999999
Q ss_pred cEEEEEeCCeeEE-ecCC
Q 013240 119 PTLKIFMHGIPTE-YYGP 135 (447)
Q Consensus 119 Ptl~~~~~g~~~~-y~g~ 135 (447)
||+++|++|+.+. +.|.
T Consensus 78 Pt~~~f~~G~~v~~~~G~ 95 (113)
T cd02957 78 PTLLVYKNGELIDNIVGF 95 (113)
T ss_pred CEEEEEECCEEEEEEecH
Confidence 9999999998775 6663
No 44
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.71 E-value=9.4e-17 Score=157.77 Aligned_cols=106 Identities=25% Similarity=0.474 Sum_probs=92.7
Q ss_pred CCCCeEEeChhhHHHhHc---cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccch-hhh-hhCCC
Q 013240 41 IDGKVIELDESNFDSAIS---SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-RLA-SKQEI 115 (447)
Q Consensus 41 ~~~~v~~l~~~~f~~~~~---~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~-~l~-~~~~i 115 (447)
.+..|+.||.+||++.++ .++++||.||+|||++|+.+.|.|+++++.+.+. .+.|+.|||+.+. .+| ++|+|
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~--~v~~~kVdvD~~~~~~~~~~~~I 426 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS--GVKVAKFRADGDQKEFAKQELQL 426 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CcEEEEEECCCCccHHHHHHcCC
Confidence 566899999999999985 7789999999999999999999999999988653 3889999999764 455 78999
Q ss_pred ccccEEEEEeCCe--eEEec-CCCCHHHHHHHHHHh
Q 013240 116 DAFPTLKIFMHGI--PTEYY-GPRKAELLVRYLKKF 148 (447)
Q Consensus 116 ~~~Ptl~~~~~g~--~~~y~-g~~~~~~i~~fi~~~ 148 (447)
.++||+++|.+|. ++.|. |.|+.++|+.|++.+
T Consensus 427 ~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 427 GSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred CccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 9999999999984 56797 589999999999753
No 45
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.70 E-value=1.2e-16 Score=125.73 Aligned_cols=97 Identities=16% Similarity=0.085 Sum_probs=88.1
Q ss_pred CCeEEeChhhHHHhHccCCeEEEEEECCC--ChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccE
Q 013240 43 GKVIELDESNFDSAISSFDYILVDFYAPW--CGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPT 120 (447)
Q Consensus 43 ~~v~~l~~~~f~~~~~~~~~~lV~f~~~~--C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Pt 120 (447)
.+...+|..||++.+..+.+.+|.||++| |++|+.+.|.++++++.+.+ .+.|++||++++++++.+|+|++.||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~---~v~f~kVdid~~~~la~~f~V~sIPT 86 (111)
T cd02965 10 HGWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG---RFRAAVVGRADEQALAARFGVLRTPA 86 (111)
T ss_pred cCCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC---cEEEEEEECCCCHHHHHHcCCCcCCE
Confidence 45678899999999988899999999997 99999999999999998754 38999999999999999999999999
Q ss_pred EEEEeCCeeEE-ecCCCCHHHHH
Q 013240 121 LKIFMHGIPTE-YYGPRKAELLV 142 (447)
Q Consensus 121 l~~~~~g~~~~-y~g~~~~~~i~ 142 (447)
+++|++|+.+. ..|..+.+++.
T Consensus 87 li~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 87 LLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEEEECCEEEEEEeCccCHHHHh
Confidence 99999998885 78988877764
No 46
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.70 E-value=2e-16 Score=125.32 Aligned_cols=98 Identities=36% Similarity=0.629 Sum_probs=87.5
Q ss_pred eChhhHHHhHcc-CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeC
Q 013240 48 LDESNFDSAISS-FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH 126 (447)
Q Consensus 48 l~~~~f~~~~~~-~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~ 126 (447)
++.++|.+.+++ .++++|.||++||++|+.+.|.+.++++.+.+ ++.|+.|||+.++.++++|+|.++|++++|.+
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~ 77 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG---KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKN 77 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC---CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeC
Confidence 467889998865 45999999999999999999999999987753 49999999999999999999999999999999
Q ss_pred CeeEE-ecCCCCHHHHHHHHHHh
Q 013240 127 GIPTE-YYGPRKAELLVRYLKKF 148 (447)
Q Consensus 127 g~~~~-y~g~~~~~~i~~fi~~~ 148 (447)
|+... +.|..+.+.+.+|+.+.
T Consensus 78 g~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 78 GKEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred CcEeeeecCCCCHHHHHHHHHhh
Confidence 98765 78999999999999875
No 47
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.70 E-value=5.4e-16 Score=140.29 Aligned_cols=188 Identities=20% Similarity=0.208 Sum_probs=128.3
Q ss_pred hhHHHhHccCCeEEEEEEC---CCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCC
Q 013240 51 SNFDSAISSFDYILVDFYA---PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127 (447)
Q Consensus 51 ~~f~~~~~~~~~~lV~f~~---~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g 127 (447)
+.|.+-++ +...++.|++ +||++|+.+.|.++++++.+.+ -.+.++.+|.+++++++++|+|.++||+++|++|
T Consensus 11 ~~~~~~~~-~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g 87 (215)
T TIGR02187 11 ELFLKELK-NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEG 87 (215)
T ss_pred HHHHHhcC-CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecCCcccHHHHHHcCCCccCEEEEEeCC
Confidence 44444444 4555777888 9999999999999999987743 2366777777799999999999999999999999
Q ss_pred eeE--EecCCCCHHHHHHHHHHhcC--CCceecCChhHHHHHHHhcCCcccEEEeecCC-hh-------HHHHHHHHhhh
Q 013240 128 IPT--EYYGPRKAELLVRYLKKFVA--PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-ES-------VMSNLALKYKK 195 (447)
Q Consensus 128 ~~~--~y~g~~~~~~i~~fi~~~~~--~~v~~i~s~~~~~~~l~~~~~~~~~vi~f~~~-~~-------~~~~~a~~~~~ 195 (447)
+.. .|.|..+.+.+.+|+..++. .....+ +. +..+.++..+.. +.++.|... +. ....++..+.
T Consensus 88 ~~~~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L-~~-~~~~~l~~~~~p-v~I~~F~a~~C~~C~~~~~~l~~l~~~~~- 163 (215)
T TIGR02187 88 KDGGIRYTGIPAGYEFAALIEDIVRVSQGEPGL-SE-KTVELLQSLDEP-VRIEVFVTPTCPYCPYAVLMAHKFALAND- 163 (215)
T ss_pred eeeEEEEeecCCHHHHHHHHHHHHHhcCCCCCC-CH-HHHHHHHhcCCC-cEEEEEECCCCCCcHHHHHHHHHHHHhcC-
Confidence 775 58999999999999988742 223333 23 333444433221 234435432 22 2333333321
Q ss_pred hhHhH-HhhccchhhhhhcCCCCCCeEEEEcCCCCCcccccCCCChHHHHHHHHh
Q 013240 196 KAWFA-VAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQ 249 (447)
Q Consensus 196 ~~~f~-~~~~~~~~~~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~fI~~ 249 (447)
...+. +..+..+++..+|++...|++++++.+. .+.|....+.+.+|+.+
T Consensus 164 ~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~----~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 164 KILGEMIEANENPDLAEKYGVMSVPKIVINKGVE----EFVGAYPEEQFLEYILS 214 (215)
T ss_pred ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE----EEECCCCHHHHHHHHHh
Confidence 12111 1223457788999999999999986431 27888888899999875
No 48
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.70 E-value=3e-16 Score=126.47 Aligned_cols=89 Identities=27% Similarity=0.412 Sum_probs=80.5
Q ss_pred CCCeEEeCh-hhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccE
Q 013240 42 DGKVIELDE-SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPT 120 (447)
Q Consensus 42 ~~~v~~l~~-~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Pt 120 (447)
.+.+..+++ ++|.+.+.++++++|.||+|||++|+.+.|.++++++.+.+ +.|.+||++++++++++|+|.++||
T Consensus 3 ~g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~----i~f~~Vd~~~~~~l~~~~~v~~vPt 78 (113)
T cd02989 3 HGKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE----TKFIKVNAEKAPFLVEKLNIKVLPT 78 (113)
T ss_pred CCCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC----CEEEEEEcccCHHHHHHCCCccCCE
Confidence 367888887 99999998889999999999999999999999999987643 8999999999999999999999999
Q ss_pred EEEEeCCeeEE-ecC
Q 013240 121 LKIFMHGIPTE-YYG 134 (447)
Q Consensus 121 l~~~~~g~~~~-y~g 134 (447)
+++|++|+.+. +.|
T Consensus 79 ~l~fk~G~~v~~~~g 93 (113)
T cd02989 79 VILFKNGKTVDRIVG 93 (113)
T ss_pred EEEEECCEEEEEEEC
Confidence 99999998764 444
No 49
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.4e-16 Score=153.62 Aligned_cols=105 Identities=40% Similarity=0.680 Sum_probs=93.1
Q ss_pred CCeEEeChhhHHHhH-ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEE
Q 013240 43 GKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL 121 (447)
Q Consensus 43 ~~v~~l~~~~f~~~~-~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl 121 (447)
+.|..|-.+||+.++ ++.+-+||.||||||+||+++.|.|+++|+.+++ .+.|.++++|.+.|-- ....+++||||
T Consensus 366 ~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~-~~~vviAKmDaTaNd~--~~~~~~~fPTI 442 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKD-DENVVIAKMDATANDV--PSLKVDGFPTI 442 (493)
T ss_pred CCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcC-CCCcEEEEeccccccC--ccccccccceE
Confidence 569999999999988 6778999999999999999999999999999988 5679999999987743 34577789999
Q ss_pred EEEeCCe---eEEecCCCCHHHHHHHHHHhcC
Q 013240 122 KIFMHGI---PTEYYGPRKAELLVRYLKKFVA 150 (447)
Q Consensus 122 ~~~~~g~---~~~y~g~~~~~~i~~fi~~~~~ 150 (447)
++|..|. ++.|.|+|+.+++..|+.+...
T Consensus 443 ~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 443 LFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred EEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 9999874 7789999999999999988765
No 50
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.66 E-value=1.1e-15 Score=120.17 Aligned_cols=94 Identities=22% Similarity=0.468 Sum_probs=80.9
Q ss_pred ChhhHHHhHccC--CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeC
Q 013240 49 DESNFDSAISSF--DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH 126 (447)
Q Consensus 49 ~~~~f~~~~~~~--~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~ 126 (447)
+.++|++++... ++++|.||++||++|+.+.|.++++++.+ ...+.++.+|++.++++|++|+|.++||+++|.+
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~---~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 77 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEA---FPSVLFLSIEAEELPEISEKFEITAVPTFVFFRN 77 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHh---CCceEEEEEccccCHHHHHhcCCccccEEEEEEC
Confidence 357889988666 99999999999999999999999999886 2359999999999999999999999999999999
Q ss_pred CeeEEecCCCCHHHHHHHH
Q 013240 127 GIPTEYYGPRKAELLVRYL 145 (447)
Q Consensus 127 g~~~~y~g~~~~~~i~~fi 145 (447)
|+.+....+...+.|.+.+
T Consensus 78 g~~~~~~~g~~~~~l~~~~ 96 (97)
T cd02984 78 GTIVDRVSGADPKELAKKV 96 (97)
T ss_pred CEEEEEEeCCCHHHHHHhh
Confidence 9887644445667776654
No 51
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.64 E-value=1e-15 Score=122.07 Aligned_cols=93 Identities=23% Similarity=0.314 Sum_probs=81.3
Q ss_pred hhHHHhHccCCeEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCCCeEEEEEeCcc----chhhhhhCCCccccEEEE
Q 013240 51 SNFDSAISSFDYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVDADK----YSRLASKQEIDAFPTLKI 123 (447)
Q Consensus 51 ~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~---~~~a~~l~~~~~~v~~~~Vd~~~----~~~l~~~~~i~~~Ptl~~ 123 (447)
+.|.++++++++++|.||++||++|+.+.|.+ .++++.+.+ .+.++.||++. .++++++|+|.++||+++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 57889999999999999999999999999998 678877764 49999999987 678999999999999999
Q ss_pred Ee--CCeeE-EecCCCCHHHHHHHHH
Q 013240 124 FM--HGIPT-EYYGPRKAELLVRYLK 146 (447)
Q Consensus 124 ~~--~g~~~-~y~g~~~~~~i~~fi~ 146 (447)
|. +|+.. .+.|..+.++|.++++
T Consensus 79 ~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 79 YGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred ECCCCCCCCcccccccCHHHHHHHhC
Confidence 98 56644 5899999999988863
No 52
>PTZ00051 thioredoxin; Provisional
Probab=99.64 E-value=2e-15 Score=119.04 Aligned_cols=92 Identities=37% Similarity=0.729 Sum_probs=79.7
Q ss_pred EEe-ChhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEE
Q 013240 46 IEL-DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF 124 (447)
Q Consensus 46 ~~l-~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~ 124 (447)
..+ +.++|.++++.+++++|.||++||++|+.+.|.|.++++.+. .+.++.|||+++.+++++|+|.++|++++|
T Consensus 3 ~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 78 (98)
T PTZ00051 3 HIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT----KMVFVKVDVDELSEVAEKENITSMPTFKVF 78 (98)
T ss_pred EEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC----CcEEEEEECcchHHHHHHCCCceeeEEEEE
Confidence 444 357899999989999999999999999999999999998653 389999999999999999999999999999
Q ss_pred eCCeeEE-ecCCCCHHHHH
Q 013240 125 MHGIPTE-YYGPRKAELLV 142 (447)
Q Consensus 125 ~~g~~~~-y~g~~~~~~i~ 142 (447)
++|+... +.|. ..+.|.
T Consensus 79 ~~g~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 79 KNGSVVDTLLGA-NDEALK 96 (98)
T ss_pred eCCeEEEEEeCC-CHHHhh
Confidence 9998875 7775 555554
No 53
>PTZ00102 disulphide isomerase; Provisional
Probab=99.64 E-value=1.9e-15 Score=154.08 Aligned_cols=113 Identities=27% Similarity=0.518 Sum_probs=100.5
Q ss_pred CCCCeEEeChhhHHHhH-ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCcccc
Q 013240 41 IDGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP 119 (447)
Q Consensus 41 ~~~~v~~l~~~~f~~~~-~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~P 119 (447)
.++.|..|+.++|++.+ +.+++++|.|||+||+||+.+.|.|.++++.++. ...+.++.+||+.+...|+.++++++|
T Consensus 355 ~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~v~~~~id~~~~~~~~~~~~v~~~P 433 (477)
T PTZ00102 355 QDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKD-NDSIIVAKMNGTANETPLEEFSWSAFP 433 (477)
T ss_pred CCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhcc-CCcEEEEEEECCCCccchhcCCCcccC
Confidence 36779999999999985 6778999999999999999999999999998765 346999999999999999999999999
Q ss_pred EEEEEeCCee--EEecCCCCHHHHHHHHHHhcCCCce
Q 013240 120 TLKIFMHGIP--TEYYGPRKAELLVRYLKKFVAPDVS 154 (447)
Q Consensus 120 tl~~~~~g~~--~~y~g~~~~~~i~~fi~~~~~~~v~ 154 (447)
|+++|.+|.. ..|.|.++.++|.+|+.++...+..
T Consensus 434 t~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~~~ 470 (477)
T PTZ00102 434 TILFVKAGERTPIPYEGERTVEGFKEFVNKHATNPFE 470 (477)
T ss_pred eEEEEECCCcceeEecCcCCHHHHHHHHHHcCCCCcc
Confidence 9999998753 4799999999999999998865433
No 54
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.62 E-value=5.8e-15 Score=121.71 Aligned_cols=83 Identities=19% Similarity=0.216 Sum_probs=72.1
Q ss_pred ChhhHHHhH--ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEE-EEe
Q 013240 49 DESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK-IFM 125 (447)
Q Consensus 49 ~~~~f~~~~--~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~-~~~ 125 (447)
+..+|++++ +++++++|.|||+||++|+.+.|.++++++++.+ .+.|++||++++++++++|+|++.|+++ +|+
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~---~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk 86 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN---FAVIYLVDITEVPDFNTMYELYDPCTVMFFFR 86 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC---ceEEEEEECCCCHHHHHHcCccCCCcEEEEEE
Confidence 367899988 4678999999999999999999999999998754 3888999999999999999999876666 999
Q ss_pred CCe-eEE-ecC
Q 013240 126 HGI-PTE-YYG 134 (447)
Q Consensus 126 ~g~-~~~-y~g 134 (447)
+|+ .+. ..|
T Consensus 87 ~g~~~vd~~tG 97 (142)
T PLN00410 87 NKHIMIDLGTG 97 (142)
T ss_pred CCeEEEEEecc
Confidence 997 555 456
No 55
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.5e-15 Score=116.90 Aligned_cols=84 Identities=33% Similarity=0.648 Sum_probs=71.9
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCCeeEE-ecCCCC
Q 013240 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTE-YYGPRK 137 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g~~~~-y~g~~~ 137 (447)
.+++++|+|||+|||+|+.+.|.+.+++.++.. +.|.+||+++..++|++++|+..||+.+|++|+... +.|.-.
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~ 95 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANK 95 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCH
Confidence 459999999999999999999999999987643 999999999999999999999999999999998775 666543
Q ss_pred HHHHHHHHHH
Q 013240 138 AELLVRYLKK 147 (447)
Q Consensus 138 ~~~i~~fi~~ 147 (447)
. .+.+.+.+
T Consensus 96 ~-~l~~~i~~ 104 (106)
T KOG0907|consen 96 A-ELEKKIAK 104 (106)
T ss_pred H-HHHHHHHh
Confidence 3 55555443
No 56
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.61 E-value=8.2e-15 Score=123.14 Aligned_cols=98 Identities=21% Similarity=0.428 Sum_probs=83.3
Q ss_pred hhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc--chhhhhhCCCccccEEEEEe-C
Q 013240 50 ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--YSRLASKQEIDAFPTLKIFM-H 126 (447)
Q Consensus 50 ~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~--~~~l~~~~~i~~~Ptl~~~~-~ 126 (447)
...|+.++..+++++|.||++||++|+.+.|.+.++++.+.+ .+.|+.||++. ..+++++|+|.++|++++|. +
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~---~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~ 86 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD---QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDRE 86 (142)
T ss_pred cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc---CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCC
Confidence 456788888889999999999999999999999999988754 26666666654 46899999999999999995 6
Q ss_pred CeeEE-ecCCCCHHHHHHHHHHhcC
Q 013240 127 GIPTE-YYGPRKAELLVRYLKKFVA 150 (447)
Q Consensus 127 g~~~~-y~g~~~~~~i~~fi~~~~~ 150 (447)
|+.+. +.|....+.|.+++.+.+.
T Consensus 87 G~~v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 87 GNEEGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHc
Confidence 87765 8899999999999988774
No 57
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.61 E-value=9.5e-15 Score=114.80 Aligned_cols=86 Identities=22% Similarity=0.384 Sum_probs=78.6
Q ss_pred ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCCeeEE-ecCCC
Q 013240 58 SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTE-YYGPR 136 (447)
Q Consensus 58 ~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g~~~~-y~g~~ 136 (447)
+.+++++|.||++||+.|+.+.|.++++++.+.+ ++.++.+|++++++++++++|.++|++++|++|+.+. +.|..
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~---~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~ 87 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG---AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVK 87 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC---ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCc
Confidence 6778999999999999999999999999988753 4999999999999999999999999999999998765 89999
Q ss_pred CHHHHHHHHH
Q 013240 137 KAELLVRYLK 146 (447)
Q Consensus 137 ~~~~i~~fi~ 146 (447)
+.+++.+|++
T Consensus 88 ~~~~~~~~l~ 97 (97)
T cd02949 88 MKSEYREFIE 97 (97)
T ss_pred cHHHHHHhhC
Confidence 9999988874
No 58
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.60 E-value=1.3e-14 Score=112.59 Aligned_cols=91 Identities=35% Similarity=0.648 Sum_probs=81.9
Q ss_pred hhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCCeeE
Q 013240 51 SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPT 130 (447)
Q Consensus 51 ~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g~~~ 130 (447)
++|++.++.+++++|.||++||++|+.+.|.+.+++.. ...+.++.+||+.++++++++++.++|++++|.+|+..
T Consensus 1 ~~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~ 76 (93)
T cd02947 1 EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE----YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEV 76 (93)
T ss_pred CchHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH----CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEE
Confidence 36788888889999999999999999999999999876 23499999999999999999999999999999999866
Q ss_pred E-ecCCCCHHHHHHHH
Q 013240 131 E-YYGPRKAELLVRYL 145 (447)
Q Consensus 131 ~-y~g~~~~~~i~~fi 145 (447)
. +.|..+.+.|.+|+
T Consensus 77 ~~~~g~~~~~~l~~~i 92 (93)
T cd02947 77 DRVVGADPKEELEEFL 92 (93)
T ss_pred EEEecCCCHHHHHHHh
Confidence 4 88988889998886
No 59
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.58 E-value=2.1e-14 Score=124.67 Aligned_cols=88 Identities=26% Similarity=0.349 Sum_probs=78.2
Q ss_pred CCCeEEeCh-hhHHHhHccC---CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCcc
Q 013240 42 DGKVIELDE-SNFDSAISSF---DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA 117 (447)
Q Consensus 42 ~~~v~~l~~-~~f~~~~~~~---~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~ 117 (447)
-+.+..+++ ++|.+.+.+. .+++|.||++||++|+.+.|.+.++|..+. .+.|++||+++. .++.+|+|.+
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~----~vkF~kVd~d~~-~l~~~f~v~~ 135 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP----AVKFCKIRASAT-GASDEFDTDA 135 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC----CeEEEEEeccch-hhHHhCCCCC
Confidence 588999999 9999998543 399999999999999999999999998763 399999999987 9999999999
Q ss_pred ccEEEEEeCCeeEE-ecC
Q 013240 118 FPTLKIFMHGIPTE-YYG 134 (447)
Q Consensus 118 ~Ptl~~~~~g~~~~-y~g 134 (447)
+||+++|++|+.+. +.|
T Consensus 136 vPTlllyk~G~~v~~~vG 153 (175)
T cd02987 136 LPALLVYKGGELIGNFVR 153 (175)
T ss_pred CCEEEEEECCEEEEEEec
Confidence 99999999998774 433
No 60
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.56 E-value=2.7e-14 Score=112.19 Aligned_cols=79 Identities=23% Similarity=0.292 Sum_probs=71.3
Q ss_pred hhhHHHhHc--cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCC
Q 013240 50 ESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127 (447)
Q Consensus 50 ~~~f~~~~~--~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g 127 (447)
.+.|++.+. ++++++|.|+++||++|+.+.|.++++|+++++. +.|++||.++.+++++.|+|+..||+++|.+|
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDev~dva~~y~I~amPtfvffkng 78 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDKVPVYTQYFDISYIPSTIFFFNG 78 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEeccccHHHHHhcCceeCcEEEEEECC
Confidence 356777774 5799999999999999999999999999988543 99999999999999999999999999999999
Q ss_pred eeEE
Q 013240 128 IPTE 131 (447)
Q Consensus 128 ~~~~ 131 (447)
+.+.
T Consensus 79 kh~~ 82 (114)
T cd02986 79 QHMK 82 (114)
T ss_pred cEEE
Confidence 8765
No 61
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.9e-14 Score=124.32 Aligned_cols=103 Identities=31% Similarity=0.566 Sum_probs=89.2
Q ss_pred eEEe-ChhhHHHhHccC--CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEE
Q 013240 45 VIEL-DESNFDSAISSF--DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL 121 (447)
Q Consensus 45 v~~l-~~~~f~~~~~~~--~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl 121 (447)
|+.+ ++++|+..+... +.++|+|||.||++|++++|.|..+++.+.+ ..|.+||.++.+..+..+||+..||+
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdVd~c~~taa~~gV~amPTF 78 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDVDECRGTAATNGVNAMPTF 78 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeHHHhhchhhhcCcccCceE
Confidence 5555 568899988544 6999999999999999999999999998755 88999999999999999999999999
Q ss_pred EEEeCCeeEEecCCCCHHHHHHHHHHhcCC
Q 013240 122 KIFMHGIPTEYYGPRKAELLVRYLKKFVAP 151 (447)
Q Consensus 122 ~~~~~g~~~~y~g~~~~~~i~~fi~~~~~~ 151 (447)
++|++|..++-.-..++..|.+-+.+++..
T Consensus 79 iff~ng~kid~~qGAd~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 79 IFFRNGVKIDQIQGADASGLEEKVAKYAST 108 (288)
T ss_pred EEEecCeEeeeecCCCHHHHHHHHHHHhcc
Confidence 999999998844445778888888888754
No 62
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.54 E-value=5.4e-14 Score=142.85 Aligned_cols=112 Identities=36% Similarity=0.629 Sum_probs=97.6
Q ss_pred CCCCeEEeChhhHHHhH-ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCcccc
Q 013240 41 IDGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP 119 (447)
Q Consensus 41 ~~~~v~~l~~~~f~~~~-~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~P 119 (447)
..+.|..|+.++|.+.+ +.+++++|.||++||++|+.+.|.|.++++.+++....+.|+.+||+.+. ++. ++|+++|
T Consensus 344 ~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~P 421 (462)
T TIGR01130 344 DEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFP 421 (462)
T ss_pred CCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccC
Confidence 46789999999999987 56789999999999999999999999999998864336999999999774 444 9999999
Q ss_pred EEEEEeCCee---EEecCCCCHHHHHHHHHHhcCCCce
Q 013240 120 TLKIFMHGIP---TEYYGPRKAELLVRYLKKFVAPDVS 154 (447)
Q Consensus 120 tl~~~~~g~~---~~y~g~~~~~~i~~fi~~~~~~~v~ 154 (447)
++++|.+|.. ..|.|.++.+.|.+|+.+....++.
T Consensus 422 t~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~ 459 (462)
T TIGR01130 422 TIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPLE 459 (462)
T ss_pred EEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCCCCc
Confidence 9999998843 5799999999999999998866554
No 63
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.54 E-value=6.4e-14 Score=112.99 Aligned_cols=95 Identities=18% Similarity=0.235 Sum_probs=81.5
Q ss_pred hhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCCe--
Q 013240 51 SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGI-- 128 (447)
Q Consensus 51 ~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g~-- 128 (447)
++|.+.+.....++|.||++||++|+.+.|.+++++... +++.+..||.+++++++++|+|.++||+++|++|.
T Consensus 13 ~~~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~----~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~ 88 (113)
T cd02975 13 EEFFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS----DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKD 88 (113)
T ss_pred HHHHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc----CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeec
Confidence 346666667788999999999999999999999999764 24899999999999999999999999999999863
Q ss_pred -eEEecCCCCHHHHHHHHHHhc
Q 013240 129 -PTEYYGPRKAELLVRYLKKFV 149 (447)
Q Consensus 129 -~~~y~g~~~~~~i~~fi~~~~ 149 (447)
.+.|.|....+++.+|+...+
T Consensus 89 ~~~~~~G~~~~~el~~~i~~i~ 110 (113)
T cd02975 89 GGIRYYGLPAGYEFASLIEDIV 110 (113)
T ss_pred ceEEEEecCchHHHHHHHHHHH
Confidence 336889888899999987764
No 64
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.53 E-value=1.2e-13 Score=112.70 Aligned_cols=97 Identities=13% Similarity=0.100 Sum_probs=79.3
Q ss_pred CeEEeChhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccch-----------hhhhh
Q 013240 44 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-----------RLASK 112 (447)
Q Consensus 44 ~v~~l~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~-----------~l~~~ 112 (447)
....++.++|.+.+++++..+|+|+++||++|+.+.|.+++++++. ++.++.||.+.++ ++.++
T Consensus 7 ~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~ 81 (122)
T TIGR01295 7 GLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT-----KAPIYYIDSENNGSFEMSSLNDLTAFRSR 81 (122)
T ss_pred cceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc-----CCcEEEEECCCccCcCcccHHHHHHHHHH
Confidence 5667888999999999999999999999999999999999999862 2667888887543 55566
Q ss_pred CC----CccccEEEEEeCCeeEE-ecC-CCCHHHHHHHH
Q 013240 113 QE----IDAFPTLKIFMHGIPTE-YYG-PRKAELLVRYL 145 (447)
Q Consensus 113 ~~----i~~~Ptl~~~~~g~~~~-y~g-~~~~~~i~~fi 145 (447)
|+ |.++||+++|++|+.+. ..| ..+.++|.+|+
T Consensus 82 ~~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 82 FGIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred cCCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHh
Confidence 65 55699999999998876 567 55688888775
No 65
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.51 E-value=7.3e-13 Score=115.92 Aligned_cols=108 Identities=19% Similarity=0.328 Sum_probs=84.4
Q ss_pred ccCCCCeEEeChhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCc--------------
Q 013240 39 FKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-------------- 104 (447)
Q Consensus 39 ~~~~~~v~~l~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~-------------- 104 (447)
...+..+..++.+.+.-.--.+++++|.||++||++|+...|.+.++++++.+. .+.+..|+++
T Consensus 40 ~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vi~i~~d~~~~~~~~~~~~~~ 117 (173)
T PRK03147 40 EAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK--GVEIIAVNVDETELAVKNFVNRYG 117 (173)
T ss_pred CCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC--CeEEEEEEcCCCHHHHHHHHHHhC
Confidence 333455666666655433335689999999999999999999999999988753 3777888875
Q ss_pred --------cchhhhhhCCCccccEEEEEe-CCeeE-EecCCCCHHHHHHHHHHh
Q 013240 105 --------KYSRLASKQEIDAFPTLKIFM-HGIPT-EYYGPRKAELLVRYLKKF 148 (447)
Q Consensus 105 --------~~~~l~~~~~i~~~Ptl~~~~-~g~~~-~y~g~~~~~~i~~fi~~~ 148 (447)
.+..+++.|++.++|+++++. +|+.. .+.|..+.+++.+++.+.
T Consensus 118 ~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 118 LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 346788999999999999886 57666 489999999999988754
No 66
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.1e-13 Score=136.36 Aligned_cols=108 Identities=41% Similarity=0.735 Sum_probs=98.6
Q ss_pred CeEEeChhhHHHhH-ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEE
Q 013240 44 KVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (447)
Q Consensus 44 ~v~~l~~~~f~~~~-~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~ 122 (447)
.+..++..+|...+ +.+..|+|.||+|||+||+.+.|+|++++..++. +..+.++.+||+.+..+|+++++++||++.
T Consensus 145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~ 223 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKIDATVHKSLASRLEVRGYPTLK 223 (383)
T ss_pred ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEeeccchHHHHhhhhcccCCceEE
Confidence 59999999999977 5567999999999999999999999999999876 456999999999999999999999999999
Q ss_pred EEeCCee--EEecCCCCHHHHHHHHHHhcCCC
Q 013240 123 IFMHGIP--TEYYGPRKAELLVRYLKKFVAPD 152 (447)
Q Consensus 123 ~~~~g~~--~~y~g~~~~~~i~~fi~~~~~~~ 152 (447)
+|.+|.. ..|.|.|+.+.|++|+.+...+.
T Consensus 224 ~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 224 LFPPGEEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred EecCCCcccccccccccHHHHHHHHHhhcCCC
Confidence 9999866 44899999999999999988774
No 67
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.47 E-value=3.2e-13 Score=107.42 Aligned_cols=94 Identities=22% Similarity=0.250 Sum_probs=79.9
Q ss_pred hHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCc--cccEEEEEeC--C
Q 013240 52 NFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID--AFPTLKIFMH--G 127 (447)
Q Consensus 52 ~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~--~~Ptl~~~~~--g 127 (447)
++.......+++++.|+++||++|+.+.|.++++|+.+++ ++.|+.||+++++++++.+|+. ++|++++++. |
T Consensus 4 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~---~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~ 80 (103)
T cd02982 4 TFFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKG---KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDG 80 (103)
T ss_pred HHhhhhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC---eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccc
Confidence 3444433368999999999999999999999999999874 4999999999999999999999 9999999998 6
Q ss_pred eeEEecC-CCCHHHHHHHHHHh
Q 013240 128 IPTEYYG-PRKAELLVRYLKKF 148 (447)
Q Consensus 128 ~~~~y~g-~~~~~~i~~fi~~~ 148 (447)
....+.+ ..+.++|.+|+.+.
T Consensus 81 ~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 81 KKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred cccCCCccccCHHHHHHHHHhh
Confidence 5555544 45899999999865
No 68
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.46 E-value=6e-13 Score=109.79 Aligned_cols=97 Identities=19% Similarity=0.262 Sum_probs=80.3
Q ss_pred hhHHHhHccC-CeEEEEEECCCChhhhhhhHHHH---HHHHHhhcCCCCeEEEEEeCccc-------------hhhhhhC
Q 013240 51 SNFDSAISSF-DYILVDFYAPWCGHCKRLAPQLD---EAAPILAKLKEPIVIAKVDADKY-------------SRLASKQ 113 (447)
Q Consensus 51 ~~f~~~~~~~-~~~lV~f~~~~C~~C~~~~p~~~---~~a~~l~~~~~~v~~~~Vd~~~~-------------~~l~~~~ 113 (447)
+.+.++.+++ ++++|.||++||++|+.+.|.+. .+.+.+++ .+.+..||.+.+ .+++++|
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~ 80 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA---HFVVVYINIDGDKEVTDFDGEALSEKELARKY 80 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh---heEEEEEEccCCceeeccCCCCccHHHHHHHc
Confidence 4567788888 99999999999999999999985 45555543 388899998764 7899999
Q ss_pred CCccccEEEEEeC--CeeE-EecCCCCHHHHHHHHHHhcC
Q 013240 114 EIDAFPTLKIFMH--GIPT-EYYGPRKAELLVRYLKKFVA 150 (447)
Q Consensus 114 ~i~~~Ptl~~~~~--g~~~-~y~g~~~~~~i~~fi~~~~~ 150 (447)
+|.++||+++|.+ |+.+ .+.|..+.+.+.++++....
T Consensus 81 ~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 81 RVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred CCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 9999999999987 4665 48899999999888877654
No 69
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.44 E-value=1.1e-12 Score=115.33 Aligned_cols=87 Identities=17% Similarity=0.332 Sum_probs=74.9
Q ss_pred CCCCeEEeChhhHHHhHc-c--CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCcc
Q 013240 41 IDGKVIELDESNFDSAIS-S--FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA 117 (447)
Q Consensus 41 ~~~~v~~l~~~~f~~~~~-~--~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~ 117 (447)
.-+.|..++..+|...+. . +.+++|.||++||++|+.+.|.|.++|..+. .+.|++||++.. +..|++++
T Consensus 80 ~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~----~vkFvkI~ad~~---~~~~~i~~ 152 (192)
T cd02988 80 KFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP----DTKFVKIISTQC---IPNYPDKN 152 (192)
T ss_pred CCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC----CCEEEEEEhHHh---HhhCCCCC
Confidence 348899999999998763 3 3489999999999999999999999999764 389999999753 68999999
Q ss_pred ccEEEEEeCCeeEE-ecC
Q 013240 118 FPTLKIFMHGIPTE-YYG 134 (447)
Q Consensus 118 ~Ptl~~~~~g~~~~-y~g 134 (447)
.||+++|++|+.+. +.|
T Consensus 153 lPTlliyk~G~~v~~ivG 170 (192)
T cd02988 153 LPTILVYRNGDIVKQFIG 170 (192)
T ss_pred CCEEEEEECCEEEEEEeC
Confidence 99999999998775 555
No 70
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=99.43 E-value=2.1e-12 Score=106.28 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=94.8
Q ss_pred Ccccc-ChhhHHhhhcCCCcEEEEEEeC---CChhhHHHHHHHHHHHHHhCCC--ceEEEEeccchHhHHhhcCCCCCCC
Q 013240 254 LSVPI-NQDTLNLLKDDKRKIVLAIVED---ETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSK 327 (447)
Q Consensus 254 ~~~~l-~~~~~~~~~~~~~~~vl~~~~~---~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~~i~~~~~ 327 (447)
-+.++ +++.++..|..++.|+++|++. .+.+..+++.+.|+++|+++++ +.|+|+|+.++..+++.||+ +..+
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl-~~~~ 81 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNI-GGFG 81 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCC-CccC
Confidence 34444 4677788998888999999863 3456678899999999999986 89999999999999999999 5678
Q ss_pred CceEEEEeCCc-cceecCCCCCCCcccchhHHHHHHHHHhcCcccccccc
Q 013240 328 LPKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQKKVA 376 (447)
Q Consensus 328 ~P~vvi~~~~~-~y~~~~g~~~~~~~~~~~~i~~Fl~~~~~gkl~~~~ks 376 (447)
+|++++++.++ +|..+. ++++.++|.+|++++++|++.....+
T Consensus 82 ~P~v~i~~~~~~KY~~~~------~~~t~e~i~~Fv~~~l~Gkl~~~~~~ 125 (130)
T cd02983 82 YPAMVAINFRKMKFATLK------GSFSEDGINEFLRELSYGRGPTLPVN 125 (130)
T ss_pred CCEEEEEecccCcccccc------CccCHHHHHHHHHHHHcCCcccccCC
Confidence 99999999965 676554 45778899999999999998664433
No 71
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.43 E-value=1.2e-12 Score=99.30 Aligned_cols=80 Identities=24% Similarity=0.340 Sum_probs=70.7
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCCeeEEecCCCCHHHHH
Q 013240 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLV 142 (447)
Q Consensus 63 ~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~i~ 142 (447)
.+..||++||++|+...|.+++++..++. .+.+..||+++++++++++++.++|++++ +|+ ..+.|..+.+.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~-~~~~G~~~~~~l~ 75 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD---AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD-VEFIGAPTKEELV 75 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC---ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE-EEEecCCCHHHHH
Confidence 36789999999999999999999987743 38999999999999999999999999986 666 4788999999999
Q ss_pred HHHHHh
Q 013240 143 RYLKKF 148 (447)
Q Consensus 143 ~fi~~~ 148 (447)
+++.+.
T Consensus 76 ~~l~~~ 81 (82)
T TIGR00411 76 EAIKKR 81 (82)
T ss_pred HHHHhh
Confidence 988764
No 72
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.37 E-value=4.1e-12 Score=102.10 Aligned_cols=79 Identities=20% Similarity=0.351 Sum_probs=67.7
Q ss_pred ChhhHHHhHcc--CCeEEEEEEC-------CCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc-------chhhhhh
Q 013240 49 DESNFDSAISS--FDYILVDFYA-------PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-------YSRLASK 112 (447)
Q Consensus 49 ~~~~f~~~~~~--~~~~lV~f~~-------~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~-------~~~l~~~ 112 (447)
+.++|.+.+.. +++++|.||| +||++|+.+.|.+++++..+.+ .+.|.+||+++ +.++..+
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~---~v~fv~Vdvd~~~~w~d~~~~~~~~ 84 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE---DCVFIYCDVGDRPYWRDPNNPFRTD 84 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC---CCEEEEEEcCCcccccCcchhhHhc
Confidence 35778888864 6799999999 9999999999999999987753 38899999976 4689999
Q ss_pred CCCc-cccEEEEEeCCeeE
Q 013240 113 QEID-AFPTLKIFMHGIPT 130 (447)
Q Consensus 113 ~~i~-~~Ptl~~~~~g~~~ 130 (447)
++|. ++||+++|.+|..+
T Consensus 85 ~~I~~~iPT~~~~~~~~~l 103 (119)
T cd02952 85 PKLTTGVPTLLRWKTPQRL 103 (119)
T ss_pred cCcccCCCEEEEEcCCcee
Confidence 9998 99999999877544
No 73
>PTZ00062 glutaredoxin; Provisional
Probab=99.37 E-value=2.5e-11 Score=107.16 Aligned_cols=92 Identities=9% Similarity=0.121 Sum_probs=79.7
Q ss_pred ChhhHHHhHccC-CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCC
Q 013240 49 DESNFDSAISSF-DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127 (447)
Q Consensus 49 ~~~~f~~~~~~~-~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g 127 (447)
+.+.|+++++++ +..+++|+|+||+.|+.+.|.+.++++++. .+.|+.||++ |+|.++|++++|++|
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~----~~~F~~V~~d--------~~V~~vPtfv~~~~g 72 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP----SLEFYVVNLA--------DANNEYGVFEFYQNS 72 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC----CcEEEEEccc--------cCcccceEEEEEECC
Confidence 467788888754 889999999999999999999999998764 3999999987 999999999999999
Q ss_pred eeEE-ecCCCCHHHHHHHHHHhcCCCc
Q 013240 128 IPTE-YYGPRKAELLVRYLKKFVAPDV 153 (447)
Q Consensus 128 ~~~~-y~g~~~~~~i~~fi~~~~~~~v 153 (447)
+.+. +.|. ++..+..++.++..+..
T Consensus 73 ~~i~r~~G~-~~~~~~~~~~~~~~~~~ 98 (204)
T PTZ00062 73 QLINSLEGC-NTSTLVSFIRGWAQKGS 98 (204)
T ss_pred EEEeeeeCC-CHHHHHHHHHHHcCCCC
Confidence 9886 5654 58999999999887644
No 74
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.29 E-value=4.2e-11 Score=119.64 Aligned_cols=89 Identities=18% Similarity=0.243 Sum_probs=73.2
Q ss_pred ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEE----------------------------EeCccchhh
Q 013240 58 SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK----------------------------VDADKYSRL 109 (447)
Q Consensus 58 ~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~----------------------------Vd~~~~~~l 109 (447)
++.++++|.|||+||++|+...|.+.++++.++..+ +.+.. |.++.+.++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~--v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l 131 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSS--ANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL 131 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence 467899999999999999999999999999875322 43333 445667789
Q ss_pred hhhCCCccccEEEEE-eCCeeEE-ecCCCCHHHHHHHHHHh
Q 013240 110 ASKQEIDAFPTLKIF-MHGIPTE-YYGPRKAELLVRYLKKF 148 (447)
Q Consensus 110 ~~~~~i~~~Ptl~~~-~~g~~~~-y~g~~~~~~i~~fi~~~ 148 (447)
++.|+|.++|+++++ ++|+.+. +.|..+.++|.++++..
T Consensus 132 ak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 132 AQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred HHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 999999999999776 5688775 89999999999999844
No 75
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.26 E-value=2.1e-10 Score=101.18 Aligned_cols=87 Identities=15% Similarity=0.236 Sum_probs=67.5
Q ss_pred ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccch-----------------------hhhhhCC
Q 013240 58 SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-----------------------RLASKQE 114 (447)
Q Consensus 58 ~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~-----------------------~l~~~~~ 114 (447)
.+.++++|.||++||++|+...|.+.++++. .+.+..|+.++++ .+++.|+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~------~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 139 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ------GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG 139 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc------CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcC
Confidence 3578999999999999999999999888642 2566667754332 3455789
Q ss_pred CccccEEEEEe-CCeeEE-ecCCCCHHHHHHHHHHhcC
Q 013240 115 IDAFPTLKIFM-HGIPTE-YYGPRKAELLVRYLKKFVA 150 (447)
Q Consensus 115 i~~~Ptl~~~~-~g~~~~-y~g~~~~~~i~~fi~~~~~ 150 (447)
+.++|+.+++. +|+... +.|..+.+.+.++++.++.
T Consensus 140 v~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 140 VYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred CCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 99999777775 687654 8899999999888877753
No 76
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=99.26 E-value=5e-11 Score=95.42 Aligned_cols=105 Identities=10% Similarity=0.148 Sum_probs=89.1
Q ss_pred ccccChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHh---CCC-ceEEEEeccchHhHHhhcCCCCCCCCce
Q 013240 255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASA---NRE-LVFCYVGIKQFADFADTFEANKKSKLPK 330 (447)
Q Consensus 255 ~~~l~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~---~~~-~~f~~vd~~~~~~~~~~~~i~~~~~~P~ 330 (447)
|+++|+++...+...+.|..++++ +.+..+.+.+.++.+|++ +++ +.|+++|..++...++.||+ +..+.|.
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f---~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl-~~~~~P~ 76 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFH---DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGK-TPADLPV 76 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEe---cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCC-CHhHCCE
Confidence 578899999999999999888777 455567888999999999 998 99999999998889999999 5668999
Q ss_pred EEEEeCCc--cceecCCCCCCCcccchhHHHHHHHHHhcCc
Q 013240 331 MVVWDGNE--NYLTVIGSESIDEEDQGSQISRFLEGYREGR 369 (447)
Q Consensus 331 vvi~~~~~--~y~~~~g~~~~~~~~~~~~i~~Fl~~~~~gk 369 (447)
++|.+.++ +|..+ .+.++.++|.+|++++++||
T Consensus 77 i~i~~~~~~~Ky~~~------~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 77 IAIDSFRHMYLFPDF------EDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred EEEEcchhcCcCCCC------ccccCHHHHHHHHHHHhcCC
Confidence 99999864 44323 35677899999999999996
No 77
>PHA02125 thioredoxin-like protein
Probab=99.25 E-value=5.4e-11 Score=88.34 Aligned_cols=68 Identities=29% Similarity=0.518 Sum_probs=55.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCCeeE-EecCC-CCHHHH
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPT-EYYGP-RKAELL 141 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g~~~-~y~g~-~~~~~i 141 (447)
++.||++||++|+.+.|.+++++ +.++.||++.+++++++|+|.++||++ .|+.+ .+.|. .+..+|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l 69 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAEL 69 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHH
Confidence 78999999999999999987642 457899999999999999999999997 57655 47774 444555
Q ss_pred HH
Q 013240 142 VR 143 (447)
Q Consensus 142 ~~ 143 (447)
.+
T Consensus 70 ~~ 71 (75)
T PHA02125 70 KE 71 (75)
T ss_pred HH
Confidence 43
No 78
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.24 E-value=5.3e-11 Score=107.70 Aligned_cols=95 Identities=19% Similarity=0.226 Sum_probs=77.6
Q ss_pred EeChhhHHHhHccCCeE-EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEe
Q 013240 47 ELDESNFDSAISSFDYI-LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFM 125 (447)
Q Consensus 47 ~l~~~~f~~~~~~~~~~-lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~ 125 (447)
.|++...+.+-+..+++ ++.||++||++|+.+.|.+++++... +.+.+..||.+.+++++++|+|.++||++++.
T Consensus 119 ~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~----~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~ 194 (215)
T TIGR02187 119 GLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN----DKILGEMIEANENPDLAEKYGVMSVPKIVINK 194 (215)
T ss_pred CCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc----CceEEEEEeCCCCHHHHHHhCCccCCEEEEec
Confidence 45555555544444555 44599999999999999999988752 34889999999999999999999999999998
Q ss_pred CCeeEEecCCCCHHHHHHHHHH
Q 013240 126 HGIPTEYYGPRKAELLVRYLKK 147 (447)
Q Consensus 126 ~g~~~~y~g~~~~~~i~~fi~~ 147 (447)
+|.. +.|....+++.+|+.+
T Consensus 195 ~~~~--~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 195 GVEE--FVGAYPEEQFLEYILS 214 (215)
T ss_pred CCEE--EECCCCHHHHHHHHHh
Confidence 8763 8899999999999875
No 79
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.24 E-value=1.3e-10 Score=119.63 Aligned_cols=101 Identities=21% Similarity=0.378 Sum_probs=81.7
Q ss_pred CeEEe-ChhhHHHhHc----cCCeEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCCCeEEEEEeCcc----chhhhh
Q 013240 44 KVIEL-DESNFDSAIS----SFDYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVDADK----YSRLAS 111 (447)
Q Consensus 44 ~v~~l-~~~~f~~~~~----~~~~~lV~f~~~~C~~C~~~~p~~---~~~a~~l~~~~~~v~~~~Vd~~~----~~~l~~ 111 (447)
....+ +.+++++.++ ++++++|+||++||++|+.++|.. .++.+.+++ +.+.++|+++ +.++++
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~----~~~v~vDvt~~~~~~~~l~~ 528 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD----TVLLQADVTANNAEDVALLK 528 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC----CEEEEEECCCCChhhHHHHH
Confidence 34445 4577877773 468999999999999999998875 567766643 7889999975 368999
Q ss_pred hCCCccccEEEEEe-CCeeE---EecCCCCHHHHHHHHHHh
Q 013240 112 KQEIDAFPTLKIFM-HGIPT---EYYGPRKAELLVRYLKKF 148 (447)
Q Consensus 112 ~~~i~~~Ptl~~~~-~g~~~---~y~g~~~~~~i~~fi~~~ 148 (447)
+|++.++|++++|. +|+.+ ++.|..+.+++.+++++.
T Consensus 529 ~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 529 HYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred HcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 99999999999996 67763 578999999999998875
No 80
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.21 E-value=2.8e-11 Score=98.09 Aligned_cols=92 Identities=18% Similarity=0.279 Sum_probs=64.1
Q ss_pred hhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccch-hhhhhCCCcc--ccEEEEEe-C
Q 013240 51 SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-RLASKQEIDA--FPTLKIFM-H 126 (447)
Q Consensus 51 ~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~-~l~~~~~i~~--~Ptl~~~~-~ 126 (447)
+.+..+..++++++|.||++||++|+.+.|.+.+.+.... .. ..|..|+.+.+. .....|++.+ +||+++|. +
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~--~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~ 86 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE-LS--HNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPS 86 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hc--CcEEEEEecCCCCchhhhcccCCCccceEEEECCC
Confidence 4455555778999999999999999999999999876543 22 234445555443 3457888886 99999996 6
Q ss_pred CeeE----EecCCCCHHHHHHHH
Q 013240 127 GIPT----EYYGPRKAELLVRYL 145 (447)
Q Consensus 127 g~~~----~y~g~~~~~~i~~fi 145 (447)
|+.. ...|.++.+....++
T Consensus 87 Gk~~~~~~~~~~~~~~~~f~~~~ 109 (117)
T cd02959 87 GDVHPEIINKKGNPNYKYFYSSA 109 (117)
T ss_pred CCCchhhccCCCCccccccCCCH
Confidence 7654 245555554444333
No 81
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.20 E-value=7.7e-11 Score=87.65 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=59.5
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCCeeEEecCC-CCHHHHH
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGP-RKAELLV 142 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~-~~~~~i~ 142 (447)
-|.||++||++|+.+.|.++++++++. .++.+..|| +.+.+.+|++.+.|++++ +|+.. +.|. .+.+.|.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~---~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~-~~G~~~~~~~l~ 72 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELG---IDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV-IMGKIPSKEEIK 72 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcC---CCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE-EEeccCCHHHHH
Confidence 378999999999999999999998764 348888887 455688999999999999 88766 7775 3557777
Q ss_pred HHH
Q 013240 143 RYL 145 (447)
Q Consensus 143 ~fi 145 (447)
+++
T Consensus 73 ~~l 75 (76)
T TIGR00412 73 EIL 75 (76)
T ss_pred HHh
Confidence 665
No 82
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.18 E-value=5.3e-10 Score=94.59 Aligned_cols=89 Identities=17% Similarity=0.199 Sum_probs=65.4
Q ss_pred HhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccc------------hhhh-hhC---CCccc
Q 013240 55 SAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY------------SRLA-SKQ---EIDAF 118 (447)
Q Consensus 55 ~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~------------~~l~-~~~---~i~~~ 118 (447)
+.+...++.+|.||++||++|++..|.+.++++++ + +.+..|+.+.. .+.. ..+ ++.++
T Consensus 45 ~~~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~----~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~i 119 (153)
T TIGR02738 45 RHANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQF-G----LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVT 119 (153)
T ss_pred hhhhcCCCEEEEEECCCChhHHHHHHHHHHHHHHc-C----CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCC
Confidence 33444567799999999999999999999999875 2 34445555432 2333 345 78999
Q ss_pred cEEEEEeC-Ce-eE-EecCCCCHHHHHHHHHHh
Q 013240 119 PTLKIFMH-GI-PT-EYYGPRKAELLVRYLKKF 148 (447)
Q Consensus 119 Ptl~~~~~-g~-~~-~y~g~~~~~~i~~fi~~~ 148 (447)
|+.+++.. |. .. .+.|..+.+.+.+.+.+.
T Consensus 120 PTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 120 PATFLVNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CeEEEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 99999965 44 34 478999999988887764
No 83
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.17 E-value=9.2e-11 Score=94.68 Aligned_cols=87 Identities=26% Similarity=0.402 Sum_probs=62.9
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccc--------------------hhhhhhCCCccc
Q 013240 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY--------------------SRLASKQEIDAF 118 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~--------------------~~l~~~~~i~~~ 118 (447)
++++.++.|++|||++|+.+.+...+..........++.+..++++.. .++++.++|+++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 568999999999999999999999865443222222477777887643 458999999999
Q ss_pred cEEEEEe-CCeeE-EecCCCCHHHHHHHH
Q 013240 119 PTLKIFM-HGIPT-EYYGPRKAELLVRYL 145 (447)
Q Consensus 119 Ptl~~~~-~g~~~-~y~g~~~~~~i~~fi 145 (447)
||++++. +|+.+ .+.|..+.+++..++
T Consensus 84 Pt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 84 PTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9999996 68766 489999999988764
No 84
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.17 E-value=1.3e-09 Score=96.15 Aligned_cols=163 Identities=23% Similarity=0.319 Sum_probs=124.3
Q ss_pred hhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeC--CeeEEecCC-CCHHHHHHHHHHhcCCCc
Q 013240 77 RLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH--GIPTEYYGP-RKAELLVRYLKKFVAPDV 153 (447)
Q Consensus 77 ~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~--g~~~~y~g~-~~~~~i~~fi~~~~~~~v 153 (447)
.....|.++|+.+.+. +.|+.+. +.++|+++++.. |++++|++ +++..|.|. .+.++|.+|+....-|.+
T Consensus 7 ~~~~~f~~~A~~~~~~---~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v 79 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGD---YQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLV 79 (184)
T ss_dssp HHHHHHHHHHHHHTTT---SEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSC
T ss_pred HHHHHHHHHHHhCcCC---cEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccccc
Confidence 4567899999998753 8898887 678999999999 99999998 457889998 899999999999999999
Q ss_pred eecCChhHHHHHHHhcCCcccEEEeecCC-h-------hHHHHHHHHhhhhhHhHHhhcc-chhhhhhcCCC--CCCeEE
Q 013240 154 SILNSDAEVSDFVENAGTFFPLFIGFGLD-E-------SVMSNLALKYKKKAWFAVAKDF-SEDTMVLYDFD--KVPALV 222 (447)
Q Consensus 154 ~~i~s~~~~~~~l~~~~~~~~~vi~f~~~-~-------~~~~~~a~~~~~~~~f~~~~~~-~~~~~~~~~i~--~~P~l~ 222 (447)
.+++.. ++..+...... ++++.|... . ..+..+|..+++...|..+... .+.++..++++ ..|+++
T Consensus 80 ~~~t~~-n~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~v 156 (184)
T PF13848_consen 80 PELTPE-NFEKLFSSPKP--PVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALV 156 (184)
T ss_dssp EEESTT-HHHHHHSTSSE--EEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEE
T ss_pred cccchh-hHHHHhcCCCc--eEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEE
Confidence 999854 67777765421 244445432 2 2567788898887777666322 45678889998 679999
Q ss_pred EEcCCCCCc-ccccCCCChHHHHHHHHh
Q 013240 223 ALQPSYNEH-NIFYGPFDEEFLEEFIKQ 249 (447)
Q Consensus 223 ~~~~~~~~~-~~~~g~~~~~~i~~fI~~ 249 (447)
++....+.. ..+.+.++.+.|..|+++
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 157 IFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred EEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 998654432 224688999999999974
No 85
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.15 E-value=6.4e-10 Score=97.09 Aligned_cols=88 Identities=22% Similarity=0.322 Sum_probs=68.0
Q ss_pred HccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEe-----------------------CccchhhhhhC
Q 013240 57 ISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD-----------------------ADKYSRLASKQ 113 (447)
Q Consensus 57 ~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd-----------------------~~~~~~l~~~~ 113 (447)
..++++++|.||++||++|+...|.+.++++. + +.+..|+ ++.+.++.+.|
T Consensus 60 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~----~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~ 133 (173)
T TIGR00385 60 FIQGKPVLLNVWASWCPPCRAEHPYLNELAKD--G----LPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDL 133 (173)
T ss_pred hcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc--C----CEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhc
Confidence 34578999999999999999999999888652 1 3334443 34455677889
Q ss_pred CCccccEEEEE-eCCeeEE-ecCCCCHHHHHHHHHHhcC
Q 013240 114 EIDAFPTLKIF-MHGIPTE-YYGPRKAELLVRYLKKFVA 150 (447)
Q Consensus 114 ~i~~~Ptl~~~-~~g~~~~-y~g~~~~~~i~~fi~~~~~ 150 (447)
++.++|+.+++ ++|+... +.|..+.+++.+++.+++.
T Consensus 134 ~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 134 GVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 99999976666 5687664 7899999999999988753
No 86
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.12 E-value=3.9e-10 Score=91.74 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=64.4
Q ss_pred ChhhHHHhHccCCeEEEEEECCCChhhhhhhHH-HH--HHHHHhhcCCCCeEEEEEeCccchhhhhh--------CCCcc
Q 013240 49 DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQ-LD--EAAPILAKLKEPIVIAKVDADKYSRLASK--------QEIDA 117 (447)
Q Consensus 49 ~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~-~~--~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~--------~~i~~ 117 (447)
+++.+..+.++++++||.|+++||+.|+.+.+. |. ++++.++. .+.+.+||.++.+++++. |++.|
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~---~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G 80 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE---NFVPIKVDREERPDVDKIYMNAAQAMTGQGG 80 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC---CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCC
Confidence 467788889999999999999999999999873 33 45665543 388999999998888763 58999
Q ss_pred ccEEEEEeC-CeeE
Q 013240 118 FPTLKIFMH-GIPT 130 (447)
Q Consensus 118 ~Ptl~~~~~-g~~~ 130 (447)
+|+++++.. |+++
T Consensus 81 ~Pt~vfl~~~G~~~ 94 (124)
T cd02955 81 WPLNVFLTPDLKPF 94 (124)
T ss_pred CCEEEEECCCCCEE
Confidence 999999965 7665
No 87
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.10 E-value=3.2e-11 Score=104.83 Aligned_cols=103 Identities=26% Similarity=0.505 Sum_probs=94.3
Q ss_pred CCeEEeChhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEE
Q 013240 43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (447)
Q Consensus 43 ~~v~~l~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~ 122 (447)
..+..++++|....++ .-|+++|++|||+.|+.+.|.|...|..-.+. .|.++.||.+.++-|.-+|-+...|||+
T Consensus 24 s~~~~~~eenw~~~l~--gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL--~v~va~VDvt~npgLsGRF~vtaLptIY 99 (248)
T KOG0913|consen 24 SKLTRIDEENWKELLT--GEWMIEFGAPWCPSCSDLIPHLENFATVSLDL--GVKVAKVDVTTNPGLSGRFLVTALPTIY 99 (248)
T ss_pred ceeEEecccchhhhhc--hHHHHHhcCCCCccccchHHHHhccCCccCCC--ceeEEEEEEEeccccceeeEEEecceEE
Confidence 4899999999999986 57999999999999999999999999865554 4999999999999999999999999999
Q ss_pred EEeCCeeEEecCCCCHHHHHHHHHHhc
Q 013240 123 IFMHGIPTEYYGPRKAELLVRYLKKFV 149 (447)
Q Consensus 123 ~~~~g~~~~y~g~~~~~~i~~fi~~~~ 149 (447)
...+|...+|.|.|+..++++|+...-
T Consensus 100 HvkDGeFrrysgaRdk~dfisf~~~r~ 126 (248)
T KOG0913|consen 100 HVKDGEFRRYSGARDKNDFISFEEHRE 126 (248)
T ss_pred EeeccccccccCcccchhHHHHHHhhh
Confidence 999999999999999999999986654
No 88
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.09 E-value=1.7e-09 Score=87.82 Aligned_cols=107 Identities=14% Similarity=0.135 Sum_probs=90.6
Q ss_pred eEEeChhhHHHhHccCCeEEEEEECC--CChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEE
Q 013240 45 VIELDESNFDSAISSFDYILVDFYAP--WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (447)
Q Consensus 45 v~~l~~~~f~~~~~~~~~~lV~f~~~--~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~ 122 (447)
-..++..+++..+...+..++.|-.+ .++.+....=.+.++++++.+ .++.+++||++.+++++.+|||.++||++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~--~~v~~akVDiD~~~~LA~~fgV~siPTLl 96 (132)
T PRK11509 19 WTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD--YTWQVAIADLEQSEAIGDRFGVFRFPATL 96 (132)
T ss_pred CCccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC--CceEEEEEECCCCHHHHHHcCCccCCEEE
Confidence 34456688999998877777776543 578888888999999998853 34999999999999999999999999999
Q ss_pred EEeCCeeEE-ecCCCCHHHHHHHHHHhcCCCc
Q 013240 123 IFMHGIPTE-YYGPRKAELLVRYLKKFVAPDV 153 (447)
Q Consensus 123 ~~~~g~~~~-y~g~~~~~~i~~fi~~~~~~~v 153 (447)
+|++|+.+. ..|.++.+.+.+|+.+++..+.
T Consensus 97 ~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 97 VFTGGNYRGVLNGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred EEECCEEEEEEeCcCCHHHHHHHHHHHhcCcC
Confidence 999999886 8899999999999999887643
No 89
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=6.3e-10 Score=95.34 Aligned_cols=90 Identities=22% Similarity=0.435 Sum_probs=77.8
Q ss_pred ccCCCCeEEe-ChhhHHHhHc--cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCC
Q 013240 39 FKIDGKVIEL-DESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEI 115 (447)
Q Consensus 39 ~~~~~~v~~l-~~~~f~~~~~--~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i 115 (447)
+...+.+..+ +++.+++.+. ....|+|.|++.|.+.|+++.|.|.+++.++.. +...||+||....++.+.+|+|
T Consensus 120 y~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~--~~lkFGkvDiGrfpd~a~kfri 197 (265)
T KOG0914|consen 120 YSGPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN--NLLKFGKVDIGRFPDVAAKFRI 197 (265)
T ss_pred cCCchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCC--CCCcccceeeccCcChHHheee
Confidence 4455788899 7788888884 446999999999999999999999999988764 4599999999999999999987
Q ss_pred c------cccEEEEEeCCeeE
Q 013240 116 D------AFPTLKIFMHGIPT 130 (447)
Q Consensus 116 ~------~~Ptl~~~~~g~~~ 130 (447)
+ ..||+++|.+|+.+
T Consensus 198 s~s~~srQLPT~ilFq~gkE~ 218 (265)
T KOG0914|consen 198 SLSPGSRQLPTYILFQKGKEV 218 (265)
T ss_pred ccCcccccCCeEEEEccchhh
Confidence 6 58999999999654
No 90
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.03 E-value=1.3e-09 Score=90.54 Aligned_cols=73 Identities=27% Similarity=0.395 Sum_probs=59.1
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccc------------------------hhhhhhCC
Q 013240 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY------------------------SRLASKQE 114 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~------------------------~~l~~~~~ 114 (447)
.+++++|.||++||++|+...|.+.++.+.+.+.+..+.+..|+.+.. ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 458999999999999999999999999988876434566666666533 45788999
Q ss_pred CccccEEEEEe-CCeeEE
Q 013240 115 IDAFPTLKIFM-HGIPTE 131 (447)
Q Consensus 115 i~~~Ptl~~~~-~g~~~~ 131 (447)
+.++|+++++. +|+.+.
T Consensus 97 v~~~P~~~lid~~G~i~~ 114 (131)
T cd03009 97 IEGIPTLIILDADGEVVT 114 (131)
T ss_pred CCCCCEEEEECCCCCEEc
Confidence 99999999997 576553
No 91
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.01 E-value=9.5e-10 Score=79.79 Aligned_cols=57 Identities=21% Similarity=0.364 Sum_probs=50.7
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEE
Q 013240 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123 (447)
Q Consensus 63 ~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~ 123 (447)
-++.|+++||++|+.+.+.+++++... +++.+..+|.++++++++++++.++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~----~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN----PNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC----CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 367899999999999999999997642 349999999999999999999999999865
No 92
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.99 E-value=3.1e-09 Score=98.95 Aligned_cols=87 Identities=21% Similarity=0.190 Sum_probs=70.5
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc-----------chhhhhhCCCccccEEEEEeC-
Q 013240 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-----------YSRLASKQEIDAFPTLKIFMH- 126 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~-----------~~~l~~~~~i~~~Ptl~~~~~- 126 (447)
.++++||.||++||++|+...|.+.++++.+. +.+..|+.+. +..+++++||.++|+++++.+
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~ 239 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPD 239 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECC
Confidence 35899999999999999999999999998752 4455555543 457899999999999999986
Q ss_pred Cee-EE-ecCCCCHHHHHHHHHHhcC
Q 013240 127 GIP-TE-YYGPRKAELLVRYLKKFVA 150 (447)
Q Consensus 127 g~~-~~-y~g~~~~~~i~~fi~~~~~ 150 (447)
|+. .. ..|..+.+.|.+.+.....
T Consensus 240 ~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 240 PNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 543 33 6799999999998887655
No 93
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.99 E-value=2.9e-09 Score=87.46 Aligned_cols=93 Identities=24% Similarity=0.294 Sum_probs=68.0
Q ss_pred EeChhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEE--------------------EeCccc
Q 013240 47 ELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK--------------------VDADKY 106 (447)
Q Consensus 47 ~l~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~--------------------Vd~~~~ 106 (447)
.++.+.+.......++++|.||++||++|+...|.+.++++.+.- +.+.. +-++.+
T Consensus 7 ~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~----i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (123)
T cd03011 7 TLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYPV----VSVALRSGDDGAVARFMQKKGYGFPVINDPD 82 (123)
T ss_pred cCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCCE----EEEEccCCCHHHHHHHHHHcCCCccEEECCC
Confidence 344444555444568999999999999999999999998876321 22221 112455
Q ss_pred hhhhhhCCCccccEEEEEeCCeeE-EecCCCCHHHHHH
Q 013240 107 SRLASKQEIDAFPTLKIFMHGIPT-EYYGPRKAELLVR 143 (447)
Q Consensus 107 ~~l~~~~~i~~~Ptl~~~~~g~~~-~y~g~~~~~~i~~ 143 (447)
.++++.|+|.++|+++++.+|... .+.|..+.++|.+
T Consensus 83 ~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~ 120 (123)
T cd03011 83 GVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRL 120 (123)
T ss_pred cHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHh
Confidence 689999999999999999875533 3788888888764
No 94
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.95 E-value=3.3e-09 Score=88.29 Aligned_cols=75 Identities=23% Similarity=0.351 Sum_probs=59.1
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccch-------------------------hhhhhC
Q 013240 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-------------------------RLASKQ 113 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~-------------------------~l~~~~ 113 (447)
++++++|.||++||++|+...|.+.++++.+++....+.+..|+++... .+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 4589999999999999999999999999888754234777777765432 456779
Q ss_pred CCccccEEEEEe-CCeeEEec
Q 013240 114 EIDAFPTLKIFM-HGIPTEYY 133 (447)
Q Consensus 114 ~i~~~Ptl~~~~-~g~~~~y~ 133 (447)
+|.++|+++++. +|+.+...
T Consensus 96 ~v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred CCCCCCEEEEECCCCCEEchh
Confidence 999999999996 46655433
No 95
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.94 E-value=5.7e-09 Score=86.22 Aligned_cols=78 Identities=22% Similarity=0.343 Sum_probs=60.9
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEe-----------------------CccchhhhhhCCC
Q 013240 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD-----------------------ADKYSRLASKQEI 115 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd-----------------------~~~~~~l~~~~~i 115 (447)
++++++|.||++||++|+...|.+.++++.. + +.+..|+ ++.+.++++.|++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~----~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v 98 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG-R----VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGV 98 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-C----cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCC
Confidence 4689999999999999999999999998764 1 4444444 4566788999999
Q ss_pred ccccEEEEE-eCCeeEE-ecCCCCHHHH
Q 013240 116 DAFPTLKIF-MHGIPTE-YYGPRKAELL 141 (447)
Q Consensus 116 ~~~Ptl~~~-~~g~~~~-y~g~~~~~~i 141 (447)
.++|+.+++ ++|+... +.|..+.+.|
T Consensus 99 ~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 99 YGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCCeEEEECCCceEEEEEeccCChHhc
Confidence 999966666 5787664 8898877654
No 96
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.91 E-value=9.1e-09 Score=78.80 Aligned_cols=76 Identities=14% Similarity=0.200 Sum_probs=62.4
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCCeeEEecCCCCHH
Q 013240 60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAE 139 (447)
Q Consensus 60 ~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~ 139 (447)
++.-+..|+++||++|....+.+.++++.. +++.+..+|.++.++++.+|+|.++|++++ +|+. .+.|..+.+
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~----~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~-~~~G~~~~~ 84 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLN----PNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL-FGFGRMTLE 84 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHC----CCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE-EEeCCCCHH
Confidence 356688899999999999999999999754 249999999999999999999999999975 6754 346766655
Q ss_pred HHH
Q 013240 140 LLV 142 (447)
Q Consensus 140 ~i~ 142 (447)
+++
T Consensus 85 e~~ 87 (89)
T cd03026 85 EIL 87 (89)
T ss_pred HHh
Confidence 543
No 97
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.90 E-value=8.3e-09 Score=83.04 Aligned_cols=73 Identities=25% Similarity=0.464 Sum_probs=62.7
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccc-----------------------hhhhhhCCCc
Q 013240 60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-----------------------SRLASKQEID 116 (447)
Q Consensus 60 ~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~-----------------------~~l~~~~~i~ 116 (447)
+++++|.||++||++|+...+.+.++...+.+ ..+.++.|+++.+ ..+++.|++.
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKD--DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVR 96 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCC--CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcC
Confidence 68999999999999999999999999988752 3499999999886 7899999999
Q ss_pred cccEEEEEe-CCeeEE-ecC
Q 013240 117 AFPTLKIFM-HGIPTE-YYG 134 (447)
Q Consensus 117 ~~Ptl~~~~-~g~~~~-y~g 134 (447)
++|+++++. +|+.+. |.|
T Consensus 97 ~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 97 GLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ccceEEEECCCCcEEEEecC
Confidence 999999996 465553 544
No 98
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.89 E-value=5.6e-08 Score=83.78 Aligned_cols=83 Identities=16% Similarity=0.175 Sum_probs=65.5
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccc-------------hhhhhhCCC--ccccEEEEEe-CC
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-------------SRLASKQEI--DAFPTLKIFM-HG 127 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~-------------~~l~~~~~i--~~~Ptl~~~~-~g 127 (447)
+|.||++||++|++..|.+.++++++ + +.+..|+.+.. ..+.+.|++ .++|+.+++. +|
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G 147 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-G----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNT 147 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-C----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCC
Confidence 88899999999999999999999875 2 55555665532 235667885 6999999995 57
Q ss_pred eeE--EecCCCCHHHHHHHHHHhcCC
Q 013240 128 IPT--EYYGPRKAELLVRYLKKFVAP 151 (447)
Q Consensus 128 ~~~--~y~g~~~~~~i~~fi~~~~~~ 151 (447)
+.. .+.|..+.+++.+.+.+.+.-
T Consensus 148 ~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 148 LEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred cEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 664 489999999998888877654
No 99
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.87 E-value=1.7e-08 Score=78.74 Aligned_cols=66 Identities=30% Similarity=0.493 Sum_probs=54.4
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccch-------------------------hhhhhCC
Q 013240 60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-------------------------RLASKQE 114 (447)
Q Consensus 60 ~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~-------------------------~l~~~~~ 114 (447)
+++++|.||++||++|++..|.+.++.+.+++ +.++.+..|+++... .+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 47899999999999999999999999999985 556999999987542 3677789
Q ss_pred CccccEEEEEeC
Q 013240 115 IDAFPTLKIFMH 126 (447)
Q Consensus 115 i~~~Ptl~~~~~ 126 (447)
|.++|+++++..
T Consensus 80 i~~iP~~~lld~ 91 (95)
T PF13905_consen 80 INGIPTLVLLDP 91 (95)
T ss_dssp -TSSSEEEEEET
T ss_pred CCcCCEEEEECC
Confidence 999999999876
No 100
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.87 E-value=3.1e-08 Score=79.17 Aligned_cols=101 Identities=17% Similarity=0.226 Sum_probs=77.4
Q ss_pred cccChhhHHhhhcCCCcEEEEEEeC---CChhhHHHHHHHHHHHHHhCC-C-ceEEEEeccchHhHHhhcCCCCCCC--C
Q 013240 256 VPINQDTLNLLKDDKRKIVLAIVED---ETEEKSQKLVTTLKAAASANR-E-LVFCYVGIKQFADFADTFEANKKSK--L 328 (447)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~vl~~~~~---~~~~~~~~~~~~l~~~a~~~~-~-~~f~~vd~~~~~~~~~~~~i~~~~~--~ 328 (447)
.++|.++...+. ..|++++++.- .+.+..+.+.+.++++|+.++ + +.|+|+|..++...++.||+ +..+ .
T Consensus 2 ~~~~~en~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl-~~~~~~~ 78 (111)
T cd03073 2 GHRTKDNRAQFT--KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGL-DFSGGEK 78 (111)
T ss_pred CeeccchHHHhc--cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCC-CcccCCC
Confidence 466777777774 35556555432 245667889999999999999 5 99999999988889999999 5556 9
Q ss_pred ceEEEEeCCc-cceecCCCCCCCccc-chhHHHHHHHHHh
Q 013240 329 PKMVVWDGNE-NYLTVIGSESIDEED-QGSQISRFLEGYR 366 (447)
Q Consensus 329 P~vvi~~~~~-~y~~~~g~~~~~~~~-~~~~i~~Fl~~~~ 366 (447)
|+++|.+.++ +|. + .+++ +.++|.+|+++|+
T Consensus 79 P~~~i~~~~~~KY~-~------~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 79 PVVAIRTAKGKKYV-M------EEEFSDVDALEEFLEDFF 111 (111)
T ss_pred CEEEEEeCCCCccC-C------CcccCCHHHHHHHHHHhC
Confidence 9999999754 443 3 3446 7899999999874
No 101
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.84 E-value=1.1e-07 Score=74.70 Aligned_cols=106 Identities=25% Similarity=0.449 Sum_probs=83.7
Q ss_pred CCeEEeChhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCc-----cchhhhhhCCC--
Q 013240 43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-----KYSRLASKQEI-- 115 (447)
Q Consensus 43 ~~v~~l~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~-----~~~~l~~~~~i-- 115 (447)
...+.|++-+|++++...+.+||.|-... +--.-+.+|.++|.+.....+.+.+|.|... +|.+|+++|++
T Consensus 4 ~G~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 4 KGCVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TTSEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred CceeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 46789999999999999999999997544 3446678899999554555678999999985 46899999999
Q ss_pred ccccEEEEEeCC--eeEEe--cCCCCHHHHHHHHHHhcC
Q 013240 116 DAFPTLKIFMHG--IPTEY--YGPRKAELLVRYLKKFVA 150 (447)
Q Consensus 116 ~~~Ptl~~~~~g--~~~~y--~g~~~~~~i~~fi~~~~~ 150 (447)
..||.+++|..| .++.| .|+.+.+.|..|++.+.+
T Consensus 82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 568999999964 67888 999999999999998754
No 102
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.83 E-value=3.6e-08 Score=78.12 Aligned_cols=97 Identities=20% Similarity=0.378 Sum_probs=74.5
Q ss_pred hHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHhHHhhcCCCCCCCCceEEEEeCC--c
Q 013240 262 TLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN--E 338 (447)
Q Consensus 262 ~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~~--~ 338 (447)
++......+.|++++|... +....+.+.+.++++|+++++ +.|+|+|+++++++++.+|+ ...+.|++++++.. .
T Consensus 4 ~~~~~~~~~~~~~~~f~~~-~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i-~~~~~P~~~~~~~~~~~ 81 (103)
T cd02982 4 TFFNYEESGKPLLVLFYNK-DDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGL-KEEDLPVIAIINLSDGK 81 (103)
T ss_pred HHhhhhhcCCCEEEEEEcC-ChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCC-ChhhCCEEEEEeccccc
Confidence 4444444467888877753 455668889999999999987 99999999999999999999 44589999999983 3
Q ss_pred cceecCCCCCCCcccchhHHHHHHHHHh
Q 013240 339 NYLTVIGSESIDEEDQGSQISRFLEGYR 366 (447)
Q Consensus 339 ~y~~~~g~~~~~~~~~~~~i~~Fl~~~~ 366 (447)
+|... .+..+.++|.+|+++++
T Consensus 82 k~~~~------~~~~~~~~l~~fi~~~~ 103 (103)
T cd02982 82 KYLMP------EEELTAESLEEFVEDFL 103 (103)
T ss_pred ccCCC------ccccCHHHHHHHHHhhC
Confidence 44432 22357889999999874
No 103
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.83 E-value=2.7e-08 Score=83.24 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=59.2
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcC-----CCCeEEEEEeCccc-------------------------hh
Q 013240 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKL-----KEPIVIAKVDADKY-------------------------SR 108 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~-----~~~v~~~~Vd~~~~-------------------------~~ 108 (447)
++++++|+|||+||+.|+...|.+.++.+.+++. ..++.+..|+.+.+ ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 4689999999999999999999999998877652 22477888886532 24
Q ss_pred hhhhCCCccccEEEEEeC-CeeEEec
Q 013240 109 LASKQEIDAFPTLKIFMH-GIPTEYY 133 (447)
Q Consensus 109 l~~~~~i~~~Ptl~~~~~-g~~~~y~ 133 (447)
++++|++.++|+++++.. |+.+.-.
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~~ 129 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAAN 129 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEeeC
Confidence 777899999999999974 6665443
No 104
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.79 E-value=4e-08 Score=79.43 Aligned_cols=93 Identities=18% Similarity=0.233 Sum_probs=73.2
Q ss_pred HHhHccCCeEEEEEECCCChhhhhhhH-HHH--HHHHHhhcCCCCeEEEEEeCc--cchhhhhhCCCccccEEEEEeC--
Q 013240 54 DSAISSFDYILVDFYAPWCGHCKRLAP-QLD--EAAPILAKLKEPIVIAKVDAD--KYSRLASKQEIDAFPTLKIFMH-- 126 (447)
Q Consensus 54 ~~~~~~~~~~lV~f~~~~C~~C~~~~p-~~~--~~a~~l~~~~~~v~~~~Vd~~--~~~~l~~~~~i~~~Ptl~~~~~-- 126 (447)
..+.+++++++|+||++||+.|+.+.. .|. ++.+.++. ...+..+|.+ +..++++.|++.++|++.++.+
T Consensus 11 ~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~---~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~ 87 (114)
T cd02958 11 QEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE---NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRT 87 (114)
T ss_pred HHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh---CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCcc
Confidence 334467899999999999999999876 453 45555544 3777778876 4678999999999999999975
Q ss_pred CeeEE-ecCCCCHHHHHHHHHHhc
Q 013240 127 GIPTE-YYGPRKAELLVRYLKKFV 149 (447)
Q Consensus 127 g~~~~-y~g~~~~~~i~~fi~~~~ 149 (447)
|+.+. ..|..+++.+.+-+++..
T Consensus 88 g~~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 88 GEVLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred CcEeEEEcCCCCHHHHHHHHHHHH
Confidence 66654 799999999988887754
No 105
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.72 E-value=2.7e-07 Score=81.62 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=58.1
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEe-------------C-----ccchhhhhhCCCccccE
Q 013240 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD-------------A-----DKYSRLASKQEIDAFPT 120 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd-------------~-----~~~~~l~~~~~i~~~Pt 120 (447)
.+++++|.||++||+.|+...|.+.++.+.. +.++.+...+ . ....++++.|++.+.|+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~ 149 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPY 149 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc---CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccce
Confidence 5689999999999999999999999987642 2224333311 1 11346788899999999
Q ss_pred EEEEeCCeeEEecCC-CCHHHHHHHHHH
Q 013240 121 LKIFMHGIPTEYYGP-RKAELLVRYLKK 147 (447)
Q Consensus 121 l~~~~~g~~~~y~g~-~~~~~i~~fi~~ 147 (447)
.+++.....+.+.|. .+.+++.+.++.
T Consensus 150 ~~lID~~G~I~~~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 150 GVLLDQDGKIRAKGLTNTREHLESLLEA 177 (189)
T ss_pred EEEECCCCeEEEccCCCCHHHHHHHHHH
Confidence 888865334445554 344555555543
No 106
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.72 E-value=4.6e-08 Score=73.96 Aligned_cols=70 Identities=31% Similarity=0.484 Sum_probs=52.4
Q ss_pred hHHHhHccCCeEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEe
Q 013240 52 NFDSAISSFDYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFM 125 (447)
Q Consensus 52 ~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~---~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~ 125 (447)
.+.++.++++|+||.|+++||+.|+.+...+ .++.+.+.+ ++.+..||.+........ ...++|+++++.
T Consensus 9 al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~---~fv~v~vd~~~~~~~~~~-~~~~~P~~~~ld 81 (82)
T PF13899_consen 9 ALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK---NFVLVKVDVDDEDPNAQF-DRQGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH---CSEEEEEETTTHHHHHHH-HHCSSSEEEEEE
T ss_pred HHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC---CEEEEEEEcCCCChhHHh-CCccCCEEEEeC
Confidence 3445557889999999999999999999887 445554444 388999999766554322 226799999986
No 107
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.72 E-value=7.5e-08 Score=95.67 Aligned_cols=101 Identities=21% Similarity=0.334 Sum_probs=79.1
Q ss_pred EEeChh-hHHHhHccCC--eEEEEEECCCChhhhhhhHHHHH-HHHHhhcCCCCeEEEEEeCccc----hhhhhhCCCcc
Q 013240 46 IELDES-NFDSAISSFD--YILVDFYAPWCGHCKRLAPQLDE-AAPILAKLKEPIVIAKVDADKY----SRLASKQEIDA 117 (447)
Q Consensus 46 ~~l~~~-~f~~~~~~~~--~~lV~f~~~~C~~C~~~~p~~~~-~a~~l~~~~~~v~~~~Vd~~~~----~~l~~~~~i~~ 117 (447)
..++.. .+++++.+++ |++++|||+||-.||.+++.--. .....+ -.++...++|.+++ .++-++|++-+
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~--~~~~vlLqaDvT~~~p~~~~lLk~~~~~G 534 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQA--LQDVVLLQADVTANDPAITALLKRLGVFG 534 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHh--cCCeEEEEeeecCCCHHHHHHHHHcCCCC
Confidence 556555 8899997776 99999999999999999887542 222222 23488999999764 67788999999
Q ss_pred ccEEEEEe-CCeeE-EecCCCCHHHHHHHHHHh
Q 013240 118 FPTLKIFM-HGIPT-EYYGPRKAELLVRYLKKF 148 (447)
Q Consensus 118 ~Ptl~~~~-~g~~~-~y~g~~~~~~i~~fi~~~ 148 (447)
.|++++|. +|+.. .-.|..+++.+.+++++.
T Consensus 535 ~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 535 VPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 99999998 45433 378999999999998875
No 108
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.72 E-value=2e-07 Score=80.83 Aligned_cols=80 Identities=11% Similarity=0.020 Sum_probs=59.4
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEE------EEEeCcc---------------------------
Q 013240 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVI------AKVDADK--------------------------- 105 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~------~~Vd~~~--------------------------- 105 (447)
..++.+|.|||.||+.|+.-+|.+.+++.. + +.+ ..||.++
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~----~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vll 131 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA--K----FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVL 131 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc--C----CCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEE
Confidence 479999999999999999999999999642 2 333 4445443
Q ss_pred --chhhhhhCCCccccEE-EEEe-CCeeEE-ecCCCCHHHHHHH
Q 013240 106 --YSRLASKQEIDAFPTL-KIFM-HGIPTE-YYGPRKAELLVRY 144 (447)
Q Consensus 106 --~~~l~~~~~i~~~Ptl-~~~~-~g~~~~-y~g~~~~~~i~~f 144 (447)
+..+...|++.+.|+- +++. +|+... +.|..+.+++.+.
T Consensus 132 D~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~ 175 (184)
T TIGR01626 132 DDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTV 175 (184)
T ss_pred CCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHH
Confidence 2345667899999777 5654 477665 8999988887663
No 109
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=4.1e-07 Score=74.20 Aligned_cols=91 Identities=22% Similarity=0.278 Sum_probs=67.4
Q ss_pred HHHhHccCCeEEEEEECCCChhhhhhhHHHHHH---HHHhhcCCCCeEEEEEeCcc----------------chhhhhhC
Q 013240 53 FDSAISSFDYILVDFYAPWCGHCKRLAPQLDEA---APILAKLKEPIVIAKVDADK----------------YSRLASKQ 113 (447)
Q Consensus 53 f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~---a~~l~~~~~~v~~~~Vd~~~----------------~~~l~~~~ 113 (447)
..++.-.+++.+++|-++.|..|.++....... .+.+.+ ++.+..++.+. .++|++.|
T Consensus 35 ~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~---hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf 111 (182)
T COG2143 35 NKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE---HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKF 111 (182)
T ss_pred HHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh---CeEEEEEEeccCcceEeecCceeeeecHHHHHHHh
Confidence 445556779999999999999999998877644 333333 47777777642 25899999
Q ss_pred CCccccEEEEEeC-CeeEE-ecCCCCHHHHHHHHH
Q 013240 114 EIDAFPTLKIFMH-GIPTE-YYGPRKAELLVRYLK 146 (447)
Q Consensus 114 ~i~~~Ptl~~~~~-g~~~~-y~g~~~~~~i~~fi~ 146 (447)
+++++|++++|.+ |+.+- -.|-..+++...-++
T Consensus 112 ~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 112 AVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred ccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 9999999999976 66664 477777776554433
No 110
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.68 E-value=9.8e-08 Score=105.09 Aligned_cols=90 Identities=17% Similarity=0.293 Sum_probs=74.4
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeC---------------------------ccchhhhh
Q 013240 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA---------------------------DKYSRLAS 111 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~---------------------------~~~~~l~~ 111 (447)
+.++++|+|||+||++|+...|.+.++++++++. .+.+..|.+ +.+.++.+
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~--~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~ 496 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ--PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWR 496 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC--CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHH
Confidence 4689999999999999999999999999988653 366666643 23446778
Q ss_pred hCCCccccEEEEE-eCCeeEE-ecCCCCHHHHHHHHHHhcC
Q 013240 112 KQEIDAFPTLKIF-MHGIPTE-YYGPRKAELLVRYLKKFVA 150 (447)
Q Consensus 112 ~~~i~~~Ptl~~~-~~g~~~~-y~g~~~~~~i~~fi~~~~~ 150 (447)
+|+|.++|+++++ ++|+.+. +.|....+.+.+++...+.
T Consensus 497 ~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 497 ELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred hcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 9999999999999 5787764 8899999999999988754
No 111
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.62 E-value=1.1e-07 Score=76.87 Aligned_cols=60 Identities=25% Similarity=0.393 Sum_probs=44.5
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEE---eCccchhhhhhCCCccccEE
Q 013240 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV---DADKYSRLASKQEIDAFPTL 121 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~V---d~~~~~~l~~~~~i~~~Ptl 121 (447)
+.++++|.||++||++|+...|.+.++++.+++ .+.+..+ +.++..++++++++..+|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD---WLDVVLASDGEKAEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC---CcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence 468999999999999999999999999877643 2544445 22344556777777767764
No 112
>smart00594 UAS UAS domain.
Probab=98.59 E-value=2.7e-07 Score=75.48 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=69.2
Q ss_pred hhHHHhH----ccCCeEEEEEECCCChhhhhhhHH-HH--HHHHHhhcCCCCeEEEEEeCc--cchhhhhhCCCccccEE
Q 013240 51 SNFDSAI----SSFDYILVDFYAPWCGHCKRLAPQ-LD--EAAPILAKLKEPIVIAKVDAD--KYSRLASKQEIDAFPTL 121 (447)
Q Consensus 51 ~~f~~~~----~~~~~~lV~f~~~~C~~C~~~~p~-~~--~~a~~l~~~~~~v~~~~Vd~~--~~~~l~~~~~i~~~Ptl 121 (447)
.+|++++ ++.++++|+|+++||+.|+.+... |. ++.+.+++ .+.+..+|.+ +..+++..|+++++|++
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~~eg~~l~~~~~~~~~P~~ 90 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDTSEGQRVSQFYKLDSFPYV 90 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCChhHHHHHHhcCcCCCCEE
Confidence 3455544 677899999999999999998765 32 44555543 3777777764 45789999999999999
Q ss_pred EEEeC-C--e---eE-EecCCCCHHHHHHHH
Q 013240 122 KIFMH-G--I---PT-EYYGPRKAELLVRYL 145 (447)
Q Consensus 122 ~~~~~-g--~---~~-~y~g~~~~~~i~~fi 145 (447)
.++.. | . .+ ...|..+++++++++
T Consensus 91 ~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 91 AIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 99965 3 1 22 378999999998876
No 113
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.58 E-value=1.5e-07 Score=76.57 Aligned_cols=72 Identities=13% Similarity=0.120 Sum_probs=47.6
Q ss_pred HHHhHccCCeEEEEEECCCChhhhhhhHHHH---HHHHHhhcCCCCeEEEEEeCccc-hhhhhhCCCccccEEEEEeC-C
Q 013240 53 FDSAISSFDYILVDFYAPWCGHCKRLAPQLD---EAAPILAKLKEPIVIAKVDADKY-SRLASKQEIDAFPTLKIFMH-G 127 (447)
Q Consensus 53 f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~---~~a~~l~~~~~~v~~~~Vd~~~~-~~l~~~~~i~~~Ptl~~~~~-g 127 (447)
+..+-+++++++|.||++||++|+.+....- ++++.+++ ++....++.+.. ..+. ..+ .++||++++.. |
T Consensus 16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~---~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~g 90 (130)
T cd02960 16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE---DFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPSL 90 (130)
T ss_pred HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh---CeEEEEEEeccCCCCcC-ccC-cccCeEEEECCCC
Confidence 3344478899999999999999999998753 34444432 255556665422 1121 234 68999999965 5
Q ss_pred ee
Q 013240 128 IP 129 (447)
Q Consensus 128 ~~ 129 (447)
+.
T Consensus 91 ~v 92 (130)
T cd02960 91 TV 92 (130)
T ss_pred CC
Confidence 43
No 114
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.52 E-value=5.4e-07 Score=74.20 Aligned_cols=74 Identities=18% Similarity=0.251 Sum_probs=57.1
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCc---------------------------cchhhhh
Q 013240 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD---------------------------KYSRLAS 111 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~---------------------------~~~~l~~ 111 (447)
+.++++|.||+.||+.|....|.+.++.+.++.. .+.+..|++. ....+++
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~--~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~ 99 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD--GLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWR 99 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC--CeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHH
Confidence 4589999999999999999999999999988753 3767767541 1234667
Q ss_pred hCCCccccEEEEEe-CCeeEE-ecC
Q 013240 112 KQEIDAFPTLKIFM-HGIPTE-YYG 134 (447)
Q Consensus 112 ~~~i~~~Ptl~~~~-~g~~~~-y~g 134 (447)
.|++.++|+.+++. +|+... +.|
T Consensus 100 ~~~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 100 AYGNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred HhCCCcCCeEEEECCCCcEEEEEec
Confidence 78999999999995 466553 444
No 115
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=7.2e-07 Score=81.34 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=92.3
Q ss_pred cCCCCeEEeChhhHHHhHccC---CeEEEEEECC----CChhhhhhhHHHHHHHHHhhcC-----CCCeEEEEEeCccch
Q 013240 40 KIDGKVIELDESNFDSAISSF---DYILVDFYAP----WCGHCKRLAPQLDEAAPILAKL-----KEPIVIAKVDADKYS 107 (447)
Q Consensus 40 ~~~~~v~~l~~~~f~~~~~~~---~~~lV~f~~~----~C~~C~~~~p~~~~~a~~l~~~-----~~~v~~~~Vd~~~~~ 107 (447)
+.+..|+.+|+.+|..++... -..+|+|+|. .|.-|+.+..+|.-+|...... +.++-|..||.++.+
T Consensus 37 ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p 116 (331)
T KOG2603|consen 37 TSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP 116 (331)
T ss_pred cCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH
Confidence 567899999999999999532 2567888864 5999999999999999887643 237999999999999
Q ss_pred hhhhhCCCccccEEEEEeC--CeeE-----E-ecCCCCHHHHHHHHHHhcCCCce
Q 013240 108 RLASKQEIDAFPTLKIFMH--GIPT-----E-YYGPRKAELLVRYLKKFVAPDVS 154 (447)
Q Consensus 108 ~l~~~~~i~~~Ptl~~~~~--g~~~-----~-y~g~~~~~~i~~fi~~~~~~~v~ 154 (447)
++.+.++.+..|++++|.+ |.+. + ++-...+|++.+|+...+.-.+.
T Consensus 117 ~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~ 171 (331)
T KOG2603|consen 117 QVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNVR 171 (331)
T ss_pred HHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhheee
Confidence 9999999999999999955 3222 1 33334599999999988765554
No 116
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.48 E-value=2.1e-06 Score=77.94 Aligned_cols=90 Identities=13% Similarity=0.088 Sum_probs=66.8
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc-----------chhhh-hhCCC-----------
Q 013240 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-----------YSRLA-SKQEI----------- 115 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~-----------~~~l~-~~~~i----------- 115 (447)
.+++++|.||++||+.|....|.+.++.+.+++.+ +.+..|+|+. ..+++ +++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G--v~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~ 175 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVN 175 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC--cEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCC
Confidence 45899999999999999999999999999887643 8888888841 12232 33322
Q ss_pred -----------------------ccccEEEEE-eCCeeEE-ecCCCCHHHHHHHHHHhcC
Q 013240 116 -----------------------DAFPTLKIF-MHGIPTE-YYGPRKAELLVRYLKKFVA 150 (447)
Q Consensus 116 -----------------------~~~Ptl~~~-~~g~~~~-y~g~~~~~~i~~fi~~~~~ 150 (447)
...|+.+++ ++|+.+. |.|..+.++|...+++++.
T Consensus 176 G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 176 GPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred cchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 123666776 4577665 8999999999888887753
No 117
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.48 E-value=7.9e-07 Score=65.38 Aligned_cols=68 Identities=24% Similarity=0.360 Sum_probs=52.5
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchh----hhhhCCCccccEEEEEeCCeeEEecCCCCHH
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR----LASKQEIDAFPTLKIFMHGIPTEYYGPRKAE 139 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~----l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~ 139 (447)
+..|+++||++|+...+.+++. .+.+..+|.+.+++ +++.+++.++|++++. |+. ..| .+.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~---------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~--~~g-~~~~ 67 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK---------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI--IVG-FDPE 67 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC---------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE--Eee-CCHH
Confidence 5679999999999998887651 27788899987654 5667999999999984 543 445 4778
Q ss_pred HHHHHH
Q 013240 140 LLVRYL 145 (447)
Q Consensus 140 ~i~~fi 145 (447)
.|.+|+
T Consensus 68 ~i~~~i 73 (74)
T TIGR02196 68 KLDQLL 73 (74)
T ss_pred HHHHHh
Confidence 888776
No 118
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.42 E-value=1.6e-06 Score=77.27 Aligned_cols=90 Identities=13% Similarity=0.208 Sum_probs=63.9
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCc-----------cchhhhhhCCCc-----------
Q 013240 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-----------KYSRLASKQEID----------- 116 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~-----------~~~~l~~~~~i~----------- 116 (447)
.+++++|.||++||+.|+...|.+.++.+.+.+.+ +.+..|+|+ +..+.++++++.
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g--~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g 115 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG--LEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNG 115 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc--eEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccC
Confidence 45899999999999999999999999999987643 888889883 123445555541
Q ss_pred -------------------------ccc---EEEEE-eCCeeEE-ecCCCCHHHHHHHHHHhcC
Q 013240 117 -------------------------AFP---TLKIF-MHGIPTE-YYGPRKAELLVRYLKKFVA 150 (447)
Q Consensus 117 -------------------------~~P---tl~~~-~~g~~~~-y~g~~~~~~i~~fi~~~~~ 150 (447)
++| +.+++ ++|+++. |.|..+.+.|.+.+.+++.
T Consensus 116 ~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~ 179 (199)
T PTZ00056 116 ENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG 179 (199)
T ss_pred CccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 111 23333 5677665 6677777777777776643
No 119
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.30 E-value=2.5e-06 Score=60.29 Aligned_cols=60 Identities=38% Similarity=0.741 Sum_probs=51.2
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhh---hCCCccccEEEEEeCC
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLAS---KQEIDAFPTLKIFMHG 127 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~---~~~i~~~Ptl~~~~~g 127 (447)
++.|++.||++|+...+.+.++ ... ...+.+..++++.....+. .+++.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALL---NKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-Hhh---CCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999988 222 2359999999998887765 8999999999999887
No 120
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=98.30 E-value=1.4e-05 Score=60.96 Aligned_cols=108 Identities=14% Similarity=0.253 Sum_probs=75.3
Q ss_pred CCccccChhhHHhhhc-C-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC---ceEEEEeccchHhH----HhhcCCC
Q 013240 253 PLSVPINQDTLNLLKD-D-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADF----ADTFEAN 323 (447)
Q Consensus 253 p~~~~l~~~~~~~~~~-~-~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~f~~vd~~~~~~~----~~~~~i~ 323 (447)
|.++.+++.+..++-. . ....+++|. ...+.+--++.++++++|+++.+ +.|+|||..++|-+ -+.|+|+
T Consensus 1 ptlrkl~~~~m~e~wedd~~g~~IvAFa-ee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~ID 79 (120)
T cd03074 1 PTLRKLKPENMFETWEDDLDGIHIVAFA-EEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGID 79 (120)
T ss_pred CchhhccHHHHHHhhhcccCCceEEEEe-ccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcc
Confidence 4456666655544322 2 233444444 45666667899999999999875 99999999988654 4678994
Q ss_pred CCCCCceEEEEeCC---ccceecCCCCCCCcccchhHHHHHHHHHh
Q 013240 324 KKSKLPKMVVWDGN---ENYLTVIGSESIDEEDQGSQISRFLEGYR 366 (447)
Q Consensus 324 ~~~~~P~vvi~~~~---~~y~~~~g~~~~~~~~~~~~i~~Fl~~~~ 366 (447)
-..|++.+++.. +.+..+++. ++..+.+.+..|+++++
T Consensus 80 --l~~PqIGVV~vtdadSvW~~m~~~---~d~~t~~~Le~WiedVL 120 (120)
T cd03074 80 --LFRPQIGVVNVTDADSVWMEMDDD---EDLPTAEELEDWIEDVL 120 (120)
T ss_pred --cCCCceeeEecccccceeEecccc---cccCcHHHHHHHHHhhC
Confidence 447999999985 355555432 23468899999999874
No 121
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.29 E-value=3.4e-06 Score=67.68 Aligned_cols=69 Identities=33% Similarity=0.627 Sum_probs=61.3
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCc-cchhhhhhCC--CccccEEEEEeCCeeEE
Q 013240 60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-KYSRLASKQE--IDAFPTLKIFMHGIPTE 131 (447)
Q Consensus 60 ~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~-~~~~l~~~~~--i~~~Ptl~~~~~g~~~~ 131 (447)
.+++++.||++||++|+.+.|.+.++++.+.. .+.+..+|.. ..+++...++ +..+|++.++.+|....
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 103 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG---DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVD 103 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC---CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhh
Confidence 67999999999999999999999999998765 4889999997 7899999999 99999999888876543
No 122
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.29 E-value=1.8e-05 Score=62.30 Aligned_cols=99 Identities=8% Similarity=0.236 Sum_probs=80.0
Q ss_pred cccChhhHHhhhcC-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC-CceEEEEeccchHhHHhhcCCCCCCCCceEEE
Q 013240 256 VPINQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANR-ELVFCYVGIKQFADFADTFEANKKSKLPKMVV 333 (447)
Q Consensus 256 ~~l~~~~~~~~~~~-~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~-~~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi 333 (447)
..+|.++|...... ++++++.|+. .....-..+...+.++++.+. ++.|+.+|+...+.+++.+++ ...|++++
T Consensus 2 ~~lt~~~f~~~i~~~~~~vvv~f~~-~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt~~~ 77 (103)
T PF00085_consen 2 IVLTDENFEKFINESDKPVVVYFYA-PWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGV---KSVPTIIF 77 (103)
T ss_dssp EEESTTTHHHHHTTTSSEEEEEEES-TTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTC---SSSSEEEE
T ss_pred EECCHHHHHHHHHccCCCEEEEEeC-CCCCccccccceecccccccccccccchhhhhccchhhhccCC---CCCCEEEE
Confidence 46788889886665 6777777765 466677888899999999999 599999999999999999999 78999999
Q ss_pred EeCCccceecCCCCCCCcccchhHHHHHHHH
Q 013240 334 WDGNENYLTVIGSESIDEEDQGSQISRFLEG 364 (447)
Q Consensus 334 ~~~~~~y~~~~g~~~~~~~~~~~~i~~Fl~~ 364 (447)
++.++....+. +..+.+.|.+||+.
T Consensus 78 ~~~g~~~~~~~------g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 78 FKNGKEVKRYN------GPRNAESLIEFIEK 102 (103)
T ss_dssp EETTEEEEEEE------SSSSHHHHHHHHHH
T ss_pred EECCcEEEEEE------CCCCHHHHHHHHHc
Confidence 99876444443 34567899999975
No 123
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.28 E-value=9.9e-06 Score=70.53 Aligned_cols=91 Identities=18% Similarity=0.246 Sum_probs=67.6
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc-----------------------------chhh
Q 013240 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-----------------------------YSRL 109 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~-----------------------------~~~l 109 (447)
++++++|.||++||+.|....|.+.++.+.+.+. ++.+..|+++. +..+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~--~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~ 101 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK--GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEV 101 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC--CeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHH
Confidence 5689999999999999999999999999988643 38888887753 1346
Q ss_pred hhhCCCccccEEEEEeC-CeeEEecC-----------CCCHHHHHHHHHHhcCCC
Q 013240 110 ASKQEIDAFPTLKIFMH-GIPTEYYG-----------PRKAELLVRYLKKFVAPD 152 (447)
Q Consensus 110 ~~~~~i~~~Ptl~~~~~-g~~~~y~g-----------~~~~~~i~~fi~~~~~~~ 152 (447)
++.|++...|+++++.+ |+. .|.| ..+.+++.+-|...+...
T Consensus 102 ~~~~~v~~~P~~~lid~~G~v-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 155 (171)
T cd02969 102 AKAYGAACTPDFFLFDPDGKL-VYRGRIDDSRPGNDPPVTGRDLRAALDALLAGK 155 (171)
T ss_pred HHHcCCCcCCcEEEECCCCeE-EEeecccCCcccccccccHHHHHHHHHHHHcCC
Confidence 77889999999999975 544 3432 234566666666655443
No 124
>PLN02412 probable glutathione peroxidase
Probab=98.27 E-value=8.8e-06 Score=70.47 Aligned_cols=90 Identities=10% Similarity=0.061 Sum_probs=64.8
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc-------c-hh----hhhhCCC-----------
Q 013240 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-------Y-SR----LASKQEI----------- 115 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~-------~-~~----l~~~~~i----------- 115 (447)
..++++|.||++||+.|+...|.+.++.+.+++.+ +.+..|+|+. . .+ +++++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g--~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~ 105 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG--FEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVN 105 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC--cEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeC
Confidence 35899999999999999999999999999998654 8888888742 1 11 1333332
Q ss_pred -----------------------ccccEEEEE-eCCeeEE-ecCCCCHHHHHHHHHHhcC
Q 013240 116 -----------------------DAFPTLKIF-MHGIPTE-YYGPRKAELLVRYLKKFVA 150 (447)
Q Consensus 116 -----------------------~~~Ptl~~~-~~g~~~~-y~g~~~~~~i~~fi~~~~~ 150 (447)
...|+.+++ ++|+.+. +.|..+.+.+...+..++.
T Consensus 106 g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 106 GKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 224565666 4466654 7888888888888777654
No 125
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.26 E-value=1.1e-05 Score=63.44 Aligned_cols=99 Identities=10% Similarity=0.117 Sum_probs=75.8
Q ss_pred CCccccChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHhHHhhcCCCCCCCCceE
Q 013240 253 PLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM 331 (447)
Q Consensus 253 p~~~~l~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~~i~~~~~~P~v 331 (447)
|.+..++..+|+.....++++++.|+. .....-..+...+.++|+++++ +.|+.+|+++.+.+++.+++ ..+|++
T Consensus 1 ~~~~~l~~~~f~~~v~~~~~~~v~f~a-~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~ 76 (101)
T cd03003 1 PEIVTLDRGDFDAAVNSGEIWFVNFYS-PRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGV---NSYPSL 76 (101)
T ss_pred CCeEEcCHhhHHHHhcCCCeEEEEEEC-CCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCC---CccCEE
Confidence 346678899998877666777777775 4556667888899999999887 89999999999999999999 789999
Q ss_pred EEEeCCccceecCCCCCCCcccchhHHHHH
Q 013240 332 VVWDGNENYLTVIGSESIDEEDQGSQISRF 361 (447)
Q Consensus 332 vi~~~~~~y~~~~g~~~~~~~~~~~~i~~F 361 (447)
+++..+.....+. +..+.+.|.+|
T Consensus 77 ~~~~~g~~~~~~~------G~~~~~~l~~f 100 (101)
T cd03003 77 YVFPSGMNPEKYY------GDRSKESLVKF 100 (101)
T ss_pred EEEcCCCCcccCC------CCCCHHHHHhh
Confidence 9997554333333 34456677766
No 126
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=98.25 E-value=4.2e-06 Score=66.06 Aligned_cols=94 Identities=20% Similarity=0.306 Sum_probs=73.6
Q ss_pred CceecCChhHHHHHHH-hcCCcccEEEeecCCh-----hHHHHHHHHhhhhhHhHHhhccchhhhhhcCCCCCCeEEEEc
Q 013240 152 DVSILNSDAEVSDFVE-NAGTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQ 225 (447)
Q Consensus 152 ~v~~i~s~~~~~~~l~-~~~~~~~~vi~f~~~~-----~~~~~~a~~~~~~~~f~~~~~~~~~~~~~~~i~~~P~l~~~~ 225 (447)
+++.|++.++++.|+. .++ +.+|||+.+. ..|..+|..+++.+.|+.. .+.++...+++. .|++++++
T Consensus 1 ~v~~i~~~~~~e~~~~~~~~---~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~--~~~~~~~~~~~~-~~~i~l~~ 74 (102)
T cd03066 1 PVEIINSERELQAFENIEDD---IKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFAT--FDSKVAKKLGLK-MNEVDFYE 74 (102)
T ss_pred CceEcCCHHHHHHHhcccCC---eEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEE--CcHHHHHHcCCC-CCcEEEeC
Confidence 3577888889999997 655 4888887542 3788999999988877665 466777888876 58999998
Q ss_pred CCCCCcccc-cCCCChHHHHHHHHhhC
Q 013240 226 PSYNEHNIF-YGPFDEEFLEEFIKQNF 251 (447)
Q Consensus 226 ~~~~~~~~~-~g~~~~~~i~~fI~~~~ 251 (447)
+..+....| .|.++.+.|.+||..+.
T Consensus 75 ~~~e~~~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 75 PFMEEPVTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred CCCCCCcccCCCCCCHHHHHHHHHHhc
Confidence 755666778 77889999999998764
No 127
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.24 E-value=1.2e-05 Score=68.03 Aligned_cols=77 Identities=23% Similarity=0.416 Sum_probs=59.2
Q ss_pred cCCeEEEEEECC-CChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccc---------------------hhhhhhCCCc
Q 013240 59 SFDYILVDFYAP-WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY---------------------SRLASKQEID 116 (447)
Q Consensus 59 ~~~~~lV~f~~~-~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~---------------------~~l~~~~~i~ 116 (447)
+.++++|.||+. ||++|+...|.+.++++.++..+ +.+..|+.+.+ ..+.+.+++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~--v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 104 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG--VDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVT 104 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--CEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc--eEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCc
Confidence 568999999999 99999999999999988876543 66666665433 4678889988
Q ss_pred ---------cccEEEEEeC-CeeEE-ecCCCC
Q 013240 117 ---------AFPTLKIFMH-GIPTE-YYGPRK 137 (447)
Q Consensus 117 ---------~~Ptl~~~~~-g~~~~-y~g~~~ 137 (447)
++|+++++.. |+... +.|...
T Consensus 105 ~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 105 IMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp EECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred cccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 9999988865 66554 455443
No 128
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.23 E-value=4.1e-06 Score=65.44 Aligned_cols=91 Identities=25% Similarity=0.360 Sum_probs=71.5
Q ss_pred eecCChhHHHHHHHhcCCcccEEEeecCCh-----hHHHHHHHHhhhhhHhHHhhccchhhhhhcCCCCCCeEEEEcCCC
Q 013240 154 SILNSDAEVSDFVENAGTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSY 228 (447)
Q Consensus 154 ~~i~s~~~~~~~l~~~~~~~~~vi~f~~~~-----~~~~~~a~~~~~~~~f~~~~~~~~~~~~~~~i~~~P~l~~~~~~~ 228 (447)
.++++.++++.++...+ +++|||+.+. ..|..+|..+++...|+.+ .+.++.+++++.. |++++|++..
T Consensus 2 ~~i~s~~~l~~~~~~~~---~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~--~~~~~~~~~~~~~-~~i~l~~~~~ 75 (97)
T cd02981 2 KELTSKEELEKFLDKDD---VVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHT--SDKEVAKKLKVKP-GSVVLFKPFE 75 (97)
T ss_pred eecCCHHHHHHHhccCC---eEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEE--ChHHHHHHcCCCC-CceEEeCCcc
Confidence 56778888888876654 5888888552 3788899999887666655 3567777788764 8999999877
Q ss_pred CCcccccCCCChHHHHHHHHhh
Q 013240 229 NEHNIFYGPFDEEFLEEFIKQN 250 (447)
Q Consensus 229 ~~~~~~~g~~~~~~i~~fI~~~ 250 (447)
+....|.|+++.+.|.+||..+
T Consensus 76 ~~~~~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 76 EEPVEYDGEFTEESLVEFIKDN 97 (97)
T ss_pred cCCccCCCCCCHHHHHHHHHhC
Confidence 7778899999999999999864
No 129
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.23 E-value=1.6e-05 Score=62.84 Aligned_cols=100 Identities=17% Similarity=0.289 Sum_probs=75.3
Q ss_pred CCccccChhhHHhhh-cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHhHHhhcCCCCCCCCce
Q 013240 253 PLSVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPK 330 (447)
Q Consensus 253 p~~~~l~~~~~~~~~-~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~~i~~~~~~P~ 330 (447)
|.+.+++..+|+... ..+.++++.|+. .....-+.+...+.+++.++.+ +.|+.+|++.++++++.+++ ..+|+
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~~v~v~f~a-~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i---~~~Pt 76 (104)
T cd03004 1 PSVITLTPEDFPELVLNRKEPWLVDFYA-PWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANI---RAYPT 76 (104)
T ss_pred CcceEcCHHHHHHHHhcCCCeEEEEEEC-CCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCC---CcccE
Confidence 456678888998754 445567776665 4556667788899999999876 99999999999999999999 78999
Q ss_pred EEEEeCC-ccceecCCCCCCCcccc-hhHHHHHH
Q 013240 331 MVVWDGN-ENYLTVIGSESIDEEDQ-GSQISRFL 362 (447)
Q Consensus 331 vvi~~~~-~~y~~~~g~~~~~~~~~-~~~i~~Fl 362 (447)
+++++.+ +....+.| ..+ .++|.+|+
T Consensus 77 ~~~~~~g~~~~~~~~G------~~~~~~~l~~~i 104 (104)
T cd03004 77 IRLYPGNASKYHSYNG------WHRDADSILEFI 104 (104)
T ss_pred EEEEcCCCCCceEccC------CCCCHHHHHhhC
Confidence 9999886 44444443 223 56777774
No 130
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.22 E-value=1.2e-05 Score=74.27 Aligned_cols=85 Identities=24% Similarity=0.367 Sum_probs=66.5
Q ss_pred CCCeEEeCh-hhHHHhHcc---CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCcc
Q 013240 42 DGKVIELDE-SNFDSAISS---FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA 117 (447)
Q Consensus 42 ~~~v~~l~~-~~f~~~~~~---~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~ 117 (447)
-+.|..|+. +.|-+++.+ ...++|.||.+.++.|..+...+..+|..+.. +.|.+|..+..+ ++.+|.+..
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~~-~~~~f~~~~ 198 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKCP-ASENFPDKN 198 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGCC-TTTTS-TTC
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhccC-cccCCcccC
Confidence 478999964 788888843 34789999999999999999999999998754 999999987766 788999999
Q ss_pred ccEEEEEeCCeeEE
Q 013240 118 FPTLKIFMHGIPTE 131 (447)
Q Consensus 118 ~Ptl~~~~~g~~~~ 131 (447)
.|+|++|++|..+.
T Consensus 199 LPtllvYk~G~l~~ 212 (265)
T PF02114_consen 199 LPTLLVYKNGDLIG 212 (265)
T ss_dssp -SEEEEEETTEEEE
T ss_pred CCEEEEEECCEEEE
Confidence 99999999997664
No 131
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.20 E-value=1.3e-05 Score=65.48 Aligned_cols=72 Identities=19% Similarity=0.378 Sum_probs=58.8
Q ss_pred cCCeEEEEEECC-CChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc---------------------chhhhhhCCCc
Q 013240 59 SFDYILVDFYAP-WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---------------------YSRLASKQEID 116 (447)
Q Consensus 59 ~~~~~lV~f~~~-~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~---------------------~~~l~~~~~i~ 116 (447)
.+++++|.||+. ||++|....+.+.++.+.++..+ +.+..|+.+. +.++++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~--~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 101 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKG--VQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIE 101 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccce--EEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCc
Confidence 459999999999 99999999999999999988543 7888887643 34678888888
Q ss_pred ------cccEEEEEeCCeeEEe
Q 013240 117 ------AFPTLKIFMHGIPTEY 132 (447)
Q Consensus 117 ------~~Ptl~~~~~g~~~~y 132 (447)
.+|+.+++..+..+.|
T Consensus 102 ~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 102 DEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp ETTTSEESEEEEEEETTSBEEE
T ss_pred cccCCceEeEEEEECCCCEEEe
Confidence 8999999987655544
No 132
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.19 E-value=5.2e-06 Score=68.96 Aligned_cols=75 Identities=25% Similarity=0.455 Sum_probs=61.2
Q ss_pred HhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccc-------------------------hhh
Q 013240 55 SAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-------------------------SRL 109 (447)
Q Consensus 55 ~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~-------------------------~~l 109 (447)
..+. ++.+.++|-|.||++|+.|.|.++++.+.++..+.++-+.-|+-|.+ .++
T Consensus 29 ~~l~-gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l 107 (157)
T KOG2501|consen 29 EALQ-GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKL 107 (157)
T ss_pred HhhC-CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHH
Confidence 3444 49999999999999999999999999999988766677777776543 468
Q ss_pred hhhCCCccccEEEEEeC-CeeE
Q 013240 110 ASKQEIDAFPTLKIFMH-GIPT 130 (447)
Q Consensus 110 ~~~~~i~~~Ptl~~~~~-g~~~ 130 (447)
+++|+|.+.|++++..+ |..+
T Consensus 108 ~~ky~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 108 SEKYEVKGIPALVILKPDGTVV 129 (157)
T ss_pred HHhcccCcCceeEEecCCCCEe
Confidence 89999999999998865 6444
No 133
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=98.18 E-value=5.7e-06 Score=65.51 Aligned_cols=91 Identities=23% Similarity=0.352 Sum_probs=70.9
Q ss_pred ceecCChhHHHHHHHhcCCcccEEEeecCCh-----hHHHHHHHHhhhhhHhHHhhccchhhhhhcCCCCCCeEEEEcC-
Q 013240 153 VSILNSDAEVSDFVENAGTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQP- 226 (447)
Q Consensus 153 v~~i~s~~~~~~~l~~~~~~~~~vi~f~~~~-----~~~~~~a~~~~~~~~f~~~~~~~~~~~~~~~i~~~P~l~~~~~- 226 (447)
++++.+.+++++|+...+ +.+|||+.+. ..|..+|..+++.+.|+.. .+.++..++++ .|++++|+|
T Consensus 2 ~~~i~s~~~l~~f~~~~~---~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~--~~~~~~~~~~~--~~~ivl~~p~ 74 (104)
T cd03069 2 SVELRTEAEFEKFLSDDD---ASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHT--SDKQLLEKYGY--GEGVVLFRPP 74 (104)
T ss_pred ccccCCHHHHHHHhccCC---cEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEE--ChHHHHHhcCC--CCceEEEech
Confidence 567888889999997654 5888887552 3788899999988877655 46678888888 488999965
Q ss_pred -----CCCCcccccCCCChHHHHHHHHhh
Q 013240 227 -----SYNEHNIFYGPFDEEFLEEFIKQN 250 (447)
Q Consensus 227 -----~~~~~~~~~g~~~~~~i~~fI~~~ 250 (447)
.++....|.|+++.+.|.+||..+
T Consensus 75 ~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 75 RLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 234556699999999999999876
No 134
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.16 E-value=8.2e-06 Score=60.57 Aligned_cols=57 Identities=25% Similarity=0.434 Sum_probs=43.3
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhh-----CCCccccEEEEEeCCeeE
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASK-----QEIDAFPTLKIFMHGIPT 130 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~-----~~i~~~Ptl~~~~~g~~~ 130 (447)
++.|+++||++|+++.+.+.+.. +.+-.+|.++++..... +++.++|++ ++.+|...
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~---------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l 63 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG---------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFL 63 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC---------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEe
Confidence 57899999999999999876542 44567888877766555 489999997 46777543
No 135
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.16 E-value=1.7e-05 Score=58.77 Aligned_cols=73 Identities=27% Similarity=0.485 Sum_probs=54.9
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCCeeEEecC-CCCHHHHHH
Q 013240 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYG-PRKAELLVR 143 (447)
Q Consensus 65 V~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g-~~~~~~i~~ 143 (447)
|.+++++|++|..+...+.+++..+ + +.+-.++..+.+++ .+|||.++|++++ +|+ +.|.| .-+.+.|.+
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~-~----i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~-~~~~G~~p~~~el~~ 73 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEEL-G----IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK-VVFVGRVPSKEELKE 73 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHT-T----EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE-EEEESS--HHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhc-C----CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE-EEEEecCCCHHHHHH
Confidence 4457899999999999999998765 2 66677777666666 9999999999954 665 45778 677788888
Q ss_pred HHH
Q 013240 144 YLK 146 (447)
Q Consensus 144 fi~ 146 (447)
|++
T Consensus 74 ~l~ 76 (76)
T PF13192_consen 74 LLE 76 (76)
T ss_dssp HHH
T ss_pred HhC
Confidence 774
No 136
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.15 E-value=2.1e-05 Score=67.10 Aligned_cols=88 Identities=14% Similarity=0.092 Sum_probs=62.0
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCc--------c---chhhhhh-CCCc----------
Q 013240 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD--------K---YSRLASK-QEID---------- 116 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~--------~---~~~l~~~-~~i~---------- 116 (447)
+.++++|.||++||+.|+...|.+.++.+++... .+.+..|+|. . -.+.+++ +++.
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~--~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~ 98 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPS--HFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKIL 98 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC--CeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecC
Confidence 3578999999999999999999999999998754 3888889872 1 1233432 3221
Q ss_pred ----------------cccE----EEEE-eCCeeEE-ecCCCCHHHHHHHHHHh
Q 013240 117 ----------------AFPT----LKIF-MHGIPTE-YYGPRKAELLVRYLKKF 148 (447)
Q Consensus 117 ----------------~~Pt----l~~~-~~g~~~~-y~g~~~~~~i~~fi~~~ 148 (447)
+.|+ .+++ ++|+... |.|..+.+.|.+.++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 99 GSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 2563 3333 5577665 78888888887777654
No 137
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.14 E-value=1.5e-05 Score=71.61 Aligned_cols=81 Identities=21% Similarity=0.199 Sum_probs=66.4
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCc-----------cchhhhhhCCCccccEEEEEeCC
Q 013240 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-----------KYSRLASKQEIDAFPTLKIFMHG 127 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~-----------~~~~l~~~~~i~~~Ptl~~~~~g 127 (447)
.++..|+.||.+.|++|+.+.|.+..+++.+ + +.+..|+.| .++.+++++||..+|+++++..+
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g----~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~ 193 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY-G----FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPN 193 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-C----CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECC
Confidence 4579999999999999999999999999876 3 555666665 45889999999999999999875
Q ss_pred e--eEE-ecCCCCHHHHHHH
Q 013240 128 I--PTE-YYGPRKAELLVRY 144 (447)
Q Consensus 128 ~--~~~-y~g~~~~~~i~~f 144 (447)
. ... -.|..+.++|.+-
T Consensus 194 ~~~~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 194 TKKWYPVSQGFMSLDELEDR 213 (215)
T ss_pred CCeEEEEeeecCCHHHHHHh
Confidence 4 333 5788888888764
No 138
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.09 E-value=1.3e-05 Score=68.25 Aligned_cols=42 Identities=14% Similarity=0.110 Sum_probs=36.6
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCc
Q 013240 60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104 (447)
Q Consensus 60 ~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~ 104 (447)
.++++|.||++||+ |....|.+.++.+.+++. .+.+..|+++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~--~~~vv~v~~~ 63 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR--GLVVLGFPCN 63 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC--CEEEEEeccC
Confidence 58999999999999 999999999999988654 3888888764
No 139
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.08 E-value=7.8e-05 Score=67.90 Aligned_cols=187 Identities=20% Similarity=0.308 Sum_probs=115.8
Q ss_pred HHHHHHHhcCCcccEEEeecCCh--------hHHHHHHHHhhhhh------HhHHhhccchhhhhhcCCCCCCeEEEEcC
Q 013240 161 EVSDFVENAGTFFPLFIGFGLDE--------SVMSNLALKYKKKA------WFAVAKDFSEDTMVLYDFDKVPALVALQP 226 (447)
Q Consensus 161 ~~~~~l~~~~~~~~~vi~f~~~~--------~~~~~~a~~~~~~~------~f~~~~~~~~~~~~~~~i~~~P~l~~~~~ 226 (447)
+++..+..++ .+|+.|+.+. +.|.+.|..++... |-.+..+...+++.+|.|+++|++.+|+.
T Consensus 5 N~~~il~s~e---lvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrn 81 (375)
T KOG0912|consen 5 NIDSILDSNE---LVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRN 81 (375)
T ss_pred cHHHhhccce---EEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeec
Confidence 4666666644 5888887653 36777787777522 22223445678999999999999999998
Q ss_pred CCCCcccccCCCChHHHHHHHHhhCCCCccccC-hhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ce
Q 013240 227 SYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPIN-QDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LV 304 (447)
Q Consensus 227 ~~~~~~~~~g~~~~~~i~~fI~~~~~p~~~~l~-~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~ 304 (447)
+.-....|.|....+.|.+||++..--.+.++. .+.+..+....+..++..+.+.+..++ +.++++|.-.++ ..
T Consensus 82 G~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey----~~~~kva~~lr~dc~ 157 (375)
T KOG0912|consen 82 GEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEY----DNLRKVASLLRDDCV 157 (375)
T ss_pred cchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchH----HHHHHHHHHHhhccE
Confidence 766677899999999999999988555555543 345555555345566667765555544 346667776654 44
Q ss_pred EEEEeccchHhHHhhcCCCCCCCCceEEEEeCCccce--ecCCCCCCCcccchhHHHHHHHHHhc
Q 013240 305 FCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYL--TVIGSESIDEEDQGSQISRFLEGYRE 367 (447)
Q Consensus 305 f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~~~~y~--~~~g~~~~~~~~~~~~i~~Fl~~~~~ 367 (447)
| +|... +.++-+...+.+ +.+++++..-. .+.|. .-+.+.+.+|+++=--
T Consensus 158 f-~V~~g------D~~~~~~~~~~~-~~~f~pd~~~~~~~f~G~-----~~nf~el~~Wi~dKcv 209 (375)
T KOG0912|consen 158 F-LVGFG------DLLKPHEPPGKN-ILVFDPDHSEPNHEFLGS-----MTNFDELKQWIQDKCV 209 (375)
T ss_pred E-Eeecc------ccccCCCCCCCc-eEEeCCCcCCcCcccccc-----cccHHHHHHHHHhcch
Confidence 4 22211 111111122233 56777753221 34432 3357789999876433
No 140
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.03 E-value=4.1e-05 Score=59.70 Aligned_cols=87 Identities=18% Similarity=0.255 Sum_probs=70.7
Q ss_pred hhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCC--e
Q 013240 51 SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG--I 128 (447)
Q Consensus 51 ~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g--~ 128 (447)
+.++.++...++++|-|+..+|+ .....|.++|+.++.. +.|+.+. ++++++++++.. |++.+|++. .
T Consensus 8 ~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~---~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~~~ 77 (97)
T cd02981 8 EELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDD---YGFGHTS---DKEVAKKLKVKP-GSVVLFKPFEEE 77 (97)
T ss_pred HHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccC---CeEEEEC---hHHHHHHcCCCC-CceEEeCCcccC
Confidence 44666788889999999999887 5678899999888653 8888777 567888887764 999999874 4
Q ss_pred eEEecCCCCHHHHHHHHHH
Q 013240 129 PTEYYGPRKAELLVRYLKK 147 (447)
Q Consensus 129 ~~~y~g~~~~~~i~~fi~~ 147 (447)
+..|.|..+.++|.+|+..
T Consensus 78 ~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 78 PVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred CccCCCCCCHHHHHHHHHh
Confidence 5669999999999999864
No 141
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.01 E-value=8e-05 Score=58.63 Aligned_cols=98 Identities=11% Similarity=0.096 Sum_probs=72.1
Q ss_pred ccccChhhHHhhhcCCC-cEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHhHHhhcCCCCCCCCceEE
Q 013240 255 SVPINQDTLNLLKDDKR-KIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 332 (447)
Q Consensus 255 ~~~l~~~~~~~~~~~~~-~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~~i~~~~~~P~vv 332 (447)
+.+++..++......+. ++++.|+. .....-..+...+.++++++++ +.|+.+|++..+++++.+++ ...|+++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a-~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i---~~~P~~~ 77 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYA-PWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGV---RGFPTIK 77 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEEC-CCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCC---CccCEEE
Confidence 34677888877654444 46666654 4566667778889999988775 99999999999999999999 7799999
Q ss_pred EEeCC-ccceecCCCCCCCcccchhHHHHHH
Q 013240 333 VWDGN-ENYLTVIGSESIDEEDQGSQISRFL 362 (447)
Q Consensus 333 i~~~~-~~y~~~~g~~~~~~~~~~~~i~~Fl 362 (447)
+++.+ .....+. +..+.+.|.+|+
T Consensus 78 ~~~~~~~~~~~~~------g~~~~~~l~~~~ 102 (103)
T cd03001 78 VFGAGKNSPQDYQ------GGRTAKAIVSAA 102 (103)
T ss_pred EECCCCcceeecC------CCCCHHHHHHHh
Confidence 99876 3333343 345567888876
No 142
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.00 E-value=6.9e-05 Score=59.92 Aligned_cols=104 Identities=15% Similarity=0.074 Sum_probs=83.2
Q ss_pred eEEeChhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCcc--ccEEE
Q 013240 45 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA--FPTLK 122 (447)
Q Consensus 45 v~~l~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~--~Ptl~ 122 (447)
|.++|.+|+..+.....+..+.|+++ ..-..+.+.+.++|+.|....+++.|+.+|.+......+.+|++. .|.+.
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~ 78 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIA 78 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEE
Confidence 45688899999998888877777733 244788999999999944444569999999999888999999997 89999
Q ss_pred EEeCCe--eEE-ecCCCCHHHHHHHHHHhcC
Q 013240 123 IFMHGI--PTE-YYGPRKAELLVRYLKKFVA 150 (447)
Q Consensus 123 ~~~~g~--~~~-y~g~~~~~~i~~fi~~~~~ 150 (447)
+..... ... +.+..++++|.+|+.++..
T Consensus 79 i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 79 IDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 987643 233 4588999999999998764
No 143
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.94 E-value=7.8e-05 Score=59.44 Aligned_cols=98 Identities=15% Similarity=0.227 Sum_probs=70.7
Q ss_pred ccccChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC----C---CceEEEEeccchHhHHhhcCCCCCCC
Q 013240 255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASAN----R---ELVFCYVGIKQFADFADTFEANKKSK 327 (447)
Q Consensus 255 ~~~l~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~----~---~~~f~~vd~~~~~~~~~~~~i~~~~~ 327 (447)
+.+++.++|+.....++++++.|+. .....-..+...+.++|+.+ + .+.|+.+|+...+++++.+|+ ..
T Consensus 3 v~~l~~~~f~~~i~~~~~vlv~F~a-~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v---~~ 78 (108)
T cd02996 3 IVSLTSGNIDDILQSAELVLVNFYA-DWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRI---NK 78 (108)
T ss_pred eEEcCHhhHHHHHhcCCEEEEEEEC-CCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCC---Cc
Confidence 5678899999887777777777764 34555566677777777653 2 288999999999999999999 78
Q ss_pred CceEEEEeCCc-cceecCCCCCCCcccchhHHHHHH
Q 013240 328 LPKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFL 362 (447)
Q Consensus 328 ~P~vvi~~~~~-~y~~~~g~~~~~~~~~~~~i~~Fl 362 (447)
+|++.++..++ ....+.| ..+.+.|.+||
T Consensus 79 ~Ptl~~~~~g~~~~~~~~g------~~~~~~l~~fi 108 (108)
T cd02996 79 YPTLKLFRNGMMMKREYRG------QRSVEALAEFV 108 (108)
T ss_pred CCEEEEEeCCcCcceecCC------CCCHHHHHhhC
Confidence 99999997654 2233333 33456777774
No 144
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.89 E-value=4.9e-05 Score=64.74 Aligned_cols=89 Identities=27% Similarity=0.449 Sum_probs=78.4
Q ss_pred CCCeEEeC-hhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccE
Q 013240 42 DGKVIELD-ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPT 120 (447)
Q Consensus 42 ~~~v~~l~-~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Pt 120 (447)
-+....+. +.+|-+.+....-+++.||.|.-..|+-+-..++.+|...-+ ..|.+||+++.|-||.+++|+-.|+
T Consensus 65 hG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvnae~~PFlv~kL~IkVLP~ 140 (211)
T KOG1672|consen 65 HGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNAEKAPFLVTKLNIKVLPT 140 (211)
T ss_pred CceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEecccCceeeeeeeeeEeee
Confidence 35677774 788888888889999999999999999999999999986433 8899999999999999999999999
Q ss_pred EEEEeCCeeEEe-cC
Q 013240 121 LKIFMHGIPTEY-YG 134 (447)
Q Consensus 121 l~~~~~g~~~~y-~g 134 (447)
+.+|.+|...+| .|
T Consensus 141 v~l~k~g~~~D~iVG 155 (211)
T KOG1672|consen 141 VALFKNGKTVDYVVG 155 (211)
T ss_pred EEEEEcCEEEEEEee
Confidence 999999988874 44
No 145
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.89 E-value=0.00015 Score=56.88 Aligned_cols=98 Identities=11% Similarity=0.169 Sum_probs=72.9
Q ss_pred cChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC---ceEEEEeccchHhHHhhcCCCCCCCCceEEEE
Q 013240 258 INQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFADTFEANKKSKLPKMVVW 334 (447)
Q Consensus 258 l~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~ 334 (447)
|+..++......+.+.++.|+. .....-+.+...+..++..+.+ +.|+.+|+...+.+++.+++ ...|+++++
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~-~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i---~~~P~~~~~ 76 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYA-PWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGV---SGFPTIKFF 76 (102)
T ss_pred CchhhHHHHhccCCcEEEEEEC-CCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCC---CcCCEEEEe
Confidence 4567777766666677777765 3555556666778888887764 99999999999999999999 789999999
Q ss_pred eCCccceecCCCCCCCcccchhHHHHHHHHH
Q 013240 335 DGNENYLTVIGSESIDEEDQGSQISRFLEGY 365 (447)
Q Consensus 335 ~~~~~y~~~~g~~~~~~~~~~~~i~~Fl~~~ 365 (447)
+.++....+. +..+.+.+..|+++.
T Consensus 77 ~~~~~~~~~~------g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 77 PKGKKPVDYE------GGRDLEAIVEFVNEK 101 (102)
T ss_pred cCCCcceeec------CCCCHHHHHHHHHhc
Confidence 9876433343 345567899998763
No 146
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.87 E-value=0.00015 Score=57.72 Aligned_cols=103 Identities=10% Similarity=0.135 Sum_probs=72.8
Q ss_pred ccccChhhHHhhh-cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccc--hHhHHhhcCCCCCCCCce
Q 013240 255 SVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ--FADFADTFEANKKSKLPK 330 (447)
Q Consensus 255 ~~~l~~~~~~~~~-~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~--~~~~~~~~~i~~~~~~P~ 330 (447)
+.+++..+++... ..++++++.|+. .....-+.+...+.++|+.+.+ +.|+.+|++. .+++++.+++ ...|+
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a-~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i---~~~Pt 77 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYA-PWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGV---QGFPT 77 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEEC-CCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCC---CcCCE
Confidence 4577888888754 445567776665 4556666777888899988876 8899999987 7889999999 78999
Q ss_pred EEEEeCCccceecCCCCCCCcccchhHHHHHH
Q 013240 331 MVVWDGNENYLTVIGSESIDEEDQGSQISRFL 362 (447)
Q Consensus 331 vvi~~~~~~y~~~~g~~~~~~~~~~~~i~~Fl 362 (447)
+++++.++..... ......+..+.+++.+|+
T Consensus 78 ~~~~~~~~~~~~~-~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 78 LKVFRPPKKASKH-AVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EEEEeCCCccccc-ccccccCccCHHHHHHHh
Confidence 9999987511000 001123455677888887
No 147
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.86 E-value=0.0003 Score=62.08 Aligned_cols=85 Identities=21% Similarity=0.195 Sum_probs=61.1
Q ss_pred CCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc-------------------------chhhhhhC
Q 013240 60 FDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-------------------------YSRLASKQ 113 (447)
Q Consensus 60 ~~~~lV~f~-~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~-------------------------~~~l~~~~ 113 (447)
.++++|.|| +.||+.|....|.+.++.+.+.+.+ +.+..|+++. ...+++.|
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g--v~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~ 108 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG--VEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNF 108 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHh
Confidence 578999999 9999999999999999999887544 4455555432 34677888
Q ss_pred CCc------cccEEEEEe-CCeeEE-ec--C--CCCHHHHHHHHH
Q 013240 114 EID------AFPTLKIFM-HGIPTE-YY--G--PRKAELLVRYLK 146 (447)
Q Consensus 114 ~i~------~~Ptl~~~~-~g~~~~-y~--g--~~~~~~i~~fi~ 146 (447)
|+. ..|+.+++. +|+... +. . .+..++|.+.++
T Consensus 109 gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 109 GVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred CCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 886 458888885 576543 21 1 357777776664
No 148
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.86 E-value=0.00011 Score=67.27 Aligned_cols=86 Identities=21% Similarity=0.226 Sum_probs=67.9
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccc-----------hhhhhhCCCccccEEEEEeCC
Q 013240 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-----------SRLASKQEIDAFPTLKIFMHG 127 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~-----------~~l~~~~~i~~~Ptl~~~~~g 127 (447)
.++..|+.||...|++|+.+.|.+..+++.+ + +.+..|+.|.. ..+++++||..+|++++....
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~y-g----i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~ 223 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEY-G----ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPK 223 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHh-C----CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECC
Confidence 3469999999999999999999999999875 3 56666666544 558999999999999999875
Q ss_pred e--eEE-ecCCCCHHHHHHHHHHhc
Q 013240 128 I--PTE-YYGPRKAELLVRYLKKFV 149 (447)
Q Consensus 128 ~--~~~-y~g~~~~~~i~~fi~~~~ 149 (447)
. ... =.|..+.++|.+-+...+
T Consensus 224 t~~~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 224 SQKMSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred CCcEEEEeeccCCHHHHHHHHHHHH
Confidence 3 222 478999998877665543
No 149
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.85 E-value=0.00013 Score=57.77 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=72.4
Q ss_pred CccccChhhHHhhhcCCCcEEEEEEeCC-ChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHhHHhhcCCCCCCCCceE
Q 013240 254 LSVPINQDTLNLLKDDKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM 331 (447)
Q Consensus 254 ~~~~l~~~~~~~~~~~~~~~vl~~~~~~-~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~~i~~~~~~P~v 331 (447)
.+++++..+|++....+.++++.|..+. .......+...|.++|+++.+ +.|+.+|.++.++.+..|++ ...|++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V---~sIPTl 87 (111)
T cd02965 11 GWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGV---LRTPAL 87 (111)
T ss_pred CCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCC---CcCCEE
Confidence 4567888899988888889998887542 356667788899999999988 88999999999999999999 789999
Q ss_pred EEEeCCccceecCC
Q 013240 332 VVWDGNENYLTVIG 345 (447)
Q Consensus 332 vi~~~~~~y~~~~g 345 (447)
+++..++......|
T Consensus 88 i~fkdGk~v~~~~G 101 (111)
T cd02965 88 LFFRDGRYVGVLAG 101 (111)
T ss_pred EEEECCEEEEEEeC
Confidence 99987654434433
No 150
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.84 E-value=0.00048 Score=71.58 Aligned_cols=177 Identities=16% Similarity=0.156 Sum_probs=114.0
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEe-CCe--eEEecCC
Q 013240 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFM-HGI--PTEYYGP 135 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~-~g~--~~~y~g~ 135 (447)
.++..|+.|+.+.|..|..+...++++++ ..++|.+-..|...+.+++++|++...|++.++. +|. .+.|.|-
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~~----~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~ 440 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFAS----LSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGV 440 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHHh----cCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEec
Confidence 33557889999999999888888877774 2456989889999999999999999999999995 553 3789987
Q ss_pred CCHHHHHHHHHHhcCC--CceecCChhHHHHHHHhcCC--cccEEEe-ecCChh----HHHHHHHHhhhhhHhHHh-hcc
Q 013240 136 RKAELLVRYLKKFVAP--DVSILNSDAEVSDFVENAGT--FFPLFIG-FGLDES----VMSNLALKYKKKAWFAVA-KDF 205 (447)
Q Consensus 136 ~~~~~i~~fi~~~~~~--~v~~i~s~~~~~~~l~~~~~--~~~~vi~-f~~~~~----~~~~~a~~~~~~~~f~~~-~~~ 205 (447)
-.-.++..|+.-.+.- .-..+ ++ +..+.+..-+. ..-+|++ -+..++ ....+|....+ ...... -..
T Consensus 441 P~G~Ef~s~i~~i~~~~~~~~~l-~~-~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~-i~~~~i~~~~ 517 (555)
T TIGR03143 441 PSGHELNSFILALYNAAGPGQPL-GE-ELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPN-VEAEMIDVSH 517 (555)
T ss_pred CccHhHHHHHHHHHHhcCCCCCC-CH-HHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCC-ceEEEEECcc
Confidence 7777777777655432 22333 33 34455543221 1112222 123333 23333333221 111111 122
Q ss_pred chhhhhhcCCCCCCeEEEEcCCCCCcccccCCCChHHHHHHH
Q 013240 206 SEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFI 247 (447)
Q Consensus 206 ~~~~~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~fI 247 (447)
-++++.+|++...|++++ +....+.|..+.+.|.+|+
T Consensus 518 ~~~~~~~~~v~~vP~~~i-----~~~~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 518 FPDLKDEYGIMSVPAIVV-----DDQQVYFGKKTIEEMLELI 554 (555)
T ss_pred cHHHHHhCCceecCEEEE-----CCEEEEeeCCCHHHHHHhh
Confidence 367888999999999888 4455677888888888876
No 151
>PRK10996 thioredoxin 2; Provisional
Probab=97.84 E-value=0.00031 Score=58.73 Aligned_cols=99 Identities=12% Similarity=0.213 Sum_probs=75.2
Q ss_pred ccChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHhHHhhcCCCCCCCCceEEEEe
Q 013240 257 PINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWD 335 (447)
Q Consensus 257 ~l~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~ 335 (447)
.++..+++.+...++++++.|+.+ ....-..+...|.++++++.+ +.|+.+|.+..+++++.+++ .+.|++++++
T Consensus 39 ~~~~~~~~~~i~~~k~vvv~F~a~-wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V---~~~Ptlii~~ 114 (139)
T PRK10996 39 NATGETLDKLLQDDLPVVIDFWAP-WCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRI---RSIPTIMIFK 114 (139)
T ss_pred EcCHHHHHHHHhCCCeEEEEEECC-CCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCC---CccCEEEEEE
Confidence 466777777766667777777653 455556677788899888775 99999999999999999999 7899999998
Q ss_pred CCccceecCCCCCCCcccchhHHHHHHHHH
Q 013240 336 GNENYLTVIGSESIDEEDQGSQISRFLEGY 365 (447)
Q Consensus 336 ~~~~y~~~~g~~~~~~~~~~~~i~~Fl~~~ 365 (447)
.++....+.| ..+.+.+.+|++..
T Consensus 115 ~G~~v~~~~G------~~~~e~l~~~l~~~ 138 (139)
T PRK10996 115 NGQVVDMLNG------AVPKAPFDSWLNEA 138 (139)
T ss_pred CCEEEEEEcC------CCCHHHHHHHHHHh
Confidence 6554444443 34567899998864
No 152
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.82 E-value=0.00024 Score=57.15 Aligned_cols=89 Identities=13% Similarity=0.171 Sum_probs=66.4
Q ss_pred ccCCeEEEEEECC----CChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCc--cchhhhhhCCCccccEEEEEe--CCe-
Q 013240 58 SSFDYILVDFYAP----WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD--KYSRLASKQEIDAFPTLKIFM--HGI- 128 (447)
Q Consensus 58 ~~~~~~lV~f~~~----~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~--~~~~l~~~~~i~~~Ptl~~~~--~g~- 128 (447)
++.++.+|++|++ ||..|+.... =.++.+.++. .+.+...|++ +..+++..+++.+||++.++. +++
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~---~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~ 90 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINT---RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRM 90 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHc---CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCce
Confidence 6779999999999 8999966531 1234444443 3778888875 347799999999999999983 332
Q ss_pred -eE-EecCCCCHHHHHHHHHHhcC
Q 013240 129 -PT-EYYGPRKAELLVRYLKKFVA 150 (447)
Q Consensus 129 -~~-~y~g~~~~~~i~~fi~~~~~ 150 (447)
.+ ...|..+++++...++..+.
T Consensus 91 ~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 91 TIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHh
Confidence 23 48999999999998877653
No 153
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.82 E-value=5.9e-05 Score=56.96 Aligned_cols=59 Identities=17% Similarity=0.286 Sum_probs=43.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccch-----hhhhhCCCccccEEEEEeCCee
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-----RLASKQEIDAFPTLKIFMHGIP 129 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~-----~l~~~~~i~~~Ptl~~~~~g~~ 129 (447)
++.|+++||++|+++.+.+.+.. .. ..+.+..|+-+.+. .+.+.+++.++|+++ .+|..
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~---~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~~ 64 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK---PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF--INGKF 64 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC---CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEE
Confidence 47899999999999999998865 22 23667777765443 266678999999984 46654
No 154
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.82 E-value=6.7e-05 Score=68.42 Aligned_cols=82 Identities=13% Similarity=0.257 Sum_probs=59.6
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEE----------------E----------------------
Q 013240 60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK----------------V---------------------- 101 (447)
Q Consensus 60 ~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~----------------V---------------------- 101 (447)
.+..++.|+.+.|++|+++++++.++.+. +-.+.+.. |
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~~----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNAL----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhcC----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 35779999999999999999998876431 10011110 0
Q ss_pred eC----ccchhhhhhCCCccccEEEEEeCCeeEEecCCCCHHHHHHHHHHh
Q 013240 102 DA----DKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKF 148 (447)
Q Consensus 102 d~----~~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~i~~fi~~~ 148 (447)
.| +++.++|+++||+++|+++ +.+|..+ .|...++.|.+++.+.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~--~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV--PGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCCeEe--eCCCCHHHHHHHHHHc
Confidence 12 3446789999999999999 6788655 7888999999988754
No 155
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.79 E-value=0.00015 Score=58.63 Aligned_cols=103 Identities=14% Similarity=0.101 Sum_probs=69.8
Q ss_pred CccccChhhHHhhhc-CCCcEEEEEEeCCChh-hHH--HHHHHHHHHHHhC--CC-ceEEEEeccchHhHHhhcCCCCCC
Q 013240 254 LSVPINQDTLNLLKD-DKRKIVLAIVEDETEE-KSQ--KLVTTLKAAASAN--RE-LVFCYVGIKQFADFADTFEANKKS 326 (447)
Q Consensus 254 ~~~~l~~~~~~~~~~-~~~~~vl~~~~~~~~~-~~~--~~~~~l~~~a~~~--~~-~~f~~vd~~~~~~~~~~~~i~~~~ 326 (447)
.+..+|.++|+.... .+.++|+.|...--.+ .-+ .....+.++|.++ .+ +.|+.||+++++++++.||+ .
T Consensus 10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I---~ 86 (120)
T cd03065 10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGL---D 86 (120)
T ss_pred ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCC---c
Confidence 355678888887544 4445555444321111 122 3345666777776 43 99999999999999999999 8
Q ss_pred CCceEEEEeCCccceecCCCCCCCcccchhHHHHHHHHHh
Q 013240 327 KLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 366 (447)
Q Consensus 327 ~~P~vvi~~~~~~y~~~~g~~~~~~~~~~~~i~~Fl~~~~ 366 (447)
..|+++++..++... +. +..+.+.|.+|+.+..
T Consensus 87 ~iPTl~lfk~G~~v~-~~------G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 87 EEDSIYVFKDDEVIE-YD------GEFAADTLVEFLLDLI 119 (120)
T ss_pred cccEEEEEECCEEEE-ee------CCCCHHHHHHHHHHHh
Confidence 899999998654333 43 3445779999998765
No 156
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.79 E-value=0.00015 Score=54.83 Aligned_cols=94 Identities=21% Similarity=0.287 Sum_probs=74.9
Q ss_pred hhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc--chhhhhhCCCc----ccc-EEE
Q 013240 50 ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--YSRLASKQEID----AFP-TLK 122 (447)
Q Consensus 50 ~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~--~~~l~~~~~i~----~~P-tl~ 122 (447)
-.+|..++....-+||.|...--. -......+.++|+.++|. -.++.|||.+ .+.||+++.+. .-| .|.
T Consensus 9 ~KdfKKLLRTr~NVLvLy~ks~k~-a~~~Lk~~~~~A~~vkG~---gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~Lk 84 (112)
T cd03067 9 HKDFKKLLRTRNNVLVLYSKSAKS-AEALLKLLSDVAQAVKGQ---GTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELK 84 (112)
T ss_pred hHHHHHHHhhcCcEEEEEecchhh-HHHHHHHHHHHHHHhcCc---eeEEEEecCChHHHHHHHHHccCCCCCCCcchhh
Confidence 478999998888899998866433 334556899999999886 5578899987 78999999998 444 466
Q ss_pred EEeCCeeE-EecCCCCHHHHHHHHHH
Q 013240 123 IFMHGIPT-EYYGPRKAELLVRYLKK 147 (447)
Q Consensus 123 ~~~~g~~~-~y~g~~~~~~i~~fi~~ 147 (447)
.|.+|... +|+-..+..+|+.|++.
T Consensus 85 HYKdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 85 HYKDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred cccCCCccccccchhhHHHHHHHhhC
Confidence 78889764 59999999999999864
No 157
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.79 E-value=0.00048 Score=55.32 Aligned_cols=98 Identities=11% Similarity=0.192 Sum_probs=72.8
Q ss_pred hhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCceEEEEeccchHhHHhhcCCCCCCCCceEEEEeCCccc
Q 013240 261 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENY 340 (447)
Q Consensus 261 ~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~~~~y 340 (447)
..+......+.++++.|+.+ ....-+.....+.+++++++++.|..||.+..+++++.+++ ...|+++++..++..
T Consensus 13 ~~~~~~i~~~~~vvV~f~a~-~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v---~~vPt~l~fk~G~~v 88 (113)
T cd02989 13 KEFFEIVKSSERVVCHFYHP-EFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNI---KVLPTVILFKNGKTV 88 (113)
T ss_pred HHHHHHHhCCCcEEEEEECC-CCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCC---ccCCEEEEEECCEEE
Confidence 66666656667888877754 44455677789999999998999999999999999999999 789999999876533
Q ss_pred eecCCCCCCC--cccchhHHHHHH
Q 013240 341 LTVIGSESID--EEDQGSQISRFL 362 (447)
Q Consensus 341 ~~~~g~~~~~--~~~~~~~i~~Fl 362 (447)
....|..... +..+.++|..|+
T Consensus 89 ~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 89 DRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEEECccccCCCCCCCHHHHHHHh
Confidence 3333432221 456677787776
No 158
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.78 E-value=8.1e-05 Score=62.94 Aligned_cols=85 Identities=19% Similarity=0.304 Sum_probs=57.9
Q ss_pred CCeEEe--ChhhHHHhHccCCeEEEEEECCCChhhhhhhH-HHH--HHHHHhhcCCCCeEEEEEeCccchhhhhhC----
Q 013240 43 GKVIEL--DESNFDSAISSFDYILVDFYAPWCGHCKRLAP-QLD--EAAPILAKLKEPIVIAKVDADKYSRLASKQ---- 113 (447)
Q Consensus 43 ~~v~~l--~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p-~~~--~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~---- 113 (447)
+.|--. +++.|+.+-++++|+||.++.+||+.|+.+.. .|. ++|+.++.. +.-++||.++.+++.+.|
T Consensus 18 ~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~---FI~VkvDree~Pdid~~y~~~~ 94 (163)
T PF03190_consen 18 NPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN---FIPVKVDREERPDIDKIYMNAV 94 (163)
T ss_dssp SSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH----EEEEEETTT-HHHHHHHHHHH
T ss_pred CCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC---EEEEEeccccCccHHHHHHHHH
Confidence 444433 56788899899999999999999999998775 443 667777653 778899999999998888
Q ss_pred ----CCccccEEEEEeC-CeeE
Q 013240 114 ----EIDAFPTLKIFMH-GIPT 130 (447)
Q Consensus 114 ----~i~~~Ptl~~~~~-g~~~ 130 (447)
|..|+|+.++..+ |+++
T Consensus 95 ~~~~~~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 95 QAMSGSGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp HHHHS---SSEEEEE-TTS-EE
T ss_pred HHhcCCCCCCceEEECCCCCee
Confidence 7889999999876 6665
No 159
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.78 E-value=0.00013 Score=60.99 Aligned_cols=81 Identities=14% Similarity=0.082 Sum_probs=59.1
Q ss_pred CCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCc---------------------cchhhhhhCCCcc
Q 013240 60 FDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD---------------------KYSRLASKQEIDA 117 (447)
Q Consensus 60 ~~~~lV~f~-~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~---------------------~~~~l~~~~~i~~ 117 (447)
+++++|.|| +.||+.|....|.+.++.+.+...+ +.+..|..+ .+..+++.||+..
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 100 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG--AVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWG 100 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcc
Confidence 689999999 5899999999999999998886533 556655543 3345777788888
Q ss_pred c---------cEEEEEeC-CeeEE-ecCCCCHHHHH
Q 013240 118 F---------PTLKIFMH-GIPTE-YYGPRKAELLV 142 (447)
Q Consensus 118 ~---------Ptl~~~~~-g~~~~-y~g~~~~~~i~ 142 (447)
. |+.+++.. |+... |.|....+++.
T Consensus 101 ~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~ 136 (140)
T cd03017 101 EKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAE 136 (140)
T ss_pred ccccccCCcceeEEEECCCCEEEEEEecCCccchHH
Confidence 7 88888864 76554 67765544443
No 160
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.78 E-value=0.00018 Score=54.63 Aligned_cols=76 Identities=17% Similarity=0.223 Sum_probs=54.2
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccch----hhhhhCC--CccccEEEEEeCCeeEEecCCC
Q 013240 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS----RLASKQE--IDAFPTLKIFMHGIPTEYYGPR 136 (447)
Q Consensus 63 ~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~----~l~~~~~--i~~~Ptl~~~~~g~~~~y~g~~ 136 (447)
-++.|+.+||++|+++...++++...+.+ +.+..+|.+.+. ++.+..+ +.++|+++ .+|+.+ |
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~----i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~i---g-- 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDD----FDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHI---G-- 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccC----CcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEE---c--
Confidence 36789999999999999999998865432 778888887653 4544444 58899986 467554 2
Q ss_pred CHHHHHHHHHHhc
Q 013240 137 KAELLVRYLKKFV 149 (447)
Q Consensus 137 ~~~~i~~fi~~~~ 149 (447)
..++|.++++..+
T Consensus 71 g~~~~~~~~~~~~ 83 (85)
T PRK11200 71 GCTDFEAYVKENL 83 (85)
T ss_pred CHHHHHHHHHHhc
Confidence 3466777666554
No 161
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.76 E-value=0.00011 Score=58.68 Aligned_cols=94 Identities=14% Similarity=0.172 Sum_probs=68.0
Q ss_pred ceecCChhHHHHHHHhcCCcccEEEeecC---Chh---HHHHHHHHhhhh---hHhHHhh------ccchhhhhhcCCC-
Q 013240 153 VSILNSDAEVSDFVENAGTFFPLFIGFGL---DES---VMSNLALKYKKK---AWFAVAK------DFSEDTMVLYDFD- 216 (447)
Q Consensus 153 v~~i~s~~~~~~~l~~~~~~~~~vi~f~~---~~~---~~~~~a~~~~~~---~~f~~~~------~~~~~~~~~~~i~- 216 (447)
++.++ .+++++++.+++. ++|-|+. -.. .++.+|.+|... ..++-+. ....+++.+|+|+
T Consensus 3 ~v~L~-~~nF~~~v~~~~~---vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~ 78 (116)
T cd03007 3 CVDLD-TVTFYKVIPKFKY---SLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDK 78 (116)
T ss_pred eeECC-hhhHHHHHhcCCc---EEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCc
Confidence 45565 4579999988764 5665654 334 799999888542 2222221 1246799999999
Q ss_pred -CCCeEEEEcCCC-CCcccccCC-CChHHHHHHHHhh
Q 013240 217 -KVPALVALQPSY-NEHNIFYGP-FDEEFLEEFIKQN 250 (447)
Q Consensus 217 -~~P~l~~~~~~~-~~~~~~~g~-~~~~~i~~fI~~~ 250 (447)
++|+|.+|+.+. ..+..|.|+ .+.+.|..||+++
T Consensus 79 ~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 79 ESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999999763 356789996 9999999999875
No 162
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.76 E-value=0.00028 Score=56.58 Aligned_cols=99 Identities=8% Similarity=0.074 Sum_probs=72.8
Q ss_pred CCccccChhhHHhh---hcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHhHH-hhcCCCCCCC
Q 013240 253 PLSVPINQDTLNLL---KDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFA-DTFEANKKSK 327 (447)
Q Consensus 253 p~~~~l~~~~~~~~---~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~-~~~~i~~~~~ 327 (447)
+.+.+++..+|+.. ...+.++++.|+. ......+.+...+.++|+.+++ +.|+.||+++....+ +.+++ ..
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA-~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I---~~ 84 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYA-PWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHF---FY 84 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEEC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCC---cc
Confidence 45678899999875 4566677777765 4566667788899999999887 899999999888898 58998 78
Q ss_pred CceEEEEeCCccceecCCCCCCCcccchhHHHHH
Q 013240 328 LPKMVVWDGNENYLTVIGSESIDEEDQGSQISRF 361 (447)
Q Consensus 328 ~P~vvi~~~~~~y~~~~g~~~~~~~~~~~~i~~F 361 (447)
+|++.++..++.-..+. +..+.+.|..|
T Consensus 85 ~PTl~lf~~g~~~~~y~------G~~~~~~i~~~ 112 (113)
T cd03006 85 FPVIHLYYRSRGPIEYK------GPMRAPYMEKF 112 (113)
T ss_pred cCEEEEEECCccceEEe------CCCCHHHHHhh
Confidence 99999997643222233 33445566655
No 163
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=97.75 E-value=7.9e-05 Score=59.18 Aligned_cols=94 Identities=18% Similarity=0.281 Sum_probs=69.8
Q ss_pred CceecCChhHHHHHHHhcCCcccEEEeecCCh-----hHHHHHHHHhhhhhHhHHhhccchhhhhhcCCCCCCeEEEEcC
Q 013240 152 DVSILNSDAEVSDFVENAGTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQP 226 (447)
Q Consensus 152 ~v~~i~s~~~~~~~l~~~~~~~~~vi~f~~~~-----~~~~~~a~~~~~~~~f~~~~~~~~~~~~~~~i~~~P~l~~~~~ 226 (447)
+++++.+.++++.++...+. +.+|||+.+. ..|..+|..+++.+.|+.. .+.++..++++.. |.+++|+|
T Consensus 1 ~v~~i~s~~ele~f~~~~~~--~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t--~~~~~~~~~~~~~-~~vvl~rp 75 (107)
T cd03068 1 PSKQLQTLKQVQEFLRDGDD--VIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHT--FDSEIFKSLKVSP-GQLVVFQP 75 (107)
T ss_pred CceEcCCHHHHHHHHhcCCC--EEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEE--ChHHHHHhcCCCC-CceEEECc
Confidence 36788899999999876522 5788887542 3788899999988877655 3567778888764 78999966
Q ss_pred C------CCCcccccCC-CChHH-HHHHHHhh
Q 013240 227 S------YNEHNIFYGP-FDEEF-LEEFIKQN 250 (447)
Q Consensus 227 ~------~~~~~~~~g~-~~~~~-i~~fI~~~ 250 (447)
. .+....|.|. ++.+. |..||+.|
T Consensus 76 ~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 76 EKFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred HHHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 3 3456678887 77756 99999875
No 164
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.74 E-value=0.00029 Score=56.61 Aligned_cols=104 Identities=15% Similarity=0.233 Sum_probs=73.4
Q ss_pred CccccChhhHHhhhcCC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCceEEEEeccchHhHHhhcCCCCCCCCce
Q 013240 254 LSVPINQDTLNLLKDDK---RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPK 330 (447)
Q Consensus 254 ~~~~l~~~~~~~~~~~~---~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~~i~~~~~~P~ 330 (447)
.+.+++..+|....... .++++.|+.+ ....-..+...++++|.++.++.|+.||+++. .+++.+++ ...|+
T Consensus 5 ~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~-~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i---~~~Pt 79 (113)
T cd02957 5 EVREISSKEFLEEVTKASKGTRVVVHFYEP-GFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDI---KVLPT 79 (113)
T ss_pred eEEEEcHHHHHHHHHccCCCCEEEEEEeCC-CCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCC---CcCCE
Confidence 45566777776644333 6777777653 44555677889999999999999999999887 89999999 78999
Q ss_pred EEEEeCCccceecCCCCCCC-cccchhHHHHHH
Q 013240 331 MVVWDGNENYLTVIGSESID-EEDQGSQISRFL 362 (447)
Q Consensus 331 vvi~~~~~~y~~~~g~~~~~-~~~~~~~i~~Fl 362 (447)
++++..++......|..+.. +..+.+.|.+|+
T Consensus 80 ~~~f~~G~~v~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 80 LLVYKNGELIDNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred EEEEECCEEEEEEecHHHhCCCCCCHHHHHHHh
Confidence 99998865444444433221 344556666654
No 165
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.72 E-value=0.00021 Score=57.38 Aligned_cols=74 Identities=18% Similarity=0.388 Sum_probs=49.3
Q ss_pred hhHHHhH----ccCCeEEEEEEC-------CCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccch-------hhhh-
Q 013240 51 SNFDSAI----SSFDYILVDFYA-------PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-------RLAS- 111 (447)
Q Consensus 51 ~~f~~~~----~~~~~~lV~f~~-------~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~-------~l~~- 111 (447)
++|.+++ +++++++|.|++ +||+.|....|...++-....+ ...+..|.....+ .+-.
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~---~~~lv~v~VG~r~~Wkdp~n~fR~~ 82 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE---NARLVYVEVGDRPEWKDPNNPFRTD 82 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST---TEEEEEEE---HHHHC-TTSHHHH-
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC---CceEEEEEcCCHHHhCCCCCCceEc
Confidence 4555655 345799999995 5999999999999998776433 3777777764221 2323
Q ss_pred -hCCCccccEEEEEeCC
Q 013240 112 -KQEIDAFPTLKIFMHG 127 (447)
Q Consensus 112 -~~~i~~~Ptl~~~~~g 127 (447)
+++++++|||+-+..+
T Consensus 83 p~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 83 PDLKLKGIPTLIRWETG 99 (119)
T ss_dssp -CC---SSSEEEECTSS
T ss_pred ceeeeeecceEEEECCC
Confidence 4899999999999776
No 166
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.72 E-value=0.00059 Score=60.01 Aligned_cols=43 Identities=21% Similarity=0.060 Sum_probs=35.0
Q ss_pred CCe-EEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCc
Q 013240 60 FDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104 (447)
Q Consensus 60 ~~~-~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~ 104 (447)
.++ +++.++++||+.|+...|.+.++.+++++.+ +.+..|+|+
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~g--v~vv~vs~~ 83 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQG--LEILAFPCN 83 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCC--cEEEEEecc
Confidence 454 4556699999999999999999999987643 888888874
No 167
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=97.72 E-value=0.00067 Score=51.87 Aligned_cols=101 Identities=16% Similarity=0.242 Sum_probs=66.6
Q ss_pred ccChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHh----C----CC--ceEEEEeccchHhHHhhc-CCCCC
Q 013240 257 PINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASA----N----RE--LVFCYVGIKQFADFADTF-EANKK 325 (447)
Q Consensus 257 ~l~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~----~----~~--~~f~~vd~~~~~~~~~~~-~i~~~ 325 (447)
.+++.+...+. ..||+++|.+..+....+.....|+.+|.+ + .+ +.|...--.+-.++++.| ++ +
T Consensus 3 ~Lse~~a~~Ln--~~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~tdsLRDf~nL--~ 78 (116)
T cd03071 3 ELSESNAVQLN--EGPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNL--P 78 (116)
T ss_pred cccHHHHHhhc--CCceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHHHHHHHhcCC--C
Confidence 45666665553 379999898654443566666677766653 1 12 444433223446667665 67 4
Q ss_pred CCCceEEEEeCC-ccceecCCCCCCCcccchhHHHHHHHHHh
Q 013240 326 SKLPKMVVWDGN-ENYLTVIGSESIDEEDQGSQISRFLEGYR 366 (447)
Q Consensus 326 ~~~P~vvi~~~~-~~y~~~~g~~~~~~~~~~~~i~~Fl~~~~ 366 (447)
..-|.++|++.. .+.+.++ .+++|.+.+.+|+.+|+
T Consensus 79 d~~P~LviLDip~r~~~v~~-----~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 79 EAAPLLTILDMSARAKYVMD-----VEEITPAIVEAFVSDFL 115 (116)
T ss_pred ccCceEEEEeccccceEeCc-----hHhcCHHHHHHHHHHhh
Confidence 789999999984 4455553 57899999999999986
No 168
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.71 E-value=0.00019 Score=58.94 Aligned_cols=86 Identities=23% Similarity=0.382 Sum_probs=53.3
Q ss_pred eChhhHHHhHc-cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhC---CCccccEEEE
Q 013240 48 LDESNFDSAIS-SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQ---EIDAFPTLKI 123 (447)
Q Consensus 48 l~~~~f~~~~~-~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~---~i~~~Ptl~~ 123 (447)
++++....+-. ..+..++-|..+|||.|...-|.+.++++... .+.+--+.-++++++-.+| |....|++++
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p----~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~ 103 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP----NIEVRIILRDENKELMDQYLTNGGRSIPTFIF 103 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T----TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEE
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC----CCeEEEEEecCChhHHHHHHhCCCeecCEEEE
Confidence 33444443332 34567888999999999999999999998642 3777777777888876654 7888999999
Q ss_pred EeC-CeeEEecCCCC
Q 013240 124 FMH-GIPTEYYGPRK 137 (447)
Q Consensus 124 ~~~-g~~~~y~g~~~ 137 (447)
+.. |+...--|+|-
T Consensus 104 ~d~~~~~lg~wgerP 118 (129)
T PF14595_consen 104 LDKDGKELGRWGERP 118 (129)
T ss_dssp E-TT--EEEEEESS-
T ss_pred EcCCCCEeEEEcCCC
Confidence 965 67776667664
No 169
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.71 E-value=0.00025 Score=59.86 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=35.7
Q ss_pred CeEEEEE-ECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchh
Q 013240 61 DYILVDF-YAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR 108 (447)
Q Consensus 61 ~~~lV~f-~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~ 108 (447)
++++|.| ++.||+.|+...|.+.++.+++...+ +.+..|+.+....
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~--v~vv~V~~~~~~~ 70 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALG--VELVAVGPESPEK 70 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcC--eEEEEEeCCCHHH
Confidence 4555555 59999999999999999999987543 8888888765443
No 170
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.70 E-value=0.0005 Score=53.61 Aligned_cols=97 Identities=7% Similarity=0.203 Sum_probs=68.3
Q ss_pred ChhhHHhhh-cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHhHHhhcCCCCCCCCceEEEEeC
Q 013240 259 NQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 336 (447)
Q Consensus 259 ~~~~~~~~~-~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~ 336 (447)
+.+.+.... ..++++++.|+. .....-..+...++++++.+.+ +.|+.+|+...+.+++.|++ ...|++++++.
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~-~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~P~~~~~~~ 77 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWA-PWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGI---RSIPTLLLFKN 77 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEEC-CCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCC---CcCCEEEEEeC
Confidence 345555533 334577777765 3455556777788888888775 99999999998999999999 68999999976
Q ss_pred CccceecCCCCCCCcccchhHHHHHHHHH
Q 013240 337 NENYLTVIGSESIDEEDQGSQISRFLEGY 365 (447)
Q Consensus 337 ~~~y~~~~g~~~~~~~~~~~~i~~Fl~~~ 365 (447)
++......| ..+.+.+.+|+++.
T Consensus 78 g~~~~~~~g------~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 78 GKEVDRSVG------ALPKAALKQLINKN 100 (101)
T ss_pred CcEeeeecC------CCCHHHHHHHHHhh
Confidence 543333332 23457888888754
No 171
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.70 E-value=0.00037 Score=54.16 Aligned_cols=96 Identities=10% Similarity=0.198 Sum_probs=71.4
Q ss_pred ccChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--C-CceEEEEeccchHhHHhhcCCCCCCCCceEEE
Q 013240 257 PINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASAN--R-ELVFCYVGIKQFADFADTFEANKKSKLPKMVV 333 (447)
Q Consensus 257 ~l~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~--~-~~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi 333 (447)
.++..++......+++.++.|+.+ .......+...+.+++..+ . ++.|+.+|+...+.+++.+++ ...|++++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i---~~~Pt~~~ 77 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAP-WCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGV---RGYPTIKL 77 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECC-CCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCC---CCCCEEEE
Confidence 467778888777777777777753 4556677778888888888 3 399999999988999999999 78999999
Q ss_pred EeCC-ccceecCCCCCCCcccchhHHHHHH
Q 013240 334 WDGN-ENYLTVIGSESIDEEDQGSQISRFL 362 (447)
Q Consensus 334 ~~~~-~~y~~~~g~~~~~~~~~~~~i~~Fl 362 (447)
++.+ .....+. +..+.+.+.+|+
T Consensus 78 ~~~~~~~~~~~~------g~~~~~~i~~~~ 101 (101)
T cd02961 78 FPNGSKEPVKYE------GPRTLESLVEFI 101 (101)
T ss_pred EcCCCcccccCC------CCcCHHHHHhhC
Confidence 9987 3333333 233456666653
No 172
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.70 E-value=0.00065 Score=61.32 Aligned_cols=105 Identities=12% Similarity=0.165 Sum_probs=79.3
Q ss_pred CccccChhhHHhhhcC-----CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHhHHhhcCCCCCCC
Q 013240 254 LSVPINQDTLNLLKDD-----KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSK 327 (447)
Q Consensus 254 ~~~~l~~~~~~~~~~~-----~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~~i~~~~~ 327 (447)
.+.+++..+|+.+... ..++++.|+. .....-......+.++|+++++ +.|+.+|+.+++++++.+++ ..
T Consensus 31 ~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyA-pWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I---~~ 106 (224)
T PTZ00443 31 ALVLLNDKNFEKLTQASTGATTGPWFVKFYA-PWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAI---KG 106 (224)
T ss_pred CcEECCHHHHHHHHhhhcccCCCCEEEEEEC-CCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCC---Cc
Confidence 4668888888876432 3567777765 4555567777889999999887 89999999999999999999 78
Q ss_pred CceEEEEeCCccceecCCCCCCCcccchhHHHHHHHHHhcC
Q 013240 328 LPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREG 368 (447)
Q Consensus 328 ~P~vvi~~~~~~y~~~~g~~~~~~~~~~~~i~~Fl~~~~~g 368 (447)
+|++++++.++.+.... +..+.+.+.+|+.+-...
T Consensus 107 ~PTl~~f~~G~~v~~~~------G~~s~e~L~~fi~~~~~~ 141 (224)
T PTZ00443 107 YPTLLLFDKGKMYQYEG------GDRSTEKLAAFALGDFKK 141 (224)
T ss_pred CCEEEEEECCEEEEeeC------CCCCHHHHHHHHHHHHHh
Confidence 99999999654333332 345677899998887743
No 173
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.69 E-value=0.00084 Score=55.28 Aligned_cols=109 Identities=15% Similarity=0.201 Sum_probs=81.5
Q ss_pred CeEEeChhhHHH-hHccCCeEEEEEECC--CCh-hh-hhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCc--
Q 013240 44 KVIELDESNFDS-AISSFDYILVDFYAP--WCG-HC-KRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID-- 116 (447)
Q Consensus 44 ~v~~l~~~~f~~-~~~~~~~~lV~f~~~--~C~-~C-~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~-- 116 (447)
.|++|+++++-. .=.+++..+|.|... .|. .+ ..+...+.++|+.+++. ++.|+.+|.+....+.+.||+.
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk--~i~Fv~vd~~~~~~~~~~fgl~~~ 80 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKK--PWGWLWTEAGAQLDLEEALNIGGF 80 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCC--cEEEEEEeCcccHHHHHHcCCCcc
Confidence 688888776643 445556666666432 232 12 46788899999988653 3999999999999999999996
Q ss_pred cccEEEEEeCCe-eEE-ecCCCCHHHHHHHHHHhcCCCce
Q 013240 117 AFPTLKIFMHGI-PTE-YYGPRKAELLVRYLKKFVAPDVS 154 (447)
Q Consensus 117 ~~Ptl~~~~~g~-~~~-y~g~~~~~~i~~fi~~~~~~~v~ 154 (447)
++|+++++...+ ... +.|..+.++|.+|+...+...+.
T Consensus 81 ~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl~ 120 (130)
T cd02983 81 GYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRGP 120 (130)
T ss_pred CCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCcc
Confidence 499999997754 333 67999999999999999876653
No 174
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.67 E-value=0.0004 Score=60.50 Aligned_cols=87 Identities=16% Similarity=0.194 Sum_probs=61.1
Q ss_pred CCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc----------------------------chhhh
Q 013240 60 FDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----------------------------YSRLA 110 (447)
Q Consensus 60 ~~~~lV~f~-~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~----------------------------~~~l~ 110 (447)
.++++|.|| +.||++|....|.+.++++.+...+ +.+..|+++. ...++
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~--v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 106 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN--AEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKIS 106 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHH
Confidence 489999999 8999999999999999999987643 5566666542 22455
Q ss_pred hhCCCc------cccEEEEEeC-CeeEE-ecC----CCCHHHHHHHHHHh
Q 013240 111 SKQEID------AFPTLKIFMH-GIPTE-YYG----PRKAELLVRYLKKF 148 (447)
Q Consensus 111 ~~~~i~------~~Ptl~~~~~-g~~~~-y~g----~~~~~~i~~fi~~~ 148 (447)
+.|++. ..|+.+++.. |+... +.+ .+..++|.+.++..
T Consensus 107 ~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 107 RDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 667775 4678888864 65443 422 34567777777554
No 175
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.65 E-value=0.00084 Score=59.02 Aligned_cols=99 Identities=21% Similarity=0.221 Sum_probs=68.9
Q ss_pred CCeEEeChhhHHHhHccCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCc-----------------
Q 013240 43 GKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD----------------- 104 (447)
Q Consensus 43 ~~v~~l~~~~f~~~~~~~~~~lV~f~-~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~----------------- 104 (447)
+....++-++| ..+++++.|| +.||+.|....+.+.+..+++...+ +.+..|+++
T Consensus 19 g~~~~v~L~d~-----~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g--~~vigIS~D~~~~~~a~~~~~~~~~~ 91 (187)
T PRK10382 19 GEFIEVTEKDT-----EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG--VDVYSVSTDTHFTHKAWHSSSETIAK 91 (187)
T ss_pred CcceEEEHHHh-----CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC--CEEEEEeCCCHHHHHHHHHhhccccC
Confidence 44555554443 3468999999 9999999999999999999886543 444444443
Q ss_pred --------cchhhhhhCCC----ccc--cEEEEEe-CCeeEE---e--cCCCCHHHHHHHHHHh
Q 013240 105 --------KYSRLASKQEI----DAF--PTLKIFM-HGIPTE---Y--YGPRKAELLVRYLKKF 148 (447)
Q Consensus 105 --------~~~~l~~~~~i----~~~--Ptl~~~~-~g~~~~---y--~g~~~~~~i~~fi~~~ 148 (447)
.+.++++.||+ .+. |+.+++. +|+... + ...++.+++.+.++.+
T Consensus 92 l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 92 IKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 34578888998 355 9999997 465442 2 2346888888777544
No 176
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.64 E-value=0.00053 Score=58.44 Aligned_cols=79 Identities=18% Similarity=0.163 Sum_probs=53.5
Q ss_pred cCCeEEEEEECC-CChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc---------------------chhhhhhCCCc
Q 013240 59 SFDYILVDFYAP-WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---------------------YSRLASKQEID 116 (447)
Q Consensus 59 ~~~~~lV~f~~~-~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~---------------------~~~l~~~~~i~ 116 (447)
+.++++|.||+. ||+.|....+.+.++.+.+++.+ +.+..|+.+. ...+.+.||+.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~--v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 106 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG--VVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVW 106 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCC
Confidence 357899999975 78899999999999998887643 6666666532 23466667765
Q ss_pred cc------------cEEEEEe-CCeeEE-ecCCCCHH
Q 013240 117 AF------------PTLKIFM-HGIPTE-YYGPRKAE 139 (447)
Q Consensus 117 ~~------------Ptl~~~~-~g~~~~-y~g~~~~~ 139 (447)
.. |+.+++. +|+... |.|....+
T Consensus 107 ~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~ 143 (154)
T PRK09437 107 GEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSN 143 (154)
T ss_pred cccccccccccCcceEEEEECCCCEEEEEEcCCCcch
Confidence 43 5555664 576654 66654333
No 177
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.64 E-value=0.0025 Score=59.64 Aligned_cols=200 Identities=13% Similarity=0.118 Sum_probs=115.2
Q ss_pred CceecCChhHHHHHHHhcCCcccEEEeecCCh----h---------HHHHHHHHhhhh--hHhHHh-hccchhhhhhcCC
Q 013240 152 DVSILNSDAEVSDFVENAGTFFPLFIGFGLDE----S---------VMSNLALKYKKK--AWFAVA-KDFSEDTMVLYDF 215 (447)
Q Consensus 152 ~v~~i~s~~~~~~~l~~~~~~~~~vi~f~~~~----~---------~~~~~a~~~~~~--~~f~~~-~~~~~~~~~~~~i 215 (447)
.+..++ +.++++.+.+.+. .++.|.... . ..-++|++.... .-|+.+ ...+..+++++|+
T Consensus 35 RVi~Ln-eKNfk~~lKkyd~---l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv 110 (383)
T PF01216_consen 35 RVIDLN-EKNFKRALKKYDV---LVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGV 110 (383)
T ss_dssp -CEEE--TTTHHHHHHH-SE---EEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT-
T ss_pred ceEEcc-hhHHHHHHHhhcE---EEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCc
Confidence 366675 6789999988874 566555321 1 233344444332 233333 2335778999999
Q ss_pred CCCCeEEEEcCCCCCcccccCCCChHHHHHHHHhhCCCCccccCh-hhHHhhhc-CCCcEEEEEEeCCChhhHHHHHHHH
Q 013240 216 DKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQ-DTLNLLKD-DKRKIVLAIVEDETEEKSQKLVTTL 293 (447)
Q Consensus 216 ~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~fI~~~~~p~~~~l~~-~~~~~~~~-~~~~~vl~~~~~~~~~~~~~~~~~l 293 (447)
...+++.+|+. +....|.|.++++.+..||..-.-.++..++. ..+..+.. ...+-++.+|.....+ ..+.+
T Consensus 111 ~E~~SiyVfkd--~~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~----~yk~F 184 (383)
T PF01216_consen 111 EEEGSIYVFKD--GEVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSE----HYKEF 184 (383)
T ss_dssp -STTEEEEEET--TEEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSH----HHHHH
T ss_pred cccCcEEEEEC--CcEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcH----HHHHH
Confidence 99999999997 56788999999999999999987777776664 33333322 2257777888654433 45678
Q ss_pred HHHHHhCCC-ceEEEEeccchHhHHhhcCCCCCCCCceEEEEeCCccceecCCCCCCCcccchhHHHHHHHHHhcCcccc
Q 013240 294 KAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQ 372 (447)
Q Consensus 294 ~~~a~~~~~-~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~~~~y~~~~g~~~~~~~~~~~~i~~Fl~~~~~gkl~~ 372 (447)
..+|..+.. +.|..+- .+.+++.+++ + .--|-++++-..-.... .....+.+.+.+|+++-..-.+++
T Consensus 185 eeAAe~F~p~IkFfAtf---d~~vAk~L~l-K---~nev~fyepF~~~pi~i----p~~p~~e~e~~~fi~~h~rptlrk 253 (383)
T PF01216_consen 185 EEAAEHFQPYIKFFATF---DKKVAKKLGL-K---LNEVDFYEPFMDEPITI----PGKPYTEEELVEFIEEHKRPTLRK 253 (383)
T ss_dssp HHHHHHCTTTSEEEEE----SHHHHHHHT--S---TT-EEEE-TTSSSEEEE----SSSS--HHHHHHHHHHT-S-SEEE
T ss_pred HHHHHhhcCceeEEEEe---cchhhhhcCc-c---ccceeeeccccCCCccC----CCCCCCHHHHHHHHHHhchhHhhh
Confidence 889999976 7776543 2779999988 2 34566777632111111 123456778999998776555444
No 178
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.64 E-value=0.00038 Score=63.42 Aligned_cols=84 Identities=18% Similarity=0.161 Sum_probs=65.0
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc-----------chhhhhhCCCccccEEEEEeCCe
Q 013240 60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-----------YSRLASKQEIDAFPTLKIFMHGI 128 (447)
Q Consensus 60 ~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~-----------~~~l~~~~~i~~~Ptl~~~~~g~ 128 (447)
++..|+.||...|++|+.+.|.+..+++.. + +.+..|+.|. +...++++||..+|++++.....
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-g----~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t 217 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTY-G----LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKS 217 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHh-C----CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCC
Confidence 468999999999999999999999999875 3 4555555542 33467899999999999998753
Q ss_pred --eEE-ecCCCCHHHHHHHHHHh
Q 013240 129 --PTE-YYGPRKAELLVRYLKKF 148 (447)
Q Consensus 129 --~~~-y~g~~~~~~i~~fi~~~ 148 (447)
... -.|..+.++|.+-+...
T Consensus 218 ~~~~pv~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 218 GSVRPLSYGFITQDDLAKRFLNV 240 (248)
T ss_pred CcEEEEeeccCCHHHHHHHHHHH
Confidence 333 47889998887766544
No 179
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.62 E-value=0.00042 Score=72.01 Aligned_cols=94 Identities=13% Similarity=0.214 Sum_probs=73.6
Q ss_pred eEEeChhhHHHhHccCCeEEE-EEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEE
Q 013240 45 VIELDESNFDSAISSFDYILV-DFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123 (447)
Q Consensus 45 v~~l~~~~f~~~~~~~~~~lV-~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~ 123 (447)
-..|+++..+.+-+=++++-| .|.+++|++|......+.+++.... +|..-.+|....++++++|+|.++|++++
T Consensus 460 ~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~----~i~~~~i~~~~~~~~~~~~~v~~vP~~~i 535 (555)
T TIGR03143 460 GQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP----NVEAEMIDVSHFPDLKDEYGIMSVPAIVV 535 (555)
T ss_pred CCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC----CceEEEEECcccHHHHHhCCceecCEEEE
Confidence 345566666655544566645 4579999999999888888887632 48899999999999999999999999987
Q ss_pred EeCCeeEEecCCCCHHHHHHHH
Q 013240 124 FMHGIPTEYYGPRKAELLVRYL 145 (447)
Q Consensus 124 ~~~g~~~~y~g~~~~~~i~~fi 145 (447)
+|+ ..+.|..+.++|.+|+
T Consensus 536 --~~~-~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 536 --DDQ-QVYFGKKTIEEMLELI 554 (555)
T ss_pred --CCE-EEEeeCCCHHHHHHhh
Confidence 555 3477988999998886
No 180
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.60 E-value=0.00032 Score=51.02 Aligned_cols=67 Identities=22% Similarity=0.307 Sum_probs=44.9
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhh----CCCccccEEEEEeCCeeEEecCCCCHH
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASK----QEIDAFPTLKIFMHGIPTEYYGPRKAE 139 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~----~~i~~~Ptl~~~~~g~~~~y~g~~~~~ 139 (447)
++.|+++||++|+.+.+.+.+. + +.+..++.+.+++.... .++.++|++.+ +|. ...| .+..
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~----i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~--~i~g-~~~~ 67 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----G----IPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE--HLSG-FRPD 67 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----C----CCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE--EEec-CCHH
Confidence 5789999999999987777652 2 56677888766554443 47889999976 442 2233 4455
Q ss_pred HHHHH
Q 013240 140 LLVRY 144 (447)
Q Consensus 140 ~i~~f 144 (447)
.|.++
T Consensus 68 ~l~~~ 72 (73)
T cd02976 68 KLRAL 72 (73)
T ss_pred HHHhh
Confidence 55554
No 181
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.58 E-value=0.00052 Score=54.00 Aligned_cols=97 Identities=11% Similarity=0.230 Sum_probs=70.3
Q ss_pred cccChhhHHhhhcCCC-cEEEEEEeCCChhhHHHHHHHHHHHHHhCC---CceEEEEeccc-hHhHHhhcCCCCCCCCce
Q 013240 256 VPINQDTLNLLKDDKR-KIVLAIVEDETEEKSQKLVTTLKAAASANR---ELVFCYVGIKQ-FADFADTFEANKKSKLPK 330 (447)
Q Consensus 256 ~~l~~~~~~~~~~~~~-~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~---~~~f~~vd~~~-~~~~~~~~~i~~~~~~P~ 330 (447)
.+++..+++....... ++++.|+. .....-.++.+.+..+++.++ ++.|+.+|+.. ++.+++.+++ ...|+
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~v~f~a-~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i---~~~P~ 78 (105)
T cd02998 3 VELTDSNFDKVVGDDKKDVLVEFYA-PWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGV---SGFPT 78 (105)
T ss_pred EEcchhcHHHHhcCCCCcEEEEEEC-CCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCC---CCcCE
Confidence 4667777877654444 66666664 455555677788888888875 38999999998 8999999999 78999
Q ss_pred EEEEeCCc-cceecCCCCCCCcccchhHHHHHH
Q 013240 331 MVVWDGNE-NYLTVIGSESIDEEDQGSQISRFL 362 (447)
Q Consensus 331 vvi~~~~~-~y~~~~g~~~~~~~~~~~~i~~Fl 362 (447)
+++++.++ ....+. +..+.+.|.+|+
T Consensus 79 ~~~~~~~~~~~~~~~------g~~~~~~l~~~i 105 (105)
T cd02998 79 LKFFPKGSTEPVKYE------GGRDLEDLVKFV 105 (105)
T ss_pred EEEEeCCCCCccccC------CccCHHHHHhhC
Confidence 99998763 333333 345567888774
No 182
>PRK09381 trxA thioredoxin; Provisional
Probab=97.58 E-value=0.0012 Score=52.60 Aligned_cols=102 Identities=16% Similarity=0.249 Sum_probs=74.8
Q ss_pred ccccChhhHHh-hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHhHHhhcCCCCCCCCceEE
Q 013240 255 SVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 332 (447)
Q Consensus 255 ~~~l~~~~~~~-~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~~i~~~~~~P~vv 332 (447)
+.+++..++.. +...+.++++.|+. .....-......++++++++.+ +.|+.+|++..+.+++.+++ ...|+++
T Consensus 5 v~~~~~~~~~~~v~~~~~~vvv~f~~-~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~~ 80 (109)
T PRK09381 5 IIHLTDDSFDTDVLKADGAILVDFWA-EWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI---RGIPTLL 80 (109)
T ss_pred ceeeChhhHHHHHhcCCCeEEEEEEC-CCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCC---CcCCEEE
Confidence 45566677764 45556777777775 3555567778889999999876 89999999998999999998 7899999
Q ss_pred EEeCCccceecCCCCCCCcccchhHHHHHHHHHh
Q 013240 333 VWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 366 (447)
Q Consensus 333 i~~~~~~y~~~~g~~~~~~~~~~~~i~~Fl~~~~ 366 (447)
+++.++....+.| ..+.+.|..|++..+
T Consensus 81 ~~~~G~~~~~~~G------~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 81 LFKNGEVAATKVG------ALSKGQLKEFLDANL 108 (109)
T ss_pred EEeCCeEEEEecC------CCCHHHHHHHHHHhc
Confidence 9975543333333 344668888887654
No 183
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=97.54 E-value=0.0024 Score=58.24 Aligned_cols=165 Identities=12% Similarity=0.143 Sum_probs=101.5
Q ss_pred HHHHhcCCcccEEEeecCC--------hhHHHHHHHHhhh---hhHhHHh-hccchhhhhhcCCCCCCeEEEEcCCCCCc
Q 013240 164 DFVENAGTFFPLFIGFGLD--------ESVMSNLALKYKK---KAWFAVA-KDFSEDTMVLYDFDKVPALVALQPSYNEH 231 (447)
Q Consensus 164 ~~l~~~~~~~~~vi~f~~~--------~~~~~~~a~~~~~---~~~f~~~-~~~~~~~~~~~~i~~~P~l~~~~~~~~~~ 231 (447)
+|+...+. ..|++.|+.. ++++.++...+++ +...+-. .+.-+.++.+|++.++|+|.+++. +..
T Consensus 36 kFkdnkdd-diW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kg--d~a 112 (468)
T KOG4277|consen 36 KFKDNKDD-DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKG--DHA 112 (468)
T ss_pred HhhhcccC-CeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecC--Cee
Confidence 55554433 3599988643 2355555555543 2222211 112356888999999999999986 456
Q ss_pred ccccCCCChHHHHHHHHhhCCCCccccCh--hhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCceEEEEe
Q 013240 232 NIFYGPFDEEFLEEFIKQNFLPLSVPINQ--DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVG 309 (447)
Q Consensus 232 ~~~~g~~~~~~i~~fI~~~~~p~~~~l~~--~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd 309 (447)
..|.|+.+.+.|.+|.....-|++..++. -.+..+...++|..++|-. .+.+-. +.+-.+|... +.+++..
T Consensus 113 ~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gt-ge~PL~----d~fidAASe~--~~~a~Ff 185 (468)
T KOG4277|consen 113 IDYRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFGT-GEGPLF----DAFIDAASEK--FSVARFF 185 (468)
T ss_pred eecCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEEeC-CCCcHH----HHHHHHhhhh--eeeeeee
Confidence 78999999999999999999999998876 4456677777888776642 333333 3344444432 3444443
Q ss_pred ccchHhHHhhcCCCCCCCCceEEEEeCCcccee
Q 013240 310 IKQFADFADTFEANKKSKLPKMVVWDGNENYLT 342 (447)
Q Consensus 310 ~~~~~~~~~~~~i~~~~~~P~vvi~~~~~~y~~ 342 (447)
... .+.+-... +-...|+++++..+ .|..
T Consensus 186 Sas-eeVaPe~~--~~kempaV~VFKDe-tf~i 214 (468)
T KOG4277|consen 186 SAS-EEVAPEEN--DAKEMPAVAVFKDE-TFEI 214 (468)
T ss_pred ccc-cccCCccc--chhhccceEEEccc-eeEE
Confidence 322 22322211 22567899888764 3443
No 184
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.00055 Score=53.62 Aligned_cols=74 Identities=23% Similarity=0.401 Sum_probs=54.7
Q ss_pred hhhHHHhH---ccCCeEEEEEEC--------CCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccc-------hhhhh
Q 013240 50 ESNFDSAI---SSFDYILVDFYA--------PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-------SRLAS 111 (447)
Q Consensus 50 ~~~f~~~~---~~~~~~lV~f~~--------~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~-------~~l~~ 111 (447)
.+.|++.+ .+++-++|+|++ +||+.|.+++|.+.++-+.. ..++.|..|+..+- ..+-.
T Consensus 12 ~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~a---p~~~~~v~v~VG~rp~Wk~p~n~FR~ 88 (128)
T KOG3425|consen 12 YESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHA---PEDVHFVHVYVGNRPYWKDPANPFRK 88 (128)
T ss_pred HHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhC---CCceEEEEEEecCCCcccCCCCcccc
Confidence 35577766 344569999996 69999999999999988743 34599999998542 23444
Q ss_pred hCCC-ccccEEEEEeC
Q 013240 112 KQEI-DAFPTLKIFMH 126 (447)
Q Consensus 112 ~~~i-~~~Ptl~~~~~ 126 (447)
..++ .++|||.=+.+
T Consensus 89 d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 89 DPGILTAVPTLLRWKR 104 (128)
T ss_pred CCCceeecceeeEEcC
Confidence 5566 88999987764
No 185
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.51 E-value=0.00083 Score=52.76 Aligned_cols=97 Identities=9% Similarity=0.197 Sum_probs=68.6
Q ss_pred ccccChhhHHhhh-cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC---ceEEEEeccchHhHHhhcCCCCCCCCce
Q 013240 255 SVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFADTFEANKKSKLPK 330 (447)
Q Consensus 255 ~~~l~~~~~~~~~-~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~f~~vd~~~~~~~~~~~~i~~~~~~P~ 330 (447)
+..++..+++... ..++++++.|+. ......+.+...+.++++.+++ +.|+.+|+... +.+..+++ ...|+
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~---~~~Pt 76 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYA-PWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVV---DGFPT 76 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEEC-CCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccC---CCCCE
Confidence 4578888887754 444677766665 4556667788889999988754 89999999875 56777776 78999
Q ss_pred EEEEeCCc--cceecCCCCCCCcccchhHHHHHH
Q 013240 331 MVVWDGNE--NYLTVIGSESIDEEDQGSQISRFL 362 (447)
Q Consensus 331 vvi~~~~~--~y~~~~g~~~~~~~~~~~~i~~Fl 362 (447)
++++..++ ....+. ++.+.+.|.+||
T Consensus 77 ~~~~~~~~~~~~~~~~------g~~~~~~l~~fi 104 (104)
T cd02995 77 ILFFPAGDKSNPIKYE------GDRTLEDLIKFI 104 (104)
T ss_pred EEEEcCCCcCCceEcc------CCcCHHHHHhhC
Confidence 99998764 232333 345566777774
No 186
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.50 E-value=0.00082 Score=52.67 Aligned_cols=96 Identities=11% Similarity=0.218 Sum_probs=67.9
Q ss_pred cccChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC----CceEEEEeccchHhHHhhcCCCCCCCCceE
Q 013240 256 VPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR----ELVFCYVGIKQFADFADTFEANKKSKLPKM 331 (447)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~----~~~f~~vd~~~~~~~~~~~~i~~~~~~P~v 331 (447)
.+++.++++.....+ ++++.|+. .....-+.....+.++++++. ++.|+.+|++..+..++.+++ ...|++
T Consensus 3 ~~l~~~~f~~~~~~~-~~lv~f~a-~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~ 77 (102)
T cd03005 3 LELTEDNFDHHIAEG-NHFVKFFA-PWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQV---RGYPTL 77 (102)
T ss_pred eECCHHHHHHHhhcC-CEEEEEEC-CCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCC---CcCCEE
Confidence 467888888876554 56666654 345555667777888888764 389999999988999999998 789999
Q ss_pred EEEeCCccceecCCCCCCCcccchhHHHHHH
Q 013240 332 VVWDGNENYLTVIGSESIDEEDQGSQISRFL 362 (447)
Q Consensus 332 vi~~~~~~y~~~~g~~~~~~~~~~~~i~~Fl 362 (447)
+++..+..-..+.| ..+.+.|.+||
T Consensus 78 ~~~~~g~~~~~~~G------~~~~~~l~~~i 102 (102)
T cd03005 78 LLFKDGEKVDKYKG------TRDLDSLKEFV 102 (102)
T ss_pred EEEeCCCeeeEeeC------CCCHHHHHhhC
Confidence 99975543333433 34455777664
No 187
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.49 E-value=0.00084 Score=52.79 Aligned_cols=98 Identities=11% Similarity=0.230 Sum_probs=70.0
Q ss_pred ccccChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC--C-ceEEEEeccc--hHhHHhhcCCCCCCCCc
Q 013240 255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR--E-LVFCYVGIKQ--FADFADTFEANKKSKLP 329 (447)
Q Consensus 255 ~~~l~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~--~-~~f~~vd~~~--~~~~~~~~~i~~~~~~P 329 (447)
+.+++..+++.....+++.++.|+.+ ....-.+....+..+++.+. + +.|+.+|+.. .+.+++.+++ ...|
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i---~~~P 77 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAP-WCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV---KGFP 77 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECC-CCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCC---cccc
Confidence 34677788888777777777777753 45555666677777777665 3 8899999987 8999999999 6899
Q ss_pred eEEEEeCCccceecCCCCCCCcccchhHHHHHH
Q 013240 330 KMVVWDGNENYLTVIGSESIDEEDQGSQISRFL 362 (447)
Q Consensus 330 ~vvi~~~~~~y~~~~g~~~~~~~~~~~~i~~Fl 362 (447)
++++++.++.-..+.| ..+.+.+.+|+
T Consensus 78 t~~~~~~g~~~~~~~g------~~~~~~l~~~l 104 (104)
T cd02997 78 TFKYFENGKFVEKYEG------ERTAEDIIEFM 104 (104)
T ss_pred EEEEEeCCCeeEEeCC------CCCHHHHHhhC
Confidence 9999986543333433 34456777664
No 188
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.47 E-value=0.00097 Score=53.25 Aligned_cols=97 Identities=14% Similarity=0.157 Sum_probs=71.7
Q ss_pred EeChhhHHHhHccCCeEEEEEE----CCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCcc----c
Q 013240 47 ELDESNFDSAISSFDYILVDFY----APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA----F 118 (447)
Q Consensus 47 ~l~~~~f~~~~~~~~~~lV~f~----~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~----~ 118 (447)
.+|.+|..... . .+.++.|| +..-..-..+.+.+.++|+.+++ +++.|+.+|.++.....+.+|++. .
T Consensus 3 ~~~~en~~~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~--gki~Fv~~D~~~~~~~l~~fgl~~~~~~~ 78 (111)
T cd03073 3 HRTKDNRAQFT-K-KPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPD--RKLNFAVADKEDFSHELEEFGLDFSGGEK 78 (111)
T ss_pred eeccchHHHhc-c-CCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcC--CeEEEEEEcHHHHHHHHHHcCCCcccCCC
Confidence 46677777774 2 34444443 22334456789999999998873 249999999998888899999985 9
Q ss_pred cEEEEEeCCeeEEe--cCCC-CHHHHHHHHHHh
Q 013240 119 PTLKIFMHGIPTEY--YGPR-KAELLVRYLKKF 148 (447)
Q Consensus 119 Ptl~~~~~g~~~~y--~g~~-~~~~i~~fi~~~ 148 (447)
|++.+..... ..| .+.. +.+.|.+|+++.
T Consensus 79 P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 79 PVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CEEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence 9999987543 445 6777 999999999875
No 189
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.46 E-value=0.00065 Score=47.64 Aligned_cols=55 Identities=27% Similarity=0.384 Sum_probs=41.3
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhh----hCCCccccEEEEEeCCee
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLAS----KQEIDAFPTLKIFMHGIP 129 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~----~~~i~~~Ptl~~~~~g~~ 129 (447)
++.|+.+||++|++....+++ .+ +.+-.+|.+.+++..+ ..|..++|++++ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-------~~--i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-------KG--IPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-------TT--BEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH-------cC--CeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 478899999999998877743 12 7788899987754433 349999999986 5543
No 190
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.46 E-value=0.0018 Score=50.50 Aligned_cols=90 Identities=13% Similarity=0.099 Sum_probs=64.8
Q ss_pred ChhhHHHhHcc--CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchh----hhhhCCCc-cccEE
Q 013240 49 DESNFDSAISS--FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR----LASKQEID-AFPTL 121 (447)
Q Consensus 49 ~~~~f~~~~~~--~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~----l~~~~~i~-~~Ptl 121 (447)
+.+++++++++ .+|++|.=+++.|+-+.+....|++......+ .+.++.++.-+++. ++.++||. .-|.+
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~---~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ 82 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD---EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQV 82 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGHHHHHHHHHHHT----SSEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc---cceEEEEEEEeCchhHHHHHHHhCCCcCCCcE
Confidence 45789999965 78999988999999999999999998876543 28889999988765 57789988 57999
Q ss_pred EEEeCCeeEE--ecCCCCHHHH
Q 013240 122 KIFMHGIPTE--YYGPRKAELL 141 (447)
Q Consensus 122 ~~~~~g~~~~--y~g~~~~~~i 141 (447)
+++++|+.+- =++..+.+.|
T Consensus 83 ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 83 ILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEETTEEEEEEEGGG-SHHHH
T ss_pred EEEECCEEEEECccccCCHHhc
Confidence 9999998874 3556666654
No 191
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.45 E-value=0.0011 Score=68.49 Aligned_cols=100 Identities=18% Similarity=0.224 Sum_probs=77.1
Q ss_pred CeEEeChhhHHHhHccC-CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEE
Q 013240 44 KVIELDESNFDSAISSF-DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (447)
Q Consensus 44 ~v~~l~~~~f~~~~~~~-~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~ 122 (447)
.-..|+++..+.+-+=+ +.-+-.|+++.|++|......+.+++.. ++.|.+-.||...+++++.+|+|.++|+++
T Consensus 99 ~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~----~~~i~~~~id~~~~~~~~~~~~v~~VP~~~ 174 (517)
T PRK15317 99 HPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVL----NPNITHTMIDGALFQDEVEARNIMAVPTVF 174 (517)
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh----CCCceEEEEEchhCHhHHHhcCCcccCEEE
Confidence 34455566555544333 4458889999999998888888877763 345999999999999999999999999997
Q ss_pred EEeCCeeEEecCCCCHHHHHHHHHHhcC
Q 013240 123 IFMHGIPTEYYGPRKAELLVRYLKKFVA 150 (447)
Q Consensus 123 ~~~~g~~~~y~g~~~~~~i~~fi~~~~~ 150 (447)
+ +|. ..+.|..+.+++.+.+.+..+
T Consensus 175 i--~~~-~~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 175 L--NGE-EFGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred E--CCc-EEEecCCCHHHHHHHHhcccc
Confidence 5 554 448899999988888876544
No 192
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.45 E-value=0.0016 Score=50.97 Aligned_cols=96 Identities=14% Similarity=0.184 Sum_probs=69.7
Q ss_pred ccccChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC--CceEEEEeccchHhHHhhcCCCCCCCCceEE
Q 013240 255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR--ELVFCYVGIKQFADFADTFEANKKSKLPKMV 332 (447)
Q Consensus 255 ~~~l~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~--~~~f~~vd~~~~~~~~~~~~i~~~~~~P~vv 332 (447)
+.+++.++|+.+... ..++.|+. .....-......+.+++..+. ++.|+.+|+.+.+.+++.+++ ..+|+++
T Consensus 3 v~~l~~~~f~~~~~~--~~lv~f~a-~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i---~~~Pt~~ 76 (101)
T cd02994 3 VVELTDSNWTLVLEG--EWMIEFYA-PWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFV---TALPTIY 76 (101)
T ss_pred eEEcChhhHHHHhCC--CEEEEEEC-CCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCC---cccCEEE
Confidence 557888899887643 34555654 355555677778888888765 389999999999999999998 8899998
Q ss_pred EEeCCccceecCCCCCCCcccchhHHHHHHH
Q 013240 333 VWDGNENYLTVIGSESIDEEDQGSQISRFLE 363 (447)
Q Consensus 333 i~~~~~~y~~~~g~~~~~~~~~~~~i~~Fl~ 363 (447)
++..+ ....+.| ..+.+.|.+|++
T Consensus 77 ~~~~g-~~~~~~G------~~~~~~l~~~i~ 100 (101)
T cd02994 77 HAKDG-VFRRYQG------PRDKEDLISFIE 100 (101)
T ss_pred EeCCC-CEEEecC------CCCHHHHHHHHh
Confidence 87544 3333433 445678888875
No 193
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.44 E-value=0.00051 Score=61.22 Aligned_cols=83 Identities=20% Similarity=0.227 Sum_probs=55.0
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHH--------------------------------hh----cCCC--CeEEEEE
Q 013240 60 FDYILVDFYAPWCGHCKRLAPQLDEAAPI--------------------------------LA----KLKE--PIVIAKV 101 (447)
Q Consensus 60 ~~~~lV~f~~~~C~~C~~~~p~~~~~a~~--------------------------------l~----~~~~--~v~~~~V 101 (447)
.++.++.|+.+.|++|+++++.+.+.... ++ +... .......
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~~~ 156 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASCDN 156 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccccCc
Confidence 47899999999999999999888751000 00 0000 0111112
Q ss_pred eCccchhhhhhCCCccccEEEEEeCCeeEEecCCCCHHHHHHHH
Q 013240 102 DADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYL 145 (447)
Q Consensus 102 d~~~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~i~~fi 145 (447)
+.+++..+++++||+++|+++ +.+|.. ..|....+.|.+|+
T Consensus 157 ~i~~~~~l~~~~gi~gtPtii-~~~G~~--~~G~~~~~~l~~~L 197 (197)
T cd03020 157 PVAANLALGRQLGVNGTPTIV-LADGRV--VPGAPPAAQLEALL 197 (197)
T ss_pred hHHHHHHHHHHcCCCcccEEE-ECCCeE--ecCCCCHHHHHhhC
Confidence 223446789999999999997 777865 46877888877663
No 194
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.43 E-value=0.00074 Score=56.56 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=39.1
Q ss_pred cCCeEEEEEECCCChh-hhhhhHHHHHHHHHhhcCC-CCeEEEEEeCcc
Q 013240 59 SFDYILVDFYAPWCGH-CKRLAPQLDEAAPILAKLK-EPIVIAKVDADK 105 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~~-C~~~~p~~~~~a~~l~~~~-~~v~~~~Vd~~~ 105 (447)
..++++|.||++||+. |....+.+.++.+.+...+ .++.+..|+++.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 4689999999999997 9999999999999987643 357888887653
No 195
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.43 E-value=0.0031 Score=53.23 Aligned_cols=44 Identities=9% Similarity=0.233 Sum_probs=34.8
Q ss_pred cCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCc
Q 013240 59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104 (447)
Q Consensus 59 ~~~~~lV~f~-~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~ 104 (447)
..++++|.|| ++||+.|....|.+.++.+.+.+.+ +.+..|+.+
T Consensus 27 g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--v~vi~vs~d 71 (149)
T cd03018 27 GRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG--AEVLGISVD 71 (149)
T ss_pred CCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC--CEEEEecCC
Confidence 3478888887 8999999999999999999887533 666666643
No 196
>PTZ00051 thioredoxin; Provisional
Probab=97.42 E-value=0.0016 Score=50.60 Aligned_cols=85 Identities=12% Similarity=0.252 Sum_probs=65.4
Q ss_pred ccChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCceEEEEeccchHhHHhhcCCCCCCCCceEEEEeC
Q 013240 257 PINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 336 (447)
Q Consensus 257 ~l~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~ 336 (447)
..+++.+..+...++++++.|+. .....-..+...+..+++.+.++.|+.+|+.+...+++.+++ ...|++++++.
T Consensus 5 i~~~~~~~~~~~~~~~vli~f~~-~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~~~~~~ 80 (98)
T PTZ00051 5 VTSQAEFESTLSQNELVIVDFYA-EWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENI---TSMPTFKVFKN 80 (98)
T ss_pred ecCHHHHHHHHhcCCeEEEEEEC-CCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCC---ceeeEEEEEeC
Confidence 34566777777777777777765 455566777788999999988899999999998999999999 78999999976
Q ss_pred CccceecCC
Q 013240 337 NENYLTVIG 345 (447)
Q Consensus 337 ~~~y~~~~g 345 (447)
++....+.|
T Consensus 81 g~~~~~~~G 89 (98)
T PTZ00051 81 GSVVDTLLG 89 (98)
T ss_pred CeEEEEEeC
Confidence 544434443
No 197
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0013 Score=54.26 Aligned_cols=105 Identities=12% Similarity=0.194 Sum_probs=80.2
Q ss_pred CCccccChhhHHh-hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHhHHhhcCCCCCCCCce
Q 013240 253 PLSVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPK 330 (447)
Q Consensus 253 p~~~~l~~~~~~~-~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~~i~~~~~~P~ 330 (447)
..+...+...++. +.....|+++-|+. .-...-+.+...|.+++.++.+ +.|+.+|.+++.+++..|+| ...|+
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A-~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I---~avPt 118 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHA-EWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEI---SAVPT 118 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEec-CcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcce---eeeeE
Confidence 4555666777765 66778899988875 3444456777889999999887 99999999999999999999 78999
Q ss_pred EEEEeCCccceecCCCCCCCcccchhHHHHHHHHHhc
Q 013240 331 MVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 367 (447)
Q Consensus 331 vvi~~~~~~y~~~~g~~~~~~~~~~~~i~~Fl~~~~~ 367 (447)
++++..+...-.+. +-...+.+.+||++++.
T Consensus 119 vlvfknGe~~d~~v------G~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 119 VLVFKNGEKVDRFV------GAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEEECCEEeeeec------ccCCHHHHHHHHHHHhc
Confidence 99999864432332 33446688899888763
No 198
>PRK15000 peroxidase; Provisional
Probab=97.38 E-value=0.0017 Score=57.92 Aligned_cols=88 Identities=14% Similarity=0.166 Sum_probs=64.7
Q ss_pred cCCeEEEEEEC-CCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc----------------------------chhh
Q 013240 59 SFDYILVDFYA-PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----------------------------YSRL 109 (447)
Q Consensus 59 ~~~~~lV~f~~-~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~----------------------------~~~l 109 (447)
+.+++++.||+ .||+.|....+.+.+.+++++..+ +.+..|+++. ..++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g--~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~i 110 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG--VEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREI 110 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHH
Confidence 35799999998 599999999999999999997654 5566666542 2356
Q ss_pred hhhCCCc------cccEEEEEe-CCeeEE-ecC----CCCHHHHHHHHHHh
Q 013240 110 ASKQEID------AFPTLKIFM-HGIPTE-YYG----PRKAELLVRYLKKF 148 (447)
Q Consensus 110 ~~~~~i~------~~Ptl~~~~-~g~~~~-y~g----~~~~~~i~~fi~~~ 148 (447)
++.||+. ..|+.+++. +|+... +.| .|+.+++.+.++.+
T Consensus 111 a~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 111 QKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 6678887 689999987 465543 333 47788888777543
No 199
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.35 E-value=0.0016 Score=56.41 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=34.5
Q ss_pred cCCeEEEEEECCC-ChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCc
Q 013240 59 SFDYILVDFYAPW-CGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104 (447)
Q Consensus 59 ~~~~~lV~f~~~~-C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~ 104 (447)
..++++|.||+.| |+.|....|.+.++++.+. .+.+..|+++
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~----~~~vv~vs~D 85 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD----NTVVLCISAD 85 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC----CcEEEEEeCC
Confidence 3579999999999 9999999999999988763 2666666664
No 200
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.35 E-value=0.0018 Score=52.92 Aligned_cols=109 Identities=10% Similarity=0.084 Sum_probs=78.6
Q ss_pred hhCCCCccccChhhHHhhhcCCCcEEEEEEeCC-ChhhHHHHHHHHHHHHHhCC-C-ceEEEEeccchHhHHhhcCCCCC
Q 013240 249 QNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANR-E-LVFCYVGIKQFADFADTFEANKK 325 (447)
Q Consensus 249 ~~~~p~~~~l~~~~~~~~~~~~~~~vl~~~~~~-~~~~~~~~~~~l~~~a~~~~-~-~~f~~vd~~~~~~~~~~~~i~~~ 325 (447)
...+|.+ +..+++.+.......|+++-.|. ...+.....=+|.++++++. . +.|+.||.++.+.++..||+
T Consensus 16 ~~g~~~~---~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV--- 89 (132)
T PRK11509 16 ARGWTPV---SESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGV--- 89 (132)
T ss_pred HcCCCcc---ccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCC---
Confidence 3444444 45677777766666666555332 22344566678999999997 3 89999999999999999999
Q ss_pred CCCceEEEEeCCccceecCCCCCCCcccchhHHHHHHHHHhcCc
Q 013240 326 SKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGR 369 (447)
Q Consensus 326 ~~~P~vvi~~~~~~y~~~~g~~~~~~~~~~~~i~~Fl~~~~~gk 369 (447)
...|++++++.++.-.... +..+.+.+.+||+.++...
T Consensus 90 ~siPTLl~FkdGk~v~~i~------G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 90 FRFPATLVFTGGNYRGVLN------GIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred ccCCEEEEEECCEEEEEEe------CcCCHHHHHHHHHHHhcCc
Confidence 7899999999875443333 3345678999999887653
No 201
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.34 E-value=0.0015 Score=51.20 Aligned_cols=92 Identities=17% Similarity=0.105 Sum_probs=64.0
Q ss_pred CCeEEeChhhHHHhHccCCeEEEEEECCCCh---hhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCcccc
Q 013240 43 GKVIELDESNFDSAISSFDYILVDFYAPWCG---HCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP 119 (447)
Q Consensus 43 ~~v~~l~~~~f~~~~~~~~~~lV~f~~~~C~---~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~P 119 (447)
.....++.++++..+..+...++.|.. .|. .|....=.+-++.+.+ +..+..+.|.-..+..|..+||+..+|
T Consensus 9 ~g~~~vd~~~ld~~l~~~~~~vlf~~g-Dp~r~~E~~DvaVILPEL~~af---~~~~~~avv~~~~e~~L~~r~gv~~~P 84 (107)
T PF07449_consen 9 HGWPRVDADTLDAFLAAPGDAVLFFAG-DPARFPETADVAVILPELVKAF---PGRFRGAVVARAAERALAARFGVRRWP 84 (107)
T ss_dssp -TEEEE-CCCHHHHHHCCSCEEEEESS--TTTSTTCCHHHHHHHHHHCTS---TTSEEEEEEEHHHHHHHHHHHT-TSSS
T ss_pred cCCeeechhhHHHHHhCCCcEEEEECC-CCCcCcccccceeEcHHHHHhh---hCccceEEECchhHHHHHHHhCCccCC
Confidence 467888999999999887776655543 333 3444333444444444 344778888888899999999999999
Q ss_pred EEEEEeCCeeEE-ecCCCCH
Q 013240 120 TLKIFMHGIPTE-YYGPRKA 138 (447)
Q Consensus 120 tl~~~~~g~~~~-y~g~~~~ 138 (447)
+++++++|.... -.|.++-
T Consensus 85 aLvf~R~g~~lG~i~gi~dW 104 (107)
T PF07449_consen 85 ALVFFRDGRYLGAIEGIRDW 104 (107)
T ss_dssp EEEEEETTEEEEEEESSSTH
T ss_pred eEEEEECCEEEEEecCeecc
Confidence 999999998876 4565554
No 202
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.33 E-value=0.0018 Score=51.81 Aligned_cols=96 Identities=10% Similarity=0.031 Sum_probs=68.0
Q ss_pred ChhhHHh-hh--cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC--CceEEEEeccchHhHHhhcCCCCCCCCceEEE
Q 013240 259 NQDTLNL-LK--DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR--ELVFCYVGIKQFADFADTFEANKKSKLPKMVV 333 (447)
Q Consensus 259 ~~~~~~~-~~--~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~--~~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi 333 (447)
+..++.. +. ..++++++.|+.+ ....-......+.+++++++ ++.|+.||+...+.+++.+++ ...|++++
T Consensus 10 ~~~~~~~~~~~~~~~~~vlV~F~a~-wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V---~~~Pt~~i 85 (111)
T cd02963 10 TFSQYENEIVPKSFKKPYLIKITSD-WCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGA---HSVPAIVG 85 (111)
T ss_pred eHHHHHHhhccccCCCeEEEEEECC-ccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCC---ccCCEEEE
Confidence 4444543 33 2457788777753 45555666777888888876 388999999988999999999 78999999
Q ss_pred EeCCccceecCCCCCCCcccchhHHHHHHHH
Q 013240 334 WDGNENYLTVIGSESIDEEDQGSQISRFLEG 364 (447)
Q Consensus 334 ~~~~~~y~~~~g~~~~~~~~~~~~i~~Fl~~ 364 (447)
++.++...... +..+.+.+.+|+++
T Consensus 86 ~~~g~~~~~~~------G~~~~~~l~~~i~~ 110 (111)
T cd02963 86 IINGQVTFYHD------SSFTKQHVVDFVRK 110 (111)
T ss_pred EECCEEEEEec------CCCCHHHHHHHHhc
Confidence 98554333333 34456788898865
No 203
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.29 E-value=0.0019 Score=50.64 Aligned_cols=83 Identities=7% Similarity=0.085 Sum_probs=63.5
Q ss_pred CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCceEEEEecc-chHhHHhhcCCCCCCCCceEEEEeCCccceecCCCC
Q 013240 269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIK-QFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSE 347 (447)
Q Consensus 269 ~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~-~~~~~~~~~~i~~~~~~P~vvi~~~~~~y~~~~g~~ 347 (447)
.++++++.|+. .....-+.....+.++++.++++.|+.+|.. +++.+++.+++ ..+|++++++.+ ....+.|
T Consensus 17 ~g~~vlV~F~a-~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V---~~~PT~~lf~~g-~~~~~~G-- 89 (100)
T cd02999 17 REDYTAVLFYA-SWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGV---VGFPTILLFNST-PRVRYNG-- 89 (100)
T ss_pred CCCEEEEEEEC-CCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCC---eecCEEEEEcCC-ceeEecC--
Confidence 45677777764 3555667778899999999988889999998 78999999999 789999999876 3333443
Q ss_pred CCCcccchhHHHHHH
Q 013240 348 SIDEEDQGSQISRFL 362 (447)
Q Consensus 348 ~~~~~~~~~~i~~Fl 362 (447)
..+.+.|.+|+
T Consensus 90 ----~~~~~~l~~f~ 100 (100)
T cd02999 90 ----TRTLDSLAAFY 100 (100)
T ss_pred ----CCCHHHHHhhC
Confidence 34566788774
No 204
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.27 E-value=0.0029 Score=48.94 Aligned_cols=84 Identities=15% Similarity=0.247 Sum_probs=62.6
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHhHHhhcCCCCCCCCceEEEEeCCccceecCCCCC
Q 013240 270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSES 348 (447)
Q Consensus 270 ~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~~~~y~~~~g~~~ 348 (447)
++++++.|+. .....-......+.+++..+.+ +.|+.+|++..+.+++.+++ ...|++++++.++....+.
T Consensus 12 ~~~vlv~f~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i---~~~Pt~~~~~~g~~~~~~~---- 83 (96)
T cd02956 12 QVPVVVDFWA-PRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGV---QALPTVYLFAAGQPVDGFQ---- 83 (96)
T ss_pred CCeEEEEEEC-CCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCC---CCCCEEEEEeCCEEeeeec----
Confidence 4677777765 3555556777888899988876 88999999999999999999 7899999998543322233
Q ss_pred CCcccchhHHHHHHH
Q 013240 349 IDEEDQGSQISRFLE 363 (447)
Q Consensus 349 ~~~~~~~~~i~~Fl~ 363 (447)
+..+.+.|.+|++
T Consensus 84 --g~~~~~~l~~~l~ 96 (96)
T cd02956 84 --GAQPEEQLRQMLD 96 (96)
T ss_pred --CCCCHHHHHHHhC
Confidence 3345668888763
No 205
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.27 E-value=0.0013 Score=55.19 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=36.0
Q ss_pred cCCeEEEEEECCC-ChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc
Q 013240 59 SFDYILVDFYAPW-CGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK 105 (447)
Q Consensus 59 ~~~~~lV~f~~~~-C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~ 105 (447)
.+++++|.||+.| |++|....|.+.++.+++. .+.+..|+.+.
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~----~~~vi~Is~d~ 68 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD----NTVVLTISADL 68 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC----CCEEEEEECCC
Confidence 3579999999998 6999999999999998863 27788888764
No 206
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.26 E-value=0.0017 Score=49.35 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=49.5
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccch----hhhhhCC--CccccEEEEEeCCeeEEecCCCC
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS----RLASKQE--IDAFPTLKIFMHGIPTEYYGPRK 137 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~----~l~~~~~--i~~~Ptl~~~~~g~~~~y~g~~~ 137 (447)
++.|+.+||++|.++...++++..... .+.+..+|.+.+. ++....+ ..++|+++ .+|+.+ | .
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~----~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~i---g--G 70 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA----DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKHV---G--G 70 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC----CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEEe---c--C
Confidence 577889999999999888887653321 2667777876432 4555555 37899995 355432 2 2
Q ss_pred HHHHHHHHHHh
Q 013240 138 AELLVRYLKKF 148 (447)
Q Consensus 138 ~~~i~~fi~~~ 148 (447)
.++|.+++++.
T Consensus 71 ~~dl~~~~~~~ 81 (86)
T TIGR02183 71 CTDFEQLVKEN 81 (86)
T ss_pred HHHHHHHHHhc
Confidence 46677776654
No 207
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.25 E-value=0.0027 Score=50.20 Aligned_cols=78 Identities=22% Similarity=0.335 Sum_probs=68.6
Q ss_pred hhHHHhH--ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCCe
Q 013240 51 SNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGI 128 (447)
Q Consensus 51 ~~f~~~~--~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g~ 128 (447)
...++++ ...+.++|-|-..|-+.|.+....+.++++.+.+. ..++-||.++-+++.+-|++...|++++|-+++
T Consensus 12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~IylvdideV~~~~~~~~l~~p~tvmfFfn~k 88 (142)
T KOG3414|consen 12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNK 88 (142)
T ss_pred HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecchhhhhhhhhcccCCceEEEEEcCc
Confidence 4456666 45689999999999999999999999999999876 888999999999999999999999999998876
Q ss_pred eEE
Q 013240 129 PTE 131 (447)
Q Consensus 129 ~~~ 131 (447)
.+.
T Consensus 89 Hmk 91 (142)
T KOG3414|consen 89 HMK 91 (142)
T ss_pred eEE
Confidence 554
No 208
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.25 E-value=0.0019 Score=57.74 Aligned_cols=88 Identities=16% Similarity=0.149 Sum_probs=62.7
Q ss_pred CCeEEE-EEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCc---------------------------cchhhhh
Q 013240 60 FDYILV-DFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD---------------------------KYSRLAS 111 (447)
Q Consensus 60 ~~~~lV-~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~---------------------------~~~~l~~ 111 (447)
.+++++ .|++.||+.|....+.+.+..+++++.+ +.+..|+++ .+.++++
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~--~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~ 104 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG--VELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAR 104 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHH
Confidence 455444 5789999999999999999998887543 445555443 2346777
Q ss_pred hCCCc------cccEEEEEeC-CeeEE---e--cCCCCHHHHHHHHHHhc
Q 013240 112 KQEID------AFPTLKIFMH-GIPTE---Y--YGPRKAELLVRYLKKFV 149 (447)
Q Consensus 112 ~~~i~------~~Ptl~~~~~-g~~~~---y--~g~~~~~~i~~fi~~~~ 149 (447)
.||+. .+|+.+++.+ |+... | .+.|+.+++.+.++.+.
T Consensus 105 ~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 105 EYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred HcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 88874 5899999975 54432 2 45689999988887653
No 209
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.21 E-value=0.0047 Score=49.17 Aligned_cols=99 Identities=9% Similarity=0.163 Sum_probs=69.5
Q ss_pred ccccChhhHHhhhc---CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--ceEEEEeccc-hHhHHh-hcCCCCCCC
Q 013240 255 SVPINQDTLNLLKD---DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQ-FADFAD-TFEANKKSK 327 (447)
Q Consensus 255 ~~~l~~~~~~~~~~---~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~-~~~~~~-~~~i~~~~~ 327 (447)
+.++++.+++.+.. .++++++.|+. .....-+++...+.++++.+++ +.|+.||++. ...++. .+++ ..
T Consensus 3 v~~~~~~~~~~~~~~~~~~k~vlv~f~a-~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v---~~ 78 (109)
T cd02993 3 VVTLSRAEIEALAKGERRNQSTLVVLYA-PWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQL---KS 78 (109)
T ss_pred ceeccHHHHHHHHhhhhcCCCEEEEEEC-CCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCC---Cc
Confidence 56788888888753 45677777764 4556667777888889888864 8899999986 567776 4888 78
Q ss_pred CceEEEEeCCc-cceecCCCCCCCcccchhHHHHHH
Q 013240 328 LPKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFL 362 (447)
Q Consensus 328 ~P~vvi~~~~~-~y~~~~g~~~~~~~~~~~~i~~Fl 362 (447)
+|++++++.++ .-..+.|. +-+.++|..|+
T Consensus 79 ~Pti~~f~~~~~~~~~y~g~-----~~~~~~l~~f~ 109 (109)
T cd02993 79 FPTILFFPKNSRQPIKYPSE-----QRDVDSLLMFV 109 (109)
T ss_pred CCEEEEEcCCCCCceeccCC-----CCCHHHHHhhC
Confidence 99999998753 22233331 23566777774
No 210
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.20 E-value=0.0037 Score=47.35 Aligned_cols=90 Identities=14% Similarity=0.319 Sum_probs=63.5
Q ss_pred HHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCceEEEEeccchHhHHhhcCCCCCCCCceEEEEeCCcccee
Q 013240 263 LNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLT 342 (447)
Q Consensus 263 ~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~~~~y~~ 342 (447)
+......+++.++.|+.. ....-....+.++++++..+++.|+.+|+....++++.+++ ...|++++++.++....
T Consensus 3 ~~~~~~~~~~~ll~~~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v---~~~P~~~~~~~g~~~~~ 78 (93)
T cd02947 3 FEELIKSAKPVVVDFWAP-WCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGV---RSIPTFLFFKNGKEVDR 78 (93)
T ss_pred hHHHHhcCCcEEEEEECC-CChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCc---ccccEEEEEECCEEEEE
Confidence 333333446666666653 45556777788888888866799999999988999999999 67999999987653333
Q ss_pred cCCCCCCCcccchhHHHHHH
Q 013240 343 VIGSESIDEEDQGSQISRFL 362 (447)
Q Consensus 343 ~~g~~~~~~~~~~~~i~~Fl 362 (447)
+.| ..+.+.|.+|+
T Consensus 79 ~~g------~~~~~~l~~~i 92 (93)
T cd02947 79 VVG------ADPKEELEEFL 92 (93)
T ss_pred Eec------CCCHHHHHHHh
Confidence 332 22346777776
No 211
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.15 E-value=0.00098 Score=58.29 Aligned_cols=80 Identities=18% Similarity=0.201 Sum_probs=53.8
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc-----------chhhhh-hCCCccccEEEEEeCC
Q 013240 60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-----------YSRLAS-KQEIDAFPTLKIFMHG 127 (447)
Q Consensus 60 ~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~-----------~~~l~~-~~~i~~~Ptl~~~~~g 127 (447)
.+++||.|+|.||+.|+. .|.+.++.+.+...+ +.+..+.|.. -.++|+ ++++. +|-+--.
T Consensus 25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~g--l~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-Fpv~~k~--- 97 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQG--FVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-FPMFSKI--- 97 (183)
T ss_pred CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCC--eEEEEeeccccccCCCCCHHHHHHHHHHccCCC-ceeEEEE---
Confidence 589999999999999975 789999999887543 8889999842 134565 56663 5543211
Q ss_pred eeEEecCCCCHHHHHHHHHHhcC
Q 013240 128 IPTEYYGPRKAELLVRYLKKFVA 150 (447)
Q Consensus 128 ~~~~y~g~~~~~~i~~fi~~~~~ 150 (447)
+-.|. .+..+.+|++...+
T Consensus 98 ---dvnG~-~~~pl~~~Lk~~~~ 116 (183)
T PRK10606 98 ---EVNGE-GRHPLYQKLIAAAP 116 (183)
T ss_pred ---ccCCC-CCCHHHHHHHHhCC
Confidence 11222 34456777776554
No 212
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.15 E-value=0.016 Score=46.29 Aligned_cols=81 Identities=15% Similarity=0.217 Sum_probs=61.0
Q ss_pred hhHHhhhc--CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHhHHhhcCCCCCCCCceEEEEeCC
Q 013240 261 DTLNLLKD--DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 337 (447)
Q Consensus 261 ~~~~~~~~--~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~~ 337 (447)
+.++.... .++++++-|+. .-...-+.+...|.++|.++++ +.|+.||.++.+++++.+++ ...|+++++..+
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A-~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V---~~iPTf~~fk~G 78 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGR-DWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYEL---YDPPTVMFFFRN 78 (114)
T ss_pred HHHHHHHhccCCCEEEEEEEC-CCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCC---CCCCEEEEEECC
Confidence 34444332 34566666664 4566667788899999999988 78999999999999999999 779999999976
Q ss_pred ccceecCC
Q 013240 338 ENYLTVIG 345 (447)
Q Consensus 338 ~~y~~~~g 345 (447)
+......|
T Consensus 79 ~~v~~~~G 86 (114)
T cd02954 79 KHMKIDLG 86 (114)
T ss_pred EEEEEEcC
Confidence 54444444
No 213
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.15 E-value=0.0059 Score=53.10 Aligned_cols=108 Identities=18% Similarity=0.278 Sum_probs=74.4
Q ss_pred CCCccccCh-hhHHhhhcC-C--CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCceEEEEeccchHhHHhhcCCCCCCC
Q 013240 252 LPLSVPINQ-DTLNLLKDD-K--RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSK 327 (447)
Q Consensus 252 ~p~~~~l~~-~~~~~~~~~-~--~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~~i~~~~~ 327 (447)
+..+.+++. ..|...... + .++|+.|+.+ ....-+.+...|..+|.+++++.|+.||++.. ..+..|++ ..
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~-wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v---~~ 135 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEP-GIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDT---DA 135 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECC-CCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCC---CC
Confidence 344445555 555544322 2 3677777653 55555677788999999999999999999875 78888988 78
Q ss_pred CceEEEEeCCccceecCCCCC-CCcccchhHHHHHHHH
Q 013240 328 LPKMVVWDGNENYLTVIGSES-IDEEDQGSQISRFLEG 364 (447)
Q Consensus 328 ~P~vvi~~~~~~y~~~~g~~~-~~~~~~~~~i~~Fl~~ 364 (447)
.|+++++...+....+.|... +.+.++.+.|..||..
T Consensus 136 vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 136 LPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred CCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 999999987654433434322 2346778888888865
No 214
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.14 E-value=0.0029 Score=52.70 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=36.7
Q ss_pred cCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc
Q 013240 59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK 105 (447)
Q Consensus 59 ~~~~~lV~f~-~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~ 105 (447)
.+++++|.|| +.||+.|....|.+.++.+.++.. .+.+..|..+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG--GAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCCC
Confidence 5689999999 789999999999999999988543 36677777643
No 215
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.14 E-value=0.0075 Score=50.56 Aligned_cols=102 Identities=9% Similarity=0.156 Sum_probs=72.8
Q ss_pred hhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEecc--chHhHHhhcCCCCCCCCceEEEEeCC
Q 013240 261 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIK--QFADFADTFEANKKSKLPKMVVWDGN 337 (447)
Q Consensus 261 ~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~--~~~~~~~~~~i~~~~~~P~vvi~~~~ 337 (447)
..++.....+++++|.|+. .....-......+.+++..+.+ +.|+.++.+ .+..+++.|++ ...|++++++.+
T Consensus 11 ~~~~~a~~~gk~vvV~F~A-~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V---~~iPt~v~~~~~ 86 (142)
T cd02950 11 TPPEVALSNGKPTLVEFYA-DWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRV---DGIPHFVFLDRE 86 (142)
T ss_pred CCHHHHHhCCCEEEEEEEC-CcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCC---CCCCEEEEECCC
Confidence 3455555667788887775 3555666777888888888865 778777765 34678899999 789999999865
Q ss_pred c-cceecCCCCCCCcccchhHHHHHHHHHhcCcccc
Q 013240 338 E-NYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQ 372 (447)
Q Consensus 338 ~-~y~~~~g~~~~~~~~~~~~i~~Fl~~~~~gkl~~ 372 (447)
+ ...... +..+.+.+.++++.++.|.-.|
T Consensus 87 G~~v~~~~------G~~~~~~l~~~l~~l~~~~~~~ 116 (142)
T cd02950 87 GNEEGQSI------GLQPKQVLAQNLDALVAGEPLP 116 (142)
T ss_pred CCEEEEEe------CCCCHHHHHHHHHHHHcCCCCC
Confidence 4 222333 3345678999999999887333
No 216
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.13 E-value=0.01 Score=54.77 Aligned_cols=87 Identities=14% Similarity=0.146 Sum_probs=63.2
Q ss_pred CCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc----------------------------chhhh
Q 013240 60 FDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----------------------------YSRLA 110 (447)
Q Consensus 60 ~~~~lV~f~-~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~----------------------------~~~l~ 110 (447)
.+++++.|| +.||+.|....|.+.+..+++++.+ +.+..|.++. +.++|
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ia 175 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVS 175 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHH
Confidence 467888888 8999999999999999999987654 4445555432 24678
Q ss_pred hhCCCc-----cccEEEEEe-CCeeEE---e--cCCCCHHHHHHHHHHh
Q 013240 111 SKQEID-----AFPTLKIFM-HGIPTE---Y--YGPRKAELLVRYLKKF 148 (447)
Q Consensus 111 ~~~~i~-----~~Ptl~~~~-~g~~~~---y--~g~~~~~~i~~fi~~~ 148 (447)
+.||+. ..|+.+++. +|+... | ...++.+++.+-+..+
T Consensus 176 kayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 176 KSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 888985 479999997 576543 2 3457888887776543
No 217
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.13 E-value=0.0081 Score=47.16 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=69.9
Q ss_pred cChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--ceEEEEeccchHhHHhhcCCCCCCCCceEEEEe
Q 013240 258 INQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMVVWD 335 (447)
Q Consensus 258 l~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~ 335 (447)
.|.+.++.+...++++++.|+. .....-......|..++.++.+ +.|+.+|.+ .++.++.+++ ...|++++++
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a-~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v---~~~Pt~~~~~ 79 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQ-EWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRG---KCEPTFLFYK 79 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEEC-CcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCC---CcCcEEEEEE
Confidence 4667788777777787777765 4556666777888999888864 789999998 6788999998 7889999998
Q ss_pred CCccceecCCCCCCCcccchhHHHHHHHH
Q 013240 336 GNENYLTVIGSESIDEEDQGSQISRFLEG 364 (447)
Q Consensus 336 ~~~~y~~~~g~~~~~~~~~~~~i~~Fl~~ 364 (447)
.++......| .+.+.+.++|+.
T Consensus 80 ~g~~~~~~~G-------~~~~~~~~~i~~ 101 (102)
T cd02948 80 NGELVAVIRG-------ANAPLLNKTITE 101 (102)
T ss_pred CCEEEEEEec-------CChHHHHHHHhh
Confidence 6544433433 235677777764
No 218
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0007 Score=59.43 Aligned_cols=78 Identities=17% Similarity=0.346 Sum_probs=67.0
Q ss_pred hHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCCeeEE-ecC
Q 013240 56 AISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTE-YYG 134 (447)
Q Consensus 56 ~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g~~~~-y~g 134 (447)
..+..+..++.||++||..|+.+...+..+++.... +.+.+.+.+..+++|..+.+...|.+.++..|..+. ..|
T Consensus 13 ~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~----~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~ 88 (227)
T KOG0911|consen 13 LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKN----AQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSG 88 (227)
T ss_pred HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhh----heeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhc
Confidence 445778999999999999999999999999988733 889999999999999999999999999998886554 444
Q ss_pred CCC
Q 013240 135 PRK 137 (447)
Q Consensus 135 ~~~ 137 (447)
...
T Consensus 89 ~~~ 91 (227)
T KOG0911|consen 89 ADP 91 (227)
T ss_pred cCc
Confidence 433
No 219
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0047 Score=56.90 Aligned_cols=105 Identities=13% Similarity=0.197 Sum_probs=80.6
Q ss_pred CccccChhhHHh--hhcC-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHhHHhhcCCCCCCCCc
Q 013240 254 LSVPINQDTLNL--LKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLP 329 (447)
Q Consensus 254 ~~~~l~~~~~~~--~~~~-~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~~i~~~~~~P 329 (447)
.+.++|..||+. +..+ ..|+++.|... -.....++...|.+++.+|++ +.++.|||+..+.++..||+ ...|
T Consensus 24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap-~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgi---qsIP 99 (304)
T COG3118 24 GIKDVTEANFEQEVIQSSREVPVLVDFWAP-WCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGV---QSIP 99 (304)
T ss_pred cceechHhHHHHHHHHHccCCCeEEEecCC-CCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCc---CcCC
Confidence 377888888865 2233 34888888764 455668889999999999998 99999999999999999999 7899
Q ss_pred eEEEEeCCccceecCCCCCCCcccchhHHHHHHHHHhcC
Q 013240 330 KMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREG 368 (447)
Q Consensus 330 ~vvi~~~~~~y~~~~g~~~~~~~~~~~~i~~Fl~~~~~g 368 (447)
+++.+.-.+ +++|.. +..-.+.|.+|++.+..-
T Consensus 100 tV~af~dGq---pVdgF~---G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 100 TVYAFKDGQ---PVDGFQ---GAQPESQLRQFLDKVLPA 132 (304)
T ss_pred eEEEeeCCc---CccccC---CCCcHHHHHHHHHHhcCh
Confidence 998887653 333322 223355899999998776
No 220
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.07 E-value=0.0066 Score=46.14 Aligned_cols=98 Identities=12% Similarity=0.223 Sum_probs=68.8
Q ss_pred ChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccc--hHhHHhhcCCCCCCCCceEEEEe
Q 013240 259 NQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ--FADFADTFEANKKSKLPKMVVWD 335 (447)
Q Consensus 259 ~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~--~~~~~~~~~i~~~~~~P~vvi~~ 335 (447)
+...|..+...+..++++|. .+.......++.++++|++-++ =+.+||||.+ -.++|+.+.+ ++...|.=..+.
T Consensus 8 d~KdfKKLLRTr~NVLvLy~--ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv-~~~~kp~~~~Lk 84 (112)
T cd03067 8 DHKDFKKLLRTRNNVLVLYS--KSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKV-DPSSKPKPVELK 84 (112)
T ss_pred chHHHHHHHhhcCcEEEEEe--cchhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHcc-CCCCCCCcchhh
Confidence 35778888888888888887 4555667778999999999988 7789999987 5789999988 444455433333
Q ss_pred C--CccceecCCCCCCCcccchhHHHHHHHH
Q 013240 336 G--NENYLTVIGSESIDEEDQGSQISRFLEG 364 (447)
Q Consensus 336 ~--~~~y~~~~g~~~~~~~~~~~~i~~Fl~~ 364 (447)
. ++.|.. +.+-..+..++..|+.|
T Consensus 85 HYKdG~fHk-----dYdR~~t~kSmv~FlrD 110 (112)
T cd03067 85 HYKDGDFHT-----EYNRQLTFKSMVAFLRD 110 (112)
T ss_pred cccCCCccc-----cccchhhHHHHHHHhhC
Confidence 3 233322 12344567788888764
No 221
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.04 E-value=0.01 Score=47.77 Aligned_cols=79 Identities=20% Similarity=0.232 Sum_probs=65.5
Q ss_pred hhhHHHhH--ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCC
Q 013240 50 ESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127 (447)
Q Consensus 50 ~~~f~~~~--~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g 127 (447)
.-..++++ ++.+.++|-|-.+|-+.|.+....+.++++.+++. ..++.||.++-+++.+-|.+..--|+++|-++
T Consensus 8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~Vpdfn~~yel~dP~tvmFF~rn 84 (133)
T PF02966_consen 8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDEVPDFNQMYELYDPCTVMFFFRN 84 (133)
T ss_dssp HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTTHCCHHHTTS-SSEEEEEEETT
T ss_pred cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcccchhhhcccccCCCeEEEEEecC
Confidence 35567777 67789999999999999999999999999999876 89999999999999999999955567777677
Q ss_pred eeEE
Q 013240 128 IPTE 131 (447)
Q Consensus 128 ~~~~ 131 (447)
+.+.
T Consensus 85 khm~ 88 (133)
T PF02966_consen 85 KHMM 88 (133)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 7654
No 222
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.04 E-value=0.0036 Score=52.95 Aligned_cols=30 Identities=37% Similarity=0.656 Sum_probs=26.1
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHh
Q 013240 60 FDYILVDFYAPWCGHCKRLAPQLDEAAPIL 89 (447)
Q Consensus 60 ~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l 89 (447)
.++.++.|+.++|+||+.+.|.+.++....
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 478899999999999999999999876543
No 223
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.04 E-value=0.0067 Score=48.66 Aligned_cols=89 Identities=9% Similarity=0.106 Sum_probs=63.4
Q ss_pred CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCceEEEEeccchHhHHhhcCCCCCCCCceEEEEeCCccce--ecCCC
Q 013240 269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYL--TVIGS 346 (447)
Q Consensus 269 ~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~~~~y~--~~~g~ 346 (447)
.+.++++.|. ......-+.....+.+++..+.++.|..+|.+..++.+..+++ ...|++++++.++... .+.
T Consensus 21 ~~~~vvv~f~-a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v---~~vPt~~i~~~g~~~~~~~~~-- 94 (113)
T cd02975 21 NPVDLVVFSS-KEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGV---ERVPTTIFLQDGGKDGGIRYY-- 94 (113)
T ss_pred CCeEEEEEeC-CCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCC---CcCCEEEEEeCCeecceEEEE--
Confidence 4445555443 3344555667778888888886699999999999999999999 7889999998642211 222
Q ss_pred CCCCcccchhHHHHHHHHHhc
Q 013240 347 ESIDEEDQGSQISRFLEGYRE 367 (447)
Q Consensus 347 ~~~~~~~~~~~i~~Fl~~~~~ 367 (447)
+....+.+.+|+.++++
T Consensus 95 ----G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 95 ----GLPAGYEFASLIEDIVR 111 (113)
T ss_pred ----ecCchHHHHHHHHHHHh
Confidence 33445689999988864
No 224
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.03 E-value=0.0068 Score=46.88 Aligned_cols=82 Identities=15% Similarity=0.289 Sum_probs=59.6
Q ss_pred hhhHHhhhcCC--CcEEEEEEeCCChhhHHHHHHHHHHHHHh-CCCceEEEEeccchHhHHhhcCCCCCCCCceEEEEeC
Q 013240 260 QDTLNLLKDDK--RKIVLAIVEDETEEKSQKLVTTLKAAASA-NRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 336 (447)
Q Consensus 260 ~~~~~~~~~~~--~~~vl~~~~~~~~~~~~~~~~~l~~~a~~-~~~~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~ 336 (447)
++.++...... +++++.|+. .....-......|.+++.+ +.++.|..+|.+..+++++.+++ ...|++++++.
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~-~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i---~~~Pt~~~~~~ 77 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWA-PWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEI---TAVPTFVFFRN 77 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEEC-CCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCC---ccccEEEEEEC
Confidence 44555554444 667776664 4555556777889999988 55699999999988999999999 77999999986
Q ss_pred CccceecCC
Q 013240 337 NENYLTVIG 345 (447)
Q Consensus 337 ~~~y~~~~g 345 (447)
++......|
T Consensus 78 g~~~~~~~g 86 (97)
T cd02984 78 GTIVDRVSG 86 (97)
T ss_pred CEEEEEEeC
Confidence 544433333
No 225
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.02 E-value=0.006 Score=62.90 Aligned_cols=99 Identities=16% Similarity=0.202 Sum_probs=75.4
Q ss_pred CeEEeChhhHHHhHccC-CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEE
Q 013240 44 KVIELDESNFDSAISSF-DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (447)
Q Consensus 44 ~v~~l~~~~f~~~~~~~-~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~ 122 (447)
.-..|+++..+.+-+=+ +.-+-.|+++.|++|......+.+++.. ++.|..-.+|+..+++++.+|++.++|+++
T Consensus 100 ~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~----~p~i~~~~id~~~~~~~~~~~~v~~VP~~~ 175 (515)
T TIGR03140 100 HGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALL----NPNISHTMIDGALFQDEVEALGIQGVPAVF 175 (515)
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh----CCCceEEEEEchhCHHHHHhcCCcccCEEE
Confidence 34556666666554423 4558889999999998777777666654 345888999999999999999999999997
Q ss_pred EEeCCeeEEecCCCCHHHHHHHHHHhc
Q 013240 123 IFMHGIPTEYYGPRKAELLVRYLKKFV 149 (447)
Q Consensus 123 ~~~~g~~~~y~g~~~~~~i~~fi~~~~ 149 (447)
+ +|. ..+.|..+.+++.+.+.+..
T Consensus 176 i--~~~-~~~~g~~~~~~~~~~l~~~~ 199 (515)
T TIGR03140 176 L--NGE-EFHNGRMDLAELLEKLEETA 199 (515)
T ss_pred E--CCc-EEEecCCCHHHHHHHHhhcc
Confidence 6 444 44789888888888876653
No 226
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.02 E-value=0.0023 Score=47.88 Aligned_cols=57 Identities=25% Similarity=0.390 Sum_probs=40.9
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccc-h----hhhhhCCCccccEEEEEeCCee
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-S----RLASKQEIDAFPTLKIFMHGIP 129 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~-~----~l~~~~~i~~~Ptl~~~~~g~~ 129 (447)
++.|+++||++|+.+.+.+.++.. ...+..++.+.+ . .+.+..|..++|++ |.+|..
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~ 63 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKF 63 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence 578999999999999998888653 245566666544 2 34456788899997 456644
No 227
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.99 E-value=0.0038 Score=46.49 Aligned_cols=58 Identities=19% Similarity=0.258 Sum_probs=42.3
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccc---hhhhhhCCCccccEEEEEeCCee
Q 013240 61 DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY---SRLASKQEIDAFPTLKIFMHGIP 129 (447)
Q Consensus 61 ~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~---~~l~~~~~i~~~Ptl~~~~~g~~ 129 (447)
+.-++.|+.+||++|++....+++. + +.+-.+|++.+ ..+....|...+|.+++ +|+.
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~-----g----i~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~ 67 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK-----G----YDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKL 67 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc-----C----CCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEE
Confidence 3447789999999999998887641 2 66677888765 34555678899999964 6654
No 228
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=96.98 E-value=0.008 Score=53.75 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=59.7
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc---------------------------chhhhhhCC
Q 013240 62 YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---------------------------YSRLASKQE 114 (447)
Q Consensus 62 ~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~---------------------------~~~l~~~~~ 114 (447)
.+|+.|++.||+.|....+.+.++++++++.+ +.+..|+++. +..+++.||
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g--v~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg 105 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRN--VKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG 105 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence 44557789999999999999999999998654 6666666653 245778888
Q ss_pred Cc----c----ccEEEEEe-CCeeEE-ecC----CCCHHHHHHHHHHh
Q 013240 115 ID----A----FPTLKIFM-HGIPTE-YYG----PRKAELLVRYLKKF 148 (447)
Q Consensus 115 i~----~----~Ptl~~~~-~g~~~~-y~g----~~~~~~i~~fi~~~ 148 (447)
+. + .|+.+++. +|+... +.+ .++.+++.+.++.+
T Consensus 106 ~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 106 MIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred CccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 75 2 34577775 465442 223 56778888777654
No 229
>PRK13599 putative peroxiredoxin; Provisional
Probab=96.96 E-value=0.009 Score=53.83 Aligned_cols=86 Identities=15% Similarity=0.225 Sum_probs=62.6
Q ss_pred Ce-EEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc---------------------------chhhhhh
Q 013240 61 DY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---------------------------YSRLASK 112 (447)
Q Consensus 61 ~~-~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~---------------------------~~~l~~~ 112 (447)
++ +|+.|++.||+.|..-.+.+.+++.++...+ +.+..|+++. +.++++.
T Consensus 29 k~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g--v~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 29 KWFVLFSHPADFTPVCTTEFVEFARKANDFKELN--TELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 44 4677889999999999999999999987654 5566666643 2356777
Q ss_pred CCCc-------cccEEEEEeC-CeeEE---e--cCCCCHHHHHHHHHHh
Q 013240 113 QEID-------AFPTLKIFMH-GIPTE---Y--YGPRKAELLVRYLKKF 148 (447)
Q Consensus 113 ~~i~-------~~Ptl~~~~~-g~~~~---y--~g~~~~~~i~~fi~~~ 148 (447)
||+. ..|+.+++.. |+... | ...++.++|.+.+..+
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8873 5799999975 65432 2 2347888888888754
No 230
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.95 E-value=0.0089 Score=46.41 Aligned_cols=87 Identities=15% Similarity=0.202 Sum_probs=62.0
Q ss_pred hhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHhHHhhcCCCCCCCCceEEEEeCCccceecC
Q 013240 266 LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVI 344 (447)
Q Consensus 266 ~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~~~~y~~~~ 344 (447)
+...++++++.|.. .....-......+.++++++.+ +.|..+|.++.+++++.+++ ...|++++++.++......
T Consensus 9 ~~~~~~~vlv~f~a-~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v---~~vPt~~i~~~g~~v~~~~ 84 (97)
T cd02949 9 YHESDRLILVLYTS-PTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGI---MGTPTVQFFKDKELVKEIS 84 (97)
T ss_pred HHhCCCeEEEEEEC-CCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCC---eeccEEEEEECCeEEEEEe
Confidence 44455666666654 4555556777788888888875 89999999988999999999 7899999997654433333
Q ss_pred CCCCCCcccchhHHHHHH
Q 013240 345 GSESIDEEDQGSQISRFL 362 (447)
Q Consensus 345 g~~~~~~~~~~~~i~~Fl 362 (447)
| ..+.+.+.+|+
T Consensus 85 g------~~~~~~~~~~l 96 (97)
T cd02949 85 G------VKMKSEYREFI 96 (97)
T ss_pred C------CccHHHHHHhh
Confidence 3 23345677665
No 231
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=96.87 E-value=0.011 Score=46.45 Aligned_cols=93 Identities=10% Similarity=0.155 Sum_probs=64.8
Q ss_pred hhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC----CceEEEEeccchHhHHhhcCCCCCCCCceEEEEeC
Q 013240 261 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR----ELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 336 (447)
Q Consensus 261 ~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~----~~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~ 336 (447)
+++++.. .++++++.|+. .....-......+.+++..++ ++.++.+|+..++.+++.+++ ...|++++++.
T Consensus 7 ~~~~~~~-~~~~vlv~f~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I---~~~Pt~~l~~~ 81 (104)
T cd03000 7 DSFKDVR-KEDIWLVDFYA-PWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGV---RGYPTIKLLKG 81 (104)
T ss_pred hhhhhhc-cCCeEEEEEEC-CCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCC---ccccEEEEEcC
Confidence 4555543 34566666664 345555666667777877763 288999999988999999999 78999999975
Q ss_pred CccceecCCCCCCCcccchhHHHHHHHHH
Q 013240 337 NENYLTVIGSESIDEEDQGSQISRFLEGY 365 (447)
Q Consensus 337 ~~~y~~~~g~~~~~~~~~~~~i~~Fl~~~ 365 (447)
+.. ..+. +..+.+.|.+|++++
T Consensus 82 ~~~-~~~~------G~~~~~~l~~~~~~~ 103 (104)
T cd03000 82 DLA-YNYR------GPRTKDDIVEFANRV 103 (104)
T ss_pred CCc-eeec------CCCCHHHHHHHHHhh
Confidence 432 2233 345677999999875
No 232
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.81 E-value=0.016 Score=45.72 Aligned_cols=89 Identities=17% Similarity=0.230 Sum_probs=66.7
Q ss_pred ChhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeC--
Q 013240 49 DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH-- 126 (447)
Q Consensus 49 ~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~-- 126 (447)
+.+++++++...+..+|-|+..--+ .....|.++|..++.. +.|+... ...+..++++ .|++++|++
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d---~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~ 75 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRES---FRFAHTS---DKQLLEKYGY--GEGVVLFRPPR 75 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhc---CEEEEEC---hHHHHHhcCC--CCceEEEechh
Confidence 3566888888888888888866433 5678899999888543 7786655 4577888888 789999954
Q ss_pred ------CeeEEecCCCCHHHHHHHHHHh
Q 013240 127 ------GIPTEYYGPRKAELLVRYLKKF 148 (447)
Q Consensus 127 ------g~~~~y~g~~~~~~i~~fi~~~ 148 (447)
.....|.|..+.+.|.+|+...
T Consensus 76 ~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 76 LSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hhcccCcccccccCcCCHHHHHHHHHhh
Confidence 2334599998999999999754
No 233
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.79 E-value=0.023 Score=50.20 Aligned_cols=108 Identities=13% Similarity=0.130 Sum_probs=77.3
Q ss_pred hCCCCccccChhhHHh-hhcCC--CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCceEEEEeccchHhHHhhcCCCCCC
Q 013240 250 NFLPLSVPINQDTLNL-LKDDK--RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKS 326 (447)
Q Consensus 250 ~~~p~~~~l~~~~~~~-~~~~~--~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~~i~~~~ 326 (447)
..+..+.+++...|.. +.... .++|+.|+.+ ....-..+...|..+|.+|+++.|+.+|++. ....|++ .
T Consensus 79 ~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~-wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~---~~~~~~i---~ 151 (192)
T cd02988 79 SKFGEVYEISKPDYVREVTEASKDTWVVVHLYKD-GIPLCRLLNQHLSELARKFPDTKFVKIISTQ---CIPNYPD---K 151 (192)
T ss_pred CCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECC-CCchHHHHHHHHHHHHHHCCCCEEEEEEhHH---hHhhCCC---C
Confidence 3566777778777754 44333 4677777653 5555677778999999999999999999964 3577887 7
Q ss_pred CCceEEEEeCCccceecCCCCCCC-cccchhHHHHHHHH
Q 013240 327 KLPKMVVWDGNENYLTVIGSESID-EEDQGSQISRFLEG 364 (447)
Q Consensus 327 ~~P~vvi~~~~~~y~~~~g~~~~~-~~~~~~~i~~Fl~~ 364 (447)
..|+++++..++....+.|...+. ..++.+.|..++..
T Consensus 152 ~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 152 NLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 899999999876554555544332 36778888888764
No 234
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.78 E-value=0.0042 Score=48.52 Aligned_cols=63 Identities=22% Similarity=0.218 Sum_probs=41.1
Q ss_pred HhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchh-------hhhhCCCccccEEEEEeCC
Q 013240 55 SAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR-------LASKQEIDAFPTLKIFMHG 127 (447)
Q Consensus 55 ~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~-------l~~~~~i~~~Ptl~~~~~g 127 (447)
+.+++++ ++.|..+||++|++....+.+. + +.+..+|.+.+++ +.+..|...+|.+ |.+|
T Consensus 3 ~~i~~~~--Vvvysk~~Cp~C~~ak~~L~~~-------~--i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g 69 (99)
T TIGR02189 3 RMVSEKA--VVIFSRSSCCMCHVVKRLLLTL-------G--VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGG 69 (99)
T ss_pred hhhccCC--EEEEECCCCHHHHHHHHHHHHc-------C--CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECC
Confidence 3454433 6778899999999987766653 2 4455677765533 3333467899997 4566
Q ss_pred eeE
Q 013240 128 IPT 130 (447)
Q Consensus 128 ~~~ 130 (447)
+.+
T Consensus 70 ~~i 72 (99)
T TIGR02189 70 KLV 72 (99)
T ss_pred EEE
Confidence 444
No 235
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.76 E-value=0.01 Score=54.91 Aligned_cols=81 Identities=17% Similarity=0.219 Sum_probs=56.6
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEe----------------Cc--------------------
Q 013240 61 DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD----------------AD-------------------- 104 (447)
Q Consensus 61 ~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd----------------~~-------------------- 104 (447)
+..++.|+.+.|++|++++++..++.+. + +|.+..+- |.
T Consensus 118 k~~I~vFtDp~CpyC~kl~~~l~~~~~~--g---~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~ 192 (251)
T PRK11657 118 PRIVYVFADPNCPYCKQFWQQARPWVDS--G---KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLK 192 (251)
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHhhc--C---ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCC
Confidence 5678899999999999998887665432 1 12221111 11
Q ss_pred --------------cchhhhhhCCCccccEEEEEeC-CeeEEecCCCCHHHHHHHHH
Q 013240 105 --------------KYSRLASKQEIDAFPTLKIFMH-GIPTEYYGPRKAELLVRYLK 146 (447)
Q Consensus 105 --------------~~~~l~~~~~i~~~Ptl~~~~~-g~~~~y~g~~~~~~i~~fi~ 146 (447)
++.++.+++|++|+|++++-.+ |.+....|...++.|.+.+.
T Consensus 193 ~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 193 PPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 1234777799999999998864 66666789888888887764
No 236
>PRK13189 peroxiredoxin; Provisional
Probab=96.75 E-value=0.01 Score=53.73 Aligned_cols=87 Identities=16% Similarity=0.203 Sum_probs=60.3
Q ss_pred CCeE-EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc---------------------------chhhhh
Q 013240 60 FDYI-LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---------------------------YSRLAS 111 (447)
Q Consensus 60 ~~~~-lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~---------------------------~~~l~~ 111 (447)
.+++ |+.|++.||+.|....+.+.+.++++++.+ +.+..|+++. ..++++
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~--v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~ 112 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN--TELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAK 112 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHH
Confidence 3544 456679999999999999999999987654 4555555542 245677
Q ss_pred hCCCc-------cccEEEEEe-CCeeEE---e--cCCCCHHHHHHHHHHh
Q 013240 112 KQEID-------AFPTLKIFM-HGIPTE---Y--YGPRKAELLVRYLKKF 148 (447)
Q Consensus 112 ~~~i~-------~~Ptl~~~~-~g~~~~---y--~g~~~~~~i~~fi~~~ 148 (447)
.||+. ..|+.+++. +|+... | ...|+.+++.+.+..+
T Consensus 113 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 113 KLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred HhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 78865 468888887 465432 2 2567888888877654
No 237
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=96.74 E-value=0.017 Score=48.91 Aligned_cols=89 Identities=13% Similarity=0.253 Sum_probs=63.2
Q ss_pred ccccChhhHHhhhc-C-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--ceEEEEeccchHhHHhhcCCCC---CCC
Q 013240 255 SVPINQDTLNLLKD-D-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANK---KSK 327 (447)
Q Consensus 255 ~~~l~~~~~~~~~~-~-~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~~i~~---~~~ 327 (447)
+.++++++++.... . +.++++.|+. .....-+.+...+.++++++.+ +.|+.||++++++.++.+++.. ..+
T Consensus 30 v~~l~~~~f~~~l~~~~~~~vvV~Fya-~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~ 108 (152)
T cd02962 30 IKYFTPKTLEEELERDKRVTWLVEFFT-TWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQ 108 (152)
T ss_pred cEEcCHHHHHHHHHhcCCCEEEEEEEC-CCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCC
Confidence 44666777766442 2 3456666665 3556667788889999998763 9999999999999999999821 134
Q ss_pred CceEEEEeCCccceecC
Q 013240 328 LPKMVVWDGNENYLTVI 344 (447)
Q Consensus 328 ~P~vvi~~~~~~y~~~~ 344 (447)
.|+++++..++......
T Consensus 109 ~PT~ilf~~Gk~v~r~~ 125 (152)
T cd02962 109 LPTIILFQGGKEVARRP 125 (152)
T ss_pred CCEEEEEECCEEEEEEe
Confidence 99999998765433333
No 238
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.73 E-value=0.011 Score=50.50 Aligned_cols=84 Identities=21% Similarity=0.305 Sum_probs=60.2
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc--c------------------------------
Q 013240 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--Y------------------------------ 106 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~--~------------------------------ 106 (447)
..++.++.|+...|+||.++.+.+.++.+.+-+ .++|.+..++.-. .
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~-~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYID-PGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQ 89 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccC-CCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 347889999999999999999999988877622 2357777776411 0
Q ss_pred ------------------------------------hhhhhhCCCccccEEEEEeCCeeEEecCCCCHHHHHHHHHH
Q 013240 107 ------------------------------------SRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKK 147 (447)
Q Consensus 107 ------------------------------------~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~i~~fi~~ 147 (447)
.+.++++||.++|++++ +|+. +.|..+.++|.+.|.+
T Consensus 90 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~--~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 90 ENFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY--VVGPYTIEELKELIDK 162 (162)
T ss_dssp HSTSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE--EETTTSHHHHHHHHHH
T ss_pred hccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE--eCCCCCHHHHHHHHcC
Confidence 02445568999999888 7766 4788888888887764
No 239
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.72 E-value=0.02 Score=44.99 Aligned_cols=91 Identities=9% Similarity=0.081 Sum_probs=59.7
Q ss_pred hHHhhhcCCCcEEEEEEeCCChhhHHHHHHHH---HHHHHhCC-CceEEEEeccc----hHhHHhhcCCCCCCCCceEEE
Q 013240 262 TLNLLKDDKRKIVLAIVEDETEEKSQKLVTTL---KAAASANR-ELVFCYVGIKQ----FADFADTFEANKKSKLPKMVV 333 (447)
Q Consensus 262 ~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l---~~~a~~~~-~~~f~~vd~~~----~~~~~~~~~i~~~~~~P~vvi 333 (447)
.+......++++++.|.. .....-..+...+ .+++..+. ++.++.+|..+ .+.+++.+++ ...|++++
T Consensus 3 ~~~~~~~~~k~vlv~f~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i---~~~Pti~~ 78 (104)
T cd02953 3 ALAQALAQGKPVFVDFTA-DWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGV---FGPPTYLF 78 (104)
T ss_pred HHHHHHHcCCeEEEEEEc-chhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCC---CCCCEEEE
Confidence 455555666788877765 3444444444444 35566665 58899999865 5788899998 78999999
Q ss_pred EeC-Cc-cceecCCCCCCCcccchhHHHHHH
Q 013240 334 WDG-NE-NYLTVIGSESIDEEDQGSQISRFL 362 (447)
Q Consensus 334 ~~~-~~-~y~~~~g~~~~~~~~~~~~i~~Fl 362 (447)
++. ++ ...... +..+.+++.++|
T Consensus 79 ~~~~~g~~~~~~~------G~~~~~~l~~~l 103 (104)
T cd02953 79 YGPGGEPEPLRLP------GFLTADEFLEAL 103 (104)
T ss_pred ECCCCCCCCcccc------cccCHHHHHHHh
Confidence 996 43 333333 344566777766
No 240
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.71 E-value=0.0054 Score=44.17 Aligned_cols=56 Identities=21% Similarity=0.294 Sum_probs=40.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhh----hhhCCCccccEEEEEeCCeeE
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL----ASKQEIDAFPTLKIFMHGIPT 130 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l----~~~~~i~~~Ptl~~~~~g~~~ 130 (447)
++.|+++||++|+.+.+.+.+.. +.+..+|...+.+. .+..+...+|+++ .+|..+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~i 61 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILEDGELREELKELSGWPTVPQIF--INGEFI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence 56788999999999988877642 55677888776543 3345777888774 466544
No 241
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.67 E-value=0.011 Score=42.96 Aligned_cols=66 Identities=24% Similarity=0.398 Sum_probs=44.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchh---hhhhCCCccccEEEEEeCCeeEEecCCCCHHH
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR---LASKQEIDAFPTLKIFMHGIPTEYYGPRKAEL 140 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~---l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~ 140 (447)
++.|..+||++|.+....+.+. + +.+-.+|.+.+.. +-+..|...+|.+ |.+|+.+ | ..++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-------~--i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i---g--g~~~ 66 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-------G--ISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI---G--GSDD 66 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------C--CCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE---e--CHHH
Confidence 6788999999999997776641 2 6667777766543 3333588899997 4566543 3 2566
Q ss_pred HHHHH
Q 013240 141 LVRYL 145 (447)
Q Consensus 141 i~~fi 145 (447)
|.+|+
T Consensus 67 l~~~l 71 (72)
T cd03029 67 LEKYF 71 (72)
T ss_pred HHHHh
Confidence 66664
No 242
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.66 E-value=0.009 Score=44.70 Aligned_cols=77 Identities=26% Similarity=0.271 Sum_probs=58.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCC---eeEEecCCCCHHH
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAEL 140 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g---~~~~y~g~~~~~~ 140 (447)
++.|+.+.|+-|..+...+.++... .++.+-.||.++++++..+|+. ..|.+.+-..+ ......+..+.+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~-----~~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~ 75 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE-----FPFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQ 75 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT-----STCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh-----cCceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHH
Confidence 6889999999999998888876532 2388999999999999999996 69997663321 1344678888899
Q ss_pred HHHHHH
Q 013240 141 LVRYLK 146 (447)
Q Consensus 141 i~~fi~ 146 (447)
|.+|++
T Consensus 76 L~~~L~ 81 (81)
T PF05768_consen 76 LRAWLE 81 (81)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 988874
No 243
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.65 E-value=0.019 Score=42.92 Aligned_cols=71 Identities=10% Similarity=0.227 Sum_probs=49.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhh---hhCCCccccEEEEEeCCeeEEecCCCCHHH
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA---SKQEIDAFPTLKIFMHGIPTEYYGPRKAEL 140 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~---~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~ 140 (447)
++.|+.+||++|++....+++ ++ |.|-.+|.+.+++.. +..|...+|++++ ++.. -++...+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~g----I~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~~---~~Gf~~~~ 68 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RG----FDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDLS---WSGFRPDM 68 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CC----CceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCEE---EecCCHHH
Confidence 567889999999998777754 22 788889998877643 3457788999965 3322 33556677
Q ss_pred HHHHHHHh
Q 013240 141 LVRYLKKF 148 (447)
Q Consensus 141 i~~fi~~~ 148 (447)
|.+.+...
T Consensus 69 l~~~~~~~ 76 (81)
T PRK10329 69 INRLHPAP 76 (81)
T ss_pred HHHHHHhh
Confidence 76666543
No 244
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=96.63 E-value=0.022 Score=50.77 Aligned_cols=87 Identities=18% Similarity=0.248 Sum_probs=60.3
Q ss_pred CCeEEEEEEC-CCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccc----------------------------hhhh
Q 013240 60 FDYILVDFYA-PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY----------------------------SRLA 110 (447)
Q Consensus 60 ~~~~lV~f~~-~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~----------------------------~~l~ 110 (447)
.++++|.||+ .||++|....+.+.+.++++...+ +.+..|+++.. .+++
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g--~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia 113 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN--CEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIA 113 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHH
Confidence 4688889994 889999999999999999988654 66666666522 3567
Q ss_pred hhCCCc------cccEEEEEeC-CeeEE-e----cCCCCHHHHHHHHHHh
Q 013240 111 SKQEID------AFPTLKIFMH-GIPTE-Y----YGPRKAELLVRYLKKF 148 (447)
Q Consensus 111 ~~~~i~------~~Ptl~~~~~-g~~~~-y----~g~~~~~~i~~fi~~~ 148 (447)
+.||+. .+|+.+++.+ |+... + .-.++.+++++.+...
T Consensus 114 ~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 114 RSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 778875 3688888875 54432 2 2245666666655443
No 245
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.63 E-value=0.0047 Score=45.03 Aligned_cols=66 Identities=15% Similarity=0.232 Sum_probs=45.9
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhC---CCccccEEEEEeCCeeEEecCCCCHHHH
Q 013240 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQ---EIDAFPTLKIFMHGIPTEYYGPRKAELL 141 (447)
Q Consensus 65 V~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~---~i~~~Ptl~~~~~g~~~~y~g~~~~~~i 141 (447)
+.|+.++|++|++....+++ .+ +.+-.+|.+.++.....+ |..++|.+++ +|. ..-|+...+.|
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-----~~----i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~~ 68 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-----HG----IAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDKL 68 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----CC----CceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHHH
Confidence 56778999999999887764 12 778888998887665544 8889999755 332 23445556555
Q ss_pred HH
Q 013240 142 VR 143 (447)
Q Consensus 142 ~~ 143 (447)
.+
T Consensus 69 ~~ 70 (72)
T TIGR02194 69 KA 70 (72)
T ss_pred Hh
Confidence 44
No 246
>PRK13191 putative peroxiredoxin; Provisional
Probab=96.62 E-value=0.019 Score=51.78 Aligned_cols=87 Identities=11% Similarity=0.150 Sum_probs=60.9
Q ss_pred CCeEEE-EEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc---------------------------chhhhh
Q 013240 60 FDYILV-DFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---------------------------YSRLAS 111 (447)
Q Consensus 60 ~~~~lV-~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~---------------------------~~~l~~ 111 (447)
++++++ .|+++||+.|....+.+.+.++++++.+ +.+..|+++. +.++++
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g--~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~ 110 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN--TELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAK 110 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHH
Confidence 344444 6679999999999999999999997654 5566666542 235666
Q ss_pred hCCCc-------cccEEEEEeC-CeeEE---e--cCCCCHHHHHHHHHHh
Q 013240 112 KQEID-------AFPTLKIFMH-GIPTE---Y--YGPRKAELLVRYLKKF 148 (447)
Q Consensus 112 ~~~i~-------~~Ptl~~~~~-g~~~~---y--~g~~~~~~i~~fi~~~ 148 (447)
.||+. ..|+.+++.. |+... | .-.|+.+++.+.++.+
T Consensus 111 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 111 RLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 77763 3688888864 65432 2 2357888888888654
No 247
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=96.57 E-value=0.027 Score=44.28 Aligned_cols=82 Identities=16% Similarity=0.218 Sum_probs=57.6
Q ss_pred hhhHHhhhc--CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCceEEEEeccch---HhHHhhcCCCCCCCCceEEEE
Q 013240 260 QDTLNLLKD--DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQF---ADFADTFEANKKSKLPKMVVW 334 (447)
Q Consensus 260 ~~~~~~~~~--~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~---~~~~~~~~i~~~~~~P~vvi~ 334 (447)
.+.+..... .++++++.|+.+ ....-......|.+++++++++.|+.+|+++. .++++.+++ ...|+++++
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~-wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V---~~~Pt~~~~ 78 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALK-HSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKI---IEVPHFLFY 78 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECC-CCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCC---CcCCEEEEE
Confidence 344544432 256777777653 45555677788999999997799999998765 378899998 789999998
Q ss_pred eCCccceecCC
Q 013240 335 DGNENYLTVIG 345 (447)
Q Consensus 335 ~~~~~y~~~~g 345 (447)
..++....+.|
T Consensus 79 ~~G~~v~~~~G 89 (103)
T cd02985 79 KDGEKIHEEEG 89 (103)
T ss_pred eCCeEEEEEeC
Confidence 65544334443
No 248
>PHA03050 glutaredoxin; Provisional
Probab=96.48 E-value=0.0083 Score=47.58 Aligned_cols=68 Identities=10% Similarity=0.074 Sum_probs=43.4
Q ss_pred HHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc---c----hhhhhhCCCccccEEEEEe
Q 013240 53 FDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---Y----SRLASKQEIDAFPTLKIFM 125 (447)
Q Consensus 53 f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~---~----~~l~~~~~i~~~Ptl~~~~ 125 (447)
.++.+++++ ++.|..+||++|++....+++..-.. -.+-.+|.++ . ..+-+.-|.+.+|+++ .
T Consensus 6 v~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~------~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~If--I 75 (108)
T PHA03050 6 VQQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKR------GAYEIVDIKEFKPENELRDYFEQITGGRTVPRIF--F 75 (108)
T ss_pred HHHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCc------CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEE--E
Confidence 345555544 77899999999999988887653211 1345566654 2 2345556888999984 4
Q ss_pred CCeeE
Q 013240 126 HGIPT 130 (447)
Q Consensus 126 ~g~~~ 130 (447)
+|+.+
T Consensus 76 ~g~~i 80 (108)
T PHA03050 76 GKTSI 80 (108)
T ss_pred CCEEE
Confidence 55443
No 249
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=96.46 E-value=0.0036 Score=57.74 Aligned_cols=97 Identities=23% Similarity=0.432 Sum_probs=76.9
Q ss_pred hHHHhH--ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEe-CccchhhhhhCCCccccEEEEEeCCe
Q 013240 52 NFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD-ADKYSRLASKQEIDAFPTLKIFMHGI 128 (447)
Q Consensus 52 ~f~~~~--~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd-~~~~~~l~~~~~i~~~Ptl~~~~~g~ 128 (447)
....++ ++..++-+.||+.||+..+..+|+++-....+.. |....|+ ....+++..++++++.|++.+...--
T Consensus 66 ~l~~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~----i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~ 141 (319)
T KOG2640|consen 66 VLLDAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS----IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTC 141 (319)
T ss_pred HHHHhhccccCCcccccchhcccCcccccCcccchhhhhccc----cccccHHHHhhcccchhccccccCCcceeecccc
Confidence 344455 3478999999999999999999999987776652 2222222 23457788999999999999999888
Q ss_pred eEEecCCCCHHHHHHHHHHhcCCC
Q 013240 129 PTEYYGPRKAELLVRYLKKFVAPD 152 (447)
Q Consensus 129 ~~~y~g~~~~~~i~~fi~~~~~~~ 152 (447)
+..|.|.+...+|++|..+.++-.
T Consensus 142 ~~~~~~~r~l~sLv~fy~~i~~~~ 165 (319)
T KOG2640|consen 142 PASYRGERDLASLVNFYTEITPMS 165 (319)
T ss_pred chhhcccccHHHHHHHHHhhccch
Confidence 899999999999999999887643
No 250
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.45 E-value=0.054 Score=42.47 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=68.9
Q ss_pred eEEe-ChhhHHHhHc-cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEE
Q 013240 45 VIEL-DESNFDSAIS-SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (447)
Q Consensus 45 v~~l-~~~~f~~~~~-~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~ 122 (447)
+..+ +.++++++++ .++..+|-|+..--+ .....|.++|..++. .+.|+... +.++...+++. .|.+.
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~---d~~F~~~~---~~~~~~~~~~~-~~~i~ 71 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP---YIKFFATF---DSKVAKKLGLK-MNEVD 71 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhc---CCEEEEEC---cHHHHHHcCCC-CCcEE
Confidence 3455 4566899998 788888888866433 456779999988854 37776554 45777788775 79999
Q ss_pred EEeC-C-eeEEe-cCCCCHHHHHHHHHHh
Q 013240 123 IFMH-G-IPTEY-YGPRKAELLVRYLKKF 148 (447)
Q Consensus 123 ~~~~-g-~~~~y-~g~~~~~~i~~fi~~~ 148 (447)
++++ . ....| .|..+.+.|.+|+...
T Consensus 72 l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 72 FYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred EeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 9976 3 34569 8888999999998753
No 251
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.39 E-value=0.0047 Score=45.91 Aligned_cols=55 Identities=15% Similarity=0.368 Sum_probs=38.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhh----hCCCccccEEEEEeCCee
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLAS----KQEIDAFPTLKIFMHGIP 129 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~----~~~i~~~Ptl~~~~~g~~ 129 (447)
++.|+.+||++|+.....+++. + +.+-.+|.+.+++..+ ..|..++|+++ .+|+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~----i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~--i~g~~ 59 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----G----VTFTEIRVDGDPALRDEMMQRSGRRTVPQIF--IGDVH 59 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----C----CCcEEEEecCCHHHHHHHHHHhCCCCcCEEE--ECCEE
Confidence 3568899999999998888752 2 5566777777655433 34778899974 45543
No 252
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.38 E-value=0.0075 Score=44.22 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=39.5
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhh----hCCCc-cccEEEEEeCCeeE
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLAS----KQEID-AFPTLKIFMHGIPT 130 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~----~~~i~-~~Ptl~~~~~g~~~ 130 (447)
++.|+.+||++|+.+...+.+. + +.+-.+|.+.+++..+ ..+.. ++|+++ .+|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~----i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----G----VDYEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----C----CcEEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCEEE
Confidence 5678899999999988777651 2 6777888887655433 35666 899874 455443
No 253
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.33 E-value=0.012 Score=42.89 Aligned_cols=54 Identities=13% Similarity=0.280 Sum_probs=39.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchh----hhhhCCCccccEEEEEeCCe
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR----LASKQEIDAFPTLKIFMHGI 128 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~----l~~~~~i~~~Ptl~~~~~g~ 128 (447)
++.|+.+||++|++....+++ .+ +.+-.+|++.++. +.+..+-..+|+++ .+|+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-----~g----i~~~~~di~~~~~~~~el~~~~g~~~vP~v~--i~~~ 60 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-----KG----LPYVEINIDIFPERKAELEERTGSSVVPQIF--FNEK 60 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-----CC----CceEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCE
Confidence 577889999999999877775 12 6677888887664 45555778889984 3454
No 254
>PLN02309 5'-adenylylsulfate reductase
Probab=96.30 E-value=0.054 Score=54.26 Aligned_cols=104 Identities=11% Similarity=0.160 Sum_probs=76.0
Q ss_pred CCccccChhhHHhhh---cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--ceEEEEecc-chHhHHh-hcCCCCC
Q 013240 253 PLSVPINQDTLNLLK---DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIK-QFADFAD-TFEANKK 325 (447)
Q Consensus 253 p~~~~l~~~~~~~~~---~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~-~~~~~~~-~~~i~~~ 325 (447)
+.+..++.++++.+. ..++++++.|+. .....-+.+...+.++|.++.+ +.|+.+|++ ...+++. .+++
T Consensus 345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyA-pWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I--- 420 (457)
T PLN02309 345 QNVVALSRAGIENLLKLENRKEPWLVVLYA-PWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQL--- 420 (457)
T ss_pred CCcEECCHHHHHHHHHhhcCCCeEEEEEEC-CCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCC---
Confidence 467789999998865 355677777765 3555667777889999998764 999999998 7778886 5899
Q ss_pred CCCceEEEEeCCc-cceecCCCCCCCcccchhHHHHHHHHH
Q 013240 326 SKLPKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFLEGY 365 (447)
Q Consensus 326 ~~~P~vvi~~~~~-~y~~~~g~~~~~~~~~~~~i~~Fl~~~ 365 (447)
..+|+++++..+. ....+.| +.-+.+.|..|++.+
T Consensus 421 ~~~PTil~f~~g~~~~v~Y~~-----~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 421 GSFPTILLFPKNSSRPIKYPS-----EKRDVDSLLSFVNSL 456 (457)
T ss_pred ceeeEEEEEeCCCCCeeecCC-----CCcCHHHHHHHHHHh
Confidence 7899999998653 2222321 234567899999865
No 255
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=96.24 E-value=0.1 Score=41.86 Aligned_cols=80 Identities=10% Similarity=0.087 Sum_probs=58.4
Q ss_pred ccccChhhHHhhhc-CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC---C-ceEEEEecc--chHhHHhhcCCCCCCC
Q 013240 255 SVPINQDTLNLLKD-DKRKIVLAIVEDETEEKSQKLVTTLKAAASANR---E-LVFCYVGIK--QFADFADTFEANKKSK 327 (447)
Q Consensus 255 ~~~l~~~~~~~~~~-~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~---~-~~f~~vd~~--~~~~~~~~~~i~~~~~ 327 (447)
+.+++..+++.... .+.++++.|+. .....-..+...+.++++.++ + +.|+.+|+. ....+++.+++ ..
T Consensus 3 v~~l~~~~f~~~i~~~~~~vvV~f~a-~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i---~~ 78 (114)
T cd02992 3 VIVLDAASFNSALLGSPSAWLVEFYA-SWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGV---TG 78 (114)
T ss_pred eEECCHHhHHHHHhcCCCeEEEEEEC-CCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCC---CC
Confidence 55778888887544 44566766664 355555667777888888654 3 889999975 35678999999 78
Q ss_pred CceEEEEeCCc
Q 013240 328 LPKMVVWDGNE 338 (447)
Q Consensus 328 ~P~vvi~~~~~ 338 (447)
+|++.++..+.
T Consensus 79 ~Pt~~lf~~~~ 89 (114)
T cd02992 79 YPTLRYFPPFS 89 (114)
T ss_pred CCEEEEECCCC
Confidence 99999998764
No 256
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=96.19 E-value=0.068 Score=53.57 Aligned_cols=104 Identities=10% Similarity=0.104 Sum_probs=74.8
Q ss_pred CCccccChhhHHhhhc---CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--ceEEEEeccch-HhHH-hhcCCCCC
Q 013240 253 PLSVPINQDTLNLLKD---DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQF-ADFA-DTFEANKK 325 (447)
Q Consensus 253 p~~~~l~~~~~~~~~~---~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~-~~~~-~~~~i~~~ 325 (447)
+.+..+|..+|+.+.. .++++++.|+. .....-+.+...+.++|.++.+ +.|+.||++.. .+++ +.+++
T Consensus 351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyA-pWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I--- 426 (463)
T TIGR00424 351 NNVVSLSRPGIENLLKLEERKEAWLVVLYA-PWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQL--- 426 (463)
T ss_pred CCeEECCHHHHHHHHhhhcCCCeEEEEEEC-CCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCC---
Confidence 4678899999998753 55677777765 3556667778889999998864 88999998754 3455 67999
Q ss_pred CCCceEEEEeCCc-cceecCCCCCCCcccchhHHHHHHHHH
Q 013240 326 SKLPKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFLEGY 365 (447)
Q Consensus 326 ~~~P~vvi~~~~~-~y~~~~g~~~~~~~~~~~~i~~Fl~~~ 365 (447)
..+|+++++..++ .-..+.| +.-+.+.|..|++.+
T Consensus 427 ~~~PTii~Fk~g~~~~~~Y~~-----g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 427 GSFPTILFFPKHSSRPIKYPS-----EKRDVDSLMSFVNLL 462 (463)
T ss_pred CccceEEEEECCCCCceeCCC-----CCCCHHHHHHHHHhh
Confidence 7899999998753 2222321 234567899998764
No 257
>PHA02278 thioredoxin-like protein
Probab=96.16 E-value=0.094 Score=41.19 Aligned_cols=82 Identities=11% Similarity=0.120 Sum_probs=58.7
Q ss_pred hhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccch----HhHHhhcCCCCCCCCceEEEE
Q 013240 260 QDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQF----ADFADTFEANKKSKLPKMVVW 334 (447)
Q Consensus 260 ~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~----~~~~~~~~i~~~~~~P~vvi~ 334 (447)
...|......+.++++.|+.+ ....-+.....+.+++.++.. ..|..+|.+.. +++++.+++ ...|+++++
T Consensus 4 ~~~~~~~i~~~~~vvV~F~A~-WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I---~~iPT~i~f 79 (103)
T PHA02278 4 LVDLNTAIRQKKDVIVMITQD-NCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI---MSTPVLIGY 79 (103)
T ss_pred HHHHHHHHhCCCcEEEEEECC-CCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC---ccccEEEEE
Confidence 345666556677888877753 555556677788888877433 67888888754 678899999 789999999
Q ss_pred eCCccceecCC
Q 013240 335 DGNENYLTVIG 345 (447)
Q Consensus 335 ~~~~~y~~~~g 345 (447)
+.++......|
T Consensus 80 k~G~~v~~~~G 90 (103)
T PHA02278 80 KDGQLVKKYED 90 (103)
T ss_pred ECCEEEEEEeC
Confidence 97654444433
No 258
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=96.04 E-value=0.21 Score=39.68 Aligned_cols=96 Identities=13% Similarity=0.195 Sum_probs=65.2
Q ss_pred CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHhHHhhcCCCCCCCCceEEEEeCCccceecCCCC
Q 013240 269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSE 347 (447)
Q Consensus 269 ~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~~~~y~~~~g~~ 347 (447)
.++++|+-|.. .....-......|.++|+++++ +.|..||.++.+++++.+++ ...|+++++..++....--|..
T Consensus 13 ~~klVVVdF~a-~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I---~amPtfvffkngkh~~~d~gt~ 88 (114)
T cd02986 13 AEKVLVLRFGR-DEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDI---SYIPSTIFFFNGQHMKVDYGSP 88 (114)
T ss_pred CCCEEEEEEeC-CCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCc---eeCcEEEEEECCcEEEEecCCC
Confidence 35666766665 4555567777899999999998 99999999999999999999 6689988887654333222221
Q ss_pred CCC---c-ccchhHHHHHHHHHhcC
Q 013240 348 SID---E-EDQGSQISRFLEGYREG 368 (447)
Q Consensus 348 ~~~---~-~~~~~~i~~Fl~~~~~g 368 (447)
+-+ . -.+.+.+...++-+..|
T Consensus 89 ~~~k~~~~~~~k~~~idi~e~~yr~ 113 (114)
T cd02986 89 DHTKFVGSFKTKQDFIDLIEVIYRG 113 (114)
T ss_pred CCcEEEEEcCchhHHHHHHHHHHcC
Confidence 111 0 12345566666555544
No 259
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.02 E-value=0.058 Score=46.55 Aligned_cols=110 Identities=18% Similarity=0.211 Sum_probs=76.2
Q ss_pred CCCCeEEeChhhHHHhH---ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCcc
Q 013240 41 IDGKVIELDESNFDSAI---SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA 117 (447)
Q Consensus 41 ~~~~v~~l~~~~f~~~~---~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~ 117 (447)
.-+.|..++..+|.+.+ .+.-.++|..|...-+.|.-+...+.++|..+.. +.|.++-.+.. ...|-=..
T Consensus 89 kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~----iKFVki~at~c---IpNYPe~n 161 (240)
T KOG3170|consen 89 KFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ----IKFVKIPATTC---IPNYPESN 161 (240)
T ss_pred cccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc----ceEEecccccc---cCCCcccC
Confidence 34789999999999877 3345778889999999999999999999988765 77877764332 23456677
Q ss_pred ccEEEEEeCCeeE-------EecCCCCHHHHHHHHHHhcCCCceecC
Q 013240 118 FPTLKIFMHGIPT-------EYYGPRKAELLVRYLKKFVAPDVSILN 157 (447)
Q Consensus 118 ~Ptl~~~~~g~~~-------~y~g~~~~~~i~~fi~~~~~~~v~~i~ 157 (447)
.|||++|.+|... .+.|....-.=++|+--..++.+.+..
T Consensus 162 lPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qaga~l~d~~ 208 (240)
T KOG3170|consen 162 LPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAGAALTDGD 208 (240)
T ss_pred CCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhccccccccc
Confidence 8999999998543 244444333333344444444444443
No 260
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.99 E-value=0.022 Score=43.59 Aligned_cols=59 Identities=19% Similarity=0.306 Sum_probs=42.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCc--c------------------------------chhhhh
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD--K------------------------------YSRLAS 111 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~--~------------------------------~~~l~~ 111 (447)
++.|+.+.|++|..+.+.+.++..... .++.+..+... . +..+++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADD---GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALAR 77 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcC---CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 467999999999999999999874332 23555555432 1 124567
Q ss_pred hCCCccccEEEEEe
Q 013240 112 KQEIDAFPTLKIFM 125 (447)
Q Consensus 112 ~~~i~~~Ptl~~~~ 125 (447)
+.|+.++|++++..
T Consensus 78 ~~g~~g~Pt~v~~~ 91 (98)
T cd02972 78 ALGVTGTPTFVVNG 91 (98)
T ss_pred HcCCCCCCEEEECC
Confidence 78999999999854
No 261
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=95.83 E-value=0.13 Score=41.78 Aligned_cols=102 Identities=14% Similarity=0.116 Sum_probs=69.4
Q ss_pred ccccChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCceEEEEeccc-----------hHhHHhhcCCC
Q 013240 255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQ-----------FADFADTFEAN 323 (447)
Q Consensus 255 ~~~l~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~-----------~~~~~~~~~i~ 323 (447)
+.+++...+......+...++.|.. .....-+.+...|++++++. +..+.++|.+. ..++.+.++++
T Consensus 8 ~~~it~~~~~~~i~~~~~~iv~f~~-~~Cp~C~~~~P~l~~~~~~~-~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 8 LEVTTVVRALEALDKKETATFFIGR-KTCPYCRKFSGTLSGVVAQT-KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred ceecCHHHHHHHHHcCCcEEEEEEC-CCChhHHHHhHHHHHHHHhc-CCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 4566777777766666776666653 56777788889999999984 36788888863 24676777652
Q ss_pred -CCCCCceEEEEeCCccceecCCCCCCCcccchhHHHHHHH
Q 013240 324 -KKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLE 363 (447)
Q Consensus 324 -~~~~~P~vvi~~~~~~y~~~~g~~~~~~~~~~~~i~~Fl~ 363 (447)
.-...|++++++.++.-....|. ..+.++|.+|+.
T Consensus 86 ~~i~~~PT~v~~k~Gk~v~~~~G~-----~~~~~~l~~~~~ 121 (122)
T TIGR01295 86 TSFMGTPTFVHITDGKQVSVRCGS-----STTAQELQDIAA 121 (122)
T ss_pred ccCCCCCEEEEEeCCeEEEEEeCC-----CCCHHHHHHHhh
Confidence 12568999999986544444432 335678888874
No 262
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.81 E-value=0.034 Score=43.17 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=43.0
Q ss_pred hhHHHhHccCCeEEEEEE----CCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhh----hhCCCccccEEE
Q 013240 51 SNFDSAISSFDYILVDFY----APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA----SKQEIDAFPTLK 122 (447)
Q Consensus 51 ~~f~~~~~~~~~~lV~f~----~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~----~~~~i~~~Ptl~ 122 (447)
+-..+++++++. +|.-. .|||++|++....+.+. + +.+..+|.+++++.. +..|-..+|.++
T Consensus 3 ~~v~~~i~~~~V-vvf~kg~~~~~~Cp~C~~ak~lL~~~-----~----i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf 72 (97)
T TIGR00365 3 ERIKEQIKENPV-VLYMKGTPQFPQCGFSARAVQILKAC-----G----VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY 72 (97)
T ss_pred HHHHHHhccCCE-EEEEccCCCCCCCchHHHHHHHHHHc-----C----CCEEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence 344566766443 44333 39999999988777663 2 567778887665443 345677889985
Q ss_pred EEeCCee
Q 013240 123 IFMHGIP 129 (447)
Q Consensus 123 ~~~~g~~ 129 (447)
.+|+.
T Consensus 73 --i~g~~ 77 (97)
T TIGR00365 73 --VKGEF 77 (97)
T ss_pred --ECCEE
Confidence 45543
No 263
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.032 Score=41.60 Aligned_cols=51 Identities=22% Similarity=0.383 Sum_probs=36.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccch-----hhhhhC-CCccccEEEE
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-----RLASKQ-EIDAFPTLKI 123 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~-----~l~~~~-~i~~~Ptl~~ 123 (447)
++.|..++|++|++....+.+ .+ +.+..++.+.+. +..++- |.+.+|.+++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~-------~g--~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR-------KG--VDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH-------cC--CCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 567889999999998777763 12 667777776554 334444 7899999876
No 264
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=95.59 E-value=0.3 Score=40.64 Aligned_cols=109 Identities=14% Similarity=0.162 Sum_probs=68.4
Q ss_pred hhhHHhhh--cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHhHHhhcCCCCCCCCc-eEEEEe
Q 013240 260 QDTLNLLK--DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLP-KMVVWD 335 (447)
Q Consensus 260 ~~~~~~~~--~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~~i~~~~~~P-~vvi~~ 335 (447)
...++... ..++++++-|+. .-...-....+.|.++|+++++ +.|..||.++.+++++.+++ .+.| .+.+++
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A-~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I---~~~~t~~~ffk 86 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGH-DWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYEL---YDPCTVMFFFR 86 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEEC-CCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCc---cCCCcEEEEEE
Confidence 45555433 244566666665 4555556777899999999998 77899999999999999999 3454 454776
Q ss_pred CCc-cceecCCCCC--CCcccchhHHHHHHHHHhcCcccc
Q 013240 336 GNE-NYLTVIGSES--IDEEDQGSQISRFLEGYREGRTEQ 372 (447)
Q Consensus 336 ~~~-~y~~~~g~~~--~~~~~~~~~i~~Fl~~~~~gkl~~ 372 (447)
.++ .-....|.-. .....+.+++.+-++.++.|-.+.
T Consensus 87 ~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~g 126 (142)
T PLN00410 87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKG 126 (142)
T ss_pred CCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 543 2222222100 001235667777777666665443
No 265
>PRK10638 glutaredoxin 3; Provisional
Probab=95.51 E-value=0.058 Score=40.47 Aligned_cols=56 Identities=11% Similarity=0.244 Sum_probs=39.3
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchh----hhhhCCCccccEEEEEeCCeeE
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR----LASKQEIDAFPTLKIFMHGIPT 130 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~----l~~~~~i~~~Ptl~~~~~g~~~ 130 (447)
++.|..+||++|++....+++. + +.+..+|++.+++ +.+..|...+|+++ .+|+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----g----i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~--~~g~~i 63 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----G----VSFQEIPIDGDAAKREEMIKRSGRTTVPQIF--IDAQHI 63 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----C----CCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence 5677789999999987777752 2 5667788876653 34455778899884 356444
No 266
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.38 E-value=0.13 Score=38.06 Aligned_cols=73 Identities=11% Similarity=0.176 Sum_probs=52.6
Q ss_pred CCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHhHHhhcCCCCCCCCceEEEEeCCccceecCCCCCCCcccchhHH
Q 013240 280 DETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQI 358 (447)
Q Consensus 280 ~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~~~~y~~~~g~~~~~~~~~~~~i 358 (447)
......-......+.+++..++. +.+..+|..+.++.++.+|+ ...|++++ +++ . ... +..+.+.+
T Consensus 8 ~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~vPt~~~-~g~--~-~~~------G~~~~~~l 74 (82)
T TIGR00411 8 SPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGI---MAVPAIVI-NGD--V-EFI------GAPTKEEL 74 (82)
T ss_pred CCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCC---ccCCEEEE-CCE--E-EEe------cCCCHHHH
Confidence 34555667777888888888765 88999999888999999998 67899876 432 2 222 23345678
Q ss_pred HHHHHHH
Q 013240 359 SRFLEGY 365 (447)
Q Consensus 359 ~~Fl~~~ 365 (447)
.++++..
T Consensus 75 ~~~l~~~ 81 (82)
T TIGR00411 75 VEAIKKR 81 (82)
T ss_pred HHHHHhh
Confidence 8877654
No 267
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.24 E-value=0.06 Score=41.13 Aligned_cols=65 Identities=15% Similarity=0.320 Sum_probs=41.2
Q ss_pred HHhHccCCeEEEEEEC----CCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhh----hhhCCCccccEEEEEe
Q 013240 54 DSAISSFDYILVDFYA----PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL----ASKQEIDAFPTLKIFM 125 (447)
Q Consensus 54 ~~~~~~~~~~lV~f~~----~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l----~~~~~i~~~Ptl~~~~ 125 (447)
+++++++ +++|.-.+ |||++|+++...+.+. + +.+..+|...++++ .+..|-..+|.+ |.
T Consensus 2 ~~~i~~~-~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-------~--i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi 69 (90)
T cd03028 2 KKLIKEN-PVVLFMKGTPEEPRCGFSRKVVQILNQL-------G--VDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YV 69 (90)
T ss_pred hhhhccC-CEEEEEcCCCCCCCCcHHHHHHHHHHHc-------C--CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EE
Confidence 3456554 43443332 7999999987776653 2 66777787766554 334577889997 44
Q ss_pred CCeeE
Q 013240 126 HGIPT 130 (447)
Q Consensus 126 ~g~~~ 130 (447)
+|+.+
T Consensus 70 ~g~~i 74 (90)
T cd03028 70 NGELV 74 (90)
T ss_pred CCEEE
Confidence 66543
No 268
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=95.23 E-value=0.68 Score=37.02 Aligned_cols=104 Identities=19% Similarity=0.373 Sum_probs=62.4
Q ss_pred ccccChhhHHhhhcCCCcEEEEEEeCC--ChhhHHHHHHHHHHHHHhCCCceEEEEeccc-----hHhHHhhcCCCCCCC
Q 013240 255 SVPINQDTLNLLKDDKRKIVLAIVEDE--TEEKSQKLVTTLKAAASANRELVFCYVGIKQ-----FADFADTFEANKKSK 327 (447)
Q Consensus 255 ~~~l~~~~~~~~~~~~~~~vl~~~~~~--~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~-----~~~~~~~~~i~~~~~ 327 (447)
...|+.-+|+.+...-+..++ =|+-. ..+..+++.+.-++.+....++.++.|..++ +.++++.|++ .+.+
T Consensus 6 ~v~LD~~tFdKvi~kf~~~LV-KFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i-~ke~ 83 (126)
T PF07912_consen 6 CVPLDELTFDKVIPKFKYVLV-KFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKI-DKED 83 (126)
T ss_dssp SEEESTTHHHHHGGGSSEEEE-EEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT--SCCC
T ss_pred eeeccceehhheeccCceEEE-EEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCC-Cccc
Confidence 456788889888766554444 34322 2334333333222333344569999997764 4779999999 5678
Q ss_pred CceEEEEeCC-ccceecCCCCCCCcccchhHHHHHHHH
Q 013240 328 LPKMVVWDGN-ENYLTVIGSESIDEEDQGSQISRFLEG 364 (447)
Q Consensus 328 ~P~vvi~~~~-~~y~~~~g~~~~~~~~~~~~i~~Fl~~ 364 (447)
+|.+.++..+ ..+-.+. .+++++.++|..|+.+
T Consensus 84 fPv~~LF~~~~~~pv~~p----~~~~~t~~~l~~fvk~ 117 (126)
T PF07912_consen 84 FPVIYLFVGDKEEPVRYP----FDGDVTADNLQRFVKS 117 (126)
T ss_dssp -SEEEEEESSTTSEEEE-----TCS-S-HHHHHHHHHH
T ss_pred CCEEEEecCCCCCCccCC----ccCCccHHHHHHHHHh
Confidence 9999999854 2333332 2456788999999965
No 269
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.17 Score=39.91 Aligned_cols=67 Identities=16% Similarity=0.364 Sum_probs=54.1
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCceEEEEeccchHhHHhhcCCCCCCCCceEEEEeCCccc
Q 013240 270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENY 340 (447)
Q Consensus 270 ~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~~~~y 340 (447)
++++++-|+. .....-......+.++|.+|+++.|..||.++..++++.+++ ...|+++++..++.-
T Consensus 21 ~kliVvdF~a-~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V---~~~PTf~f~k~g~~~ 87 (106)
T KOG0907|consen 21 DKLVVVDFYA-TWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNV---KAMPTFVFYKGGEEV 87 (106)
T ss_pred CCeEEEEEEC-CCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCc---eEeeEEEEEECCEEE
Confidence 4667776764 344445667788999999999999999999988999999998 789999999876433
No 270
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.13 E-value=0.88 Score=47.01 Aligned_cols=113 Identities=12% Similarity=0.115 Sum_probs=85.8
Q ss_pred CCCeEEEEcCCCCCcccccCCCChHHHHHHHHhh---CCCCccccChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHH
Q 013240 217 KVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN---FLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTL 293 (447)
Q Consensus 217 ~~P~l~~~~~~~~~~~~~~g~~~~~~i~~fI~~~---~~p~~~~l~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l 293 (447)
..|++.+.+++.+....|.|--...++..||..- .-+ -..+++...+.+...++|+-+.+|...+.+.-......+
T Consensus 60 ~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~ 138 (517)
T PRK15317 60 RKPSFSITRPGEDTGVRFAGIPMGHEFTSLVLALLQVGGH-PPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQAL 138 (517)
T ss_pred CCCEEEEEcCCccceEEEEecCccHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHH
Confidence 3599988875444456788765556677776543 333 456788888888777778766666556666667778888
Q ss_pred HHHHHhCCCceEEEEeccchHhHHhhcCCCCCCCCceEEE
Q 013240 294 KAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV 333 (447)
Q Consensus 294 ~~~a~~~~~~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi 333 (447)
.++|..++++.+-.+|+.+++++++.+++ ...|++++
T Consensus 139 ~~~a~~~~~i~~~~id~~~~~~~~~~~~v---~~VP~~~i 175 (517)
T PRK15317 139 NLMAVLNPNITHTMIDGALFQDEVEARNI---MAVPTVFL 175 (517)
T ss_pred HHHHHhCCCceEEEEEchhCHhHHHhcCC---cccCEEEE
Confidence 99999999999999999999999999988 78999976
No 271
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=95.10 E-value=0.016 Score=50.59 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=25.5
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCc
Q 013240 66 DFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104 (447)
Q Consensus 66 ~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~ 104 (447)
+|+.|.|+.|-.++|.|.++...+.+. |.+--|-..
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~---i~~~~i~~~ 37 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK---IEFRFIPGG 37 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT---EEEEEEE--
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc---EEEEEEEcc
Confidence 589999999999999999999987653 655555443
No 272
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=95.10 E-value=0.23 Score=40.38 Aligned_cols=98 Identities=17% Similarity=0.202 Sum_probs=61.7
Q ss_pred HHhhhcCC-CcEEEEEEeCCChhhHHHHHHHHH---HHHHhCC-CceEEEEeccc-------------hHhHHhhcCCCC
Q 013240 263 LNLLKDDK-RKIVLAIVEDETEEKSQKLVTTLK---AAASANR-ELVFCYVGIKQ-------------FADFADTFEANK 324 (447)
Q Consensus 263 ~~~~~~~~-~~~vl~~~~~~~~~~~~~~~~~l~---~~a~~~~-~~~f~~vd~~~-------------~~~~~~~~~i~~ 324 (447)
+......+ +++++.|.. .....-+.....+. .+...+. ++.+..+|... ..+++..+++
T Consensus 6 ~~~a~~~~~k~vlv~f~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v-- 82 (125)
T cd02951 6 LAEAAADGKKPLLLLFSQ-PGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV-- 82 (125)
T ss_pred HHHHHHcCCCcEEEEEeC-CCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC--
Confidence 34444555 778877764 34443444443332 3333333 37788887764 3678888998
Q ss_pred CCCCceEEEEeCC-c-cceecCCCCCCCcccchhHHHHHHHHHhcCcc
Q 013240 325 KSKLPKMVVWDGN-E-NYLTVIGSESIDEEDQGSQISRFLEGYREGRT 370 (447)
Q Consensus 325 ~~~~P~vvi~~~~-~-~y~~~~g~~~~~~~~~~~~i~~Fl~~~~~gkl 370 (447)
...|++++++.+ + ......| ..+.+.+.++++.++++..
T Consensus 83 -~~~Pt~~~~~~~gg~~~~~~~G------~~~~~~~~~~l~~~~~~~~ 123 (125)
T cd02951 83 -RFTPTVIFLDPEGGKEIARLPG------YLPPDEFLAYLEYVQEKAY 123 (125)
T ss_pred -ccccEEEEEcCCCCceeEEecC------CCCHHHHHHHHHHHHhhhh
Confidence 679999999986 3 3333333 3456789999999888754
No 273
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.98 E-value=1.1 Score=46.39 Aligned_cols=113 Identities=11% Similarity=0.127 Sum_probs=85.0
Q ss_pred CCCeEEEEcCCCCCcccccCCCChHHHHHHHHh---hCCCCccccChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHH
Q 013240 217 KVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQ---NFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTL 293 (447)
Q Consensus 217 ~~P~l~~~~~~~~~~~~~~g~~~~~~i~~fI~~---~~~p~~~~l~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l 293 (447)
..|++.+..++.+....|.|--...++..||.. ..-+ -..++++..+.+...++|+-+.+|...+.+.-......+
T Consensus 61 ~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~ 139 (515)
T TIGR03140 61 RKPSFTILRDGADTGIRFAGIPGGHEFTSLVLAILQVGGH-GPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQAL 139 (515)
T ss_pred CCCeEEEecCCcccceEEEecCCcHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHH
Confidence 459998876544455678875555556666644 3333 367788888888777777766555555666667777888
Q ss_pred HHHHHhCCCceEEEEeccchHhHHhhcCCCCCCCCceEEE
Q 013240 294 KAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV 333 (447)
Q Consensus 294 ~~~a~~~~~~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi 333 (447)
.++|..++++..-++|+..++++++.+++ ...|++++
T Consensus 140 ~~~a~~~p~i~~~~id~~~~~~~~~~~~v---~~VP~~~i 176 (515)
T TIGR03140 140 NQMALLNPNISHTMIDGALFQDEVEALGI---QGVPAVFL 176 (515)
T ss_pred HHHHHhCCCceEEEEEchhCHHHHHhcCC---cccCEEEE
Confidence 99999999999999999999999999988 68999976
No 274
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=94.54 E-value=0.33 Score=39.52 Aligned_cols=105 Identities=13% Similarity=0.077 Sum_probs=62.1
Q ss_pred cChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHH-HH--HHHHHh-CCCceEEEEeccchHhHHhh--------cCCCCC
Q 013240 258 INQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVT-TL--KAAASA-NRELVFCYVGIKQFADFADT--------FEANKK 325 (447)
Q Consensus 258 l~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~-~l--~~~a~~-~~~~~f~~vd~~~~~~~~~~--------~~i~~~ 325 (447)
.++..+......++|+++.|..+ ....-+.+.+ .+ .+++.. ++++.++.+|.++.++..+. +|.
T Consensus 3 ~~~eal~~Ak~~~KpVll~f~a~-WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~--- 78 (124)
T cd02955 3 WGEEAFEKARREDKPIFLSIGYS-TCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQ--- 78 (124)
T ss_pred CCHHHHHHHHHcCCeEEEEEccC-CCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCC---
Confidence 34566777777888888877643 3332222221 11 123333 34578888998776665442 344
Q ss_pred CCCceEEEEeCCccceecCCCCCCCcccchhHHHHHHHHHh
Q 013240 326 SKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 366 (447)
Q Consensus 326 ~~~P~vvi~~~~~~y~~~~g~~~~~~~~~~~~i~~Fl~~~~ 366 (447)
.+.|++++++++++-..-.+.....++.....+.++++.+.
T Consensus 79 ~G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (124)
T cd02955 79 GGWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIR 119 (124)
T ss_pred CCCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHH
Confidence 78999999999753322223333344555567777777664
No 275
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.44 E-value=0.26 Score=37.49 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=50.1
Q ss_pred cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCceEEEEeccchHhHHhhcCCCCCCCCceEEE
Q 013240 268 DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV 333 (447)
Q Consensus 268 ~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi 333 (447)
.-+.|+-+.+|.......-......+.+++..++++.|..+|..+.++.++.+|+ ...|++++
T Consensus 9 ~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V---~~vPt~vi 71 (89)
T cd03026 9 RLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGI---MSVPAIFL 71 (89)
T ss_pred hcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCC---ccCCEEEE
Confidence 4456766666655555555667778889999998899999999999999999999 67999975
No 276
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=94.41 E-value=0.69 Score=36.53 Aligned_cols=92 Identities=13% Similarity=0.081 Sum_probs=63.6
Q ss_pred EEe-ChhhHHHhHccC-CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEE
Q 013240 46 IEL-DESNFDSAISSF-DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123 (447)
Q Consensus 46 ~~l-~~~~f~~~~~~~-~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~ 123 (447)
..+ +.++++.++... +..+|-|+..--+ .....|.++|..++. .+.|+... +..+.+++++. .|.+++
T Consensus 3 ~~i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd---d~~F~~t~---~~~~~~~~~~~-~~~vvl 72 (107)
T cd03068 3 KQLQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRE---DYKFHHTF---DSEIFKSLKVS-PGQLVV 72 (107)
T ss_pred eEcCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhccc---CCEEEEEC---hHHHHHhcCCC-CCceEE
Confidence 344 456688888766 7888877766433 466778899988754 37786655 35777888876 578888
Q ss_pred EeCC--------eeEEecCC-CCHHH-HHHHHHH
Q 013240 124 FMHG--------IPTEYYGP-RKAEL-LVRYLKK 147 (447)
Q Consensus 124 ~~~g--------~~~~y~g~-~~~~~-i~~fi~~ 147 (447)
|++. +...|.|. .+.++ |..|++.
T Consensus 73 ~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 73 FQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred ECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 8653 23458887 56655 9999875
No 277
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=0.11 Score=46.66 Aligned_cols=96 Identities=22% Similarity=0.294 Sum_probs=69.4
Q ss_pred CceecCChhHHHHHHHhcCCcccEEEeecCCh--------hHHHHHHHHhhhhhHhHHhhccchhhhhhcCCCCCCeEEE
Q 013240 152 DVSILNSDAEVSDFVENAGTFFPLFIGFGLDE--------SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVA 223 (447)
Q Consensus 152 ~v~~i~s~~~~~~~l~~~~~~~~~vi~f~~~~--------~~~~~~a~~~~~~~~f~~~~~~~~~~~~~~~i~~~P~l~~ 223 (447)
+|+.++++++++.-+...... .+++-|+... ++|..+|.+|.+.++..+.-+..+.++..+|++..|+.++
T Consensus 2 ~Vi~v~~d~df~~~ls~ag~k-~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFif 80 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAAGGK-LVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIF 80 (288)
T ss_pred CeEEecCcHHHHHhhhccCce-EEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEE
Confidence 577889998888888776543 4677776442 3788889999876665555556778889999999999999
Q ss_pred EcCCCCCcccccCCCChHHHHHHHHhh
Q 013240 224 LQPSYNEHNIFYGPFDEEFLEEFIKQN 250 (447)
Q Consensus 224 ~~~~~~~~~~~~g~~~~~~i~~fI~~~ 250 (447)
|+++ .+...+.| -+...|++-|.++
T Consensus 81 f~ng-~kid~~qG-Ad~~gLe~kv~~~ 105 (288)
T KOG0908|consen 81 FRNG-VKIDQIQG-ADASGLEEKVAKY 105 (288)
T ss_pred EecC-eEeeeecC-CCHHHHHHHHHHH
Confidence 9874 22233444 4666777777766
No 278
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=94.16 E-value=0.11 Score=39.52 Aligned_cols=78 Identities=13% Similarity=0.146 Sum_probs=49.4
Q ss_pred eecCChhHHHHHHHhcCCcccEEEeecCCh-----hHHHHHHHHhhhhhHhHHhhccchhhhhhcCCCCCCeEEEEcCC-
Q 013240 154 SILNSDAEVSDFVENAGTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPS- 227 (447)
Q Consensus 154 ~~i~s~~~~~~~l~~~~~~~~~vi~f~~~~-----~~~~~~a~~~~~~~~f~~~~~~~~~~~~~~~i~~~P~l~~~~~~- 227 (447)
.++.+.+++.. +. ..+..+|||+.+. ..|+.+|..+++.+.|.+.. .+.. ......+ +.+++|++.
T Consensus 2 kef~~~~eL~~-id---~~kr~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~~--G~~~-~~~~~~~-~~~i~frp~~ 73 (91)
T cd03070 2 KEFRNLDELNN-VD---RSKRNIIGYFESKDSDEYDNFRKVANILRDDCSFLVGF--GDVT-KPERPPG-DNIIYFPPGH 73 (91)
T ss_pred ceecCHHHHHh-hC---cCCceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEEe--cccc-ccccCCC-CCeEEECCCC
Confidence 45666655554 32 2345899988442 38999999999998887762 2222 1112222 456778875
Q ss_pred CCCcccccCCCC
Q 013240 228 YNEHNIFYGPFD 239 (447)
Q Consensus 228 ~~~~~~~~g~~~ 239 (447)
......|.|+++
T Consensus 74 ~~~~~~y~G~~t 85 (91)
T cd03070 74 NAPDMVYLGSLT 85 (91)
T ss_pred CCCceEEccCCC
Confidence 445578999875
No 279
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=93.99 E-value=0.19 Score=45.04 Aligned_cols=40 Identities=18% Similarity=0.453 Sum_probs=29.9
Q ss_pred CeEEEEEECCCChhhhhhhHHH---HHHHHHhhcCCCCeEEEEEeC
Q 013240 61 DYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVDA 103 (447)
Q Consensus 61 ~~~lV~f~~~~C~~C~~~~p~~---~~~a~~l~~~~~~v~~~~Vd~ 103 (447)
++-+|.|++-.|+||.+++|.+ ..+.+.+.+ ++.+..+..
T Consensus 38 ~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~---~v~~~~~~~ 80 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE---GTKMTKYHV 80 (207)
T ss_pred CCeEEEEeCCCCccHHHhcccccchHHHHHhCCC---CCeEEEecc
Confidence 5679999999999999999876 666665533 366665554
No 280
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=93.88 E-value=0.47 Score=38.25 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=53.2
Q ss_pred hhhHHhhhcC--CCcEEEEEEeC------CChhhHHHHHHHHHHHHHhCC-CceEEEEeccc-------hHhHHhhcCCC
Q 013240 260 QDTLNLLKDD--KRKIVLAIVED------ETEEKSQKLVTTLKAAASANR-ELVFCYVGIKQ-------FADFADTFEAN 323 (447)
Q Consensus 260 ~~~~~~~~~~--~~~~vl~~~~~------~~~~~~~~~~~~l~~~a~~~~-~~~f~~vd~~~-------~~~~~~~~~i~ 323 (447)
.+.+.+.... ++++++.|+.+ .-...-......+++++.+++ ++.|..||..+ ..++...+++
T Consensus 9 ~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I- 87 (119)
T cd02952 9 YEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL- 87 (119)
T ss_pred HHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc-
Confidence 3445444433 56888888763 233344566678889999988 49999999865 3578888888
Q ss_pred CCCCCceEEEEeCC
Q 013240 324 KKSKLPKMVVWDGN 337 (447)
Q Consensus 324 ~~~~~P~vvi~~~~ 337 (447)
. ...|++++++..
T Consensus 88 ~-~~iPT~~~~~~~ 100 (119)
T cd02952 88 T-TGVPTLLRWKTP 100 (119)
T ss_pred c-cCCCEEEEEcCC
Confidence 3 489999999543
No 281
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=93.67 E-value=0.74 Score=39.97 Aligned_cols=49 Identities=16% Similarity=0.223 Sum_probs=39.6
Q ss_pred cCCeEEEEEECCCC-hhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccch
Q 013240 59 SFDYILVDFYAPWC-GHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS 107 (447)
Q Consensus 59 ~~~~~lV~f~~~~C-~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~ 107 (447)
..++++|.|.=..| ..|-.....+.++.+.+...+.++.+..|.++-++
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~ 100 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPER 100 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTT
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCC
Confidence 56899999988888 58999999999999998876667888888876443
No 282
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=93.67 E-value=0.33 Score=45.10 Aligned_cols=114 Identities=15% Similarity=0.239 Sum_probs=66.3
Q ss_pred CCCccccC-hhhHHhhhc-CC--CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCceEEEEeccchHhHHhhcCCCCCCC
Q 013240 252 LPLSVPIN-QDTLNLLKD-DK--RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSK 327 (447)
Q Consensus 252 ~p~~~~l~-~~~~~~~~~-~~--~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~~i~~~~~ 327 (447)
+.-+.+++ .+.|-.... .+ ..+|+.|+.+ +......+...|..+|.+|+.+.|+-+.+..-+ +...|.. ..
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~-~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~---~~ 198 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEP-GFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPD---KN 198 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-T-TSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-T---TC
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeC-CCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcc---cC
Confidence 44555664 344544332 22 3466666654 445566778899999999999999999886533 5556655 78
Q ss_pred CceEEEEeCCccceecCCCC-CCCcccchhHHHHHHHHHhcCcccc
Q 013240 328 LPKMVVWDGNENYLTVIGSE-SIDEEDQGSQISRFLEGYREGRTEQ 372 (447)
Q Consensus 328 ~P~vvi~~~~~~y~~~~g~~-~~~~~~~~~~i~~Fl~~~~~gkl~~ 372 (447)
+|++++|..+....-+-|.. .+.+.++.+.|..||..+ |-+..
T Consensus 199 LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~--G~l~~ 242 (265)
T PF02114_consen 199 LPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY--GVLPE 242 (265)
T ss_dssp -SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT--TSSS-
T ss_pred CCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc--CCCCC
Confidence 99999999764343333322 223567788899998743 55443
No 283
>PTZ00062 glutaredoxin; Provisional
Probab=93.59 E-value=0.86 Score=40.56 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=51.4
Q ss_pred hhHHhhhcCC-CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCceEEEEeccchHhHHhhcCCCCCCCCceEEEEeCCcc
Q 013240 261 DTLNLLKDDK-RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNEN 339 (447)
Q Consensus 261 ~~~~~~~~~~-~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~~~~ 339 (447)
+.+..+...+ ...++.|. ....+........|..++++++++.|..||.+ +++ ...|++++++.++.
T Consensus 7 ee~~~~i~~~~g~~vl~f~-a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V---~~vPtfv~~~~g~~ 74 (204)
T PTZ00062 7 EEKDKLIESNTGKLVLYVK-SSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DAN---NEYGVFEFYQNSQL 74 (204)
T ss_pred HHHHHHHhcCCCcEEEEEe-CCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCc---ccceEEEEEECCEE
Confidence 3444444433 44555444 34567778889999999999999999999975 777 78999999987654
Q ss_pred ceecC
Q 013240 340 YLTVI 344 (447)
Q Consensus 340 y~~~~ 344 (447)
..-+.
T Consensus 75 i~r~~ 79 (204)
T PTZ00062 75 INSLE 79 (204)
T ss_pred Eeeee
Confidence 43333
No 284
>PRK10824 glutaredoxin-4; Provisional
Probab=93.17 E-value=0.18 Score=40.26 Aligned_cols=67 Identities=19% Similarity=0.286 Sum_probs=40.0
Q ss_pred hHHHhHccCCeEEEEEEC----CCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhh----CCCccccEEEE
Q 013240 52 NFDSAISSFDYILVDFYA----PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASK----QEIDAFPTLKI 123 (447)
Q Consensus 52 ~f~~~~~~~~~~lV~f~~----~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~----~~i~~~Ptl~~ 123 (447)
-.++++++++. +|.--. |||++|+++...+.+.. +.+..+|.+.++++... -|-+.+|.+++
T Consensus 7 ~v~~~I~~~~V-vvf~Kg~~~~p~Cpyc~~ak~lL~~~~---------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 7 KIQRQIAENPI-LLYMKGSPKLPSCGFSAQAVQALSACG---------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred HHHHHHhcCCE-EEEECCCCCCCCCchHHHHHHHHHHcC---------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 35566766443 333332 69999999987776642 44455666666554333 35667787654
Q ss_pred EeCCeeE
Q 013240 124 FMHGIPT 130 (447)
Q Consensus 124 ~~~g~~~ 130 (447)
+|+.+
T Consensus 77 --~G~~I 81 (115)
T PRK10824 77 --DGELV 81 (115)
T ss_pred --CCEEE
Confidence 55443
No 285
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=93.12 E-value=3.2 Score=37.13 Aligned_cols=60 Identities=17% Similarity=0.112 Sum_probs=43.6
Q ss_pred ChhhHHHhHccCCeEEEEEECCCCh-hhhhhhHHHHHHHHHhh-cCCCCeEEEEEeCccchh
Q 013240 49 DESNFDSAISSFDYILVDFYAPWCG-HCKRLAPQLDEAAPILA-KLKEPIVIAKVDADKYSR 108 (447)
Q Consensus 49 ~~~~f~~~~~~~~~~lV~f~~~~C~-~C~~~~p~~~~~a~~l~-~~~~~v~~~~Vd~~~~~~ 108 (447)
+.+.|...--+.++++|.|-=+.|+ -|......+.++.+.+. +.+.++.+.-|.+|-+++
T Consensus 56 ~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerD 117 (207)
T COG1999 56 DGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERD 117 (207)
T ss_pred CCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCC
Confidence 3344444444679999999766775 89999999999998888 556667777777765554
No 286
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=92.97 E-value=0.55 Score=33.22 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=39.2
Q ss_pred CChhhHHHHHHHHHHHHHhCCCceEEEEeccchHhHHhhcCCCCCCCCceEEE
Q 013240 281 ETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV 333 (447)
Q Consensus 281 ~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi 333 (447)
.....-+.....|.+++..+.++.|..+|..+.+++.+.+|+ ...|++++
T Consensus 9 ~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i---~~vPti~i 58 (67)
T cd02973 9 PTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGV---MSVPAIVI 58 (67)
T ss_pred CCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCC---cccCEEEE
Confidence 344444566677888887777799999999888889999998 67899865
No 287
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=92.51 E-value=0.67 Score=40.59 Aligned_cols=84 Identities=23% Similarity=0.313 Sum_probs=67.1
Q ss_pred CCCeEEeCh-hhHHHhHccC---CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCcc
Q 013240 42 DGKVIELDE-SNFDSAISSF---DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA 117 (447)
Q Consensus 42 ~~~v~~l~~-~~f~~~~~~~---~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~ 117 (447)
-+.|+++++ +.|-..+.+. -.++|..|-+.-.-|..+.....=+|.++. .+.|.++-.+ +....++|..++
T Consensus 137 ~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP----~vKFckikss-~~gas~~F~~n~ 211 (273)
T KOG3171|consen 137 YGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP----IVKFCKIKSS-NTGASDRFSLNV 211 (273)
T ss_pred cceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC----ceeEEEeeec-cccchhhhcccC
Confidence 357999954 7898888543 467888999999999999998888887653 4888888754 345577899999
Q ss_pred ccEEEEEeCCeeE
Q 013240 118 FPTLKIFMHGIPT 130 (447)
Q Consensus 118 ~Ptl~~~~~g~~~ 130 (447)
.|+|.+|.+|..+
T Consensus 212 lP~LliYkgGeLI 224 (273)
T KOG3171|consen 212 LPTLLIYKGGELI 224 (273)
T ss_pred CceEEEeeCCchh
Confidence 9999999999765
No 288
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=92.43 E-value=0.27 Score=48.96 Aligned_cols=54 Identities=13% Similarity=0.286 Sum_probs=38.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhh---hh---------CCCccccEEEEEeCCe
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA---SK---------QEIDAFPTLKIFMHGI 128 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~---~~---------~~i~~~Ptl~~~~~g~ 128 (447)
++.|+.+||++|++....+.+. + |.+-.+|.++++.-. ++ .|.+++|++++ +|+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----g----i~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~ 69 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----D----IPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDV 69 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----C----CCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCE
Confidence 6788999999999887766652 2 777888988766322 12 36788999965 454
No 289
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=91.99 E-value=1 Score=39.02 Aligned_cols=117 Identities=12% Similarity=0.128 Sum_probs=75.6
Q ss_pred HHHHHHHhhCCCCccccChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCceEEEEeccchHhHHhhcC
Q 013240 242 FLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFE 321 (447)
Q Consensus 242 ~i~~fI~~~~~p~~~~l~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~~ 321 (447)
.-..|+.+-.-.+-..-++..|-..+.....+|+.|+.+.. ..-+-.-+-|+.+|+.+-+.+|+.|++..-|-++..++
T Consensus 56 kr~~~~~~GhG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f-~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~ 134 (211)
T KOG1672|consen 56 KRKEWLSKGHGEYEEVASEKDFFEEVKKSEKVVCHFYRPEF-FRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLN 134 (211)
T ss_pred HHHHHHHcCCceEEEeccHHHHHHHhhcCceEEEEEEcCCC-cceehHHHHHHHHHHhcccceEEEEecccCceeeeeee
Confidence 34456665443333344466676666666788888885431 22223335678889999999999999998888999999
Q ss_pred CCCCCCCceEEEEeCCccceecCCCCCC--CcccchhHHHHHH
Q 013240 322 ANKKSKLPKMVVWDGNENYLTVIGSESI--DEEDQGSQISRFL 362 (447)
Q Consensus 322 i~~~~~~P~vvi~~~~~~y~~~~g~~~~--~~~~~~~~i~~Fl 362 (447)
| .-+|+++++......-.+-|.-.+ .+.++.+.+.+=|
T Consensus 135 I---kVLP~v~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL 174 (211)
T KOG1672|consen 135 I---KVLPTVALFKNGKTVDYVVGFTDLGNKDDFTTETLENRL 174 (211)
T ss_pred e---eEeeeEEEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHH
Confidence 9 779999999876422223333222 1345555555544
No 290
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=91.70 E-value=0.27 Score=42.55 Aligned_cols=42 Identities=26% Similarity=0.433 Sum_probs=33.3
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeC
Q 013240 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~ 103 (447)
..++.++.|+.+.|+||+.+++.+.++.+.+.+ ++.+..+..
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~---~v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK---DVKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC---CceEEEcCC
Confidence 568899999999999999999999998876632 365554443
No 291
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=91.68 E-value=2.1 Score=38.68 Aligned_cols=55 Identities=9% Similarity=0.051 Sum_probs=46.1
Q ss_pred cccCCCCeEEeChhh---HHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcC
Q 013240 38 KFKIDGKVIELDESN---FDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKL 92 (447)
Q Consensus 38 ~~~~~~~v~~l~~~~---f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~ 92 (447)
....+..|+.++.++ +-+..+.++|.++.|-|--|+.-..-.+.|+++++++...
T Consensus 77 ~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~ 134 (237)
T PF00837_consen 77 GPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV 134 (237)
T ss_pred CCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh
Confidence 445678899998877 4455578999999999988999999999999999988763
No 292
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=91.01 E-value=1.3 Score=37.42 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=45.3
Q ss_pred CCCCcccccccCCCCeEEeChhhHHHhHccCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeC
Q 013240 30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103 (447)
Q Consensus 30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~lV~f~-~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~ 103 (447)
+..++.-+++..++..+.|++- ..++++++|| ..+++-|-.-.-.|.+...+++..+ +.+.-|..
T Consensus 7 G~~aPdF~Lp~~~g~~v~Lsd~-------~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~--a~V~GIS~ 72 (157)
T COG1225 7 GDKAPDFELPDQDGETVSLSDL-------RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG--AVVLGISP 72 (157)
T ss_pred CCcCCCeEeecCCCCEEehHHh-------cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC--CEEEEEeC
Confidence 4455666666667777665532 3458999999 6788889888888998888888765 44444554
No 293
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=90.34 E-value=1.2 Score=34.97 Aligned_cols=68 Identities=21% Similarity=0.244 Sum_probs=41.4
Q ss_pred hHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccch-hh----hhhCCCccccEEEEEeC
Q 013240 52 NFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-RL----ASKQEIDAFPTLKIFMH 126 (447)
Q Consensus 52 ~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~-~l----~~~~~i~~~Ptl~~~~~ 126 (447)
..++++.++ + +|.|..+||+.|+.+...|.+ .+....+..+|-+.+. ++ .+--+-+.+|.+++ +
T Consensus 6 ~v~~~i~~~-~-VVifSKs~C~~c~~~k~ll~~-------~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~ 74 (104)
T KOG1752|consen 6 KVRKMISEN-P-VVIFSKSSCPYCHRAKELLSD-------LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--G 74 (104)
T ss_pred HHHHHhhcC-C-EEEEECCcCchHHHHHHHHHh-------CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--C
Confidence 355666543 3 567889999999998777776 2223455666654432 22 22235667888765 5
Q ss_pred CeeE
Q 013240 127 GIPT 130 (447)
Q Consensus 127 g~~~ 130 (447)
|+.+
T Consensus 75 Gk~i 78 (104)
T KOG1752|consen 75 GKFI 78 (104)
T ss_pred CEEE
Confidence 5444
No 294
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=88.75 E-value=4.9 Score=34.44 Aligned_cols=43 Identities=19% Similarity=0.354 Sum_probs=29.4
Q ss_pred HhHHhhcCCCCCCCCceEEEEeCCccce-ecCCCCCCCcccchhHHHHHHHHH
Q 013240 314 ADFADTFEANKKSKLPKMVVWDGNENYL-TVIGSESIDEEDQGSQISRFLEGY 365 (447)
Q Consensus 314 ~~~~~~~~i~~~~~~P~vvi~~~~~~y~-~~~g~~~~~~~~~~~~i~~Fl~~~ 365 (447)
...++.+|+ ...|.+++++.+++-. .+. +..+.+.+.++++++
T Consensus 128 ~~~~~~~~v---~~~P~~~lid~~g~i~~~~~------g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 128 RQVIDAYGV---GPLPTTFLIDKDGKVVKVIT------GEMTEEQLEEYLEKI 171 (173)
T ss_pred chHHHHcCC---CCcCeEEEECCCCcEEEEEe------CCCCHHHHHHHHHHh
Confidence 566778888 6789999999875333 222 334567888888765
No 295
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=87.80 E-value=1.7 Score=36.83 Aligned_cols=54 Identities=11% Similarity=0.062 Sum_probs=39.6
Q ss_pred CCeEEEEEE-CCCChhhhhh-hHHHHHHHHHhhcCCCCe-EEEEEeCcc---chhhhhhCCC
Q 013240 60 FDYILVDFY-APWCGHCKRL-APQLDEAAPILAKLKEPI-VIAKVDADK---YSRLASKQEI 115 (447)
Q Consensus 60 ~~~~lV~f~-~~~C~~C~~~-~p~~~~~a~~l~~~~~~v-~~~~Vd~~~---~~~l~~~~~i 115 (447)
++++++.|| +.||+.|..- .+.|.+..++++..+ + .+..|.++. ..+.|+++++
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g--~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG--VDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC--CCEEEEEECCCHHHHHHHHHhhCC
Confidence 356666666 7899999998 999999999998755 4 366666654 3446667766
No 296
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=87.58 E-value=4.8 Score=40.89 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=38.0
Q ss_pred HHHHHHHHhhh---hhH---hHHhhccchhhhhhcCCCCCCeEEEEcCCCCC---cccccCCCChHHHHHHH
Q 013240 185 VMSNLALKYKK---KAW---FAVAKDFSEDTMVLYDFDKVPALVALQPSYNE---HNIFYGPFDEEFLEEFI 247 (447)
Q Consensus 185 ~~~~~a~~~~~---~~~---f~~~~~~~~~~~~~~~i~~~P~l~~~~~~~~~---~~~~~g~~~~~~i~~fI 247 (447)
.|+.+|+.... ... +..+...+..++..|+|..+|+|.+|.++... ...+.|.-...++.+.+
T Consensus 78 tfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l 149 (606)
T KOG1731|consen 78 TFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQL 149 (606)
T ss_pred HHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHH
Confidence 56666665553 111 22234557789999999999999999886433 23344443334444443
No 297
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=86.89 E-value=4.2 Score=31.46 Aligned_cols=65 Identities=12% Similarity=0.166 Sum_probs=40.8
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCceEEEEeccch-----------------------HhHHhhcCCCC
Q 013240 270 KRKIVLAIVEDETEEKSQKLVTTLKAAASAN--RELVFCYVGIKQF-----------------------ADFADTFEANK 324 (447)
Q Consensus 270 ~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~--~~~~f~~vd~~~~-----------------------~~~~~~~~i~~ 324 (447)
+++.++.|+.. ....-......+.++..++ +++.++.++.+.. ..+.+.+++
T Consensus 19 ~k~~ll~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 95 (116)
T cd02966 19 GKVVLVNFWAS-WCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGV-- 95 (116)
T ss_pred CCEEEEEeecc-cChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCc--
Confidence 35555555532 3333455566677776666 3466666666543 566777777
Q ss_pred CCCCceEEEEeCCc
Q 013240 325 KSKLPKMVVWDGNE 338 (447)
Q Consensus 325 ~~~~P~vvi~~~~~ 338 (447)
...|.+++++.++
T Consensus 96 -~~~P~~~l~d~~g 108 (116)
T cd02966 96 -RGLPTTFLIDRDG 108 (116)
T ss_pred -CccceEEEECCCC
Confidence 4789999998765
No 298
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=86.17 E-value=0.84 Score=35.89 Aligned_cols=81 Identities=16% Similarity=0.162 Sum_probs=54.6
Q ss_pred ccccChhhHHhhhcCCCcEEEEEEeCCC-hhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHhHHhhcCCCCCCCCceEE
Q 013240 255 SVPINQDTLNLLKDDKRKIVLAIVEDET-EEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 332 (447)
Q Consensus 255 ~~~l~~~~~~~~~~~~~~~vl~~~~~~~-~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~~i~~~~~~P~vv 332 (447)
++.++..+++.+...+..+++++..|.. ..+..+..=+|-++.+.+.+ +..+.++......+...||+ ...|+++
T Consensus 11 ~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv---~~~PaLv 87 (107)
T PF07449_consen 11 WPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGV---RRWPALV 87 (107)
T ss_dssp EEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT----TSSSEEE
T ss_pred CeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCC---ccCCeEE
Confidence 4456677787777776777766653321 12333444477778888888 67777776666888899999 7899999
Q ss_pred EEeCCc
Q 013240 333 VWDGNE 338 (447)
Q Consensus 333 i~~~~~ 338 (447)
+++...
T Consensus 88 f~R~g~ 93 (107)
T PF07449_consen 88 FFRDGR 93 (107)
T ss_dssp EEETTE
T ss_pred EEECCE
Confidence 999763
No 299
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=85.98 E-value=8.6 Score=40.22 Aligned_cols=88 Identities=10% Similarity=0.155 Sum_probs=56.5
Q ss_pred CCCcEEEEEEeCCChhhHHHHHHH-H--HHHHHhCCCceEEEEeccc----hHhHHhhcCCCCCCCCceEEEEeCCccc-
Q 013240 269 DKRKIVLAIVEDETEEKSQKLVTT-L--KAAASANRELVFCYVGIKQ----FADFADTFEANKKSKLPKMVVWDGNENY- 340 (447)
Q Consensus 269 ~~~~~vl~~~~~~~~~~~~~~~~~-l--~~~a~~~~~~~f~~vd~~~----~~~~~~~~~i~~~~~~P~vvi~~~~~~y- 340 (447)
.++++++.|+.+ ....-+..... + .++.++++++.+..+|.++ ..++++.+++ ...|++++++.+++.
T Consensus 473 ~gK~VlVdF~A~-WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v---~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 473 KGKPVMLDLYAD-WCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNV---LGLPTILFFDAQGQEI 548 (571)
T ss_pred cCCcEEEEEECC-cCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCC---CCCCEEEEECCCCCCc
Confidence 457888777753 33333332222 1 3455556678888899864 3678889998 789999999876432
Q ss_pred --eecCCCCCCCcccchhHHHHHHHHHh
Q 013240 341 --LTVIGSESIDEEDQGSQISRFLEGYR 366 (447)
Q Consensus 341 --~~~~g~~~~~~~~~~~~i~~Fl~~~~ 366 (447)
... .+..+.+++.+++++..
T Consensus 549 ~~~r~------~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 549 PDARV------TGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred ccccc------cCCCCHHHHHHHHHHhc
Confidence 222 34456778888888753
No 300
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=85.80 E-value=4 Score=32.04 Aligned_cols=84 Identities=17% Similarity=0.260 Sum_probs=47.2
Q ss_pred CCCcEEEEEEeCCChhhHHHHHHHHH---HHHHhCC-CceEEEEeccch--------------------HhHHhhcCCCC
Q 013240 269 DKRKIVLAIVEDETEEKSQKLVTTLK---AAASANR-ELVFCYVGIKQF--------------------ADFADTFEANK 324 (447)
Q Consensus 269 ~~~~~vl~~~~~~~~~~~~~~~~~l~---~~a~~~~-~~~f~~vd~~~~--------------------~~~~~~~~i~~ 324 (447)
.+++.+++|++ ....--+.+.+.+. .+....+ ++.+..++..+. .++++.+|+
T Consensus 4 ~~k~~v~~F~~-~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v-- 80 (112)
T PF13098_consen 4 NGKPIVVVFTD-PWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV-- 80 (112)
T ss_dssp TSSEEEEEEE--TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT---
T ss_pred CCCEEEEEEEC-CCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC--
Confidence 45677777764 45555555555555 3444443 366666666532 347788888
Q ss_pred CCCCceEEEEeCCcc-ceecCCCCCCCcccchhHHHHHH
Q 013240 325 KSKLPKMVVWDGNEN-YLTVIGSESIDEEDQGSQISRFL 362 (447)
Q Consensus 325 ~~~~P~vvi~~~~~~-y~~~~g~~~~~~~~~~~~i~~Fl 362 (447)
...|++++++.+++ .....| ..+.+++.++|
T Consensus 81 -~gtPt~~~~d~~G~~v~~~~G------~~~~~~l~~~L 112 (112)
T PF13098_consen 81 -NGTPTIVFLDKDGKIVYRIPG------YLSPEELLKML 112 (112)
T ss_dssp --SSSEEEECTTTSCEEEEEES------S--HHHHHHHH
T ss_pred -CccCEEEEEcCCCCEEEEecC------CCCHHHHHhhC
Confidence 77999999997543 333433 34455666543
No 301
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=85.64 E-value=5.9 Score=31.77 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=44.0
Q ss_pred hhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC-CceEEEEeccchH-hHHhhcCCCCCCCCceEEEEeCCc
Q 013240 261 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR-ELVFCYVGIKQFA-DFADTFEANKKSKLPKMVVWDGNE 338 (447)
Q Consensus 261 ~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~-~~~f~~vd~~~~~-~~~~~~~i~~~~~~P~vvi~~~~~ 338 (447)
..+......++|+++.|+. .....-+.+...+.+.+.... ...|+.++.+..+ .....+++ .+...|++++++.++
T Consensus 10 ~al~~A~~~~kpVlV~F~a-~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~-~g~~vPt~~f~~~~G 87 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHK-TWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSP-DGGYIPRILFLDPSG 87 (117)
T ss_pred HHHHHHHHcCCcEEEEEeC-CcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhccc-CCCccceEEEECCCC
Confidence 3445555667888887775 344444444445555444321 2456666665443 34456777 333599999998754
No 302
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=85.57 E-value=9 Score=30.00 Aligned_cols=77 Identities=9% Similarity=0.277 Sum_probs=48.1
Q ss_pred ChhhHHhhhcC--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccch----HhHHhhcCCCCCCCCceE
Q 013240 259 NQDTLNLLKDD--KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQF----ADFADTFEANKKSKLPKM 331 (447)
Q Consensus 259 ~~~~~~~~~~~--~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~----~~~~~~~~i~~~~~~P~v 331 (447)
+.+.++.+... .+|++++= ......-....++.|.+.+....+ +.+.++|.-++ ...++.||+ .-..|++
T Consensus 6 t~eql~~i~~~S~~~~~~iFK-HSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V--~HeSPQ~ 82 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFK-HSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGV--KHESPQV 82 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEE-E-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT------SSEE
T ss_pred CHHHHHHHHHhcccCcEEEEE-eCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCC--CcCCCcE
Confidence 44566665543 45655533 334566777778888888888876 99999999776 446678899 3778999
Q ss_pred EEEeCCc
Q 013240 332 VVWDGNE 338 (447)
Q Consensus 332 vi~~~~~ 338 (447)
+++..++
T Consensus 83 ili~~g~ 89 (105)
T PF11009_consen 83 ILIKNGK 89 (105)
T ss_dssp EEEETTE
T ss_pred EEEECCE
Confidence 9988764
No 303
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=85.40 E-value=4.3 Score=29.35 Aligned_cols=61 Identities=25% Similarity=0.249 Sum_probs=47.2
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEe
Q 013240 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFM 125 (447)
Q Consensus 63 ~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~ 125 (447)
.|-.|-+..-+.+++......++-++.. +..+.+-.||..+++++++.++|-..||++-..
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l--~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~ 63 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELL--GGPYELEVIDVLKQPQLAEEDKIVATPTLVKVL 63 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhc--CCcEEEEEEEcccCHhHHhhCCEEEechhhhcC
Confidence 3455556655777777777777776654 346999999999999999999999999987543
No 304
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=85.11 E-value=6.7 Score=32.10 Aligned_cols=80 Identities=14% Similarity=0.246 Sum_probs=48.8
Q ss_pred cChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCceEEEEeccchHhHHhhcCCCCCCCCceEEEEeCC
Q 013240 258 INQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 337 (447)
Q Consensus 258 l~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~~ 337 (447)
++.+....+....++.-++++...-..+.......|.++|...+++.+-++.-++.+++.+.+.-+.....|++++++.+
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence 44555555555556655555555677788888999999999998877777766667777776533345779999999875
No 305
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=83.85 E-value=14 Score=29.27 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=48.6
Q ss_pred hhhcCCCcEEEEEEeCCChhhHHHHH-HHHH--HHHHhCC-CceEEEEecc--chHhHHhhcCCCCCCCCceEEEEeC-C
Q 013240 265 LLKDDKRKIVLAIVEDETEEKSQKLV-TTLK--AAASANR-ELVFCYVGIK--QFADFADTFEANKKSKLPKMVVWDG-N 337 (447)
Q Consensus 265 ~~~~~~~~~vl~~~~~~~~~~~~~~~-~~l~--~~a~~~~-~~~f~~vd~~--~~~~~~~~~~i~~~~~~P~vvi~~~-~ 337 (447)
.....++++++.++.+. ....+.+. +.|. .+.+... ++.+.-+|.. +..++++.+++ ..+|+++++++ +
T Consensus 12 ~Ak~~~K~llv~~~~~~-c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~---~~~P~~~~i~~~~ 87 (114)
T cd02958 12 EAKSEKKWLLVYLQSED-EFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKV---DKYPHIAIIDPRT 87 (114)
T ss_pred HHHhhCceEEEEEecCC-cchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCc---cCCCeEEEEeCcc
Confidence 33445677777776543 22222221 1111 1122221 3444445654 45678888887 78999999998 4
Q ss_pred c-cceecCCCCCCCcccchhHHHHHHHHHh
Q 013240 338 E-NYLTVIGSESIDEEDQGSQISRFLEGYR 366 (447)
Q Consensus 338 ~-~y~~~~g~~~~~~~~~~~~i~~Fl~~~~ 366 (447)
+ .-.... +..+++.+.+-++...
T Consensus 88 g~~l~~~~------G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 88 GEVLKVWS------GNITPEDLLSQLIEFL 111 (114)
T ss_pred CcEeEEEc------CCCCHHHHHHHHHHHH
Confidence 3 233333 3444556666665544
No 306
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.80 E-value=39 Score=31.86 Aligned_cols=116 Identities=13% Similarity=0.193 Sum_probs=66.0
Q ss_pred CCCCccccChhhHHhhhc-CCCcE-EEEEEeCC----ChhhHHHHHHHHHHHHHhCC---------CceEEEEeccchHh
Q 013240 251 FLPLSVPINQDTLNLLKD-DKRKI-VLAIVEDE----TEEKSQKLVTTLKAAASANR---------ELVFCYVGIKQFAD 315 (447)
Q Consensus 251 ~~p~~~~l~~~~~~~~~~-~~~~~-vl~~~~~~----~~~~~~~~~~~l~~~a~~~~---------~~~f~~vd~~~~~~ 315 (447)
....+..+|.+.+..+.. .+++. ++.+++.. ...-..+..+++.-+|..++ ++-|+.||.++-++
T Consensus 38 s~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~ 117 (331)
T KOG2603|consen 38 SESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ 117 (331)
T ss_pred CCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence 334455666666665432 33332 33333211 11112333356666665422 26799999999999
Q ss_pred HHhhcCCCCCCCCceEEEEeCCc-cceecCCCCCCC-cccchhHHHHHHHHHhcCcc
Q 013240 316 FADTFEANKKSKLPKMVVWDGNE-NYLTVIGSESID-EEDQGSQISRFLEGYREGRT 370 (447)
Q Consensus 316 ~~~~~~i~~~~~~P~vvi~~~~~-~y~~~~g~~~~~-~~~~~~~i~~Fl~~~~~gkl 370 (447)
.-+.|++ ...|.++++.+.. ... -.+..+.. -....|++.+|+++.-+=+.
T Consensus 118 ~Fq~l~l---n~~P~l~~f~P~~~n~~-~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v 170 (331)
T KOG2603|consen 118 VFQQLNL---NNVPHLVLFSPAKGNKK-RSDQMDQQDLGFEAEQIAQFVADRTKVNV 170 (331)
T ss_pred HHHHhcc---cCCCeEEEeCCCccccc-cCccchhhhcchhHHHHHHHHHHhhhhee
Confidence 9999999 6799999998742 111 11111111 11237899999988755443
No 307
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=83.60 E-value=12 Score=34.93 Aligned_cols=89 Identities=9% Similarity=-0.008 Sum_probs=58.8
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccc---------hHhHHhhcCCCCCCCCceEEEEeC-Cc
Q 013240 270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ---------FADFADTFEANKKSKLPKMVVWDG-NE 338 (447)
Q Consensus 270 ~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~---------~~~~~~~~~i~~~~~~P~vvi~~~-~~ 338 (447)
+++.++.|+. .....-......|+.+++++.- +..+-+|+.. ....++.+|+ ...|++++++. ++
T Consensus 166 ~k~~Lv~F~A-swCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV---~~vPtl~Lv~~~~~ 241 (271)
T TIGR02740 166 KKSGLFFFFK-SDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKI---RTVPAVFLADPDPN 241 (271)
T ss_pred CCeEEEEEEC-CCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCC---CcCCeEEEEECCCC
Confidence 3566666664 4566667778899999998862 4444445432 2356778888 78999999998 45
Q ss_pred cceecCCCCCCCcccchhHHHHHHHHHhc
Q 013240 339 NYLTVIGSESIDEEDQGSQISRFLEGYRE 367 (447)
Q Consensus 339 ~y~~~~g~~~~~~~~~~~~i~~Fl~~~~~ 367 (447)
...... .+.++.+.|.+.+..+..
T Consensus 242 ~v~~v~-----~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 242 QFTPIG-----FGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEEE-----eCCCCHHHHHHHHHHHhc
Confidence 444332 244567788888877655
No 308
>PF13728 TraF: F plasmid transfer operon protein
Probab=82.77 E-value=9.6 Score=34.27 Aligned_cols=80 Identities=9% Similarity=0.007 Sum_probs=52.4
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEecc---------chHhHHhhcCCCCCCCCceEEEEeCCc-c
Q 013240 271 RKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIK---------QFADFADTFEANKKSKLPKMVVWDGNE-N 339 (447)
Q Consensus 271 ~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~---------~~~~~~~~~~i~~~~~~P~vvi~~~~~-~ 339 (447)
+.-+++|+ .++..-.+....+|+.++.++.= +..+-+|+. .....++.||+ ...|++++++++. .
T Consensus 121 ~~gL~~F~-~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v---~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 121 KYGLFFFY-RSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV---KVTPALFLVNPNTKK 196 (215)
T ss_pred CeEEEEEE-cCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC---CcCCEEEEEECCCCe
Confidence 33444444 35666668889999999999852 444445543 23556778888 6899999999964 6
Q ss_pred ceecCCCCCCCcccchhHHH
Q 013240 340 YLTVIGSESIDEEDQGSQIS 359 (447)
Q Consensus 340 y~~~~g~~~~~~~~~~~~i~ 359 (447)
++.+. .+.++.++|.
T Consensus 197 ~~pv~-----~G~~s~~~L~ 211 (215)
T PF13728_consen 197 WYPVS-----QGFMSLDELE 211 (215)
T ss_pred EEEEe-----eecCCHHHHH
Confidence 66654 3444444543
No 309
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=82.39 E-value=8.7 Score=39.39 Aligned_cols=96 Identities=15% Similarity=0.165 Sum_probs=63.7
Q ss_pred eecCChhHHHHHHHhcCCcccEEEeecCChh-HHHHHHH----------HhhhhhHhH--Hh--hccchhhhhhcCCCCC
Q 013240 154 SILNSDAEVSDFVENAGTFFPLFIGFGLDES-VMSNLAL----------KYKKKAWFA--VA--KDFSEDTMVLYDFDKV 218 (447)
Q Consensus 154 ~~i~s~~~~~~~l~~~~~~~~~vi~f~~~~~-~~~~~a~----------~~~~~~~f~--~~--~~~~~~~~~~~~i~~~ 218 (447)
..+.+..++++.+.++.. +|+++.|+.+.- .+++..+ +..+..... .. ...+.++.++||+-+.
T Consensus 457 q~~s~~~~L~~~la~~~~-~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~ 535 (569)
T COG4232 457 QPISPLAELDQALAEAKA-KPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGV 535 (569)
T ss_pred hccCCHHHHHHHHHhCCC-CcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence 345556688899988765 589999876532 2222211 111111000 00 1124567889999999
Q ss_pred CeEEEEcCCCCCcccccCCCChHHHHHHHHhh
Q 013240 219 PALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 250 (447)
Q Consensus 219 P~l~~~~~~~~~~~~~~g~~~~~~i~~fI~~~ 250 (447)
|++++|.++.++.....|.++.+.+.+++++.
T Consensus 536 P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 536 PTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 99999998877777799999999999999865
No 310
>smart00594 UAS UAS domain.
Probab=81.73 E-value=16 Score=29.37 Aligned_cols=88 Identities=15% Similarity=0.218 Sum_probs=47.6
Q ss_pred hhcCCCcEEEEEEeCCChhhHHHHH------HHHHHHHHhCCCceEEEEecc--chHhHHhhcCCCCCCCCceEEEEeCC
Q 013240 266 LKDDKRKIVLAIVEDETEEKSQKLV------TTLKAAASANRELVFCYVGIK--QFADFADTFEANKKSKLPKMVVWDGN 337 (447)
Q Consensus 266 ~~~~~~~~vl~~~~~~~~~~~~~~~------~~l~~~a~~~~~~~f~~vd~~--~~~~~~~~~~i~~~~~~P~vvi~~~~ 337 (447)
....++++++.++.+. ......+. +.+.+..++ ++.+.-+|.. +..+++..+++ .++|++++++++
T Consensus 23 Ak~~~K~~lv~~~~~~-c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~eg~~l~~~~~~---~~~P~~~~l~~~ 96 (122)
T smart00594 23 ASRQRRLLWLYLHSQD-SPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSEGQRVSQFYKL---DSFPYVAIVDPR 96 (122)
T ss_pred HHhhcCCEEEEEeCCC-CchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChhHHHHHHhcCc---CCCCEEEEEecC
Confidence 3445567777776542 22222221 222222222 3445445553 44667888888 689999999986
Q ss_pred c---cceecCCCCCCCcccchhHHHHHH
Q 013240 338 E---NYLTVIGSESIDEEDQGSQISRFL 362 (447)
Q Consensus 338 ~---~y~~~~g~~~~~~~~~~~~i~~Fl 362 (447)
+ .+.... .+++..+.+.+.+++
T Consensus 97 ~g~~~~~~~~---~~~G~~~~~~l~~~l 121 (122)
T smart00594 97 TGQRVIEWVG---VVEGEISPEELMTFL 121 (122)
T ss_pred CCceeEEEec---cccCCCCHHHHHHhh
Confidence 3 222211 134566677777665
No 311
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.54 E-value=4 Score=36.12 Aligned_cols=63 Identities=17% Similarity=0.313 Sum_probs=47.1
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhCCC--ceEEEEeccchHhHHhhcCCC---CCCCCceEEEEeCC
Q 013240 274 VLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEAN---KKSKLPKMVVWDGN 337 (447)
Q Consensus 274 vl~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~~i~---~~~~~P~vvi~~~~ 337 (447)
++-|+.. ...+-..+...+.+++.+|.. +.|+.||...|++....|+++ -..++|+++++...
T Consensus 148 lIeFfa~-ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~g 215 (265)
T KOG0914|consen 148 LIEFFAC-WSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKG 215 (265)
T ss_pred EEEEEee-cChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEEccc
Confidence 4445543 344445666778888888775 999999999999999999873 12568999999875
No 312
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=79.42 E-value=16 Score=37.50 Aligned_cols=45 Identities=11% Similarity=0.086 Sum_probs=31.2
Q ss_pred chHhHHhhcCCCCCCCCceEEEEeCCccc-eecCCCCCCCcccchhHHHHHHHHH
Q 013240 312 QFADFADTFEANKKSKLPKMVVWDGNENY-LTVIGSESIDEEDQGSQISRFLEGY 365 (447)
Q Consensus 312 ~~~~~~~~~~i~~~~~~P~vvi~~~~~~y-~~~~g~~~~~~~~~~~~i~~Fl~~~ 365 (447)
....+.+.|++ ..+|+.+|++.+++. ..+. +..+.+.|.++|+..
T Consensus 127 ~~~~lak~fgV---~giPTt~IIDkdGkIV~~~~------G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 127 NGGTLAQSLNI---SVYPSWAIIGKDGDVQRIVK------GSISEAQALALIRNP 172 (521)
T ss_pred ccHHHHHHcCC---CCcCeEEEEcCCCeEEEEEe------CCCCHHHHHHHHHHh
Confidence 34567778888 689999999886533 2333 345577899988843
No 313
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=79.19 E-value=15 Score=26.66 Aligned_cols=71 Identities=18% Similarity=0.130 Sum_probs=39.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccc----hhhhhhCCCccccEEEEEeCCeeEEecCCCCHH
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY----SRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAE 139 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~----~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~ 139 (447)
+..++.++|++|.+..-.+.+. + +.+-.++.... .++-+..+-..+|++..-.+|.. -....
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~-----g----i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~-----l~es~ 67 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL-----E----LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQ-----MFESA 67 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc-----C----CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeE-----EEcHH
Confidence 3456678999998775444432 2 33444555432 34444445567899854222322 12456
Q ss_pred HHHHHHHHh
Q 013240 140 LLVRYLKKF 148 (447)
Q Consensus 140 ~i~~fi~~~ 148 (447)
.|.+|+.+.
T Consensus 68 ~I~~yL~~~ 76 (77)
T cd03041 68 DIVKYLFKT 76 (77)
T ss_pred HHHHHHHHh
Confidence 777777653
No 314
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=78.70 E-value=22 Score=25.57 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=47.7
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc-chhhhhhCCCccccEEEEEeCCeeEEecCCCCHHHHHHH
Q 013240 66 DFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-YSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRY 144 (447)
Q Consensus 66 ~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~-~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~i~~f 144 (447)
+++.++|+.|++..=.+.. ++. ++.+..|+..+ ...+.+...-..+|++. .+|..+. ....|.+|
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~-----~~i--~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~-----dS~~I~~y 66 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEE-----KGI--PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT-----DSAAIIEY 66 (75)
T ss_dssp EEEETTSHHHHHHHHHHHH-----HTE--EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE-----SHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHH-----cCC--eEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe-----CHHHHHHH
Confidence 3678899999887543332 332 25555565544 35667777788899997 4565443 57788899
Q ss_pred HHHhcCC
Q 013240 145 LKKFVAP 151 (447)
Q Consensus 145 i~~~~~~ 151 (447)
+.+..+.
T Consensus 67 L~~~~~~ 73 (75)
T PF13417_consen 67 LEERYPG 73 (75)
T ss_dssp HHHHSTS
T ss_pred HHHHcCC
Confidence 8887654
No 315
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=78.67 E-value=17 Score=26.17 Aligned_cols=71 Identities=15% Similarity=0.275 Sum_probs=40.3
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCc--cchhhhhhCCCccccEEEEEeC--CeeEEecCCCCHH
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD--KYSRLASKQEIDAFPTLKIFMH--GIPTEYYGPRKAE 139 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~--~~~~l~~~~~i~~~Ptl~~~~~--g~~~~y~g~~~~~ 139 (447)
+..|+.+.|+.|++..-.+.+ ++ +.+-.++.+ ...++ +..+-..+|++..=.. |.. -....
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~-----~g----i~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~-----l~eS~ 66 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDY-----HG----IPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQ-----LVDSS 66 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHH-----CC----CceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccE-----EEcHH
Confidence 456788999999988644433 22 333333432 22233 3345567898875321 222 23567
Q ss_pred HHHHHHHHhc
Q 013240 140 LLVRYLKKFV 149 (447)
Q Consensus 140 ~i~~fi~~~~ 149 (447)
.|.+|+.+.+
T Consensus 67 ~I~~yL~~~~ 76 (77)
T cd03040 67 VIISTLKTYL 76 (77)
T ss_pred HHHHHHHHHc
Confidence 7888887765
No 316
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=77.90 E-value=23 Score=26.55 Aligned_cols=23 Identities=13% Similarity=0.403 Sum_probs=14.6
Q ss_pred hHhHHhhcCCCCCCCCceEEEEeCCc
Q 013240 313 FADFADTFEANKKSKLPKMVVWDGNE 338 (447)
Q Consensus 313 ~~~~~~~~~i~~~~~~P~vvi~~~~~ 338 (447)
...+.+.+++ ...|++++++.++
T Consensus 71 ~~~l~~~~~i---~~iP~~~lld~~G 93 (95)
T PF13905_consen 71 NSELLKKYGI---NGIPTLVLLDPDG 93 (95)
T ss_dssp HHHHHHHTT----TSSSEEEEEETTS
T ss_pred HHHHHHHCCC---CcCCEEEEECCCC
Confidence 3455566666 5678888888754
No 317
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=77.57 E-value=33 Score=30.16 Aligned_cols=116 Identities=13% Similarity=0.139 Sum_probs=74.2
Q ss_pred HHHHHHHhhCCCCccccChhhH-HhhhcC--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCceEEEEeccchHhHHh
Q 013240 242 FLEEFIKQNFLPLSVPINQDTL-NLLKDD--KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFAD 318 (447)
Q Consensus 242 ~i~~fI~~~~~p~~~~l~~~~~-~~~~~~--~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~ 318 (447)
+++.-...++|..|.+++...+ .+.... +.++|+.++.+ ......-+...|..+|..|+.+.|+-+=+.+ -..
T Consensus 80 E~r~~~~k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~-gvp~c~Ll~~~l~~la~kfp~iKFVki~at~---cIp 155 (240)
T KOG3170|consen 80 EWRATAEKAKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQ-GVPLCALLSHHLQSLACKFPQIKFVKIPATT---CIP 155 (240)
T ss_pred HHHHHHHHhcccceeeccchHHHHHHHhccCccEEEEEeecc-ccHHHHHHHHHHHHHhhcCCcceEEeccccc---ccC
Confidence 4555566778888888876444 444433 34566555543 4555566778899999999999998775532 111
Q ss_pred hcCCCCCCCCceEEEEeCCccceecCCCCCCC-cccchhHHHHHHHH
Q 013240 319 TFEANKKSKLPKMVVWDGNENYLTVIGSESID-EEDQGSQISRFLEG 364 (447)
Q Consensus 319 ~~~i~~~~~~P~vvi~~~~~~y~~~~g~~~~~-~~~~~~~i~~Fl~~ 364 (447)
.| ....+|++.|+........+.|...+. .+.+.+.+..|+-.
T Consensus 156 NY---Pe~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 156 NY---PESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred CC---cccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 12 346689999999864444444544443 45677888888744
No 318
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=76.03 E-value=21 Score=33.05 Aligned_cols=85 Identities=9% Similarity=0.021 Sum_probs=56.0
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccch---------HhHHhhcCCCCCCCCceEEEEeCC-ccc
Q 013240 272 KIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQF---------ADFADTFEANKKSKLPKMVVWDGN-ENY 340 (447)
Q Consensus 272 ~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~---------~~~~~~~~i~~~~~~P~vvi~~~~-~~y 340 (447)
.-+++|+. +++.-.+++..+++.++.+|.= +..+-+|+.-. ...++.+|+ ...|++++++.+ +++
T Consensus 152 ~gL~fFy~-~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v---~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 152 YGLFFFYR-GKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGV---KYFPALYLVNPKSQKM 227 (256)
T ss_pred eeEEEEEC-CCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCC---ccCceEEEEECCCCcE
Confidence 34444543 5666668889999999999873 55566676532 335667888 679999999996 667
Q ss_pred eecCCCCCCCcccchhHHHHHHHHH
Q 013240 341 LTVIGSESIDEEDQGSQISRFLEGY 365 (447)
Q Consensus 341 ~~~~g~~~~~~~~~~~~i~~Fl~~~ 365 (447)
+... .+.++.++|.+=+..+
T Consensus 228 ~pv~-----~G~iS~deL~~Ri~~v 247 (256)
T TIGR02739 228 SPLA-----YGFISQDELKERILNV 247 (256)
T ss_pred EEEe-----eccCCHHHHHHHHHHH
Confidence 6653 3455555654433333
No 319
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=76.03 E-value=14 Score=30.31 Aligned_cols=74 Identities=24% Similarity=0.346 Sum_probs=45.0
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCcc----ccEEEEEeCCeeEEecCCCC
Q 013240 62 YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA----FPTLKIFMHGIPTEYYGPRK 137 (447)
Q Consensus 62 ~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~----~Ptl~~~~~g~~~~y~g~~~ 137 (447)
.-++.+++|.|+=|..+....+ ..+ +.+..+..++-..+-+++||.. --|.++ +|..+ .|-.-
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk-------~~G--f~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy~v--EGHVP 92 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMK-------ANG--FEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGYYV--EGHVP 92 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHH-------hCC--cEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCEEE--eccCC
Confidence 3478899999999976644433 222 6677777777777777888762 233322 33222 45555
Q ss_pred HHHHHHHHHHh
Q 013240 138 AELLVRYLKKF 148 (447)
Q Consensus 138 ~~~i~~fi~~~ 148 (447)
+++|..++.+.
T Consensus 93 a~aI~~ll~~~ 103 (149)
T COG3019 93 AEAIARLLAEK 103 (149)
T ss_pred HHHHHHHHhCC
Confidence 56665555443
No 320
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=75.34 E-value=6.4 Score=41.07 Aligned_cols=86 Identities=24% Similarity=0.275 Sum_probs=64.3
Q ss_pred CCCeEEe--ChhhHHHhHccCCeEEEEEECCCChhhhhhhHH-H--HHHHHHhhcCCCCeEEEEEeCccchhhhhhCC--
Q 013240 42 DGKVIEL--DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQ-L--DEAAPILAKLKEPIVIAKVDADKYSRLASKQE-- 114 (447)
Q Consensus 42 ~~~v~~l--~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~-~--~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~-- 114 (447)
++.|..- .++.|..+-.+++|+|+-.-..||.-|+-++.+ | .++|..++.. +.-++||-++-|++-+.|.
T Consensus 23 ~nPV~W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~---FV~IKVDREERPDvD~~Ym~~ 99 (667)
T COG1331 23 HNPVDWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN---FVPVKVDREERPDVDSLYMNA 99 (667)
T ss_pred CCCccccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC---ceeeeEChhhccCHHHHHHHH
Confidence 3444443 678899999999999999999999999876654 3 3678777664 7788999998888766653
Q ss_pred ------CccccEEEEEe-CCeeE
Q 013240 115 ------IDAFPTLKIFM-HGIPT 130 (447)
Q Consensus 115 ------i~~~Ptl~~~~-~g~~~ 130 (447)
--|.|--++.. +|+|.
T Consensus 100 ~q~~tG~GGWPLtVfLTPd~kPF 122 (667)
T COG1331 100 SQAITGQGGWPLTVFLTPDGKPF 122 (667)
T ss_pred HHHhccCCCCceeEEECCCCcee
Confidence 44788766654 46665
No 321
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=74.35 E-value=11 Score=29.92 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeC
Q 013240 77 RLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH 126 (447)
Q Consensus 77 ~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~ 126 (447)
.+.+.+..+.+.+.+.... .+..-+|.+.++|+|+.+|++++-.+
T Consensus 36 ~~~~t~~~~~~l~~~~~~~-----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC-----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC-----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 6777777777766554322 23344699999999999999999887
No 322
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=73.76 E-value=13 Score=34.18 Aligned_cols=41 Identities=10% Similarity=-0.012 Sum_probs=29.1
Q ss_pred CeEEeChhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHH
Q 013240 44 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAP 87 (447)
Q Consensus 44 ~v~~l~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~ 87 (447)
....++..+ +...+++.++..-+.||+.|...+-.+--+-.
T Consensus 45 ~~~kvsn~d---~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALs 85 (249)
T PF06053_consen 45 NFFKVSNQD---LAPNGKPEVIFIGWEGCPYCAAESWALYIALS 85 (249)
T ss_pred ceeeecCcc---cCCCCeeEEEEEecccCccchhhHHHHHHHHH
Confidence 556665544 44678999999999999999776555444433
No 323
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=73.49 E-value=16 Score=25.95 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=32.6
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc-chhhhhhCCCccccEEEE
Q 013240 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-YSRLASKQEIDAFPTLKI 123 (447)
Q Consensus 65 V~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~-~~~l~~~~~i~~~Ptl~~ 123 (447)
+.++.+||++|.+..-.+.+ ++ -++.+..||... ..++.+......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~-----~g--l~~e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLL-----AG--ITVELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHH-----cC--CCcEEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 45778999999887544443 22 224455555543 345656667778899853
No 324
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=73.19 E-value=8.7 Score=32.22 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=34.0
Q ss_pred EEEEECC------CChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhh----hhCCC----ccccEEEE
Q 013240 64 LVDFYAP------WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA----SKQEI----DAFPTLKI 123 (447)
Q Consensus 64 lV~f~~~------~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~----~~~~i----~~~Ptl~~ 123 (447)
+|.++++ +|++|++....++.. + |.+-.+|.+.++++. +..+- ..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-------~--V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-------R--VKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-------C--CcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 3455566 899998887776642 2 777888887765443 33343 57888764
No 325
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=72.77 E-value=28 Score=32.06 Aligned_cols=89 Identities=6% Similarity=-0.054 Sum_probs=59.2
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHh---------HHhhcCCCCCCCCceEEEEeCC-ccc
Q 013240 272 KIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFAD---------FADTFEANKKSKLPKMVVWDGN-ENY 340 (447)
Q Consensus 272 ~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~---------~~~~~~i~~~~~~P~vvi~~~~-~~y 340 (447)
.-+++|+ .++..--+++..+++.++.++.= +.-+-+|+.-.+. .++.+|+ ...|++++++.+ +++
T Consensus 145 ~GL~fFy-~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v---~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 145 YGLMFFY-RGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGV---KYFPALMLVDPKSGSV 220 (248)
T ss_pred ceEEEEE-CCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCC---cccceEEEEECCCCcE
Confidence 4444455 35666678889999999999874 5566677743322 3346777 668999999996 467
Q ss_pred eecCCCCCCCcccchhHHHHHHHHHhcCc
Q 013240 341 LTVIGSESIDEEDQGSQISRFLEGYREGR 369 (447)
Q Consensus 341 ~~~~g~~~~~~~~~~~~i~~Fl~~~~~gk 369 (447)
++.. .+.++.++|.+=+..+..|.
T Consensus 221 ~pv~-----~G~iS~deL~~Ri~~v~t~~ 244 (248)
T PRK13703 221 RPLS-----YGFITQDDLAKRFLNVSTDF 244 (248)
T ss_pred EEEe-----eccCCHHHHHHHHHHHHhcc
Confidence 6653 45566677766555555543
No 326
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=72.75 E-value=4.5 Score=31.65 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=22.2
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc
Q 013240 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK 105 (447)
Q Consensus 65 V~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~ 105 (447)
..|+.++|+.|++....+++. + +.+-.+|..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~----i~~~~idi~~ 33 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-----G----IEYEFIDYLK 33 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----C----CCcEEEeecc
Confidence 467899999999987666552 2 5566666543
No 327
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=72.60 E-value=19 Score=27.13 Aligned_cols=75 Identities=20% Similarity=0.161 Sum_probs=54.4
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCCeeEEecCCCC
Q 013240 61 DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRK 137 (447)
Q Consensus 61 ~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~ 137 (447)
.+.|=.|.+..-+.+++.-....++-++... +.+.+-.||..++|++++.+.|-.+||++--.++-..+.-|..+
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~--g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~P~rriiGdls 77 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQ--GVYALKVIDVLKNPQLAEEDKILATPTLSKILPPPVRKIIGDLS 77 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcC--CceEEEEEEcccCHhHHhHCCEEEecHHhhcCCCCcceeecccc
Confidence 3455566677777788887777777665433 34889999999999999999999999988554443334555543
No 328
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=72.40 E-value=24 Score=24.93 Aligned_cols=68 Identities=12% Similarity=0.155 Sum_probs=34.4
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCCeeEEecCCCCHHHHHHHH
Q 013240 66 DFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYL 145 (447)
Q Consensus 66 ~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~i~~fi 145 (447)
.++.++|++|++..-.+... +. ......++-......-+..+-..+|.+.. .+|..+ .....|.+|+
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~-----gl--~~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~l-----~es~aI~~yL 69 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK-----NI--PVEQIILQNDDEATPIRMIGAKQVPILEK-DDGSFM-----AESLDIVAFI 69 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc-----CC--CeEEEECCCCchHHHHHhcCCCccCEEEe-CCCeEe-----ehHHHHHHHH
Confidence 56788999999876555442 21 23333344322222223344456788743 324321 2345566655
Q ss_pred H
Q 013240 146 K 146 (447)
Q Consensus 146 ~ 146 (447)
.
T Consensus 70 ~ 70 (71)
T cd03037 70 D 70 (71)
T ss_pred h
Confidence 3
No 329
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=72.09 E-value=81 Score=28.99 Aligned_cols=135 Identities=19% Similarity=0.306 Sum_probs=75.3
Q ss_pred CCeEEEEEECCCCh-hhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCCeeEEecCCCCH
Q 013240 60 FDYILVDFYAPWCG-HCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKA 138 (447)
Q Consensus 60 ~~~~lV~f~~~~C~-~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~ 138 (447)
.+.+|++|-=+.|+ -|-.-.....++..+++. +.++.-+|-++-..+ +|
T Consensus 139 Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~--------------------~~~~~~~PlFIsvDP--------eR-- 188 (280)
T KOG2792|consen 139 GKWSLIYFGFTHCPDICPDELEKMSAVVDEIEA--------------------KPGLPPVPLFISVDP--------ER-- 188 (280)
T ss_pred cceEEEEecccCCCCcChHHHHHHHHHHHHHhc--------------------cCCCCccceEEEeCc--------cc--
Confidence 47889999777776 675554444444444433 234444455444322 11
Q ss_pred HHHHHHHHHhcCCCceecCChhHHHHHHHhcCCcccEEEeecCChhHHHHHHHHhhhhhHhHHhhccchhhhhhcCCCCC
Q 013240 139 ELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKV 218 (447)
Q Consensus 139 ~~i~~fi~~~~~~~v~~i~s~~~~~~~l~~~~~~~~~vi~f~~~~~~~~~~a~~~~~~~~f~~~~~~~~~~~~~~~i~~~ 218 (447)
++.+.+.+++++-. |.++|++-..+..+.+|.+|+-+ |.-. .++.-+.|=++..
T Consensus 189 ------------------D~~~~~~eY~~eF~---pkllGLTGT~eqvk~vak~yRVY--fs~g---p~d~~~DYlVDHS 242 (280)
T KOG2792|consen 189 ------------------DSVEVVAEYVSEFH---PKLLGLTGTTEQVKQVAKKYRVY--FSTG---PKDEDQDYLVDHS 242 (280)
T ss_pred ------------------CCHHHHHHHHHhcC---hhhhcccCCHHHHHHHHHHhEEe--eccC---CCCCCCCeeeeee
Confidence 13445556665543 57778777777788888887633 2221 1222344555543
Q ss_pred CeEEEEcCCCCCcccccC-CCChHHHHHHHHhhC
Q 013240 219 PALVALQPSYNEHNIFYG-PFDEEFLEEFIKQNF 251 (447)
Q Consensus 219 P~l~~~~~~~~~~~~~~g-~~~~~~i~~fI~~~~ 251 (447)
=.+.++.|. .+...|.| +.+.+++.+=|..+.
T Consensus 243 i~mYLidPe-g~Fvd~~GrN~~~~~~~~~I~~~v 275 (280)
T KOG2792|consen 243 IFMYLIDPE-GEFVDYYGRNYDADELADSILKHV 275 (280)
T ss_pred EEEEEECCC-cceehhhcccCCHHHHHHHHHHHH
Confidence 334444443 34555666 678888888777664
No 330
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=71.74 E-value=43 Score=25.64 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=44.8
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCCe--eEEecCCC
Q 013240 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGI--PTEYYGPR 136 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g~--~~~y~g~~ 136 (447)
+++..++.|..+. ..|..+....+++|+. .++|.+-..+... ..|++.+..+|+ .++|.|--
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~l----SdkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP 81 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASL----SDKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIP 81 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHh----CCceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecC
Confidence 3456677777665 8888887777777653 3446554333211 479999988873 37788865
Q ss_pred CHHHHHHHH
Q 013240 137 KAELLVRYL 145 (447)
Q Consensus 137 ~~~~i~~fi 145 (447)
.-.++..|+
T Consensus 82 ~GhEf~Sli 90 (94)
T cd02974 82 MGHEFTSLV 90 (94)
T ss_pred CchhHHHHH
Confidence 555555544
No 331
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=71.33 E-value=29 Score=27.98 Aligned_cols=23 Identities=17% Similarity=0.512 Sum_probs=17.5
Q ss_pred hHHhhcCCCCCCCCceEEEEeCCccc
Q 013240 315 DFADTFEANKKSKLPKMVVWDGNENY 340 (447)
Q Consensus 315 ~~~~~~~i~~~~~~P~vvi~~~~~~y 340 (447)
.+++.+|+ ...|++++++.+++.
T Consensus 90 ~~~~~~~v---~~~P~~~lid~~G~i 112 (131)
T cd03009 90 RLNRTFKI---EGIPTLIILDADGEV 112 (131)
T ss_pred HHHHHcCC---CCCCEEEEECCCCCE
Confidence 45567787 678999999987643
No 332
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=70.77 E-value=55 Score=26.47 Aligned_cols=99 Identities=15% Similarity=0.248 Sum_probs=59.8
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHhHHhhcCCCCCCCCceEEEEeCCccceecCCCCCC
Q 013240 271 RKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESI 349 (447)
Q Consensus 271 ~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~~~~y~~~~g~~~~ 349 (447)
..+|++=|.+..++.--+.-++|.++|.+-++ .....+|.++-++|.+.+++ +.-|+++.+-.++....--|..+-
T Consensus 23 ~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l---~~p~tvmfFfn~kHmkiD~gtgdn 99 (142)
T KOG3414|consen 23 ERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYEL---YDPPTVMFFFNNKHMKIDLGTGDN 99 (142)
T ss_pred ceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcc---cCCceEEEEEcCceEEEeeCCCCC
Confidence 34444445544555555566788899998888 44555788888999999999 566766555544323222221111
Q ss_pred C----cccchhHHHHHHHHHhcCcccc
Q 013240 350 D----EEDQGSQISRFLEGYREGRTEQ 372 (447)
Q Consensus 350 ~----~~~~~~~i~~Fl~~~~~gkl~~ 372 (447)
+ .--+.+.+.+.++-+..|-.+.
T Consensus 100 ~Kin~~~~~kq~~Idiie~iyRga~KG 126 (142)
T KOG3414|consen 100 NKINFAFEDKQEFIDIIETIYRGARKG 126 (142)
T ss_pred ceEEEEeccHHHHHHHHHHHHHhhhcC
Confidence 1 0124566777777777765444
No 333
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=70.75 E-value=17 Score=29.78 Aligned_cols=63 Identities=10% Similarity=0.135 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCCe------------eEEecCCCCHHHHHHHH
Q 013240 78 LAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGI------------PTEYYGPRKAELLVRYL 145 (447)
Q Consensus 78 ~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g~------------~~~y~g~~~~~~i~~fi 145 (447)
+.+....+.+..... .. .+..-+|.+.++|+|+.+|++++..++. ...-.|..+.+.-.+.+
T Consensus 38 ~~~T~~~i~~L~~~~-~~-----~~v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~i 111 (130)
T TIGR02742 38 FKATATRIQSLIKDG-GK-----SGVQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKM 111 (130)
T ss_pred HHHHHHHHHHHHhcC-CC-----CcEEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHH
Confidence 445555555444332 22 2333469999999999999999998774 11235666655555444
Q ss_pred H
Q 013240 146 K 146 (447)
Q Consensus 146 ~ 146 (447)
.
T Consensus 112 a 112 (130)
T TIGR02742 112 A 112 (130)
T ss_pred H
Confidence 4
No 334
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=70.74 E-value=5.9 Score=31.10 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=15.8
Q ss_pred EEEECCCChhhhhhhHHHHH
Q 013240 65 VDFYAPWCGHCKRLAPQLDE 84 (447)
Q Consensus 65 V~f~~~~C~~C~~~~p~~~~ 84 (447)
..|+.|+|+.|++....+++
T Consensus 2 ~iy~~~~C~~crka~~~L~~ 21 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA 21 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 46789999999998666554
No 335
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=70.33 E-value=36 Score=33.40 Aligned_cols=90 Identities=14% Similarity=0.125 Sum_probs=63.0
Q ss_pred ccCCeEEEEEECCCChhhhhhh-HHHH-HHHHHhhcCCCCeEEEEEeCc--cchhhhhhCCCccccEEEEEeC-CeeEE-
Q 013240 58 SSFDYILVDFYAPWCGHCKRLA-PQLD-EAAPILAKLKEPIVIAKVDAD--KYSRLASKQEIDAFPTLKIFMH-GIPTE- 131 (447)
Q Consensus 58 ~~~~~~lV~f~~~~C~~C~~~~-p~~~-~~a~~l~~~~~~v~~~~Vd~~--~~~~l~~~~~i~~~Ptl~~~~~-g~~~~- 131 (447)
+.++-+||.|-+-.......+. -.|. ....... ...+...+|+.. ...++..-|.+..+|+++++.. |.+.+
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~l--s~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLev 93 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSL--SKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEV 93 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhh--hcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEE
Confidence 4567888888887777777776 2344 3333222 223666666653 3466777789999999999854 88887
Q ss_pred ecCCCCHHHHHHHHHHhc
Q 013240 132 YYGPRKAELLVRYLKKFV 149 (447)
Q Consensus 132 y~g~~~~~~i~~fi~~~~ 149 (447)
-.|..++++|..-|.+..
T Consensus 94 itg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 94 ITGFVTADELASSIEKVW 111 (506)
T ss_pred eeccccHHHHHHHHHHHH
Confidence 789899999988877754
No 336
>PRK09301 circadian clock protein KaiB; Provisional
Probab=69.73 E-value=22 Score=27.68 Aligned_cols=75 Identities=23% Similarity=0.170 Sum_probs=55.5
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCCeeEEecCCCC
Q 013240 61 DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRK 137 (447)
Q Consensus 61 ~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~ 137 (447)
.+.|=.|.+..-+..++......++-+.... +.+.+-.||..++|++++.++|-.+||++--.++-..+.-|..+
T Consensus 6 ~~~LrLyVag~tp~S~~ai~nL~~icE~~l~--g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P~rriiGDls 80 (103)
T PRK09301 6 TYILKLYVAGNTPNSVRALKTLKNILETEFK--GVYALKVIDVLKNPQLAEEDKILATPTLAKILPPPVRKIIGDLS 80 (103)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcC--CceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCCcceeecccc
Confidence 4666677787777888887888877665433 34889999999999999999999999987554443334555543
No 337
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=69.09 E-value=6.6 Score=31.13 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=22.9
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccc
Q 013240 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY 106 (447)
Q Consensus 65 V~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~ 106 (447)
..|+.++|+.|++....+++ ++ +.+-.+|..++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~~----i~~~~idi~~~ 34 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-----HG----VDYTAIDIVEE 34 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-----cC----CceEEecccCC
Confidence 46789999999998766654 12 56666776544
No 338
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=68.69 E-value=3.1 Score=36.16 Aligned_cols=35 Identities=31% Similarity=0.313 Sum_probs=16.3
Q ss_pred chhhhhhCCCccccEEEEEe---CCeeEEecCCCCHHH
Q 013240 106 YSRLASKQEIDAFPTLKIFM---HGIPTEYYGPRKAEL 140 (447)
Q Consensus 106 ~~~l~~~~~i~~~Ptl~~~~---~g~~~~y~g~~~~~~ 140 (447)
+..++++++|+++||+++|. ++..+.-.|..+.+.
T Consensus 136 D~~la~~m~I~~~Ptlvi~~~~~~~~g~~i~g~~~~~~ 173 (176)
T PF13743_consen 136 DQQLAREMGITGFPTLVIFNENNEEYGILIEGYYSYEV 173 (176)
T ss_dssp HHHHHHHTT-SSSSEEEEE-------------------
T ss_pred HHHHHHHcCCCCCCEEEEEecccccccccccccccccc
Confidence 45789999999999999998 233344455554443
No 339
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=68.48 E-value=28 Score=25.19 Aligned_cols=68 Identities=21% Similarity=0.356 Sum_probs=44.8
Q ss_pred ChhhHHHHHHHHHHHHHhCCCceEEEEeccchHhHHhhcCCCCCCCCceEEEEeCCccceecCCCCCCCcccchhHHHHH
Q 013240 282 TEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRF 361 (447)
Q Consensus 282 ~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~~~~y~~~~g~~~~~~~~~~~~i~~F 361 (447)
+...-......++.++..+. +..-.+|..+.+++ ..+|+ ...|+++ +|.+-. +.| ...+.+.+.+|
T Consensus 9 ~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~-~~ygv---~~vPalv-Ing~~~---~~G-----~~p~~~el~~~ 74 (76)
T PF13192_consen 9 GCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEI-EKYGV---MSVPALV-INGKVV---FVG-----RVPSKEELKEL 74 (76)
T ss_dssp SCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHH-HHTT----SSSSEEE-ETTEEE---EES-----S--HHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHH-HHcCC---CCCCEEE-ECCEEE---EEe-----cCCCHHHHHHH
Confidence 35555677788888888885 77878888777777 88999 7899994 454321 222 14456677777
Q ss_pred HH
Q 013240 362 LE 363 (447)
Q Consensus 362 l~ 363 (447)
|+
T Consensus 75 l~ 76 (76)
T PF13192_consen 75 LE 76 (76)
T ss_dssp HH
T ss_pred hC
Confidence 64
No 340
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=68.05 E-value=75 Score=27.01 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=36.2
Q ss_pred HhHHhhcCCCCCCCCceEEEEeCCccceecCC--C-CCC-CcccchhHHHHHHHHHhcCcccc
Q 013240 314 ADFADTFEANKKSKLPKMVVWDGNENYLTVIG--S-ESI-DEEDQGSQISRFLEGYREGRTEQ 372 (447)
Q Consensus 314 ~~~~~~~~i~~~~~~P~vvi~~~~~~y~~~~g--~-~~~-~~~~~~~~i~~Fl~~~~~gkl~~ 372 (447)
..+.+.+|+ ...|.+++++.+++-....+ . ... ....+.+.+.+-|+..++|+-.+
T Consensus 99 ~~~~~~~~v---~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 158 (171)
T cd02969 99 QEVAKAYGA---ACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVP 158 (171)
T ss_pred hHHHHHcCC---CcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCC
Confidence 456667777 56799999998764332211 0 001 12356678999999999997554
No 341
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=66.63 E-value=33 Score=22.33 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHhCCCceEEEEeccchHhHHh---hcCCCCCCCCceEEEEeCC
Q 013240 285 KSQKLVTTLKAAASANRELVFCYVGIKQFADFAD---TFEANKKSKLPKMVVWDGN 337 (447)
Q Consensus 285 ~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~---~~~i~~~~~~P~vvi~~~~ 337 (447)
.-......+...+....++.+..++......... .++. ...|++++.+.+
T Consensus 11 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~P~~~~~~~~ 63 (69)
T cd01659 11 FCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGV---GGVPTLVVFGPG 63 (69)
T ss_pred hHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCC---ccccEEEEEeCC
Confidence 3344455555554445569999999887666554 4444 779999988865
No 342
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=66.09 E-value=9.1 Score=31.41 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=22.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccc
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY 106 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~ 106 (447)
+..|+.++|+.|++....+++- + |.+-.+|..++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----g----i~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----D----IPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----C----CCcEEeeccCC
Confidence 4567799999999976555441 2 55666665433
No 343
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=65.74 E-value=10 Score=33.06 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=33.9
Q ss_pred hhhhhhCCCccccEEEEEeCCeeEEe-cC--CCCHHHHHHHHHHhc
Q 013240 107 SRLASKQEIDAFPTLKIFMHGIPTEY-YG--PRKAELLVRYLKKFV 149 (447)
Q Consensus 107 ~~l~~~~~i~~~Ptl~~~~~g~~~~y-~g--~~~~~~i~~fi~~~~ 149 (447)
..+|++.++.|||||.+-++|+...- .| -.+.+++..++...+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 67899999999999999999987653 34 356688888876654
No 344
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=64.06 E-value=60 Score=25.89 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=15.5
Q ss_pred HhHHhhcCCCCCCCCceEEEEeCCc
Q 013240 314 ADFADTFEANKKSKLPKMVVWDGNE 338 (447)
Q Consensus 314 ~~~~~~~~i~~~~~~P~vvi~~~~~ 338 (447)
..+++.+++ ...|+.++++.++
T Consensus 90 ~~~~~~~~v---~~~P~~~~ld~~G 111 (127)
T cd03010 90 GRVGIDLGV---YGVPETFLIDGDG 111 (127)
T ss_pred chHHHhcCC---CCCCeEEEECCCc
Confidence 455666766 5689888888765
No 345
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=64.02 E-value=9.3 Score=27.97 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 013240 7 GRIWILLCLLLLTGRGMMLLTGRGLSS 33 (447)
Q Consensus 7 ~~~~~~~~ll~~~~~~~~~~~~~~~~~ 33 (447)
+++|||.+|.+.++.++++.++.+.++
T Consensus 3 RRlwiLslLAVtLtVALAAPsQKsKRS 29 (100)
T PF05984_consen 3 RRLWILSLLAVTLTVALAAPSQKSKRS 29 (100)
T ss_pred hhhHHHHHHHHHHHHHhhccccccccc
Confidence 467888777777777777665555444
No 346
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=63.47 E-value=6.7 Score=29.07 Aligned_cols=19 Identities=21% Similarity=0.630 Sum_probs=11.1
Q ss_pred HHH-HHHHHHHHHHhcCCCC
Q 013240 396 IVF-MVAMLMLLRTLGKDDE 414 (447)
Q Consensus 396 ~~f-~~~~~~~i~~~~~~~~ 414 (447)
++| +|+++.+|...+++.+
T Consensus 30 AIFQliCilAiI~~~~~s~~ 49 (85)
T PF06783_consen 30 AIFQLICILAIILPISKSHE 49 (85)
T ss_pred HHHHHHHHHheeeecCCccC
Confidence 445 6666666666655443
No 347
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=60.27 E-value=13 Score=29.78 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=23.3
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccc
Q 013240 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY 106 (447)
Q Consensus 65 V~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~ 106 (447)
..|+.++|+.|++....+++ ++ +.+-.+|..++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~~----i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-----NG----IEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----cC----CceEEEecCCC
Confidence 35789999999998766665 12 55666776544
No 348
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=60.12 E-value=15 Score=32.42 Aligned_cols=103 Identities=16% Similarity=0.118 Sum_probs=63.6
Q ss_pred CceecCChhHHHHHHHhcCCcccEEEeecCCh-h-------HHHHHHHHhhhhhHhHHhhccchhhhhhcCCCCCCeEEE
Q 013240 152 DVSILNSDAEVSDFVENAGTFFPLFIGFGLDE-S-------VMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVA 223 (447)
Q Consensus 152 ~v~~i~s~~~~~~~l~~~~~~~~~vi~f~~~~-~-------~~~~~a~~~~~~~~f~~~~~~~~~~~~~~~i~~~P~l~~ 223 (447)
.|.++.+.+++-+.+.......+++|..+.+. . ...-+|..|... .|--++........+|..+..|++.+
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~v-KFckikss~~gas~~F~~n~lP~Lli 217 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIV-KFCKIKSSNTGASDRFSLNVLPTLLI 217 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCce-eEEEeeeccccchhhhcccCCceEEE
Confidence 58889998888888877644444555555432 1 233456666542 33333333445667788888999999
Q ss_pred EcCCCC--Cc----ccccCCCChHHHHHHHHhhCCCCc
Q 013240 224 LQPSYN--EH----NIFYGPFDEEFLEEFIKQNFLPLS 255 (447)
Q Consensus 224 ~~~~~~--~~----~~~~g~~~~~~i~~fI~~~~~p~~ 255 (447)
|+.+.- +. ..+-.++...++..|++...+-+.
T Consensus 218 YkgGeLIgNFv~va~qlgedffa~dle~FL~e~gllpe 255 (273)
T KOG3171|consen 218 YKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYGLLPE 255 (273)
T ss_pred eeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCCCcc
Confidence 987521 11 112235667889999998765443
No 349
>PRK12559 transcriptional regulator Spx; Provisional
Probab=59.60 E-value=15 Score=30.12 Aligned_cols=21 Identities=24% Similarity=0.588 Sum_probs=15.8
Q ss_pred EEEEECCCChhhhhhhHHHHH
Q 013240 64 LVDFYAPWCGHCKRLAPQLDE 84 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~ 84 (447)
++.|+.|+|+.|++....+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 456789999999987655544
No 350
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=59.10 E-value=24 Score=27.95 Aligned_cols=57 Identities=19% Similarity=0.113 Sum_probs=36.2
Q ss_pred HHHHHHHHhhhhhHhHHhhccchhhhhhcCCCCCCeEEEEcCCCCCcccccCCCChHHHH
Q 013240 185 VMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLE 244 (447)
Q Consensus 185 ~~~~~a~~~~~~~~f~~~~~~~~~~~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~ 244 (447)
.....+.++.- .+.+..+.+.++...|++.+.|+++++.++. ....+.|-.+.+.|.
T Consensus 63 ~~~~~~~~~~~--~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~ 119 (123)
T cd03011 63 AVARFMQKKGY--GFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLR 119 (123)
T ss_pred HHHHHHHHcCC--CccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEEEeccCCHHHHH
Confidence 34444444432 2222333445688889999999999998764 444566777776664
No 351
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=57.87 E-value=14 Score=32.08 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=30.1
Q ss_pred cchhhhhhCCCccccEEEEEeCCeeEEecCCCCHHHHHHHH
Q 013240 105 KYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYL 145 (447)
Q Consensus 105 ~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~i~~fi 145 (447)
.+...+.++||.|+|++++ +|+ ..+.|....+.+.+.+
T Consensus 155 ~~~~~a~~~gv~GvP~~vv--~g~-~~~~G~~~~~~l~~~l 192 (193)
T PF01323_consen 155 EDTAEARQLGVFGVPTFVV--NGK-YRFFGADRLDELEDAL 192 (193)
T ss_dssp HHHHHHHHTTCSSSSEEEE--TTT-EEEESCSSHHHHHHHH
T ss_pred HHHHHHHHcCCcccCEEEE--CCE-EEEECCCCHHHHHHHh
Confidence 3466788999999999999 666 5578888888777655
No 352
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=57.45 E-value=39 Score=24.47 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=38.1
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCC--ceEEEEeccchHhHHhhcCCCCCCCCceEE
Q 013240 275 LAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMV 332 (447)
Q Consensus 275 l~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~~i~~~~~~P~vv 332 (447)
.+|.. +.........+.++++..++.+ +.+-.+|..++++.++...+ --.|+++
T Consensus 5 ~Lyv~-g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~i---vAtPtLv 60 (72)
T cd02978 5 RLYVA-GRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKI---VATPTLV 60 (72)
T ss_pred EEEEC-CCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCE---EEechhh
Confidence 34443 4445556677778888887654 77888999999999998877 4456543
No 353
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=57.39 E-value=35 Score=23.13 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=30.0
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccch--hhhhhCCCccccEEEE
Q 013240 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS--RLASKQEIDAFPTLKI 123 (447)
Q Consensus 65 V~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~--~l~~~~~i~~~Ptl~~ 123 (447)
..|+.++|+.|.+..-.+... + -++....++-.... ++-+..+-..+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~-----~--i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEK-----G--LPYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHc-----C--CCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 357789999998776555543 2 12333344433222 2344566677898764
No 354
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=55.37 E-value=1e+02 Score=24.89 Aligned_cols=21 Identities=19% Similarity=0.506 Sum_probs=15.5
Q ss_pred HHhhcCCCCCCCCceEEEEeCCcc
Q 013240 316 FADTFEANKKSKLPKMVVWDGNEN 339 (447)
Q Consensus 316 ~~~~~~i~~~~~~P~vvi~~~~~~ 339 (447)
+.+.+++ ...|++++++.+++
T Consensus 91 ~~~~~~v---~~iPt~~lid~~G~ 111 (132)
T cd02964 91 LEKQFKV---EGIPTLVVLKPDGD 111 (132)
T ss_pred HHHHcCC---CCCCEEEEECCCCC
Confidence 4455777 67899999998653
No 355
>PHA03075 glutaredoxin-like protein; Provisional
Probab=55.27 E-value=13 Score=29.42 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=26.9
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeC
Q 013240 61 DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103 (447)
Q Consensus 61 ~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~ 103 (447)
+.++|.|-.|.|+-|+-....+.++..+ -.+.+||.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~lede-------Y~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDE-------YDILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcc-------ccEEEEEe
Confidence 4679999999999999888877665543 33566663
No 356
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=54.07 E-value=24 Score=28.11 Aligned_cols=20 Identities=25% Similarity=0.622 Sum_probs=15.8
Q ss_pred EEEECCCChhhhhhhHHHHH
Q 013240 65 VDFYAPWCGHCKRLAPQLDE 84 (447)
Q Consensus 65 V~f~~~~C~~C~~~~p~~~~ 84 (447)
..++.++|+.|++....+++
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~ 22 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEE 22 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 45778999999998766665
No 357
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=52.84 E-value=23 Score=29.02 Aligned_cols=32 Identities=13% Similarity=0.299 Sum_probs=20.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCc
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~ 104 (447)
+..|+.|+|+.|++....+++ ++ +.+-.+|..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-----~~----i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA-----HQ----LSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-----cC----CCeEEEECC
Confidence 346778999999987655443 12 556556643
No 358
>PRK13617 psbV cytochrome c-550; Provisional
Probab=52.17 E-value=11 Score=32.18 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=22.2
Q ss_pred cccCCCCeEEeChhhHHHhHccCCeEEEEEECCCChhhhhh
Q 013240 38 KFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRL 78 (447)
Q Consensus 38 ~~~~~~~v~~l~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~ 78 (447)
..+..+....++.+++..- .+. | ...|..|+..
T Consensus 44 ~~~~~g~~~~~s~~~~~~G---~~~----F-~~~C~~CH~~ 76 (170)
T PRK13617 44 PADPSGSQVTFSESEIKAG---RKV----F-NTSCGTCHAG 76 (170)
T ss_pred ecCCCCCeEEeCHHHHHHH---HHH----H-HcchhhhccC
Confidence 3456678889998877652 222 2 6789999754
No 359
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=51.46 E-value=85 Score=22.62 Aligned_cols=49 Identities=18% Similarity=0.073 Sum_probs=35.3
Q ss_pred CChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHhHHhhcCCCCCCCCceEEEEeC
Q 013240 281 ETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 336 (447)
Q Consensus 281 ~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~ 336 (447)
.....-+.....++++++++.. +.|..+| + .+-+..+|+ ...|++++ ++
T Consensus 8 ~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~-~~~a~~~~v---~~vPti~i-~G 57 (76)
T TIGR00412 8 TGCANCQMTEKNVKKAVEELGIDAEFEKVT--D-MNEILEAGV---TATPGVAV-DG 57 (76)
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--C-HHHHHHcCC---CcCCEEEE-CC
Confidence 4555566777888899988865 7777776 2 334667888 78999988 44
No 360
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=50.34 E-value=85 Score=21.91 Aligned_cols=69 Identities=22% Similarity=0.250 Sum_probs=39.3
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccc-hhhhhhCCCccccEEEEEeCCeeEEecCCCCHHHHHH
Q 013240 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-SRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVR 143 (447)
Q Consensus 65 V~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~-~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~i~~ 143 (447)
..++.++|+.|++..-.+++. + -+.....++.... +++.+......+|++. .+|.. -.....|.+
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~-----g--i~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~-----l~es~aI~~ 67 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEK-----G--VSVEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLV-----LYESRIIME 67 (73)
T ss_pred EEEECCCChhHHHHHHHHHHc-----C--CccEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEE-----EEcHHHHHH
Confidence 467789999998885554332 2 2233444554332 4555555666889774 33422 234566777
Q ss_pred HHHH
Q 013240 144 YLKK 147 (447)
Q Consensus 144 fi~~ 147 (447)
|+.+
T Consensus 68 yL~~ 71 (73)
T cd03059 68 YLDE 71 (73)
T ss_pred HHHh
Confidence 7654
No 361
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=49.82 E-value=2.2e+02 Score=26.42 Aligned_cols=66 Identities=9% Similarity=0.143 Sum_probs=44.5
Q ss_pred ccChhhHHhhhcCCCcEEEEEEeCC-----ChhhHHHHHHHHHHHHHhCC-CceEEEEeccchHhHHhh----cCC
Q 013240 257 PINQDTLNLLKDDKRKIVLAIVEDE-----TEEKSQKLVTTLKAAASANR-ELVFCYVGIKQFADFADT----FEA 322 (447)
Q Consensus 257 ~l~~~~~~~~~~~~~~~vl~~~~~~-----~~~~~~~~~~~l~~~a~~~~-~~~f~~vd~~~~~~~~~~----~~i 322 (447)
.+++.+-+.+..-+.|+-+.++... .........+.|++.+...+ ++.+-++|....+...+. +|+
T Consensus 11 sLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi 86 (271)
T PF09822_consen 11 SLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGI 86 (271)
T ss_pred cCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCC
Confidence 3455555556666678777776544 13344566778888888888 599999998655555544 787
No 362
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=49.62 E-value=44 Score=29.06 Aligned_cols=45 Identities=11% Similarity=-0.052 Sum_probs=34.6
Q ss_pred chhhhhhcCCCCCCeEEEEcCCCCCcccccCCCChHHHHHHHHhh
Q 013240 206 SEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 250 (447)
Q Consensus 206 ~~~~~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~fI~~~ 250 (447)
...+...|++...|+.+++.++..-...+.|..+.+.+.++|...
T Consensus 131 ~~~~~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~ 175 (185)
T PRK15412 131 DGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPL 175 (185)
T ss_pred CccHHHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHH
Confidence 344666789999999888887655566677999988888888753
No 363
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.61 E-value=67 Score=24.86 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=43.7
Q ss_pred hhHHHhHccCCeEEEEEE---CCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCC-CccccEEE-EEe
Q 013240 51 SNFDSAISSFDYILVDFY---APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQE-IDAFPTLK-IFM 125 (447)
Q Consensus 51 ~~f~~~~~~~~~~lV~f~---~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~-i~~~Ptl~-~~~ 125 (447)
+-.++.+++++.+|-+=- .|-|+++.+....+ ...+. +.|+.||.-.++++-+... ....||+- +|.
T Consensus 6 ~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL-------~~~g~-v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi 77 (105)
T COG0278 6 DRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQIL-------SACGV-VDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYV 77 (105)
T ss_pred HHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHH-------HHcCC-cceeEEeeccCHHHHhccHhhcCCCCCceeeE
Confidence 345667766554433322 46788776654333 33333 7789999988888866543 44567765 666
Q ss_pred CCeeE
Q 013240 126 HGIPT 130 (447)
Q Consensus 126 ~g~~~ 130 (447)
+|..+
T Consensus 78 ~GEfv 82 (105)
T COG0278 78 NGEFV 82 (105)
T ss_pred CCEEe
Confidence 77544
No 364
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=49.60 E-value=1e+02 Score=24.13 Aligned_cols=43 Identities=9% Similarity=-0.005 Sum_probs=24.6
Q ss_pred CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC--CceEEEEecc
Q 013240 269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANR--ELVFCYVGIK 311 (447)
Q Consensus 269 ~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~--~~~f~~vd~~ 311 (447)
.++++++.|+.......-......|.++..+++ ++.+..|..+
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d 68 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTD 68 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccc
Confidence 446777777754344544555555666665544 3666555543
No 365
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=49.58 E-value=1.5e+02 Score=25.26 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=47.5
Q ss_pred HHHHHhhCCCCcc--ccChhhHHhhhcCCCcEEEEEEeCCChhhHHHHHHHHH--HHHHhC-CCceEEEEeccchHhHHh
Q 013240 244 EEFIKQNFLPLSV--PINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLK--AAASAN-RELVFCYVGIKQFADFAD 318 (447)
Q Consensus 244 ~~fI~~~~~p~~~--~l~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~--~~a~~~-~~~~f~~vd~~~~~~~~~ 318 (447)
.-+++++.-..|. ..+++.++.....++|+++.+..+.-.--..-..+.+. ++|... +++.=+.||.++.+++-.
T Consensus 9 Spyl~~ha~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~ 88 (163)
T PF03190_consen 9 SPYLRQHAHNPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDK 88 (163)
T ss_dssp -HHHHTTTTSSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHH
T ss_pred CHHHHHhccCCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHH
Confidence 4577777666665 66678888888888898888875321101000001111 122221 235566789888777655
Q ss_pred hcC-----CCCCCCCceEEEEeCCc
Q 013240 319 TFE-----ANKKSKLPKMVVWDGNE 338 (447)
Q Consensus 319 ~~~-----i~~~~~~P~vvi~~~~~ 338 (447)
.+. +....++|.-+++.+++
T Consensus 89 ~y~~~~~~~~~~gGwPl~vfltPdg 113 (163)
T PF03190_consen 89 IYMNAVQAMSGSGGWPLTVFLTPDG 113 (163)
T ss_dssp HHHHHHHHHHS---SSEEEEE-TTS
T ss_pred HHHHHHHHhcCCCCCCceEEECCCC
Confidence 440 11237899999999974
No 366
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=49.38 E-value=17 Score=32.57 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=16.5
Q ss_pred cceehhHHHHHHHHHHHHHhcCCCCCc
Q 013240 390 IRSVYIIVFMVAMLMLLRTLGKDDEEP 416 (447)
Q Consensus 390 ~~~~~~~~f~~~~~~~i~~~~~~~~~~ 416 (447)
+|.+-++|+++++++.+++|++++.++
T Consensus 16 LNiaI~IV~lLIiiva~~lf~~~~~~~ 42 (217)
T PF07423_consen 16 LNIAIGIVSLLIIIVAYQLFFGGDDSP 42 (217)
T ss_pred HHHHHHHHHHHHHHHhhhheecCCCch
Confidence 555555666777777777777544443
No 367
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=48.88 E-value=31 Score=24.19 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=31.6
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCc----cchhhhhhCCCccccEEEE
Q 013240 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD----KYSRLASKQEIDAFPTLKI 123 (447)
Q Consensus 65 V~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~----~~~~l~~~~~i~~~Ptl~~ 123 (447)
..|+.++|+.|++..-.+... +. ......++.. ...++.+...-..+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~-----~l--~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEK-----GI--DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHc-----CC--CceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 467789999999887665543 21 2333444432 1244555566667899864
No 368
>COG5510 Predicted small secreted protein [Function unknown]
Probab=48.45 E-value=32 Score=21.98 Aligned_cols=24 Identities=25% Similarity=0.117 Sum_probs=9.1
Q ss_pred chHHHHHHHHHHHHHHHHhhhhcC
Q 013240 6 KGRIWILLCLLLLTGRGMMLLTGR 29 (447)
Q Consensus 6 ~~~~~~~~~ll~~~~~~~~~~~~~ 29 (447)
++.+.+++++++.+++...+.+.+
T Consensus 3 k~t~l~i~~vll~s~llaaCNT~r 26 (44)
T COG5510 3 KKTILLIALVLLASTLLAACNTMR 26 (44)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhh
Confidence 333333333333333333444433
No 369
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=48.19 E-value=17 Score=27.09 Aligned_cols=53 Identities=23% Similarity=0.162 Sum_probs=41.3
Q ss_pred CCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEE
Q 013240 69 APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123 (447)
Q Consensus 69 ~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~ 123 (447)
+..-..+.........+.+.. .+.++.+-.||..++|++++.++|-.+||++-
T Consensus 5 ~g~~~~s~~a~~~l~~l~~~~--l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 5 AGRTPSSERAIENLRRLCEEY--LGGRYELEVIDVLEQPELAEEDRIVATPTLIK 57 (82)
T ss_dssp SSBHHHHHHHHHHHHHHHHCH--CTTTEEEEEEETTTSHSHHTTTEEECHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHhh--CCCcEEEEEEEcccCHhHHhHCCeeecceEee
Confidence 444456677777777777653 24569999999999999999999999999763
No 370
>PHA02125 thioredoxin-like protein
Probab=47.84 E-value=1e+02 Score=22.06 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=30.8
Q ss_pred CChhhHHHHHHHHHHHHHhCCCceEEEEeccchHhHHhhcCCCCCCCCceEE
Q 013240 281 ETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMV 332 (447)
Q Consensus 281 ~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~~i~~~~~~P~vv 332 (447)
.....-+.....|.+++ +.|+.||.+...++++.+++ ...|+++
T Consensus 8 ~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v---~~~PT~~ 51 (75)
T PHA02125 8 EWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHI---RSLPTLV 51 (75)
T ss_pred CCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCC---ceeCeEE
Confidence 34444445555565432 45778888888999999998 7899986
No 371
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=47.65 E-value=97 Score=22.68 Aligned_cols=78 Identities=10% Similarity=0.077 Sum_probs=44.6
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCCCceEEEEeccchHhHHhhcCCCCCCCCceEEEEeCCccceecCCCCCCCcccchh
Q 013240 277 IVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGS 356 (447)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~~~~y~~~~g~~~~~~~~~~~ 356 (447)
++......--++....|+.++...+ +.+..+|..+.+++...|+. ..|.+.+-+..+..... .....++.+
T Consensus 4 l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d~~l~~~Y~~----~IPVl~~~~~~~~~~~~----~~~~~~d~~ 74 (81)
T PF05768_consen 4 LYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDEDPELFEKYGY----RIPVLHIDGIRQFKEQE----ELKWRFDEE 74 (81)
T ss_dssp EEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTTHHHHHHSCT----STSEEEETT-GGGCTSE----EEESSB-HH
T ss_pred EEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHhcC----CCCEEEEcCcccccccc----eeCCCCCHH
Confidence 3444454444555666666544443 88889999988888888875 47876655532100000 012234577
Q ss_pred HHHHHHH
Q 013240 357 QISRFLE 363 (447)
Q Consensus 357 ~i~~Fl~ 363 (447)
.+.+||+
T Consensus 75 ~L~~~L~ 81 (81)
T PF05768_consen 75 QLRAWLE 81 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 8888874
No 372
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=44.67 E-value=1.5e+02 Score=23.27 Aligned_cols=101 Identities=18% Similarity=0.116 Sum_probs=71.2
Q ss_pred EeChhhHHHhHc--cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhh----hCCCcc-cc
Q 013240 47 ELDESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLAS----KQEIDA-FP 119 (447)
Q Consensus 47 ~l~~~~f~~~~~--~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~----~~~i~~-~P 119 (447)
.|+..++-++=. -++..+|.|--+-.+.-.++.+.++++|+.... +++..|.-||-++.|-+.. .|+|.- -|
T Consensus 5 kl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~-np~LsiIWIDPD~FPllv~yWektF~IDl~~P 83 (120)
T cd03074 5 KLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTD-NPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRP 83 (120)
T ss_pred hccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCc-CCCceEEEECCccCchhhHHHHhhcCcccCCC
Confidence 344555554442 236888889888889999999999999998654 6789999999999887754 466663 48
Q ss_pred EEEEEeCC--eeE--EecC---CCCHHHHHHHHHHh
Q 013240 120 TLKIFMHG--IPT--EYYG---PRKAELLVRYLKKF 148 (447)
Q Consensus 120 tl~~~~~g--~~~--~y~g---~~~~~~i~~fi~~~ 148 (447)
.+-+..-. ..+ +-.+ .-++++|..|++..
T Consensus 84 qIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 84 QIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred ceeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence 88777432 222 2223 36788888888753
No 373
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=44.59 E-value=45 Score=23.55 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=31.0
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCcc----chhhhhhCCCccccEEE
Q 013240 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----YSRLASKQEIDAFPTLK 122 (447)
Q Consensus 65 V~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~----~~~l~~~~~i~~~Ptl~ 122 (447)
..++.++|++|++..-.+.+. + -++....++..+ .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~-----g--i~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKAL-----G--LELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHc-----C--CCCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 467899999998765444432 2 123344444322 25666666667889995
No 374
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=44.06 E-value=31 Score=29.59 Aligned_cols=45 Identities=11% Similarity=-0.003 Sum_probs=34.7
Q ss_pred chhhhhhcCCCCCCeEEEEcCCCCCcccccCCCChHHHHHHHHhh
Q 013240 206 SEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 250 (447)
Q Consensus 206 ~~~~~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~fI~~~ 250 (447)
...+...|++.+.|+.+++.+++.-...+.|..+.+.+.+++.+.
T Consensus 126 ~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 126 NGKLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred CCchHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHH
Confidence 446777889988998888877555455677888988999988765
No 375
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=43.53 E-value=1.3e+02 Score=22.06 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=36.6
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCCCceEEEEeccch----HhHHhhcCCCCCCCCceEEE
Q 013240 277 IVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQF----ADFADTFEANKKSKLPKMVV 333 (447)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~----~~~~~~~~i~~~~~~P~vvi 333 (447)
++.......-....+.|++++.++.++.+..+|.... .++....|. .....|+++|
T Consensus 5 iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~-~~~~vP~ifi 64 (85)
T PRK11200 5 IFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGK-PVETVPQIFV 64 (85)
T ss_pred EEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCC-CCCcCCEEEE
Confidence 3444566666778888888887766788888888643 234444443 2257899864
No 376
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=43.24 E-value=91 Score=24.12 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=11.7
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhC
Q 013240 271 RKIVLAIVEDETEEKSQKLVTTLKAAASAN 300 (447)
Q Consensus 271 ~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~ 300 (447)
+++++.|.. .....-.+....++++++++
T Consensus 22 k~vvl~F~~-~wC~~C~~~~p~l~~~~~~~ 50 (114)
T cd02967 22 RPTLLFFLS-PTCPVCKKLLPVIRSIARAE 50 (114)
T ss_pred CeEEEEEEC-CCCcchHhHhHHHHHHHHHh
Confidence 444444442 22222233334444444444
No 377
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=42.99 E-value=1.1e+02 Score=29.81 Aligned_cols=93 Identities=18% Similarity=0.354 Sum_probs=64.5
Q ss_pred EEeChhhHHHhHc-cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEE
Q 013240 46 IELDESNFDSAIS-SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF 124 (447)
Q Consensus 46 ~~l~~~~f~~~~~-~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~ 124 (447)
..++.+-.+++-+ +..+.|=.+++--|+.| |...++-+.+.-.+++|.-..+|..-..+-.+.-+|.++|++++
T Consensus 101 pk~~q~vieqik~i~g~~~FETy~SltC~nC----PDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvfl- 175 (520)
T COG3634 101 PKEDQDVIEQIKAIDGDFHFETYFSLTCHNC----PDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVFL- 175 (520)
T ss_pred CchhHHHHHHHHhcCCceeEEEEEEeeccCC----hHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEEE-
Confidence 3444444455432 45678888899999999 55666666666667788888899877777777789999999876
Q ss_pred eCCeeEEe-cCCCCHHHHHHHHH
Q 013240 125 MHGIPTEY-YGPRKAELLVRYLK 146 (447)
Q Consensus 125 ~~g~~~~y-~g~~~~~~i~~fi~ 146 (447)
+|+ .| .|..+.++|..-+.
T Consensus 176 -nGe--~fg~GRmtleeilaki~ 195 (520)
T COG3634 176 -NGE--EFGQGRMTLEEILAKID 195 (520)
T ss_pred -cch--hhcccceeHHHHHHHhc
Confidence 332 22 46667777765544
No 378
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=42.94 E-value=1.1e+02 Score=25.12 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.7
Q ss_pred cchhhhhhcCCCCCCeEEEEcCC
Q 013240 205 FSEDTMVLYDFDKVPALVALQPS 227 (447)
Q Consensus 205 ~~~~~~~~~~i~~~P~l~~~~~~ 227 (447)
.++.+.++|+|+..|++++.+++
T Consensus 59 IdP~lF~~f~I~~VPa~V~~~~~ 81 (130)
T TIGR02742 59 IDPQWFKQFDITAVPAFVVVKDG 81 (130)
T ss_pred EChHHHhhcCceEcCEEEEECCC
Confidence 47889999999999999999875
No 379
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=42.52 E-value=2.2e+02 Score=25.37 Aligned_cols=72 Identities=24% Similarity=0.242 Sum_probs=50.0
Q ss_pred EECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCCeeEEecCCCCHHHHHHHHH
Q 013240 67 FYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLK 146 (447)
Q Consensus 67 f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~i~~fi~ 146 (447)
|....|..|-.+-..++. ++.-++|.| ++++..+.++-+.+|=++|.+++ +|+. -|-++..+++|..-+.
T Consensus 16 ~~HktC~ssy~Lf~~L~n-----kgll~~Vki--i~a~~p~f~~~~~~V~SvP~Vf~--DGel-~~~dpVdp~~ies~~~ 85 (265)
T COG5494 16 FTHKTCVSSYMLFEYLEN-----KGLLGKVKI--IDAELPPFLAFEKGVISVPSVFI--DGEL-VYADPVDPEEIESILS 85 (265)
T ss_pred EEecchHHHHHHHHHHHh-----cCCCCCceE--EEcCCChHHHhhcceeecceEEE--cCeE-EEcCCCCHHHHHHHHc
Confidence 446678888877544443 344345655 67888888888999999999764 5543 3677888888877766
Q ss_pred Hh
Q 013240 147 KF 148 (447)
Q Consensus 147 ~~ 148 (447)
-+
T Consensus 86 G~ 87 (265)
T COG5494 86 GQ 87 (265)
T ss_pred Cc
Confidence 55
No 380
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=42.01 E-value=53 Score=29.71 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=38.4
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCC-CCeEEEEEeCc
Q 013240 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLK-EPIVIAKVDAD 104 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~-~~v~~~~Vd~~ 104 (447)
....++|.+-..+|..|..-...++.+-..|+..+ .+|.|..||--
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 34688888988999999999999999998887655 37999999953
No 381
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=40.50 E-value=3e+02 Score=25.43 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=48.3
Q ss_pred CCeEEeChhhHHHhHccCCeEEEEEECCC-C-hhhhhhhHHHHHHHHHhhcCCC-CeEEEEEeCccchhhhhh----CCC
Q 013240 43 GKVIELDESNFDSAISSFDYILVDFYAPW-C-GHCKRLAPQLDEAAPILAKLKE-PIVIAKVDADKYSRLASK----QEI 115 (447)
Q Consensus 43 ~~v~~l~~~~f~~~~~~~~~~lV~f~~~~-C-~~C~~~~p~~~~~a~~l~~~~~-~v~~~~Vd~~~~~~l~~~----~~i 115 (447)
+....|++.+-+-+-+=++|+-|.+|.+- - ..-..+.+...++-++++..++ +|.+-.||-+.+++.+++ +||
T Consensus 7 ~k~ysLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi 86 (271)
T PF09822_consen 7 NKRYSLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGI 86 (271)
T ss_pred CCCccCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCC
Confidence 56677777665554444557766666443 1 1234455555555555555555 799999999877777666 888
Q ss_pred ccc
Q 013240 116 DAF 118 (447)
Q Consensus 116 ~~~ 118 (447)
...
T Consensus 87 ~~~ 89 (271)
T PF09822_consen 87 QPV 89 (271)
T ss_pred Ccc
Confidence 773
No 382
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=40.30 E-value=2.1e+02 Score=23.60 Aligned_cols=88 Identities=14% Similarity=0.109 Sum_probs=55.3
Q ss_pred HccCCeEEEEEECCCC----hhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccc------------------hhhhhhCC
Q 013240 57 ISSFDYILVDFYAPWC----GHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY------------------SRLASKQE 114 (447)
Q Consensus 57 ~~~~~~~lV~f~~~~C----~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~------------------~~l~~~~~ 114 (447)
-++.|+.+|+.++|.- ..|+...- =+.+.+-++. .+.+-.-|.+.. ...++.++
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~-se~Vi~fl~~---nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~ 93 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLC-AESIVQYLSQ---NFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIK 93 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhc-CHHHHHHHHc---CEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcC
Confidence 3456899999998864 34544311 0123333333 266666665443 12456678
Q ss_pred CccccEEEEEeCC----eeE-EecCCCCHHHHHHHHHHh
Q 013240 115 IDAFPTLKIFMHG----IPT-EYYGPRKAELLVRYLKKF 148 (447)
Q Consensus 115 i~~~Ptl~~~~~g----~~~-~y~g~~~~~~i~~fi~~~ 148 (447)
...+|.+.+.... ..+ ...|..+++++++-+...
T Consensus 94 ~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ 132 (136)
T cd02990 94 TDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEA 132 (136)
T ss_pred cCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHH
Confidence 9999999998542 222 478999999988877654
No 383
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=39.81 E-value=1.4e+02 Score=23.72 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=20.0
Q ss_pred cchhhhhhcCCCCCCeEEEEcC
Q 013240 205 FSEDTMVLYDFDKVPALVALQP 226 (447)
Q Consensus 205 ~~~~~~~~~~i~~~P~l~~~~~ 226 (447)
.++.+.++|+|+..|++++-++
T Consensus 59 IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 59 IDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred EChhHHhhCCceEcCEEEEEcC
Confidence 5788999999999999999876
No 384
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=39.51 E-value=1.9e+02 Score=22.94 Aligned_cols=59 Identities=8% Similarity=0.037 Sum_probs=35.6
Q ss_pred ceEEEEecc--chHhHHhhcCCCCCCCCceEEEEeCC-ccceecCCCCCCCcccchhHHHHHHHHHhc
Q 013240 303 LVFCYVGIK--QFADFADTFEANKKSKLPKMVVWDGN-ENYLTVIGSESIDEEDQGSQISRFLEGYRE 367 (447)
Q Consensus 303 ~~f~~vd~~--~~~~~~~~~~i~~~~~~P~vvi~~~~-~~y~~~~g~~~~~~~~~~~~i~~Fl~~~~~ 367 (447)
+.+.-.|.. +-.+++..++. ..+|.++++.++ ++..... .+++..+++.+..-++.+.+
T Consensus 53 fv~w~~dv~~~eg~~la~~l~~---~~~P~~~~l~~~~~~~~vv~---~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 53 MLFWACSVAKPEGYRVSQALRE---RTYPFLAMIMLKDNRMTIVG---RLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEEEEecCChHHHHHHHHhCC---CCCCEEEEEEecCCceEEEE---EEeCCCCHHHHHHHHHHHHh
Confidence 434334554 33557777877 789999999764 2332211 13456667777777766654
No 385
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=37.92 E-value=1.2e+02 Score=29.13 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=52.2
Q ss_pred CChhhhhhhHH----HHHHHHHhhcCCCCeEEEEEeCccc-hhhhh--hCCCcc--ccEEEEEeCCeeEE-ecCCCCHHH
Q 013240 71 WCGHCKRLAPQ----LDEAAPILAKLKEPIVIAKVDADKY-SRLAS--KQEIDA--FPTLKIFMHGIPTE-YYGPRKAEL 140 (447)
Q Consensus 71 ~C~~C~~~~p~----~~~~a~~l~~~~~~v~~~~Vd~~~~-~~l~~--~~~i~~--~Ptl~~~~~g~~~~-y~g~~~~~~ 140 (447)
-|+.|-+..-. ..++.+.+.....++.++.+.|--| |.=++ .+||.+ -|...+|.+|+.+. ..++.-.++
T Consensus 263 aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~ee 342 (361)
T COG0821 263 ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEE 342 (361)
T ss_pred ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHH
Confidence 58888765444 4444555555566799999999644 32222 456664 59999999998765 677776777
Q ss_pred HHHHHHHhc
Q 013240 141 LVRYLKKFV 149 (447)
Q Consensus 141 i~~fi~~~~ 149 (447)
+..-++++.
T Consensus 343 l~~~i~~~~ 351 (361)
T COG0821 343 LEALIEAYA 351 (361)
T ss_pred HHHHHHHHH
Confidence 766665543
No 386
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=37.80 E-value=38 Score=29.34 Aligned_cols=35 Identities=20% Similarity=0.397 Sum_probs=25.3
Q ss_pred hhhhhhCCCccccEEEEEeCCeeEEecCCCCHHHHHHHH
Q 013240 107 SRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYL 145 (447)
Q Consensus 107 ~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~i~~fi 145 (447)
.+.+.+.||.|+|++++ +|+ .+.|....+.+...+
T Consensus 157 ~~~a~~~gi~gvPtfvv--~g~--~~~G~~~l~~~~~~l 191 (192)
T cd03022 157 TEEAIARGVFGVPTFVV--DGE--MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHcCCCcCCeEEE--CCe--eecccccHHHHHHHh
Confidence 45677899999999998 554 456777766665544
No 387
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=37.16 E-value=26 Score=23.41 Aligned_cols=45 Identities=9% Similarity=0.142 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCccccccccCCcccccceEEeecceehhHHHHHHHHHHHHHhcC
Q 013240 358 ISRFLEGYREGRTEQKKVAGPSIFGFVNSLIGIRSVYIIVFMVAMLMLLRTLGK 411 (447)
Q Consensus 358 i~~Fl~~~~~gkl~~~~ks~p~~~~~~~~~v~~~~~~~~~f~~~~~~~i~~~~~ 411 (447)
+.+.+--+-+.|+++ ..+-..+ -...+.+++|++.+++++-..++
T Consensus 5 ~rH~~myfce~k~R~--------NsF~fVi-ik~vismimylilGi~L~yis~~ 49 (54)
T PF04835_consen 5 FRHCFMYFCENKLRP--------NSFWFVI-IKSVISMIMYLILGIALIYISSN 49 (54)
T ss_pred HHHHHHHHHHhhcCC--------chHHHHH-HHHHHHHHHHHHHHHHHhhhccC
Confidence 445555566666666 2221111 14456677888777777766655
No 388
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=36.62 E-value=22 Score=19.87 Aligned_cols=18 Identities=39% Similarity=0.606 Sum_probs=6.8
Q ss_pred ccchHHHHHHHHHHHHHH
Q 013240 4 MSKGRIWILLCLLLLTGR 21 (447)
Q Consensus 4 m~~~~~~~~~~ll~~~~~ 21 (447)
|.|+.++.++.++.+++|
T Consensus 6 mmKkil~~l~a~~~LagC 23 (25)
T PF08139_consen 6 MMKKILFPLLALFMLAGC 23 (25)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 444433333333334433
No 389
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=36.42 E-value=48 Score=28.97 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=27.2
Q ss_pred cchhhhhhCCCccccEEEEEeCCeeEEecCCCCHHHHHHHH
Q 013240 105 KYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYL 145 (447)
Q Consensus 105 ~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~i~~fi 145 (447)
.+.+.+.+.||.|+|++++ +|+ ....|..+.+.+.+-+
T Consensus 163 ~~~~~a~~~gv~G~Pt~vv--~g~-~~~~G~~~~~~~~~~i 200 (201)
T cd03024 163 ADEARARQLGISGVPFFVF--NGK-YAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHHHCCCCcCCEEEE--CCe-EeecCCCCHHHHHHHh
Confidence 3456778899999999998 443 2357888877776543
No 390
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=36.38 E-value=1.6e+02 Score=21.89 Aligned_cols=53 Identities=15% Similarity=0.290 Sum_probs=31.3
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccc-hhhhhhCCCccccEEEE
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-SRLASKQEIDAFPTLKI 123 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~-~~l~~~~~i~~~Ptl~~ 123 (447)
+..++.+.|++|++..-.+.. ++. ++....++.... ..+.+......+|.+..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~-----~gl--~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAA-----KNI--PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHH-----cCC--CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 555678889999877444333 222 244445554333 33555566677899874
No 391
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=35.82 E-value=1.4e+02 Score=26.62 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=18.1
Q ss_pred EEECCCChhhhhhhHHHHHHHHH
Q 013240 66 DFYAPWCGHCKRLAPQLDEAAPI 88 (447)
Q Consensus 66 ~f~~~~C~~C~~~~p~~~~~a~~ 88 (447)
+|++..|..|-.....+.+++..
T Consensus 4 LFTSQGCsSCPpAD~~L~~l~~~ 26 (202)
T PF06764_consen 4 LFTSQGCSSCPPADRLLSELAAR 26 (202)
T ss_dssp EEE-TT-TT-HHHHHHHHHHHHH
T ss_pred EecCCCCCCCcHHHHHHHHhhcC
Confidence 68899999999999999999886
No 392
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=35.70 E-value=54 Score=21.57 Aligned_cols=8 Identities=38% Similarity=0.202 Sum_probs=3.4
Q ss_pred ccchHHHH
Q 013240 4 MSKGRIWI 11 (447)
Q Consensus 4 m~~~~~~~ 11 (447)
|+|+.+.+
T Consensus 1 MmKk~i~~ 8 (48)
T PRK10081 1 MVKKTIAA 8 (48)
T ss_pred ChHHHHHH
Confidence 34443444
No 393
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.31 E-value=57 Score=29.46 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=30.7
Q ss_pred hhhhhCCCccccEEEEEeCCeeEEecCCCCHHHHHHHHHHhcCC
Q 013240 108 RLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAP 151 (447)
Q Consensus 108 ~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~i~~fi~~~~~~ 151 (447)
..+++.||+++|++++ .+ ...-.|..+.+-+..-+++.+..
T Consensus 175 ~~A~e~gI~gVP~fv~-d~--~~~V~Gaq~~~v~~~al~~~~~~ 215 (225)
T COG2761 175 AAAQEMGIRGVPTFVF-DG--KYAVSGAQPYDVLEDALRQLLAE 215 (225)
T ss_pred HHHHHCCCccCceEEE-cC--cEeecCCCCHHHHHHHHHHHHhc
Confidence 4678899999999998 22 23347888888888877777654
No 394
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=35.21 E-value=2.3e+02 Score=22.57 Aligned_cols=93 Identities=10% Similarity=0.103 Sum_probs=48.8
Q ss_pred hhhcCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCceEEEE-eccchH-----------hHHhhcCCCCCCCCce
Q 013240 265 LLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASAN--RELVFCYV-GIKQFA-----------DFADTFEANKKSKLPK 330 (447)
Q Consensus 265 ~~~~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~--~~~~f~~v-d~~~~~-----------~~~~~~~i~~~~~~P~ 330 (447)
.+.-.++++++ +.++.++..+.+..+.|.+..... +++.+..+ +..... .+.+.|++ . .+.-.
T Consensus 5 ~~~w~~R~lvv-~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~-~-~~~f~ 81 (118)
T PF13778_consen 5 QFRWKNRLLVV-FAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRI-P-PGGFT 81 (118)
T ss_pred HhcCcCceEEE-ECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCC-C-CCceE
Confidence 33334455544 333445556666677777644333 34444343 333223 56677888 3 33456
Q ss_pred EEEEeCCccceecCCCCCCCcccchhHHHHHHHHH
Q 013240 331 MVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGY 365 (447)
Q Consensus 331 vvi~~~~~~y~~~~g~~~~~~~~~~~~i~~Fl~~~ 365 (447)
++++..++.-+.-. ...++.+.|...|+..
T Consensus 82 ~vLiGKDG~vK~r~-----~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 82 VVLIGKDGGVKLRW-----PEPIDPEELFDTIDAM 111 (118)
T ss_pred EEEEeCCCcEEEec-----CCCCCHHHHHHHHhCC
Confidence 67777654322211 2445677888777653
No 395
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.72 E-value=32 Score=24.91 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=17.3
Q ss_pred EEEECCCChhhhhhhHHHHHH
Q 013240 65 VDFYAPWCGHCKRLAPQLDEA 85 (447)
Q Consensus 65 V~f~~~~C~~C~~~~p~~~~~ 85 (447)
++|+|.-|+.|..+..+++++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl 25 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL 25 (85)
T ss_pred eeeccccCcchHHHHHHHHHc
Confidence 789999999998887666654
No 396
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=34.06 E-value=48 Score=26.32 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=15.2
Q ss_pred EEEEECCCChhhhhhhHHHHH
Q 013240 64 LVDFYAPWCGHCKRLAPQLDE 84 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~ 84 (447)
+..|+.|.|+.|++....+++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~ 22 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA 22 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 346779999999987654443
No 397
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=32.54 E-value=74 Score=24.90 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=34.9
Q ss_pred EECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCc--cccEEEEE-eCCe
Q 013240 67 FYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID--AFPTLKIF-MHGI 128 (447)
Q Consensus 67 f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~--~~Ptl~~~-~~g~ 128 (447)
||..+|+.|......+.+.. . ...+.|..+.-....++.+.++++ ..-+.++. .+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d----~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD----R-GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC----C-CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 78899999999877766652 1 234666555334445556677766 34444443 4454
No 398
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=32.29 E-value=2.8e+02 Score=22.71 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=41.4
Q ss_pred cCCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCC-ceEEEEeccchHhHHhhcCCCCCCCCceEEE
Q 013240 268 DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVV 333 (447)
Q Consensus 268 ~~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi 333 (447)
.....++++=|..+.++.--+.-+.|.++|.+-++ ..+..||.++-+.|.+.+.+ . .|+-+.
T Consensus 17 ~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel---~-dP~tvm 79 (133)
T PF02966_consen 17 SEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYEL---Y-DPCTVM 79 (133)
T ss_dssp H-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS-----SSEEEE
T ss_pred ccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhccccc---C-CCeEEE
Confidence 33344444444444555555667888899998888 55667899999999999998 3 675333
No 399
>PRK02655 psbI photosystem II reaction center I protein I; Provisional
Probab=31.25 E-value=58 Score=19.93 Aligned_cols=29 Identities=34% Similarity=0.596 Sum_probs=13.8
Q ss_pred eehhHHHHHHHHHHHHHhcCCCCCcCcCCCCc
Q 013240 392 SVYIIVFMVAMLMLLRTLGKDDEEPSRVGTSD 423 (447)
Q Consensus 392 ~~~~~~f~~~~~~~i~~~~~~~~~~~~~~~~~ 423 (447)
.+|+++.+.+.+++.-+.|. +|-|+|.++
T Consensus 7 ~Vy~vV~ffvsLFiFGflsn---DP~RnP~rk 35 (38)
T PRK02655 7 SVYIVVFFFVGLFVFGFLSS---DPTRNPGRK 35 (38)
T ss_pred eehhhHHHHHHHHHcccCCC---CCCCCCCcc
Confidence 34555544444444444444 344555544
No 400
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=31.01 E-value=1.5e+02 Score=25.62 Aligned_cols=10 Identities=10% Similarity=-0.044 Sum_probs=5.8
Q ss_pred HHHHHHhhcC
Q 013240 83 DEAAPILAKL 92 (447)
Q Consensus 83 ~~~a~~l~~~ 92 (447)
.++++.|++.
T Consensus 52 aqI~~SLeG~ 61 (237)
T COG3700 52 AQIENSLEGR 61 (237)
T ss_pred HHHHhhhcCC
Confidence 4566666653
No 401
>PRK09301 circadian clock protein KaiB; Provisional
Probab=30.92 E-value=1.6e+02 Score=22.95 Aligned_cols=61 Identities=13% Similarity=0.094 Sum_probs=40.1
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhCCC--ceEEEEeccchHhHHhhcCCCCCCCCceEEEEeC
Q 013240 272 KIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 336 (447)
Q Consensus 272 ~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~ 336 (447)
+.+-+++. +.........+.++++...+.. +..-.+|..++|+.++...+ --.|+++=..+
T Consensus 7 ~~LrLyVa-g~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~I---vATPTLIK~~P 69 (103)
T PRK09301 7 YILKLYVA-GNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKI---LATPTLAKILP 69 (103)
T ss_pred EEEEEEEe-CCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCe---EEecHHhhcCC
Confidence 33334444 3444556666777777776543 77777899999999999887 55676544433
No 402
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=30.82 E-value=84 Score=27.80 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=29.4
Q ss_pred cchhhhhhCCCccccEEEEEeCCeeEEecCCCCHHHHHHHHH
Q 013240 105 KYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLK 146 (447)
Q Consensus 105 ~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~i~~fi~ 146 (447)
-+|.+.++|+|+.+|++++...+..-.-.|..+...-.+.+.
T Consensus 150 IDP~lF~~F~I~~VPafVv~C~~~yD~I~GNIsl~~ALe~iA 191 (212)
T PRK13730 150 IDPTLFSQYGIRSVPALVVFCSQGYDIIRGNLRVGQALEKVA 191 (212)
T ss_pred ECHHHHHhcCCccccEEEEEcCCCCCEEEecccHHHHHHHHH
Confidence 369999999999999999975532223467666655444444
No 403
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=30.72 E-value=6.4e+02 Score=26.32 Aligned_cols=78 Identities=13% Similarity=0.055 Sum_probs=48.6
Q ss_pred CCCeEEeChhhHHHhHccCCeEEEEEECCCC-h-hhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhh--------hh
Q 013240 42 DGKVIELDESNFDSAISSFDYILVDFYAPWC-G-HCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL--------AS 111 (447)
Q Consensus 42 ~~~v~~l~~~~f~~~~~~~~~~lV~f~~~~C-~-~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l--------~~ 111 (447)
.+.+..|++.+-+-+=+=++|+-|.+|.+.- + .-..+....+++-++++..+++|.+-.+|-..+++. +.
T Consensus 29 ~~k~ytLS~~T~~~L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~~~~e~~~~~~~~~ 108 (552)
T TIGR03521 29 EDKRYTLSPASKEVVKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEEEDEQGEEILDSLA 108 (552)
T ss_pred CCCceecCHHHHHHHHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHHHHHHH
Confidence 3678889887765544445777776664432 1 223444555556566655556699999998766433 34
Q ss_pred hCCCcccc
Q 013240 112 KQEIDAFP 119 (447)
Q Consensus 112 ~~~i~~~P 119 (447)
++||...+
T Consensus 109 ~~gi~~~~ 116 (552)
T TIGR03521 109 QYGIKPAN 116 (552)
T ss_pred HcCCCcce
Confidence 47887655
No 404
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=30.71 E-value=2.3e+02 Score=25.25 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=42.7
Q ss_pred CChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccchhhhhhCCCccccEEEEEeCCeeEEecCCCCHHHHHHHHHHhcC
Q 013240 71 WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVA 150 (447)
Q Consensus 71 ~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~i~~fi~~~~~ 150 (447)
.|+.|+++.-.+. +++ .+..+-.||...-++-.+...-.+-|-++.|.+ .+....+.|.+|+++.++
T Consensus 20 dcpf~qr~~m~L~-----~k~--~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~------~~~tDs~~Ie~~Lee~l~ 86 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE-----LKG--VPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDE------KWVTDSDKIEEFLEEKLP 86 (221)
T ss_pred CChhHHHHHHHHH-----HcC--CCceEEEeecCCCcHHHHhhCCCCCCCeEEeCC------ceeccHHHHHHHHHHhcC
Confidence 4888877754444 233 258889999988877766554444333333332 223456788889888876
Q ss_pred CC
Q 013240 151 PD 152 (447)
Q Consensus 151 ~~ 152 (447)
++
T Consensus 87 ~p 88 (221)
T KOG1422|consen 87 PP 88 (221)
T ss_pred CC
Confidence 54
No 405
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=30.65 E-value=82 Score=26.86 Aligned_cols=29 Identities=17% Similarity=0.455 Sum_probs=19.6
Q ss_pred ccCCeEEEEEE----CCCCh--hhhhhhHHHHHHHH
Q 013240 58 SSFDYILVDFY----APWCG--HCKRLAPQLDEAAP 87 (447)
Q Consensus 58 ~~~~~~lV~f~----~~~C~--~C~~~~p~~~~~a~ 87 (447)
..++++++.|| .|.|. .| .|+..|+++..
T Consensus 88 t~nk~vV~f~YP~asTPGCTkQaC-gFRDnY~k~kk 122 (211)
T KOG0855|consen 88 TGNKPVVLFFYPAASTPGCTKQAC-GFRDNYEKFKK 122 (211)
T ss_pred cCCCcEEEEEeccCCCCCcccccc-cccccHHHHhh
Confidence 45668888898 46773 45 66666666654
No 406
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=30.44 E-value=3.3e+02 Score=22.88 Aligned_cols=84 Identities=11% Similarity=0.140 Sum_probs=48.8
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCceEEEEeccc-----h-------HhHH-hhc---CCCCCCCCceEEEE
Q 013240 271 RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQ-----F-------ADFA-DTF---EANKKSKLPKMVVW 334 (447)
Q Consensus 271 ~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~-----~-------~~~~-~~~---~i~~~~~~P~vvi~ 334 (447)
.+.++.|.. ....--.+....|.++++++. +.+..|+.++ + .... ..+ ++ ...|+.+++
T Consensus 51 ~~~lvnFWA-sWCppCr~e~P~L~~l~~~~~-~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v---~~iPTt~LI 125 (153)
T TIGR02738 51 DYALVFFYQ-STCPYCHQFAPVLKRFSQQFG-LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRP---VVTPATFLV 125 (153)
T ss_pred CCEEEEEEC-CCChhHHHHHHHHHHHHHHcC-CcEEEEEeCCCcccccccccCCchHHHHHHhccCCC---CCCCeEEEE
Confidence 445666664 455556667788888888874 3443433322 1 1122 223 33 678999999
Q ss_pred eCCcc--ceecCCCCCCCcccchhHHHHHHHHH
Q 013240 335 DGNEN--YLTVIGSESIDEEDQGSQISRFLEGY 365 (447)
Q Consensus 335 ~~~~~--y~~~~g~~~~~~~~~~~~i~~Fl~~~ 365 (447)
+.++. +.... +..+.+.+.+.+...
T Consensus 126 D~~G~~i~~~~~------G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 126 NVNTRKAYPVLQ------GAVDEAELANRMDEI 152 (153)
T ss_pred eCCCCEEEEEee------cccCHHHHHHHHHHh
Confidence 99743 33343 344566777776654
No 407
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=29.95 E-value=95 Score=18.88 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=8.8
Q ss_pred ehhHHHHHHHHHHHHHhcC
Q 013240 393 VYIIVFMVAMLMLLRTLGK 411 (447)
Q Consensus 393 ~~~~~f~~~~~~~i~~~~~ 411 (447)
+|+++.+.+.+++.-+.|.
T Consensus 8 Vy~vV~ffv~LFifGflsn 26 (36)
T PF02532_consen 8 VYTVVIFFVSLFIFGFLSN 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred ehhhHHHHHHHHhccccCC
Confidence 3444444444444445554
No 408
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=29.87 E-value=1.1e+02 Score=25.97 Aligned_cols=55 Identities=25% Similarity=0.468 Sum_probs=32.2
Q ss_pred ccEEEeecCChhHHHHHHHHhhhhhHhHHh--hccchhhhhhcCCCCCCeEEEEcCCC
Q 013240 173 FPLFIGFGLDESVMSNLALKYKKKAWFAVA--KDFSEDTMVLYDFDKVPALVALQPSY 228 (447)
Q Consensus 173 ~~~vi~f~~~~~~~~~~a~~~~~~~~f~~~--~~~~~~~~~~~~i~~~P~l~~~~~~~ 228 (447)
.++||....+...+...-.... -.|..+- ++..+++..+|++.+.|++++.++++
T Consensus 70 EVvfVS~D~~~~~~~~y~~~~~-~~W~~iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG 126 (157)
T KOG2501|consen 70 EVVFVSSDRDEESLDEYMLEHH-GDWLAIPFGDDLIQKLSEKYEVKGIPALVILKPDG 126 (157)
T ss_pred EEEEEecCCCHHHHHHHHHhcC-CCeEEecCCCHHHHHHHHhcccCcCceeEEecCCC
Confidence 3455555444433333222221 2343333 33457788999999999999998854
No 409
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=29.53 E-value=1.7e+02 Score=22.01 Aligned_cols=57 Identities=12% Similarity=0.088 Sum_probs=38.3
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhCCC--ceEEEEeccchHhHHhhcCCCCCCCCceEEEEeC
Q 013240 276 AIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 336 (447)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~ 336 (447)
+++. +.........+.++++.+.+.. +..-.+|..++|+.++...+ --.|+++=..+
T Consensus 8 Lyva-g~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~I---vATPtLIK~~P 66 (87)
T TIGR02654 8 LYVA-GNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKI---LATPTLSKILP 66 (87)
T ss_pred EEEe-CCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCE---EEecHHhhcCC
Confidence 3444 3444555666777777776543 77777899999999999887 55676644433
No 410
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=28.38 E-value=70 Score=29.10 Aligned_cols=39 Identities=15% Similarity=0.127 Sum_probs=29.1
Q ss_pred chhhhhhCCCccccEEEEEeCCeeEEecCCCCHHHHHHHHHHh
Q 013240 106 YSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKF 148 (447)
Q Consensus 106 ~~~l~~~~~i~~~Ptl~~~~~g~~~~y~g~~~~~~i~~fi~~~ 148 (447)
+..+++++|+.++|++++-.. .|.|....++|.+.+...
T Consensus 204 ~~~~a~~~gv~gTPt~~v~~~----~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 204 NYKLAQQLGVNGTPTFIVNGK----LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHHHhcCCCcCCeEEECCe----eecCCCCHHHHHHHHHHh
Confidence 345778899999999987332 677888788887776654
No 411
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=28.10 E-value=74 Score=27.01 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=18.3
Q ss_pred chhhhhhCCCccccEEEEEeCCeeE
Q 013240 106 YSRLASKQEIDAFPTLKIFMHGIPT 130 (447)
Q Consensus 106 ~~~l~~~~~i~~~Ptl~~~~~g~~~ 130 (447)
+.+.+.++||.++||+++ +|+..
T Consensus 132 ~~~~~~~~gi~gTPt~iI--nG~~~ 154 (178)
T cd03019 132 AEKLAKKYKITGVPAFVV--NGKYV 154 (178)
T ss_pred HHHHHHHcCCCCCCeEEE--CCEEE
Confidence 356788999999999997 67544
No 412
>PLN03207 stomagen; Provisional
Probab=27.98 E-value=67 Score=24.48 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=8.4
Q ss_pred cCCeEEEEEECCCCh
Q 013240 59 SFDYILVDFYAPWCG 73 (447)
Q Consensus 59 ~~~~~lV~f~~~~C~ 73 (447)
..+-.+|--.||-|.
T Consensus 63 ~srr~~igs~aptct 77 (113)
T PLN03207 63 SSRRLMIGSTAPTCT 77 (113)
T ss_pred hhhhhhhcCcCCccc
Confidence 345556666666653
No 413
>CHL00024 psbI photosystem II protein I
Probab=27.69 E-value=98 Score=18.81 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=13.1
Q ss_pred eehhHHHHHHHHHHHHHhcCCCCCcCcCCCCc
Q 013240 392 SVYIIVFMVAMLMLLRTLGKDDEEPSRVGTSD 423 (447)
Q Consensus 392 ~~~~~~f~~~~~~~i~~~~~~~~~~~~~~~~~ 423 (447)
.+|+++.+.+.+++.-+.|. ++-|+|.++
T Consensus 7 ~Vy~vV~ffvsLFifGFlsn---Dp~RnP~rk 35 (36)
T CHL00024 7 FVYTVVIFFVSLFIFGFLSN---DPGRNPGRK 35 (36)
T ss_pred eehhHHHHHHHHHHccccCC---CCCCCCCCC
Confidence 34555544444444444443 344444443
No 414
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=26.78 E-value=98 Score=28.46 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=8.3
Q ss_pred HHhhhcCCCcEEEEEEe
Q 013240 263 LNLLKDDKRKIVLAIVE 279 (447)
Q Consensus 263 ~~~~~~~~~~~vl~~~~ 279 (447)
++.+...+..++++..+
T Consensus 235 lEqLa~~nPd~mil~t~ 251 (310)
T COG4594 235 LEQLAAINPDVMILATY 251 (310)
T ss_pred HHHHhcCCCCEEEEEec
Confidence 45555444445554543
No 415
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=25.15 E-value=34 Score=27.91 Aligned_cols=8 Identities=50% Similarity=0.982 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 013240 399 MVAMLMLL 406 (447)
Q Consensus 399 ~~~~~~~i 406 (447)
|+++++++
T Consensus 9 i~~i~l~~ 16 (130)
T PF12273_consen 9 IVAILLFL 16 (130)
T ss_pred HHHHHHHH
Confidence 33333333
No 416
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=25.03 E-value=2.4e+02 Score=22.30 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=18.9
Q ss_pred cchhhhhhcCCCCCCeEEEEcCCCC
Q 013240 205 FSEDTMVLYDFDKVPALVALQPSYN 229 (447)
Q Consensus 205 ~~~~~~~~~~i~~~P~l~~~~~~~~ 229 (447)
....+...|++...|+.+++.++..
T Consensus 93 ~~~~~~~~~~v~~~P~~~vid~~G~ 117 (126)
T cd03012 93 NDYATWRAYGNQYWPALYLIDPTGN 117 (126)
T ss_pred CchHHHHHhCCCcCCeEEEECCCCc
Confidence 3456777889988999999976533
No 417
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=24.92 E-value=2.9e+02 Score=26.89 Aligned_cols=75 Identities=20% Similarity=0.224 Sum_probs=44.2
Q ss_pred CChhhhhhhHHH----HHHHHHhhcCCCCeEEEEEeCc-cchhhhh--hCCCcc-ccEEEEEeCCeeEE-ecCCCCHHHH
Q 013240 71 WCGHCKRLAPQL----DEAAPILAKLKEPIVIAKVDAD-KYSRLAS--KQEIDA-FPTLKIFMHGIPTE-YYGPRKAELL 141 (447)
Q Consensus 71 ~C~~C~~~~p~~----~~~a~~l~~~~~~v~~~~Vd~~-~~~~l~~--~~~i~~-~Ptl~~~~~g~~~~-y~g~~~~~~i 141 (447)
-|+-|.+-.-.. .++.+.+.+...++.++...|. +.+.-++ .+||.+ -+...+|.+|+.+. ..+..-.+.+
T Consensus 270 sCPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l 349 (360)
T PRK00366 270 SCPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEEL 349 (360)
T ss_pred ECCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHH
Confidence 355565544333 4444455555557999999995 5544433 467664 56778899998876 4444333344
Q ss_pred HHHH
Q 013240 142 VRYL 145 (447)
Q Consensus 142 ~~fi 145 (447)
.+-+
T Consensus 350 ~~~i 353 (360)
T PRK00366 350 EAEI 353 (360)
T ss_pred HHHH
Confidence 3333
No 418
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=24.61 E-value=2.1e+02 Score=32.61 Aligned_cols=44 Identities=9% Similarity=0.082 Sum_probs=34.3
Q ss_pred hhhhhhcCCCCCCeEEEEcCCCCCcccccCCCChHHHHHHHHhh
Q 013240 207 EDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 250 (447)
Q Consensus 207 ~~~~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~fI~~~ 250 (447)
..+..+|++...|+.+++.++.+....+.|....+.|.++|...
T Consensus 492 ~~~~~~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 492 MYLWRELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred hHHHHhcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHH
Confidence 35667899999999999977655555577888888888888665
No 419
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=24.11 E-value=81 Score=27.28 Aligned_cols=26 Identities=31% Similarity=0.639 Sum_probs=23.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHh
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPIL 89 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l 89 (447)
+..|+.+.|+.|-...+.+.++.+.+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~ 28 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEY 28 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHh
Confidence 56788999999999999999999887
No 420
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=23.72 E-value=16 Score=25.68 Aligned_cols=20 Identities=10% Similarity=0.247 Sum_probs=16.3
Q ss_pred ceehhHHHHHHHHHHHHHhc
Q 013240 391 RSVYIIVFMVAMLMLLRTLG 410 (447)
Q Consensus 391 ~~~~~~~f~~~~~~~i~~~~ 410 (447)
-.+.+++|+|++..+++++.
T Consensus 40 ~~L~l~iFVV~Gs~ifqiir 59 (63)
T PF06624_consen 40 WLLGLFIFVVCGSAIFQIIR 59 (63)
T ss_pred HHHhhhheeeEcHHHHHHHH
Confidence 36677889999999998874
No 421
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=23.61 E-value=95 Score=26.74 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=28.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeC
Q 013240 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~ 103 (447)
+..|+..-|++|-...+.+.++.+.+.+. .|...-+..
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~--~i~~~p~~l 39 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDV--EIEWRPFPL 39 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTC--EEEEEEESS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCC--cEEEecccc
Confidence 67888999999999999999999887332 244444443
No 422
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=23.23 E-value=3.9e+02 Score=21.28 Aligned_cols=93 Identities=16% Similarity=0.076 Sum_probs=52.9
Q ss_pred HHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEE-eCccch-----------hhhhhCCCc--ccc
Q 013240 54 DSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV-DADKYS-----------RLASKQEID--AFP 119 (447)
Q Consensus 54 ~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~V-d~~~~~-----------~l~~~~~i~--~~P 119 (447)
++..-.+++++|.-=++.-+.-+.....+.+....|..- ++.+..+ +-.... .+-++|++. ++-
T Consensus 4 ~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR--di~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~ 81 (118)
T PF13778_consen 4 DQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDER--DIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFT 81 (118)
T ss_pred hHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccC--ceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceE
Confidence 334444555444222344555566666666655555442 3555554 333333 677888855 333
Q ss_pred EEEEEeCCee-EEecCCCCHHHHHHHHHHh
Q 013240 120 TLKIFMHGIP-TEYYGPRKAELLVRYLKKF 148 (447)
Q Consensus 120 tl~~~~~g~~-~~y~g~~~~~~i~~fi~~~ 148 (447)
.+++=++|.. ..+.++.+.+.|.+.|...
T Consensus 82 ~vLiGKDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 82 VVLIGKDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred EEEEeCCCcEEEecCCCCCHHHHHHHHhCC
Confidence 4444456654 4589999999998887654
No 423
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=22.83 E-value=79 Score=28.72 Aligned_cols=39 Identities=13% Similarity=0.156 Sum_probs=28.8
Q ss_pred chhhhhhcCCCCCCeEEEEcCCCCCcccccCCCChHHHHHHHHhh
Q 013240 206 SEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 250 (447)
Q Consensus 206 ~~~~~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~fI~~~ 250 (447)
+..+...+++.+.|++++-. . .+.|....+.|...|...
T Consensus 204 ~~~~a~~~gv~gTPt~~v~~-----~-~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 204 NYKLAQQLGVNGTPTFIVNG-----K-LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHHHhcCCCcCCeEEECC-----e-eecCCCCHHHHHHHHHHh
Confidence 35577788999999988842 1 677777778888877653
No 424
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=22.73 E-value=3.5e+02 Score=20.60 Aligned_cols=76 Identities=16% Similarity=0.192 Sum_probs=43.6
Q ss_pred CCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCceEEEEeccchHhHHhhcCCCCCCCCceEEEEeCCccc-eecCCCC
Q 013240 269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENY-LTVIGSE 347 (447)
Q Consensus 269 ~~~~~vl~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~~i~~~~~~P~vvi~~~~~~y-~~~~g~~ 347 (447)
-.+|+.+.++.+.+ +..++..+.++.+|.-..++.+...+.. ...|++++.+.++.+ -.+.
T Consensus 17 l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~--------------~~~P~~~i~~~~~~~gIrF~--- 78 (94)
T cd02974 17 LENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDD--------------ERKPSFSINRPGEDTGIRFA--- 78 (94)
T ss_pred CCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCC--------------CCCCEEEEecCCCcccEEEE---
Confidence 34676665554433 6667777888888888877666432211 246999988664211 1122
Q ss_pred CCCcccchhHHHHHHHHH
Q 013240 348 SIDEEDQGSQISRFLEGY 365 (447)
Q Consensus 348 ~~~~~~~~~~i~~Fl~~~ 365 (447)
+-+...++..|+.++
T Consensus 79 ---GiP~GhEf~Slilai 93 (94)
T cd02974 79 ---GIPMGHEFTSLVLAL 93 (94)
T ss_pred ---ecCCchhHHHHHHHh
Confidence 223344677777654
No 425
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=22.66 E-value=1e+02 Score=26.22 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=9.7
Q ss_pred CCCccchHHHHHHHHHHHH
Q 013240 1 MRGMSKGRIWILLCLLLLT 19 (447)
Q Consensus 1 ~~~m~~~~~~~~~~ll~~~ 19 (447)
|...+++++|+++++++.+
T Consensus 1 M~~~~~rRl~~~~~~~~~~ 19 (160)
T PRK13165 1 MNPRRKKRLWLACAVLAGL 19 (160)
T ss_pred CCccchhhHHHHHHHHHHH
Confidence 5445555655555444444
No 426
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=22.54 E-value=97 Score=24.80 Aligned_cols=21 Identities=24% Similarity=0.601 Sum_probs=16.1
Q ss_pred EEEEECCCChhhhhhhHHHHH
Q 013240 64 LVDFYAPWCGHCKRLAPQLDE 84 (447)
Q Consensus 64 lV~f~~~~C~~C~~~~p~~~~ 84 (447)
+..|+.|.|+.|+.....+++
T Consensus 3 itiy~~p~C~t~rka~~~L~~ 23 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE 23 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 456779999999988666554
No 427
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=22.38 E-value=67 Score=28.51 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=17.4
Q ss_pred hhhhhhCCCccccEEEEEeCCeeE
Q 013240 107 SRLASKQEIDAFPTLKIFMHGIPT 130 (447)
Q Consensus 107 ~~l~~~~~i~~~Ptl~~~~~g~~~ 130 (447)
.+.++++||+++|++++ +|+..
T Consensus 157 ~~~a~~~gI~gtPtfiI--nGky~ 178 (207)
T PRK10954 157 EKAAADLQLRGVPAMFV--NGKYM 178 (207)
T ss_pred HHHHHHcCCCCCCEEEE--CCEEE
Confidence 45678899999999998 67653
No 428
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=22.26 E-value=5.6e+02 Score=22.75 Aligned_cols=106 Identities=9% Similarity=0.060 Sum_probs=58.5
Q ss_pred hhhcCCCCCCeEEEEcCCCCCcccccCCCChHHHHHHHHhhCCC--CccccCh--------hhHHhhh---cCCCcEEEE
Q 013240 210 MVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLP--LSVPINQ--------DTLNLLK---DDKRKIVLA 276 (447)
Q Consensus 210 ~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~i~~fI~~~~~p--~~~~l~~--------~~~~~~~---~~~~~~vl~ 276 (447)
+.+++-++.=.+.+|.. ...-.++.+.++...||...... .+..+-. .....+. ....|..++
T Consensus 34 A~~~DdDG~i~v~~Fs~----~~~~~~~vt~~~~~~~v~~~~~~~~~~~~~G~t~y~~vm~~v~~~y~~~~~~~~P~~Vl 109 (200)
T PF10138_consen 34 AAQFDDDGEIDVWFFST----EFDRLPDVTLDNYEGYVDELHAGLPDWGRMGGTNYAPVMEDVLDHYFKREPSDAPALVL 109 (200)
T ss_pred HhhcCCCCceEEEEeCC----CCCcCCCcCHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHhhcCCCCCCeEEE
Confidence 33455444333455532 23335678889999999876332 2222221 2223333 334588888
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCCCceEEEEeccchHhHHhhc
Q 013240 277 IVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTF 320 (447)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~ 320 (447)
|..|....+..+..+.|++++..---..|+-+...+ -.|++.+
T Consensus 110 FiTDG~~~~~~~~~~~i~~as~~pifwqFVgiG~~~-f~fL~kL 152 (200)
T PF10138_consen 110 FITDGGPDDRRAIEKLIREASDEPIFWQFVGIGDSN-FGFLEKL 152 (200)
T ss_pred EEecCCccchHHHHHHHHhccCCCeeEEEEEecCCc-chHHHHh
Confidence 887777777777777777763322125566555544 4566666
No 429
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=22.19 E-value=4.9e+02 Score=22.07 Aligned_cols=75 Identities=12% Similarity=0.209 Sum_probs=42.9
Q ss_pred CeEEeChhhHHHhHccCCeEEEEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCccc-----------hhhhh-
Q 013240 44 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-----------SRLAS- 111 (447)
Q Consensus 44 ~v~~l~~~~f~~~~~~~~~~lV~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~-----------~~l~~- 111 (447)
.+..++.+.+.-.-=..+.+||-=+|+-|+.-..+ ..++.+.+.+++.+ +.+...-|... .++|+
T Consensus 9 ~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~~G--f~VLgFPcNQF~~QEPg~~eEI~~fC~~ 85 (162)
T COG0386 9 SVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQY-EGLEALYKKYKDKG--FEVLGFPCNQFGGQEPGSDEEIAKFCQL 85 (162)
T ss_pred eeeccCCCCccHHHhCCcEEEEEEcccccCCcHhH-HHHHHHHHHHhhCC--cEEEeccccccccCCCCCHHHHHHHHHh
Confidence 34444443333222356888888899988865422 34445555555443 66777777432 45777
Q ss_pred hCCCccccEEE
Q 013240 112 KQEIDAFPTLK 122 (447)
Q Consensus 112 ~~~i~~~Ptl~ 122 (447)
.||++ +|-+-
T Consensus 86 ~YgVt-Fp~f~ 95 (162)
T COG0386 86 NYGVT-FPMFS 95 (162)
T ss_pred ccCce-eeeee
Confidence 46665 55544
No 430
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=21.99 E-value=68 Score=27.77 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=19.1
Q ss_pred chhhhhhCCCccccEEEEEeCCe
Q 013240 106 YSRLASKQEIDAFPTLKIFMHGI 128 (447)
Q Consensus 106 ~~~l~~~~~i~~~Ptl~~~~~g~ 128 (447)
+.+.+.+.||.|+|++++..++.
T Consensus 158 ~~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 158 DQKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHHcCCCccCEEEEEeCCe
Confidence 35667889999999999998764
No 431
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=21.37 E-value=1.1e+02 Score=25.60 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=9.6
Q ss_pred CCCccchHHHHHHHHHHHHHH
Q 013240 1 MRGMSKGRIWILLCLLLLTGR 21 (447)
Q Consensus 1 ~~~m~~~~~~~~~~ll~~~~~ 21 (447)
|++-+++++++++++++++++
T Consensus 1 m~~~~~~rl~~~~~~~~~~~~ 21 (148)
T PRK13254 1 MMKRKRRRLLIILGALAALGL 21 (148)
T ss_pred CCccchhHHHHHHHHHHHHHH
Confidence 444344455555444444433
No 432
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=21.27 E-value=69 Score=20.99 Aligned_cols=17 Identities=6% Similarity=0.296 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHhcC
Q 013240 395 IIVFMVAMLMLLRTLGK 411 (447)
Q Consensus 395 ~~~f~~~~~~~i~~~~~ 411 (447)
+++|++++++++++++.
T Consensus 16 v~~~~~F~gi~~w~~~~ 32 (49)
T PF05545_consen 16 VLFFVFFIGIVIWAYRP 32 (49)
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 45668888888888876
No 433
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=21.11 E-value=4.7e+02 Score=21.44 Aligned_cols=100 Identities=23% Similarity=0.266 Sum_probs=58.3
Q ss_pred CeEEe-ChhhHHHhHc-cCCeEEEEEECCCChhhh--hhhHHHHHHHHHhhcCCCCeEEEEEeCccchhh---hhhCC--
Q 013240 44 KVIEL-DESNFDSAIS-SFDYILVDFYAPWCGHCK--RLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL---ASKQE-- 114 (447)
Q Consensus 44 ~v~~l-~~~~f~~~~~-~~~~~lV~f~~~~C~~C~--~~~p~~~~~a~~l~~~~~~v~~~~Vd~~~~~~l---~~~~~-- 114 (447)
...+| |.+..+++++ +....||.. .+-|| |. ..+|.-..+... .. .+=.+..|=+..+++- ++.|=
T Consensus 17 Gf~eL~T~e~Vd~~~~~~~GTtlVvV-NSVCG-CAag~ARPa~~~al~~-~k--kPD~lvTVFAGqDkEAt~~aR~yf~~ 91 (136)
T PF06491_consen 17 GFEELTTAEEVDEALKNKEGTTLVVV-NSVCG-CAAGNARPAAAMALQN-DK--KPDHLVTVFAGQDKEATAKAREYFEP 91 (136)
T ss_dssp T-EE--SHHHHHHHHHH--SEEEEEE-E-SSH-HHHHTHHHHHHHHHHH-SS----SEEEEEETTTSHHHHHHHHHTSTT
T ss_pred CccccCCHHHHHHHHhCCCCcEEEEE-ecccc-ccccccCHHHHHHHhC-CC--CCCceEEeccCCCHHHHHHHHHhcCC
Confidence 34455 6788899997 666666666 45687 54 356766655543 22 2344566666655443 44442
Q ss_pred -CccccEEEEEeCCeeEEe-----cCCCCHHHHHHHHHHh
Q 013240 115 -IDAFPTLKIFMHGIPTEY-----YGPRKAELLVRYLKKF 148 (447)
Q Consensus 115 -i~~~Ptl~~~~~g~~~~y-----~g~~~~~~i~~fi~~~ 148 (447)
--+-|++-+|++|+.+.+ ...++++.|.+-+...
T Consensus 92 ~pPSSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~a 131 (136)
T PF06491_consen 92 YPPSSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDA 131 (136)
T ss_dssp S---SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHH
T ss_pred CCCCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHH
Confidence 336799999999998754 4578888887766543
No 434
>PRK13620 psbV cytochrome c-550; Provisional
Probab=21.11 E-value=1e+02 Score=27.30 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=21.3
Q ss_pred cccCCCCeEEeChhhHHHhHccCCeEEEEEECCCChhhh
Q 013240 38 KFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCK 76 (447)
Q Consensus 38 ~~~~~~~v~~l~~~~f~~~~~~~~~~lV~f~~~~C~~C~ 76 (447)
..+.++..+.++.++..+ ..+. | ..||..|+
T Consensus 89 ~ln~~G~tvtfS~eq~~~---GkqL----F-~~~Ca~CH 119 (215)
T PRK13620 89 KLNPQGDNVTLSLKQVAE---GKQL----F-AYACGQCH 119 (215)
T ss_pred eeCCCCCeecCCHHHHHH---HHHH----H-Hhhhhhcc
Confidence 345567888888887665 2221 2 77999997
No 435
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.07 E-value=1.7e+02 Score=24.81 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=27.6
Q ss_pred chhhhhhcCCCCCCeEEEEcCCCCCcccccCCCChHH
Q 013240 206 SEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEF 242 (447)
Q Consensus 206 ~~~~~~~~~i~~~P~l~~~~~~~~~~~~~~g~~~~~~ 242 (447)
.++++..|++.+.|++++|...++.-....|-+..+.
T Consensus 104 ~~ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~ 140 (182)
T COG2143 104 TEELAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQ 140 (182)
T ss_pred HHHHHHHhccccCceEEEEcCCCCEEEecCCCCCHHH
Confidence 4678889999999999999876555555566666543
No 436
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=21.05 E-value=1.2e+02 Score=22.59 Aligned_cols=8 Identities=38% Similarity=0.592 Sum_probs=4.0
Q ss_pred ccchHHHH
Q 013240 4 MSKGRIWI 11 (447)
Q Consensus 4 m~~~~~~~ 11 (447)
|++.++++
T Consensus 1 MKK~kii~ 8 (85)
T PF11337_consen 1 MKKKKIIL 8 (85)
T ss_pred CCchHHHH
Confidence 66644443
No 437
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=20.91 E-value=2.6e+02 Score=19.18 Aligned_cols=52 Identities=17% Similarity=0.230 Sum_probs=29.9
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEeCc----cchhhhhhCCCccccEEEE
Q 013240 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD----KYSRLASKQEIDAFPTLKI 123 (447)
Q Consensus 65 V~f~~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd~~----~~~~l~~~~~i~~~Ptl~~ 123 (447)
..|+.+.|+.|.+..-.+... + -+.....++.. ...++.+...-..+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~-----~--~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALL-----G--IPYEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHc-----C--CCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 457789999998775444432 2 12444445532 2234444455567899864
No 438
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=20.87 E-value=1.3e+02 Score=22.20 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCCcccc-cCCCChHHHHHHHHhhC
Q 013240 217 KVPALVALQPSYNEHNIF-YGPFDEEFLEEFIKQNF 251 (447)
Q Consensus 217 ~~P~l~~~~~~~~~~~~~-~g~~~~~~i~~fI~~~~ 251 (447)
..|.|+++...++..... ..+|+.+.|.+|+.+..
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 459999988655543333 36899999999998764
No 439
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=20.72 E-value=2.5e+02 Score=25.66 Aligned_cols=10 Identities=10% Similarity=-0.044 Sum_probs=5.7
Q ss_pred HHHHHHhhcC
Q 013240 83 DEAAPILAKL 92 (447)
Q Consensus 83 ~~~a~~l~~~ 92 (447)
+++++.|++.
T Consensus 52 ~~~~~~~~~~ 61 (237)
T TIGR01672 52 AQIENSLEGR 61 (237)
T ss_pred HHHHHhcCCC
Confidence 4566666654
No 440
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=20.72 E-value=2e+02 Score=24.86 Aligned_cols=43 Identities=21% Similarity=0.338 Sum_probs=29.6
Q ss_pred CCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhcCCCCeEEEEEe
Q 013240 60 FDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102 (447)
Q Consensus 60 ~~~~lV~f~-~~~C~~C~~~~p~~~~~a~~l~~~~~~v~~~~Vd 102 (447)
.++++..|| -++---|-.---.|...+.+++..+-.|..+.+|
T Consensus 33 gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~D 76 (196)
T KOG0852|consen 33 GKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTD 76 (196)
T ss_pred ccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEecc
Confidence 367777777 3455566666667888888888877666666666
No 441
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=20.58 E-value=68 Score=27.76 Aligned_cols=18 Identities=22% Similarity=0.349 Sum_probs=10.6
Q ss_pred eehhHHHHHHHHHHHHHh
Q 013240 392 SVYIIVFMVAMLMLLRTL 409 (447)
Q Consensus 392 ~~~~~~f~~~~~~~i~~~ 409 (447)
.+++++|+++|+++|.+|
T Consensus 81 ivgvi~~Vi~Iv~~Iv~~ 98 (179)
T PF13908_consen 81 IVGVICGVIAIVVLIVCF 98 (179)
T ss_pred eeehhhHHHHHHHhHhhh
Confidence 455666666665555544
Done!