BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013241
(447 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VPQ|A Chain A, Crystal Structure Of Biotin Carboxylase From S. Aureus
Complexed With Amppnp
pdb|2VPQ|B Chain B, Crystal Structure Of Biotin Carboxylase From S. Aureus
Complexed With Amppnp
Length = 451
Score = 325 bits (834), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 158/305 (51%), Positives = 221/305 (72%), Gaps = 1/305 (0%)
Query: 120 IEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLE 179
+ EA K+A ++G+PV+IKATAGGGG+G+R+A++ E + + EA AFGN G+Y+E
Sbjct: 140 VSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYME 199
Query: 180 KYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXX 239
K+++N RHIE Q++ D YGNV+H GERDC+IQRR QKL+EEAPSP L E R+ MG+
Sbjct: 200 KFIENFRHIEIQIVGDSYGNVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAV 259
Query: 240 XXXXSIGYIGVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGG 298
++ Y GT+EF+ D FYFMEMNTRIQVEHPVTEM++ +DL++ Q+ VAMG
Sbjct: 260 RAAKAVNYENAGTIEFIYDLNDNKFYFMEMNTRIQVEHPVTEMVTGIDLVKLQLQVAMGD 319
Query: 299 KLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVP 358
L YKQEDI L GH+IE RINAE+P+KNF P PG+I YL GG VR++S Y +Y +P
Sbjct: 320 VLPYKQEDIKLTGHAIEFRINAENPYKNFMPSPGKIEQYLAPGGYGVRIESACYTNYTIP 379
Query: 359 PSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTA 418
P YDS++ KLI+ PTR++AI RAL++ ++ G+ TTI +H +L+ + F++GK +T
Sbjct: 380 PYYDSMVAKLIIHEPTRDEAIMAGIRALSEFVVLGIDTTIPFHIKLLNNDIFRSGKFNTN 439
Query: 419 FIPKH 423
F+ ++
Sbjct: 440 FLEQN 444
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELG 131
+K+L+ANRGEIAVR+IR ++GI VA+YS DKDALH ++ADE+ C+ + L
Sbjct: 2 KKVLIANRGEIAVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTLSKDSYLN 61
Query: 132 FPVMIKATAGGGGRGM 147
P ++ G G+
Sbjct: 62 IPNILSIATSTGCDGV 77
>pdb|2GPW|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|C Chain C, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|D Chain D, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 309 bits (792), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 164/339 (48%), Positives = 227/339 (66%), Gaps = 13/339 (3%)
Query: 84 VRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGG 143
V I + G+PCV D L D+ +++ +A +G+PV+IKA+ GGG
Sbjct: 137 VSAIAAMKKAGVPCVP-----GSDG---PLGDD---MDKNRAIAKRIGYPVIIKASGGGG 185
Query: 144 GRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 203
GRGMR+ + E + + ++EA AAF ND VY+EKY++NPRH+E QVLAD GN ++
Sbjct: 186 GRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYL 245
Query: 204 GERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSF 263
ERDCS+QRR+QK++EEAP+P +TPELR+ +G+ IGY G GT EFL E G F
Sbjct: 246 AERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEF 304
Query: 264 YFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDP 323
YF+EMNTRIQVEHPVTEMI+ VDLI+EQ+ +A G L KQE++ ++GH++ECRINAEDP
Sbjct: 305 YFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP 364
Query: 324 FKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMK 383
F P PG+IT + GG VR +SH+Y Y VPP YDS++GKLI + R+ AI RMK
Sbjct: 365 -NTFLPSPGKITRFHAPGGAGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMK 423
Query: 384 RALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPK 422
AL + II G+ T ++ I++ E+F++G + ++ K
Sbjct: 424 NALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEK 462
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELG 131
+KI++ANRGEIA+R++R E+GI VAV+S+ D+D HV LADE+VCI A + L
Sbjct: 23 DKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 82
Query: 132 FPVMIKAT 139
P +I A
Sbjct: 83 IPAIISAA 90
>pdb|1ULZ|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit Of
Pyruvate Carboxylase
Length = 451
Score = 309 bits (791), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 159/304 (52%), Positives = 211/304 (69%)
Query: 120 IEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLE 179
+EEA LA E+G+PV++KATAGGGGRG+R+ + +E VK +QA EA AFG + LE
Sbjct: 140 LEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLE 199
Query: 180 KYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXX 239
K+++NP+HIE+QVL DK+GNV+H GERDCSIQRRNQKL+E APS LTPE R+ G+
Sbjct: 200 KFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLVEIAPSLILTPEKREYYGNIVT 259
Query: 240 XXXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 299
IGY GT+EF+ D+ G+ YF+EMNTRIQVEHPV+EM++ +D+++ QI +A G
Sbjct: 260 KAAKEIGYYNAGTMEFIADQEGNLYFIEMNTRIQVEHPVSEMVTGIDIVKWQIKIAAGEP 319
Query: 300 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPP 359
L KQED+ G++IECRINAEDP KNF P I Y GG +R++ + V P
Sbjct: 320 LTIKQEDVKFNGYAIECRINAEDPKKNFAPSTRVIERYYVPGGFGIRVEHAAARGFEVTP 379
Query: 360 SYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAF 419
YDS++ KLI WAPT ++A+ERM+ AL ITGV TTI I+ +DFK GK T +
Sbjct: 380 YYDSMIAKLITWAPTWDEAVERMRAALETYEITGVKTTIPLLINIMKEKDFKAGKFTTKY 439
Query: 420 IPKH 423
+ +H
Sbjct: 440 LEEH 443
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 38/48 (79%)
Query: 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI 120
K+LVANRGEIAVR+IR E+GIP VA+Y+ ++ A HVKLADE+ I
Sbjct: 4 KVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMI 51
>pdb|1BNC|A Chain A, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1BNC|B Chain B, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo)
pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo)
pdb|2J9G|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2J9G|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2VR1|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2VR1|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2V58|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V58|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V59|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V59|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V5A|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2V5A|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2W6M|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6M|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6O|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6O|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6P|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6P|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6Q|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Q|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Z|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W6Z|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W70|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W70|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W71|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
pdb|2W71|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
Length = 449
Score = 308 bits (789), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 164/339 (48%), Positives = 227/339 (66%), Gaps = 13/339 (3%)
Query: 84 VRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGG 143
V I + G+PCV D L D+ +++ +A +G+PV+IKA+ GGG
Sbjct: 117 VSAIAAMKKAGVPCVP-----GSDG---PLGDD---MDKNRAIAKRIGYPVIIKASGGGG 165
Query: 144 GRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 203
GRGMR+ + E + + ++EA AAF ND VY+EKY++NPRH+E QVLAD GN ++
Sbjct: 166 GRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYL 225
Query: 204 GERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSF 263
ERDCS+QRR+QK++EEAP+P +TPELR+ +G+ IGY G GT EFL E G F
Sbjct: 226 AERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEF 284
Query: 264 YFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDP 323
YF+EMNTRIQVEHPVTEMI+ VDLI+EQ+ +A G L KQE++ ++GH++ECRINAEDP
Sbjct: 285 YFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP 344
Query: 324 FKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMK 383
F P PG+IT + GG VR +SH+Y Y VPP YDS++GKLI + R+ AI RMK
Sbjct: 345 -NTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMK 403
Query: 384 RALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPK 422
AL + II G+ T ++ I++ E+F++G + ++ K
Sbjct: 404 NALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEK 442
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELG 131
+KI++ANRGEIA+R++R E+GI VAV+S+ D+D HV LADE+VCI A + L
Sbjct: 3 DKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 62
Query: 132 FPVMIKAT 139
P +I A
Sbjct: 63 IPAIISAA 70
>pdb|3JZF|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZF|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZI|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
pdb|3JZI|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
Length = 486
Score = 308 bits (789), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 164/339 (48%), Positives = 227/339 (66%), Gaps = 13/339 (3%)
Query: 84 VRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGG 143
V I + G+PCV D L D+ +++ +A +G+PV+IKA+ GGG
Sbjct: 138 VSAIAAMKKAGVPCVP-----GSDG---PLGDD---MDKNRAIAKRIGYPVIIKASGGGG 186
Query: 144 GRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 203
GRGMR+ + E + + ++EA AAF ND VY+EKY++NPRH+E QVLAD GN ++
Sbjct: 187 GRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYL 246
Query: 204 GERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSF 263
ERDCS+QRR+QK++EEAP+P +TPELR+ +G+ IGY G GT EFL E G F
Sbjct: 247 AERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEF 305
Query: 264 YFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDP 323
YF+EMNTRIQVEHPVTEMI+ VDLI+EQ+ +A G L KQE++ ++GH++ECRINAEDP
Sbjct: 306 YFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP 365
Query: 324 FKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMK 383
F P PG+IT + GG VR +SH+Y Y VPP YDS++GKLI + R+ AI RMK
Sbjct: 366 -NTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMK 424
Query: 384 RALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPK 422
AL + II G+ T ++ I++ E+F++G + ++ K
Sbjct: 425 NALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEK 463
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELG 131
+KI++ANRGEIA+R++R E+GI VAV+S+ D+D HV LADE+VCI A + L
Sbjct: 24 DKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 83
Query: 132 FPVMIKAT 139
P +I A
Sbjct: 84 IPAIISAA 91
>pdb|3G8C|A Chain A, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
pdb|3G8C|B Chain B, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
Length = 444
Score = 308 bits (789), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 164/339 (48%), Positives = 227/339 (66%), Gaps = 13/339 (3%)
Query: 84 VRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGG 143
V I + G+PCV D L D+ +++ +A +G+PV+IKA+ GGG
Sbjct: 117 VSAIAAMKKAGVPCVP-----GSDG---PLGDD---MDKNRAIAKRIGYPVIIKASGGGG 165
Query: 144 GRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 203
GRGMR+ + E + + ++EA AAF ND VY+EKY++NPRH+E QVLAD GN ++
Sbjct: 166 GRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYL 225
Query: 204 GERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSF 263
ERDCS+QRR+QK++EEAP+P +TPELR+ +G+ IGY G GT EFL E G F
Sbjct: 226 AERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEF 284
Query: 264 YFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDP 323
YF+EMNTRIQVEHPVTEMI+ VDLI+EQ+ +A G L KQE++ ++GH++ECRINAEDP
Sbjct: 285 YFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP 344
Query: 324 FKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMK 383
F P PG+IT + GG VR +SH+Y Y VPP YDS++GKLI + R+ AI RMK
Sbjct: 345 -NTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMK 403
Query: 384 RALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPK 422
AL + II G+ T ++ I++ E+F++G + ++ K
Sbjct: 404 NALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEK 442
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELG 131
+KI++ANRGEIA+R++R E+GI VAV+S+ D+D HV LADE+VCI A + L
Sbjct: 3 DKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 62
Query: 132 FPVMIKAT 139
P +I A
Sbjct: 63 IPAIISAA 70
>pdb|2GPS|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPS|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 308 bits (789), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 164/339 (48%), Positives = 227/339 (66%), Gaps = 13/339 (3%)
Query: 84 VRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGG 143
V I + G+PCV D L D+ +++ +A +G+PV+IKA+ GGG
Sbjct: 137 VSAIAAMKKAGVPCVP-----GSDG---PLGDD---MDKNRAIAKRIGYPVIIKASGGGG 185
Query: 144 GRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 203
GRGMR+ + E + + ++EA AAF ND VY+EKY++NPRH+E QVLAD GN ++
Sbjct: 186 GRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYL 245
Query: 204 GERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSF 263
ERDCS+QRR+QK++EEAP+P +TPELR+ +G+ IGY G GT EFL E G F
Sbjct: 246 AERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEF 304
Query: 264 YFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDP 323
YF+EMNTRIQVEHPVTEMI+ VDLI+EQ+ +A G L KQE++ ++GH++ECRINAEDP
Sbjct: 305 YFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP 364
Query: 324 FKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMK 383
F P PG+IT + GG VR +SH+Y Y VPP YDS++GKLI + R+ AI RMK
Sbjct: 365 -NTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMK 423
Query: 384 RALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPK 422
AL + II G+ T ++ I++ E+F++G + ++ K
Sbjct: 424 NALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEK 462
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 46/68 (67%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELG 131
+KI++ANRGEIA+R++R +GI VAV+S+ D+D HV LADE+VCI A + L
Sbjct: 23 DKIVIANRGEIALRILRACKRLGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 82
Query: 132 FPVMIKAT 139
P +I A
Sbjct: 83 IPAIISAA 90
>pdb|3RUP|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RUP|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RV3|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
pdb|3RV3|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
Length = 452
Score = 308 bits (789), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 164/339 (48%), Positives = 227/339 (66%), Gaps = 13/339 (3%)
Query: 84 VRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGG 143
V I + G+PCV D L D+ +++ +A +G+PV+IKA+ GGG
Sbjct: 120 VSAIAAMKKAGVPCVP-----GSDG---PLGDD---MDKNRAIAKRIGYPVIIKASGGGG 168
Query: 144 GRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 203
GRGMR+ + E + + ++EA AAF ND VY+EKY++NPRH+E QVLAD GN ++
Sbjct: 169 GRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYL 228
Query: 204 GERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSF 263
ERDCS+QRR+QK++EEAP+P +TPELR+ +G+ IGY G GT EFL E G F
Sbjct: 229 AERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEF 287
Query: 264 YFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDP 323
YF+EMNTRIQVEHPVTEMI+ VDLI+EQ+ +A G L KQE++ ++GH++ECRINAEDP
Sbjct: 288 YFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP 347
Query: 324 FKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMK 383
F P PG+IT + GG VR +SH+Y Y VPP YDS++GKLI + R+ AI RMK
Sbjct: 348 -NTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMK 406
Query: 384 RALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPK 422
AL + II G+ T ++ I++ E+F++G + ++ K
Sbjct: 407 NALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEK 445
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELG 131
+KI++ANRGEIA+R++R E+GI VAV+S+ D+D HV LADE+VCI A + L
Sbjct: 6 DKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 65
Query: 132 FPVMIKAT 139
P +I A
Sbjct: 66 IPAIISAA 73
>pdb|3RV4|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase R16e Mutant
In Complex With Mg-Adp And Bicarbonate
Length = 452
Score = 308 bits (788), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 164/339 (48%), Positives = 227/339 (66%), Gaps = 13/339 (3%)
Query: 84 VRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGG 143
V I + G+PCV D L D+ +++ +A +G+PV+IKA+ GGG
Sbjct: 120 VSAIAAMKKAGVPCVP-----GSDG---PLGDD---MDKNRAIAKRIGYPVIIKASGGGG 168
Query: 144 GRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 203
GRGMR+ + E + + ++EA AAF ND VY+EKY++NPRH+E QVLAD GN ++
Sbjct: 169 GRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYL 228
Query: 204 GERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSF 263
ERDCS+QRR+QK++EEAP+P +TPELR+ +G+ IGY G GT EFL E G F
Sbjct: 229 AERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEF 287
Query: 264 YFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDP 323
YF+EMNTRIQVEHPVTEMI+ VDLI+EQ+ +A G L KQE++ ++GH++ECRINAEDP
Sbjct: 288 YFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP 347
Query: 324 FKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMK 383
F P PG+IT + GG VR +SH+Y Y VPP YDS++GKLI + R+ AI RMK
Sbjct: 348 -NTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMK 406
Query: 384 RALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPK 422
AL + II G+ T ++ I++ E+F++G + ++ K
Sbjct: 407 NALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEK 445
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 46/68 (67%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELG 131
+KI++ANRGEIA+ ++R E+GI VAV+S+ D+D HV LADE+VCI A + L
Sbjct: 6 DKIVIANRGEIALEILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 65
Query: 132 FPVMIKAT 139
P +I A
Sbjct: 66 IPAIISAA 73
>pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
pdb|1DV2|B Chain B, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
Length = 452
Score = 306 bits (785), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 163/339 (48%), Positives = 227/339 (66%), Gaps = 13/339 (3%)
Query: 84 VRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGG 143
V I + G+PCV D L D+ +++ +A +G+PV+IKA+ GGG
Sbjct: 120 VSAIAAMKKAGVPCVP-----GSDG---PLGDD---MDKNRAIAKRIGYPVIIKASGGGG 168
Query: 144 GRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 203
GRGMR+ + E + + ++EA AAF ND VY+EKY++NPRH+E QVLAD GN ++
Sbjct: 169 GRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYL 228
Query: 204 GERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSF 263
ERDCS+QRR+QK++EEAP+P +TPELR+ +G+ IGY G GT EFL E G F
Sbjct: 229 AERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEF 287
Query: 264 YFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDP 323
YF++MNTRIQVEHPVTEMI+ VDLI+EQ+ +A G L KQE++ ++GH++ECRINAEDP
Sbjct: 288 YFIKMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP 347
Query: 324 FKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMK 383
F P PG+IT + GG VR +SH+Y Y VPP YDS++GKLI + R+ AI RMK
Sbjct: 348 -NTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMK 406
Query: 384 RALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPK 422
AL + II G+ T ++ I++ E+F++G + ++ K
Sbjct: 407 NALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEK 445
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELG 131
+KI++ANRGEIA+R++R E+GI VAV+S+ D+D HV LADE+VCI A + L
Sbjct: 6 DKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 65
Query: 132 FPVMIKAT 139
P +I A
Sbjct: 66 IPAIISAA 73
>pdb|3G8D|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
pdb|3G8D|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 444
Score = 306 bits (784), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 163/339 (48%), Positives = 226/339 (66%), Gaps = 13/339 (3%)
Query: 84 VRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGG 143
V I + G+PCV D L D+ +++ +A +G+PV+IKA+ GGG
Sbjct: 117 VSAIAAMKKAGVPCVP-----GSDG---PLGDD---MDKNRAIAKRIGYPVIIKASGGGG 165
Query: 144 GRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 203
GRGMR+ + E + + ++EA AAF ND VY+EKY++NPRH+E QVLAD GN ++
Sbjct: 166 GRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYL 225
Query: 204 GERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSF 263
ERDCS+QRR+QK++EEAP+P +TPELR+ +G+ IGY G GT EFL E G F
Sbjct: 226 AERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEF 284
Query: 264 YFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDP 323
YF+EMNTRIQV HPVTEMI+ VDLI+EQ+ +A G L KQE++ ++GH++ECRINAEDP
Sbjct: 285 YFIEMNTRIQVAHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHAVECRINAEDP 344
Query: 324 FKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMK 383
F P PG+IT + GG VR +SH+Y Y VPP YDS++GKLI + R+ AI RMK
Sbjct: 345 -NTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVAIARMK 403
Query: 384 RALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPK 422
AL + II G+ T ++ I++ E+F++G + ++ K
Sbjct: 404 NALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEK 442
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELG 131
+KI++ANRGEIA+R++R E+GI VAV+S+ D+D HV LADE+VCI A + L
Sbjct: 3 DKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 62
Query: 132 FPVMIKAT 139
P +I A
Sbjct: 63 IPAIISAA 70
>pdb|2VQD|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa Complexed With Ampcp
pdb|2C00|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa In Apo Form
pdb|2C00|B Chain B, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa In Apo Form
Length = 464
Score = 303 bits (776), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 149/302 (49%), Positives = 213/302 (70%), Gaps = 2/302 (0%)
Query: 121 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 180
E A+ +A E+G+PV+IKA GGGGRGMR+ + E +K + ++EA AAFGN VYLEK
Sbjct: 143 ETALAIAREVGYPVIIKAAGGGGGRGMRVVYDESELIKSAKLTRTEAGAAFGNPMVYLEK 202
Query: 181 YVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXX 240
++ NPRH+E QVL+D GN +H G+RDCS+QRR+QK++EEAP+P + + R+ +
Sbjct: 203 FLTNPRHVEVQVLSDGQGNAIHLGDRDCSLQRRHQKVIEEAPAPGIDEKARQEVFARCVQ 262
Query: 241 XXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKL 300
IGY G GT EFL E G FYF+EMNTR+QVEHPV+EM++ VD+++E + +A G KL
Sbjct: 263 ACIEIGYRGAGTFEFLY-ENGRFYFIEMNTRVQVEHPVSEMVTGVDIVKEMLRIASGEKL 321
Query: 301 RYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPS 360
+QED+V++GH++ECRINAEDP K F P PG++ + GG VR+DSH+Y Y VPP+
Sbjct: 322 SIRQEDVVIRGHALECRINAEDP-KTFMPSPGKVKHFHAPGGNGVRVDSHLYSGYSVPPN 380
Query: 361 YDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFI 420
YDSL+GK+I + R++A+ RM+ AL++ I+ G+ T E HK ++ F G V+ ++
Sbjct: 381 YDSLVGKVITYGADRDEALARMRNALDELIVDGIKTNTELHKDLVRDAAFCKGGVNIHYL 440
Query: 421 PK 422
K
Sbjct: 441 EK 442
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 47/68 (69%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELG 131
EK+L+ANRGEIA+R++R E+GI VAV+ST D++ +H+ LADESVCI A L
Sbjct: 3 EKVLIANRGEIALRILRACKELGIKTVAVHSTADRELMHLSLADESVCIGPAPATQSYLQ 62
Query: 132 FPVMIKAT 139
P +I A
Sbjct: 63 IPAIIAAA 70
>pdb|3OUZ|A Chain A, Crystal Structure Of Biotin Carboxylase-Adp Complex From
Campylobacter Jejuni
pdb|3OUZ|B Chain B, Crystal Structure Of Biotin Carboxylase-Adp Complex From
Campylobacter Jejuni
pdb|3OUU|A Chain A, Crystal Structure Of Biotin Carboxylase-Beta-Gamma-Atp
Complex From Campylobacter Jejuni
pdb|3OUU|B Chain B, Crystal Structure Of Biotin Carboxylase-Beta-Gamma-Atp
Complex From Campylobacter Jejuni
Length = 446
Score = 294 bits (752), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 155/303 (51%), Positives = 202/303 (66%), Gaps = 2/303 (0%)
Query: 121 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 180
E A KLA E+G+PV++KA AGGGGRG R+ + + K A+SEA AFG+ Y EK
Sbjct: 146 EAAKKLAKEIGYPVILKAAAGGGGRGXRVVENEKDLEKAYWSAESEAXTAFGDGTXYXEK 205
Query: 181 YVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXX 240
Y+QNPRHIE QV+ D +GNV+H GERDCS QRR+QKL+EE+P+ L + R + +
Sbjct: 206 YIQNPRHIEVQVIGDSFGNVIHVGERDCSXQRRHQKLIEESPAILLDEKTRTRLHETAIK 265
Query: 241 XXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKL 300
+IGY G GT EFL+D+ FYF+E NTR+QVEH V+E +S +D+IE+ I VA G L
Sbjct: 266 AAKAIGYEGAGTFEFLVDKNLDFYFIEXNTRLQVEHCVSEXVSGIDIIEQXIKVAEGYAL 325
Query: 301 RYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPS 360
QE I L GHSIECRI AED K F P PG+IT Y+P G VR +SH Y DY VP
Sbjct: 326 P-SQESIKLNGHSIECRITAEDS-KTFLPSPGKITKYIPPAGRNVRXESHCYQDYSVPAY 383
Query: 361 YDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFI 420
YDS +GKL+VWA R KAI + K AL++ +I+G+ TT ++H + DF N DT ++
Sbjct: 384 YDSXIGKLVVWAEDRNKAIAKXKVALDELLISGIKTTKDFHLSXXENPDFINNNYDTNYL 443
Query: 421 PKH 423
+H
Sbjct: 444 ARH 446
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 37/50 (74%)
Query: 74 ILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEA 123
IL+ANRGEIA+R +RT E G + VYS DKDAL++K AD S+CI +A
Sbjct: 9 ILIANRGEIALRALRTIKEXGKKAICVYSEADKDALYLKYADASICIGKA 58
>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|C Chain C, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|E Chain E, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|G Chain G, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|I Chain I, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|K Chain K, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 681
Score = 284 bits (726), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 156/359 (43%), Positives = 220/359 (61%), Gaps = 32/359 (8%)
Query: 88 RTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGM 147
+ A E + V Y + +DA +EAVK+++++G+PVMIKA+AGGGG+GM
Sbjct: 121 KIAQEANVSTVPGYMGLIEDA------------DEAVKISNQIGYPVMIKASAGGGGKGM 168
Query: 148 RLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD 207
R+A E + Q +K+EAA +FG+D +++EK+V PRHIE QVL D +GN ++ GER+
Sbjct: 169 RIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDSHGNGIYLGERE 228
Query: 208 CSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFME 267
CSIQRRNQK++EEAPSP L R+AMG+ ++GY GTVEF++D + +FYF+E
Sbjct: 229 CSIQRRNQKVVEEAPSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFIVDGQKNFYFLE 288
Query: 268 MNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNF 327
MNTR+QVEHPVTE+I+ VDL+E+ I VA G L Q D+ L G +IE R+ AEDP++ F
Sbjct: 289 MNTRLQVEHPVTELITGVDLVEQMIRVAAGEPLSITQGDVKLTGWAIENRLYAEDPYRGF 348
Query: 328 RPGPGRITAYLP----AGGPF----------------VRMDSHVYPDYVVPPSYDSLLGK 367
P GR+T Y P A GP VR D+ VY + YD ++ K
Sbjct: 349 LPSIGRLTRYRPPAETAAGPLLVNGKWQGDAPSGEAAVRNDTGVYEGGEISMYYDPMIAK 408
Query: 368 LIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQE 426
L WAPTR AIE M+ AL+ + G+ + + ++D F +G + TAFI + E
Sbjct: 409 LCTWAPTRAAAIEAMRIALDSFEVEGIGHNLPFLSAVMDHPKFISGDMTTAFIAEEYPE 467
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 40/48 (83%)
Query: 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI 120
KIL+ANRGEIA RVI+TA +MGI VA+YS DK ALHV++ADE+V I
Sbjct: 4 KILIANRGEIACRVIKTARKMGISTVAIYSDADKQALHVQMADEAVHI 51
>pdb|3U9S|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|C Chain C, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|E Chain E, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|G Chain G, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|I Chain I, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|K Chain K, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9T|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Free Enzyme
Length = 655
Score = 280 bits (715), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 158/344 (45%), Positives = 217/344 (63%), Gaps = 14/344 (4%)
Query: 92 EMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAK 151
E G+P V Y +D +E + A +G+PV++KA AGGGG+GM++ +
Sbjct: 131 EAGVPLVPGYHGEAQD------------LETFRREAGRIGYPVLLKAAAGGGGKGMKVVE 178
Query: 152 EPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 211
E + L A+ EA AAFG+ + +EKY+ PRH+E QV AD++G+ ++ ERDCSIQ
Sbjct: 179 REAELAEALSSAQREAKAAFGDARMLVEKYLLKPRHVEIQVFADRHGHCLYLNERDCSIQ 238
Query: 212 RRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNTR 271
RR+QK++EEAP+P L ELR+AMG+ +IGY+G GTVEFLLDERG F+FMEMNTR
Sbjct: 239 RRHQKVVEEAPAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDERGQFFFMEMNTR 298
Query: 272 IQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGP 331
+QVEHPVTE I+ +DL+ QI VA G L QE + L GH+IE R+ AEDP +F P
Sbjct: 299 LQVEHPVTEAITGLDLVAWQIRVARGEALPLTQEQVPLNGHAIEVRLYAEDPEGDFLPAS 358
Query: 332 GRITAYL-PAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTI 390
GR+ Y A GP R+DS V V P YD +L KLI W TRE+A +R+ L +T
Sbjct: 359 GRLMLYREAAAGPGRRVDSGVREGDEVSPFYDPMLAKLIAWGETREEARQRLLAMLAETS 418
Query: 391 ITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQE-LQAPQKI 433
+ G+ T + + + IL F ++DT FI +H+ + L APQ +
Sbjct: 419 VGGLRTNLAFLRRILGHPAFAAAELDTGFIARHQDDLLPAPQAL 462
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 36/47 (76%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESV 118
+++LVANRGEIA RV+R+A +GI VAV+S ID+ A HV AD +V
Sbjct: 9 QRLLVANRGEIACRVMRSARALGIGSVAVHSDIDRHARHVAEADIAV 55
>pdb|2DZD|A Chain A, Crystal Structure Of The Biotin Carboxylase Domain Of
Pyruvate Carboxylase
pdb|2DZD|B Chain B, Crystal Structure Of The Biotin Carboxylase Domain Of
Pyruvate Carboxylase
Length = 461
Score = 277 bits (708), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 143/310 (46%), Positives = 204/310 (65%), Gaps = 12/310 (3%)
Query: 120 IEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLE 179
+E+ V A+ G+P++IKA GGGGRGMR+ + E + ++AKSEA AAFG+D VY+E
Sbjct: 146 LEDVVAFAEAHGYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVE 205
Query: 180 KYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXX 239
K ++NP+HIE Q+L D GN+VH ERDCS+QRR+QK++E APS +L+ ELR+ + +
Sbjct: 206 KLIENPKHIEVQILGDYEGNIVHLYERDCSVQRRHQKVVEVAPSVSLSDELRQRICEAAV 265
Query: 240 XXXXSIGYIGVGTVEFLL--DERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMG 297
S+GY+ GTVEFL+ DE FYF+E+N RIQVEH +TEMI+ +D+++ QI +A G
Sbjct: 266 QLMRSVGYVNAGTVEFLVSGDE---FYFIEVNPRIQVEHTITEMITGIDIVQSQILIADG 322
Query: 298 GKLRY------KQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDS-H 350
L KQEDI + G++I+ R+ EDP NF P G+I AY GG VR+D+ +
Sbjct: 323 CSLHSHEVGIPKQEDIRINGYAIQSRVTTEDPLNNFMPDTGKIMAYRSGGGFGVRLDAGN 382
Query: 351 VYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDF 410
+ V+ P YDSLL KL WA T E+A +M R L + I G+ T I + + ++ F
Sbjct: 383 GFQGAVITPYYDSLLVKLSTWALTFEQAARKMLRNLREFRIRGIKTNIPFLENVVQHPKF 442
Query: 411 KNGKVDTAFI 420
+G+ DT+FI
Sbjct: 443 LSGEYDTSFI 452
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 36/58 (62%)
Query: 68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVK 125
T R K+LVANRGEIA+RV R E+GI VA+YS D + H ADE+ + E K
Sbjct: 3 TRRIRKVLVANRGEIAIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKK 60
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 276 bits (706), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 140/309 (45%), Positives = 194/309 (62%), Gaps = 8/309 (2%)
Query: 120 IEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLE 179
+ E K+A +G+PVM+KA+ GGGGRGMR+ + + K + +AK EA AAFG D VYLE
Sbjct: 160 MAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLE 219
Query: 180 KYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXX 239
K V+ RH+E Q+L D +GNVVH ERDCS+QRRNQK++E AP+P L+ R+ +
Sbjct: 220 KLVERARHVESQILGDTHGNVVHLFERDCSVQRRNQKVVERAPAPYLSEAQRQELAAYSL 279
Query: 240 XXXXSIGYIGVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGG 298
+ YIG GTVE+L+D + G FYF+E+N RIQVEH VTE+++ +D+++ QIH+ G
Sbjct: 280 KIAGATNYIGAGTVEYLMDADTGKFYFIEVNPRIQVEHTVTEVVTGIDIVKAQIHILDGA 339
Query: 299 KLRY------KQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHV- 351
+ QEDI L GH+++CR+ EDP NF P GRITAY A G +R+D
Sbjct: 340 AIGTPQSGVPNQEDIRLNGHALQCRVTTEDPEHNFIPDYGRITAYRSASGFGIRLDGGTS 399
Query: 352 YPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFK 411
Y ++ YD LL K+ WAP +AI RM RAL + I GV T + + + I+ F+
Sbjct: 400 YSGAIITRYYDPLLVKVTAWAPNPLEAISRMDRALREFRIRGVATNLTFLEAIIGHPKFR 459
Query: 412 NGKVDTAFI 420
+ T FI
Sbjct: 460 DNSYTTRFI 468
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 40/59 (67%)
Query: 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELG 131
KILVANR EIA+RV R A+E+GI VA+++ DK ALH ADES + LA +LG
Sbjct: 16 KILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDLG 74
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 276 bits (706), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 140/309 (45%), Positives = 194/309 (62%), Gaps = 8/309 (2%)
Query: 120 IEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLE 179
+ E K+A +G+PVM+KA+ GGGGRGMR+ + + K + +AK EA AAFG D VYLE
Sbjct: 160 MAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLE 219
Query: 180 KYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXX 239
K V+ RH+E Q+L D +GNVVH ERDCS+QRRNQK++E AP+P L+ R+ +
Sbjct: 220 KLVERARHVESQILGDTHGNVVHLFERDCSVQRRNQKVVERAPAPYLSEAQRQELAAYSL 279
Query: 240 XXXXSIGYIGVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGG 298
+ YIG GTVE+L+D + G FYF+E+N RIQVEH VTE+++ +D+++ QIH+ G
Sbjct: 280 KIAGATNYIGAGTVEYLMDADTGKFYFIEVNPRIQVEHTVTEVVTGIDIVKAQIHILDGA 339
Query: 299 KLRY------KQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHV- 351
+ QEDI L GH+++CR+ EDP NF P GRITAY A G +R+D
Sbjct: 340 AIGTPQSGVPNQEDIRLNGHALQCRVTTEDPEHNFIPDYGRITAYRSASGFGIRLDGGTS 399
Query: 352 YPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFK 411
Y ++ YD LL K+ WAP +AI RM RAL + I GV T + + + I+ F+
Sbjct: 400 YSGAIITRYYDPLLVKVTAWAPNPLEAISRMDRALREFRIRGVATNLTFLEAIIGHPKFR 459
Query: 412 NGKVDTAFI 420
+ T FI
Sbjct: 460 DNSYTTRFI 468
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 40/59 (67%)
Query: 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELG 131
KILVANR EIA+RV R A+E+GI VA+++ DK ALH ADES + LA +LG
Sbjct: 16 KILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDLG 74
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 266 bits (680), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 139/309 (44%), Positives = 199/309 (64%), Gaps = 12/309 (3%)
Query: 121 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 180
E A + A+E GFP+MIKAT+GGGG+GMR+ +E E +AKSEA +FGN VY+E+
Sbjct: 168 ELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIER 227
Query: 181 YVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXX 240
Y+ NP+HIE QV+ D++GN+VH ERDCS+QRR+QK++E APS L+P LR+ + D
Sbjct: 228 YIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQ 287
Query: 241 XXXSIGYIGVGTVEFLL--DERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGG 298
+I Y+ GTVEFL+ DE F+F+E+N R+QVEH +TEM++ +D+++ QI VA G
Sbjct: 288 LMENIKYVNAGTVEFLVSGDE---FFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGA 344
Query: 299 KL------RYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDS-HV 351
L +Q+DI G++I+CRI EDP +F P G I AY +GG VR+D+
Sbjct: 345 DLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTGTIIAYRSSGGAGVRLDAGDG 404
Query: 352 YPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFK 411
+ + P YDSLL KL A + ++A E+M R+L + I GV T I + ++ + F
Sbjct: 405 FQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMRIRGVKTNIPFLINVMKNKKFT 464
Query: 412 NGKVDTAFI 420
+G T FI
Sbjct: 465 SGDYTTKFI 473
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI 120
+K+LVANRGEIA+R+ R A E+ I VA+YS DK +LH ADES +
Sbjct: 28 KKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLV 76
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 265 bits (677), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 139/309 (44%), Positives = 199/309 (64%), Gaps = 12/309 (3%)
Query: 121 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 180
E A + A+E GFP+MIKAT+GGGG+GMR+ +E E +AKSEA +FGN VY+E+
Sbjct: 145 ELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIER 204
Query: 181 YVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXX 240
Y+ NP+HIE QV+ D++GN+VH ERDCS+QRR+QK++E APS L+P LR+ + D
Sbjct: 205 YIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQ 264
Query: 241 XXXSIGYIGVGTVEFLL--DERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGG 298
+I Y+ GTVEFL+ DE F+F+E+N R+QVEH +TEM++ +D+++ QI VA G
Sbjct: 265 LMENIKYVNAGTVEFLVSGDE---FFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGA 321
Query: 299 KL------RYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDS-HV 351
L +Q+DI G++I+CRI EDP +F P G I AY +GG VR+D+
Sbjct: 322 DLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFGVRLDAGDG 381
Query: 352 YPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFK 411
+ + P YDSLL KL A + ++A E+M R+L + I GV T I + ++ + F
Sbjct: 382 FQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMRIRGVKTNIPFLINVMKNKKFT 441
Query: 412 NGKVDTAFI 420
+G T FI
Sbjct: 442 SGDYTTKFI 450
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI 120
+K+LVANRGEIA+R+ R A E+ I VA+YS DK +LH ADES +
Sbjct: 5 KKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLV 53
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 265 bits (677), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 139/309 (44%), Positives = 199/309 (64%), Gaps = 12/309 (3%)
Query: 121 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 180
E A + A+E GFP+MIKAT+GGGG+GMR+ +E E +AKSEA +FGN VY+E+
Sbjct: 145 ELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIER 204
Query: 181 YVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXX 240
Y+ NP+HIE QV+ D++GN+VH ERDCS+QRR+QK++E APS L+P LR+ + D
Sbjct: 205 YIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQ 264
Query: 241 XXXSIGYIGVGTVEFLL--DERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGG 298
+I Y+ GTVEFL+ DE F+F+E+N R+QVEH +TEM++ +D+++ QI VA G
Sbjct: 265 LMENIKYVNAGTVEFLVSGDE---FFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGA 321
Query: 299 KL------RYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDS-HV 351
L +Q+DI G++I+CRI EDP +F P G I AY +GG VR+D+
Sbjct: 322 DLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFGVRLDAGDG 381
Query: 352 YPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFK 411
+ + P YDSLL KL A + ++A E+M R+L + I GV T I + ++ + F
Sbjct: 382 FQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMRIRGVKTNIPFLINVMKNKKFT 441
Query: 412 NGKVDTAFI 420
+G T FI
Sbjct: 442 SGDYTTKFI 450
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI 120
+K+LVANRGEIA+R+ R A E+ I VA+YS DK +LH ADES +
Sbjct: 5 KKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLV 53
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 265 bits (677), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 139/309 (44%), Positives = 199/309 (64%), Gaps = 12/309 (3%)
Query: 121 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 180
E A + A+E GFP+MIKAT+GGGG+GMR+ +E E +AKSEA +FGN VY+E+
Sbjct: 145 ELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIER 204
Query: 181 YVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXX 240
Y+ NP+HIE QV+ D++GN+VH ERDCS+QRR+QK++E APS L+P LR+ + D
Sbjct: 205 YIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQ 264
Query: 241 XXXSIGYIGVGTVEFLL--DERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGG 298
+I Y+ GTVEFL+ DE F+F+E+N R+QVEH +TEM++ +D+++ QI VA G
Sbjct: 265 LMENIKYVNAGTVEFLVSGDE---FFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGA 321
Query: 299 KL------RYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDS-HV 351
L +Q+DI G++I+CRI EDP +F P G I AY +GG VR+D+
Sbjct: 322 DLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFGVRLDAGDG 381
Query: 352 YPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFK 411
+ + P YDSLL KL A + ++A E+M R+L + I GV T I + ++ + F
Sbjct: 382 FQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMRIRGVKTNIPFLINVMKNKKFT 441
Query: 412 NGKVDTAFI 420
+G T FI
Sbjct: 442 SGDYTTKFI 450
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI 120
+K+LVANRGEIA+R+ R A E+ I VA+YS DK +LH ADES +
Sbjct: 5 KKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLV 53
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 265 bits (677), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 139/309 (44%), Positives = 199/309 (64%), Gaps = 12/309 (3%)
Query: 121 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 180
E A + A+E GFP+MIKAT+GGGG+GMR+ +E E +AKSEA +FGN VY+E+
Sbjct: 168 ELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIER 227
Query: 181 YVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXX 240
Y+ NP+HIE QV+ D++GN+VH ERDCS+QRR+QK++E APS L+P LR+ + D
Sbjct: 228 YIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQ 287
Query: 241 XXXSIGYIGVGTVEFLL--DERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGG 298
+I Y+ GTVEFL+ DE F+F+E+N R+QVEH +TEM++ +D+++ QI VA G
Sbjct: 288 LMENIKYVNAGTVEFLVSGDE---FFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGA 344
Query: 299 KL------RYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDS-HV 351
L +Q+DI G++I+CRI EDP +F P G I AY +GG VR+D+
Sbjct: 345 DLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFGVRLDAGDG 404
Query: 352 YPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFK 411
+ + P YDSLL KL A + ++A E+M R+L + I GV T I + ++ + F
Sbjct: 405 FQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMRIRGVKTNIPFLINVMKNKKFT 464
Query: 412 NGKVDTAFI 420
+G T FI
Sbjct: 465 SGDYTTKFI 473
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI 120
+K+LVANRGEIA+R+ R A E+ I VA+YS DK +LH ADES +
Sbjct: 28 KKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLV 76
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 265 bits (677), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 139/309 (44%), Positives = 199/309 (64%), Gaps = 12/309 (3%)
Query: 121 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 180
E A + A+E GFP+MIKAT+GGGG+GMR+ +E E +AKSEA +FGN VY+E+
Sbjct: 168 ELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIER 227
Query: 181 YVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXX 240
Y+ NP+HIE QV+ D++GN+VH ERDCS+QRR+QK++E APS L+P LR+ + D
Sbjct: 228 YIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQ 287
Query: 241 XXXSIGYIGVGTVEFLL--DERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGG 298
+I Y+ GTVEFL+ DE F+F+E+N R+QVEH +TEM++ +D+++ QI VA G
Sbjct: 288 LMENIKYVNAGTVEFLVSGDE---FFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGA 344
Query: 299 KL------RYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDS-HV 351
L +Q+DI G++I+CRI EDP +F P G I AY +GG VR+D+
Sbjct: 345 DLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFGVRLDAGDG 404
Query: 352 YPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFK 411
+ + P YDSLL KL A + ++A E+M R+L + I GV T I + ++ + F
Sbjct: 405 FQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMRIRGVKTNIPFLINVMKNKKFT 464
Query: 412 NGKVDTAFI 420
+G T FI
Sbjct: 465 SGDYTTKFI 473
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI 120
+K+LVANRGEIA+R+ A E+ I VA+YS DK +LH ADES +
Sbjct: 28 KKLLVANRGEIAIRIFEAAAELDISTVAIYSNEDKSSLHRYKADESYLV 76
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 264 bits (674), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 139/309 (44%), Positives = 198/309 (64%), Gaps = 12/309 (3%)
Query: 121 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 180
E A + A+E GFP+MIKAT+GGGG+GMR+ +E E +AKSEA +FGN VY+E+
Sbjct: 168 ELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIER 227
Query: 181 YVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXX 240
Y+ NP+HIE QV+ D++GN+VH ERDCS+QRR+QK++E APS L+P LR+ + D
Sbjct: 228 YIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQ 287
Query: 241 XXXSIGYIGVGTVEFLL--DERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGG 298
+I Y+ GTVEFL+ DE F+F+E+N R+QVEH +TEM++ +D+++ QI VA G
Sbjct: 288 LMENIKYVNAGTVEFLVSGDE---FFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGA 344
Query: 299 KL------RYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDS-HV 351
L +Q+DI G++I+CRI EDP +F P G I AY +GG VR+D+
Sbjct: 345 DLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFGVRLDAGDG 404
Query: 352 YPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFK 411
+ + P YDSLL KL A + ++A E M R+L + I GV T I + ++ + F
Sbjct: 405 FQGAEISPYYDSLLVKLSTHAISFKQAEEEMVRSLREMRIRGVKTNIPFLINVMKNKKFT 464
Query: 412 NGKVDTAFI 420
+G T FI
Sbjct: 465 SGDYTTKFI 473
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI 120
+K+LVANRGEIA+R+ R A E+ I VA+YS DK +LH ADES +
Sbjct: 28 KKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLV 76
>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea
Carboxylase
Length = 1236
Score = 236 bits (602), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 132/361 (36%), Positives = 200/361 (55%), Gaps = 25/361 (6%)
Query: 69 CRQEKILVANRGEIAVRVIRTAHEM-------GIPCVAVYSTIDKDALHVKLADESVCIE 121
C QE I+ A+R + H +P V I KDA +
Sbjct: 124 CSQENIVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGSGLI-KDA------------K 170
Query: 122 EAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKY 181
EA ++A +L +PVM+K+TAGGGG G++ D+ ++ + + + + FG+ GV++E++
Sbjct: 171 EAKEVAKKLEYPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERF 230
Query: 182 VQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXX 241
V N RH+E Q++ D +G + GERDCS+QRRNQK++EE P+P L R M
Sbjct: 231 VNNARHVEIQMMGDGFGKAIAIGERDCSLQRRNQKVIEETPAPNLPEATRAKMRAASERL 290
Query: 242 XXSIGYIGVGTVEFLLDE-RGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKL 300
+ Y GTVEF+ DE R FYF+E+N R+QVEHP+TEM++ +DL+E + +A
Sbjct: 291 GSLLKYKCAGTVEFIYDEQRDEFYFLEVNARLQVEHPITEMVTGLDLVEWMLRIAANDSP 350
Query: 301 RYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAY-LPAGGPFVRMDSHVYPDYVVPP 359
+ I + G SIE R+ AE+P K+FRP PG++T+ P+ + R+D+ V V
Sbjct: 351 DFDNTKIEVSGASIEARLYAENPVKDFRPSPGQLTSVSFPS---WARVDTWVKKGTNVSA 407
Query: 360 SYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAF 419
YD L K+IV R AI ++ +ALN+T + G T I+Y + I + FK KV T
Sbjct: 408 EYDPTLAKIIVHGKDRNDAIMKLNQALNETAVYGCITNIDYLRSIASSKMFKEAKVATKV 467
Query: 420 I 420
+
Sbjct: 468 L 468
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 42/76 (55%)
Query: 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELG 131
E +L+ANRGEIAVR+++T MGI VAVYS DK + HV AD SV + L
Sbjct: 32 ETVLIANRGEIAVRIMKTLKRMGIKSVAVYSDPDKYSQHVTDADFSVALHGRTAAETYLD 91
Query: 132 FPVMIKATAGGGGRGM 147
+I A G + +
Sbjct: 92 IDKIINAAKKTGAQAI 107
>pdb|2YL2|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
pdb|2YL2|B Chain B, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
Length = 540
Score = 207 bits (526), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 183/333 (54%), Gaps = 41/333 (12%)
Query: 120 IEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLE 179
+++ ++ A+E+G+PVMIKA+ GGGG+G+R D+F L +Q ++E + +++
Sbjct: 217 VDDGLQAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGS----PIFVM 272
Query: 180 KYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXX 239
+ + RH+E Q+LAD+YGN + RDCS+QRR+QK++EEAP+ TP + + M
Sbjct: 273 RLAKQSRHLEVQILADQYGNAISLFGRDCSVQRRHQKIIEEAPATIATPAVFEHMEQCAV 332
Query: 240 XXXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 299
+GY+ GTVE+L + GSFYF+E+N R+QVEHP TEM++ V+L Q+ +AMG
Sbjct: 333 KLAKMVGYVSAGTVEYLYSQDGSFYFLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIP 392
Query: 300 LRYKQEDIVL-----------------------QGHSIECRINAEDPFKNFRPGPGRITA 336
L Y+ +DI + +GH I RI +E+P + F+P G +
Sbjct: 393 L-YRIKDIRMMYGVSPWGDSPIDFEDSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQE 451
Query: 337 YLPAGGPFVRMDSHVYPDYVVPPS------YDSLLGKLIVWAPTREKAIERMKRALNDTI 390
R + +V+ + V + DS G W RE+AI M AL +
Sbjct: 452 L------NFRSNKNVWGYFSVAAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELS 505
Query: 391 ITG-VPTTIEYHKLILDVEDFKNGKVDTAFIPK 422
I G TT+EY +L+ E F+ ++DT ++ +
Sbjct: 506 IRGDFRTTVEYLIKLLETESFQMNRIDTGWLDR 538
>pdb|2HJW|A Chain A, Crystal Structure Of The Bc Domain Of Acc2
Length = 573
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 119/331 (35%), Positives = 182/331 (54%), Gaps = 41/331 (12%)
Query: 120 IEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLE 179
++E ++ A+ +GFP+MIKA+ GGGG+G+R A+ ++F L +Q +SE + ++L
Sbjct: 227 VDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGS----PIFLM 282
Query: 180 KYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXX 239
K Q+ RH+E Q+LAD+YGN V RDCSIQRR+QK++EEAP+ + + M
Sbjct: 283 KLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAI 342
Query: 240 XXXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 299
++GY+ GTVE+L + GSF+F+E+N R+QVEHP TEMI+ V+L Q+ +AMG
Sbjct: 343 RLAKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVP 402
Query: 300 LRYKQEDIVL-----------------------QGHSIECRINAEDPFKNFRPGPGRITA 336
L ++ +DI L +GH I RI +E+P + F+P G +
Sbjct: 403 L-HRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQE 461
Query: 337 YLPAGGPFVRMDSHVYPDYVVPPS------YDSLLGKLIVWAPTREKAIERMKRALNDTI 390
R +V+ + V + DS G W RE+AI M AL +
Sbjct: 462 L------NFRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELS 515
Query: 391 ITG-VPTTIEYHKLILDVEDFKNGKVDTAFI 420
I G TT+EY +L+ E F+N +DT ++
Sbjct: 516 IRGDFRTTVEYLINLLETESFQNNDIDTGWL 546
>pdb|3JRW|A Chain A, Phosphorylated Bc Domain Of Acc2
Length = 587
Score = 205 bits (522), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 119/331 (35%), Positives = 182/331 (54%), Gaps = 41/331 (12%)
Query: 120 IEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLE 179
++E ++ A+ +GFP+MIKA+ GGGG+G+R A+ ++F L +Q +SE + ++L
Sbjct: 233 VDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGS----PIFLM 288
Query: 180 KYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXX 239
K Q+ RH+E Q+LAD+YGN V RDCSIQRR+QK++EEAP+ + + M
Sbjct: 289 KLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAI 348
Query: 240 XXXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 299
++GY+ GTVE+L + GSF+F+E+N R+QVEHP TEMI+ V+L Q+ +AMG
Sbjct: 349 RLAKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVP 408
Query: 300 LRYKQEDIVL-----------------------QGHSIECRINAEDPFKNFRPGPGRITA 336
L ++ +DI L +GH I RI +E+P + F+P G +
Sbjct: 409 L-HRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQE 467
Query: 337 YLPAGGPFVRMDSHVYPDYVVPPS------YDSLLGKLIVWAPTREKAIERMKRALNDTI 390
R +V+ + V + DS G W RE+AI M AL +
Sbjct: 468 L------NFRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELS 521
Query: 391 ITG-VPTTIEYHKLILDVEDFKNGKVDTAFI 420
I G TT+EY +L+ E F+N +DT ++
Sbjct: 522 IRGDFRTTVEYLINLLETESFQNNDIDTGWL 552
>pdb|3JRX|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 In Complex With
Soraphen A
Length = 587
Score = 205 bits (522), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 119/331 (35%), Positives = 182/331 (54%), Gaps = 41/331 (12%)
Query: 120 IEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLE 179
++E ++ A+ +GFP+MIKA+ GGGG+G+R A+ ++F L +Q +SE + ++L
Sbjct: 233 VDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGS----PIFLM 288
Query: 180 KYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXX 239
K Q+ RH+E Q+LAD+YGN V RDCSIQRR+QK++EEAP+ + + M
Sbjct: 289 KLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAI 348
Query: 240 XXXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 299
++GY+ GTVE+L + GSF+F+E+N R+QVEHP TEMI+ V+L Q+ +AMG
Sbjct: 349 RLAKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVP 408
Query: 300 LRYKQEDIVL-----------------------QGHSIECRINAEDPFKNFRPGPGRITA 336
L ++ +DI L +GH I RI +E+P + F+P G +
Sbjct: 409 L-HRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQE 467
Query: 337 YLPAGGPFVRMDSHVYPDYVVPPS------YDSLLGKLIVWAPTREKAIERMKRALNDTI 390
R +V+ + V + DS G W RE+AI M AL +
Sbjct: 468 L------NFRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELS 521
Query: 391 ITG-VPTTIEYHKLILDVEDFKNGKVDTAFI 420
I G TT+EY +L+ E F+N +DT ++
Sbjct: 522 IRGDFRTTVEYLINLLETESFQNNDIDTGWL 552
>pdb|3GID|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GID|B Chain B, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GLK|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2)
Length = 540
Score = 205 bits (522), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 119/331 (35%), Positives = 182/331 (54%), Gaps = 41/331 (12%)
Query: 120 IEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLE 179
++E ++ A+ +GFP+MIKA+ GGGG+G+R A+ ++F L +Q +SE + ++L
Sbjct: 217 VDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGS----PIFLM 272
Query: 180 KYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXX 239
K Q+ RH+E Q+LAD+YGN V RDCSIQRR+QK++EEAP+ + + M
Sbjct: 273 KLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAI 332
Query: 240 XXXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 299
++GY+ GTVE+L + GSF+F+E+N R+QVEHP TEMI+ V+L Q+ +AMG
Sbjct: 333 RLAKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVP 392
Query: 300 LRYKQEDIVL-----------------------QGHSIECRINAEDPFKNFRPGPGRITA 336
L ++ +DI L +GH I RI +E+P + F+P G +
Sbjct: 393 L-HRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQE 451
Query: 337 YLPAGGPFVRMDSHVYPDYVVPPS------YDSLLGKLIVWAPTREKAIERMKRALNDTI 390
R +V+ + V + DS G W RE+AI M AL +
Sbjct: 452 L------NFRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELS 505
Query: 391 ITG-VPTTIEYHKLILDVEDFKNGKVDTAFI 420
I G TT+EY +L+ E F+N +DT ++
Sbjct: 506 IRGDFRTTVEYLINLLETESFQNNDIDTGWL 536
>pdb|1W93|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae
Length = 553
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 118/381 (30%), Positives = 185/381 (48%), Gaps = 61/381 (16%)
Query: 90 AHEMGIPCVAVYSTIDKDALHVK-----------LADESVCI--EEAVKLADELGFPVMI 136
A +PC+ +S D +HV + + C E+ ++ A +GFPVMI
Sbjct: 180 AQSAKVPCIP-WSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMI 238
Query: 137 KATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK 196
KA+ GGGG+G+R + ++F+ L QA +E + +++ K RH+E Q+LAD+
Sbjct: 239 KASEGGGGKGIRQVEREEDFIALYHQAANEIPGS----PIFIMKLAGRARHLEVQLLADQ 294
Query: 197 YGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFL 256
YG + RDCS+QRR+QK++EEAP E M +GY+ GTVE+L
Sbjct: 295 YGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYL 354
Query: 257 LD-ERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLR-------------- 301
+ G FYF+E+N R+QVEHP TEM+S V+L Q+ +AMG +
Sbjct: 355 YSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHRISDIRTLYGMNPH 414
Query: 302 --------YKQEDI-------VLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVR 346
+K +D + +GH CRI +EDP F+P G + R
Sbjct: 415 SASEIDFEFKTQDATKKQRRPIPKGHCTACRITSEDPNDGFKPSGGTLHEL------NFR 468
Query: 347 MDSHVYPDYVVPPS------YDSLLGKLIVWAPTREKAIERMKRALNDTIITG-VPTTIE 399
S+V+ + V + DS G + + R+ + + M AL + I G TT+E
Sbjct: 469 SSSNVWGYFSVGNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKELSIRGDFRTTVE 528
Query: 400 YHKLILDVEDFKNGKVDTAFI 420
Y +L+ EDF++ + T ++
Sbjct: 529 YLIKLLETEDFEDNTITTGWL 549
>pdb|1W96|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
pdb|1W96|B Chain B, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
pdb|1W96|C Chain C, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
Length = 554
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 118/381 (30%), Positives = 185/381 (48%), Gaps = 61/381 (16%)
Query: 90 AHEMGIPCVAVYSTIDKDALHVK-----------LADESVCI--EEAVKLADELGFPVMI 136
A +PC+ +S D +HV + + C E+ ++ A +GFPVMI
Sbjct: 181 AQSAKVPCIP-WSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMI 239
Query: 137 KATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK 196
KA+ GGGG+G+R + ++F+ L QA +E + +++ K RH+E Q+LAD+
Sbjct: 240 KASEGGGGKGIRQVEREEDFIALYHQAANEIPGS----PIFIMKLAGRARHLEVQLLADQ 295
Query: 197 YGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFL 256
YG + RDCS+QRR+QK++EEAP E M +GY+ GTVE+L
Sbjct: 296 YGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYL 355
Query: 257 LD-ERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLR-------------- 301
+ G FYF+E+N R+QVEHP TEM+S V+L Q+ +AMG +
Sbjct: 356 YSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHRISDIRTLYGMNPH 415
Query: 302 --------YKQEDI-------VLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVR 346
+K +D + +GH CRI +EDP F+P G + R
Sbjct: 416 SASEIDFEFKTQDATKKQRRPIPKGHCTACRITSEDPNDGFKPSGGTLHEL------NFR 469
Query: 347 MDSHVYPDYVVPPS------YDSLLGKLIVWAPTREKAIERMKRALNDTIITG-VPTTIE 399
S+V+ + V + DS G + + R+ + + M AL + I G TT+E
Sbjct: 470 SSSNVWGYFSVGNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKELSIRGDFRTTVE 529
Query: 400 YHKLILDVEDFKNGKVDTAFI 420
Y +L+ EDF++ + T ++
Sbjct: 530 YLIKLLETEDFEDNTITTGWL 550
>pdb|2CQY|A Chain A, Solution Structure Of B Domain From Human Propionyl-Coa
Carboxylase Alpha Subunit
Length = 108
Score = 67.0 bits (162), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 54/68 (79%)
Query: 121 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 180
EEAV++A E+G+PVMIKA+AGGGG+GMR+A + +E + + EAA++FG+D + +EK
Sbjct: 35 EEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEK 94
Query: 181 YVQNPRHI 188
++ NPRHI
Sbjct: 95 FIDNPRHI 102
>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 1073
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 30/195 (15%)
Query: 119 CIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG-VY 177
IE AV+ A E+G+P++++A+ GGR M + + + + Q A S ND V
Sbjct: 697 AIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVS-----VSNDAPVL 751
Query: 178 LEKYVQNPRHIEFQVLADK----YGNV--------VHFGERDCSIQRRNQKLLEEAPSPA 225
L+ ++ + ++ + D G + VH G+ CS+ P+
Sbjct: 752 LDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSL-----------PAYT 800
Query: 226 LTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSV 285
L+ E++ M + G+ V+F + + Y +E+N R P + V
Sbjct: 801 LSQEIQDVMRQQVQKLAFELQVRGLMNVQFAV-KNNEVYLIEVNPRAARTVPFVSKATGV 859
Query: 286 DLIEEQIHVAMGGKL 300
L + V G L
Sbjct: 860 PLAKVAARVMAGKSL 874
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 84/196 (42%), Gaps = 16/196 (8%)
Query: 120 IEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLE 179
+EEA+ +A ++GFP +I+ + GG G +A +EF ++ + + + ++
Sbjct: 152 MEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSP----TKELLID 207
Query: 180 KYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE------APSPALTPELRKA 233
+ + + E +V+ DK N + CSI+ + + AP+ LT + +
Sbjct: 208 ESLIGWKEYEMEVVRDKNDNCIIV----CSIENFDAMGIHTGDSITVAPAQTLTDKEYQI 263
Query: 234 MGDXXXXXXXSIGY-IGVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQ 291
M + IG G V+F ++ + G +EMN R+ + + + +
Sbjct: 264 MRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVA 323
Query: 292 IHVAMGGKLRYKQEDI 307
+A+G L DI
Sbjct: 324 AKLAVGYTLDELMNDI 339
>pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 1073
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 103/254 (40%), Gaps = 44/254 (17%)
Query: 74 ILVANRGEIAVRVIRTAHEMGIPCV-----AVYSTIDKDALH-----VKL---ADESV-C 119
++V G+ +++ R G+P + A+ D++ +KL A+ +V
Sbjct: 638 VIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTA 697
Query: 120 IEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG-VYL 178
IE AV+ A E+G+P++++ + GGR M + + + + Q A S ND V L
Sbjct: 698 IEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVS-----VSNDAPVLL 752
Query: 179 EKYVQNPRHIEFQVLADK----YGNV--------VHFGERDCSIQRRNQKLLEEAPSPAL 226
+ ++ + ++ + D G + VH G+ CS+ P+ L
Sbjct: 753 DHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSL-----------PAYTL 801
Query: 227 TPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVD 286
+ E++ M + G+ V+F + + Y +E+N R P + V
Sbjct: 802 SQEIQDVMRQQVQKLAFELQVRGLMNVQFAV-KNNEVYLIEVNPRAARTVPFVSKATGVP 860
Query: 287 LIEEQIHVAMGGKL 300
L + V G L
Sbjct: 861 LAKVAARVMAGKSL 874
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 84/196 (42%), Gaps = 16/196 (8%)
Query: 120 IEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLE 179
+EEA+ +A ++GFP +I+ + GG G +A +EF ++ + + + ++
Sbjct: 152 MEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSP----TKELLID 207
Query: 180 KYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE------APSPALTPELRKA 233
+ + + E +V+ DK N + CSI+ + + AP+ LT + +
Sbjct: 208 ESLIGWKEYEMEVVRDKNDNCIIV----CSIENFDAMGIHTGDSITVAPAQTLTDKEYQI 263
Query: 234 MGDXXXXXXXSIGY-IGVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQ 291
M + IG G V+F ++ + G +EMN R+ + + + +
Sbjct: 264 MRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVA 323
Query: 292 IHVAMGGKLRYKQEDI 307
+A+G L DI
Sbjct: 324 AKLAVGYTLDELMNDI 339
>pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1T36|A Chain A, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|C Chain C, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|E Chain E, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|G Chain G, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 1073
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 30/195 (15%)
Query: 119 CIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG-VY 177
IE AV+ A E+G+P++++ + GGR M + + + + Q A S ND V
Sbjct: 697 AIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVS-----VSNDAPVL 751
Query: 178 LEKYVQNPRHIEFQVLADK----YGNV--------VHFGERDCSIQRRNQKLLEEAPSPA 225
L+ ++ + ++ + D G + VH G+ CS+ P+
Sbjct: 752 LDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSL-----------PAYT 800
Query: 226 LTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSV 285
L+ E++ M + G+ V+F + + Y +E+N R P + V
Sbjct: 801 LSQEIQDVMRQQVQKLAFELQVRGLMNVQFAV-KNNEVYLIEVNPRAARTVPFVSKATGV 859
Query: 286 DLIEEQIHVAMGGKL 300
L + V G L
Sbjct: 860 PLAKVAARVMAGKSL 874
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 84/196 (42%), Gaps = 16/196 (8%)
Query: 120 IEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLE 179
+EEA+ +A ++GFP +I+ + GG G +A +EF ++ + + + ++
Sbjct: 152 MEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSP----TKELLID 207
Query: 180 KYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE------APSPALTPELRKA 233
+ + + E +V+ DK N + CSI+ + + AP+ LT + +
Sbjct: 208 ESLIGWKEYEMEVVRDKNDNCIIV----CSIENFDAMGIHTGDSITVAPAQTLTDKEYQI 263
Query: 234 MGDXXXXXXXSIGY-IGVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQ 291
M + IG G V+F ++ + G +EMN R+ + + + +
Sbjct: 264 MRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVA 323
Query: 292 IHVAMGGKLRYKQEDI 307
+A+G L DI
Sbjct: 324 AKLAVGYTLDELMNDI 339
>pdb|3VPD|A Chain A, Lysx From Thermus Thermophilus Complexed With Amp-pnp
pdb|3VPD|B Chain B, Lysx From Thermus Thermophilus Complexed With Amp-pnp
Length = 281
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 19/144 (13%)
Query: 67 VTCRQEKILVANRGEIAVRVIRTAHEMGIPCV----AVYSTIDKDALHVKLADESVCI-- 120
VT E+ + +RG A R + +GIP V + + DK A V LA +
Sbjct: 49 VTVALERCVSQSRGLAAARYLTA---LGIPVVNRPEVIEACGDKWATSVALAKAGLPQPK 105
Query: 121 -------EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGN 173
EEA++L + G+PV++K G GR LAK D E F +
Sbjct: 106 TALATDREEALRLMEAFGYPVVLKPVIGSWGR--LLAKVTDRAAAEALLEHKEVLGGFQH 163
Query: 174 DGVYLEKYVQNP-RHIEFQVLADK 196
Y+++YV+ P R I V+ ++
Sbjct: 164 QLFYIQEYVEKPGRDIRVFVVGER 187
>pdb|1UC8|A Chain A, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
pdb|1UC8|B Chain B, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
Length = 280
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 19/144 (13%)
Query: 67 VTCRQEKILVANRGEIAVRVIRTAHEMGIPCV----AVYSTIDKDALHVKLADESVCI-- 120
VT E+ + +RG A R + +GIP V + + DK A V LA +
Sbjct: 49 VTVALERCVSQSRGLAAARYLTA---LGIPVVNRPEVIEACGDKWATSVALAKAGLPQPK 105
Query: 121 -------EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGN 173
EEA++L + G+PV++K G GR LA E F +
Sbjct: 106 TALATDREEALRLMEAFGYPVVLKPVIGSWGR--LLAXXXXXXXXXXXXXXKEVLGGFQH 163
Query: 174 DGVYLEKYVQNP-RHIEFQVLADK 196
Y+++YV+ P R I V+ ++
Sbjct: 164 QLFYIQEYVEKPGRDIRVFVVGER 187
>pdb|3ORQ|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus Complexed With Adp
pdb|3ORQ|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus Complexed With Adp
pdb|3ORR|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus
pdb|3ORR|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole Synthetase
From Staphylococcus Aureus
Length = 377
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 22/160 (13%)
Query: 116 ESVCIEEAVKLADELGFPVMIKATAGG-GGRGMRL---AKEPDEFVKLLQQAKSEAAAAF 171
ES I++A+ + LG+P ++K GG G+G L K+ E KL++ SE A
Sbjct: 133 ESTDIDKAI---ETLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIE--TSECVA-- 185
Query: 172 GNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELR 231
EKY+ + + V + F ++ + RNQ +L + PA +
Sbjct: 186 -------EKYLNIKKEVSLTVTRGNNNQITFFPLQEN--EHRNQ-ILFKTIVPARIDKTA 235
Query: 232 KAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNTR 271
+A + SI +IG TVEF +D Y E+ R
Sbjct: 236 EAK-EQVNKIIQSIHFIGTFTVEFFIDSNNQLYVNEIAPR 274
>pdb|3AW8|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
pdb|3AW8|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
Length = 369
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 22/183 (12%)
Query: 120 IEEAVKLADELGFPVMIKATAGG-GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYL 178
+EE +K +G P ++K GG G+G L + +E + EA A G G+ L
Sbjct: 123 LEEGLK---RVGLPALLKTRRGGYDGKGQALVRTEEEAL--------EALKALGGRGLIL 171
Query: 179 EKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQK---LLEEAPSPALTPELRKAMG 235
E +V R + + + G V + ++ R+ L AP+P + L+K
Sbjct: 172 EGFVPFDREVSLLAVRGRTGEVAFY----PLVENRHWGGILRLSLAPAPGASEALQKKAE 227
Query: 236 DXXXXXXXSIGYIGVGTVEFL-LDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHV 294
++ Y+GV +EF + E F EM R+ T + E +
Sbjct: 228 AYALRAMEALDYVGVLALEFFQVGE--ELLFNEMAPRVHNSGHWTIEGAETSQFENHLRA 285
Query: 295 AMG 297
+G
Sbjct: 286 VLG 288
>pdb|3R23|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis
pdb|3R23|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis
pdb|3R5X|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
pdb|3R5X|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
pdb|3R5X|C Chain C, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
pdb|3R5X|D Chain D, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
Length = 307
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 128 DELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG-VYLEKYVQ 183
D+LGFP+++K +GG G+++ + DE + L+ F D V +EKY++
Sbjct: 130 DKLGFPLVVKPNSGGSSVGVKIVYDKDELISXLE-------TVFEWDSEVVIEKYIK 179
>pdb|3V4Z|A Chain A, D-Alanine--D-Alanine Ligase From Yersinia Pestis
pdb|3V4Z|B Chain B, D-Alanine--D-Alanine Ligase From Yersinia Pestis
Length = 309
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 14/160 (8%)
Query: 116 ESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG 175
E++ EE V +LG P+++K + G GM E K L +A F +D
Sbjct: 126 ETLSPEELVACVAKLGLPLIVKPSHEGSSVGMSKVDHASELQKALVEA-------FQHDS 178
Query: 176 -VYLEKYVQNPRHIEFQVLADKYGNVVHFGE----RDCSIQRRNQKLLEEAPSPALTPEL 230
V +EK++ P +L D+ + D + + K PS L+ E
Sbjct: 179 DVLIEKWLSGPE-FTVAILGDEVLPSIRIQPPGVFYDYDAKYLSDKTQYFCPS-GLSDES 236
Query: 231 RKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNT 270
+ + ++ G G V+ + D G FY +E+NT
Sbjct: 237 EQQLAALALQAYHALDCSGWGRVDVMQDRDGHFYLLEVNT 276
>pdb|1UC9|A Chain A, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
pdb|1UC9|B Chain B, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx,
From Thermus Thermophilus Hb8
Length = 280
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 19/144 (13%)
Query: 67 VTCRQEKILVANRGEIAVRVIRTAHEMGIPCV----AVYSTIDKDALHVKLADESVCI-- 120
VT E+ + +RG A R + +GIP V + + DK A V LA +
Sbjct: 49 VTVALERCVSQSRGLAAARYLTA---LGIPVVNRPEVIEACGDKWATSVALAKAGLPQPK 105
Query: 121 -------EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGN 173
EEA++L + G+PV++K G GR E F +
Sbjct: 106 TALATDREEALRLMEAFGYPVVLKPVIGSWGR--LXXXXXXXXXXXXXXXXKEVLGGFQH 163
Query: 174 DGVYLEKYVQNP-RHIEFQVLADK 196
Y+++YV+ P R I V+ ++
Sbjct: 164 QLFYIQEYVEKPGRDIRVFVVGER 187
>pdb|2CZG|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
Ot3
pdb|2CZG|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
Ot3
pdb|2DWC|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase From Pyrococcus Horikoshii Ot3
Complexed With Adp
pdb|2DWC|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase From Pyrococcus Horikoshii Ot3
Complexed With Adp
Length = 433
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 117 SVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGV 176
+ ++E + +++G+P KA G+G K P++ K ++AK++A +
Sbjct: 142 ATTLDELYEACEKIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGS------ 195
Query: 177 YLEKYVQNPRHIEFQVLADKYGNVVHFGE 205
EK + HI+F V + V HF E
Sbjct: 196 -AEKIIVE-EHIDFDVEVTELA-VRHFDE 221
>pdb|4E4T|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase, Atpase Subunit From Burkholderia Ambifaria
pdb|4E4T|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase, Atpase Subunit From Burkholderia Ambifaria
Length = 419
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 244 SIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQI 292
++GY+GV VEF + E GSF EM R T + E+Q+
Sbjct: 276 TLGYVGVLCVEFFVLEDGSFVANEMAPRPHNSGHYTVDACATSQFEQQV 324
>pdb|2R84|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp And Aicar
pdb|2R84|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp And Aicar
pdb|2R85|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp
pdb|2R85|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp
pdb|2R86|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Atp
pdb|2R86|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Atp
pdb|2R87|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|C Chain C, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|D Chain D, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|E Chain E, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|F Chain F, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
Length = 334
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 105 DKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVK 158
D++ L + + E + D++ PV++K GG+G LAK+P++F +
Sbjct: 100 DRNLERKWLKKAGIRVPEVYEDPDDIEKPVIVKPHGAKGGKGYFLAKDPEDFWR 153
>pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of
Vancomycin-Resistant Leuconostoc Mesenteroides
pdb|1EHI|B Chain B, D-Alanine:d-Lactate Ligase (Lmddl2) Of
Vancomycin-Resistant Leuconostoc Mesenteroides
Length = 377
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 61/159 (38%), Gaps = 20/159 (12%)
Query: 125 KLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGND-GVYLEKYVQ 183
K+ ELG V +KA G G+ +E+ + L + F D V +E+ V
Sbjct: 168 KIVAELGNIVFVKAANQGSSVGISRVTNAEEYTEALSDS-------FQYDYKVLIEEAVN 220
Query: 184 NPRHIEFQVLADKYGNVVHFGERDCSIQ-------RRNQKLLEEAPS----PA-LTPELR 231
R +E V+ + V G Q N K ++ + PA L+PE+
Sbjct: 221 GARELEVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVT 280
Query: 232 KAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNT 270
K + + G ++FLLDE Y E NT
Sbjct: 281 KEVKQMALDAYKVLNLRGEARMDFLLDENNVPYLGEPNT 319
>pdb|3K5I|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
pdb|3K5I|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
pdb|3K5I|C Chain C, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
pdb|3K5I|D Chain D, Crystal Structure Of N5-Carboxyaminoimidazole Synthase
From Aspergillus Clavatus In Complex With Adp And 5-
Aminoimadazole Ribonucleotide
Length = 403
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 11/153 (7%)
Query: 122 EAVKLADELGFPVMIKA-TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 180
E K+ ++LG+P+M+K+ T GRG D+ EA A + +Y EK
Sbjct: 151 ELAKVGEQLGYPLMLKSKTMAYDGRGNFRVNSQDDI--------PEALEALKDRPLYAEK 202
Query: 181 YVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXX 240
+ +E V+ K + V ++Q + L AP+ ++ + + +
Sbjct: 203 WAY--FKMELAVIVVKTKDEVLSYPTVETVQEDSICKLVYAPARNVSDAINQKAQELARK 260
Query: 241 XXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQ 273
+ GV VE L E S E+ +RI
Sbjct: 261 AVAAFDGKGVFGVEMFLLEDDSIMLCEIASRIH 293
>pdb|3K5H|A Chain A, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
pdb|3K5H|B Chain B, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
pdb|3K5H|C Chain C, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
pdb|3K5H|D Chain D, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide
Synthase From Asperigillus Clavatus Complexed With Atp
Length = 403
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 11/153 (7%)
Query: 122 EAVKLADELGFPVMIKA-TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 180
E K+ ++LG+P+M+K+ T GRG D+ EA A + +Y EK
Sbjct: 151 ELAKVGEQLGYPLMLKSKTMAYDGRGNFRVNSQDDI--------PEALEALKDRPLYAEK 202
Query: 181 YVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXXX 240
+ +E V+ K + V ++Q + L AP+ ++ + + +
Sbjct: 203 WAY--FKMELAVIVVKTKDEVLSYPTVETVQEDSICKLVYAPARNVSDAINQKAQELARK 260
Query: 241 XXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQ 273
+ GV VE L E S E+ +RI
Sbjct: 261 AVAAFDGKGVFGVEMFLLEDDSIMLCEIASRIH 293
>pdb|4IZO|A Chain A, Crystal Structure Of Kinase Phosphoribosylaminoimidazole
Carboxylase, Atpase Subunit From Burkholderia
Thailandensis
Length = 419
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 218 LEEAPSPALTPELRKAMGDXXXXXXXSIGYIGVGTVEFLLDERGSFYFMEMNTR 271
L P+PA + L + S+ Y+GV VEF + E GS EM R
Sbjct: 250 LSVVPAPAASDALVRDAQQAAARIADSLDYVGVLCVEFFVLEDGSLVANEMAPR 303
>pdb|1TUE|B Chain B, The X-Ray Structure Of The Papillomavirus Helicase In
Complex With Its Molecular Matchmaker E2
pdb|1TUE|E Chain E, The X-Ray Structure Of The Papillomavirus Helicase In
Complex With Its Molecular Matchmaker E2
pdb|1TUE|G Chain G, The X-Ray Structure Of The Papillomavirus Helicase In
Complex With Its Molecular Matchmaker E2
pdb|1TUE|J Chain J, The X-Ray Structure Of The Papillomavirus Helicase In
Complex With Its Molecular Matchmaker E2
pdb|1TUE|L Chain L, The X-Ray Structure Of The Papillomavirus Helicase In
Complex With Its Molecular Matchmaker E2
pdb|1TUE|Q Chain Q, The X-Ray Structure Of The Papillomavirus Helicase In
Complex With Its Molecular Matchmaker E2
Length = 218
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 166 EAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNV----VHFGER--DCS 209
+ A + G+Y K N +IEF+ +KYGN VHFG DC+
Sbjct: 155 KTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHFGNNVIDCN 204
>pdb|1IOV|A Chain A, Complex Of D-Ala:d-Ala Ligase With Adp And A Phosphoryl
Phosphonate
pdb|2DLN|A Chain A, Vancomycin Resistance: Structure Of D-Alanine:d-Alanine
Ligase At 2.3 Angstroms Resolution
Length = 306
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 244 SIGYIGVGTVEFLLDERGSFYFMEMNT 270
++G G G ++ +LD G FY +E NT
Sbjct: 247 TLGCKGWGRIDVMLDSDGQFYLLEANT 273
>pdb|1IOW|A Chain A, Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A
Phosphoryl Phosphinate
Length = 306
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 244 SIGYIGVGTVEFLLDERGSFYFMEMNT 270
++G G G ++ +LD G FY +E NT
Sbjct: 247 TLGCKGWGRIDVMLDSDGQFYLLEANT 273
>pdb|1QQH|A Chain A, 2.1 A Crystal Structure Of The Human Papillomavirus Type
18 E2 Activation Domain
Length = 144
Score = 29.6 bits (65), Expect = 3.7, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 166 EAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNV----VHFGER--DCS 209
+ A + G+Y K N +IEF+ +KYGN VHFG DC+
Sbjct: 83 KTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHFGNNVIDCN 132
>pdb|3UFX|B Chain B, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|E Chain E, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|G Chain G, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|I Chain I, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
Length = 397
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 121 EEAVKLADELGFPVMIKATAGGGGR----GMRLAKEPDE 155
EEA ++A+E G V+IKA GGR G++LA P E
Sbjct: 29 EEAKRIAEEFGKRVVIKAQVHVGGRGKAGGVKLADTPQE 67
>pdb|3RD6|A Chain A, Crystal Structure Of Mll3558 Protein From Rhizobium Loti.
Northeast Structural Genomics Consortium Target Id
Mlr403
pdb|3RD6|B Chain B, Crystal Structure Of Mll3558 Protein From Rhizobium Loti.
Northeast Structural Genomics Consortium Target Id
Mlr403
Length = 161
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 326 NFRPGPGRITAYLPAGGPFVRMDSH---VYPDYVVPPSYDSLLG 366
+FR G G ++ + GGP VR+D+ + PD + SY +G
Sbjct: 51 DFRVGGGEVSRFSYGGGPEVRLDAQFQDIVPDQRIVFSYRMAIG 94
>pdb|4HKQ|A Chain A, Protein Dna Complex
Length = 681
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 331 PGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTI 390
P ++ +L G F R+ + + P + G L W P ++KA + +K+AL
Sbjct: 307 PRQLREFLGTAG-FCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAP 365
Query: 391 ITGVPTTIEYHKLILD 406
G+P + +L +D
Sbjct: 366 ALGLPDLTKPFELFVD 381
>pdb|1RW3|A Chain A, The Crystal Structure Of The Monomeric Reverse
Transcriptase From Moloney Murine Leukemia Virus
Length = 455
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 366 GKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILD 406
G L W P ++KA + +K+AL G+P + +L +D
Sbjct: 312 GTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVD 352
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,440,769
Number of Sequences: 62578
Number of extensions: 513516
Number of successful extensions: 1378
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1206
Number of HSP's gapped (non-prelim): 104
length of query: 447
length of database: 14,973,337
effective HSP length: 102
effective length of query: 345
effective length of database: 8,590,381
effective search space: 2963681445
effective search space used: 2963681445
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)