Query 013241
Match_columns 447
No_of_seqs 449 out of 3165
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 01:51:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013241.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013241hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4770 Acetyl/propionyl-CoA c 100.0 2.5E-98 5E-103 752.1 33.2 361 70-430 1-451 (645)
2 KOG0238 3-Methylcrotonyl-CoA c 100.0 1.3E-95 3E-100 721.1 29.2 362 74-435 1-453 (670)
3 COG1038 PycA Pyruvate carboxyl 100.0 2.6E-85 5.7E-90 674.1 34.7 362 69-430 5-464 (1149)
4 COG0439 AccC Biotin carboxylas 100.0 9.5E-80 2.1E-84 626.5 37.6 357 70-426 1-447 (449)
5 PRK08654 pyruvate carboxylase 100.0 3.1E-76 6.7E-81 618.4 40.1 353 70-423 1-443 (499)
6 KOG0369 Pyruvate carboxylase [ 100.0 3.1E-77 6.6E-82 603.8 30.1 369 71-439 33-497 (1176)
7 TIGR01235 pyruv_carbox pyruvat 100.0 1.4E-72 2.9E-77 631.2 38.3 355 73-427 1-455 (1143)
8 PRK08463 acetyl-CoA carboxylas 100.0 8.6E-72 1.9E-76 584.3 39.2 361 70-430 1-451 (478)
9 PRK07178 pyruvate carboxylase 100.0 2.5E-71 5.5E-76 580.3 40.6 357 70-427 1-446 (472)
10 PRK12833 acetyl-CoA carboxylas 100.0 2.3E-70 5E-75 572.3 40.8 363 69-432 3-456 (467)
11 PRK12999 pyruvate carboxylase; 100.0 4.6E-68 9.9E-73 597.5 41.6 359 70-428 4-460 (1146)
12 PRK05586 biotin carboxylase; V 100.0 1.2E-66 2.6E-71 542.3 39.0 355 70-424 1-445 (447)
13 TIGR00514 accC acetyl-CoA carb 100.0 5.9E-65 1.3E-69 530.1 39.5 356 70-425 1-446 (449)
14 PRK08462 biotin carboxylase; V 100.0 9.4E-63 2E-67 513.2 39.7 353 70-424 3-445 (445)
15 PRK08591 acetyl-CoA carboxylas 100.0 2.2E-62 4.9E-67 511.3 39.4 356 70-425 1-446 (451)
16 TIGR02712 urea_carbox urea car 100.0 9.1E-59 2E-63 524.9 41.2 351 71-423 1-443 (1201)
17 KOG0368 Acetyl-CoA carboxylase 100.0 1E-58 2.2E-63 497.3 28.5 304 121-428 229-555 (2196)
18 PRK06111 acetyl-CoA carboxylas 100.0 2.8E-52 6.1E-57 435.2 39.7 355 70-425 1-445 (450)
19 PF02786 CPSase_L_D2: Carbamoy 100.0 1.8E-42 3.9E-47 324.2 24.5 203 85-301 4-209 (211)
20 PLN02948 phosphoribosylaminoim 100.0 7.5E-32 1.6E-36 287.0 33.7 305 69-392 20-402 (577)
21 TIGR01142 purT phosphoribosylg 100.0 1.6E-31 3.5E-36 272.9 31.9 251 121-392 126-380 (380)
22 PRK06019 phosphoribosylaminoim 100.0 6.3E-31 1.4E-35 267.8 31.9 289 71-387 2-366 (372)
23 TIGR01369 CPSaseII_lrg carbamo 100.0 2.6E-31 5.7E-36 301.0 31.0 260 121-408 152-426 (1050)
24 PLN02735 carbamoyl-phosphate s 100.0 5.2E-31 1.1E-35 297.9 30.8 247 121-388 169-420 (1102)
25 PF02785 Biotin_carb_C: Biotin 100.0 6.2E-33 1.3E-37 230.5 8.6 107 315-421 1-107 (107)
26 PRK09288 purT phosphoribosylgl 100.0 2.9E-29 6.3E-34 257.6 33.9 255 121-393 139-394 (395)
27 PLN02735 carbamoyl-phosphate s 100.0 4.5E-30 9.8E-35 290.4 28.3 252 70-329 573-932 (1102)
28 smart00878 Biotin_carb_C Bioti 100.0 1.7E-31 3.6E-36 222.4 10.4 107 315-421 1-107 (107)
29 PRK02186 argininosuccinate lya 100.0 5.4E-29 1.2E-33 278.6 31.6 294 79-392 77-395 (887)
30 TIGR01161 purK phosphoribosyla 100.0 1E-28 2.2E-33 250.0 30.1 275 73-374 1-352 (352)
31 PRK05294 carB carbamoyl phosph 100.0 7.7E-29 1.7E-33 281.8 30.6 264 121-408 153-428 (1066)
32 PRK07206 hypothetical protein; 100.0 2.5E-28 5.4E-33 252.4 30.8 253 121-386 133-405 (416)
33 PRK13790 phosphoribosylamine-- 100.0 5E-28 1.1E-32 246.9 29.0 306 69-394 26-365 (379)
34 PRK12815 carB carbamoyl phosph 100.0 1.1E-27 2.3E-32 271.9 31.7 262 121-408 153-428 (1068)
35 PLN02257 phosphoribosylamine-- 100.0 2.7E-27 5.8E-32 244.7 31.6 318 68-394 60-414 (434)
36 PRK00885 phosphoribosylamine-- 100.0 3.5E-27 7.6E-32 244.2 30.9 313 71-394 63-407 (420)
37 COG0027 PurT Formate-dependent 100.0 2.1E-27 4.6E-32 225.1 24.6 309 66-392 7-393 (394)
38 PRK13789 phosphoribosylamine-- 100.0 1.1E-26 2.4E-31 239.9 31.2 300 84-394 82-415 (426)
39 COG0458 CarB Carbamoylphosphat 100.0 4.9E-27 1.1E-31 232.5 24.0 299 55-387 72-388 (400)
40 TIGR00877 purD phosphoribosyla 100.0 6.3E-26 1.4E-30 235.0 30.9 310 70-393 64-410 (423)
41 PRK06395 phosphoribosylamine-- 99.9 5.3E-25 1.1E-29 228.0 30.0 311 69-393 64-410 (435)
42 TIGR01369 CPSaseII_lrg carbamo 99.9 5.8E-25 1.3E-29 249.4 30.0 286 71-387 630-931 (1050)
43 PRK12815 carB carbamoyl phosph 99.9 2.2E-24 4.8E-29 244.8 31.8 285 70-387 630-931 (1068)
44 PRK05294 carB carbamoyl phosph 99.9 1.2E-24 2.5E-29 247.7 29.6 285 71-386 630-930 (1066)
45 PRK14569 D-alanyl-alanine synt 99.9 7.7E-26 1.7E-30 223.5 16.2 217 27-295 69-292 (296)
46 PRK06524 biotin carboxylase-li 99.9 5.8E-25 1.3E-29 226.0 22.7 222 72-306 108-361 (493)
47 PRK05784 phosphoribosylamine-- 99.9 9.1E-24 2E-28 220.7 31.1 300 85-394 84-435 (486)
48 COG0026 PurK Phosphoribosylami 99.9 1.7E-23 3.8E-28 205.0 29.1 290 71-387 1-366 (375)
49 PRK14570 D-alanyl-alanine synt 99.9 5.2E-25 1.1E-29 223.0 17.2 228 27-296 100-347 (364)
50 PRK01966 ddl D-alanyl-alanine 99.9 1.5E-24 3.2E-29 217.9 17.0 222 28-294 95-327 (333)
51 PRK14568 vanB D-alanine--D-lac 99.9 3.1E-24 6.7E-29 216.4 16.7 217 27-293 103-335 (343)
52 PF13535 ATP-grasp_4: ATP-gras 99.9 2.3E-23 4.9E-28 190.4 20.3 171 85-276 7-183 (184)
53 PRK14572 D-alanyl-alanine synt 99.9 1.6E-23 3.4E-28 211.6 20.1 234 18-294 92-341 (347)
54 PF07478 Dala_Dala_lig_C: D-al 99.9 6.7E-23 1.5E-27 191.3 22.0 187 90-294 2-201 (203)
55 PRK12767 carbamoyl phosphate s 99.9 1.1E-22 2.3E-27 203.6 23.1 198 85-302 86-299 (326)
56 PF02222 ATP-grasp: ATP-grasp 99.9 2.7E-22 5.8E-27 181.7 22.3 166 90-279 1-168 (172)
57 PRK01372 ddl D-alanine--D-alan 99.9 6.3E-23 1.4E-27 203.4 19.3 220 27-294 69-296 (304)
58 TIGR01205 D_ala_D_alaTIGR D-al 99.9 4.6E-23 9.9E-28 205.3 17.6 223 28-295 77-312 (315)
59 PRK14573 bifunctional D-alanyl 99.9 9.5E-23 2.1E-27 226.8 18.5 227 27-293 539-781 (809)
60 PRK14571 D-alanyl-alanine synt 99.9 1E-22 2.2E-27 201.6 15.3 214 28-296 67-296 (299)
61 COG0151 PurD Phosphoribosylami 99.9 7.9E-21 1.7E-25 188.9 26.4 313 69-394 62-412 (428)
62 PF15632 ATPgrasp_Ter: ATP-gra 99.9 7.8E-21 1.7E-25 188.0 22.2 215 73-303 68-311 (329)
63 KOG0370 Multifunctional pyrimi 99.9 1.6E-22 3.5E-27 212.7 8.2 305 53-395 452-776 (1435)
64 COG2232 Predicted ATP-dependen 99.9 5.5E-20 1.2E-24 176.0 20.2 218 132-389 150-372 (389)
65 TIGR00768 rimK_fam alpha-L-glu 99.8 4.9E-19 1.1E-23 172.6 21.8 200 81-294 60-276 (277)
66 PRK10446 ribosomal protein S6 99.8 7.2E-19 1.6E-23 174.2 20.9 208 71-297 58-288 (300)
67 PRK06849 hypothetical protein; 99.8 6.6E-19 1.4E-23 180.7 19.8 193 71-280 4-284 (389)
68 TIGR02144 LysX_arch Lysine bio 99.8 3.5E-18 7.5E-23 167.4 21.1 201 83-296 61-276 (280)
69 PRK13277 5-formaminoimidazole- 99.8 3.5E-18 7.6E-23 169.3 19.5 199 100-301 121-349 (366)
70 PF01071 GARS_A: Phosphoribosy 99.8 7.2E-18 1.6E-22 154.5 19.2 169 87-274 7-191 (194)
71 COG1181 DdlA D-alanine-D-alani 99.8 1.9E-18 4.1E-23 171.1 14.6 219 31-294 78-312 (317)
72 PF02655 ATP-grasp_3: ATP-gras 99.8 6.4E-19 1.4E-23 158.8 10.3 128 130-275 30-161 (161)
73 PRK13278 purP 5-formaminoimida 99.8 7.2E-18 1.6E-22 169.3 16.0 201 72-275 86-315 (358)
74 PF08443 RimK: RimK-like ATP-g 99.8 3.1E-17 6.7E-22 151.9 17.5 178 85-294 6-189 (190)
75 KOG0370 Multifunctional pyrimi 99.7 1.6E-16 3.6E-21 168.0 19.5 227 58-304 998-1237(1435)
76 KOG0237 Glycinamide ribonucleo 99.7 1.4E-15 2.9E-20 154.8 24.6 290 88-401 114-425 (788)
77 COG0189 RimK Glutathione synth 99.6 6.1E-15 1.3E-19 146.4 17.8 199 83-295 93-311 (318)
78 PRK14016 cyanophycin synthetas 99.6 1.2E-14 2.6E-19 159.5 18.0 203 83-296 162-472 (727)
79 TIGR03103 trio_acet_GNAT GNAT- 99.6 4.7E-15 1E-19 157.9 13.8 182 87-296 302-541 (547)
80 COG3919 Predicted ATP-grasp en 99.6 3.6E-15 7.8E-20 141.1 7.1 185 87-300 119-315 (415)
81 TIGR02068 cya_phycin_syn cyano 99.5 3.7E-13 8E-18 150.5 20.0 185 87-296 218-471 (864)
82 COG1821 Predicted ATP-utilizin 99.5 4E-14 8.7E-19 131.6 9.2 189 85-300 94-284 (307)
83 TIGR01435 glu_cys_lig_rel glut 99.5 7.6E-13 1.6E-17 143.3 19.5 182 88-294 481-735 (737)
84 PRK02471 bifunctional glutamat 99.5 2.1E-12 4.6E-17 141.6 19.9 183 88-295 494-750 (752)
85 TIGR02291 rimK_rel_E_lig alpha 99.3 2.8E-10 6.2E-15 112.4 21.3 193 87-296 42-293 (317)
86 PRK12458 glutathione synthetas 99.3 1.1E-10 2.3E-15 117.6 17.7 184 91-296 111-322 (338)
87 PLN02941 inositol-tetrakisphos 99.3 7.9E-11 1.7E-15 117.1 15.4 165 90-274 88-306 (328)
88 PRK05246 glutathione synthetas 99.3 3.8E-10 8.3E-15 112.7 19.6 196 82-296 97-310 (316)
89 TIGR01380 glut_syn glutathione 99.2 4.8E-10 1.1E-14 111.7 19.0 195 82-295 96-308 (312)
90 PF14398 ATPgrasp_YheCD: YheC/ 99.0 1.3E-08 2.9E-13 98.9 16.0 175 91-274 5-235 (262)
91 COG1759 5-formaminoimidazole-4 98.9 4.2E-08 9.1E-13 94.6 16.3 150 128-279 147-322 (361)
92 TIGR01016 sucCoAbeta succinyl- 98.9 1.2E-07 2.6E-12 97.4 18.1 173 87-273 9-219 (386)
93 PF00289 CPSase_L_chain: Carba 98.8 7.9E-09 1.7E-13 86.8 5.8 62 70-131 1-74 (110)
94 PRK00696 sucC succinyl-CoA syn 98.8 3.2E-07 7E-12 94.3 17.2 104 87-204 9-125 (388)
95 PF14397 ATPgrasp_ST: Sugar-tr 98.6 2.7E-06 5.9E-11 83.7 18.0 182 85-272 29-258 (285)
96 PF02955 GSH-S_ATP: Prokaryoti 98.6 5E-07 1.1E-11 82.0 10.3 134 121-271 22-161 (173)
97 PF13549 ATP-grasp_5: ATP-gras 98.5 1.4E-06 3E-11 82.4 11.5 108 85-206 14-132 (222)
98 PF02750 Synapsin_C: Synapsin, 98.0 0.00022 4.7E-09 65.0 14.3 128 128-271 47-177 (203)
99 PF03133 TTL: Tubulin-tyrosine 98.0 4.8E-05 1E-09 75.1 10.4 55 133-196 67-128 (292)
100 PRK14046 malate--CoA ligase su 97.9 0.0006 1.3E-08 70.1 17.5 104 87-204 9-125 (392)
101 PF05770 Ins134_P3_kin: Inosit 97.8 0.00012 2.6E-09 72.2 10.2 127 128-273 135-290 (307)
102 PLN00124 succinyl-CoA ligase [ 97.7 0.0011 2.5E-08 68.4 16.4 104 81-201 32-158 (422)
103 PF14305 ATPgrasp_TupA: TupA-l 97.5 0.0036 7.9E-08 60.0 15.4 141 128-275 53-221 (239)
104 PF06973 DUF1297: Domain of un 97.5 0.0011 2.4E-08 59.8 10.9 102 174-277 21-147 (188)
105 PLN02235 ATP citrate (pro-S)-l 97.1 0.021 4.6E-07 58.7 16.0 171 88-273 13-219 (423)
106 COG0045 SucC Succinyl-CoA synt 97.0 0.0054 1.2E-07 61.6 10.2 101 87-201 9-119 (387)
107 PF08442 ATP-grasp_2: ATP-gras 96.8 0.0028 6E-08 59.2 6.2 99 87-199 8-118 (202)
108 KOG3895 Synaptic vesicle prote 96.6 0.0062 1.3E-07 60.0 7.7 176 81-270 172-365 (488)
109 PF14243 DUF4343: Domain of un 96.5 0.041 9E-07 47.6 11.5 114 132-272 2-116 (130)
110 PF11379 DUF3182: Protein of u 95.2 0.17 3.6E-06 50.2 10.3 89 121-213 124-214 (355)
111 KOG2156 Tubulin-tyrosine ligas 94.3 0.22 4.8E-06 51.9 9.0 50 121-184 294-344 (662)
112 KOG2157 Predicted tubulin-tyro 94.2 0.17 3.7E-06 53.3 8.2 54 131-185 199-252 (497)
113 PF14403 CP_ATPgrasp_2: Circul 91.8 0.31 6.7E-06 50.8 5.8 65 122-195 329-395 (445)
114 PF07065 D123: D123; InterPro 91.6 5.7 0.00012 39.4 14.2 139 121-272 75-239 (299)
115 PRK08057 cobalt-precorrin-6x r 80.4 25 0.00054 33.9 11.5 92 70-161 1-125 (248)
116 PRK04148 hypothetical protein; 78.6 5.5 0.00012 34.6 5.7 75 72-150 18-122 (134)
117 PF02843 GARS_C: Phosphoribosy 77.3 6.1 0.00013 32.0 5.3 33 362-394 50-82 (93)
118 PRK05849 hypothetical protein; 75.3 1.5E+02 0.0033 33.6 18.8 132 131-269 55-213 (783)
119 TIGR00715 precor6x_red precorr 69.4 22 0.00048 34.4 8.1 86 73-160 2-122 (256)
120 PF04174 CP_ATPgrasp_1: A circ 67.3 8.2 0.00018 38.8 4.7 59 92-165 263-322 (330)
121 PRK06719 precorrin-2 dehydroge 67.0 92 0.002 27.6 11.1 36 65-100 7-42 (157)
122 COG1255 Uncharacterized protei 66.6 17 0.00036 30.8 5.5 77 73-150 16-115 (129)
123 COG1181 DdlA D-alanine-D-alani 66.1 2.1 4.5E-05 42.9 0.2 115 83-202 23-157 (317)
124 TIGR02049 gshA_ferroox glutama 65.9 11 0.00024 38.2 5.2 52 133-184 258-313 (403)
125 PRK06718 precorrin-2 dehydroge 62.2 1.3E+02 0.0029 27.8 14.0 36 65-100 4-39 (202)
126 TIGR00789 flhB_rel flhB C-term 61.3 14 0.00029 29.3 4.0 29 71-99 17-45 (82)
127 PF02571 CbiJ: Precorrin-6x re 57.7 1.1E+02 0.0024 29.4 10.5 91 72-162 1-127 (249)
128 KOG2799 Succinyl-CoA synthetas 57.2 30 0.00065 35.0 6.4 66 85-164 29-106 (434)
129 PF01488 Shikimate_DH: Shikima 56.7 42 0.00092 28.8 6.8 36 70-106 11-46 (135)
130 COG2099 CobK Precorrin-6x redu 56.3 1.4E+02 0.003 28.9 10.6 92 71-162 2-126 (257)
131 PRK14686 hypothetical protein; 55.6 36 0.00078 28.9 5.9 44 232-275 9-60 (119)
132 PF08886 GshA: Glutamate-cyste 55.4 9.2 0.0002 38.8 2.6 51 134-184 263-316 (404)
133 PRK14674 hypothetical protein; 53.0 38 0.00082 29.4 5.7 43 233-275 10-60 (133)
134 PF03681 UPF0150: Uncharacteri 52.6 14 0.0003 25.7 2.4 21 368-388 24-44 (48)
135 PRK06464 phosphoenolpyruvate s 50.7 4.3E+02 0.0093 30.1 18.3 43 225-269 288-331 (795)
136 TIGR03884 sel_bind_Methan sele 50.1 17 0.00037 28.0 2.7 26 365-390 17-42 (74)
137 PRK14680 hypothetical protein; 49.9 56 0.0012 28.4 6.3 43 232-274 10-60 (134)
138 PRK06988 putative formyltransf 49.4 77 0.0017 31.6 8.1 59 71-136 2-60 (312)
139 PF02826 2-Hacid_dh_C: D-isome 49.3 44 0.00095 30.2 5.9 36 70-105 35-70 (178)
140 PRK14688 hypothetical protein; 47.6 57 0.0012 27.8 5.9 42 233-274 11-60 (121)
141 PRK09424 pntA NAD(P) transhydr 47.0 1E+02 0.0022 33.0 9.0 54 69-139 163-217 (509)
142 COG2308 Uncharacterized conser 46.3 33 0.00071 35.7 4.9 59 94-167 343-403 (488)
143 PF04174 CP_ATPgrasp_1: A circ 46.3 24 0.00052 35.5 3.9 27 249-275 69-95 (330)
144 TIGR00561 pntA NAD(P) transhyd 46.1 1.9E+02 0.0042 31.0 10.9 31 70-100 163-193 (511)
145 TIGR00252 conserved hypothetic 46.0 66 0.0014 27.3 6.0 42 233-274 11-60 (119)
146 PRK14684 hypothetical protein; 45.1 74 0.0016 27.0 6.2 43 232-274 10-60 (120)
147 TIGR00637 ModE_repress ModE mo 45.1 51 0.0011 26.9 5.1 45 122-166 36-80 (99)
148 KOG1057 Arp2/3 complex-interac 44.9 8.9 0.00019 42.2 0.7 86 174-270 229-321 (1018)
149 KOG2158 Tubulin-tyrosine ligas 44.7 14 0.00029 38.5 1.9 38 121-158 216-253 (565)
150 cd00859 HisRS_anticodon HisRS 44.2 91 0.002 23.6 6.4 50 73-136 3-56 (91)
151 PRK12767 carbamoyl phosphate s 44.2 59 0.0013 32.0 6.5 63 71-136 1-74 (326)
152 PRK13398 3-deoxy-7-phosphohept 43.9 92 0.002 30.3 7.5 35 121-164 124-158 (266)
153 PRK13397 3-deoxy-7-phosphohept 43.7 1.3E+02 0.0027 29.1 8.3 87 80-184 64-162 (250)
154 TIGR01470 cysG_Nterm siroheme 43.7 2.7E+02 0.0058 25.8 12.8 35 66-100 4-38 (205)
155 PRK14682 hypothetical protein; 43.6 82 0.0018 26.6 6.2 42 233-274 9-59 (117)
156 PRK12497 hypothetical protein; 43.3 68 0.0015 27.1 5.8 42 233-274 11-60 (119)
157 PF00070 Pyr_redox: Pyridine n 42.9 49 0.0011 25.3 4.5 30 73-102 1-30 (80)
158 PRK14683 hypothetical protein; 42.0 48 0.001 28.3 4.6 39 234-272 19-65 (122)
159 TIGR01361 DAHP_synth_Bsub phos 41.4 1.3E+02 0.0028 29.2 8.1 83 81-178 75-165 (260)
160 PRK12457 2-dehydro-3-deoxyphos 41.1 1.5E+02 0.0033 29.1 8.3 82 80-180 71-166 (281)
161 PRK14679 hypothetical protein; 40.7 66 0.0014 27.7 5.3 43 233-275 20-70 (128)
162 KOG1447 GTP-specific succinyl- 40.0 45 0.00097 32.4 4.4 86 15-134 308-394 (412)
163 PRK10669 putative cation:proto 39.7 51 0.0011 35.6 5.5 33 71-103 417-449 (558)
164 TIGR01362 KDO8P_synth 3-deoxy- 38.9 1.7E+02 0.0036 28.4 8.2 83 80-180 57-152 (258)
165 PRK05198 2-dehydro-3-deoxyphos 38.8 1.7E+02 0.0037 28.4 8.3 83 80-180 65-160 (264)
166 PF02254 TrkA_N: TrkA-N domain 38.8 70 0.0015 26.1 5.2 29 74-102 1-29 (116)
167 PLN03033 2-dehydro-3-deoxyphos 38.6 1.1E+02 0.0023 30.2 6.9 81 81-180 73-165 (290)
168 PF01408 GFO_IDH_MocA: Oxidore 38.4 2.1E+02 0.0047 23.1 10.1 36 121-166 76-112 (120)
169 PRK14678 hypothetical protein; 37.1 64 0.0014 27.4 4.6 44 232-275 10-61 (120)
170 TIGR03586 PseI pseudaminic aci 37.0 1.5E+02 0.0033 29.8 8.0 86 81-184 77-172 (327)
171 COG2257 Uncharacterized homolo 35.7 51 0.0011 26.5 3.4 26 72-97 23-48 (92)
172 KOG2983 Uncharacterized conser 35.7 4.3E+02 0.0093 25.8 10.3 141 121-274 89-254 (334)
173 PRK03562 glutathione-regulated 35.2 64 0.0014 35.5 5.5 34 71-104 400-433 (621)
174 PRK14685 hypothetical protein; 35.0 1.2E+02 0.0025 27.8 6.1 46 230-275 44-97 (177)
175 COG0478 RIO-like serine/threon 35.0 92 0.002 30.7 5.8 59 227-286 204-264 (304)
176 cd01080 NAD_bind_m-THF_DH_Cycl 35.0 75 0.0016 28.6 5.0 26 71-96 44-70 (168)
177 PRK14675 hypothetical protein; 34.3 1.2E+02 0.0026 25.9 5.9 43 233-275 13-63 (125)
178 PRK08673 3-deoxy-7-phosphohept 34.2 2.4E+02 0.0051 28.6 8.8 46 121-180 190-236 (335)
179 PRK03659 glutathione-regulated 34.1 70 0.0015 35.0 5.5 33 71-103 400-432 (601)
180 PRK14676 hypothetical protein; 34.1 1E+02 0.0022 26.1 5.3 43 233-275 12-62 (117)
181 PRK14681 hypothetical protein; 33.4 1.2E+02 0.0026 27.1 5.9 43 233-275 48-99 (158)
182 PF02021 UPF0102: Uncharacteri 33.3 96 0.0021 25.0 4.9 41 235-275 3-51 (93)
183 COG1648 CysG Siroheme synthase 33.2 1.7E+02 0.0036 27.5 7.2 36 65-100 6-41 (210)
184 PF03686 UPF0146: Uncharacteri 33.0 93 0.002 26.8 4.9 31 121-151 85-116 (127)
185 cd00401 AdoHcyase S-adenosyl-L 32.8 1.1E+02 0.0023 32.0 6.3 32 69-100 200-231 (413)
186 PRK13396 3-deoxy-7-phosphohept 32.5 2.8E+02 0.006 28.3 9.0 37 121-166 198-234 (352)
187 KOG0024 Sorbitol dehydrogenase 32.4 3E+02 0.0066 27.8 9.0 50 71-136 170-219 (354)
188 PHA02117 glutathionylspermidin 31.6 79 0.0017 32.7 5.1 44 133-184 309-352 (397)
189 TIGR02853 spore_dpaA dipicolin 31.2 92 0.002 30.6 5.4 28 71-98 151-178 (287)
190 cd02010 TPP_ALS Thiamine pyrop 31.0 3.9E+02 0.0084 23.9 9.4 93 72-183 68-170 (177)
191 PF03129 HGTP_anticodon: Antic 30.9 99 0.0021 24.2 4.6 42 81-136 16-57 (94)
192 KOG2364 Predicted pseudouridyl 30.7 1.8E+02 0.0039 29.6 7.1 74 198-272 203-283 (433)
193 TIGR01809 Shik-DH-AROM shikima 30.3 1.2E+02 0.0027 29.5 6.1 32 71-102 125-156 (282)
194 cd00860 ThrRS_anticodon ThrRS 30.2 1.3E+02 0.0028 23.1 5.2 42 81-136 15-56 (91)
195 KOG1250 Threonine/serine dehyd 30.2 1.8E+02 0.004 30.1 7.2 48 73-120 116-163 (457)
196 PRK12595 bifunctional 3-deoxy- 29.9 2.3E+02 0.0049 28.9 8.1 71 85-165 173-250 (360)
197 PRK00005 fmt methionyl-tRNA fo 29.8 2.2E+02 0.0048 28.2 7.9 59 73-135 2-60 (309)
198 PRK08306 dipicolinate synthase 29.8 1E+02 0.0022 30.4 5.4 29 71-99 152-180 (296)
199 COG0034 PurF Glutamine phospho 28.9 57 0.0012 34.1 3.5 78 24-104 299-385 (470)
200 TIGR01352 tonB_Cterm TonB fami 28.9 1.1E+02 0.0024 22.5 4.4 28 242-269 3-30 (74)
201 COG1598 Predicted nuclease of 28.2 46 0.001 25.5 2.1 22 367-388 25-46 (73)
202 COG1064 AdhP Zn-dependent alco 28.1 98 0.0021 31.3 4.9 50 70-119 166-216 (339)
203 PF03446 NAD_binding_2: NAD bi 28.0 2.2E+02 0.0047 25.1 6.8 31 71-101 1-31 (163)
204 PF03544 TonB_C: Gram-negative 26.9 87 0.0019 23.5 3.5 27 242-268 9-35 (79)
205 TIGR03793 TOMM_pelo TOMM prope 26.8 2.8E+02 0.0061 21.6 6.3 33 226-258 15-47 (77)
206 TIGR00460 fmt methionyl-tRNA f 26.7 2.7E+02 0.0059 27.6 7.9 59 73-135 2-60 (313)
207 PRK10676 DNA-binding transcrip 26.6 1.1E+02 0.0024 29.6 5.0 40 125-164 54-93 (263)
208 PF13241 NAD_binding_7: Putati 26.4 50 0.0011 26.9 2.1 36 67-103 3-38 (103)
209 PRK14689 hypothetical protein; 26.3 1E+02 0.0022 26.4 4.1 43 233-275 13-63 (124)
210 cd00738 HGTP_anticodon HGTP an 26.2 1.8E+02 0.0039 22.4 5.4 42 81-136 18-59 (94)
211 PRK06128 oxidoreductase; Provi 26.1 6E+02 0.013 24.5 13.0 32 71-102 55-87 (300)
212 cd08242 MDR_like Medium chain 25.8 1.6E+02 0.0034 28.6 6.0 29 72-100 157-185 (319)
213 PRK07523 gluconate 5-dehydroge 25.4 5.5E+02 0.012 23.8 10.7 30 71-100 10-40 (255)
214 cd00552 RaiA RaiA ("ribosome-a 25.3 2.9E+02 0.0063 21.5 6.5 63 226-291 11-76 (93)
215 PRK11761 cysM cysteine synthas 24.7 6E+02 0.013 24.8 9.9 54 72-139 64-117 (296)
216 PRK00258 aroE shikimate 5-dehy 24.6 2E+02 0.0042 28.0 6.4 32 71-102 123-154 (278)
217 KOG1447 GTP-specific succinyl- 24.4 6.8E+02 0.015 24.5 10.4 102 87-202 28-150 (412)
218 PRK10163 DNA-binding transcrip 24.3 6.3E+02 0.014 24.3 9.9 78 151-248 187-268 (271)
219 cd00861 ProRS_anticodon_short 24.3 1.3E+02 0.0027 23.5 4.1 42 81-136 18-59 (94)
220 PF01113 DapB_N: Dihydrodipico 24.3 2.6E+02 0.0056 23.5 6.3 33 73-105 2-36 (124)
221 TIGR01035 hemA glutamyl-tRNA r 24.2 2.6E+02 0.0056 29.1 7.5 32 71-102 180-211 (417)
222 cd02003 TPP_IolD Thiamine pyro 24.0 5.6E+02 0.012 23.4 9.1 37 72-108 68-106 (205)
223 COG0800 Eda 2-keto-3-deoxy-6-p 23.7 2.6E+02 0.0057 26.3 6.6 34 71-104 15-48 (211)
224 PF13380 CoA_binding_2: CoA bi 23.6 2.3E+02 0.005 23.6 5.7 52 70-135 55-106 (116)
225 PRK13811 orotate phosphoribosy 23.0 2E+02 0.0044 25.8 5.6 37 70-106 103-143 (170)
226 PRK14677 hypothetical protein; 22.5 2.3E+02 0.0049 23.5 5.4 40 234-273 6-53 (107)
227 PF01262 AlaDh_PNT_C: Alanine 22.4 1.3E+02 0.0029 26.7 4.4 32 71-102 20-51 (168)
228 COG0075 Serine-pyruvate aminot 22.2 4.4E+02 0.0096 27.2 8.5 34 70-103 79-112 (383)
229 PRK06935 2-deoxy-D-gluconate 3 22.1 6.4E+02 0.014 23.4 11.1 33 71-103 15-48 (258)
230 TIGR03309 matur_yqeB selenium- 21.9 1E+02 0.0022 29.9 3.5 28 74-101 1-28 (256)
231 COG1249 Lpd Pyruvate/2-oxoglut 21.7 1.9E+02 0.0041 30.5 5.9 40 63-102 165-204 (454)
232 TIGR02964 xanthine_xdhC xanthi 21.7 1.4E+02 0.0029 28.7 4.5 32 70-101 99-130 (246)
233 COG2433 Uncharacterized conser 21.7 2.1E+02 0.0046 31.1 6.1 85 71-155 80-207 (652)
234 PRK05479 ketol-acid reductoiso 21.4 3E+02 0.0065 27.7 7.0 29 72-100 18-46 (330)
235 cd03466 Nitrogenase_NifN_2 Nit 21.4 3.7E+02 0.008 28.0 8.0 35 71-105 300-334 (429)
236 PRK12549 shikimate 5-dehydroge 21.4 2.5E+02 0.0055 27.4 6.4 31 71-101 127-157 (284)
237 PRK05476 S-adenosyl-L-homocyst 21.3 1.6E+02 0.0035 30.8 5.2 31 70-100 211-241 (425)
238 PRK09496 trkA potassium transp 21.0 8.6E+02 0.019 25.0 10.8 29 73-101 2-30 (453)
239 PF09003 Phage_integ_N: Bacter 21.0 96 0.0021 24.1 2.6 25 362-386 33-57 (75)
240 PRK08017 oxidoreductase; Provi 20.8 6E+02 0.013 23.4 8.8 32 71-102 2-34 (256)
241 PRK15090 DNA-binding transcrip 20.7 7.1E+02 0.015 23.6 9.4 78 151-248 175-256 (257)
242 cd05191 NAD_bind_amino_acid_DH 20.6 2.2E+02 0.0048 22.0 4.8 31 71-101 23-53 (86)
243 PRK14673 hypothetical protein; 20.6 1.3E+02 0.0028 26.3 3.6 44 232-275 30-82 (137)
244 TIGR03569 NeuB_NnaB N-acetylne 20.4 3.1E+02 0.0067 27.6 6.8 72 81-165 76-157 (329)
245 cd00377 ICL_PEPM Members of th 20.4 3.8E+02 0.0083 25.5 7.3 48 81-142 160-207 (243)
246 PRK08226 short chain dehydroge 20.2 7E+02 0.015 23.1 10.8 30 72-101 7-37 (263)
247 COG2910 Putative NADH-flavin r 20.2 7.1E+02 0.015 23.2 9.5 66 72-142 2-73 (211)
248 cd05017 SIS_PGI_PMI_1 The memb 20.1 3.5E+02 0.0075 22.3 6.2 51 75-142 49-101 (119)
No 1
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=100.00 E-value=2.5e-98 Score=752.08 Aligned_cols=361 Identities=56% Similarity=0.940 Sum_probs=355.4
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH-----------------------------
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------------------------- 120 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------------------------- 120 (447)
||+|||||||||||+||+|+|+++||+++++|+..|.+++|+++||++|.+
T Consensus 1 mf~KiLIANRGEIAcRVIRtar~lGi~tVAVYSdaDa~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~Aa~~tGA~AIHP 80 (645)
T COG4770 1 MFSKILIANRGEIACRVIRTARDLGIRTVAVYSDADADALHVRMADEAVHIGPAPAAESYLDIDKIIDAARRTGAQAIHP 80 (645)
T ss_pred CcceEEEeccchhhHHHHHHHHHcCCceEEEEecCCCCchhhhhcchhhhcCCCchhhhhccHHHHHHHHHHhCcccccC
Confidence 689999999999999999999999999999999999999999999999998
Q ss_pred -------------------------------------------------------------HHHHHHhhhhCCcEEEEeC
Q 013241 121 -------------------------------------------------------------EEAVKLADELGFPVMIKAT 139 (447)
Q Consensus 121 -------------------------------------------------------------~e~~~~~~~ig~PvVvKP~ 139 (447)
+++..+++++||||+||+.
T Consensus 81 GYGFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlIKAs 160 (645)
T COG4770 81 GYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKAS 160 (645)
T ss_pred CccccccCHHHHHHHHHCCcEEECCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhcCCcEEEEec
Confidence 7788899999999999999
Q ss_pred CCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeE
Q 013241 140 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 219 (447)
Q Consensus 140 ~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~ 219 (447)
.|||||||+++++.+|+.++|+.++++++++||++.++||+|+..+|||++||++|++|+++++++||||+||+|||+++
T Consensus 161 aGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD~HGNvv~LgERdCSlQRRhQKVIE 240 (645)
T COG4770 161 AGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSLQRRHQKVIE 240 (645)
T ss_pred cCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCceEEEEEEecCCCCEEEeeccccchhhhcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCC
Q 013241 220 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 299 (447)
Q Consensus 220 ~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~ 299 (447)
++|+|.+++++++.|.+.++++++++||.|++||||++|.++.|||||||+|+|++||+||++||+||++||+++|.|++
T Consensus 241 EAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~~~~f~FlEMNTRLQVEHPVTE~iTGiDLVewqiRVA~Gek 320 (645)
T COG4770 241 EAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDADGNFYFLEMNTRLQVEHPVTELITGIDLVEWQIRVASGEK 320 (645)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcCCCcEEEEEeecceeccccchhhhhhhHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHH
Q 013241 300 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 379 (447)
Q Consensus 300 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~ 379 (447)
|++.|.+++.+|||||+|||||||.++|.|++|+++.+.+|.++++|+|+++..|+.|+++||||++|+|+||.||++|+
T Consensus 321 L~~~Q~di~l~GhAiE~RiyAEDp~r~FLPs~G~l~~~~~P~~~~vRvDsGV~~G~~Is~~YDpMiAKLi~~G~dR~eAl 400 (645)
T COG4770 321 LPFTQDDIPLNGHAIEARIYAEDPARGFLPSTGRLTRYRPPAGPGVRVDSGVREGDEISPFYDPMIAKLIVHGADREEAL 400 (645)
T ss_pred CCcccccccccceeEEEEEeccCcccCccCCCceeEeecCCCCCceecccCcccCCccccccchHHHHHhhcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccEEeccccCHHHHHHhcCCccccCCccccccccccchhccCC
Q 013241 380 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQAP 430 (447)
Q Consensus 380 ~~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~~~~~~~~ 430 (447)
+++.+||+++.|.|+.||++||++++.||+|+.|+.+|.||.++.+++.+|
T Consensus 401 ~rl~~AL~~~~v~Gi~tn~~Fl~al~~~~~F~~g~~~T~~i~r~~~~~~~~ 451 (645)
T COG4770 401 DRLRRALAEFEVEGIATNIPFLRALMADPRFRGGDLDTGFIAREIEDLFAP 451 (645)
T ss_pred HHHHHHHHhhEecCccccHHHHHHHhcCcccccCCCcceeeeecccccccC
Confidence 999999999999999999999999999999999999999999999887644
No 2
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-95 Score=721.15 Aligned_cols=362 Identities=57% Similarity=0.945 Sum_probs=353.5
Q ss_pred EEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH---------------------------------
Q 013241 74 ILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI--------------------------------- 120 (447)
Q Consensus 74 vLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i--------------------------------- 120 (447)
||||||||||+||+|+|++|||+|+++|+..|++++|+.+||+++++
T Consensus 1 iLiANRGEIAcRVirTakkmGI~tVAV~Sd~D~~SlHVk~ADeav~ig~a~~~~SYL~~~~I~~aa~~tgaqaihPGYGF 80 (670)
T KOG0238|consen 1 ILIANRGEIACRVIRTAKKMGIRTVAVYSDADRNSLHVKMADEAVCIGPAPAAQSYLRMDKIIDAAKRTGAQAIHPGYGF 80 (670)
T ss_pred CeeccccceeehhhhHHHHhCCeEEEEEccCccccceeecccceeecCCCchhhhhhhHHHHHHHHHhcCCceecCCccc
Confidence 69999999999999999999999999999999999999999999999
Q ss_pred ---------------------------------------------------------HHHHHHhhhhCCcEEEEeCCCCC
Q 013241 121 ---------------------------------------------------------EEAVKLADELGFPVMIKATAGGG 143 (447)
Q Consensus 121 ---------------------------------------------------------~e~~~~~~~ig~PvVvKP~~g~G 143 (447)
+++.+.++++|||+|||+..|||
T Consensus 81 LSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPvMiKa~~GGG 160 (670)
T KOG0238|consen 81 LSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPVMIKATAGGG 160 (670)
T ss_pred cccchHHHHHHHHcCCeEECCCHHHHHHhcchHHHHHHHHhcCCccccCcccccccHHHHHHHHHhcCCcEEEEeccCCC
Confidence 78888999999999999999999
Q ss_pred CcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCC
Q 013241 144 GRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPS 223 (447)
Q Consensus 144 g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~ 223 (447)
|+||+++.+++|+.+.++.+++++.++||++.+|+|+||+.+||++||+++|++|+.+++++||||+|||+||+++++|+
T Consensus 161 GkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD~hGnav~l~ERdCSvQRRnQKiiEEaPa 240 (670)
T KOG0238|consen 161 GKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLGERDCSVQRRNQKIIEEAPA 240 (670)
T ss_pred CcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCceEEEEEEecCCCcEEEecccccchhhhhhhhhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCCCCC
Q 013241 224 PALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYK 303 (447)
Q Consensus 224 ~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l~~~ 303 (447)
|.++++.+.+|.+.|+++++++||.|+++|||++|.+++|||||||+|+|++||+||++||+||++||||+|.|++++++
T Consensus 241 p~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~~~FyFmEmNTRLQVEHPvTEmItg~DLVewqiRvA~ge~lp~~ 320 (670)
T KOG0238|consen 241 PNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSKDNFYFMEMNTRLQVEHPVTEMITGTDLVEWQIRVAAGEPLPLK 320 (670)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCCCcEEEEEeeceeeecccchhhccchHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred ccccccceeEEEEEEeeCCCCccccCCCCceeEEecC-CCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHHHHH
Q 013241 304 QEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPA-GGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERM 382 (447)
Q Consensus 304 ~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~-~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~ 382 (447)
|++++.+||++|||||||||..+|+|++|++..+.+| .+|++|+|+++++|+.|+++||||++|+++||.||++|+.||
T Consensus 321 q~ei~l~GhafE~RiyAEdp~~~f~P~~G~L~~~~~p~~~~~vRvdtgV~~g~~vs~~YDpmiaKlvvwg~dR~~Al~kl 400 (670)
T KOG0238|consen 321 QEEIPLNGHAFEARIYAEDPYKGFLPSAGRLVYYSFPGHSPGVRVDTGVRSGDEVSIHYDPMIAKLVVWGKDREEALNKL 400 (670)
T ss_pred cceeeecceEEEEEEeecCCcccCCCCCccceeeccCCCCCCeeeecCcccCCcccccccchheeeeEecCCHHHHHHHH
Confidence 9999999999999999999999999999999999776 378999999999999999999999999999999999999999
Q ss_pred HHhhhccEEeccccCHHHHHHhcCCccccCCccccccccccchhccCCccccc
Q 013241 383 KRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQAPQKIVL 435 (447)
Q Consensus 383 ~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~~~~~~~~~~~~~ 435 (447)
.++|+++.|.|++||++||+.|+.+++|..|+++|.||++|..++.+|.....
T Consensus 401 ~~aL~~~~I~Gv~tnI~~l~~i~~~~~F~~g~V~T~fi~~~~~elf~~~~~~~ 453 (670)
T KOG0238|consen 401 KDALDNYVIRGVPTNIDFLRDIISHPEFAKGNVSTKFIPEHQPELFAPESITP 453 (670)
T ss_pred HHHHhhcEEecCccchHHHHHHhcChhhhcCccccccchhcCccccCccccCc
Confidence 99999999999999999999999999999999999999999999987755444
No 3
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=2.6e-85 Score=674.07 Aligned_cols=362 Identities=53% Similarity=0.855 Sum_probs=351.3
Q ss_pred cCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH----------------------------
Q 013241 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI---------------------------- 120 (447)
Q Consensus 69 ~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i---------------------------- 120 (447)
..|+|||||||||||+|+.|+|.++|+.|+++|+.+|+.++|...||++|.+
T Consensus 5 ~~~~KvLVANRgEIAIRvFRAa~ELgi~TVAIys~ED~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII~iAk~~gaDaI 84 (1149)
T COG1038 5 EKIKKVLVANRGEIAIRVFRAANELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLSIDEIIRIAKRSGADAI 84 (1149)
T ss_pred hhhheeeeeccchhhHHHHHHHHhcCceEEEEeeccccchhhhccccceeeecCCCCchHHhccHHHHHHHHHHcCCCee
Confidence 3589999999999999999999999999999999999999999999999988
Q ss_pred ---------------------------------------------------------------HHHHHHhhhhCCcEEEE
Q 013241 121 ---------------------------------------------------------------EEAVKLADELGFPVMIK 137 (447)
Q Consensus 121 ---------------------------------------------------------------~e~~~~~~~ig~PvVvK 137 (447)
+++.+++++.|||+|||
T Consensus 85 hPGYGfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~gyPvmiK 164 (1149)
T COG1038 85 HPGYGFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMIK 164 (1149)
T ss_pred cCCcccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEE
Confidence 89999999999999999
Q ss_pred eCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeecccccccee
Q 013241 138 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKL 217 (447)
Q Consensus 138 P~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~ 217 (447)
++.||||+||++|+++++|.+.++++.++++++||++.++||+||++++|++||+++|.+|+++|+++||||+||||||+
T Consensus 165 A~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQiLgD~~GnvvHLfERDCSvQRRhQKV 244 (1149)
T COG1038 165 AAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSVQRRHQKV 244 (1149)
T ss_pred EccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcceeEEEEeecCCCCEEEEeecccchhhcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcC
Q 013241 218 LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMG 297 (447)
Q Consensus 218 ~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G 297 (447)
++.+|++.++++++++|++.+.++++.+||.|++++||++|.+|++||||||||+|++|++||++||+|+++.|+.++.|
T Consensus 245 VE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyFIEvNPRiQVEHTiTE~vTgiDIV~aQi~ia~G 324 (1149)
T COG1038 245 VEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPRIQVEHTITEEITGIDIVKAQIHIAAG 324 (1149)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcCCCcEEEEEecCceeeEEeeeeeeechhHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC------CCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEe-eeecCCcccCCCCCccceEEEE
Q 013241 298 GKLR------YKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMD-SHVYPDYVVPPSYDSLLGKLIV 370 (447)
Q Consensus 298 ~~l~------~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d-~~~~~G~~v~~~~ds~lg~vi~ 370 (447)
..+. ..+++|..+|+||+|||+.|||.++|.|..|+|+.|+.++|.|||.| ..-+.|..|+|+|||++-|+.+
T Consensus 325 ~~l~~~e~glp~q~dI~~~G~AiQcRITTEDP~n~F~PDtGrI~aYRs~gGfGVRLD~Gn~~~GavItpyyDslLVK~t~ 404 (1149)
T COG1038 325 ATLHTPELGLPQQKDIRTHGYAIQCRITTEDPENGFIPDTGRITAYRSAGGFGVRLDGGNAYAGAVITPYYDSLLVKVTC 404 (1149)
T ss_pred CccCCcccCCCccccccccceEEEEEeeccCcccCCCCCCceEEEEecCCCceEEecCCcccccceeccccccceeeEee
Confidence 9886 23567999999999999999999999999999999999999999999 5578999999999999999999
Q ss_pred EcCCHHHHHHHHHHhhhccEEeccccCHHHHHHhcCCccccCCccccccccccchhccCC
Q 013241 371 WAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQAP 430 (447)
Q Consensus 371 ~g~~~~eA~~~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~~~~~~~~ 430 (447)
||.++++|++||.|+|.|++|+||+||++||.+++.||+|.+|+|+|+||++..+.+..|
T Consensus 405 ~~~t~e~a~~km~RaL~EfrIrGVkTNi~FL~~vl~h~~F~~g~y~T~FId~tPeLf~~~ 464 (1149)
T COG1038 405 WGSTFEEAIRKMIRALREFRIRGVKTNIPFLEAVLNHPDFRSGRYTTSFIDTTPELFQFP 464 (1149)
T ss_pred cCCCHHHHHHHHHHHHHHheecceecCcHHHHHHhcCcccccCcceeeeccCCHHHhccc
Confidence 999999999999999999999999999999999999999999999999999998877644
No 4
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=100.00 E-value=9.5e-80 Score=626.50 Aligned_cols=357 Identities=60% Similarity=0.996 Sum_probs=349.8
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH-----------------------------
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------------------------- 120 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------------------------- 120 (447)
|++||||+||||+|+|++|+|+++|+.++++++..|+.++|..++|+.+++
T Consensus 1 m~~kiLIanrGeia~ri~ra~~~lGi~tvav~s~~d~~~~~~~~adeav~i~~~~~~~syl~i~~ii~~a~~~gadai~p 80 (449)
T COG0439 1 MFKKILIANRGEIAVRIIRACRELGIETVAVYSEADADALHVALADEAVCIGPAPSADSYLNIDAIIAAAEETGADAIHP 80 (449)
T ss_pred CCceEEEecCchhHHHHHHHHHHhCCeEEEEeccccccchhhhhCceEEEcCCccchhhhhhHHHHHHHHHhcCCceEcc
Confidence 589999999999999999999999999999999999999999999999988
Q ss_pred -------------------------------------------------------------HHHHHHhhhhCCcEEEEeC
Q 013241 121 -------------------------------------------------------------EEAVKLADELGFPVMIKAT 139 (447)
Q Consensus 121 -------------------------------------------------------------~e~~~~~~~ig~PvVvKP~ 139 (447)
+++.+.++++||||||||.
T Consensus 81 Gygflsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iGyPVivKa~ 160 (449)
T COG0439 81 GYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKAA 160 (449)
T ss_pred cchhhhCCHHHHHHHHHcCCeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCCCCcCCHHHHHHHHHHcCCCEEEEEC
Confidence 6889999999999999999
Q ss_pred CCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeE
Q 013241 140 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 219 (447)
Q Consensus 140 ~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~ 219 (447)
.|+||+||++|++.+||.+++..+++++...|+++.+++||||++++|+++|+++|++|+++++++|+|++|+++||+++
T Consensus 161 ~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD~~g~~i~l~eRdcsiqrr~qkvie 240 (449)
T COG0439 161 AGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCSIQRRHQKVIE 240 (449)
T ss_pred CCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCceEEEEEEEcCcccEEEEEeccCCCcCCccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCC
Q 013241 220 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 299 (447)
Q Consensus 220 ~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~ 299 (447)
++|++.++++.+.++.+.+.++++.+||.|++|+||++|.+|+|||||||||+||+|+++|++||+|++++|+++++|++
T Consensus 241 eapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~~~~~yfiEmN~Rlqveh~vte~vtGiDlv~~qi~ia~ge~ 320 (449)
T COG0439 241 EAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDSNGEFYFIEMNTRLQVEHPVTEMVTGIDLVKEQIRIAAGEP 320 (449)
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCEEEEEEecccccCccceehhhhhhHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999977789999999999999999999999999999999999999
Q ss_pred CCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHH
Q 013241 300 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 379 (447)
Q Consensus 300 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~ 379 (447)
++++++++..+||+++||||+|||..+|.|++|.++.+.+|++++||+|++.+.|++++++||||+||+|++|.+|++|+
T Consensus 321 l~~~q~~~~~~g~aie~Ri~aedp~~~f~pspG~i~~~~~P~g~gvr~d~~~~~~~~i~~~yds~i~k~i~~~~~r~~ai 400 (449)
T COG0439 321 LSLKQEDIKFRGHAIECRINAEDPLGNFLPSPGKITRYAPPGGPGVRVDSGVYDGYRVPPYYDSMIGKVIVHGRTRDEAI 400 (449)
T ss_pred CCCCCCcccccceeeeceeeccCCCCCcCCCCCeeeeecCCCCCceEEEeecccCcccCcchhhheeEEEEecCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccEEeccccCHHHHHHhcCCccccCCccccccccccchh
Q 013241 380 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQE 426 (447)
Q Consensus 380 ~~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~~~~ 426 (447)
.++.++|.++.|+|++||++|++.++.+++|.+|+++|.|+++++..
T Consensus 401 ~~~~~aL~e~~i~G~~t~~~~~~~~~~~~~~~~g~~~t~~l~~~~~~ 447 (449)
T COG0439 401 ARMRRALDELVIDGIKTNIPLLQEILRDPDFLAGDLDTHFLETHLEP 447 (449)
T ss_pred HHHHHHHHheEecCccCChHHHHHHhcChHhhcCCcchhhhhhcccc
Confidence 99999999999999999999999999999999999999999997653
No 5
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=3.1e-76 Score=618.37 Aligned_cols=353 Identities=57% Similarity=0.974 Sum_probs=339.3
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH-----------------------------
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------------------------- 120 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------------------------- 120 (447)
||+||||+||||+|++++++|+++|+.++++++..|..+++.+++|+.+.+
T Consensus 1 ~~~kvLIan~Geia~~iiraar~lGi~~V~v~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~p 80 (499)
T PRK08654 1 MFKKILIANRGEIAIRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSYLNIERIIDVAKKAGADAIHP 80 (499)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEEEEeccccccccchhhCCEEEEcCCCCcccCccCHHHHHHHHHHhCCCEEEE
Confidence 589999999999999999999999999999999999999999999876642
Q ss_pred -------------------------------------------------------------HHHHHHhhhhCCcEEEEeC
Q 013241 121 -------------------------------------------------------------EEAVKLADELGFPVMIKAT 139 (447)
Q Consensus 121 -------------------------------------------------------------~e~~~~~~~ig~PvVvKP~ 139 (447)
+++.++++++|||+||||+
T Consensus 81 g~gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~~e~~~~a~~igyPvvIKp~ 160 (499)
T PRK08654 81 GYGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEIGYPVIIKAS 160 (499)
T ss_pred CCCccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCCHHHHHHHHHHhCCCEEEEeC
Confidence 6677888899999999999
Q ss_pred CCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeE
Q 013241 140 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 219 (447)
Q Consensus 140 ~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~ 219 (447)
.|+||+||++|++.+||.++++.+..++.+.|+++.+++|+||++++|+++++++|++|+++++++|+|++|+++|++++
T Consensus 161 ~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ieVqvl~d~~G~vv~l~~recsiqrr~qk~ie 240 (499)
T PRK08654 161 AGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQILADKHGNVIHLGDRECSIQRRHQKLIE 240 (499)
T ss_pred CCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcEEEEEEEEcCCCCEEEEeeeccccccCccceEE
Confidence 99999999999999999999999988888889888999999999989999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCC
Q 013241 220 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 299 (447)
Q Consensus 220 ~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~ 299 (447)
++|++.++++++++|.+.+.++++++||.|+++|||+++ +|++||+|||||+|++|+++|+++|+|++++++++++|++
T Consensus 241 ~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~-~g~~yflEiNpRlqveh~vte~~tGvDlv~~~i~~A~G~~ 319 (499)
T PRK08654 241 EAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYS-NGNFYFLEMNTRLQVEHPITEMVTGIDIVKEQIKIAAGEE 319 (499)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEE-CCcEEEEEEECCCCCCCceeehhhCCCHHHHHHHHhcCCC
Confidence 999988999999999999999999999999999999997 4679999999999999999999999999999999999999
Q ss_pred CCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHH
Q 013241 300 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 379 (447)
Q Consensus 300 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~ 379 (447)
+++.+.++..+||+|+||||||||..+|.|++|+|+.+..|+++|+|+|++++.|+.++++|||++||||+||+||++|+
T Consensus 320 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~P~~G~i~~~~~p~~~~vr~d~~~~~g~~v~~~~ds~~ak~i~~g~~r~~a~ 399 (499)
T PRK08654 320 LSFKQEDITIRGHAIECRINAEDPLNDFAPSPGKIKRYRSPGGPGVRVDSGVHMGYEIPPYYDSMISKLIVWGRTREEAI 399 (499)
T ss_pred CCCcccccccceEEEEEEEEeecCccCcCCCCCeEEEEEcCCCCCEEEECcccCCCCcCCccCchhheeeEeCCCHHHHH
Confidence 99888888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccEEeccccCHHHHHHhcCCccccCCcccccccccc
Q 013241 380 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKH 423 (447)
Q Consensus 380 ~~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~ 423 (447)
+++.+||+++.|+|++||++||++||.+|+|++|+++|+||+++
T Consensus 400 ~~~~~al~~~~i~g~~t~~~~~~~~~~~~~f~~~~~~t~~~~~~ 443 (499)
T PRK08654 400 ARMRRALYEYVIVGVKTNIPFHKAVMENENFVRGNLHTHFIEEE 443 (499)
T ss_pred HHHHHHHhhcEEECccCCHHHHHHHhCCHhhcCCCccchhhhcC
Confidence 99999999999999999999999999999999999999999998
No 6
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=3.1e-77 Score=603.77 Aligned_cols=369 Identities=47% Similarity=0.744 Sum_probs=353.1
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH------------------------------
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI------------------------------ 120 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i------------------------------ 120 (447)
.+|||||||||||+||.|+|.++|+.++++|+..|+.+||...||+++.+
T Consensus 33 ~~kvlVANRgEIaIRvFRa~tEL~~~tvAiYseqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~iak~~~vdavHP 112 (1176)
T KOG0369|consen 33 KNKVLVANRGEIAIRVFRAATELSMRTVAIYSEQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISIAKKHNVDAVHP 112 (1176)
T ss_pred hceeEEecCCcchhHHHHHHhhhcceEEEEEeccchhhhhhhccccceecccCCCchhhhhhHHHHHHHHHHcCCCeecC
Confidence 37999999999999999999999999999999999999999999999988
Q ss_pred -------------------------------------------------------------HHHHHHhhhhCCcEEEEeC
Q 013241 121 -------------------------------------------------------------EEAVKLADELGFPVMIKAT 139 (447)
Q Consensus 121 -------------------------------------------------------------~e~~~~~~~ig~PvVvKP~ 139 (447)
+|+.+++++.|+|+|+|+.
T Consensus 113 GYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~yG~PvI~KAA 192 (1176)
T KOG0369|consen 113 GYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYGLPVIIKAA 192 (1176)
T ss_pred CccccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEeec
Confidence 9999999999999999999
Q ss_pred CCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeE
Q 013241 140 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 219 (447)
Q Consensus 140 ~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~ 219 (447)
.||||+||++|++.+|++++|+++.+++.++||++.++||+|++.++|++||+++|++|+++|+++||||+||+|||+.+
T Consensus 193 yGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllgD~~GNvvHLyERDCSvQRRHQKVVE 272 (1176)
T KOG0369|consen 193 YGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLGDKHGNVVHLYERDCSVQRRHQKVVE 272 (1176)
T ss_pred ccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcceeEEEEecccCCCEEEEeecccchhhhhcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCC
Q 013241 220 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 299 (447)
Q Consensus 220 ~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~ 299 (447)
.+|++.++++++++|.+.+.++++.+||..++++||++|..|++||||+|+|+|++|++||.+||+|++..||++|.|..
T Consensus 273 iAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~~g~hYFIEvN~RlQVEHTvTEEITgvDlV~aQi~vAeG~t 352 (1176)
T KOG0369|consen 273 IAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQKGRHYFIEVNPRLQVEHTVTEEITGVDLVQAQIHVAEGAS 352 (1176)
T ss_pred ecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEccCCCEEEEEecCceeeeeeeeeeeccchhhhhhhhhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC---CCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeee-ecCCcccCCCCCccceEEEEEcCCH
Q 013241 300 LR---YKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSH-VYPDYVVPPSYDSLLGKLIVWAPTR 375 (447)
Q Consensus 300 l~---~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~-~~~G~~v~~~~ds~lg~vi~~g~~~ 375 (447)
++ +.|+.+..+|.+|+||++.|||.++|.|..|+|+.++.-.|.|+|.|.. .+.|..|+|+|||++-|+|++|.|.
T Consensus 353 Lp~lgl~QdkI~trG~aIQCRvTTEDPa~~FqPdtGriEVfRSgeGmGiRLD~asafaGavIsPhYDSllVK~i~h~~~~ 432 (1176)
T KOG0369|consen 353 LPDLGLTQDKITTRGFAIQCRVTTEDPAKGFQPDTGRIEVFRSGEGMGIRLDGASAFAGAVISPHYDSLLVKVICHGSTY 432 (1176)
T ss_pred cccccccccceeecceEEEEEEeccCccccCCCCCceEEEEEeCCCceEeecCccccccccccccccceEEEEEecCCcc
Confidence 85 5678889999999999999999999999999999999888999999854 6899999999999999999999999
Q ss_pred HHHHHHHHHhhhccEEeccccCHHHHHHhcCCccccCCccccccccccchhcc-CCccccccccc
Q 013241 376 EKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQ-APQKIVLATTP 439 (447)
Q Consensus 376 ~eA~~~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~~~~~~-~~~~~~~~~~~ 439 (447)
+.+.++|.|+|.+++|+||+||+|||..+|.++.|..|.++|.||+++.+.+. .|..--.+|+-
T Consensus 433 ~~~a~KMiRaL~eFRiRGVKTNIpFllnvL~n~~Fl~g~~~T~FIDe~PeLFq~~psqNRAQKLL 497 (1176)
T KOG0369|consen 433 EIAARKMIRALIEFRIRGVKTNIPFLLNVLTNPVFLEGTVDTTFIDETPELFQLKPSQNRAQKLL 497 (1176)
T ss_pred HHHHHHHHHHHHHHhhcceecCcHHHHHHhcCcceeeeeeeeEEecCChHHhccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999987765 44333444433
No 7
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=100.00 E-value=1.4e-72 Score=631.19 Aligned_cols=355 Identities=51% Similarity=0.824 Sum_probs=339.2
Q ss_pred EEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH--------------------------------
Q 013241 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI-------------------------------- 120 (447)
Q Consensus 73 kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i-------------------------------- 120 (447)
|||||||||||+||+|+|+++|+.++++++..|..++|..++|+.+.+
T Consensus 1 ~~lianrgeia~ri~ra~~elGi~tVav~s~~D~~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~iak~~~iDaI~P 80 (1143)
T TIGR01235 1 KILVANRGEIAIRVFRAANELGIRTVAIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRVAKLNGVDAIHP 80 (1143)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEECcccccCcchhhcCEEEEcCCccccCcccccCCHHHHHHHHHHhCCCEEEE
Confidence 799999999999999999999999999999999999998888876531
Q ss_pred -------------------------------------------------------------HHHHHHhhhhCCcEEEEeC
Q 013241 121 -------------------------------------------------------------EEAVKLADELGFPVMIKAT 139 (447)
Q Consensus 121 -------------------------------------------------------------~e~~~~~~~ig~PvVvKP~ 139 (447)
+++.++++++|||+||||+
T Consensus 81 GyGflsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~~eea~~~ae~iGyPvIVKP~ 160 (1143)
T TIGR01235 81 GYGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPETMEEVLDFAAAIGYPVIIKAS 160 (1143)
T ss_pred CCCccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHHcCCCEEEEEC
Confidence 5677788899999999999
Q ss_pred CCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeE
Q 013241 140 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 219 (447)
Q Consensus 140 ~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~ 219 (447)
.|+||+||++|++.+||.++++.+.+++.+.|+++.++|||||++++|+++++++|++|+++++++|+|+++++++++.+
T Consensus 161 ~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~reIeVqVlgD~~G~vv~l~eRdcsvqrr~qk~ie 240 (1143)
T TIGR01235 161 WGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGDKHGNVVHLFERDCSVQRRHQKVVE 240 (1143)
T ss_pred CCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeEEEEEEEEeCCCCEEEEEeccccccccCceEEE
Confidence 99999999999999999999999999988889989999999999989999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCC
Q 013241 220 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 299 (447)
Q Consensus 220 ~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~ 299 (447)
.+|++.++++++++|.+.+.++++++||.|+++|||++|++|++||||||||+|++|+++|+++|+|+++++++++.|.+
T Consensus 241 ~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~dg~~yfIEVNPRiqveh~vTe~vtGiDlv~~qi~iA~G~~ 320 (1143)
T TIGR01235 241 VAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDNDGKFYFIEVNPRIQVEHTVTEEITGIDIVQAQIHIADGAS 320 (1143)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeCCCcEEEEEeecCCCcchhHHHHHhCcHHHHHHHHHHcCCC
Confidence 99998899999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred CC------CCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeee-ecCCcccCCCCCccceEEEEEc
Q 013241 300 LR------YKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSH-VYPDYVVPPSYDSLLGKLIVWA 372 (447)
Q Consensus 300 l~------~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~-~~~G~~v~~~~ds~lg~vi~~g 372 (447)
++ ..|+++..+||||+|||++|||..+|.|++|+|+.+..|+|+|||+|++ .+.|+.|+|+||||++|+|+||
T Consensus 321 L~~~~~~~~~q~~~~~~g~ai~~ri~~edp~~~f~p~~g~i~~~~~~~g~gvr~d~~~~~~g~~v~~~yds~~~k~~~~~ 400 (1143)
T TIGR01235 321 LPTPQLGVPNQEDIRTNGYAIQCRVTTEDPANNFQPDTGRIEAYRSAGGFGIRLDGGNSYAGAIITPYYDSLLVKVSAWA 400 (1143)
T ss_pred CCccccCCCcccccCCCcEEEEEEEeeecCCCCcccCCcEeeEEecCCCCCeEecccccCCCCCcCCcccchhhhheeeC
Confidence 98 5677888999999999999999999999999999999999999999998 6899999999999999999999
Q ss_pred CCHHHHHHHHHHhhhccEEeccccCHHHHHHhcCCccccCCccccccccccchhc
Q 013241 373 PTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQEL 427 (447)
Q Consensus 373 ~~~~eA~~~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~~~~~ 427 (447)
+||++|++||.+||++++|+|++||++||+++|.||+|++|+++|+||+++.+.+
T Consensus 401 ~~~~~a~~~~~~al~e~~i~gv~tn~~~l~~~l~~~~f~~~~~~t~~~~~~~~l~ 455 (1143)
T TIGR01235 401 STPEEAAAKMDRALREFRIRGVKTNIPFLENVLGHPKFLDGSYDTRFIDTTPELF 455 (1143)
T ss_pred CCHHHHHHHHHHHHhhcEEECccCCHHHHHHHhcCHhhcCCCccchhhhcChhhc
Confidence 9999999999999999999999999999999999999999999999999995444
No 8
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=100.00 E-value=8.6e-72 Score=584.34 Aligned_cols=361 Identities=53% Similarity=0.879 Sum_probs=341.2
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH-----------------------------
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------------------------- 120 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------------------------- 120 (447)
||+||||+||||+|++++++|+++|+.++++++..|..+++..++|+.+.+
T Consensus 1 ~~kkiLi~~~ge~a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~AD~~~~i~~~~~~~y~d~~~i~~~a~~~~iDaI~pg 80 (478)
T PRK08463 1 MIHKILIANRGEIAVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTDPIKGYLDVKRIVEIAKACGADAIHPG 80 (478)
T ss_pred CccEEEEECCCHHHHHHHHHHHHcCCeEEEEECCCccCCcchhhcCEEEEcCCCchhcccCHHHHHHHHHHhCCCEEEEC
Confidence 589999999999999999999999999999999988888888888875422
Q ss_pred -------------------------------------------------------------HHHHHHhhhhCCcEEEEeC
Q 013241 121 -------------------------------------------------------------EEAVKLADELGFPVMIKAT 139 (447)
Q Consensus 121 -------------------------------------------------------------~e~~~~~~~ig~PvVvKP~ 139 (447)
+++.++++++|||+|+||+
T Consensus 81 ~g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~~~~~~~~~~~igyPvvvKP~ 160 (478)
T PRK08463 81 YGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVILKAS 160 (478)
T ss_pred CCccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHhCCCEEEEeC
Confidence 4556677889999999999
Q ss_pred CCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeE
Q 013241 140 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 219 (447)
Q Consensus 140 ~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~ 219 (447)
.|+||+|+++|++.+||.++++.+..++...|+++.++||+||+|++|+++++++|++|+++++++|+|+.+++++++++
T Consensus 161 ~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~~iev~v~~d~~g~v~~~~er~~s~~~~~~~~ie 240 (478)
T PRK08463 161 GGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQKVIE 240 (478)
T ss_pred CCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCeEEEEEEEEcCCCCEEEEeccCCccccccCceEE
Confidence 99999999999999999999998887777778889999999999889999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCC
Q 013241 220 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 299 (447)
Q Consensus 220 ~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~ 299 (447)
.+|++.++++++++|.+.+.++++++||.|++|+||++|++|++||+|||||+|++|+++|.++|+|++++++++++|++
T Consensus 241 ~~P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~~~~~y~iEiN~R~~~~~~~te~~tGidlv~~~ir~a~G~~ 320 (478)
T PRK08463 241 IAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNRFYFMEMNTRIQVEHGVTEEITGIDLIVRQIRIAAGEI 320 (478)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEEECCcCCCcceeeHhhCCCHHHHHHHHHcCCC
Confidence 99998899999999999999999999999999999999987889999999999999999999999999999999999999
Q ss_pred CCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHH
Q 013241 300 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 379 (447)
Q Consensus 300 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~ 379 (447)
+++.+.++..+||++++||+||||...|.|++|+|+.+.+|.++++|+|++++.|+.++++|||++|++|++|+|+++|+
T Consensus 321 l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~~~~~~~~~~~~vr~d~~~~~g~~v~~~~d~~la~~i~~g~~r~~a~ 400 (478)
T PRK08463 321 LDLEQSDIKPRGFAIEARITAENVWKNFIPSPGKITEYYPALGPSVRVDSHIYKDYTIPPYYDSMLAKLIVKATSYDLAV 400 (478)
T ss_pred CCCccccCCCceEEEEEEEeccCcccCeecCCcEEEEEEcCCCCCeeEeccccCCCEeCcccccceeEEEEECCCHHHHH
Confidence 98877777788999999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred HHHHHhhhccEEeccccCHHHHHHhcCCccccCCccccccccccchhccCC
Q 013241 380 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQAP 430 (447)
Q Consensus 380 ~~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~~~~~~~~ 430 (447)
+++.++|+++.|+|++||++||++||.+++|++|+++|+||+++++++..+
T Consensus 401 ~~~~~al~~~~i~g~~t~~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~ 451 (478)
T PRK08463 401 NKLERALKEFVIDGIRTTIPFLIAITKTREFRRGYFDTSYIETHMQELLEK 451 (478)
T ss_pred HHHHHHHhhcEEeCccCCHHHHHHHhCCHHHhCCCccchhhhhCchhhccc
Confidence 999999999999999999999999999999999999999999999888643
No 9
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=2.5e-71 Score=580.28 Aligned_cols=357 Identities=55% Similarity=0.886 Sum_probs=339.7
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH-----------------------------
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------------------------- 120 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------------------------- 120 (447)
|++||||+||||+|++++++|+++|+.++++++..|..+++.+++|+.+.+
T Consensus 1 ~~~kvLi~~~geia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg 80 (472)
T PRK07178 1 MIKKILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPG 80 (472)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeC
Confidence 589999999999999999999999999999999999999999888886432
Q ss_pred ------------------------------------------------------------HHHHHHhhhhCCcEEEEeCC
Q 013241 121 ------------------------------------------------------------EEAVKLADELGFPVMIKATA 140 (447)
Q Consensus 121 ------------------------------------------------------------~e~~~~~~~ig~PvVvKP~~ 140 (447)
+++.++++++|||+||||+.
T Consensus 81 ~g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~igyPvvvKp~~ 160 (472)
T PRK07178 81 YGFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAERIGYPVMLKATS 160 (472)
T ss_pred CCCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 56677788999999999999
Q ss_pred CCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEe
Q 013241 141 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE 220 (447)
Q Consensus 141 g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~ 220 (447)
|+||+||++|++++||.++++.+..++.+.|++..+++|+||++++|+++++++|++|+++++++++|++++++++.++.
T Consensus 161 ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~~eiev~v~~d~~G~~v~~~er~~s~~~~~~~~~e~ 240 (472)
T PRK07178 161 GGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILADSHGNVVHLFERDCSIQRRNQKLIEI 240 (472)
T ss_pred CCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCeEEEEEEEEECCCCEEEEEccccceEecCcceEEE
Confidence 99999999999999999999999888877888889999999999899999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCC
Q 013241 221 APSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKL 300 (447)
Q Consensus 221 ~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l 300 (447)
+|++.++++++++|.+.+.++++++||.|++++||++|++|++||+|||||+|++|++++.++|+|++++++++++|+++
T Consensus 241 ~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~g~~y~iEiNpRl~~~~~~te~~tGvdl~~~~ir~a~G~~l 320 (472)
T PRK07178 241 APSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDADGEVYFMEMNTRVQVEHTITEEITGIDIVREQIRIASGLPL 320 (472)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeCCCCEEEEEEeCCcCCCccceeeeeCcCHHHHHHHHHCCCCC
Confidence 99988999999999999999999999999999999999778899999999999999999999999999999999999999
Q ss_pred CCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHHH
Q 013241 301 RYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIE 380 (447)
Q Consensus 301 ~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~ 380 (447)
+..+.++..+||++++||++|||..+|.|++|+|+.+..|++++||+|+++++|+.|+++|||++||||+||+||++|++
T Consensus 321 ~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~g~~v~~~~d~~~~~vi~~g~~~~~a~~ 400 (472)
T PRK07178 321 SYKQEDIQHRGFALQFRINAEDPKNDFLPSFGKITRYYAPGGPGVRTDTAIYTGYTIPPYYDSMCAKLIVWALTWEEALD 400 (472)
T ss_pred CCccccCCcceEEEEEEEeeecCCcCEecCceEEEEEEcCCCCCeEEEecccCCCEeCcccCCccceEEEEcCCHHHHHH
Confidence 98877788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccEEeccccCHHHHHHhcCCccccCCccccccccccchhc
Q 013241 381 RMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQEL 427 (447)
Q Consensus 381 ~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~~~~~ 427 (447)
++.++|++++|+|++||++||++||.||+|++|+++|+||+++ .++
T Consensus 401 ~~~~al~~~~i~g~~t~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~ 446 (472)
T PRK07178 401 RGRRALDDMRVQGVKTTIPYYQEILRNPEFRSGQFNTSFVESH-PEL 446 (472)
T ss_pred HHHHHHhhcEEeCccCCHHHHHHHhcCHhhcCCCccchhHhcC-hhh
Confidence 9999999999999999999999999999999999999999998 444
No 10
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=100.00 E-value=2.3e-70 Score=572.30 Aligned_cols=363 Identities=52% Similarity=0.859 Sum_probs=341.6
Q ss_pred cCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH----------------------------
Q 013241 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI---------------------------- 120 (447)
Q Consensus 69 ~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i---------------------------- 120 (447)
++|+||||+||||+|++++++|+++|+.++++++..|.++++.+++|+.+.+
T Consensus 3 ~~~~~vLi~~~geia~~ii~aa~~lG~~~v~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~~~a~~~~~daI~ 82 (467)
T PRK12833 3 SRIRKVLVANRGEIAVRIIRAARELGMRTVAACSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIH 82 (467)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCCChhHHhCCEEEecCCCCccccccCHHHHHHHHHHhCCCEEE
Confidence 4689999999999999999999999999999999888888999899876521
Q ss_pred --------------------------------------------------------------HHHHHHhhhhCCcEEEEe
Q 013241 121 --------------------------------------------------------------EEAVKLADELGFPVMIKA 138 (447)
Q Consensus 121 --------------------------------------------------------------~e~~~~~~~ig~PvVvKP 138 (447)
+++.++++++|||+||||
T Consensus 83 pg~g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~~~e~~~~~~~igyPvvvKp 162 (467)
T PRK12833 83 PGYGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVASLDAALEVAARIGYPLMIKA 162 (467)
T ss_pred ECCCccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEE
Confidence 566777889999999999
Q ss_pred CCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceee
Q 013241 139 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL 218 (447)
Q Consensus 139 ~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~ 218 (447)
..|+||+|+++|++.+||.++++.+.+++...|+++.++||+||++++|+++++++|++ +++++++++|+++++++++.
T Consensus 163 ~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~~ei~v~v~~dg~-~~~~~~~~~~~~~r~~~ki~ 241 (467)
T PRK12833 163 AAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILGDGE-RVVHLFERECSLQRRRQKIL 241 (467)
T ss_pred CCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEeCCC-cEEEEEEeecccccCCccEE
Confidence 99999999999999999999999988888778888899999999977999999999876 68899999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEe-cCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcC
Q 013241 219 EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMG 297 (447)
Q Consensus 219 ~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d-~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G 297 (447)
+++|++.++++.+++|.+.+.++++++||+|++++||+++ ++|++||||||||++++|++++.++|+|++++++++++|
T Consensus 242 e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~~~iEvNpR~~~~~~~te~~tGvdl~~~~i~~a~G 321 (467)
T PRK12833 242 EEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFYFIEMNTRIQVEHPVTEAITGIDLVQEMLRIADG 321 (467)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCEEEEEEECCCCcchhhhHHHhCCCHHHHHHHHHCC
Confidence 9999888999999999999999999999999999999998 568899999999999999999999999999999999999
Q ss_pred CCCCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHH
Q 013241 298 GKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREK 377 (447)
Q Consensus 298 ~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~e 377 (447)
+++++.+.++..+||++++|+++|||..+|.|++|+++.+.+|.+||+|+|++++.|+.|+++|||++|+||++|+|+++
T Consensus 322 ~~l~~~~~~~~~~g~ai~~ri~ae~~~~~~~p~~g~i~~~~~~~~~gvr~d~~~~~G~~v~~~~ds~l~~vi~~g~~~~~ 401 (467)
T PRK12833 322 EPLRFAQGDIALRGAALECRINAEDPLRDFFPNPGRIDALVWPQGPGVRVDSLLYPGYRVPPFYDSLLAKLIVHGEDRAA 401 (467)
T ss_pred CCCCCCccccCcceEEEEEEEecccCCCCcccCCCEEEEEEcCCCCCeEEecceeCcCEeCCCcCcchheEEEEcCCHHH
Confidence 99998877788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccEEeccccCHHHHHHhcCCccccCCccccccccccchhccCCcc
Q 013241 378 AIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQAPQK 432 (447)
Q Consensus 378 A~~~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~~~~~~~~~~ 432 (447)
|++++.++|++++|+|++||++||++||.+|+|++|+++|+||+++++++.+..+
T Consensus 402 a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 456 (467)
T PRK12833 402 ALARAARALRELRIDGMKTTAPLHRALLADADVRAGRFHTNFLEAWLAEWRAALD 456 (467)
T ss_pred HHHHHHHHHHhcEeECccCCHHHHHHHhcChhhcCCCcccHHHHhhhhhhhhHHH
Confidence 9999999999999999999999999999999999999999999999887765443
No 11
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=4.6e-68 Score=597.49 Aligned_cols=359 Identities=52% Similarity=0.847 Sum_probs=339.3
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH-----------------------------
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------------------------- 120 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------------------------- 120 (447)
+|+|||||||||+|+|++++|+++|+.++++++..|..++|..++|+.+.+
T Consensus 4 ~~kkvLianrGeiavri~raa~elGi~~Vav~s~~D~~a~~~~~ADe~~~i~~~~~~~~~Yldid~Ii~iAk~~~iDaI~ 83 (1146)
T PRK12999 4 KIKKVLVANRGEIAIRIFRAATELGIRTVAIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYLDIDEIIRVAKQAGVDAIH 83 (1146)
T ss_pred cccEEEEECCcHHHHHHHHHHHHcCCEEEEEECCCCcCCchHHhCCEEEEcCCCCCcccCccCHHHHHHHHHHhCCCEEE
Confidence 589999999999999999999999999999999999999999998876521
Q ss_pred --------------------------------------------------------------HHHHHHhhhhCCcEEEEe
Q 013241 121 --------------------------------------------------------------EEAVKLADELGFPVMIKA 138 (447)
Q Consensus 121 --------------------------------------------------------------~e~~~~~~~ig~PvVvKP 138 (447)
+++.++++++|||+|+||
T Consensus 84 PgyGflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~eea~~~a~~iGyPvVVKP 163 (1146)
T PRK12999 84 PGYGFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEIGYPIMLKA 163 (1146)
T ss_pred eCCCccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCCCHHHHHHHHHHhCCCEEEEE
Confidence 667778889999999999
Q ss_pred CCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceee
Q 013241 139 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL 218 (447)
Q Consensus 139 ~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~ 218 (447)
+.|+||+||++|++.+||.++++.+.+++...|+++.+++|+||+|++|+++++++|++|+++++++++|++++++++++
T Consensus 164 ~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~~~ieVqvl~D~~G~vv~l~erdcsvqrr~qk~i 243 (1146)
T PRK12999 164 SAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGDKHGNVVHLYERDCSVQRRHQKVV 243 (1146)
T ss_pred CCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCeEEEEEEEEECCCCEEEEEccccceeecCccEE
Confidence 99999999999999999999999999888888988999999999998999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCC
Q 013241 219 EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGG 298 (447)
Q Consensus 219 ~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~ 298 (447)
+.+|++.++++.+++|.+.+.++++++||.|++++||++|++|++||+|||||+|++|+++|+++|+|++++++++++|.
T Consensus 244 e~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~dg~~yfIEINpRlqveh~vte~~tGvDlv~~~iriA~G~ 323 (1146)
T PRK12999 244 EIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDADGNFYFIEVNPRIQVEHTVTEEVTGIDIVQSQILIAEGA 323 (1146)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECCCCEEEEEEECCCCCcchHHHHHhCcCHHHHHHHHHCCC
Confidence 99999889999999999999999999999999999999998878999999999999999999999999999999999999
Q ss_pred CCCC------CccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeec-CCcccCCCCCccceEEEEE
Q 013241 299 KLRY------KQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVY-PDYVVPPSYDSLLGKLIVW 371 (447)
Q Consensus 299 ~l~~------~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~-~G~~v~~~~ds~lg~vi~~ 371 (447)
+++. .++++..+||||+|||++|||..+|.|++|+|+.+..|+++++|+|+++. .|..|+++|||+++|||+|
T Consensus 324 ~l~~~~~~~~~q~~~~~~g~Ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~~vr~d~~~~~~g~~v~~~~Ds~l~kvi~~ 403 (1146)
T PRK12999 324 TLHDLEIGIPSQEDIRLRGYAIQCRITTEDPANNFMPDTGRITAYRSPGGFGVRLDGGNAFAGAEITPYYDSLLVKLTAW 403 (1146)
T ss_pred CCCccccccccccccccceeEEEEEEEeecCccCccCCCcEEEEEEcCCCCcEEeeccccCCCCeeCCCccCCceEEEEE
Confidence 9875 35567778999999999999999999999999999999999999999875 8999999999999999999
Q ss_pred cCCHHHHHHHHHHhhhccEEeccccCHHHHHHhcCCccccCCccccccccccchhcc
Q 013241 372 APTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQ 428 (447)
Q Consensus 372 g~~~~eA~~~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~~~~~~ 428 (447)
|+|+++|+++|.+||++++|+|++||++||+++|.||+|++|+++|+||+++.+.+.
T Consensus 404 g~~~~~A~~~~~~aL~~~~i~gv~tn~~~l~~~~~~~~f~~~~~~t~~~~~~~~l~~ 460 (1146)
T PRK12999 404 GRTFEQAVARMRRALREFRIRGVKTNIPFLENVLKHPDFRAGDYTTSFIDETPELFD 460 (1146)
T ss_pred cCCHHHHHHHHHHHHhhcEEecccCcHHHHHHHhCCHhhcCCCccchhhhcChhhhh
Confidence 999999999999999999999999999999999999999999999999999854443
No 12
>PRK05586 biotin carboxylase; Validated
Probab=100.00 E-value=1.2e-66 Score=542.34 Aligned_cols=355 Identities=62% Similarity=1.032 Sum_probs=333.0
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH-----------------------------
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------------------------- 120 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------------------------- 120 (447)
||+||||+|||++|++++++|+++|+.++++++..|.++++..++|+.+.+
T Consensus 1 ~~kkvli~g~G~~~~~~~~aa~~lG~~~v~v~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~~~~~i~~~~~~~~~d~i~p 80 (447)
T PRK05586 1 MFKKILIANRGEIAVRIIRACREMGIETVAVYSEADKDALHVQLADEAVCIGPASSKDSYLNIQNIISATVLTGAQAIHP 80 (447)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCcEEEEcChHhccCcchhhCCEEEEeCCCChhhcccCHHHHHHHHHHcCCCEEEc
Confidence 489999999999999999999999999999988777777777777654321
Q ss_pred -------------------------------------------------------------HHHHHHhhhhCCcEEEEeC
Q 013241 121 -------------------------------------------------------------EEAVKLADELGFPVMIKAT 139 (447)
Q Consensus 121 -------------------------------------------------------------~e~~~~~~~ig~PvVvKP~ 139 (447)
+++.++++++|||+||||+
T Consensus 81 ~~~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~~~e~~~~~~~igyPvvvKP~ 160 (447)
T PRK05586 81 GFGFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEIGYPVMVKAS 160 (447)
T ss_pred CccccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 5566777889999999999
Q ss_pred CCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeE
Q 013241 140 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 219 (447)
Q Consensus 140 ~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~ 219 (447)
.|+||+|+++|++.+||.++++.+..++...|+++.+++|+||+|++|+++++++|..|+++++++++|+.+++++++.+
T Consensus 161 ~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~ei~v~v~~d~~G~~~~~~~~~~~~~~~~~~~~~ 240 (447)
T PRK05586 161 AGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQILGDNYGNVVHLGERDCSLQRRNQKVLE 240 (447)
T ss_pred CCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeEEEEEEEECCCCCEEEEeceecceEecccceEE
Confidence 99999999999999999999999888877778778999999999989999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCC
Q 013241 220 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 299 (447)
Q Consensus 220 ~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~ 299 (447)
.+|++.+++++++++.+.+.+++++|||.|++++||++|++|++||+|||||+++++++++.++|+|++++++++++|++
T Consensus 241 ~~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~~g~~~~iEvNpR~~~~~~~t~~~tGid~~~~~i~~a~G~~ 320 (447)
T PRK05586 241 EAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKDGNFYFMEMNTRIQVEHPITEMITGVDLVKEQIKIAYGEK 320 (447)
T ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcCCCCEEEEEEECCCCCCccceehhhCCCHHHHHHHHHcCCC
Confidence 99987799999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHH
Q 013241 300 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 379 (447)
Q Consensus 300 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~ 379 (447)
++..+.++..+||++++||++|+|...|.|++|.++.+..|.++++|+++++..|+.++++||+++|+||++|+|+++|+
T Consensus 321 l~~~~~~~~~~g~a~~~~i~a~~~~~~~~p~~G~~~~~~~~~~~~vr~~~~~~~g~~v~~~~~~~~~~vi~~g~~~~~a~ 400 (447)
T PRK05586 321 LSIKQEDIKINGHSIECRINAEDPKNGFMPCPGKIEELYIPGGLGVRVDSAVYSGYTIPPYYDSMIGKLIVYGKDREEAI 400 (447)
T ss_pred CCCcccccCcCceEEEEEeeccCcccCccCCCCEEEEEEcCCCCCeEeeccccCCCccCCccCchhheeEEEcCCHHHHH
Confidence 98877777788999999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred HHHHHhhhccEEeccccCHHHHHHhcCCccccCCccccccccccc
Q 013241 380 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHE 424 (447)
Q Consensus 380 ~~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~~ 424 (447)
+++.+||+++.|+|++||++||+.||.||+|++|+++|+||++++
T Consensus 401 ~~~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 445 (447)
T PRK05586 401 QKMKRALGEFIIEGVNTNIDFQFIILEDEEFIKGTYDTSFIEKKL 445 (447)
T ss_pred HHHHHHHhhcEEECccCCHHHHHHHhCCHhhcCCccccHHhHhhc
Confidence 999999999999999999999999999999999999999999876
No 13
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=100.00 E-value=5.9e-65 Score=530.07 Aligned_cols=356 Identities=67% Similarity=1.092 Sum_probs=331.1
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH-----------------------------
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------------------------- 120 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------------------------- 120 (447)
||+||||+|||++|++++++|+++|+.++.++...|.++++..++|+.+.+
T Consensus 1 ~~kkili~g~g~~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p 80 (449)
T TIGR00514 1 MLDKILIANRGEIALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHP 80 (449)
T ss_pred CcceEEEeCCCHHHHHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEe
Confidence 589999999999999999999999999999988777777777677664321
Q ss_pred -------------------------------------------------------------HHHHHHhhhhCCcEEEEeC
Q 013241 121 -------------------------------------------------------------EEAVKLADELGFPVMIKAT 139 (447)
Q Consensus 121 -------------------------------------------------------------~e~~~~~~~ig~PvVvKP~ 139 (447)
+++.++++++|||+||||.
T Consensus 81 g~g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~~e~~~~~~~ig~PvvvKP~ 160 (449)
T TIGR00514 81 GYGFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPVIIKAT 160 (449)
T ss_pred CCCccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCCHHHHHHHHHHhCCCEEEEeC
Confidence 5566777889999999999
Q ss_pred CCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeE
Q 013241 140 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 219 (447)
Q Consensus 140 ~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~ 219 (447)
.|+||+|+++|++.+||.++++.+..+....+++..++|||||+|++|++++++.|++|+++++++++|+++++++++.+
T Consensus 161 ~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~ 240 (449)
T TIGR00514 161 AGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLADKYGNAIYLGERDCSIQRRHQKLLE 240 (449)
T ss_pred CCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeEEEEEEEEcCCCCEEEEeccccCceecccceEE
Confidence 99999999999999999999998877666667778899999999989999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCC
Q 013241 220 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 299 (447)
Q Consensus 220 ~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~ 299 (447)
.+|++.++++..++|.+.+.++++++||.|++++||+++++|++||+|||||+++++++++.++|+|++++++++++|++
T Consensus 241 ~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~~g~~~viEiNpR~~~~~~~~~~~tGvdl~~~~i~~a~G~~ 320 (449)
T TIGR00514 241 EAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDKNGEFYFMEMNTRIQVEHPVTEMITGVDLIKEQIRIAAGEP 320 (449)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeCCCCEEEEEEECCCCCCcceeehhcCCcHHHHHHHHHCCCC
Confidence 99988899999999999999999999999999999999978889999999999999999999999999999999999999
Q ss_pred CCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHH
Q 013241 300 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 379 (447)
Q Consensus 300 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~ 379 (447)
++..+.....+++|+++|+++|||...|.|++|.++.+..|.+||+|+++++.+|+.++++||+++|+||++|+|++||+
T Consensus 321 l~~~~~~~~~~~~a~~~~i~~~~~~~~~~p~~g~~~~~~~~~~~gv~~~~~~~~G~~v~~~~~~~lg~vi~~g~~~~ea~ 400 (449)
T TIGR00514 321 LSLKQEDVVVRGHAIECRINAEDPIKTFLPSPGRITRYLPPGGPGVRWDSHVYSGYTVPPYYDSMIGKLITYGKTREVAI 400 (449)
T ss_pred CCCccccCCCceEEEEEEeeccCCCCCeeeCCCEEEEEEcCCCCCEeeccCccCCCEeCccccccceEEEEEcCCHHHHH
Confidence 98777667778999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccEEeccccCHHHHHHhcCCccccCCccccccccccch
Q 013241 380 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQ 425 (447)
Q Consensus 380 ~~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~~~ 425 (447)
+++.+|+++++|+|++||++||++||.|++|.+|+++|.||++++.
T Consensus 401 ~~~~~al~~~~i~g~~tn~~~l~~~~~~~~f~~~~~~t~~~~~~~~ 446 (449)
T TIGR00514 401 ARMKRALSEFIIDGIKTTIPFHQRILEDENFQHGGTNIHYLEKKLG 446 (449)
T ss_pred HHHHHHHhhcEEeCccCCHHHHHHHhcChhhcCCceeehhHhhhhh
Confidence 9999999999999999999999999999999999999999998764
No 14
>PRK08462 biotin carboxylase; Validated
Probab=100.00 E-value=9.4e-63 Score=513.18 Aligned_cols=353 Identities=55% Similarity=0.934 Sum_probs=327.2
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH-----------------------------
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------------------------- 120 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------------------------- 120 (447)
.|+||||+||||+|+|++++|+++|+.++++++..|.++++..++|+.+.+
T Consensus 3 ~~k~ili~~~g~~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~p 82 (445)
T PRK08462 3 EIKRILIANRGEIALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFP 82 (445)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEE
Confidence 589999999999999999999999999999999999999999998876633
Q ss_pred -------------------------------------------------------------HHHHHHhhhhCCcEEEEeC
Q 013241 121 -------------------------------------------------------------EEAVKLADELGFPVMIKAT 139 (447)
Q Consensus 121 -------------------------------------------------------------~e~~~~~~~ig~PvVvKP~ 139 (447)
+++.++++++|||+||||+
T Consensus 83 g~g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~~~~~~~~~~~~g~PvvvKP~ 162 (445)
T PRK08462 83 GYGFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILKAA 162 (445)
T ss_pred CCCccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEeC
Confidence 4566677889999999999
Q ss_pred CCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeE
Q 013241 140 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 219 (447)
Q Consensus 140 ~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~ 219 (447)
.|+||+|+++|++.+||.+++..+..++...++++.+++|+||+|++|++++++++.+|+++++++++|+.++++++..+
T Consensus 163 ~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~~~~g~~~~~g~~~~~~~~~~~~~~~ 242 (445)
T PRK08462 163 AGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILGDKHGNVIHVGERDCSLQRRHQKLIE 242 (445)
T ss_pred CCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCeEEEEEEEECCCCCEEEEEeccccceecccceEE
Confidence 99999999999999999999988877766667778899999999889999999999899999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCC
Q 013241 220 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 299 (447)
Q Consensus 220 ~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~ 299 (447)
.+|+..++++.++++.+.+.++++++||.|++++||+++++|++||+|||||+++++++++.++|+|++++++++++|++
T Consensus 243 ~~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~g~~~viEiNpR~~~~~~~~~~~~Gidl~~~~i~~a~G~~ 322 (445)
T PRK08462 243 ESPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDSNLDFYFMEMNTRLQVEHTVSEMVSGLDLIEWMIKIAEGEE 322 (445)
T ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeCCCCEEEEEEECCcCcCcceehhhhCCCHHHHHHHHHCCCC
Confidence 99987799999999999999999999999999999999987789999999999999999999999999999999999998
Q ss_pred CCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHH
Q 013241 300 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 379 (447)
Q Consensus 300 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~ 379 (447)
++.. .....+++|+++|+++++|. .|.|.+|.+..+..|.+..+|++.....|+.++++||+++|++|++|+|+++|+
T Consensus 323 l~~~-~~~~~~~~a~~~~~~~~~~~-~~~p~~G~l~~~~~~~~~~~r~~~~~~~g~~v~~~~~~~lg~vi~~g~~~~ea~ 400 (445)
T PRK08462 323 LPSQ-ESIKLKGHAIECRITAEDPK-KFYPSPGKITKWIAPGGRNVRMDSHAYAGYVVPPYYDSMIGKLIVWGEDRNRAI 400 (445)
T ss_pred cccc-cccCCceeEEEEEeccCCCC-ceecccCEEeEEEcCCCCCEEEccCcCCCCEeChhhccCccEEEEEcCCHHHHH
Confidence 8633 33456899999999999985 589999999988878788899999999999999999999999999999999999
Q ss_pred HHHHHhhhccEEeccccCHHHHHHhcCCccccCCccccccccccc
Q 013241 380 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHE 424 (447)
Q Consensus 380 ~~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~~ 424 (447)
+++.+++++++|+|++||++||++||.+|+|++|+++|+||++|+
T Consensus 401 ~~~~~al~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (445)
T PRK08462 401 AKMKRALKEFKVEGIKTTIPFHLEMMENADFINNKYDTKYLEEHF 445 (445)
T ss_pred HHHHHHHHhcEEECccCCHHHHHHHhcChhhcCCceechhhhhcC
Confidence 999999999999999999999999999999999999999999874
No 15
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=2.2e-62 Score=511.30 Aligned_cols=356 Identities=62% Similarity=1.017 Sum_probs=328.8
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH-----------------------------
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------------------------- 120 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------------------------- 120 (447)
||+||||+|+|++|++++++|+++|+.++.++...|..+++..++|+.+.+
T Consensus 1 ~~k~iLi~g~g~~a~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p 80 (451)
T PRK08591 1 MFDKILIANRGEIALRIIRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHP 80 (451)
T ss_pred CcceEEEECCCHHHHHHHHHHHHcCCeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEE
Confidence 589999999999999999999999999998877766666666666543310
Q ss_pred -------------------------------------------------------------HHHHHHhhhhCCcEEEEeC
Q 013241 121 -------------------------------------------------------------EEAVKLADELGFPVMIKAT 139 (447)
Q Consensus 121 -------------------------------------------------------------~e~~~~~~~ig~PvVvKP~ 139 (447)
+++.+++++++||+||||+
T Consensus 81 ~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~~~~~~~~~~~g~PvvvKP~ 160 (451)
T PRK08591 81 GYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKAT 160 (451)
T ss_pred CCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 5666777889999999999
Q ss_pred CCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeE
Q 013241 140 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 219 (447)
Q Consensus 140 ~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~ 219 (447)
.|+||+|+++|++.+||.++++.+..++...++++.++|||||+|++|+++++++|++|++++++.++|+.++++++..+
T Consensus 161 ~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~ 240 (451)
T PRK08591 161 AGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLADGHGNAIHLGERDCSLQRRHQKVLE 240 (451)
T ss_pred CCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEEcCCCCEEEEecccccceecceeEEE
Confidence 99999999999999999999999887776667778899999999888999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCC
Q 013241 220 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 299 (447)
Q Consensus 220 ~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~ 299 (447)
.+|++.++++.++++.+.+.++++++||.|++++||++|++|++||+|||||+++++++++.++|+|+++.++++++|++
T Consensus 241 ~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~~g~~~viEINpR~~~~~~~~~~~~Gvdl~~~~i~~a~G~~ 320 (451)
T PRK08591 241 EAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEKNGEFYFIEMNTRIQVEHPVTEMITGVDLVKEQIRIAAGEP 320 (451)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcCCCCEEEEEEECCCCccchhhhhhhCCCHHHHHHHHHCCCC
Confidence 99987799999999999999999999999999999999977889999999999999999999999999999999999999
Q ss_pred CCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHH
Q 013241 300 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 379 (447)
Q Consensus 300 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~ 379 (447)
++..+.+...+|+++++||++|+|...|.|++|.+..+.+|.+++++++..+.+|+.+++.||+++|+||++|+|+++|+
T Consensus 321 l~~~~~~~~~~~~a~~~~i~a~~~~~~~~p~~g~~~~~~~~~~~~v~~~~~~~~g~~v~~~~~~~lg~vi~~g~~~~~~~ 400 (451)
T PRK08591 321 LSIKQEDIVFRGHAIECRINAEDPAKNFMPSPGKITRYHPPGGPGVRVDSAVYTGYTIPPYYDSMIGKLIVHGETREEAI 400 (451)
T ss_pred CCCcccccCcCceEEEEEEeeecCccCcccCCCEeeEEEcCCCCCeeecccccCCCCcCccccCcceEEEEEcCCHHHHH
Confidence 98766666678999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHhhhccEEeccccCHHHHHHhcCCccccCCccccccccccch
Q 013241 380 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQ 425 (447)
Q Consensus 380 ~~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~~~ 425 (447)
+++.+++++++|+|++||++||++||.+|+|++|+++|+||+++++
T Consensus 401 ~~~~~~l~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~ 446 (451)
T PRK08591 401 ARMKRALSEFVIDGIKTTIPLHLRLLNDPNFQAGDYNIHYLEKKLA 446 (451)
T ss_pred HHHHHHHhhCEEECCCCCHHHHHHHhcCHhhhCCCcccHHHHhhhh
Confidence 9999999999999999999999999999999999999999999854
No 16
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=100.00 E-value=9.1e-59 Score=524.90 Aligned_cols=351 Identities=46% Similarity=0.768 Sum_probs=327.0
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH------------------------------
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI------------------------------ 120 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i------------------------------ 120 (447)
|+||||+|||++|++++++|+++|+.++++++..|..+.+..++|+.+.+
T Consensus 1 ~~kvLI~g~Geia~~iiraak~lGi~~v~v~sd~d~~a~~v~~AD~~v~l~~~~~~~sy~d~e~Il~~a~~~~idaIiPG 80 (1201)
T TIGR02712 1 FDTVLIANRGEIAVRIIRTLRRMGIRSVAVYSDADAASQHVLDADEAVCLGGAPAAESYLDIDKILAAAKKTGAQAIHPG 80 (1201)
T ss_pred CcEEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCccchhhCCEEEEcCCCCcccCCCCHHHHHHHHHHHCCCEEEeC
Confidence 68999999999999999999999999999999888888888888776531
Q ss_pred -----------------------------------------------------------HHHHHHhhhhCCcEEEEeCCC
Q 013241 121 -----------------------------------------------------------EEAVKLADELGFPVMIKATAG 141 (447)
Q Consensus 121 -----------------------------------------------------------~e~~~~~~~ig~PvVvKP~~g 141 (447)
+++.++++++|||+||||..|
T Consensus 81 ~gflsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~~lv~s~dea~~~a~~igyPvVVKP~~g 160 (1201)
T TIGR02712 81 YGFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGLLSSLDEALEAAKEIGYPVMLKSTAG 160 (1201)
T ss_pred CcccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeecCCHHHHHHHHHhcCCeEEEEECCC
Confidence 667777889999999999999
Q ss_pred CCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEec
Q 013241 142 GGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEA 221 (447)
Q Consensus 142 ~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~ 221 (447)
+||+|+++|++.+|+.++++.+.+.+.+.|++..++|||||++++|+++++++|++|+++.+++++|+++++++|+++++
T Consensus 161 gGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~eveV~v~~Dg~g~vv~lg~rd~s~qr~~~k~vee~ 240 (1201)
T TIGR02712 161 GGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFGDGKGKVVALGERDCSLQRRNQKVVEET 240 (1201)
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEECCCCeEEEeeEEEeeeEecCccEEEEc
Confidence 99999999999999999999998877777888889999999977999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEec-CCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCC
Q 013241 222 PSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE-RGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKL 300 (447)
Q Consensus 222 P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~-~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l 300 (447)
|++.++++.+++|.+.+.+++++++|+|++++||++|. +|++||+|||||++++|++++.++|+|+++++++++.|+++
T Consensus 241 Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~~y~lEVNpRlq~~~~lte~~tGvDlve~~ir~a~G~~~ 320 (1201)
T TIGR02712 241 PAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTRLQVEHPVTEMVTGLDLVEWMIRIAAGELP 320 (1201)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCCEEEEEEECCcCcchhhHHHHhCCCHHHHHHHHHcCCCC
Confidence 99889999999999999999999999999999999984 57899999999999999999999999999999999999998
Q ss_pred CCCcccc--ccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHH
Q 013241 301 RYKQEDI--VLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKA 378 (447)
Q Consensus 301 ~~~~~~~--~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA 378 (447)
++.+... ...|+++++|+|+|+|..+|.|++|.++.+..|. ++|++.++..|++|.++||+++|+||++|+|+++|
T Consensus 321 ~~~~~~~~~~~~g~ai~~riyae~p~~~~~p~~G~l~~v~~p~--~vrvd~~v~~G~~V~~~~d~~la~vI~~g~~r~eA 398 (1201)
T TIGR02712 321 DFASLNISLTPRGAAIEARVYAENPAKNFQPSPGLLTDVQFPD--DVRVDTWVETGTEVSPEYDPMLAKIIVHGSDREDA 398 (1201)
T ss_pred CccccccccccceEEEEEEEeccCcccCcCCCCceeeEEECCC--eEEEeceecCCCEECCccCCCeEEEEEEECCHHHH
Confidence 7664333 4679999999999999999999999998876654 49999999999999999999999999999999999
Q ss_pred HHHHHHhhhccEEeccccCHHHHHHhcCCccccCCcccccccccc
Q 013241 379 IERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKH 423 (447)
Q Consensus 379 ~~~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~ 423 (447)
++++.+++++++|+|+.||++||++||.+++|++|+++|+||++.
T Consensus 399 ~~~~~~al~~i~i~G~~tn~~~l~~~~~~~~~~~~~~~t~~l~~~ 443 (1201)
T TIGR02712 399 ILKLHQALAETRVYGIETNLDYLRSILSSETFRSAQVSTRTLNSF 443 (1201)
T ss_pred HHHHHHHHhceEEcCcCcCHHHHHHHhcChhhcCCCccchhhhhC
Confidence 999999999999999999999999999999999999999999874
No 17
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=100.00 E-value=1e-58 Score=497.25 Aligned_cols=304 Identities=40% Similarity=0.647 Sum_probs=287.1
Q ss_pred HHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcE
Q 013241 121 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNV 200 (447)
Q Consensus 121 ~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~v 200 (447)
+|.++.++.+|||+|||+..||||+|++.|++.+|+...|+++..| +...++++.+...++||++||+++|++|++
T Consensus 229 eegLeaae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~E----vPGSPIFlMK~a~~ARHlEVQlLaDqYGn~ 304 (2196)
T KOG0368|consen 229 EEGLEAAEKIGFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQNE----VPGSPIFLMKLADQARHLEVQLLADQYGNV 304 (2196)
T ss_pred HHHHHHHHhcCCceEEEeccCCCCcceeeccchHHHHHHHHHHHhh----CCCCceeeeecccCcceeeeehhhhhcCCE
Confidence 8889999999999999999999999999999999999999998887 467899999999999999999999999999
Q ss_pred EEEeeeeeccccccceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEe-cCCCEEEEEEeccCCCccchh
Q 013241 201 VHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVT 279 (447)
Q Consensus 201 v~l~~r~~s~~~~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d-~~G~~~~iEiNpR~~g~~~v~ 279 (447)
+.++.||||+|||+||++|++|+.-.+.+..++|++.|+++++.+||.++++||+++. ++|+|||+|.|||+|+|||.|
T Consensus 305 IsLfgRDCSiQRRhQKIIEEAPatIap~etf~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~~fyFLELNPRLQVEHP~T 384 (2196)
T KOG0368|consen 305 ISLFGRDCSIQRRHQKIIEEAPATIAPPETFKKMEQAAVRLAKLVGYVSAGTVEYLYSPDDGEYYFLELNPRLQVEHPTT 384 (2196)
T ss_pred eEeecccchHHHHHHHHHhhCCcccCCHHHHHHHHHHHHHHHHhhcceecceEEEEEecCCCcEEEEecCccccccCCch
Confidence 9999999999999999999999998889999999999999999999999999999999 589999999999999999999
Q ss_pred hhhcCCCHHHHHHHHHcCCCCCCC---------------------ccccccceeEEEEEEeeCCCCccccCCCCceeEEe
Q 013241 280 EMISSVDLIEEQIHVAMGGKLRYK---------------------QEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYL 338 (447)
Q Consensus 280 e~~~GiDl~~~~i~~a~G~~l~~~---------------------~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~ 338 (447)
|+++|+||+..|+++|+|.|+..- +..+.++||++.|||+.|||+.+|+|++|+|..+.
T Consensus 385 Emis~VNlPAaQlQIAMGiPL~~I~dIR~lYg~~~~GdS~idfe~~~~p~pkgHciA~RITsEdPddgFkPSsG~v~eLn 464 (2196)
T KOG0368|consen 385 EMISDVNLPAAQLQIAMGIPLHRIPDIRRLYGLEPTGDSPIDFENAKLPCPKGHCIAARITSEDPDDGFKPSSGTVQELN 464 (2196)
T ss_pred hhhhcCCccHHHHHHHhCCchhhchHHHHHcCCCCCCCCCCChhhccCCCCCceEEEEEeeccCCCCCcCCCCCeeEEec
Confidence 999999999999999999998310 11235689999999999999999999999999998
Q ss_pred cCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhhccEEec-cccCHHHHHHhcCCccccCCcccc
Q 013241 339 PAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITG-VPTTIEYHKLILDVEDFKNGKVDT 417 (447)
Q Consensus 339 ~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G-~~tn~~~~~~~l~~~~f~~g~~~t 417 (447)
.++.+.++-.+.+..|..|..+-||.+||++++|+||++|++.|.-||+++.|+| ++|+++||..+|++++|++++++|
T Consensus 465 FrSssnvWgYFSV~~~g~iHeFadSQFGHiFa~Ge~R~eAi~nMv~aLKelsIRgdFrT~VeYLI~LLet~dF~~N~i~T 544 (2196)
T KOG0368|consen 465 FRSSSNVWGYFSVGNGGGIHEFADSQFGHIFAFGESRQEAIANMVVALKELSIRGDFRTTVEYLIDLLETEDFESNKIDT 544 (2196)
T ss_pred cCCCCCeeEEEEecCCCceeeccccccceeeeecCcHHHHHHHHHHHHHheeeccccCchHHHHHHHHHhhhhhhccCcc
Confidence 8888888877888899999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred ccccccchhcc
Q 013241 418 AFIPKHEQELQ 428 (447)
Q Consensus 418 ~~~~~~~~~~~ 428 (447)
+|||+.++...
T Consensus 545 gWLD~~Ia~kv 555 (2196)
T KOG0368|consen 545 GWLDKRIAMKV 555 (2196)
T ss_pred hhHHHHHHHHh
Confidence 99999887654
No 18
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=2.8e-52 Score=435.19 Aligned_cols=355 Identities=52% Similarity=0.827 Sum_probs=311.2
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccC------------------------------
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVC------------------------------ 119 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~------------------------------ 119 (447)
|++||||+|+|+.++.++++++++|+.++.+.+..+..+.+..++|+.+.
T Consensus 1 ~~~~ililg~g~~~~~~~~~a~~lG~~~v~~~~~~~~~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~~~~~~id~I~p 80 (450)
T PRK06111 1 MFQKVLIANRGEIAVRIIRTCQKLGIRTVAIYSEADRDALHVKMADEAYLIGGPRVQESYLNLEKIIEIAKKTGAEAIHP 80 (450)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCeEEEEechhhccCcchhhCCEEEEcCCCCccccccCHHHHHHHHHHhCCCEEEe
Confidence 58999999999999999999999999998876444433333332322110
Q ss_pred ---------------------H---------------------------------------HHHHHHhhhhCCcEEEEeC
Q 013241 120 ---------------------I---------------------------------------EEAVKLADELGFPVMIKAT 139 (447)
Q Consensus 120 ---------------------i---------------------------------------~e~~~~~~~ig~PvVvKP~ 139 (447)
+ +++.++++.++||+||||+
T Consensus 81 ~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~e~~~~~~~~~~P~VvKP~ 160 (450)
T PRK06111 81 GYGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIARQIGYPVMLKAS 160 (450)
T ss_pred CCCccccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEeC
Confidence 0 4566677889999999999
Q ss_pred CCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeE
Q 013241 140 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 219 (447)
Q Consensus 140 ~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~ 219 (447)
.|+||+|+++|++.+|+.++++.+...+...++++.+++||||+|++|++++++.+.+|+++.++.++|+.++.+++..+
T Consensus 161 ~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~ 240 (450)
T PRK06111 161 AGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQLLADTHGNTVYLWERECSVQRRHQKVIE 240 (450)
T ss_pred CCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcEEEEEEEEcCCCCEEEEEeecccccccccceEE
Confidence 99999999999999999999998766555556677899999999988999999999889999998888888888888888
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCC
Q 013241 220 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 299 (447)
Q Consensus 220 ~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~ 299 (447)
.+|++.+++++.+++.+.+.++++++||.|++++||+++++|++||+|||||+++++++++.++|+|++++++++++|++
T Consensus 241 ~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~g~~~viEiN~R~~~~~~~~~~~~Gvd~~~~~i~~~~G~~ 320 (450)
T PRK06111 241 EAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKNFYFLEMNTRLQVEHPVTEEITGIDLVEQQLRIAAGEK 320 (450)
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEEECCcCCcchhhHHHhCcCHHHHHHHHhcCCC
Confidence 88888789999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHH
Q 013241 300 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 379 (447)
Q Consensus 300 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~ 379 (447)
++..+.+....++++..+++++++. .+.|.+|.++.+..+..++++++.++..|+.+.+.+++++|+|+++|+|+++|.
T Consensus 321 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~p~~G~~~~i~~~~~~~~~~~~~~~~G~~v~~~~~~~lg~vi~~g~~~~ea~ 399 (450)
T PRK06111 321 LSFTQDDIKRSGHAIEVRIYAEDPK-TFFPSPGKITDLTLPGGEGVRHDHAVENGVTVTPFYDPMIAKLIAHGETREEAI 399 (450)
T ss_pred CCCccccCCcCceEEEEEEecCCCC-CcccCCCeeCeEecCCCCCEEEEecccCCCEeChhhcccceEEEEEeCCHHHHH
Confidence 9876655556788999999998764 467889999877656667899998999999999989999999999999999999
Q ss_pred HHHHHhhhccEEeccccCHHHHHHhcCCccccCCccccccccccch
Q 013241 380 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQ 425 (447)
Q Consensus 380 ~~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~~~ 425 (447)
+++.++++.++++|++||+++|+.+|.+++|++|.++|+||++.+.
T Consensus 400 ~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (450)
T PRK06111 400 SRLHDALEELKVEGIKTNIPLLLQVLEDPVFKAGGYTTGFLTKQLV 445 (450)
T ss_pred HHHHHHHHhCEEeCccCCHHHHHHHhcChhhcCCcccchHHhhhhh
Confidence 9999999999999999999999999999999999999999987643
No 19
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=100.00 E-value=1.8e-42 Score=324.22 Aligned_cols=203 Identities=46% Similarity=0.812 Sum_probs=181.6
Q ss_pred HHHHHHHHcCCCeeEEEec--cChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHH
Q 013241 85 RVIRTAHEMGIPCVAVYST--IDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQ 162 (447)
Q Consensus 85 ri~r~~~~lGi~~vav~~~--~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~ 162 (447)
+..+.++++|+|++..... .+. +++.++++++|||++|||..|+||+||++|++.+||.++++.
T Consensus 4 ~~~~~~~~~gvp~~pg~~~~~~~~--------------eea~~~a~~iGyPVliKas~ggGG~gm~iv~~~~eL~~~~~~ 69 (211)
T PF02786_consen 4 RFRKLAKKLGVPVPPGSTVPISSV--------------EEALEFAEEIGYPVLIKASAGGGGRGMRIVHNEEELEEAFER 69 (211)
T ss_dssp HHHHHHHHTT-BBSSBESSSBSSH--------------HHHHHHHHHH-SSEEEEETTSSTTTSEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHCCCCcCCCCCCCCCCH--------------HHHHHHHHhcCCceEEeecccccccccccccchhhhhhhhhh
Confidence 3467788999999988877 777 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCHHHHHHHHHHHHHHH
Q 013241 163 AKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAA 242 (447)
Q Consensus 163 ~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~ 242 (447)
+..++..+|++.+++||+|+++++|++||+++|++|++++++.++|+.|++++|.++++|++.++++.+++|.+.+.+++
T Consensus 70 ~~~~s~~~fg~~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~~~~~hs~dsi~~~P~~~L~~~~~~~l~~~a~~ia 149 (211)
T PF02786_consen 70 AQRESPAAFGDGPVLIEKFIEGAREIEVQVIRDGKGNVVHLGERECSEQRHSQDSIEEAPAQTLSDEERQKLREAAKKIA 149 (211)
T ss_dssp HHHHHHHHHSTS-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEEEEEETTEEEEEEES-SSS-HHHHHHHHHHHHHHH
T ss_pred ccccCccccccceEEEeeehhhhhhhhhhhhhccccceeeeeeeccccccccccceeEeeccccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccEeEEEEEEec-CCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCCC
Q 013241 243 ASIGYIGVGTVEFLLDE-RGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLR 301 (447)
Q Consensus 243 ~alg~~G~~~vEf~~d~-~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l~ 301 (447)
+++||.|++|+||++++ +|++||||+|||+|.+|+++|+++|+||+++++++++|++|+
T Consensus 150 ~~l~~~G~~tvef~~~~~~~~~y~lEvNpR~~~~~p~~e~~tg~dlv~~~~~ia~G~~L~ 209 (211)
T PF02786_consen 150 RALGYVGAGTVEFAVDPDDGEFYFLEVNPRLQREHPVTEKVTGYDLVRVQIRIALGEPLD 209 (211)
T ss_dssp HHTT-EEEEEEEEEEETTTTEEEEEEEESS--TTHHHHHHHHT--HHHHHHHHHTT--GS
T ss_pred HhhCeeecceEEEEEccCccceeeecccCCCCCcchHHHHHHCCCHHHHHHHHHCCCCCC
Confidence 99999999999999995 889999999999999999999999999999999999999885
No 20
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=100.00 E-value=7.5e-32 Score=286.99 Aligned_cols=305 Identities=21% Similarity=0.249 Sum_probs=229.9
Q ss_pred cCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH----------------------------
Q 013241 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI---------------------------- 120 (447)
Q Consensus 69 ~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i---------------------------- 120 (447)
.+.+||+|++.|..+..++++++++|+.++.+....+ ++...++|+.+..
T Consensus 20 ~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~--apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~v~~~ 97 (577)
T PLN02948 20 VSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLED--CPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEHVDVD 97 (577)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC--CchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCCCCHH
Confidence 4568999999999999999999999999887654332 2333333222110
Q ss_pred ------------------------------------------------HHHHHHhhhhCCcEEEEeCCCC-CCcCeEEEC
Q 013241 121 ------------------------------------------------EEAVKLADELGFPVMIKATAGG-GGRGMRLAK 151 (447)
Q Consensus 121 ------------------------------------------------~e~~~~~~~ig~PvVvKP~~g~-Gg~Gv~~v~ 151 (447)
+++.++.+++|||+||||+.++ +|+|+++|+
T Consensus 98 ~l~~le~~gi~v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~v~~~~el~~~~~~ig~P~VvKP~~ggs~g~Gv~~v~ 177 (577)
T PLN02948 98 TLEALEKQGVDVQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFMEIDDLESAEKAGDLFGYPLMLKSRRLAYDGRGNAVAK 177 (577)
T ss_pred HHHHHHhcCCccCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEEeCCHHHHHHHHHhcCCcEEEEeCCCCCCCCCeEEEC
Confidence 6677778899999999999877 799999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCHHHH
Q 013241 152 EPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELR 231 (447)
Q Consensus 152 ~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~~~~ 231 (447)
+.+|+.++++.+.. + +.+++||+||++.+|++|.++++.+|++..++. .+..++.+.......|+. ++++..
T Consensus 178 ~~~eL~~a~~~~~~-----~-~~~vlvEefI~~~~EisV~v~r~~~G~i~~~p~-~E~~~~~~~~~~~~~Pa~-l~~~~~ 249 (577)
T PLN02948 178 TEEDLSSAVAALGG-----F-ERGLYAEKWAPFVKELAVMVARSRDGSTRCYPV-VETIHKDNICHVVEAPAN-VPWKVA 249 (577)
T ss_pred CHHHHHHHHHHhhC-----C-CCcEEEEecCCCCeEEEEEEEECCCCCEEEecC-cccEEECCeeEEEEECCC-CCHHHH
Confidence 99999999887532 1 368999999999899999999988888776543 333344443334467886 999999
Q ss_pred HHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCCCCCccccccce
Q 013241 232 KAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQG 311 (447)
Q Consensus 232 ~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g 311 (447)
+++.+.+.+++++|++.|++++||+++++|++||+|||||++++..++...+++|+++.+++.++|.|++.... ...
T Consensus 250 ~~~~~~A~~~~~aLg~~Gv~~vEffv~~dG~v~v~EInpRpg~sGh~t~ea~~~s~fe~~vRa~lGlpl~~~~~---~~~ 326 (577)
T PLN02948 250 KLATDVAEKAVGSLEGAGVFGVELFLLKDGQILLNEVAPRPHNSGHYTIEACYTSQFEQHLRAVLGLPLGDTSM---KVP 326 (577)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEEEEcCCCcEEEEEEeCCCCCCCceeeecccCCHHHHHHHHHcCCCCCCccc---cCC
Confidence 99999999999999999999999999988999999999999986556667889999999999999999875432 234
Q ss_pred eEEEEEEeeCCCC-ccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhhccE
Q 013241 312 HSIECRINAEDPF-KNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTI 390 (447)
Q Consensus 312 ~ai~~ri~ae~p~-~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~ 390 (447)
++++..+..++.. .++.+....+.... ..|++++.....++. .+ .+++|+|+++|+|++++.+++..+++.+.
T Consensus 327 ~A~m~nl~g~~~~~~g~~~~~~~~~~~~--~~p~~~v~~ygk~~~--r~--~rkmGhV~~~g~~~~e~~~~~~~~~~~~~ 400 (577)
T PLN02948 327 AAIMYNILGEDEGEAGFRLAHQLMGRAL--NIPGASVHWYGKPEM--RK--QRKMGHITVVGPSAAEVEARLDQLLAEES 400 (577)
T ss_pred cEEEEEEeccccccccccchhhHHHHHh--hCCCCEEEEecCCCC--CC--CCeeEEEEEecCCHHHHHHHHHHHHhhhc
Confidence 5788888876432 12222211121111 224555443333332 22 46799999999999999999999998765
Q ss_pred Ee
Q 013241 391 IT 392 (447)
Q Consensus 391 i~ 392 (447)
+.
T Consensus 401 ~~ 402 (577)
T PLN02948 401 AD 402 (577)
T ss_pred cC
Confidence 43
No 21
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=100.00 E-value=1.6e-31 Score=272.93 Aligned_cols=251 Identities=17% Similarity=0.204 Sum_probs=185.4
Q ss_pred HHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcE
Q 013241 121 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNV 200 (447)
Q Consensus 121 ~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~v 200 (447)
+++.++++++|||+|+||++|+||+|+++|++.+||..+++.+...++ ..++.+++||||++..|+++.++.+.+|++
T Consensus 126 ~~~~~~~~~~g~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~--~~~~~~ivEe~i~~~~E~sv~~~~~~~g~~ 203 (380)
T TIGR01142 126 DELREAVEKIGYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGAR--GGAGRVIVEEFIDFDYEITLLTVRHVDGNT 203 (380)
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhcc--CCCCCEEEEEecCCCEEEEEEEEEcCCCCE
Confidence 666677788999999999999999999999999999999988754321 123689999999986899999988777765
Q ss_pred EEEeeeeeccccccceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhh
Q 013241 201 VHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTE 280 (447)
Q Consensus 201 v~l~~r~~s~~~~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e 280 (447)
...... ...+..........|+. ++++..+++.+.+.+++++||+.|++++||+++++ .+||+|+|||++++...+.
T Consensus 204 ~~~~~~-~~~~~~~~~~~~~~p~~-l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~-~~~viEinpR~~~~~~~~~ 280 (380)
T TIGR01142 204 TFCAPI-GHRQIDGDYHESWQPQE-MSEKALEEAQRIAKRITDALGGYGLFGVELFVKGD-EVIFSEVSPRPHDTGMVTL 280 (380)
T ss_pred EEecCc-ceEEeCCeeEEEECCCC-CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECC-cEEEEEeecCCCCCceEEe
Confidence 443211 11222222222356776 99999999999999999999999999999999876 4999999999998744443
Q ss_pred hhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCccccCCCCcee---EE-ecCCCCcEEEeeeecCCcc
Q 013241 281 MISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRIT---AY-LPAGGPFVRMDSHVYPDYV 356 (447)
Q Consensus 281 ~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~---~~-~~~~~~~vr~d~~~~~G~~ 356 (447)
...|+|+++++++.++|.+++... ..+.+....+..+. .|++. .+ .....|+++++....+|..
T Consensus 281 ~~~g~~~~~~~~r~~~G~~~~~~~----~~~~~~~~~i~~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 348 (380)
T TIGR01142 281 ISQGLSEFALHVRAILGLPIPGIP----QLGPAASAVIKAKV--------TGYSPAFRGLEKALSVPNTQVRLFGKPEAY 348 (380)
T ss_pred eecCCCHHHHHHHHHcCCCCCCcc----ccCCceEEEEEccc--------ccccchhhHHHHHHcCCCCEEEECCCCcCC
Confidence 455999999999999999886432 23344555555432 22222 11 1122366765554444532
Q ss_pred cCCCCCccceEEEEEcCCHHHHHHHHHHhhhccEEe
Q 013241 357 VPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIIT 392 (447)
Q Consensus 357 v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~ 392 (447)
..+++|+|++.|+|.+++.+++.++.+.++|+
T Consensus 349 ----~~~~~G~v~~~~~s~~~~~~~~~~~~~~i~~~ 380 (380)
T TIGR01142 349 ----VGRRLGVALATAKSVEAARERAEEVAHAVEVR 380 (380)
T ss_pred ----CCCcCEEEEEecCCHHHHHHHHHHHHhhccCC
Confidence 23569999999999999999999999888764
No 22
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=100.00 E-value=6.3e-31 Score=267.83 Aligned_cols=289 Identities=20% Similarity=0.317 Sum_probs=223.1
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH------------------------------
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI------------------------------ 120 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i------------------------------ 120 (447)
+++|+|++.|..+..++++++++|+.++.+....+ ++...++|+.+..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~--~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~e~e~i~~~~l 79 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPD--SPAAQVADEVIVADYDDVAALRELAEQCDVITYEFENVPAEAL 79 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC--CchhHhCceEEecCCCCHHHHHHHHhcCCEEEeCcCCCCHHHH
Confidence 57899999999999999999999999887654332 2333333332211
Q ss_pred ---------------------------------------------HHHHHHhhhhCCcEEEEeCCCC-CCcCeEEECCHH
Q 013241 121 ---------------------------------------------EEAVKLADELGFPVMIKATAGG-GGRGMRLAKEPD 154 (447)
Q Consensus 121 ---------------------------------------------~e~~~~~~~ig~PvVvKP~~g~-Gg~Gv~~v~~~~ 154 (447)
+++.++++++|||+|+||+.|+ +|+|++++++.+
T Consensus 80 ~~l~~~~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~v~s~~~l~~~~~~~g~P~vlKp~~~g~~g~Gv~~v~~~~ 159 (372)
T PRK06019 80 DALAARVPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFAVVDSAEDLEAALADLGLPAVLKTRRGGYDGKGQWVIRSAE 159 (372)
T ss_pred HHHhcCCeeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCceEeCCHHHHHHHHHHcCCcEEEEeCCCCcCCCCeEEECCHH
Confidence 6777778889999999999865 899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCHHHHHHH
Q 013241 155 EFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAM 234 (447)
Q Consensus 155 el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~~~~~~l 234 (447)
|+.++++.+ ++.+++|||||++.+|+++.++++.+|++..+...+ ..++.+.......|+. +++++.+++
T Consensus 160 el~~a~~~~--------~~~~~ivEe~I~~~~E~sv~~~~~~~G~~~~~p~~e-~~~~~gi~~~~~~pa~-~~~~~~~~~ 229 (372)
T PRK06019 160 DLEAAWALL--------GSVPCILEEFVPFEREVSVIVARGRDGEVVFYPLVE-NVHRNGILRTSIAPAR-ISAELQAQA 229 (372)
T ss_pred HHHHHHHhc--------CCCCEEEEecCCCCeEEEEEEEECCCCCEEEeCCcc-cEEeCCEEEEEECCCC-CCHHHHHHH
Confidence 999888764 247899999999769999999999888887664432 2333333333457875 899999999
Q ss_pred HHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEE
Q 013241 235 GDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSI 314 (447)
Q Consensus 235 ~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai 314 (447)
.+.+.+++++|||.|++++||+++++|++||+|+|||++++..++..++++|+++.+++..+|.|++.. .....++
T Consensus 230 ~~~a~~i~~~L~~~G~~~vEff~~~dg~~~v~EinpR~~~sg~~t~~~~~~sqf~~~ira~~Glpl~~~----~~~~~~~ 305 (372)
T PRK06019 230 EEIASRIAEELDYVGVLAVEFFVTGDGELLVNEIAPRPHNSGHWTIEACSTSQFEQHLRAILGLPLGTT----RLLSPAV 305 (372)
T ss_pred HHHHHHHHHHcCccceeEEEEEEcCCCeEEEEEecCCccCcccEEhhhcCccHHHHHHHHHcCCCCCCc----cccCceE
Confidence 999999999999999999999999889999999999999987788889999999999999999988622 2344577
Q ss_pred EEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhh
Q 013241 315 ECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALN 387 (447)
Q Consensus 315 ~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~ 387 (447)
+..+..++. .. .+ +..+. ..|++. .++|......+ ++.+|||.+.|+|.+++.++++.+..
T Consensus 306 m~nilg~~~---~~--~~-~~~~~--~~~~~~--~~~ygk~~~~~--~rk~Ghv~~~~~~~~~~~~~~~~~~~ 366 (372)
T PRK06019 306 MVNLLGDDW---LE--PR-WDALL--ALPGAH--LHLYGKAEARP--GRKMGHVTVLGDDVEALLAKLEALAP 366 (372)
T ss_pred EEEEECchh---hh--hH-HHHHh--hCCCCE--EEECCCCCCCC--CCceEEEEeecCCHHHHHHHHHHHHh
Confidence 877776431 00 01 11111 124444 35564434444 67899999999999999999999876
No 23
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=2.6e-31 Score=301.02 Aligned_cols=260 Identities=23% Similarity=0.345 Sum_probs=199.1
Q ss_pred HHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcE
Q 013241 121 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNV 200 (447)
Q Consensus 121 ~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~v 200 (447)
+++.++++++|||+||||+.|+||+|+++|++++||.+++......+ ....++|||||+|.+|+++++++|..|++
T Consensus 152 ~e~~~~~~~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s----~~~~vlVEe~I~G~~Eiev~v~rd~~g~~ 227 (1050)
T TIGR01369 152 EEALAAAKEIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSAS----PINQVLVEKSLAGWKEIEYEVMRDSNDNC 227 (1050)
T ss_pred HHHHHHHHHhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcC----CCCcEEEEEcccCceEEEEEEEEeCCCCE
Confidence 67777888999999999999999999999999999999887765432 12689999999998899999999999998
Q ss_pred EEEeeeeecccc------ccceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEec-CCCEEEEEEeccCC
Q 013241 201 VHFGERDCSIQR------RNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE-RGSFYFMEMNTRIQ 273 (447)
Q Consensus 201 v~l~~r~~s~~~------~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~-~G~~~~iEiNpR~~ 273 (447)
+.++ ..+. +....+..+|+..++++..+++.+.+.+++++|||.|.++|||++++ +|++|++|||||++
T Consensus 228 ~~~~----~~e~~~p~gvh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~~~Vef~l~~~~g~~~viEiNPR~~ 303 (1050)
T TIGR01369 228 ITVC----NMENFDPMGVHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGGCNVQFALNPDSGRYYVIEVNPRVS 303 (1050)
T ss_pred EEEe----eceeccCcceecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEECCCCcEEEEEeecCcC
Confidence 8773 3332 23445667888778999999999999999999999999999999995 57899999999999
Q ss_pred CccchhhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCccccCCCCceeE--EecCCCCcEEEeeee
Q 013241 274 VEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITA--YLPAGGPFVRMDSHV 351 (447)
Q Consensus 274 g~~~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~--~~~~~~~~vr~d~~~ 351 (447)
+++.+++.++|+|+.+..+++++|.++.....++. | +++ ..|.|+.+.+.. ..++...+.+.
T Consensus 304 ~s~~l~s~atG~pl~~~~~~~alG~~l~~~~n~i~--g---------~~~-~~~~p~~~~~~~k~p~~~~~~~~~~---- 367 (1050)
T TIGR01369 304 RSSALASKATGYPIAKVAAKLAVGYGLDELKNPVT--G---------TTP-ASFEPSLDYVVVKIPRWDFDKFAGV---- 367 (1050)
T ss_pred cchhhhhHHhCCCHHHHHHHHHcCCCchhhcCCCc--C---------cCc-cccCcCCCeEEEEEEeCCCCCCCcc----
Confidence 99889999999999999999999998865443332 1 233 246677777532 12222211111
Q ss_pred cCCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhhccEEeccc------cCHHHHHHhcCCc
Q 013241 352 YPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVP------TTIEYHKLILDVE 408 (447)
Q Consensus 352 ~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G~~------tn~~~~~~~l~~~ 408 (447)
...+...+.+ +|+|+++|+|++||++++.++|+.= ..|.. .+.+-|...|.+|
T Consensus 368 --~~~~~~~~k~-~G~v~~~g~~~~ea~~ka~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 426 (1050)
T TIGR01369 368 --DRKLGTQMKS-VGEVMAIGRTFEEALQKALRSLEIG-ATGFDLPDREVEPDEDLWRALKKP 426 (1050)
T ss_pred --cCCcCcccce-eeEEEEECCCHHHHHHHHHHHhccC-CCCCCccccCCCCHHHHHHhcCCC
Confidence 2222233333 9999999999999999999999863 23321 1234455566654
No 24
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=5.2e-31 Score=297.92 Aligned_cols=247 Identities=21% Similarity=0.323 Sum_probs=195.2
Q ss_pred HHHHHHhhhhC-CcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCc
Q 013241 121 EEAVKLADELG-FPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGN 199 (447)
Q Consensus 121 ~e~~~~~~~ig-~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~ 199 (447)
+++.++++++| ||+||||+++.||+|+.+|+|.+||.++++.+...+ .++.++|||||.|.+|+++++++|..|+
T Consensus 169 eea~~~~~~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s----~~~~VLVEe~I~G~kE~ev~Vl~D~~g~ 244 (1102)
T PLN02735 169 DECFEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAAS----ITSQVLVEKSLLGWKEYELEVMRDLADN 244 (1102)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcC----CCCeEEEEEecCCCeEEEEEEEEcCCCC
Confidence 66777788898 999999999999999999999999999998765432 2578999999999889999999998788
Q ss_pred EEEEeeeeec--cccccceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCc-cEeEEEEEEe-cCCCEEEEEEeccCCCc
Q 013241 200 VVHFGERDCS--IQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYI-GVGTVEFLLD-ERGSFYFMEMNTRIQVE 275 (447)
Q Consensus 200 vv~l~~r~~s--~~~~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~-G~~~vEf~~d-~~G~~~~iEiNpR~~g~ 275 (447)
++.++..+.. ..-+.......+|+..++++..++|.+.+.+++++||++ |.+++||+++ .+|++||+|||||++++
T Consensus 245 ~i~v~~ie~~dp~gvh~G~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nVqf~l~~~~g~~~ViEVNPR~s~s 324 (1102)
T PLN02735 245 VVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQFAVNPVDGEVMIIEMNPRVSRS 324 (1102)
T ss_pred EEEEeeEEEEcCCccccCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEEEEEEECCCCcEEEEEecCCCCCc
Confidence 7765432210 111223456667887799999999999999999999995 9999999999 58899999999999999
Q ss_pred cchhhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCc
Q 013241 276 HPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDY 355 (447)
Q Consensus 276 ~~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~ 355 (447)
+.+.+.++|+|+++.++++|+|.+++..+.++... . ...|.|..+.+.. ..|-.++-++ .....
T Consensus 325 s~l~s~atG~~~a~~~~klalG~~l~~~~~~~~~~-----------~-~a~~ep~~d~~~~-k~p~~~f~~f---~~~~~ 388 (1102)
T PLN02735 325 SALASKATGFPIAKMAAKLSVGYTLDQIPNDITLK-----------T-PASFEPSIDYVVT-KIPRFAFEKF---PGSQP 388 (1102)
T ss_pred chhhhhhhCCCHHHHHHHHHCCCChhhhccccccc-----------c-chheeecCCcEEE-EcccCCcccc---cCCCc
Confidence 99999999999999999999999986554333211 1 1346677666643 2333333232 23445
Q ss_pred ccCCCCCccceEEEEEcCCHHHHHHHHHHhhhc
Q 013241 356 VVPPSYDSLLGKLIVWAPTREKAIERMKRALND 388 (447)
Q Consensus 356 ~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~ 388 (447)
.+.+...| .|.|++.|+|++||+.|+.|.++.
T Consensus 389 ~l~~~mks-~ge~m~~gr~~~ea~~ka~~~~~~ 420 (1102)
T PLN02735 389 ILTTQMKS-VGEAMALGRTFQESFQKALRSLET 420 (1102)
T ss_pred ccceeeee-cceEEEecCCHHHHHHHHHHHhcC
Confidence 56666677 999999999999999999999864
No 25
>PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis. It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A ....
Probab=99.98 E-value=6.2e-33 Score=230.51 Aligned_cols=107 Identities=51% Similarity=0.901 Sum_probs=102.7
Q ss_pred EEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhhccEEecc
Q 013241 315 ECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGV 394 (447)
Q Consensus 315 ~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G~ 394 (447)
|||||||||.++|.|++|+|+.+.+|.+++||+|++++.|+.|+++||||+||||+||.||++|+++|.+||+++.|+|+
T Consensus 1 E~Ri~AEdP~~~F~Ps~G~i~~~~~P~g~gvRvDt~~~~G~~v~~~yDsmiaKliv~g~~R~~Ai~~l~~AL~e~~I~Gv 80 (107)
T PF02785_consen 1 EARIYAEDPANGFLPSPGRITRYSPPGGPGVRVDTGVYSGYEVSPYYDSMIAKLIVHGPDREEAIARLRRALAETVIEGV 80 (107)
T ss_dssp EEEEESBETTTTTEBSSEEESEEE-SSSTTEEEEESESTTCEE-SSSSSEEEEEEEEESSHHHHHHHHHHHHHHHEEESS
T ss_pred CcEEeecCCCCCCcCCcEEEeEEECCCCCCeeEEecCccccccCCCchhhhhhheeeccchHHHHHHHHhhcceEEEECc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHhcCCccccCCcccccccc
Q 013241 395 PTTIEYHKLILDVEDFKNGKVDTAFIP 421 (447)
Q Consensus 395 ~tn~~~~~~~l~~~~f~~g~~~t~~~~ 421 (447)
+||++||++||.+|+|++|+++|+|||
T Consensus 81 ~TNi~fl~~ll~~~~f~~g~~~T~~le 107 (107)
T PF02785_consen 81 KTNIPFLRALLAHPEFRSGTYDTGFLE 107 (107)
T ss_dssp SHSHHHHHHHHTSHHHHTT-SSTTHHH
T ss_pred cCCHHHHHHHhCCcccccCCCeeeccC
Confidence 999999999999999999999999986
No 26
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.97 E-value=2.9e-29 Score=257.64 Aligned_cols=255 Identities=18% Similarity=0.227 Sum_probs=182.3
Q ss_pred HHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcE
Q 013241 121 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNV 200 (447)
Q Consensus 121 ~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~v 200 (447)
+++.+++++++||+|+||..|++|+|+++|++.+|+.++++.+...++ -.+..++|||||++..|+++.++.++.|..
T Consensus 139 ~~l~~~~~~~g~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~--~~~~~~lvEefi~~~~E~sv~~~~~~~~~~ 216 (395)
T PRK09288 139 EELRAAVEEIGYPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGR--GGAGRVIVEEFIDFDYEITLLTVRAVDGGT 216 (395)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhhcc--ccCCCEEEEEecCCCEEEEEEEEEcCCCCE
Confidence 666677778999999999999999999999999999999987654321 013689999999965899999999877555
Q ss_pred EEEeeeeeccccccceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhh
Q 013241 201 VHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTE 280 (447)
Q Consensus 201 v~l~~r~~s~~~~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e 280 (447)
..+...+ ..+..........|+. ++++..+++.+.+.+++++||+.|++|+||++++++ +|++|+|||++++..++-
T Consensus 217 ~~~~~~~-~~~~~~~~~~~~~p~~-l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~~-~~viEinpR~~~~~~~~~ 293 (395)
T PRK09288 217 HFCAPIG-HRQEDGDYRESWQPQP-MSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGDE-VYFSEVSPRPHDTGMVTL 293 (395)
T ss_pred EEecCcc-cEEECCEEEEEECCCC-CCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCe-EEEEEecCCCCCCcceee
Confidence 5443221 1111122223345775 899999999999999999999999999999998764 999999999998644433
Q ss_pred hhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEe-cCCCCcEEEeeeecCCcccCC
Q 013241 281 MISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYL-PAGGPFVRMDSHVYPDYVVPP 359 (447)
Q Consensus 281 ~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~-~~~~~~vr~d~~~~~G~~v~~ 359 (447)
...|+|+++++++.++|.+++... ....+..+.+.++.... . ..+..+. ....+|+++. .+.. ...
T Consensus 294 ~~~g~~~~~~~~~~~lG~~~~~~~----~~~~~~~~~~~~~~~~~-~----~~i~~~~~~~~~~g~~~~--~~~k--~~~ 360 (395)
T PRK09288 294 ISQNLSEFELHARAILGLPIPDIR----LYSPAASAVILAEGESA-N----PSFDGLAEALAVPGTDVR--LFGK--PEI 360 (395)
T ss_pred eecccCHHHHHHHHHcCCCCCccc----ccCCceeEEEecccccc-c----cchhhHHHHhcCCCCEEE--EecC--CCC
Confidence 344999999999999998773222 22334444555542211 0 0111111 1123555432 2221 122
Q ss_pred CCCccceEEEEEcCCHHHHHHHHHHhhhccEEec
Q 013241 360 SYDSLLGKLIVWAPTREKAIERMKRALNDTIITG 393 (447)
Q Consensus 360 ~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G 393 (447)
..++.+|+|++.|+|.++|.+++.++++.+++.|
T Consensus 361 ~~~~~lG~v~~~g~~~~~a~~~~~~~~~~i~~~~ 394 (395)
T PRK09288 361 RGGRRMGVALATGEDVEEAREKAKEAASKVKVVG 394 (395)
T ss_pred CCCCeeEEEEeecCCHHHHHHHHHHHHhheeecc
Confidence 2346699999999999999999999999999887
No 27
>PLN02735 carbamoyl-phosphate synthase
Probab=99.97 E-value=4.5e-30 Score=290.35 Aligned_cols=252 Identities=21% Similarity=0.307 Sum_probs=200.1
Q ss_pred CCcEEEEecCcHH-----------HHHHHHHHHHcCCCeeEEEeccChhhHHHHHhcccc--------------------
Q 013241 70 RQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESV-------------------- 118 (447)
Q Consensus 70 ~~~kvLianrgei-----------a~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v-------------------- 118 (447)
..+||||++.|.+ ++.++++|+++|+.++.+....+..+++..++|+.+
T Consensus 573 ~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~pl~~e~vl~i~~~e~~d~ 652 (1102)
T PLN02735 573 NKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPDG 652 (1102)
T ss_pred CCceEEEeCccccccCcccccceeHHHHHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEEeCCHHHHHHHHHHhCCCE
Confidence 4799999999974 345899999999999988877666554444333221
Q ss_pred -----------------------------------CH-------------------------------------HHHHHH
Q 013241 119 -----------------------------------CI-------------------------------------EEAVKL 126 (447)
Q Consensus 119 -----------------------------------~i-------------------------------------~e~~~~ 126 (447)
.+ +++.++
T Consensus 653 Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~~~v~s~eea~~~ 732 (1102)
T PLN02735 653 IIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGGIARSEADALAI 732 (1102)
T ss_pred EEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEeCCHHHHHHH
Confidence 11 677778
Q ss_pred hhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeee
Q 013241 127 ADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGER 206 (447)
Q Consensus 127 ~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r 206 (447)
++++|||+||||++|+||+||++|++.+||.++++.+... +++.+++||+||++++|++|++++|++|+++..+..
T Consensus 733 a~~iGyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~----~~~~~vlVEefI~~g~Ei~V~vl~D~~G~vv~~~i~ 808 (1102)
T PLN02735 733 AKRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEV----DPERPVLVDKYLSDATEIDVDALADSEGNVVIGGIM 808 (1102)
T ss_pred HHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHh----cCCCCEEEEEecCCcEEEEEEEEECCCCCEEEecce
Confidence 8899999999999999999999999999999999987654 345689999999876999999999988887765433
Q ss_pred eeccc--cccceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcC
Q 013241 207 DCSIQ--RRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISS 284 (447)
Q Consensus 207 ~~s~~--~~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~G 284 (447)
+.... .+........|++.++++..+++.+.+.+++++|||.|++++||+++++|++||+|+|||+++++|++++++|
T Consensus 809 e~~~~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~ki~~~L~~~G~~~vqf~v~~dg~~yviEiNpR~s~t~p~~~katG 888 (1102)
T PLN02735 809 EHIEQAGVHSGDSACSLPTQTIPSSCLATIRDWTTKLAKRLNVCGLMNCQYAITPSGEVYIIEANPRASRTVPFVSKAIG 888 (1102)
T ss_pred EeeeccCccCCCccEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeeEEEEEcCCCcEEEEEEeCCCCccHHHHHHHHC
Confidence 31110 0111122345776799999999999999999999999999999999878899999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCC---CCccccccceeEEEEEEeeCCCCccccC
Q 013241 285 VDLIEEQIHVAMGGKLR---YKQEDIVLQGHSIECRINAEDPFKNFRP 329 (447)
Q Consensus 285 iDl~~~~i~~a~G~~l~---~~~~~~~~~g~ai~~ri~ae~p~~~f~p 329 (447)
+|+++.++++++|++|. +.+++. ....++.+++. |...|.+
T Consensus 889 idl~~~~~~~~~G~~l~~~~~~~~~~-~~~~~vk~~vf---~~~~~~~ 932 (1102)
T PLN02735 889 HPLAKYASLVMSGKSLKDLGFTEEVI-PAHVSVKEAVL---PFDKFQG 932 (1102)
T ss_pred CCHHHHHHHHHcCCChhhcCCCcccc-cCeEEEEeccC---ChhhCCC
Confidence 99999999999999964 333322 34567888774 4555654
No 28
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=99.97 E-value=1.7e-31 Score=222.35 Aligned_cols=107 Identities=55% Similarity=0.913 Sum_probs=105.2
Q ss_pred EEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhhccEEecc
Q 013241 315 ECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGV 394 (447)
Q Consensus 315 ~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G~ 394 (447)
|||||||||..+|.|++|+|+.+.+|.++|||+|++++.|+.|+++||||+||+|+||+||++|+++|.+||+++.|+|+
T Consensus 1 E~Ri~AEdp~~~F~P~~G~i~~~~~p~g~gvR~Dt~~~~G~~v~~~yDsmlAKliv~g~~R~~A~~rl~~aL~e~~i~Gv 80 (107)
T smart00878 1 ECRINAEDPANGFLPSPGRITRYRFPGGPGVRVDSGVYEGYEVPPYYDSMIAKLIVHGETREEAIARLRRALDEFRIEGV 80 (107)
T ss_pred CeEEEeeCCCCCcccCCCEEeEEEcCCCCCEEEEccCcCCCCcCcchhhhceEEEEEcCCHHHHHHHHHHHHHhCEEECc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHhcCCccccCCcccccccc
Q 013241 395 PTTIEYHKLILDVEDFKNGKVDTAFIP 421 (447)
Q Consensus 395 ~tn~~~~~~~l~~~~f~~g~~~t~~~~ 421 (447)
+||++||++||.+++|++|+++|+||+
T Consensus 81 ~TN~~~l~~ll~~~~f~~g~~~T~~l~ 107 (107)
T smart00878 81 KTNIPFLRALLRHPDFRAGDVDTGFLE 107 (107)
T ss_pred cCCHHHHHHHhcCHhhhcCcccccccC
Confidence 999999999999999999999999985
No 29
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.97 E-value=5.4e-29 Score=278.65 Aligned_cols=294 Identities=19% Similarity=0.286 Sum_probs=224.7
Q ss_pred CcHHHHH-HHHHHHHcCCCeeE---EEeccChhhHHHHHhccccCH---------HHHHHHhhhhCCcEEEEeCCCCCCc
Q 013241 79 RGEIAVR-VIRTAHEMGIPCVA---VYSTIDKDALHVKLADESVCI---------EEAVKLADELGFPVMIKATAGGGGR 145 (447)
Q Consensus 79 rgeia~r-i~r~~~~lGi~~va---v~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~PvVvKP~~g~Gg~ 145 (447)
..|..+. +++.++++|++... +..+.||..++..+.+.++++ +++.++.+.++||+||||.+|+||+
T Consensus 77 ~se~~v~~aa~lae~lglpg~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~~v~~~~e~~~~~~~~~~PvVVKP~~g~gS~ 156 (887)
T PRK02186 77 SSEYFIEVASEVARRLGLPAANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALRAVALDALDGLTYPVVVKPRMGSGSV 156 (887)
T ss_pred CchhhHHHHHHHHHHhCcCCCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCC
Confidence 3454443 45567778988653 445789999999999999887 6777888899999999999999999
Q ss_pred CeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccc--cccceeeEecCC
Q 013241 146 GMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ--RRNQKLLEEAPS 223 (447)
Q Consensus 146 Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~--~~~~k~~~~~P~ 223 (447)
|+++|+|.+|+.++++.+... ++..++|||||+| .|++++++.++. .+..++..+.... ..........|+
T Consensus 157 GV~~v~~~~el~~a~~~~~~~-----~~~~~lvEEfI~G-~E~sVe~i~~~g-~~~i~~i~~k~~~~~~~~ve~g~~~P~ 229 (887)
T PRK02186 157 GVRLCASVAEAAAHCAALRRA-----GTRAALVQAYVEG-DEYSVETLTVAR-GHQVLGITRKHLGPPPHFVEIGHDFPA 229 (887)
T ss_pred CeEEECCHHHHHHHHHHHHhc-----CCCcEEEeecccC-CcEEEEEEEECC-cEEEEEEEeeecCCCCCeEEeccccCC
Confidence 999999999999998876542 2578999999999 899999998754 3333322211111 111112234677
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCc-cEeEEEEEEecCCCEEEEEEeccCCCcc--chhhhhcCCCHHHHHHHHHcCCCC
Q 013241 224 PALTPELRKAMGDAAVAAAASIGYI-GVGTVEFLLDERGSFYFMEMNTRIQVEH--PVTEMISSVDLIEEQIHVAMGGKL 300 (447)
Q Consensus 224 ~~l~~~~~~~l~~~a~~i~~alg~~-G~~~vEf~~d~~G~~~~iEiNpR~~g~~--~v~e~~~GiDl~~~~i~~a~G~~l 300 (447)
+ ++++..+++.+.+.++++++|+. |++|+||+++++| +||+|||||++|+. .+++.++|+|+++++++.++|.++
T Consensus 230 ~-l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~~g-~~liEIn~R~~G~~i~~li~~a~Gvd~~~~~i~~~lG~~~ 307 (887)
T PRK02186 230 P-LSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGDT-VVIIEINPRLAGGMIPVLLEEAFGVDLLDHVIDLHLGVAA 307 (887)
T ss_pred C-CCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEECCC-EEEEEECCCCCCccHHHHHHHHHCcCHHHHHHHHhCCCCC
Confidence 6 88899999999999999999997 9999999999766 99999999999873 478889999999999999999987
Q ss_pred CCCccccccceeEEEEEEeeCCCCccccCCCCceeEEec-----CCCCcEEEeeeecCCcccCCC--CCccceEEEEEcC
Q 013241 301 RYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLP-----AGGPFVRMDSHVYPDYVVPPS--YDSLLGKLIVWAP 373 (447)
Q Consensus 301 ~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~-----~~~~~vr~d~~~~~G~~v~~~--~ds~lg~vi~~g~ 373 (447)
..... .....++.+.+ .|..|+|..+.. +..+.+++...+.+|+.+++. +.+++|+|+++|+
T Consensus 308 ~~~~~--~~~~~ai~~~~---------~~~~G~i~~i~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~g~vi~~g~ 376 (887)
T PRK02186 308 FADPT--AKRYGAIRFVL---------PARSGVLRGLLFLPDDIAARPELRFHPLKQPGDALRLEGDFRDRIAAVVCAGD 376 (887)
T ss_pred CCCCC--CCCeEEEEEEe---------cCCCceEEecccchhhcccCCeEEEEEecCCCCEecCCCCCCCccEEEEEEcC
Confidence 54321 12223333322 144677776522 234556666778899998764 3357999999999
Q ss_pred CHHHHHHHHHHhhhccEEe
Q 013241 374 TREKAIERMKRALNDTIIT 392 (447)
Q Consensus 374 ~~~eA~~~~~~al~~~~i~ 392 (447)
|++++.+++.++.+.++++
T Consensus 377 ~~~e~~~~~~~~~~~l~~~ 395 (887)
T PRK02186 377 HRDSVAAAAERAVAGLSID 395 (887)
T ss_pred CHHHHHHHHHHHHhcCEEE
Confidence 9999999999999999875
No 30
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.97 E-value=1e-28 Score=250.01 Aligned_cols=275 Identities=20% Similarity=0.279 Sum_probs=205.2
Q ss_pred EEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH--------------------------------
Q 013241 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI-------------------------------- 120 (447)
Q Consensus 73 kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i-------------------------------- 120 (447)
+|+|++.|+.+..++++++++|+.++.+... .+++...++|+.+..
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~--~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e~e~i~~~~l~~ 78 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPD--ANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFEFEHVDVEALEK 78 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCC--CCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeCcCcCCHHHHHH
Confidence 4789999999999999999999987766432 223333334332210
Q ss_pred --------------------------------------------HHHHHHhhhhCCcEEEEeCCCC-CCcCeEEECCHHH
Q 013241 121 --------------------------------------------EEAVKLADELGFPVMIKATAGG-GGRGMRLAKEPDE 155 (447)
Q Consensus 121 --------------------------------------------~e~~~~~~~ig~PvVvKP~~g~-Gg~Gv~~v~~~~e 155 (447)
+++.++++++|||+|+||..|+ ||+|+++|++.+|
T Consensus 79 l~~~g~~~~p~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~~g~~g~Gv~~v~~~~e 158 (352)
T TIGR01161 79 LEARGVKLFPSPDALAIIQDRLTQKQFLQKLGLPVPPFLVIKDEEELDAALQELGFPVVLKARTGGYDGRGQYRIRNEAD 158 (352)
T ss_pred HHhCCCeECCCHHHHHHhcCHHHHHHHHHHcCCCCCCccEeCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCEEEECCHHH
Confidence 6677778889999999999986 8999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCHHHHHHHH
Q 013241 156 FVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMG 235 (447)
Q Consensus 156 l~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~~~~~~l~ 235 (447)
+.++++.. .+..+++||||++.+|+++.++.+.+|++..+...+ ..++.+.......|+. +++++.+++.
T Consensus 159 l~~a~~~~--------~~~~~lvEe~I~~~~E~sv~~~~~~~G~~~~~~~~~-~~~~~g~~~~~~~p~~-~~~~~~~~~~ 228 (352)
T TIGR01161 159 LPQAAKEL--------GDRECIVEEFVPFERELSVIVARSADGETAFYPVVE-NIHQDGILRYVVAPAA-VPDAIQARAE 228 (352)
T ss_pred HHHHHHhc--------CCCcEEEEecCCCCeEEEEEEEEcCCCCEEEECCcc-cEEeCCEEEEEECCCC-CCHHHHHHHH
Confidence 99887753 235899999999769999999988888876653322 2333333334456775 8899999999
Q ss_pred HHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEE
Q 013241 236 DAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIE 315 (447)
Q Consensus 236 ~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~ 315 (447)
+++.+++++|||.|++++||+++++|++||+|+|||++++..++...++++.++.+++.++|.+++... ....+++
T Consensus 229 ~~a~~i~~~l~~~G~~~ve~~~~~dg~~~v~EinpR~~~sg~~~~~~~~~s~f~~~~ra~~g~~l~~~~----~~~~~~m 304 (352)
T TIGR01161 229 EIARRLMEELGYVGVLAVEMFVLPDGRLLINELAPRVHNSGHYTLDGCSTSQFEQHLRAILGLPLGSTE----LLLPSVM 304 (352)
T ss_pred HHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEecCCCCCcCcCchhhccccHHHHHHHHHcCCCCCCcc----ccCCEEE
Confidence 999999999999999999999998899999999999999877788899999999999999999886432 3445777
Q ss_pred EEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCC
Q 013241 316 CRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPT 374 (447)
Q Consensus 316 ~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~ 374 (447)
..+...+ . .....+..+. ..|++. .++|......+ ++.+|||.+.|.|
T Consensus 305 ~n~~~~~-~----~~~~~~~~~~--~~~~~~--~~~y~k~~~~~--~rk~Ghi~~~~~~ 352 (352)
T TIGR01161 305 VNLLGTE-D----DVIPLWEEIL--ALPGAK--LHWYGKAEVRP--GRKVGHVNLVGSD 352 (352)
T ss_pred EEEecCc-c----chHHHHHHHH--hCCCCE--EEECCCCCCCC--CCcceEEEeecCC
Confidence 7777643 0 0101111111 123444 45564434444 7889999998875
No 31
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.97 E-value=7.7e-29 Score=281.82 Aligned_cols=264 Identities=22% Similarity=0.346 Sum_probs=194.9
Q ss_pred HHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcE
Q 013241 121 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNV 200 (447)
Q Consensus 121 ~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~v 200 (447)
+++.++++++|||+||||+.|.||+|+++|++.+||.++++.....+ ....++||+||+|.+|+++.+++|.+|++
T Consensus 153 ~e~~~~~~~ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s----~~~~vlvEe~I~G~~Eisv~v~rd~~g~~ 228 (1066)
T PRK05294 153 EEALEVAEEIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLS----PVTEVLIEESLLGWKEYEYEVMRDKNDNC 228 (1066)
T ss_pred HHHHHHHHHcCCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhC----CCCeEEEEEcccCceEEEEEEEEcCCCCE
Confidence 67778888999999999999999999999999999999887654321 23689999999998899999999999998
Q ss_pred EEEeeeeec--cccccceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCc-cEeEEEEEEe-cCCCEEEEEEeccCCCcc
Q 013241 201 VHFGERDCS--IQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYI-GVGTVEFLLD-ERGSFYFMEMNTRIQVEH 276 (447)
Q Consensus 201 v~l~~r~~s--~~~~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~-G~~~vEf~~d-~~G~~~~iEiNpR~~g~~ 276 (447)
+.++..+.. ..-+.......+|+..++++..+++.+.+.+++++|||. |++++||+++ .+|++||+|+|||++++.
T Consensus 229 ~~~~~~e~~dp~gih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~vef~~~~~~g~~~viEiNPR~~~s~ 308 (1066)
T PRK05294 229 IIVCSIENIDPMGVHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQFALNPKDGRYIVIEMNPRVSRSS 308 (1066)
T ss_pred EEEeeeeeccccceecCCeEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceEEEEEEECCCCcEEEEEeecCCCcce
Confidence 877543211 000122345567886689999999999999999999999 9999999999 578899999999999988
Q ss_pred chhhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcc
Q 013241 277 PVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYV 356 (447)
Q Consensus 277 ~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~ 356 (447)
.+++.++|+|+.+..++.++|.++..-...+ .|. +. ..|.|.-..+.. ..| . ++.+.+.+..
T Consensus 309 ~~~s~~tG~pl~~~~~~~~lG~~l~~m~n~~--~g~---------~~-~~~~p~~~~v~~-k~p---~--~~~~~y~k~~ 370 (1066)
T PRK05294 309 ALASKATGYPIAKVAAKLAVGYTLDEIKNDI--TGK---------TP-ASFEPSLDYVVT-KIP---R--FAFEKFPGAD 370 (1066)
T ss_pred eeeeHhhCCCHHHHHHHHHcCCChHHhcCcc--cCC---------Cc-ccccccCCeEEE-Ecc---C--CccccccCCC
Confidence 8888899999999999999999874322111 111 00 123344343221 122 2 2234454433
Q ss_pred cCC--CCCccceEEEEEcCCHHHHHHHHHHhhhccEEeccc------cCHHHHHHhcCCc
Q 013241 357 VPP--SYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVP------TTIEYHKLILDVE 408 (447)
Q Consensus 357 v~~--~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G~~------tn~~~~~~~l~~~ 408 (447)
..+ .. ..+|+|++.|+|.++|+.++.|.++. ...|.. .+.+-+..-|.+|
T Consensus 371 ~~~g~~m-rk~G~v~~~g~~~e~~~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 428 (1066)
T PRK05294 371 RRLGTQM-KSVGEVMAIGRTFEESLQKALRSLEI-GVTGLDEDLFEEESLEELREELKEP 428 (1066)
T ss_pred CCcccee-cccceEEEEcCCHHHHHHHHHHhcCC-CCCCCCccccccCCHHHHHhhcCCC
Confidence 333 22 34999999999999999999999954 334432 2235566666665
No 32
>PRK07206 hypothetical protein; Provisional
Probab=99.97 E-value=2.5e-28 Score=252.43 Aligned_cols=253 Identities=16% Similarity=0.207 Sum_probs=180.2
Q ss_pred HHHHHHhhhhCC---cEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcC--CCcEEEeeccCCCceEEEEEEEe
Q 013241 121 EEAVKLADELGF---PVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLAD 195 (447)
Q Consensus 121 ~e~~~~~~~ig~---PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lvEefI~G~~ei~v~vl~d 195 (447)
+++.+++++++| |+||||..|+||+|+++|+|.+|+.++++++.... ..++ +..++|||||+| .|++++++..
T Consensus 133 ~e~~~~~~~~g~~~~P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~-~~~~~~~~~~lvEe~i~G-~E~sv~~~~~ 210 (416)
T PRK07206 133 EEAEAWLRENGLIDRPVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKA-NKLGLVNETVLVQEYLIG-TEYVVNFVSL 210 (416)
T ss_pred HHHHHHHHhcCCCCCCEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhcc-ccCCCCCCeEEEEEcccc-EEEEEEEEEE
Confidence 677777888888 99999999999999999999999999998875421 1111 368999999999 8999999964
Q ss_pred CCCcEEEEeee--eeccccccceeeEec-CCCCCCHHHHHHHHHHHHHHHHHcCCc-cEeEEEEEEecCCCEEEEEEecc
Q 013241 196 KYGNVVHFGER--DCSIQRRNQKLLEEA-PSPALTPELRKAMGDAAVAAAASIGYI-GVGTVEFLLDERGSFYFMEMNTR 271 (447)
Q Consensus 196 ~~g~vv~l~~r--~~s~~~~~~k~~~~~-P~~~l~~~~~~~l~~~a~~i~~alg~~-G~~~vEf~~d~~G~~~~iEiNpR 271 (447)
+|+++..... ..........+.... ..+ .+.+..+++.+.+.++++++|+. |++|+||+++++| +|++|||||
T Consensus 211 -~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~g-~~liEin~R 287 (416)
T PRK07206 211 -DGNHLVTEIVRYHKTSLNSGSTVYDYDEFLD-YSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTADG-PRLIEIGAR 287 (416)
T ss_pred -CCEEEEEEeEEeeecccCCCCceecccccCC-ccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCCC-CEEEEECCc
Confidence 4565443211 111111111111111 112 35677889999999999999996 9999999999877 899999999
Q ss_pred CCCc--cchhhhhcCCCHHHHHHHHHcCCCCCCCc--cccccceeEEEEEEeeCCCCccccCCCCceeEEe----cCCCC
Q 013241 272 IQVE--HPVTEMISSVDLIEEQIHVAMGGKLRYKQ--EDIVLQGHSIECRINAEDPFKNFRPGPGRITAYL----PAGGP 343 (447)
Q Consensus 272 ~~g~--~~v~e~~~GiDl~~~~i~~a~G~~l~~~~--~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~----~~~~~ 343 (447)
++|+ +.+++.++|+|+.+++++.++|.+..... ......+++....+. .|..|++..+. ....|
T Consensus 288 ~~G~~~~~~~~~~~G~d~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~G~~~~i~g~~~~~~~p 359 (416)
T PRK07206 288 LDGGLHPDVARLATGDSQLDATVESLADPDVFRETLREGYRLKAHVFNVFLI--------SPAAGVFSNVEFLEEIQKLP 359 (416)
T ss_pred cCCCCccchhhhhcCcCHHHHHHHHHhCchhhccccCCCcChhhceEEEEEe--------cCCCceEeCCccHHHHHhCC
Confidence 9986 45788999999999999999998753222 111223333222222 24567776542 11224
Q ss_pred cE-EEeeeecCCcccCCCCC--ccceEEEEEcCCHHHHHHHHHHhh
Q 013241 344 FV-RMDSHVYPDYVVPPSYD--SLLGKLIVWAPTREKAIERMKRAL 386 (447)
Q Consensus 344 ~v-r~d~~~~~G~~v~~~~d--s~lg~vi~~g~~~~eA~~~~~~al 386 (447)
++ .+...+.+|+.|.+.-| +.+|++++.++|.+++.+..+++-
T Consensus 360 ~v~~~~~~~~~G~~v~~~~d~~~~~g~v~~~~~~~~~~~~~~~~~~ 405 (416)
T PRK07206 360 SFKKSHIYVKEGDYVPQTVDLFSQPGTVYLVHKDKEQLWQDYEKIR 405 (416)
T ss_pred chhheEEecCCCCCccCceecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 43 45567889999887544 369999999999999988776654
No 33
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.97 E-value=5e-28 Score=246.94 Aligned_cols=306 Identities=14% Similarity=0.177 Sum_probs=212.5
Q ss_pred cCCcEEEEecCcHHHHHHHHHHHHcCCCeeEE-----EeccChhhHHHHHhccccCH---------HHHHHHhhhhCCcE
Q 013241 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAV-----YSTIDKDALHVKLADESVCI---------EEAVKLADELGFPV 134 (447)
Q Consensus 69 ~~~~kvLianrgeia~ri~r~~~~lGi~~vav-----~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~Pv 134 (447)
..++-|++.--.+.+..+.+.+++.|+++... ..+.||..++..|.+.+++. +++.+++++++||+
T Consensus 26 ~~id~vi~g~E~~l~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~~~~~~~ea~~~~~~~g~Pv 105 (379)
T PRK13790 26 QNVDWVVIGPEQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERKKDALTYIENCELPV 105 (379)
T ss_pred hCCCEEEECCcHHHHHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHhcCCCE
Confidence 34555666656677778888898999876532 24578888888898888877 67778888999999
Q ss_pred EEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccc-
Q 013241 135 MIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRR- 213 (447)
Q Consensus 135 VvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~- 213 (447)
||||..++||+||++|++.+|+.++++.+.... .++.++|||||+| +|+++.++.+++. .+.+ .|..+.+
T Consensus 106 VvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~----~~~~vlvEe~i~G-~E~sv~~~~~g~~-~~~~---~~~~~~~k 176 (379)
T PRK13790 106 VVKKDGLAAGKGVIIADTIEAARSAIEIMYGDE----EEGTVVFETFLEG-EEFSLMTFVNGDL-AVPF---DCIAQDHK 176 (379)
T ss_pred EEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcC----CCCeEEEEEcccC-ceEEEEEEeeCCE-EEec---cccccccc
Confidence 999999999999999999999999998765321 1358999999999 9999999988552 2222 0111111
Q ss_pred ----------cceeeEecCCCCCCHHHHHHH-HHHHHHHHHHc---CC--ccEeEEEEEEecCCCEEEEEEeccCCC-cc
Q 013241 214 ----------NQKLLEEAPSPALTPELRKAM-GDAAVAAAASI---GY--IGVGTVEFLLDERGSFYFMEMNTRIQV-EH 276 (447)
Q Consensus 214 ----------~~k~~~~~P~~~l~~~~~~~l-~~~a~~i~~al---g~--~G~~~vEf~~d~~G~~~~iEiNpR~~g-~~ 276 (447)
.......+|++.++++..+++ .+++.+++++| |+ .|+.++||+++++| +|++|+|+|+++ +.
T Consensus 177 r~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~~g-~~viEiN~R~G~pe~ 255 (379)
T PRK13790 177 RAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDG-PKVIEFNARFGDPEA 255 (379)
T ss_pred ccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-eEEEEEEcccCCCcc
Confidence 112234567766787776655 56667666666 54 69999999999877 999999999987 34
Q ss_pred chhhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeec--CC
Q 013241 277 PVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVY--PD 354 (447)
Q Consensus 277 ~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~--~G 354 (447)
.++...+|+|+++.+++.+.|.++++.+.+. .++-. +.+...+..-......|..+ +. ...+ +..++. .|
T Consensus 256 ~~~~~~~~~Dl~~~~~~~~~g~~~~~~~~~~----~~~~v-~~~s~gyp~~~~~~~~i~~~-~~-~~~~-~~~~~~~~~~ 327 (379)
T PRK13790 256 QVLLSRMESDLMQHIIDLDEGKRTEFKWKNE----SIVGV-MLASKGYPDAYEKGHKVSGF-DL-NENY-FVSGLKKQGD 327 (379)
T ss_pred eeeecccCCCHHHHHHHHHcCCCCceeEcCC----CEEEE-EEccCCCCCCCCCCCeeeec-CC-CCeE-EECCccccCC
Confidence 4555668999999999999998776554332 23222 23322221111112333333 11 1122 223222 22
Q ss_pred cccCCCCCccceEEEEEcCCHHHHHHHHHHhhhccEEecc
Q 013241 355 YVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGV 394 (447)
Q Consensus 355 ~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G~ 394 (447)
..++ . +.++..|++.|+|.+||.++++++++.+.++|.
T Consensus 328 ~~~~-~-ggRv~~v~~~g~~~~~a~~~~~~~~~~i~~~~~ 365 (379)
T PRK13790 328 TFVT-S-GGRVILAIGKGDNVQDAQRDAYEKVSQIQSDHL 365 (379)
T ss_pred eEEE-C-CCeEEEEEEecCCHHHHHHHHHHHHhcCCCCCC
Confidence 2222 2 346999999999999999999999999999884
No 34
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.96 E-value=1.1e-27 Score=271.85 Aligned_cols=262 Identities=20% Similarity=0.325 Sum_probs=193.9
Q ss_pred HHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcE
Q 013241 121 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNV 200 (447)
Q Consensus 121 ~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~v 200 (447)
+++.++++++|||+||||+.|.||+|+.+|++.+||.+++......+ ....++|||||+|.+|+++.+++|.+|++
T Consensus 153 ee~~~~~~~igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s----~~~~vLVEe~I~G~~E~sv~v~rD~~g~~ 228 (1068)
T PRK12815 153 EEALAFAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQAS----PIHQCLLEESIAGWKEIEYEVMRDRNGNC 228 (1068)
T ss_pred HHHHHHHHHcCCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcC----CCCeEEEEEccCCCeEEEEEEEEcCCCCE
Confidence 77778888999999999999999999999999999999987765431 13589999999998899999999998988
Q ss_pred EEEeeeeecccc---ccceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecC-CCEEEEEEeccCCCcc
Q 013241 201 VHFGERDCSIQR---RNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTRIQVEH 276 (447)
Q Consensus 201 v~l~~r~~s~~~---~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~-G~~~~iEiNpR~~g~~ 276 (447)
+.++..+. +.. ........+|+..++++..+++.+.+.+++++||+.|.+++||+++++ |++|++|||||++++.
T Consensus 229 ~~~~~~e~-~~p~gi~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~vef~l~~~~g~~~ViEINPR~~~s~ 307 (1068)
T PRK12815 229 ITVCNMEN-IDPVGIHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQFALDPKSKQYYLIEVNPRVSRSS 307 (1068)
T ss_pred EEEEecee-cccccccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCCcEEEEEEecCcccch
Confidence 87643221 111 112234457876689999999999999999999999999999999964 7899999999999998
Q ss_pred chhhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcc
Q 013241 277 PVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYV 356 (447)
Q Consensus 277 ~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~ 356 (447)
.++..++|+|+.+..+++++|.+++....++ .|... ..|.|....+ .+..| +++.+.+.+..
T Consensus 308 ~l~~~atG~pl~~~~~~~alG~~l~ei~~~i--~g~~~----------a~~ep~~d~~-~~k~p-----~~~f~~y~~~~ 369 (1068)
T PRK12815 308 ALASKATGYPIAKIAAKLAVGYTLNELKNPV--TGLTY----------ASFEPALDYV-VVKFP-----RWPFDKFGYAD 369 (1068)
T ss_pred hhhhHhhCCcHHHHHHHHHcCCChHHhcCCc--cCCcc----------cccCCccceE-EEEec-----cCccccccCcc
Confidence 9998999999999999999999875332222 22110 1233544443 11222 22334444322
Q ss_pred cCCCCCcc---ceEEEEEcCCHHHHHHHHHHhhhccEEeccc-------cCHHHHHHhcCCc
Q 013241 357 VPPSYDSL---LGKLIVWAPTREKAIERMKRALNDTIITGVP-------TTIEYHKLILDVE 408 (447)
Q Consensus 357 v~~~~ds~---lg~vi~~g~~~~eA~~~~~~al~~~~i~G~~-------tn~~~~~~~l~~~ 408 (447)
..+ ++. .|+|++.|+|.++|+.++.++++. ...|.. .+.+-+...|.+|
T Consensus 370 ~~~--g~kmks~G~v~~ig~~~eea~~ka~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ 428 (1068)
T PRK12815 370 RTL--GTQMKATGEVMAIGRNFESAFQKALRSLEI-KRNGLSLPIELSGKSDEELLQDLRHP 428 (1068)
T ss_pred ccc--cceecccceEEEecCCHHHHHHHHHHhhcC-CCCCCCCccccccCCHHHHHHHhccC
Confidence 222 333 499999999999999999999964 333432 1345566666665
No 35
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.96 E-value=2.7e-27 Score=244.74 Aligned_cols=318 Identities=19% Similarity=0.209 Sum_probs=218.7
Q ss_pred ccCCcEEEEecCcHHHHHHHHHHHHcCCCee-----EEEeccChhhHHHHHhccccCH---------HHHHHHhhhhCCc
Q 013241 68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCV-----AVYSTIDKDALHVKLADESVCI---------EEAVKLADELGFP 133 (447)
Q Consensus 68 ~~~~~kvLianrgeia~ri~r~~~~lGi~~v-----av~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~P 133 (447)
+..+.-|++--=-+....+++.++++|+++. +...+.||..++..+.+.++++ +++.+++++++||
T Consensus 60 ~~~id~vvvg~E~~lv~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~~~~~~e~~~~~~~~g~P 139 (434)
T PLN02257 60 KWGVGLVVVGPEAPLVAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFTDPAAAKKYIKEQGAP 139 (434)
T ss_pred HcCCCEEEECCchHHHHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcCCC
Confidence 3345544443333445588999999999864 2335679999999999999887 7777888899999
Q ss_pred EEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcC--CCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeee-e-c
Q 013241 134 VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD-C-S 209 (447)
Q Consensus 134 vVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~-~-s 209 (447)
+||||..+++|+||+++++.+|+.+++..+... ..|+ ...++|||||+| +|++++++.|+. .++.+.... . .
T Consensus 140 vVVKp~~~~~GkGV~iv~~~~el~~a~~~~~~~--~~fg~~~~~vlIEefi~G-~E~Sv~~~~dG~-~~~pl~~~~dhkr 215 (434)
T PLN02257 140 IVVKADGLAAGKGVVVAMTLEEAYEAVDSMLVK--GAFGSAGSEVVVEEFLDG-EEASFFALVDGE-NAIPLESAQDHKR 215 (434)
T ss_pred EEEEcCCCCCCCCEEEECCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCCC-CEEEEEEEECCC-cEEEEEeeeeccc
Confidence 999999999999999999999999999887532 2343 368999999999 799999998855 555553211 0 0
Q ss_pred ccc-----ccceeeEecCCCCCCHHHHHHHH-HHHH---HHHHHcC--CccEeEEEEEEe-cCCCEEEEEEeccCCCc-c
Q 013241 210 IQR-----RNQKLLEEAPSPALTPELRKAMG-DAAV---AAAASIG--YIGVGTVEFLLD-ERGSFYFMEMNTRIQVE-H 276 (447)
Q Consensus 210 ~~~-----~~~k~~~~~P~~~l~~~~~~~l~-~~a~---~i~~alg--~~G~~~vEf~~d-~~G~~~~iEiNpR~~g~-~ 276 (447)
+.. +.......+|++.+++++.+++. +.+. +.+++.| |.|+.++||+++ ++|++||||+|+|+|.. +
T Consensus 216 ~~d~d~g~ntggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g~p~vLE~N~R~Gdpe~ 295 (434)
T PLN02257 216 VGDGDTGPNTGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKLLEYNVRFGDPEC 295 (434)
T ss_pred ccCCCCCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCCCEEEEEEECCCCCCch
Confidence 111 01234456788778988888754 4443 4444555 559999999998 67889999999999974 6
Q ss_pred chhhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCccccCCCC-ceeEEecCC--CCcEEE-eeeec
Q 013241 277 PVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPG-RITAYLPAG--GPFVRM-DSHVY 352 (447)
Q Consensus 277 ~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g-~i~~~~~~~--~~~vr~-d~~~~ 352 (447)
.++...++.||++.+++++.|+.... ++.++..+..|.+.+...+..- +..| .|..+.... .+++.+ ..+..
T Consensus 296 ~~~l~~l~~Dl~~~~~~~~~g~l~~~---~~~~~~~~av~vv~a~~gYp~~-~~~g~~i~~~~~~~~~~~~~~v~~a~~~ 371 (434)
T PLN02257 296 QVLMMRLESDLAQVLLAACKGELSGV---SLTWSPDSAMVVVMASNGYPGS-YKKGTVIKNLDEAEAVAPGVKVFHAGTA 371 (434)
T ss_pred heEehhhcCCHHHHHHHHHcCCCCCC---CceECCCceEEEEEcCCCCCCC-CCCCCEeeCCccccccCCCCEEEECCce
Confidence 66666789999999999999963322 1223323333445554322211 2223 343332111 134332 22222
Q ss_pred --CCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhhccEEecc
Q 013241 353 --PDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGV 394 (447)
Q Consensus 353 --~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G~ 394 (447)
.+..+-+. +.++..|+++|+|.++|.++++++++.+.++|.
T Consensus 372 ~~~~~~~~t~-ggRvl~v~~~g~~~~~A~~~ay~~~~~i~~~~~ 414 (434)
T PLN02257 372 LDSDGNVVAA-GGRVLGVTAKGKDIAEARARAYDAVDQIDWPGG 414 (434)
T ss_pred EccCCEEEEC-CCeEEEEEEecCCHHHHHHHHHHHHhcCCCCCC
Confidence 12233333 346999999999999999999999999999884
No 36
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.96 E-value=3.5e-27 Score=244.19 Aligned_cols=313 Identities=19% Similarity=0.202 Sum_probs=208.5
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeE-----EEeccChhhHHHHHhccccCH---------HHHHHHhhhhCCcEEE
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVA-----VYSTIDKDALHVKLADESVCI---------EEAVKLADELGFPVMI 136 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~va-----v~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~PvVv 136 (447)
++-|++..-.+....+...++++|+++.. ...+.||..++..+.+.++++ +++.+++++++||+||
T Consensus 63 id~vi~~~e~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~Vv 142 (420)
T PRK00885 63 IDLTVVGPEAPLVAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYETFTDAEEALAYLDEKGAPIVV 142 (420)
T ss_pred CCEEEECCchHHHHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcCCCEEE
Confidence 44444433333455778889999998652 335689999999999999887 7777888899999999
Q ss_pred EeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcC--CCcEEEeeccCCCceEEEEEEEeCCCcEEEEeee-eec-cc-
Q 013241 137 KATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGER-DCS-IQ- 211 (447)
Q Consensus 137 KP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r-~~s-~~- 211 (447)
||..++||+|+++|++.+|+.++++.+.... .|+ ...++|||||+| +|+++.++.|+. .+..+... +.. ..
T Consensus 143 KP~~~~gs~Gv~~v~~~~el~~~~~~~~~~~--~~~~~~~~vlvEe~i~G-~E~sv~~~~~g~-~~~~~~~~~~~~~~~~ 218 (420)
T PRK00885 143 KADGLAAGKGVVVAMTLEEAKAAVDDMLAGN--KFGDAGARVVIEEFLDG-EEASFFAFVDGE-NVLPLPTAQDHKRAGD 218 (420)
T ss_pred EeCCCCCCCcEEEeCCHHHHHHHHHHHhhcc--cccCCCCeEEEEEccCC-cEEEEEEEECCC-ceEeceeeEeeeeccc
Confidence 9999999999999999999999998876432 122 358999999999 999999999754 55444321 110 00
Q ss_pred ----cccceeeEecCCCCCCHHHHHHHHH-HHHHH---HHHcC--CccEeEEEEEEecCCCEEEEEEeccCCCc-cchhh
Q 013241 212 ----RRNQKLLEEAPSPALTPELRKAMGD-AAVAA---AASIG--YIGVGTVEFLLDERGSFYFMEMNTRIQVE-HPVTE 280 (447)
Q Consensus 212 ----~~~~k~~~~~P~~~l~~~~~~~l~~-~a~~i---~~alg--~~G~~~vEf~~d~~G~~~~iEiNpR~~g~-~~v~e 280 (447)
.........+|++.++++..+++.+ ++.++ ++++| |.|++++||+++++| +|++|+|||+++. +....
T Consensus 219 ~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~~g-~~viEin~R~g~~~~~~~~ 297 (420)
T PRK00885 219 GDTGPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITKDG-PKVIEFNARFGDPETQVVL 297 (420)
T ss_pred CCCCCCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEECCC-cEEEEEecccCCccHHhhh
Confidence 0111223456776688877766654 54444 44545 569999999999877 8999999999874 44445
Q ss_pred hhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCccccCCCCc-eeEEecCCCCcEEEeeeec-CCcccC
Q 013241 281 MISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGR-ITAYLPAGGPFVRMDSHVY-PDYVVP 358 (447)
Q Consensus 281 ~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~-i~~~~~~~~~~vr~d~~~~-~G~~v~ 358 (447)
..++.|+++.+++++.|...+... .. .+..++.. +.+...+. ..|..|. |..+.......+.. .++. .+..+.
T Consensus 298 ~~~~~d~~~~~~~~~~g~~~~~~~-~~-~~~~a~~~-~~~~~gy~-~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~ 372 (420)
T PRK00885 298 PRLKSDLVELLLAAADGKLDEVEL-EW-DDRAAVGV-VLAAKGYP-GDYRKGDVITGLEAADADKVFH-AGTKLEDGKLV 372 (420)
T ss_pred hhccCCHHHHHHHHHcCCCCCCCc-eE-CCCcEEEE-EEeCCCCC-CCCCCCCEeecccccCCCEEEE-CceeccCCeEE
Confidence 566789999999999997654321 11 13344433 33321110 1122232 22221111101111 1111 111222
Q ss_pred CCCCccceEEEEEcCCHHHHHHHHHHhhhccEEecc
Q 013241 359 PSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGV 394 (447)
Q Consensus 359 ~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G~ 394 (447)
.. +.+++.|++.|+|++||.++++++++.+++.|.
T Consensus 373 ~~-g~R~~~vi~~g~t~~eA~~~a~~~~~~i~~~~~ 407 (420)
T PRK00885 373 TN-GGRVLCVTALGDTLEEAQKRAYAALDKIDFDGG 407 (420)
T ss_pred Ee-CCEEEEEEEecCCHHHHHHHHHHHHhccCCCCC
Confidence 22 245999999999999999999999999999873
No 37
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=99.96 E-value=2.1e-27 Score=225.05 Aligned_cols=309 Identities=18% Similarity=0.220 Sum_probs=234.6
Q ss_pred ccccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH-------------------------
Q 013241 66 KVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI------------------------- 120 (447)
Q Consensus 66 ~~~~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i------------------------- 120 (447)
++...-+|||+++.||.+..++-.|+++|+.++++....|..+|++....+.+..
T Consensus 7 ~~~~~a~kvmLLGSGELGKEvaIe~QRLG~eViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~rekPd~IVpEiEAI 86 (394)
T COG0027 7 PLRPQATKVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDYIVPEIEAI 86 (394)
T ss_pred CCCCCCeEEEEecCCccchHHHHHHHhcCCEEEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHhhCCCeeeehhhhh
Confidence 4555568999999999999999999999999999999999999988776666655
Q ss_pred ----------------------------------------------------HHHHHHhhhhCCcEEEEeCCCCCCcCeE
Q 013241 121 ----------------------------------------------------EEAVKLADELGFPVMIKATAGGGGRGMR 148 (447)
Q Consensus 121 ----------------------------------------------------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~ 148 (447)
++..+.++++|||+++||..+++|+|-.
T Consensus 87 ~td~L~elE~~G~~VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~~e~~~a~~~iGfPcvvKPvMSSSGkGqs 166 (394)
T COG0027 87 ATDALVELEEEGYTVVPNARATKLTMNREGIRRLAAEELGLPTSKYRFADSLEELRAAVEKIGFPCVVKPVMSSSGKGQS 166 (394)
T ss_pred hHHHHHHHHhCCceEccchHHHHhhhcHHHHHHHHHHHhCCCCccccccccHHHHHHHHHHcCCCeecccccccCCCCce
Confidence 8888899999999999999999999999
Q ss_pred EECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCH
Q 013241 149 LAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTP 228 (447)
Q Consensus 149 ~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~ 228 (447)
+|.++++++++|+.+...++. +++++++|+||+-..|+++-.++..+|.-. ++.-.-..|........|-|.. +++
T Consensus 167 vv~~~e~ve~AW~~A~~g~R~--~~~RVIVE~fv~fd~EiTlLtvr~~~~~~~-Fc~PIGHrq~dgdY~ESWQP~~-mS~ 242 (394)
T COG0027 167 VVRSPEDVEKAWEYAQQGGRG--GSGRVIVEEFVKFDFEITLLTVRAVDGTGS-FCAPIGHRQEDGDYRESWQPQE-MSE 242 (394)
T ss_pred eecCHHHHHHHHHHHHhcCCC--CCCcEEEEEEecceEEEEEEEEEEecCCCC-cCCCcccccCCCChhcccCccc-cCH
Confidence 999999999999998866542 468999999999756666666655444321 2111112233333344566776 999
Q ss_pred HHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCCCCCccccc
Q 013241 229 ELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIV 308 (447)
Q Consensus 229 ~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~ 308 (447)
...++...+|.++.++||-.|+++||+++..| ++||-|+.||+....-+|-...+++-++.+++..+|.|++.. .
T Consensus 243 ~al~~A~~IA~~vt~aLGG~GiFGVElfv~gD-eV~FsEVSPRPHDTGmVTLiSq~lsEF~LH~RAiLGLPi~~i----~ 317 (394)
T COG0027 243 AALEEAQSIAKRVTDALGGRGLFGVELFVKGD-EVIFSEVSPRPHDTGMVTLISQDLSEFALHVRAILGLPIPEI----R 317 (394)
T ss_pred HHHHHHHHHHHHHHHhhcCccceeEEEEEeCC-EEEEeecCCCCCCCceEEEEeccchHHHHHHHHHhCCCccce----e
Confidence 99999999999999999999999999999875 499999999999887777677799999999999999998622 2
Q ss_pred cceeEEEEEEeeCCCCccccCCCCcee-EEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhh
Q 013241 309 LQGHSIECRINAEDPFKNFRPGPGRIT-AYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALN 387 (447)
Q Consensus 309 ~~g~ai~~ri~ae~p~~~f~p~~g~i~-~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~ 387 (447)
.-+.+....|+++... ..|....+. .+..| +..+|+.. ++ .+ +-.+++|..+++++|-++|+++++++.+
T Consensus 318 ~~~P~AS~vI~~~~~~--~~~~f~~l~~AL~~p-~t~vRlFG--KP--~~--~~~RRmGVALA~a~~Ve~Are~A~~aa~ 388 (394)
T COG0027 318 QISPAASAVILAQETS--QAPTFDGLAEALGVP-DTQVRLFG--KP--EA--DGGRRLGVALATAESVEEARERARKAAS 388 (394)
T ss_pred eecccccceeeccccc--cCCchhhHHHHhcCC-CceEEEec--CC--cc--cCCceeeEEEecCccHHHHHHHHHHHHh
Confidence 2333333444443221 223333332 23332 34466421 11 11 2246799999999999999999999999
Q ss_pred ccEEe
Q 013241 388 DTIIT 392 (447)
Q Consensus 388 ~~~i~ 392 (447)
.+.|.
T Consensus 389 ~i~v~ 393 (394)
T COG0027 389 AIEVK 393 (394)
T ss_pred heecC
Confidence 88775
No 38
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.96 E-value=1.1e-26 Score=239.92 Aligned_cols=300 Identities=15% Similarity=0.192 Sum_probs=207.2
Q ss_pred HHHHHHHHHcCCCeeEE-----EeccChhhHHHHHhccccCH---------HHHHHHhhhhCCcEEEEeCCCCCCcCeEE
Q 013241 84 VRVIRTAHEMGIPCVAV-----YSTIDKDALHVKLADESVCI---------EEAVKLADELGFPVMIKATAGGGGRGMRL 149 (447)
Q Consensus 84 ~ri~r~~~~lGi~~vav-----~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~ 149 (447)
..++..++++|+++... ..+.||..++..|.+.+++. +++.+++++++||+||||..+++|+||++
T Consensus 82 ~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~ea~~~~~~~~~PvVVKp~~~~~gkGV~v 161 (426)
T PRK13789 82 AGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEYSSSLSYLESEMLPIVIKADGLAAGKGVTV 161 (426)
T ss_pred HHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEeeCCHHHHHHHHHhcCCCEEEEeCCCCCCCcEEE
Confidence 35778889999987522 24569999999999998887 77888888999999999999999999999
Q ss_pred ECCHHHHHHHHHHHHHHHHHhcC--CCcEEEeeccCCCceEEEEEEEeCCCcEEEEee-eee-ccccc-----cceeeEe
Q 013241 150 AKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE-RDC-SIQRR-----NQKLLEE 220 (447)
Q Consensus 150 v~~~~el~~~~~~~~~~~~~~~~--~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~-r~~-s~~~~-----~~k~~~~ 220 (447)
|++.+|+.++++.+.... .|+ +..++|||||+| +|+++.++.|+. .++.+.. ++. ..... .......
T Consensus 162 v~~~eel~~a~~~~~~~~--~~g~~~~~vlIEEfl~G-~E~Sv~~~~dg~-~~~~lp~~~d~k~~~d~d~g~~tggmg~~ 237 (426)
T PRK13789 162 ATEKKMAKRALKEIFKDK--KFGQSGNQVVIEEFMEG-QEASIFAISDGD-SYFLLPAAQDHKRAFDGDQGPNTGGMGAY 237 (426)
T ss_pred ECCHHHHHHHHHHHHhhc--cccCCCCeEEEEECcCC-eEEEEEEEECCC-EEEEccceEecccccCCCCCCCCCCceEE
Confidence 999999999999876432 243 248999999999 999999998764 4444432 111 01111 1223557
Q ss_pred cCCCCCCHHHHHHHHH-HHHHHH---HHcC--CccEeEEEEEEecCCCEEEEEEeccCCCc-cchhhhhcCCCHHHHHHH
Q 013241 221 APSPALTPELRKAMGD-AAVAAA---ASIG--YIGVGTVEFLLDERGSFYFMEMNTRIQVE-HPVTEMISSVDLIEEQIH 293 (447)
Q Consensus 221 ~P~~~l~~~~~~~l~~-~a~~i~---~alg--~~G~~~vEf~~d~~G~~~~iEiNpR~~g~-~~v~e~~~GiDl~~~~i~ 293 (447)
+|++.+++++.+++.+ ++.+++ ++.| |+|+.++||+++++|++|++|+|+|++.. ....-.....||++.+++
T Consensus 238 ~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~~g~~~vlE~n~R~Gdpe~~~ll~~l~~dl~~~~~~ 317 (426)
T PRK13789 238 CPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPEGEPKVVEFNCRFGDPETQCVLAMLDGDLLELLYA 317 (426)
T ss_pred eeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcCCCCEEEEEEecCCCCcHhhhhhccCCCCHHHHHHH
Confidence 8888778888888764 444544 4556 78999999999988899999999999762 333333446899999999
Q ss_pred HHcCCCCCCCcccccc-ceeEEEEEEeeCCCCccccCCCCc-eeEEecCCCCcEEEe-eeec-CCcccCCCCCccceEEE
Q 013241 294 VAMGGKLRYKQEDIVL-QGHSIECRINAEDPFKNFRPGPGR-ITAYLPAGGPFVRMD-SHVY-PDYVVPPSYDSLLGKLI 369 (447)
Q Consensus 294 ~a~G~~l~~~~~~~~~-~g~ai~~ri~ae~p~~~f~p~~g~-i~~~~~~~~~~vr~d-~~~~-~G~~v~~~~ds~lg~vi 369 (447)
.+.|+..... +.+ .+.++ +.+.+...+... +..|. |. +.....+++.+. .+.. .+..+... +.++..|+
T Consensus 318 ~~~g~l~~~~---~~~~~~~s~-~vv~a~~gyp~~-~~~g~~i~-~~~~~~~~~~if~a~~~~~~~~~~t~-ggRvl~v~ 390 (426)
T PRK13789 318 ASTGKIKVVN---LKLKQGAAA-VVVLAAQGYPDS-YEKNIPLN-LPETSGQNVVLFHAGTKKKDGKVFSS-GGRILGIV 390 (426)
T ss_pred HHcCCCCCCC---ceecCCceE-EEEECcCCcCCC-cCCCCEEe-ccCcCCCCcEEEEeeeeeeCCEEEeC-CCeEEEEE
Confidence 9999533211 222 23333 334443322221 22343 43 322112344432 1221 22233333 34588888
Q ss_pred EEcCCHHHHHHHHHHhhhccEEecc
Q 013241 370 VWAPTREKAIERMKRALNDTIITGV 394 (447)
Q Consensus 370 ~~g~~~~eA~~~~~~al~~~~i~G~ 394 (447)
+.|+|.++|+++++++++.+.++|.
T Consensus 391 ~~g~~~~~A~~~ay~~~~~i~~~~~ 415 (426)
T PRK13789 391 AQGKDLKDSVDQAYSFLEKIQAPKT 415 (426)
T ss_pred EecCCHHHHHHHHHHHHhcCCCCCC
Confidence 9999999999999999999999873
No 39
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.96 E-value=4.9e-27 Score=232.51 Aligned_cols=299 Identities=20% Similarity=0.318 Sum_probs=231.0
Q ss_pred CccccCCCCCCccccCC--cEEEEecCcHHHHHHHHHHHHcCCCee-----EEEeccChhhHHHHHhccccCH-------
Q 013241 55 LKRRCGGGGALKVTCRQ--EKILVANRGEIAVRVIRTAHEMGIPCV-----AVYSTIDKDALHVKLADESVCI------- 120 (447)
Q Consensus 55 ~~~~~~~g~~~~~~~~~--~kvLianrgeia~ri~r~~~~lGi~~v-----av~~~~dk~~~~~~lad~~v~i------- 120 (447)
++.+.++|||+++++.. ++-. .|+++|++++ ++..+.||..++.+|.+.++++
T Consensus 72 Dailp~~ggqt~Ln~~~~l~e~g-------------~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P~~~~~~ 138 (400)
T COG0458 72 DAILPTLGGQTALNAALELKEKG-------------VLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVPSRIAHS 138 (400)
T ss_pred ceeecccCCcchhhHHHHHHHhc-------------chhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCCcccccc
Confidence 45556777777777642 1111 1334566655 4456678888888887777655
Q ss_pred -HHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCc
Q 013241 121 -EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGN 199 (447)
Q Consensus 121 -~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~ 199 (447)
+++.+..+.+|||+||||..+.||.|..+++|.+||.+........+ ....+++||+|.|..|++..+++|.+++
T Consensus 139 ~~e~~~~~~~ig~PvIVrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s----~~~~vl~eesi~G~ke~e~ev~rd~~~n 214 (400)
T COG0458 139 VEEADEIADEIGYPVIVKPSFGLGGSGGGIAYNEEELEEIIEEGLRAS----PVEEVLIEESIIGWKEFEYEVVRDGKDN 214 (400)
T ss_pred HHHHhhhHhhcCCCEEEecCcCCCCCceeEEeCHHHHHHHHHhccccC----ccccceeeeeecCceEEEEEEEEeCCCC
Confidence 78888999999999999999999999999999999999888766543 3468999999999999999999999999
Q ss_pred EEEEeeeee--ccccccceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecC-CCEEEEEEeccCCCcc
Q 013241 200 VVHFGERDC--SIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTRIQVEH 276 (447)
Q Consensus 200 vv~l~~r~~--s~~~~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~-G~~~~iEiNpR~~g~~ 276 (447)
++.....+. ....+....+..+|++.+++...+.++..+.++++++|..|.++++|.++++ |++||+|||||++++.
T Consensus 215 ~ivvc~men~dp~gvhtgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvNpRvSrss 294 (400)
T COG0458 215 CIVVCNMENLDPMGVHTGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRVSRSS 294 (400)
T ss_pred EEEEEeCCccccccccccceeeeccccccccHHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCceEEEEEecCCcCcch
Confidence 988744321 1223345567788999999999999999999999999999999999999965 6999999999999999
Q ss_pred chhhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcc
Q 013241 277 PVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYV 356 (447)
Q Consensus 277 ~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~ 356 (447)
.+.+.++|..+.+....+|.|..++....++...+++ .|.|+.+.+..-. |-.+ ++......++
T Consensus 295 aLaskAtgypia~vaakla~g~~l~Ei~n~it~~t~a------------~fePsldyvv~k~-pr~~---f~kf~~~~~~ 358 (400)
T COG0458 295 ALASKATGYPIAKVAAKLAVGYTLDEIRNDITGRTPA------------SFEPSLDYVVTKI-PRFD---FEKFPGADRR 358 (400)
T ss_pred hhhhhccCChHHHHHHHhhcccCchhhcCcccccccc------------ccCCccceeeeec-CCCC---cccccccccc
Confidence 9999999999999999999998886555454433322 4667766553321 1111 1122234456
Q ss_pred cCCCCCccceEEEEEcCCHHHHHHHHHHhhh
Q 013241 357 VPPSYDSLLGKLIVWAPTREKAIERMKRALN 387 (447)
Q Consensus 357 v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~ 387 (447)
+.+.+.+ .|.|++.|++++||++|+.+.|+
T Consensus 359 l~~~mks-~gevm~igr~f~eal~ka~~~l~ 388 (400)
T COG0458 359 LGTQMKS-VGEVMAIGRTFEEALQKALRSLE 388 (400)
T ss_pred eeeeeec-cceEEEecchHHHHHHHHHHhhc
Confidence 6677777 99999999999999999999986
No 40
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.95 E-value=6.3e-26 Score=235.03 Aligned_cols=310 Identities=18% Similarity=0.230 Sum_probs=205.3
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCee-----EEEeccChhhHHHHHhccccCH---------HHHHHHhhhhCCc-E
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCV-----AVYSTIDKDALHVKLADESVCI---------EEAVKLADELGFP-V 134 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~v-----av~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~P-v 134 (447)
.++-++...-......+++.++++|++++ ++..+.||..++..+.+.++++ +++.+++++++|| +
T Consensus 64 ~id~vi~~~e~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~~~~~~g~P~~ 143 (423)
T TIGR00877 64 KIDLAVIGPEAPLVLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFTDPEEALSYIQEKGAPAI 143 (423)
T ss_pred CCCEEEECCchHHHHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhcCCCeE
Confidence 34444443333345667888999998854 2335689999999999998887 7788888999999 9
Q ss_pred EEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcC--CCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeecccc
Q 013241 135 MIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQR 212 (447)
Q Consensus 135 VvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~ 212 (447)
|+||..|+||+|++++++.+|+.+++..+.... |+ +..++|||||+| .|+++.++.|+. .+..+....- ..+
T Consensus 144 VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~---~g~~~~~~lvEe~i~G-~E~sv~~~~dg~-~~~~~~~~~~-~~~ 217 (423)
T TIGR00877 144 VVKADGLAAGKGVIVAKTNEEAIKAVEEILEQK---FGDAGERVVIEEFLDG-EEVSLLAFVDGK-TVIPMPPAQD-HKR 217 (423)
T ss_pred EEEECCCCCCCCEEEECCHHHHHHHHHHHHHHh---cCCCCCeEEEEECccC-ceEEEEEEEcCC-eEEeceeeee-eee
Confidence 999999999999999999999999998876543 32 357999999999 899999998764 4444432210 111
Q ss_pred c--------cceeeEecCCCCCCHHHHHHH----HHHHHHHHHHcC--CccEeEEEEEEecCCCEEEEEEeccCCCc-cc
Q 013241 213 R--------NQKLLEEAPSPALTPELRKAM----GDAAVAAAASIG--YIGVGTVEFLLDERGSFYFMEMNTRIQVE-HP 277 (447)
Q Consensus 213 ~--------~~k~~~~~P~~~l~~~~~~~l----~~~a~~i~~alg--~~G~~~vEf~~d~~G~~~~iEiNpR~~g~-~~ 277 (447)
. .......+|++.++++...++ .+.+.+.+.++| |.|++|+||+++++| +|++|+|||+++. +.
T Consensus 218 ~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~~g-~~viEin~R~g~~~~~ 296 (423)
T TIGR00877 218 ALEGDKGPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTKEG-PKVLEFNCRFGDPETQ 296 (423)
T ss_pred cccCCCCCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEECCC-cEEEEEEccCCCccce
Confidence 0 011223466655776655443 333444555554 679999999999888 9999999999875 32
Q ss_pred hhhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEe---cCCCCcEEEe-eeec-
Q 013241 278 VTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYL---PAGGPFVRMD-SHVY- 352 (447)
Q Consensus 278 v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~---~~~~~~vr~d-~~~~- 352 (447)
.....+++|+.+.+++++.|...+... .. .++.++...+.+. ++....++...+. ....+++.+. ..+.
T Consensus 297 ~~~~~~~~dl~~~~~~~~~g~l~~~~~-~~-~~~~a~~~~~~~~----~yp~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 370 (423)
T TIGR00877 297 AVLPLLKSDLLEVCLAAVEGKLDEVEL-RF-DNRAAVTVVLASE----GYPGDYRKGDPITGEPLIEAEGVKVFHAGTKQ 370 (423)
T ss_pred eEecccCCCHHHHHHHHHcCCCCCCCc-eE-CCCceEEEEEecC----CcCCCCCCCCEeeCCcccccCCCEEEECceec
Confidence 233456799999999999996222111 11 2333443333322 1211123222221 1111333322 1111
Q ss_pred CCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhhccEEec
Q 013241 353 PDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITG 393 (447)
Q Consensus 353 ~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G 393 (447)
....+... ..+++.||+.|+|+++|.+++.++++.+++.|
T Consensus 371 ~~~~~~~~-~~r~~~vi~~g~~~~~a~~~~~~~~~~i~~~~ 410 (423)
T TIGR00877 371 DNGKLVTS-GGRVLAVTALGKSLEEARERAYEAVEYIKFEG 410 (423)
T ss_pred cCCEEEEc-CCEEEEEEEecCCHHHHHHHHHHHHhcCCCCC
Confidence 11112122 34699999999999999999999999999987
No 41
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.94 E-value=5.3e-25 Score=228.03 Aligned_cols=311 Identities=15% Similarity=0.139 Sum_probs=209.7
Q ss_pred cCCcEEEEecCcHHHHHHHHHHHHcCCCee-----EEEeccChhhHHHHHhccccCH----------HHHHHHhhhhCCc
Q 013241 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCV-----AVYSTIDKDALHVKLADESVCI----------EEAVKLADELGFP 133 (447)
Q Consensus 69 ~~~~kvLianrgeia~ri~r~~~~lGi~~v-----av~~~~dk~~~~~~lad~~v~i----------~e~~~~~~~ig~P 133 (447)
..++=|++..-.+.+..+...+++.|+++. +...+.||..++..|.+.+++. +++...+.+++||
T Consensus 64 ~~id~Vi~~~d~~l~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~~~~~~~e~~~~~~~~~~P 143 (435)
T PRK06395 64 NNVDIVFVGPDPVLATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNACFSEKDAARDYITSMKD 143 (435)
T ss_pred hCCCEEEECCChHHHHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCcccceeCChHHHHHHHHhhCCC
Confidence 346667776666788888888889999875 2346789999999999888775 4555556678999
Q ss_pred EEEEeCCCCCCcCeEEECCH-HHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeee-eec-c
Q 013241 134 VMIKATAGGGGRGMRLAKEP-DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGER-DCS-I 210 (447)
Q Consensus 134 vVvKP~~g~Gg~Gv~~v~~~-~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r-~~s-~ 210 (447)
+||||.+++||+||++|++. +++.+++..+.... . .+..++|||||+| .|++++++.|+. .+..++.. +.. .
T Consensus 144 vVVKP~~~sggkGV~v~~~~~~~~~ea~~~~~~~~--~-~~~~viIEEfl~G-~E~Svd~~~dg~-~~~~l~~~~d~~r~ 218 (435)
T PRK06395 144 VAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEIL--D-RDGVVLIEKKMTG-EEFSLQAFSDGK-HLSFMPIVQDYKRA 218 (435)
T ss_pred EEEEeCCCCCCCCeEEecCchhhHHHHHHHHHHHh--C-CCCcEEEEeecCC-ceEEEEEEEcCC-eEEEecccceeeec
Confidence 99999999999999999643 33444444433321 1 1367999999999 899999999765 44444221 110 0
Q ss_pred -----ccccceeeEec----CCCCCCHHHHHHHHHHHHHHHHHcC-----CccEeEEEEEEecCCCEEEEEEeccCCC-c
Q 013241 211 -----QRRNQKLLEEA----PSPALTPELRKAMGDAAVAAAASIG-----YIGVGTVEFLLDERGSFYFMEMNTRIQV-E 275 (447)
Q Consensus 211 -----~~~~~k~~~~~----P~~~l~~~~~~~l~~~a~~i~~alg-----~~G~~~vEf~~d~~G~~~~iEiNpR~~g-~ 275 (447)
..+.......+ |.+.++++..+++.+.+.+++++|+ |+|+.++||+++++| +|+||+|+|++. |
T Consensus 219 ~~~d~gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~lt~~g-p~ViE~n~R~gdpe 297 (435)
T PRK06395 219 YEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMDTPNG-VKVIEINARFADPE 297 (435)
T ss_pred ccCCCCCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEeCCC-cEEEEEeCCCCCcc
Confidence 00111111222 4455899999999999999999999 678889999999877 999999999997 3
Q ss_pred cchhhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEE-eeeec--
Q 013241 276 HPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRM-DSHVY-- 352 (447)
Q Consensus 276 ~~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~-d~~~~-- 352 (447)
..++......|+++.+++++.| ++.. ... ....+..+++.+...+. ..|..|.|........+++.+ ..++.
T Consensus 298 ~~~il~~l~~d~~~~~~~~~~g-~l~~-~~~--~~~~~~~~~~l~~~gYp-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 372 (435)
T PRK06395 298 GINVLYLLKSDFVETLHQIYSG-NLNG-SIK--FERKATVLKYIVPPGYG-ENPSPGRIKIDKTIFDSNSDVYYASVSGT 372 (435)
T ss_pred HHhhhhhcccCHHHHHHHHhcC-CCCC-Cce--ecCCCEEEEEEecCCCC-CCCCCCceeccccccCCCCEEEEeecccc
Confidence 5444456689999999999999 4432 111 12222334444433221 124456554221111233332 22222
Q ss_pred CCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhhccEEec
Q 013241 353 PDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITG 393 (447)
Q Consensus 353 ~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G 393 (447)
.+. +... +.+++.|++.|+|+++|.++++++++.+. .|
T Consensus 373 ~~~-~~s~-ggRv~~vv~~g~~~~eA~~~a~~~~~~I~-~~ 410 (435)
T PRK06395 373 LND-VKTS-GSRSLAIIAKGDSIPEASEKVDSDLNAVH-GS 410 (435)
T ss_pred CCC-eEEC-CCcEEEEEEEcCCHHHHHHHHHHHHhccC-CC
Confidence 122 3333 34599999999999999999999999988 44
No 42
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.94 E-value=5.8e-25 Score=249.43 Aligned_cols=286 Identities=21% Similarity=0.335 Sum_probs=212.3
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeE-----EEeccChhhHHHHHhccccCH---------HHHHHHhhhhCCcEEE
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVA-----VYSTIDKDALHVKLADESVCI---------EEAVKLADELGFPVMI 136 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~va-----v~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~PvVv 136 (447)
++-|++.-.|+.+..+++.+.++|++... +..+.||..+...+.+.+++. +++.++++++|||+||
T Consensus 630 idgVI~~~gg~~~~~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~v~s~ee~~~~~~~igyPvIV 709 (1050)
T TIGR01369 630 PEGVIVQFGGQTPLNLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSVEEAVEFASEIGYPVLV 709 (1050)
T ss_pred CCEEEEccCcHhHHHHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHhcCCCEEE
Confidence 45566666788889999999999988653 335689999999999998877 7888889999999999
Q ss_pred EeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeee--cccccc
Q 013241 137 KATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC--SIQRRN 214 (447)
Q Consensus 137 KP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~--s~~~~~ 214 (447)
||+++.||+||.+|++.+||.++++++...+ .+.+++|||||+|+.|++++++.|+ |+++..+..+. ....+.
T Consensus 710 KP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s----~~~~vlVeefI~~G~E~~Vd~l~d~-g~v~i~~i~e~~~~~gv~s 784 (1050)
T TIGR01369 710 RPSYVLGGRAMEIVYNEEELRRYLEEAVEVS----PEHPVLIDKYLEDAVEVDVDAVSDG-EEVLIPGIMEHIEEAGVHS 784 (1050)
T ss_pred EECCCCCCCCeEEECCHHHHHHHHHHHHHhC----CCCCEEEeecCCCCeEEEEEEEEeC-CEEEEEEEEEeecccCCcC
Confidence 9999999999999999999999999876432 3468999999995599999999985 45554432221 100111
Q ss_pred ceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHH
Q 013241 215 QKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHV 294 (447)
Q Consensus 215 ~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~ 294 (447)
.......|+..++++..+++.+++.+++++||+.|++++||++++ |++|+||+|||++++.++++.++|+|+++.++++
T Consensus 785 Gds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~~-~~~yvIEvNpR~s~t~p~vs~atGi~l~~~~~~~ 863 (1050)
T TIGR01369 785 GDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVKD-GEVYVIEVNPRASRTVPFVSKATGVPLIKLATRV 863 (1050)
T ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEEC-CeEEEEEEeCCCCchHHHHHHHHCCCHHHHHHHH
Confidence 122334576668999999999999999999999999999999986 5699999999999988999999999999999999
Q ss_pred HcCCCCCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCC
Q 013241 295 AMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPT 374 (447)
Q Consensus 295 a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~ 374 (447)
++|.++....... .|.+..+ .+..|-.+.-++. .....+.|...| .|.++..|+|
T Consensus 864 ~lG~~l~~~~~~~--------------------~~~~~~~-~vK~p~f~~~~~~---~~d~~lg~emks-tge~~~~g~~ 918 (1050)
T TIGR01369 864 MLGKKLEELGVGK--------------------EKEPKYV-AVKEPVFSFSKLA---GVDPVLGPEMKS-TGEVMGIGRD 918 (1050)
T ss_pred HcCCCcccccccc--------------------CCCCCeE-EEEeccCChhhcC---CCCCcCCceeEe-cCceEecCCC
Confidence 9999875321000 0111111 1111111111110 111123344445 7888888888
Q ss_pred HHHHHHHHHHhhh
Q 013241 375 REKAIERMKRALN 387 (447)
Q Consensus 375 ~~eA~~~~~~al~ 387 (447)
.++|+.++..+..
T Consensus 919 ~~~a~~ka~~~~~ 931 (1050)
T TIGR01369 919 LAEAFLKAQLSSG 931 (1050)
T ss_pred HHHHHHHHHHhCC
Confidence 8888888877753
No 43
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.94 E-value=2.2e-24 Score=244.84 Aligned_cols=285 Identities=20% Similarity=0.317 Sum_probs=213.6
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeE-----EEeccChhhHHHHHhccccCH---------HHHHHHhhhhCCcEE
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVA-----VYSTIDKDALHVKLADESVCI---------EEAVKLADELGFPVM 135 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~va-----v~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~PvV 135 (447)
.++-|++.-.+..+..+++.++++|+++.. +..+.||..+...+.+.+++. +++.++++++|||+|
T Consensus 630 ~~dgVI~~~g~~~~~~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~~~~s~ee~~~~~~~igyPvV 709 (1068)
T PRK12815 630 NIKGVIVQFGGQTAINLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATDEEEAFAFAKRIGYPVL 709 (1068)
T ss_pred CCCEEEEecCcHHHHHHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeEEeCCHHHHHHHHHhcCCCEE
Confidence 356666666778888999999999988653 346689999999999998877 788888999999999
Q ss_pred EEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccc--
Q 013241 136 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRR-- 213 (447)
Q Consensus 136 vKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~-- 213 (447)
|||+++.||+||++|++.+||..+++.+. ..+.+++|||||+| .|++++++.|+. .++..+..+. +...
T Consensus 710 VKP~~~~Gg~gv~iv~~~eeL~~~l~~~~------s~~~~vlIeefI~G-~E~~Vd~i~dg~-~v~i~~i~e~-~e~~gv 780 (1068)
T PRK12815 710 IRPSYVIGGQGMAVVYDEPALEAYLAENA------SQLYPILIDQFIDG-KEYEVDAISDGE-DVTIPGIIEH-IEQAGV 780 (1068)
T ss_pred EEeCCCCCCCCEEEECCHHHHHHHHHHhh------cCCCCEEEEEeecC-ceEEEEEEEcCC-ceEEeeEEEE-eeccCC
Confidence 99999999999999999999999988761 13578999999999 899999999865 3333222221 1111
Q ss_pred -cceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHH
Q 013241 214 -NQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQI 292 (447)
Q Consensus 214 -~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i 292 (447)
........|+..++++..+++.+.+.+++++||+.|++++||++++ |++|++|+|||+++..++++.++|+|+++.++
T Consensus 781 ~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~~-~~~yviEiNpR~s~t~~~~skatGv~l~~~~~ 859 (1068)
T PRK12815 781 HSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLAN-DEIYVLEVNPRASRTVPFVSKATGVPLAKLAT 859 (1068)
T ss_pred cCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEEC-CcEEEEEEeCCCCccHHHHHHHHCCCHHHHHH
Confidence 1112233455568999999999999999999999999999999986 45999999999999888888999999999999
Q ss_pred HHHcCCCCCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEc
Q 013241 293 HVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWA 372 (447)
Q Consensus 293 ~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g 372 (447)
++++|+++..... . ..+.|..+.+.. ..|-.|+-++. ..+..+.|..-| .|.++..|
T Consensus 860 ~~~lG~~l~~~~~----~--------------~~~~~~~~~~~v-k~p~f~f~~~~---~~~~~lg~~m~s-tGe~~~~~ 916 (1068)
T PRK12815 860 KVLLGKSLAELGY----P--------------NGLWPGSPFIHV-KMPVFSYLKYP---GVDNTLGPEMKS-TGEVMGID 916 (1068)
T ss_pred HHHcCCChhhccc----c--------------cccCCCCCeEEE-EeccCChhHcc---cCCCccCCcceE-cceeEecc
Confidence 9999998742210 0 012233333321 22222222210 112224455556 89999999
Q ss_pred CCHHHHHHHHHHhhh
Q 013241 373 PTREKAIERMKRALN 387 (447)
Q Consensus 373 ~~~~eA~~~~~~al~ 387 (447)
.|.++|+.|+..+..
T Consensus 917 ~~~~~a~~k~~~~~~ 931 (1068)
T PRK12815 917 KDLEEALYKGYEASD 931 (1068)
T ss_pred CCHHHHHHHHHHhcC
Confidence 999999999888753
No 44
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.94 E-value=1.2e-24 Score=247.72 Aligned_cols=285 Identities=20% Similarity=0.327 Sum_probs=211.2
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCee-----EEEeccChhhHHHHHhccccCH---------HHHHHHhhhhCCcEEE
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCV-----AVYSTIDKDALHVKLADESVCI---------EEAVKLADELGFPVMI 136 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~v-----av~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~PvVv 136 (447)
++-|++.-.|+.++.+++.++++|+++. ++..+.||..+...+.+.++++ +++.++++++|||+||
T Consensus 630 ~dgVi~~~g~~~~~~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~~~s~ee~~~~~~~igyPvvV 709 (1066)
T PRK05294 630 PKGVIVQFGGQTPLKLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATSVEEALEVAEEIGYPVLV 709 (1066)
T ss_pred CCEEEEEeCchhHHHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEEECCHHHHHHHHHhcCCCeEE
Confidence 4556766788999999999999999864 3345689999999999999887 7788888999999999
Q ss_pred EeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeee--ecccccc
Q 013241 137 KATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD--CSIQRRN 214 (447)
Q Consensus 137 KP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~--~s~~~~~ 214 (447)
||++++||+|+.+|++.+||..+++.+...+ .+.+++|||||+|.+|+++++++|+. .++..+..+ ....-+.
T Consensus 710 KP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s----~~~~vlIEefI~G~~E~sV~~v~dg~-~v~i~~i~e~i~~~gv~~ 784 (1066)
T PRK05294 710 RPSYVLGGRAMEIVYDEEELERYMREAVKVS----PDHPVLIDKFLEGAIEVDVDAICDGE-DVLIGGIMEHIEEAGVHS 784 (1066)
T ss_pred EeCCCCCCCcEEEECCHHHHHHHHHHHHhhC----CCCcEEEEecCCCCEEEEEEEEecCC-eEEEeeeEEeeeeccccC
Confidence 9999999999999999999999998765432 34789999999995599999998865 333322211 0000011
Q ss_pred ceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHH
Q 013241 215 QKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHV 294 (447)
Q Consensus 215 ~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~ 294 (447)
.......|+..++++..+++.+.+.+++++||+.|++++||++++ |++|++|+|||+++..++++.++|+|+++..+++
T Consensus 785 Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~~-~~~yViEiNpR~s~t~~~~s~atGi~~~~~~~~~ 863 (1066)
T PRK05294 785 GDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVKD-DEVYVIEVNPRASRTVPFVSKATGVPLAKIAARV 863 (1066)
T ss_pred CCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEEC-CeEEEEEEecCCCccHHHHHHHhCccHHHHHHHH
Confidence 122333465568999999999999999999999999999999985 5699999999999888998999999999999999
Q ss_pred HcCCCCCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCC
Q 013241 295 AMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPT 374 (447)
Q Consensus 295 a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~ 374 (447)
++|.++..... . . .+.| +.+ .+..|-.+.-++. .....+.|...| .|.++..|.|
T Consensus 864 ~lG~~l~~~~~--~-~---------------~~~~--~~~-~vk~p~fs~~~~~---~~~~~lg~~m~s-tge~~~~~~~ 918 (1066)
T PRK05294 864 MLGKKLAELGY--T-K---------------GLIP--PYV-AVKEAVFPFNKFP---GVDPLLGPEMKS-TGEVMGIDRT 918 (1066)
T ss_pred HcCCChhhcCC--C-c---------------cCCC--Cce-EEEeccCChhhcc---CCCCccCceeee-cCceeecCCC
Confidence 99998753210 0 0 0112 111 1111111111110 111223444555 7889999999
Q ss_pred HHHHHHHHHHhh
Q 013241 375 REKAIERMKRAL 386 (447)
Q Consensus 375 ~~eA~~~~~~al 386 (447)
.+||+.++..+.
T Consensus 919 ~~~a~~k~~~~~ 930 (1066)
T PRK05294 919 FGEAFAKAQLAA 930 (1066)
T ss_pred HHHHHHHHHHhc
Confidence 999998887775
No 45
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.94 E-value=7.7e-26 Score=223.55 Aligned_cols=217 Identities=19% Similarity=0.262 Sum_probs=160.7
Q ss_pred eeccccccccCCcccccccccccccCCCCccccCCCCCCccccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccCh
Q 013241 27 LRSSQCSFMVGSRTVNFPRQVVAGVGGKLKRRCGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (447)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk 106 (447)
+...+++.++++++|||+|+ ++ .++ .++.++... .+.++++|||++.+....+.
T Consensus 69 ge~~~i~~~le~~gip~~Gs----~~------~a~--~l~~DK~~~--------------k~~l~~~gIptp~~~~~~~~ 122 (296)
T PRK14569 69 GENGRVSALLEMLEIKHTSS----SM------KSS--VITMDKMIS--------------KEILMHHRMPTPMAKFLTDK 122 (296)
T ss_pred CCChHHHHHHHHcCCCeeCC----CH------HHH--HHHHCHHHH--------------HHHHHHCCCCCCCeEEEchh
Confidence 45688999999999999998 33 122 334343332 34477899999976655432
Q ss_pred hhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCc
Q 013241 107 DALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPR 186 (447)
Q Consensus 107 ~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ 186 (447)
. ...+.++||+||||+.|++|.|+++|++.+||..+++.+.. .+.++|||||+| +
T Consensus 123 --------------~---~~~~~~~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~-------~~~~lvEefI~G-~ 177 (296)
T PRK14569 123 --------------L---VAEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASK-------YGEVMIEQWVTG-K 177 (296)
T ss_pred --------------h---hhHhhcCCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHh-------cCCEEEEccccc-E
Confidence 1 12357899999999999999999999999999999887532 257999999999 9
Q ss_pred eEEEEEEEeCCCcEEEEeee--eecc-ccccceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCE
Q 013241 187 HIEFQVLADKYGNVVHFGER--DCSI-QRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSF 263 (447)
Q Consensus 187 ei~v~vl~d~~g~vv~l~~r--~~s~-~~~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~ 263 (447)
|+++.+++++....+.+... .... ..+..+.....|+. ++++..+++.+.+.+++++||++|++++||+++++|++
T Consensus 178 E~tv~vl~~~~~~~~~i~~~~~~~~~~~k~~~~~~~~~P~~-l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~g~~ 256 (296)
T PRK14569 178 EITVAIVNDEVYSSVWIEPQNEFYDYESKYSGKSIYHSPSG-LCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDDRGNF 256 (296)
T ss_pred EEEEEEECCcCcceEEEecCCCcCChhhccCCCcEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCE
Confidence 99999997643222222111 1111 11123344456776 88889999999999999999999999999999988999
Q ss_pred EEEEEeccCCCc----cchhhhhcCCCHHHHHHHHH
Q 013241 264 YFMEMNTRIQVE----HPVTEMISSVDLIEEQIHVA 295 (447)
Q Consensus 264 ~~iEiNpR~~g~----~~v~e~~~GiDl~~~~i~~a 295 (447)
||+|||||++.. .+......|+|+.+++.++.
T Consensus 257 ~vlEIN~~Pg~t~~s~~~~~~~~~G~~~~~li~~ii 292 (296)
T PRK14569 257 YIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRII 292 (296)
T ss_pred EEEEeeCCCCCCCcCHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999853 34455577999888876654
No 46
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.93 E-value=5.8e-25 Score=225.97 Aligned_cols=222 Identities=17% Similarity=0.197 Sum_probs=168.3
Q ss_pred cEEEEecCcHHHHHHHHHHHHcCCCeeE-----EEeccChhhHHHHHhccccCH-----------HHHHHHhhh--hCCc
Q 013241 72 EKILVANRGEIAVRVIRTAHEMGIPCVA-----VYSTIDKDALHVKLADESVCI-----------EEAVKLADE--LGFP 133 (447)
Q Consensus 72 ~kvLianrgeia~ri~r~~~~lGi~~va-----v~~~~dk~~~~~~lad~~v~i-----------~e~~~~~~~--ig~P 133 (447)
+-+.+.-.|.++ ..|+.+||+... +..+.||..++..+.+.++++ +++.+.++. +|||
T Consensus 108 ~~~fl~~DG~iQ----~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~~eel~~~~~~~~IGyP 183 (493)
T PRK06524 108 KACFVMFDEETE----ALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDSYDELSALAHGAGLGDD 183 (493)
T ss_pred ceEEecCCHHHH----HHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCCHHHHHHHHHhccCCCc
Confidence 444555566544 556778988642 235678888888888887776 344445554 9999
Q ss_pred EEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEe------eee
Q 013241 134 VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG------ERD 207 (447)
Q Consensus 134 vVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~------~r~ 207 (447)
+||||+.|++|+|+++|++.+|+..+++.+ ++...++||+||.| +|++|+++.+.+|.++... .++
T Consensus 184 vVVKP~~GGSS~GV~~Vkn~eELe~a~~~~-------~~~~~viVEe~I~G-rEitVev~vd~dG~Vv~~~~~e~vg~~E 255 (493)
T PRK06524 184 LVVQTPYGDSGSTTFFVRGQRDWDKYAGGI-------VGQPEIKVMKRIRN-VEVCIEACVTRHGTVIGPAMTSLVGYPE 255 (493)
T ss_pred EEEEECCCCCCcCEEEeCCHHHHHHHHHHh-------cCCCCEEEEeccCc-EEEEEEEEEeCCCCEEeccccccccceE
Confidence 999999999999999999999999877654 23467999999998 9999999999888765421 112
Q ss_pred eccccccceeeEecCCCCCCHHHHHHHHHHHHHHHHHc---CCccEeEEEEEEec-CCCEEEEEEeccCCCccchhhhhc
Q 013241 208 CSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASI---GYIGVGTVEFLLDE-RGSFYFMEMNTRIQVEHPVTEMIS 283 (447)
Q Consensus 208 ~s~~~~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~al---g~~G~~~vEf~~d~-~G~~~~iEiNpR~~g~~~v~e~~~ 283 (447)
....+......+.+|+. +++++.+++.+.|.+++++| ||.|+++|||++++ +|++||+|||||++|+++++++++
T Consensus 256 i~~yr~G~~~~~i~PA~-L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEINPR~~G~tpmt~~~s 334 (493)
T PRK06524 256 LTPYRGGWCGNDIWPGA-LPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVNPRLSGASPMTNLTT 334 (493)
T ss_pred EEEccCCeEEEEEccCC-CCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEeCCcccccccchhhh
Confidence 22112222223567886 99999999999999999998 89999999999994 588999999999999999887744
Q ss_pred ----CCCHHHHHHHHHcCCCCCCCccc
Q 013241 284 ----SVDLIEEQIHVAMGGKLRYKQED 306 (447)
Q Consensus 284 ----GiDl~~~~i~~a~G~~l~~~~~~ 306 (447)
+.+++..+++..+|.|..+.-+.
T Consensus 335 ~Agad~p~fllh~~a~~~~p~~~~~~~ 361 (493)
T PRK06524 335 EAYADMPLFLFHLLEYMDVDYELDIEE 361 (493)
T ss_pred ccCCChhHHHHHHHHHhCCCceecHHH
Confidence 44555666778889888655433
No 47
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=99.93 E-value=9.1e-24 Score=220.71 Aligned_cols=300 Identities=18% Similarity=0.128 Sum_probs=196.8
Q ss_pred HHHHHHHHcCCCeeE-----EEeccChhhHHHHHhccccCH----------HHHHHHhhhhCCcEEEEeCCCCCCcCeEE
Q 013241 85 RVIRTAHEMGIPCVA-----VYSTIDKDALHVKLADESVCI----------EEAVKLADELGFPVMIKATAGGGGRGMRL 149 (447)
Q Consensus 85 ri~r~~~~lGi~~va-----v~~~~dk~~~~~~lad~~v~i----------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~ 149 (447)
.++..++++|+++.. ...+.||..++..|.+.+++. +++.++++.. +|+||||..++||+||++
T Consensus 84 glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~~ea~~~~~~~-~PvVVKP~~~aggkGV~i 162 (486)
T PRK05784 84 GVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYKVFYDVEEAAKFIEYG-GSVAIKPARQAGGKGVKV 162 (486)
T ss_pred HHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccceEeCCHHHHHHHHhhc-CCEEEeeCCCCCCCCEEE
Confidence 788899999998642 235688998888899888874 5666666554 699999999999999999
Q ss_pred ECCHHH-----HHHHHHHHHHHHH---HhcC--CCcEEEeeccCCCceEEEEEEEeCCCcEEEEe-eeeec-cccc----
Q 013241 150 AKEPDE-----FVKLLQQAKSEAA---AAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG-ERDCS-IQRR---- 213 (447)
Q Consensus 150 v~~~~e-----l~~~~~~~~~~~~---~~~~--~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~-~r~~s-~~~~---- 213 (447)
|++.++ +.+++.++..+.. ..|+ +..++|||||+| .|++|+++.|+. .++.+. .++.. +...
T Consensus 163 v~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~G-~E~SV~al~dG~-~~~~l~~~qd~k~~~~~d~gp 240 (486)
T PRK05784 163 IADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVDG-VEYTLQVLTDGE-TVIPLPLAQDYPHAYEDGIGP 240 (486)
T ss_pred ECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccCC-eEEEEEEEECCC-eEEEeeeeEeecceecCCCCC
Confidence 999873 4455533333221 2344 368999999999 899999998754 444332 22211 1110
Q ss_pred -cceeeEecC----CCCCCHHHHHHHHHHHHHHHHHc----C--CccEeEEEEEEe-cCCCEEEEEEeccCCCc-c-chh
Q 013241 214 -NQKLLEEAP----SPALTPELRKAMGDAAVAAAASI----G--YIGVGTVEFLLD-ERGSFYFMEMNTRIQVE-H-PVT 279 (447)
Q Consensus 214 -~~k~~~~~P----~~~l~~~~~~~l~~~a~~i~~al----g--~~G~~~vEf~~d-~~G~~~~iEiNpR~~g~-~-~v~ 279 (447)
.......+| .|.++++..+++.+++.+.+++| | |+|+.|+||+++ ++| +++||+|+|+++. . .+.
T Consensus 241 ntGgmg~~~p~~~~~P~~~~~~~~~~~~~v~~~l~al~~~~g~~~~G~l~~elmlt~~~G-P~vIE~n~R~Gdpe~~~ll 319 (486)
T PRK05784 241 ETGGMGSISGPGELLPFINEEEYEEAVEIVKRTIDAIYKETGERYVGVISGQMMLTELWG-PTVIEYYSRFGDPEASNII 319 (486)
T ss_pred CCCCCcccCCccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEecCCC-cEEEEEecccCCchHHHHH
Confidence 111222356 56577777777767777666555 3 359999999999 877 9999999999973 3 344
Q ss_pred hhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCccc-cCCCCceeEEecC--CCCc--EEEeeeec-C
Q 013241 280 EMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNF-RPGPGRITAYLPA--GGPF--VRMDSHVY-P 353 (447)
Q Consensus 280 e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f-~p~~g~i~~~~~~--~~~~--vr~d~~~~-~ 353 (447)
.. ++.|+++.+++++.|+--.. ++.++..+..|.+.+...+..- .|..|......+. ..++ |.. .++. .
T Consensus 320 p~-l~~dl~~~~~~~~~g~l~~~---~~~~~~~~~~~vv~as~gYp~~~~~~~g~~i~~~~~~~~~~~~~v~~-ag~~~~ 394 (486)
T PRK05784 320 PR-IESDFGELFELAATGKLSKA---KIKFNEEPSVVKAIAPLGYPLSRDLASGRRIVVDLDKIKEEGCLVFF-GSVELE 394 (486)
T ss_pred Hh-ccCCHHHHHHHHHcCCCCCC---CeeecCCceEEEEECCCCCCCcccCCCCCEEECCccccccCCCEEEE-CCceee
Confidence 44 56699999999999962211 1222222234556654432211 1344544332211 1123 322 2221 2
Q ss_pred CcccCCCCCccceEEEEEcCCHHHHHHHHHHhhhcc-EEecc
Q 013241 354 DYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDT-IITGV 394 (447)
Q Consensus 354 G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~-~i~G~ 394 (447)
+..+-+. +.++..|++.|+|.++|+++++++++.+ .++|.
T Consensus 395 ~~~~~t~-ggRvl~v~~~~~~l~~A~~~ay~~~~~i~~~~~~ 435 (486)
T PRK05784 395 GGQLITK-GSRALEIVAIGKDFEEAYEKLERCISYVSSDTKL 435 (486)
T ss_pred CCEEEEc-CCCeEEEEEEeCCHHHHHHHHHHHHhhccCCCCC
Confidence 2233333 3459999999999999999999999999 78773
No 48
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=99.93 E-value=1.7e-23 Score=205.04 Aligned_cols=290 Identities=20% Similarity=0.277 Sum_probs=224.3
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH------------------------------
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI------------------------------ 120 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i------------------------------ 120 (447)
+++|-|++.|..+..++.++++||+.+.......| ++....++..+..
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~--~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~~aL 78 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDAD--APAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPAEAL 78 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCC--CchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCCHHHH
Confidence 36789999999999999999999999876653332 2333333222211
Q ss_pred ---------------------------------------------HHHHHHhhhhCCcEEEEeCCCC-CCcCeEEECCHH
Q 013241 121 ---------------------------------------------EEAVKLADELGFPVMIKATAGG-GGRGMRLAKEPD 154 (447)
Q Consensus 121 ---------------------------------------------~e~~~~~~~ig~PvVvKP~~g~-Gg~Gv~~v~~~~ 154 (447)
+++..+++++|+|+|+|.+.|| -|+|.+++++.+
T Consensus 79 ~~l~~~~~v~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~~el~~~~~~~g~p~VlKtr~gGYDGkGQ~~i~~~~ 158 (375)
T COG0026 79 EKLAASVKVFPSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSAEELDAAAADLGFPAVLKTRRGGYDGKGQWRIRSDA 158 (375)
T ss_pred HHHHhhcCcCCCHHHHHHHhhHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcCCceEEEeccccccCCCeEEeeCcc
Confidence 7888899999999999998877 799999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCHHHHHHH
Q 013241 155 EFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAM 234 (447)
Q Consensus 155 el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~~~~~~l 234 (447)
++......... ....++|+|++-.+|+++-+.++.+|++..++..+ .+++.+......+|+. +++++.++.
T Consensus 159 ~~~~~~~~~~~-------~~~~vlE~fV~F~~EiSvi~aR~~~G~~~~yP~~e-N~h~~gIl~~siaPa~-i~~~~~~~A 229 (375)
T COG0026 159 DLELRAAGLAE-------GGVPVLEEFVPFEREISVIVARSNDGEVAFYPVAE-NVHRNGILRTSIAPAR-IPDDLQAQA 229 (375)
T ss_pred cchhhHhhhhc-------cCceeEEeecccceEEEEEEEEcCCCCEEEecccc-eeeecCEEEEEEecCc-CCHHHHHHH
Confidence 88875543321 13349999999989999999999999998876544 5566666666778885 999999999
Q ss_pred HHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEE
Q 013241 235 GDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSI 314 (447)
Q Consensus 235 ~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai 314 (447)
++++.++++.|+|.|++.|||+++.||++++.|+.||+..+.++|...+.++.++.++|..+|.|++... ....++
T Consensus 230 ~~~a~~i~~~L~yvGVl~vE~Fv~~dg~llvNEiAPRvHNSGH~T~~gc~~SQFEqHlRAv~glPLg~~~----~~~p~v 305 (375)
T COG0026 230 EEMAKKIAEELDYVGVLAVEFFVTPDGELLVNEIAPRVHNSGHWTIDGCETSQFEQHLRAVLGLPLGSTT----LLSPSV 305 (375)
T ss_pred HHHHHHHHHHcCceEEEEEEEEEECCCcEEEeeccCCCCCccccchhhccccHHHHHHHHHhCCCCCCcc----ccCceE
Confidence 9999999999999999999999999999999999999999988888899999999999999999996532 456778
Q ss_pred EEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhh
Q 013241 315 ECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALN 387 (447)
Q Consensus 315 ~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~ 387 (447)
+..+...+... .....+. .-|+.+ .|+|...+..+ ++.+|||-+.+.|.+++.++......
T Consensus 306 MvNlLG~~~~~------~~~~~~l--~~p~~~--lH~YGK~e~R~--gRKmGHvn~~~~~~~~~~~~~~~l~~ 366 (375)
T COG0026 306 MVNLLGDDVPP------DDVKAVL--ALPGAH--LHWYGKAEARP--GRKMGHVNVLGSDSDELEQLAALLPA 366 (375)
T ss_pred EEEecCCCCch------hhhHHHH--hCCCCE--EEEecCccCCC--CCeeeeEEeecCCHHHHHHHHHhhhh
Confidence 88777543211 1111121 223444 35665556666 68899999999997777766555443
No 49
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.93 E-value=5.2e-25 Score=222.98 Aligned_cols=228 Identities=18% Similarity=0.210 Sum_probs=162.0
Q ss_pred eeccccccccCCcccccccccccccCCCCccccCCCCCCccccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccCh
Q 013241 27 LRSSQCSFMVGSRTVNFPRQVVAGVGGKLKRRCGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (447)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk 106 (447)
+....++.+|++++|||.|+ .+ .+. +++.++.+. .+.++++|||++.+......
T Consensus 100 GEdg~iqglle~~giPy~Gs----~~------~as--al~~DK~~t--------------K~~l~~~GIpt~p~~~~~~~ 153 (364)
T PRK14570 100 GEDGAIQGFLKVMDIPCVGA----GI------LGS--AISINKYFC--------------KLLLKSFNIPLVPFIGFRKY 153 (364)
T ss_pred CCcCHHHHHHHHcCCCccCC----CH------HHH--HHHHCHHHH--------------HHHHHHcCCCCCCEEEEecc
Confidence 45678999999999999999 32 111 344444333 34466789999876544221
Q ss_pred hhHHHHHhccccCHHHHHH-HhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCC
Q 013241 107 DALHVKLADESVCIEEAVK-LADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNP 185 (447)
Q Consensus 107 ~~~~~~lad~~v~i~e~~~-~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~ 185 (447)
.. ....+++.+ ..+.+|||+||||+.+++|.|+.+|++.+||..+++.+... +..++|||||+|
T Consensus 154 ~~--------~~~~~~~~~~~~~~lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~------~~~vlVEefI~G- 218 (364)
T PRK14570 154 DY--------FLDKEGIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKY------DLTVVIEKFIEA- 218 (364)
T ss_pred cc--------ccchHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhC------CCCEEEECCcCC-
Confidence 00 000033433 34678999999999999999999999999999999887642 367999999998
Q ss_pred ceEEEEEEEeCCCcEEEEeeeee---ccccc--------cceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEE
Q 013241 186 RHIEFQVLADKYGNVVHFGERDC---SIQRR--------NQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVE 254 (447)
Q Consensus 186 ~ei~v~vl~d~~g~vv~l~~r~~---s~~~~--------~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vE 254 (447)
+|++|.++++....+...++... .+..+ ........|+. +++++.+++.+.|.+++++||++|+++||
T Consensus 219 rEi~v~Vlg~~~~~v~~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~-l~~e~~~~i~~~A~~~~~aLg~~G~~RvD 297 (364)
T PRK14570 219 REIECSVIGNEQIKIFTPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAH-LDTKHLLDIKEYAFLTYKNLELRGMARID 297 (364)
T ss_pred EEEEEEEECCCCceEeeeEEEEeCCCCccCHHHhcCCCCCCceEEECCCC-CCHHHHHHHHHHHHHHHHHhCCcceEEEE
Confidence 99999999876544444433211 01111 11123456776 99999999999999999999999999999
Q ss_pred EEEec-CCCEEEEEEeccCCCcc----chhhhhcCCCHHHH---HHHHHc
Q 013241 255 FLLDE-RGSFYFMEMNTRIQVEH----PVTEMISSVDLIEE---QIHVAM 296 (447)
Q Consensus 255 f~~d~-~G~~~~iEiNpR~~g~~----~v~e~~~GiDl~~~---~i~~a~ 296 (447)
|++++ +|++||+|+|++|+-.. |..-...|+++.+. +++.++
T Consensus 298 f~l~~~~g~~yvlEiNt~PG~t~~S~~p~~~~~~G~~~~~li~~li~~a~ 347 (364)
T PRK14570 298 FLIEKDTGLIYLNEINTIPGFTDISMFAKMCEHDGLQYKSLVDNLIDLAF 347 (364)
T ss_pred EEEECCCCcEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99995 58999999999998642 23334568876555 444444
No 50
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.92 E-value=1.5e-24 Score=217.90 Aligned_cols=222 Identities=22% Similarity=0.232 Sum_probs=161.0
Q ss_pred eccccccccCCcccccccccccccCCCCccccCCCCCCccccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChh
Q 013241 28 RSSQCSFMVGSRTVNFPRQVVAGVGGKLKRRCGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKD 107 (447)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~ 107 (447)
....++.+++.++|||.|+ .+ .++ +++.+|.. ..+.++++|||++.........
T Consensus 95 edg~iq~lle~~gipy~G~----~~------~a~--~l~~DK~~--------------~k~~l~~~GIp~p~~~~~~~~~ 148 (333)
T PRK01966 95 EDGTIQGLLELLGIPYVGC----GV------LAS--ALSMDKIL--------------TKRLLAAAGIPVAPYVVLTRGD 148 (333)
T ss_pred CCcHHHHHHHHcCCCccCC----CH------HHH--HHHhCHHH--------------HHHHHHHcCCCCCCEEEEeccc
Confidence 3346788899999999888 22 111 22323322 2355678899998776654331
Q ss_pred hHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCce
Q 013241 108 ALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRH 187 (447)
Q Consensus 108 ~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e 187 (447)
.. ........+.++||+||||..|++|.|+.+|++.+|+.++++.+... ++.++||+||+| +|
T Consensus 149 ~~----------~~~~~~~~~~~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~------~~~vlvEefI~G-~E 211 (333)
T PRK01966 149 WE----------EASLAEIEAKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEY------DRKVLVEQGIKG-RE 211 (333)
T ss_pred cc----------hhhHHHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc------CCcEEEEcCcCC-EE
Confidence 00 01224455678999999999999999999999999999999887543 478999999999 99
Q ss_pred EEEEEEEeCCCcEEEEeeeeec--cccccce-----eeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecC
Q 013241 188 IEFQVLADKYGNVVHFGERDCS--IQRRNQK-----LLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDER 260 (447)
Q Consensus 188 i~v~vl~d~~g~vv~l~~r~~s--~~~~~~k-----~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~ 260 (447)
+++.++++ ++.+..+++..+. +.....| .....|+. ++++..+++.+.+.+++++||++|++++||+++++
T Consensus 212 ~~v~vl~~-~~~~~~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~~ 289 (333)
T PRK01966 212 IECAVLGN-DPKASVPGEIVKPDDFYDYEAKYLDGSAELIIPAD-LSEELTEKIRELAIKAFKALGCSGLARVDFFLTED 289 (333)
T ss_pred EEEEEECC-CCeEcccEEEecCCceEcHHHccCCCCceEEeCCC-CCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCC
Confidence 99999986 3444433333221 1111112 23346775 99999999999999999999999999999999988
Q ss_pred CCEEEEEEeccCCCc----cchhhhhcCCCHHHHHHHH
Q 013241 261 GSFYFMEMNTRIQVE----HPVTEMISSVDLIEEQIHV 294 (447)
Q Consensus 261 G~~~~iEiNpR~~g~----~~v~e~~~GiDl~~~~i~~ 294 (447)
|++||+|+|+|++.. .|......|+|+.+..-++
T Consensus 290 g~~~vlEiNt~Pg~t~~s~~p~~~~~~G~~~~~l~~~i 327 (333)
T PRK01966 290 GEIYLNEINTMPGFTPISMYPKLWEASGLSYPELIDRL 327 (333)
T ss_pred CCEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999864 2334457799887776544
No 51
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.92 E-value=3.1e-24 Score=216.41 Aligned_cols=217 Identities=21% Similarity=0.235 Sum_probs=156.8
Q ss_pred eeccccccccCCcccccccccccccCCCCccccCCCCCCccccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccCh
Q 013241 27 LRSSQCSFMVGSRTVNFPRQVVAGVGGKLKRRCGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (447)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk 106 (447)
+....++.+|++++|||.|+ ++ .+. +++. +|.+ ..+.++++||+++.+....+.
T Consensus 103 gedg~iq~lle~~gipy~G~----~~------~as--ai~~----DK~~----------~k~~l~~~GIp~p~~~~~~~~ 156 (343)
T PRK14568 103 GEDGAIQGLLELSGIPYVGC----DI------QSS--ALCM----DKSL----------AYIVAKNAGIATPAFWTVTAD 156 (343)
T ss_pred CCchHHHHHHHHcCCCccCC----CH------HHH--HHHh----CHHH----------HHHHHHHcCcCcCCEEEEECC
Confidence 34668899999999999998 33 111 2232 3321 234567889999987776544
Q ss_pred hhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCc
Q 013241 107 DALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPR 186 (447)
Q Consensus 107 ~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ 186 (447)
++.. .+.++||+||||+.+++|+|+.+|++.+||.++++.+... +..++|||||+| +
T Consensus 157 --------------~~~~--~~~l~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~------~~~vlVEe~I~G-~ 213 (343)
T PRK14568 157 --------------ERPD--AATLTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQY------DSKVLIEEAVVG-S 213 (343)
T ss_pred --------------chhh--hhhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCcEEEECCcCC-E
Confidence 2211 3468999999999999999999999999999999876543 378999999999 9
Q ss_pred eEEEEEEEeCCCcEEEEeeeee---ccccccce---------eeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEE
Q 013241 187 HIEFQVLADKYGNVVHFGERDC---SIQRRNQK---------LLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVE 254 (447)
Q Consensus 187 ei~v~vl~d~~g~vv~l~~r~~---s~~~~~~k---------~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vE 254 (447)
|+++.+++++.+..+.-..+.+ .+.+.++| .....|+. ++++..+++.+.+.+++++||++|++++|
T Consensus 214 E~sv~vl~~~~~~~~~~~~~i~~~~~~~~~~~k~~~~~g~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD 292 (343)
T PRK14568 214 EVGCAVLGNGADLVVGEVDQIRLSHGFFRIHQENEPEKGSENSTIIVPAD-ISAEERSRVQETAKAIYRALGCRGLARVD 292 (343)
T ss_pred EEEEEEEcCCCCcceecceEEecCCCccchhhhhccccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 9999999765432221101000 11121111 12346776 89999999999999999999999999999
Q ss_pred EEEecCCCEEEEEEeccCCCcc----chhhhhcCCCHHHHHHH
Q 013241 255 FLLDERGSFYFMEMNTRIQVEH----PVTEMISSVDLIEEQIH 293 (447)
Q Consensus 255 f~~d~~G~~~~iEiNpR~~g~~----~v~e~~~GiDl~~~~i~ 293 (447)
|+++++|++||+|||++++... |......|+++.+..-+
T Consensus 293 f~l~~~g~~~llEINt~Pg~t~~S~~p~~~~~~G~~~~~l~~~ 335 (343)
T PRK14568 293 MFLQEDGTVVLNEVNTLPGFTSYSRYPRMMAAAGIPLAELIDR 335 (343)
T ss_pred EEEeCCCCEEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHHHH
Confidence 9999889999999999998642 22234678886655443
No 52
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.92 E-value=2.3e-23 Score=190.43 Aligned_cols=171 Identities=26% Similarity=0.464 Sum_probs=125.2
Q ss_pred HHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHH
Q 013241 85 RVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAK 164 (447)
Q Consensus 85 ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~ 164 (447)
...+.|+++|++++......+. +++.++...++||+||||..|+||+|++++++.+|+..+++...
T Consensus 7 ~~~~~~~~~gv~~P~~~~~~~~--------------~~~~~~~~~~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~ 72 (184)
T PF13535_consen 7 RMRELLKKAGVPVPKTRIVDSE--------------EELRAFAEDLGFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIR 72 (184)
T ss_dssp HHHHHHHHHTS----EEEECSH--------------HHHHHHHHHSSSSEEEEESS-STTTT-EEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcCCCCEEEECCH--------------HHHHHHHHHcCCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHH
Confidence 4567788899999988888888 88999999999999999999999999999999999999999887
Q ss_pred HHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeecccccc-----ceeeEecCCCCCCHHHHHHHHHHHH
Q 013241 165 SEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRN-----QKLLEEAPSPALTPELRKAMGDAAV 239 (447)
Q Consensus 165 ~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~-----~k~~~~~P~~~l~~~~~~~l~~~a~ 239 (447)
.... .....+++||||+| .++++.++.+ +|+++.+...+....... .......+ .+....+++.+.+.
T Consensus 73 ~~~~--~~~~~~ivqe~i~g-~e~~~~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 145 (184)
T PF13535_consen 73 EDSP--LGNGPVIVQEYIPG-DEYSVDGVVD-DGEVVFAGISRYVRQSPGHFSGGVPTGYSVP---SEPPLPEELRDLAR 145 (184)
T ss_dssp HHHS---HSSSEEEEE---S-EEEEEEEEEE-TTEEEEEEEEEEEEEETCCCSSSEEEEEEES-----CEHHHHHHHHHH
T ss_pred Hhcc--cCCccEEEEEeeee-eeEEEEEEEE-cceEEEEEEEEEecccccccccceeeeeecc---cccccHHHHHHHHH
Confidence 6641 11368999999998 9999999988 778766554433222111 11111122 23344489999999
Q ss_pred HHHHHcCC-ccEeEEEEEEecCCCEEEEEEeccCCCcc
Q 013241 240 AAAASIGY-IGVGTVEFLLDERGSFYFMEMNTRIQVEH 276 (447)
Q Consensus 240 ~i~~alg~-~G~~~vEf~~d~~G~~~~iEiNpR~~g~~ 276 (447)
++++++|| .|++++||+++++|++||+|+|||++|.+
T Consensus 146 ~~~~~~g~~~G~~~id~~~~~~g~~~~iEiN~R~~G~~ 183 (184)
T PF13535_consen 146 KLLRALGYRNGFFHIDFIVDPDGELYFIEINPRFGGGS 183 (184)
T ss_dssp HHHHHHT--SEEEEEEEEEETCCEEEEEEEESS--STT
T ss_pred HHHHHcCCceEEEEEEEEEeCCCCEEEEEECccCCCCC
Confidence 99999999 69999999999889999999999999864
No 53
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.91 E-value=1.6e-23 Score=211.58 Aligned_cols=234 Identities=15% Similarity=0.218 Sum_probs=163.8
Q ss_pred ceeccCCcceeccccccccCCcccccccccccccCCCCccccCCCCCCccccCCcEEEEecCcHHHHHHHHHHHHcCCCe
Q 013241 18 LFVGRGKGILRSSQCSFMVGSRTVNFPRQVVAGVGGKLKRRCGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPC 97 (447)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~kvLianrgeia~ri~r~~~~lGi~~ 97 (447)
.|.+.-.+.+..-+++.+|++++|||.|+ .+ .+. +++.+|.. ..+.++++||++
T Consensus 92 ~f~~~hg~~gEdg~iq~~le~~gipy~Gs----~~------~a~--~i~~DK~~--------------~k~~l~~~GI~~ 145 (347)
T PRK14572 92 AFLGLHGGAGEDGRIQGFLDTLGIPYTGS----GV------LAS--ALAMDKTR--------------ANQIFLQSGQKV 145 (347)
T ss_pred EEEecCCCCCCCcHHHHHHHHcCcCcCCC----CH------HHH--HHHhCHHH--------------HHHHHHHcCCCC
Confidence 45554444456678999999999999988 33 111 23333332 235567889999
Q ss_pred eEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEE
Q 013241 98 VAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVY 177 (447)
Q Consensus 98 vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~l 177 (447)
+........... . ..+++.+..++++||+||||+.|++|.||.+|++.+||..+++.+... +..+|
T Consensus 146 p~~~~~~~~~~~----~----~~~~~~~~~~~l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~------~~~vl 211 (347)
T PRK14572 146 APFFELEKLKYL----N----SPRKTLLKLESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFES------DSKVM 211 (347)
T ss_pred CCEEEEEccccc----c----ChHHHHHHHHhcCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCCEE
Confidence 987654321000 0 003344445678999999999999999999999999999999887532 47899
Q ss_pred EeeccCCCceEEEEEEEeCC-C--cEEEEeeeeecc----cc---cc--ceeeEecCCCCCCHHHHHHHHHHHHHHHHHc
Q 013241 178 LEKYVQNPRHIEFQVLADKY-G--NVVHFGERDCSI----QR---RN--QKLLEEAPSPALTPELRKAMGDAAVAAAASI 245 (447)
Q Consensus 178 vEefI~G~~ei~v~vl~d~~-g--~vv~l~~r~~s~----~~---~~--~k~~~~~P~~~l~~~~~~~l~~~a~~i~~al 245 (447)
|||||+| +|++|.++.+.. | .++.+...+... .. ++ .......|+. +++++.+++.+.+.+++++|
T Consensus 212 VEefI~G-~E~sv~vi~~~~~g~~~~~~l~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~~L 289 (347)
T PRK14572 212 SQSFLSG-TEVSCGVLERYRGGKRNPIALPATEIVPGGEFFDFESKYKQGGSEEITPAR-ISDQEMKRVQELAIRAHESL 289 (347)
T ss_pred EEcCccc-EEEEEEEEeCccCCCCCceecccEEEecCCCccCHHHccCCCCeEEEECCC-CCHHHHHHHHHHHHHHHHHh
Confidence 9999999 999999997522 2 233333322111 01 11 1223446776 89999999999999999999
Q ss_pred CCccEeEEEEEEecCCCEEEEEEeccCCCcc----chhhhhcCCCHHHHHHHH
Q 013241 246 GYIGVGTVEFLLDERGSFYFMEMNTRIQVEH----PVTEMISSVDLIEEQIHV 294 (447)
Q Consensus 246 g~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~----~v~e~~~GiDl~~~~i~~ 294 (447)
|++|++++||+++ +|++|++|+|++++... |......|+++.+..-++
T Consensus 290 g~~G~~rvD~~~~-~~~~~vlEiNt~PG~t~~S~~p~~~~~~G~~~~~l~~~i 341 (347)
T PRK14572 290 GCKGYSRTDFIIV-DGEPHILETNTLPGMTETSLIPQQAKAAGINMEEVFTDL 341 (347)
T ss_pred CCcceeEEEEEEE-CCcEEEEeeeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999997 47799999999998642 333346788877765543
No 54
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.91 E-value=6.7e-23 Score=191.32 Aligned_cols=187 Identities=21% Similarity=0.346 Sum_probs=137.4
Q ss_pred HHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHH
Q 013241 90 AHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAA 169 (447)
Q Consensus 90 ~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~ 169 (447)
++.+||+|+.+......+... ....+....++||+||||..+|+|.||.+|++.+||.++++++...
T Consensus 2 ~~~~gI~tp~~~~~~~~~~~~----------~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~~--- 68 (203)
T PF07478_consen 2 LKSAGIPTPPYVVVKKNEDDS----------DSIEKILEDLGFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFKY--- 68 (203)
T ss_dssp HHHTT-BB-SEEEEETTSHHH----------HHHHHHHHHHSSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTTT---
T ss_pred hhhcCCCCCCEEEEecccccc----------hhHHHHHhhcCCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhhh---
Confidence 678999999888776552211 1234567889999999999999999999999999999999887643
Q ss_pred hcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeec-----ccccc----ceeeEecCCCCCCHHHHHHHHHHHHH
Q 013241 170 AFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS-----IQRRN----QKLLEEAPSPALTPELRKAMGDAAVA 240 (447)
Q Consensus 170 ~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s-----~~~~~----~k~~~~~P~~~l~~~~~~~l~~~a~~ 240 (447)
++++||||||+| +|++|.+++++...+....+.... +.... .......|+. +++++.++|.+.|.+
T Consensus 69 ---~~~vlVEefI~G-~E~tv~vl~~~~~~~~~~~ei~~~~~~~d~~~Ky~~~~~~~~~~~pa~-l~~~~~~~i~~~a~~ 143 (203)
T PF07478_consen 69 ---DDDVLVEEFISG-REFTVGVLGNGEPRVLPPVEIVFPSEFYDYEAKYQPADSETEYIIPAD-LSEELQEKIKEIAKK 143 (203)
T ss_dssp ---HSEEEEEE--SS-EEEEEEEEESSSTEEEEEEEEEESSSEEEHHHHHSGCCSCEEEESS-S-S-HHHHHHHHHHHHH
T ss_pred ---cceEEEEeeecc-cceEEEEEecCCcccCceEEEEcCCCceehhheeccCCCceEEEecCC-CCHHHHHHHHHHHHH
Confidence 379999999998 999999999877555554433221 11111 3344556776 999999999999999
Q ss_pred HHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCc----cchhhhhcCCCHHHHHHHH
Q 013241 241 AAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVE----HPVTEMISSVDLIEEQIHV 294 (447)
Q Consensus 241 i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~----~~v~e~~~GiDl~~~~i~~ 294 (447)
++++||++|++.+||+++++|++||+|+|+-++-+ .+..-...|+++.+.+-++
T Consensus 144 a~~~lg~~~~~RiD~rv~~~g~~~~lEiNt~PGlt~~S~~p~~~~~~G~sy~~li~~i 201 (203)
T PF07478_consen 144 AFKALGCRGYARIDFRVDEDGKPYFLEINTIPGLTPTSLFPRMAEAAGISYEDLIERI 201 (203)
T ss_dssp HHHHTTTCSEEEEEEEEETTTEEEEEEEESS-G-STTSHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHcCCCceeEEEEeccCCceEEEeccCcccccCCCHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999989999999999999853 2333346688877776554
No 55
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.91 E-value=1.1e-22 Score=203.60 Aligned_cols=198 Identities=18% Similarity=0.261 Sum_probs=152.7
Q ss_pred HHHHHHHHcCCCeeE-----EEeccChhhHHHHHhccccCH---------HHHHH--HhhhhCCcEEEEeCCCCCCcCeE
Q 013241 85 RVIRTAHEMGIPCVA-----VYSTIDKDALHVKLADESVCI---------EEAVK--LADELGFPVMIKATAGGGGRGMR 148 (447)
Q Consensus 85 ri~r~~~~lGi~~va-----v~~~~dk~~~~~~lad~~v~i---------~e~~~--~~~~ig~PvVvKP~~g~Gg~Gv~ 148 (447)
+....+.+.|++.+. +..+.||..++..+.+.++++ +++.+ ..+.++||+|+||..|.||+|++
T Consensus 86 ~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~viKP~~g~~s~gv~ 165 (326)
T PRK12767 86 QNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPESLEDFKAALAKGELQFPLFVKPRDGSASIGVF 165 (326)
T ss_pred HHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEEcccCHHHHHhhhhcccCCCCEEEEeCCCCCccCeE
Confidence 444556666765432 234578888888888887766 45555 45678999999999999999999
Q ss_pred EECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCH
Q 013241 149 LAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTP 228 (447)
Q Consensus 149 ~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~ 228 (447)
++++.+|+.+++... .++++||||+| +|+++.++.+.+|+++.+..+............... .
T Consensus 166 ~v~~~~el~~~~~~~----------~~~lvqeyi~G-~e~~v~~~~~~~G~~~~~~~~~~~~~~~g~~~~~~~----~-- 228 (326)
T PRK12767 166 KVNDKEELEFLLEYV----------PNLIIQEFIEG-QEYTVDVLCDLNGEVISIVPRKRIEVRAGETSKGVT----V-- 228 (326)
T ss_pred EeCCHHHHHHHHHhC----------CCeEEEeccCC-ceEEEEEEEcCCCCEEEEEEeeeeeecCCceeEEEE----c--
Confidence 999999998887642 58999999999 999999999877888776554432111111111111 1
Q ss_pred HHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCCCC
Q 013241 229 ELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRY 302 (447)
Q Consensus 229 ~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l~~ 302 (447)
..+++.+.+.++++++|+.|++++||++++ |++|++|+|||+++..++. ..+|+|+.+.+++.++|++++.
T Consensus 229 -~~~~i~~~~~~i~~~lg~~G~~~vd~~~~~-g~~~viEiNpR~~g~~~~~-~~~G~n~~~~~~~~~~g~~~~~ 299 (326)
T PRK12767 229 -KDPELFKLAERLAEALGARGPLNIQCFVTD-GEPYLFEINPRFGGGYPLS-YMAGANEPDWIIRNLLGGENEP 299 (326)
T ss_pred -CCHHHHHHHHHHHHhcCCeeeEEEEEEEEC-CeEEEEEEeCCCCCcchhh-HhhCCCHHHHHHHHHcCCCCCc
Confidence 125788999999999999999999999997 6799999999999877654 5789999999999999998753
No 56
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.90 E-value=2.7e-22 Score=181.68 Aligned_cols=166 Identities=24% Similarity=0.400 Sum_probs=139.3
Q ss_pred HHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEe-CCCCCCcCeEEECCHHHHHHHHHHHHHHHH
Q 013241 90 AHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKA-TAGGGGRGMRLAKEPDEFVKLLQQAKSEAA 168 (447)
Q Consensus 90 ~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP-~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~ 168 (447)
++++|+|++.+....+. +++..+++++|||+|+|+ ..|..|+|..++++.+|+..+++.+
T Consensus 1 l~~~gip~~~~~~i~~~--------------~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~----- 61 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSL--------------EDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQEL----- 61 (172)
T ss_dssp HHHTT--B-EEEEESSH--------------HHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHT-----
T ss_pred CcccCCCCCCeEEECCH--------------HHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhc-----
Confidence 57899999999999999 999999999999999995 5566899999999999999988765
Q ss_pred HhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCc
Q 013241 169 AAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYI 248 (447)
Q Consensus 169 ~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~ 248 (447)
+..++++|+||+-.+|+++.+.++.+|++..+...+ ..++.+......+|+. +++++.+++.+++.+++++|+|.
T Consensus 62 ---~~~~~ilE~~v~f~~EiSvivaR~~~G~~~~yp~~e-n~~~~~il~~s~~Pa~-i~~~~~~~a~~ia~~i~~~l~~v 136 (172)
T PF02222_consen 62 ---GGGPCILEEFVPFDREISVIVARDQDGEIRFYPPVE-NVHRDGILHESIAPAR-ISDEVEEEAKEIARKIAEALDYV 136 (172)
T ss_dssp ---TTSCEEEEE---ESEEEEEEEEEETTSEEEEEEEEE-EEEETTEEEEEEESCS-S-HHHHHHHHHHHHHHHHHHTSS
T ss_pred ---CCCcEEEEeccCCcEEEEEEEEEcCCCCEEEEcCce-EEEECCEEEEEECCCC-CCHHHHHHHHHHHHHHHHHcCcE
Confidence 458999999999999999999999999988776654 4556666666678887 99999999999999999999999
Q ss_pred cEeEEEEEEecCCC-EEEEEEeccCCCccchh
Q 013241 249 GVGTVEFLLDERGS-FYFMEMNTRIQVEHPVT 279 (447)
Q Consensus 249 G~~~vEf~~d~~G~-~~~iEiNpR~~g~~~v~ 279 (447)
|++.|||+++++|+ +||.|+.||+..+.++|
T Consensus 137 Gv~~VE~Fv~~~g~~v~vNEiaPRpHnSGh~T 168 (172)
T PF02222_consen 137 GVLAVEFFVTKDGDEVLVNEIAPRPHNSGHWT 168 (172)
T ss_dssp EEEEEEEEEETTSTEEEEEEEESS--GGGGGH
T ss_pred EEEEEEEEEecCCCEEEEEeccCCccCcccEe
Confidence 99999999999998 99999999999875555
No 57
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.90 E-value=6.3e-23 Score=203.40 Aligned_cols=220 Identities=22% Similarity=0.333 Sum_probs=159.4
Q ss_pred eeccccccccCCcccccccccccccCCCCccccCCCCCCccccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccCh
Q 013241 27 LRSSQCSFMVGSRTVNFPRQVVAGVGGKLKRRCGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (447)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk 106 (447)
.+..+++.++++++++|.|+ .+ .+. .++.++. ...+.++++|++++......+.
T Consensus 69 ~~~~~~~~~le~~gi~~~g~----~~------~~~--~~~~dK~--------------~~k~~l~~~gIp~p~~~~~~~~ 122 (304)
T PRK01372 69 GEDGTIQGLLELLGIPYTGS----GV------LAS--ALAMDKL--------------RTKLVWQAAGLPTPPWIVLTRE 122 (304)
T ss_pred CCccHHHHHHHHcCCCccCC----CH------HHH--HHHhCHH--------------HHHHHHHHCCCCCCCEEEEeCc
Confidence 34567888888889988877 22 111 1122222 1234577899999988887777
Q ss_pred hhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCc
Q 013241 107 DALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPR 186 (447)
Q Consensus 107 ~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ 186 (447)
+++...+++++||+|+||..|+||+|+.++++.+|+.+++++... + ...+++||||+| +
T Consensus 123 --------------~~~~~~~~~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~-----~-~~~~lvEe~i~G-~ 181 (304)
T PRK01372 123 --------------EDLLAAIDKLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAFK-----Y-DDEVLVEKYIKG-R 181 (304)
T ss_pred --------------chHHHHHhhcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHh-----c-CCcEEEEcccCC-E
Confidence 667778889999999999999999999999999999988876632 2 378999999998 9
Q ss_pred eEEEEEEEeCCCcEEEEeeee--eccccc--cceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCC
Q 013241 187 HIEFQVLADKYGNVVHFGERD--CSIQRR--NQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGS 262 (447)
Q Consensus 187 ei~v~vl~d~~g~vv~l~~r~--~s~~~~--~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~ 262 (447)
|+++.++++....++.+.... +.+... ........|+. ++++..+++.+.+.++++++|++|++++||++|++|+
T Consensus 182 E~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~~g~ 260 (304)
T PRK01372 182 ELTVAVLGGKALPVIEIVPAGEFYDYEAKYLAGGTQYICPAG-LPAEIEAELQELALKAYRALGCRGWGRVDFMLDEDGK 260 (304)
T ss_pred EEEEEEECCCccceEEEEecCCEEeeeccccCCCeEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCC
Confidence 999999976433332221110 011111 11123344653 8899999999999999999999999999999998899
Q ss_pred EEEEEEeccCCCcc----chhhhhcCCCHHHHHHHH
Q 013241 263 FYFMEMNTRIQVEH----PVTEMISSVDLIEEQIHV 294 (447)
Q Consensus 263 ~~~iEiNpR~~g~~----~v~e~~~GiDl~~~~i~~ 294 (447)
+||+|+|+|++... +......|+|+.+.+..+
T Consensus 261 ~~viEvN~~p~~~~~~~~~~~~~~~g~~~~~~~~~i 296 (304)
T PRK01372 261 PYLLEVNTQPGMTSHSLVPMAARAAGISFSELVDRI 296 (304)
T ss_pred EEEEEecCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 99999999987531 222334598877766554
No 58
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.90 E-value=4.6e-23 Score=205.34 Aligned_cols=223 Identities=19% Similarity=0.312 Sum_probs=158.1
Q ss_pred eccccccccCCcccccccccccccCCCCccccCCCCCCccccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEecc-Ch
Q 013241 28 RSSQCSFMVGSRTVNFPRQVVAGVGGKLKRRCGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI-DK 106 (447)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~-dk 106 (447)
...+++.+++.+++||.++ .+ .+. .++.+|. ...+.++++|++++.+.... +.
T Consensus 77 ~~~~~~~~le~~gip~~g~----~~------~~~--~~~~dK~--------------~~~~~l~~~gip~p~~~~~~~~~ 130 (315)
T TIGR01205 77 EDGTIQGLLELMGIPYTGS----GV------LAS--ALSMDKL--------------LTKLLWKALGLPTPDYIVLTQNR 130 (315)
T ss_pred CCcHHHHHHHHcCCCccCC----CH------HHH--HHHHCHH--------------HHHHHHHHCCCCCCCEEEEeccc
Confidence 4467889999999999887 22 111 1222222 23456778999999877655 33
Q ss_pred hhHHHHHhccccCHHHH--HHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCC
Q 013241 107 DALHVKLADESVCIEEA--VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN 184 (447)
Q Consensus 107 ~~~~~~lad~~v~i~e~--~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G 184 (447)
... +++ ....+.++||+|+||..|++|+|+.+|++.+|+.++++.+... +..+++|+||+|
T Consensus 131 ~~~-----------~~~~~~~~~~~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~i~G 193 (315)
T TIGR01205 131 ASA-----------DELECEQVAEPLGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFEY------DEEVLVEQFIKG 193 (315)
T ss_pred ccc-----------hhhhHHHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc------CCcEEEEcCCCC
Confidence 100 111 2334678999999999999999999999999999998876532 368999999998
Q ss_pred CceEEEEEEEeCCCcEE-EEeeeeecccccc-----ceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEe
Q 013241 185 PRHIEFQVLADKYGNVV-HFGERDCSIQRRN-----QKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLD 258 (447)
Q Consensus 185 ~~ei~v~vl~d~~g~vv-~l~~r~~s~~~~~-----~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d 258 (447)
+|+++.+++++++..+ .+......+.... .......|+. ++++..++|.+.+.+++++||+.|++++||+++
T Consensus 194 -~e~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~ 271 (315)
T TIGR01205 194 -RELEVSILGNEEALPIIEIVPEIEGFYDYEAKYLDGSTEYVIPAP-LDEELEEKIKELALKAYKALGCRGLARVDFFLD 271 (315)
T ss_pred -EEEEEEEECCCCccceEEecCCCCCeeCcccccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEe
Confidence 9999999986443222 2211111011111 1122335664 899999999999999999999999999999999
Q ss_pred cCCCEEEEEEeccCCCcc----chhhhhcCCCHHHHHHHHH
Q 013241 259 ERGSFYFMEMNTRIQVEH----PVTEMISSVDLIEEQIHVA 295 (447)
Q Consensus 259 ~~G~~~~iEiNpR~~g~~----~v~e~~~GiDl~~~~i~~a 295 (447)
++|++||+|+|||++... +......|+|+.+++..+.
T Consensus 272 ~~g~~~viEvN~~pg~~~~s~~~~~~~~~G~~~~~l~~~ii 312 (315)
T TIGR01205 272 EEGEIYLNEINTIPGMTAISLFPKAAAAAGIEFSQLVERIL 312 (315)
T ss_pred CCCCEEEEEeeCCCCCCCccHHHHHHHHcCCCHHHHHHHHH
Confidence 888999999999987642 2233456999888877654
No 59
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.89 E-value=9.5e-23 Score=226.85 Aligned_cols=227 Identities=17% Similarity=0.138 Sum_probs=162.6
Q ss_pred eeccccccccCCcccccccccccccCCCCccccCCCCCCccccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccCh
Q 013241 27 LRSSQCSFMVGSRTVNFPRQVVAGVGGKLKRRCGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (447)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk 106 (447)
+....++.+|++++|||+|+ .+ .++ +++.++... -+.+++.||+++.+......
T Consensus 539 gedg~iq~~le~~gipy~Gs----~~------~as--al~~DK~~~--------------K~~l~~~GIpt~~~~~~~~~ 592 (809)
T PRK14573 539 GEDGTMQGFLEIIGKPYTGP----SL------AFS--AIAMDKVLT--------------KRFASDVGVPVVPYQPLTLA 592 (809)
T ss_pred CCChHHHHHHHHcCCCeeCC----CH------HHH--HHHcCHHHH--------------HHHHHHCCCCCCCEEEEech
Confidence 56678999999999999998 33 111 334333332 34466789999987665431
Q ss_pred hhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCc
Q 013241 107 DALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPR 186 (447)
Q Consensus 107 ~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ 186 (447)
.... +. -..+.+..++++||+||||+.+++|.|+.+|++.+||.++++.+... +.++||||||.+++
T Consensus 593 ~~~~----~~---~~~~~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~------~~~vlVEe~i~~gr 659 (809)
T PRK14573 593 GWKR----EP---ELCLAHIVEAFSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLY------DTDVFVEESRLGSR 659 (809)
T ss_pred hccc----Ch---HHHHHHHHHhcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCcEEEEeccCCCE
Confidence 1000 00 02234556789999999999999999999999999999999877532 47899999998879
Q ss_pred eEEEEEEEeCCCcEEE--Eeeeeec--ccccccee--------eEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEE
Q 013241 187 HIEFQVLADKYGNVVH--FGERDCS--IQRRNQKL--------LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVE 254 (447)
Q Consensus 187 ei~v~vl~d~~g~vv~--l~~r~~s--~~~~~~k~--------~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vE 254 (447)
|++|.+++++.+..+. ..++.+. +..+..|+ ....|+. +++++.+++.+.+.+++++||++|+++||
T Consensus 660 Ei~v~vl~~~~~~~~~~~~~e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~riD 738 (809)
T PRK14573 660 EIEVSCLGDGSSAYVIAGPHERRGSGGFIDYQEKYGLSGKSSAQIVFDLD-LSKESQEQVLELAERIYRLLQGKGSCRID 738 (809)
T ss_pred EEEEEEEeCCCCceEeccceEEccCCCeeCchhcccCCCCCceEEecCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEE
Confidence 9999999987654322 1222221 11111111 1224665 99999999999999999999999999999
Q ss_pred EEEecCCCEEEEEEeccCCCcc----chhhhhcCCCHHHHHHH
Q 013241 255 FLLDERGSFYFMEMNTRIQVEH----PVTEMISSVDLIEEQIH 293 (447)
Q Consensus 255 f~~d~~G~~~~iEiNpR~~g~~----~v~e~~~GiDl~~~~i~ 293 (447)
|+++++|++||+|+||||+-.. |......|+++.+.+-+
T Consensus 739 f~v~~~g~~yv~EiNt~PG~t~~s~~p~~~~~~G~~~~~li~~ 781 (809)
T PRK14573 739 FFLDEEGNFWLSEMNPIPGMTEASPFLTAFVRKGWTYEQIVHQ 781 (809)
T ss_pred EEEcCCCCEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHH
Confidence 9999889999999999998642 33334668876655443
No 60
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.89 E-value=1e-22 Score=201.59 Aligned_cols=214 Identities=18% Similarity=0.283 Sum_probs=151.1
Q ss_pred eccccccccCCcccccccccccccCCCCccccCCCCCCccccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChh
Q 013241 28 RSSQCSFMVGSRTVNFPRQVVAGVGGKLKRRCGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKD 107 (447)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~ 107 (447)
+..+++.+++.+++||.|+ ++ .+. +++.+|.+.| +.++ .|++++.+....+.
T Consensus 67 e~~~~~~~le~~gip~~G~----~~------~a~--~i~~DK~~~k--------------~~l~-~~ip~p~~~~~~~~- 118 (299)
T PRK14571 67 EDGTLQAILDFLGIRYTGS----DA------FSS--MICFDKLLTY--------------RFLK-GTVEIPDFVEIKEF- 118 (299)
T ss_pred CccHHHHHHHHcCCCccCC----CH------HHH--HHHcCHHHHH--------------HHHh-cCCCCCCEEEEech-
Confidence 5678999999999999988 33 111 2333333222 2233 47888877665332
Q ss_pred hHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCce
Q 013241 108 ALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRH 187 (447)
Q Consensus 108 ~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~e 187 (447)
. ....++||+|+||..|+||+|+.+|+|.+||.++++..... ...++|||||+| +|
T Consensus 119 -------------~----~~~~l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~------~~~vlVEeyI~G-~E 174 (299)
T PRK14571 119 -------------M----KTSPLGYPCVVKPRREGSSIGVFICESDEEFQHALKEDLPR------YGSVIVQEYIPG-RE 174 (299)
T ss_pred -------------h----hhhhcCCCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhh------CCcEEEEccccc-eE
Confidence 1 23468999999999999999999999999999988765432 357999999998 99
Q ss_pred EEEEEEEeCCCcEEEEeeeeecccc----cc-----ceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEe
Q 013241 188 IEFQVLADKYGNVVHFGERDCSIQR----RN-----QKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLD 258 (447)
Q Consensus 188 i~v~vl~d~~g~vv~l~~r~~s~~~----~~-----~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d 258 (447)
+++.+++++.+. ..++..+..... .. .......|+. ++++..+++.+.+.++++++|+.|++++||+++
T Consensus 175 ~sv~vl~~~~~~-~vl~~~e~~~~~~~~~~~~k~~~g~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~ 252 (299)
T PRK14571 175 MTVSILETEKGF-EVLPILELRPKRRFYDYVAKYTKGETEFILPAP-LNPEEERLVKETALKAFVEAGCRGFGRVDGIFS 252 (299)
T ss_pred EEEEEEcCCCCe-eeeceEEEecCCCccccccccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEE
Confidence 999999875432 222221111110 00 1122235665 899999999999999999999999999999997
Q ss_pred cCCCEEEEEEeccCCCcc----chhhhhcCCCHHH---HHHHHHc
Q 013241 259 ERGSFYFMEMNTRIQVEH----PVTEMISSVDLIE---EQIHVAM 296 (447)
Q Consensus 259 ~~G~~~~iEiNpR~~g~~----~v~e~~~GiDl~~---~~i~~a~ 296 (447)
+ |++||+|+|++++... +..-...|+|+.+ .+++.++
T Consensus 253 ~-~~~~viEiN~~Pg~~~~s~~~~~~~~~G~~~~~li~~ii~~a~ 296 (299)
T PRK14571 253 D-GRFYFLEINTVPGLTELSDLPASAKAGGIEFEELVDIIIKSAF 296 (299)
T ss_pred C-CcEEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4 6799999999998642 2222356888776 4555544
No 61
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.89 E-value=7.9e-21 Score=188.94 Aligned_cols=313 Identities=19% Similarity=0.215 Sum_probs=215.6
Q ss_pred cCCcEEEEecCcHHHHHHHHHHHHcCCCeeE-----EEeccChhhHHHHHhccccCH---------HHHHHHhhhhCCcE
Q 013241 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVA-----VYSTIDKDALHVKLADESVCI---------EEAVKLADELGFPV 134 (447)
Q Consensus 69 ~~~~kvLianrgeia~ri~r~~~~lGi~~va-----v~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~Pv 134 (447)
..++=+.|--=--.+.-|...+++.||++.. .....+|.-.+..|++++|+. +++.+++++.|.|+
T Consensus 62 ~~idl~vVGPE~pL~~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y~~f~~~e~a~ayi~~~g~pi 141 (428)
T COG0151 62 KNVDLVVVGPEAPLVAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYEVFTDPEEAKAYIDEKGAPI 141 (428)
T ss_pred cCCCEEEECCcHHHhhhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHcCCCE
Confidence 3344333322334566788888888888763 234467777777888888776 89999999999999
Q ss_pred EEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCC--CcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeecccc
Q 013241 135 MIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGN--DGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQR 212 (447)
Q Consensus 135 VvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~--~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~ 212 (447)
||||..-.+|+||.++.+.+|..+++..+... ..|++ .+++||||++| .|++++++.|++ +++.+.. .|.
T Consensus 142 VVKadGLaaGKGV~V~~~~eeA~~a~~~~l~~--~~fg~~g~~VVIEEfL~G-eE~S~~a~~DG~-~v~p~p~----aQD 213 (428)
T COG0151 142 VVKADGLAAGKGVIVAMTLEEAEAAVDEMLEG--NAFGSAGARVVIEEFLDG-EEFSLQAFVDGK-TVIPMPT----AQD 213 (428)
T ss_pred EEecccccCCCCeEEcCCHHHHHHHHHHHHhh--ccccCCCCcEEEEecccc-eEEEEEEEEcCC-eEEECcc----ccc
Confidence 99999999999999999999999998877654 23543 45999999999 999999999987 6665532 222
Q ss_pred c-----------cceeeEecCCCCCCHHHHHHHH-HHHHHHHHHc-----CCccEeEEEEEEecCCCEEEEEEeccCCC-
Q 013241 213 R-----------NQKLLEEAPSPALTPELRKAMG-DAAVAAAASI-----GYIGVGTVEFLLDERGSFYFMEMNTRIQV- 274 (447)
Q Consensus 213 ~-----------~~k~~~~~P~~~l~~~~~~~l~-~~a~~i~~al-----g~~G~~~vEf~~d~~G~~~~iEiNpR~~g- 274 (447)
+ ..-....+|+|.+++++.+++. ++....++.+ .|+|+....|+++++| +++||.|.|++.
T Consensus 214 hKra~dgD~GPNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~G-PkViEfN~RFGDP 292 (428)
T COG0151 214 HKRAYDGDTGPNTGGMGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADG-PKVIEFNARFGDP 292 (428)
T ss_pred cccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCC-cEEEEEecccCCh
Confidence 2 1223456899999998777665 5555555554 4679999999999999 999999999987
Q ss_pred ccchhhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEec-CCCCcEE-Eeeeec
Q 013241 275 EHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLP-AGGPFVR-MDSHVY 352 (447)
Q Consensus 275 ~~~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~-~~~~~vr-~d~~~~ 352 (447)
|...+-....-||++.++..+.|.--.... ...+..+..|.+.|...+.. .|..|......+ ....+.. +..++.
T Consensus 293 Etq~vL~~l~sdl~~~~~a~~~g~L~~~~~--~~~~~~a~v~vvlA~~GYP~-~~~kG~~I~~~~~~~~~~~~vf~Agv~ 369 (428)
T COG0151 293 ETQVVLPLLESDLVELLLAAVDGKLDEVEI--LFWDKGAAVGVVLAAEGYPG-DPEKGDVITGDEEAEEEGAKVFHAGVK 369 (428)
T ss_pred hHHHHHHhccccHHHHHHHHHhCCccccch--hhccCCceEEEEEecCCCCC-CCCCCCEEecChhhcccCcEEEEeeEe
Confidence 455555566889999999999994322110 01121123333333321111 255664443321 1121322 223332
Q ss_pred --CCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhhccEEecc
Q 013241 353 --PDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGV 394 (447)
Q Consensus 353 --~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G~ 394 (447)
.|..+-++ ++++-.|++.|+|.+||.++++++++.+..+|.
T Consensus 370 ~~~~~~lvt~-GgRvL~v~~~g~t~~eA~~~ay~~~~~i~~~g~ 412 (428)
T COG0151 370 LDDGGQLVTS-GGRVLAVVGTGDTLEEAQEKAYEALEKIHFDGL 412 (428)
T ss_pred ccCCceEEec-CCeEEEEEecCCCHHHHHHHHHHHHhhcCCCCc
Confidence 23223332 456888999999999999999999999998774
No 62
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.87 E-value=7.8e-21 Score=188.02 Aligned_cols=215 Identities=22% Similarity=0.284 Sum_probs=153.8
Q ss_pred EEEEecCcHHH-HHHHHHHHHcCCCeeEEE------eccChhhHHHHHhccccCH---------HHHHHHhhhhCCc---
Q 013241 73 KILVANRGEIA-VRVIRTAHEMGIPCVAVY------STIDKDALHVKLADESVCI---------EEAVKLADELGFP--- 133 (447)
Q Consensus 73 kvLianrgeia-~ri~r~~~~lGi~~vav~------~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~P--- 133 (447)
+|++-.+.... .+=.....+.|+...... ...||.++...+.+.++++ ++...+++++++|
T Consensus 68 dv~~P~~~~~~l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~v~t~~el~~a~~~l~~~~~~ 147 (329)
T PF15632_consen 68 DVFVPGRNRELLAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWRVRTADELKAAYEELRFPGQP 147 (329)
T ss_pred eEEEcCccHHHHHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEEeCCHHHHHHHHHhcCCCCce
Confidence 44455443222 222334455666654411 2356666666666666655 7777778877776
Q ss_pred EEEEeCCCCCCcCeEEEC-CHHHHHHHHH---------HHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEE
Q 013241 134 VMIKATAGGGGRGMRLAK-EPDEFVKLLQ---------QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 203 (447)
Q Consensus 134 vVvKP~~g~Gg~Gv~~v~-~~~el~~~~~---------~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l 203 (447)
++|||+.|.||.|.++++ +.+++...+. ........+-.-.+++|++|++| .|++|+++++. |+++..
T Consensus 148 ~CvKP~~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~G-~EySVD~l~~~-G~viaa 225 (329)
T PF15632_consen 148 LCVKPAVGIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYLPG-PEYSVDCLADE-GRVIAA 225 (329)
T ss_pred EEEecccCCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCCCC-CeEEEEEEecC-CEEEEE
Confidence 999999999999999998 5555554433 11111111111378999999999 99999999986 788866
Q ss_pred eeeeeccccccceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhc
Q 013241 204 GERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMIS 283 (447)
Q Consensus 204 ~~r~~s~~~~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~ 283 (447)
..|... .+.|.+ +...++.+.+.++++.+|+.|+++|+|+.|.+|++++||||||++|+-..+. .+
T Consensus 226 V~R~K~--G~~q~l-----------~~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~~g~p~LLEINpR~sGGi~~s~-~a 291 (329)
T PF15632_consen 226 VPRRKL--GRRQVL-----------ENDEELIELARRLAEAFGLDGLFNIQFRYDEDGNPKLLEINPRPSGGIGYSC-AA 291 (329)
T ss_pred EEEEec--CceeEE-----------EECHHHHHHHHHHHHHhCCCceEEEEEEEcCCCCEEEEEeCCCCccchhhHh-hc
Confidence 555432 122222 1335778999999999999999999999998999999999999999877764 67
Q ss_pred CCCHHHHHHHHHcCCCCCCC
Q 013241 284 SVDLIEEQIHVAMGGKLRYK 303 (447)
Q Consensus 284 GiDl~~~~i~~a~G~~l~~~ 303 (447)
|+|++.+.+..++|++.+..
T Consensus 292 GvNlp~la~~~~lG~~~~~~ 311 (329)
T PF15632_consen 292 GVNLPYLAVKLALGEPIPPP 311 (329)
T ss_pred CCChHHHHHHHHcCCCCCCc
Confidence 99999999999999988544
No 63
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.87 E-value=1.6e-22 Score=212.72 Aligned_cols=305 Identities=23% Similarity=0.353 Sum_probs=240.8
Q ss_pred CCCccccCCCCCCccccCCc--EEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH---------H
Q 013241 53 GKLKRRCGGGGALKVTCRQE--KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI---------E 121 (447)
Q Consensus 53 ~~~~~~~~~g~~~~~~~~~~--kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i---------~ 121 (447)
.++..++++||||+||+++. |.-+..+ .++++ +|-+.-.+...+|+..+..++.+-...+ +
T Consensus 452 rPd~il~tfggqtaLncgvel~k~gvf~~--~~vkv------Lgt~i~ti~ttedr~lfa~am~ei~e~ia~s~a~~sie 523 (1435)
T KOG0370|consen 452 RPDGILLTFGGQTALNCGVELDKAGVFAQ--YGVKV------LGTPIQTIITTEDRDLFARALNEINEKIAPSEAVSTIE 523 (1435)
T ss_pred CCCeEEEecCCccccccceeeeecccccc--cchhh------hCCCcccceeeccHHHHHHHHHhhcccccchhhHhHHH
Confidence 34567799999999999964 4333322 33333 6877778888899998888887665544 8
Q ss_pred HHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEE
Q 013241 122 EAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVV 201 (447)
Q Consensus 122 e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv 201 (447)
++.++++++|||+|+.....-||.|--.+.|.+||.+...++.+.+ ..++||+-+.|.+|++.++++|..++++
T Consensus 524 ~al~aae~l~ypvivRaayalgglgSgfa~n~eeL~~l~~~a~a~s------~QilvekSlkGwkevEyevvrDa~~nci 597 (1435)
T KOG0370|consen 524 EALEAAERLGYPVIVRAAYALGGLGSGFANNEEELQDLAAQALALS------PQILVEKSLKGWKEVEYEVVRDAYDNCI 597 (1435)
T ss_pred HHHHHHHhcCcHHHHHHHHHhcCccccccccHHHHHHHHhhccccC------ceeeehhhhccccceEEEEEeccccchh
Confidence 9999999999999999999999999999999999999888776653 8999999999999999999999999988
Q ss_pred EEeeeeeccccc------cceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecC-CCEEEEEEeccCCC
Q 013241 202 HFGERDCSIQRR------NQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTRIQV 274 (447)
Q Consensus 202 ~l~~r~~s~~~~------~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~-G~~~~iEiNpR~~g 274 (447)
.. |.+... ....+-.+|+..++++..+.++..+.++.+++|..|-+++++.+++. -++++||+|+|++.
T Consensus 598 Tv----cnmen~DplgihtGdSiVvapsqtlsd~ey~mlrttaikVirhlgvvGEcniQyaL~p~s~~y~IiEVNarLSr 673 (1435)
T KOG0370|consen 598 TV----CNMENFDPLGIHTGDSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVGECNIQYALNPYSLEYRIIEVNARLSR 673 (1435)
T ss_pred hh----cCCcccCcceeeccceEEEeeccccChHHHHHHHhcchhheeccCCcccccceeeecccceeEEEEEEEeEEee
Confidence 77 444332 23455678999999999999999999999999999999999999953 46999999999999
Q ss_pred ccchhhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeee--ec
Q 013241 275 EHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSH--VY 352 (447)
Q Consensus 275 ~~~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~--~~ 352 (447)
+..+...+||..|.....++++|.+++.....+. +... ..|.|+-+.+..-.| |+|.. .+
T Consensus 674 ssaLASkaTgypLAy~aAKlalg~~lpe~~n~Vt--~~T~----------AcFEpslDY~v~Kip------rWDl~kf~~ 735 (1435)
T KOG0370|consen 674 SSALASKATGYPLAYTAAKLALGIPLPELKNSVT--KTTT----------ACFEPSLDYCVVKIP------RWDLSKFQR 735 (1435)
T ss_pred hhhhhccCccCcHHHHHHHHhcCcccccCCcccc--ccee----------cccCcchhheeeecc------cccHHHHHH
Confidence 9999999999999999999999999976554332 2211 246777665543221 33322 23
Q ss_pred CCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhhccEEeccc
Q 013241 353 PDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVP 395 (447)
Q Consensus 353 ~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G~~ 395 (447)
...++...+.| +|.|++.|+++|||++|+.|..+. .+.|+.
T Consensus 736 vs~~igssmKS-vgEvm~iGR~feea~QKalr~vd~-~~~Gf~ 776 (1435)
T KOG0370|consen 736 VSTEIGSSMKS-VGEVMAIGRTFEEAFQKALRMVDP-SLLGFM 776 (1435)
T ss_pred HHHhhchhhhh-hhhhhhhhhhHHHHHHHHHhhcCh-hhcCcc
Confidence 34456666677 999999999999999999999875 334544
No 64
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.85 E-value=5.5e-20 Score=175.96 Aligned_cols=218 Identities=21% Similarity=0.266 Sum_probs=148.5
Q ss_pred CcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeecc-
Q 013241 132 FPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSI- 210 (447)
Q Consensus 132 ~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~- 210 (447)
+++|+||+.|+||. +.++.-.++.. ...+++||||+| +++++.++.++.........+..-.
T Consensus 150 kt~IlKPv~GaGG~-~el~~~~Ee~~---------------~~~~i~Qefi~G-~p~Svs~is~g~~a~~la~N~QiI~~ 212 (389)
T COG2232 150 KTLILKPVSGAGGL-VELVKFDEEDP---------------PPGFIFQEFIEG-RPVSVSFISNGSDALTLAVNDQIIDG 212 (389)
T ss_pred eeeEEeeccCCCce-eeecccccccC---------------CcceehhhhcCC-ceeEEEEEecCcceEEEEEeeeeecc
Confidence 46999999999996 33333222211 267999999999 9999999998763333221111000
Q ss_pred --cccccee--eEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCC
Q 013241 211 --QRRNQKL--LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVD 286 (447)
Q Consensus 211 --~~~~~k~--~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiD 286 (447)
..+.|.. ....|.+ +.+ .+++++.+..++..||+.|.-+|||++.+.| +|+||||||+||....+|+++|+|
T Consensus 213 ~~~~~~~f~Y~GNlTP~~--~~~-~ee~e~la~elV~~lgL~GsnGVDfvl~d~g-pyViEVNPR~qGt~e~iE~s~giN 288 (389)
T COG2232 213 LRGEYSQFVYKGNLTPFP--YEE-VEEAERLAEELVEELGLVGSNGVDFVLNDKG-PYVIEVNPRIQGTLECIERSSGIN 288 (389)
T ss_pred cccccccceeccCcCCCc--chh-hHHHHHHHHHHHHHhccccccccceEeecCC-cEEEEecCcccchHHHHHHhcCCC
Confidence 0001111 1123443 222 3789999999999999999999999999888 999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccce
Q 013241 287 LIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLG 366 (447)
Q Consensus 287 l~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg 366 (447)
++++++.+..|+-+ +.+.++++++...+|| |..-.+..+ ...+++ | --.+|..+.. -+| +.
T Consensus 289 l~~lHi~af~G~Lp----Er~kpr~~a~krILya--------p~~v~v~~l---~~~~~~-D-iP~~Gtviek-geP-l~ 349 (389)
T COG2232 289 LFRLHIQAFDGELP----ERPKPRGYACKRILYA--------PRTVRVPIL---KLSWTH-D-IPRPGTVIEK-GEP-LC 349 (389)
T ss_pred HHHHHHHHhcCcCc----CCCCcceeEEeEEEec--------cceeecccc---cccccc-c-CCCCCcccCC-CCc-ee
Confidence 99999999999644 3455788888887776 221111100 111111 1 1123333333 245 89
Q ss_pred EEEEEcCCHHHHHHHHHHhhhcc
Q 013241 367 KLIVWAPTREKAIERMKRALNDT 389 (447)
Q Consensus 367 ~vi~~g~~~~eA~~~~~~al~~~ 389 (447)
.||+.+.++++|...+.+.++.+
T Consensus 350 sviA~~nt~~~a~~~~er~~erv 372 (389)
T COG2232 350 SVIASSNTRSGAESMAERLAERV 372 (389)
T ss_pred eeeeccCCHHHHHHHHHHHHHHH
Confidence 99999999999999888777643
No 65
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.83 E-value=4.9e-19 Score=172.65 Aligned_cols=200 Identities=24% Similarity=0.331 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHcCCCeeEE----EeccChhhHHHHHhccccCH---------HHHHHHhhhhCCcEEEEeCCCCCCcCe
Q 013241 81 EIAVRVIRTAHEMGIPCVAV----YSTIDKDALHVKLADESVCI---------EEAVKLADELGFPVMIKATAGGGGRGM 147 (447)
Q Consensus 81 eia~ri~r~~~~lGi~~vav----~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv 147 (447)
+....+.+.++..|+++..- ..+.||..++..+.+.++++ +++.++.++++||+|+||..|++|+|+
T Consensus 60 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gi~~P~t~~~~~~~~~~~~~~~~~~p~vvKP~~g~~g~gv 139 (277)
T TIGR00768 60 FRGLAVARYLESLGVPVINSSDAILNAGDKFLTSQLLAKAGLPQPRTGLAGSPEEALKLIEEIGFPVVLKPVFGSWGRLV 139 (277)
T ss_pred hhHHHHHHHHHHCCCeeeCCHHHHHHHhhHHHHHHHHHHCCCCCCCEEEeCCHHHHHHHHHhcCCCEEEEECcCCCCCce
Confidence 33456777777788775422 24577877788887777766 677788889999999999999999999
Q ss_pred EEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCC--ceEEEEEEEeCCCcEEEEeeee--eccccccceeeEecCC
Q 013241 148 RLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNP--RHIEFQVLADKYGNVVHFGERD--CSIQRRNQKLLEEAPS 223 (447)
Q Consensus 148 ~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~--~ei~v~vl~d~~g~vv~l~~r~--~s~~~~~~k~~~~~P~ 223 (447)
+++++.+++..+++...... -....+++||||++. .++++.++ +|+++....+. ..+...........|.
T Consensus 140 ~~i~~~~~l~~~~~~~~~~~---~~~~~~lvQe~I~~~~~~~~rv~v~---~~~~~~~~~r~~~~~~~~n~~~g~~~~~~ 213 (277)
T TIGR00768 140 SLARDKQAAETLLEHFEQLN---GPQNLFYVQEYIKKPGGRDIRVFVV---GDEVIAAIYRITSGHWRTNLARGGKAEPC 213 (277)
T ss_pred EEEcCHHHHHHHHHHHHHhc---ccCCcEEEEeeecCCCCceEEEEEE---CCEEEEEEEEcCCCchhhhhhcCCeeeec
Confidence 99999999988776543321 012479999999974 35555554 23555443332 1111100000111222
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHH
Q 013241 224 PALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHV 294 (447)
Q Consensus 224 ~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~ 294 (447)
. ++ +++.+.+.++++++|+ |.+++||++|++|++||+|+|+|++.. ..+..+|+|+.+++++.
T Consensus 214 ~-l~----~~~~~~a~~~~~~l~~-~~~~vD~~~~~~g~~~viEiN~~p~~~--~~~~~~g~~l~~~~~~~ 276 (277)
T TIGR00768 214 P-LT----EEIEELAIKAAKALGL-DVVGIDLLESEDRGLLVNEVNPNPEFK--NSVKTTGVNIAGKLLDY 276 (277)
T ss_pred C-CC----HHHHHHHHHHHHHhCC-CeEEEEEEEcCCCCeEEEEEcCCcchh--hhHHHHCCCHHHHHHhh
Confidence 2 33 4678899999999999 799999999988889999999998743 45678999999998864
No 66
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.82 E-value=7.2e-19 Score=174.20 Aligned_cols=208 Identities=19% Similarity=0.241 Sum_probs=150.3
Q ss_pred CcEEEEecCc---HHHHHHHHHHHHcCCCeeE----EEeccChhhHHHHHhccccCH---------HHHHHHhhhh-CCc
Q 013241 71 QEKILVANRG---EIAVRVIRTAHEMGIPCVA----VYSTIDKDALHVKLADESVCI---------EEAVKLADEL-GFP 133 (447)
Q Consensus 71 ~~kvLianrg---eia~ri~r~~~~lGi~~va----v~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~i-g~P 133 (447)
++-+++...+ ..+....+.++.+|..+.. ...+.||..++..+.+.++++ +++.++++++ +||
T Consensus 58 ~d~v~~~~~~~~~~~~~~~~~~le~~g~~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~~~~P 137 (300)
T PRK10446 58 FDAVIPRIGTAITFYGTAALRQFEMLGSYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAP 137 (300)
T ss_pred CCEEEEcCCCchhhHHHHHHHHHHHCCCceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHhCCCC
Confidence 5666665554 3344556677788854432 234678888888888888776 5566666666 799
Q ss_pred EEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccC---CCceEEEEEEEeCCCcEEEEeeeeecc
Q 013241 134 VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ---NPRHIEFQVLADKYGNVVHFGERDCSI 210 (447)
Q Consensus 134 vVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~---G~~ei~v~vl~d~~g~vv~l~~r~~s~ 210 (447)
+|+||..|++|+|++++++.+++...++..... +..+++||||+ | +++++.++++ +++....|..+-
T Consensus 138 ~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~~~------~~~~lvQe~I~~~~g-~d~rv~vig~---~~~~~~~r~~~~ 207 (300)
T PRK10446 138 LVVKLVEGTQGIGVVLAETRQAAESVIDAFRGL------NAHILVQEYIKEAQG-CDIRCLVVGD---EVVAAIERRAKE 207 (300)
T ss_pred EEEEECCCCCcccEEEEcCHHHHHHHHHHHHhc------CCCEEEEeeeccCCC-ceEEEEEECC---EEEEEEEEecCC
Confidence 999999999999999999999988877754322 36799999995 5 8999998843 555554443321
Q ss_pred ccccceee---EecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCH
Q 013241 211 QRRNQKLL---EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDL 287 (447)
Q Consensus 211 ~~~~~k~~---~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl 287 (447)
.....++. ...|.. + .+++.+.+.++++++|+. +++|||+++++| +||+|||++++. ..++.++|+|+
T Consensus 208 ~~~~~n~~~g~~~~~~~-l----~~~~~~~a~~a~~alg~~-~~gvD~~~~~~g-~~vlEvN~~pg~--~~~~~~~g~~~ 278 (300)
T PRK10446 208 GDFRSNLHRGGAASVAS-I----TPQEREIAIKAARTMALD-VAGVDILRANRG-PLVMEVNASPGL--EGIEKTTGIDI 278 (300)
T ss_pred CchhheeccCCeeccCC-C----CHHHHHHHHHHHHHhCCC-EEEEEEEEcCCC-cEEEEEECCCCh--hhhHHHHCcCH
Confidence 11111111 111222 3 455779999999999996 999999999878 899999999864 34578899999
Q ss_pred HHHHHHHHcC
Q 013241 288 IEEQIHVAMG 297 (447)
Q Consensus 288 ~~~~i~~a~G 297 (447)
.+.+++....
T Consensus 279 ~~~~~~~i~~ 288 (300)
T PRK10446 279 AGKMIRWIER 288 (300)
T ss_pred HHHHHHHHHH
Confidence 9999987754
No 67
>PRK06849 hypothetical protein; Provisional
Probab=99.82 E-value=6.6e-19 Score=180.69 Aligned_cols=193 Identities=13% Similarity=0.127 Sum_probs=134.0
Q ss_pred CcEEEEecCc-HHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH-----------------------------
Q 013241 71 QEKILVANRG-EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------------------------- 120 (447)
Q Consensus 71 ~~kvLianrg-eia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------------------------- 120 (447)
.++|||.+.+ .+++.++|.+++.|+.++.+.+..+....+.+..++.+.+
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~vIP~ 83 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLLIPT 83 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 4789998855 5799999999999999988866554433333333322210
Q ss_pred ---------------------------------------------------------HHHHHHhhhh-CCcEEEEeCCCC
Q 013241 121 ---------------------------------------------------------EEAVKLADEL-GFPVMIKATAGG 142 (447)
Q Consensus 121 ---------------------------------------------------------~e~~~~~~~i-g~PvVvKP~~g~ 142 (447)
+++.++..+. +||+|+||..|+
T Consensus 84 ~e~~~~~a~~~~~l~~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~~v~~~~~l~~~~~~~~~~P~vlKP~~~~ 163 (389)
T PRK06849 84 CEEVFYLSHAKEELSAYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYLITDPEAIRNFMFKTPHTPYVLKPIYSR 163 (389)
T ss_pred ChHHHhHHhhhhhhcCCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHhhcCCCCcEEEEeCccc
Confidence 5566655555 899999999999
Q ss_pred CCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecC
Q 013241 143 GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAP 222 (447)
Q Consensus 143 Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P 222 (447)
||.|+.++.+.+++..... ....++++||||+| .++++..+.. +|+++....................|
T Consensus 164 ~~~~v~~~~~~~~l~~~~~---------~~~~~~ivQe~I~G-~e~~~~~~~~-~G~v~~~~~~~~~~~~~~~~~~~~~~ 232 (389)
T PRK06849 164 FVRRVDLLPKEAALKELPI---------SKDNPWVMQEFIQG-KEYCSYSIVR-SGELRAHSCYKPEYCAGSGAQIAFQP 232 (389)
T ss_pred CCCeEEEecCHHHhccccc---------CCCCCeEEEEEecC-CeEEEEEEEE-CCEEEEEEEeeccccCCCCceeEeEE
Confidence 9999999988554332110 11357999999999 7887777764 46766543211100000000111111
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhh
Q 013241 223 SPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTE 280 (447)
Q Consensus 223 ~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e 280 (447)
...++|.+.+.++++++||+|.+++||+++++|++|+||||||++++.+++.
T Consensus 233 ------~~~~~l~~~~~~~~~~l~~~G~~~~df~~~~~g~~~~iEiNpR~~~g~~l~~ 284 (389)
T PRK06849 233 ------INHPRIEEFVTHFVKELNYTGQISFDFIETENGDAYPIECNPRTTSGLHLFD 284 (389)
T ss_pred ------CCcHHHHHHHHHHHHhcCceeEEEEEEEECCCCCEEEEEecCCCCceeEEcC
Confidence 1235788999999999999999999999998899999999999998877654
No 68
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.80 E-value=3.5e-18 Score=167.36 Aligned_cols=201 Identities=26% Similarity=0.385 Sum_probs=140.1
Q ss_pred HHHHHHHHHHcCCCeeE----EEeccChhhHHHHHhccccCH---------HHHHHHhhhhCCcEEEEeCCCCCCcCeEE
Q 013241 83 AVRVIRTAHEMGIPCVA----VYSTIDKDALHVKLADESVCI---------EEAVKLADELGFPVMIKATAGGGGRGMRL 149 (447)
Q Consensus 83 a~ri~r~~~~lGi~~va----v~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~ 149 (447)
...+...++.+|+++.. +..+.||..++..+.+.++++ +++.++.+.++||+|+||..|++|+|+++
T Consensus 61 ~~~~~~~le~~g~~~~n~~~~~~~~~dK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~~~P~vvKP~~g~~g~gv~~ 140 (280)
T TIGR02144 61 ALYSARLLEALGVPVINSSHVIEACGDKIFTYLKLAKAGVPTPRTYLAFDREAALKLAEALGYPVVLKPVIGSWGRLVAL 140 (280)
T ss_pred HHHHHHHHHHCCCcEECcHHHHHHHhhHHHHHHHHHHCCcCCCCeEeeCCHHHHHHHHHHcCCCEEEEECcCCCcCCEEE
Confidence 44556667777877642 224567777777777777766 56677777899999999999999999999
Q ss_pred ECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCC-CceEEEEEEEeCCCcEEEEeeeeecccccccee-eEecCCCCCC
Q 013241 150 AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-PRHIEFQVLADKYGNVVHFGERDCSIQRRNQKL-LEEAPSPALT 227 (447)
Q Consensus 150 v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G-~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~-~~~~P~~~l~ 227 (447)
+++.+++.++++..... ....+..+++|+||++ ++++++.++++ +..+...|...-.+.+... ....|.. ++
T Consensus 141 v~~~~~l~~~~~~~~~~--~~~~~~~~ivQefI~~~~~d~~v~vig~---~~~~~~~r~~~~~~~~~~~g~~~~~~~-~~ 214 (280)
T TIGR02144 141 IRDKDELESLLEHKEVL--GGSQHKLFYIQEYINKPGRDIRVFVIGD---EAIAAIYRYSNHWRTNTARGGKAEPCP-LD 214 (280)
T ss_pred ECCHHHHHHHHHHHHhh--cCCcCCeEEEEcccCCCCCceEEEEECC---EEEEEEEEcCCchhhhhhcCCceeccC-CC
Confidence 99999998876532111 0012357999999986 47888888743 3332212211101111111 1122332 44
Q ss_pred HHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHc
Q 013241 228 PELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAM 296 (447)
Q Consensus 228 ~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~ 296 (447)
+ ++.+.+.++++++|+ |+++|||+++++|++||+|+|+|++... ++..+|+|+.+.+++.+.
T Consensus 215 ~----~~~~~a~~~~~~lg~-~~~~vD~~~~~~g~~~v~EvN~~p~~~~--~~~~~g~~~~~~~~~~~~ 276 (280)
T TIGR02144 215 E----EVEELAVKAAEAVGG-GVVAIDIFESKERGLLVNEVNHVPEFKN--SVRVTGVNVAGEILEYAV 276 (280)
T ss_pred H----HHHHHHHHHHHHhCC-CeEEEEEEEcCCCCEEEEEEeCCcchhh--hhHhhCCCHHHHHHHHHH
Confidence 3 567899999999997 6999999999887899999999997643 456889999999998764
No 69
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.80 E-value=3.5e-18 Score=169.30 Aligned_cols=199 Identities=16% Similarity=0.156 Sum_probs=142.5
Q ss_pred EEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCC--CcCeEEECCHHHHHHHHHHHHHHHHH-hcCCCcE
Q 013241 100 VYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGG--GRGMRLAKEPDEFVKLLQQAKSEAAA-AFGNDGV 176 (447)
Q Consensus 100 v~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~G--g~Gv~~v~~~~el~~~~~~~~~~~~~-~~~~~~~ 176 (447)
|.+.+|+..++..+.+.+++........+++.+||||||..|.| |+|+++++|.+|+.....+......- .-+...+
T Consensus 121 wE~~~dKk~~yk~L~~aGI~~Pk~~~~p~eId~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~ 200 (366)
T PRK13277 121 WEERTGEKNYYWLLEKAGIPYPKLFKDPEEIDRPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNA 200 (366)
T ss_pred hhhccCHHHHHHHHHHcCCCCceeecCccccCccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccc
Confidence 33445555555566666665522222235778999999999999 99999999999998876654321000 0012456
Q ss_pred EEeeccCCCceEEEEEEEeC-CCcEEEEee--eeec----ccc---ccc---------eeeEecCCCCCCHHHHHHHHHH
Q 013241 177 YLEKYVQNPRHIEFQVLADK-YGNVVHFGE--RDCS----IQR---RNQ---------KLLEEAPSPALTPELRKAMGDA 237 (447)
Q Consensus 177 lvEefI~G~~ei~v~vl~d~-~g~vv~l~~--r~~s----~~~---~~~---------k~~~~~P~~~l~~~~~~~l~~~ 237 (447)
+|||||.| .++.++++.+. +|++..++. |.-+ +.+ +.| -.....|.. +.+.+.+++.+.
T Consensus 201 iIQEyI~G-~ey~~d~F~s~l~g~ve~l~id~R~esn~dg~~r~pa~~ql~~~~~p~~vv~G~~p~t-~rEslle~v~e~ 278 (366)
T PRK13277 201 RIEEYVIG-AHFNFNYFYSPIRDRLELLGIDRRIQSNLDGFVRLPAPQQLKLNEEPRYIEVGHEPAT-IRESLLEKVFEI 278 (366)
T ss_pred eeEeccCC-CEEEEEEEEeccCCcEEEEEEeeccccccccccccChhhhhhcccCCceEEEcCcccc-chHHHHHHHHHH
Confidence 79999999 89999999883 675554433 2111 000 101 122245554 777899999999
Q ss_pred HHHHHHHcC------CccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHH--HHcCCCCC
Q 013241 238 AVAAAASIG------YIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIH--VAMGGKLR 301 (447)
Q Consensus 238 a~~i~~alg------~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~--~a~G~~l~ 301 (447)
+.+++++++ +.|++++|+++++|+++|++|||||++|+.++. +..|.|+..++++ ..+|+++.
T Consensus 279 ger~v~a~~~~~~pg~iGpf~lQ~iv~~d~~~~V~EInpR~gGGtnl~-~~aGs~y~~l~~~~~ms~GrRIa 349 (366)
T PRK13277 279 GEKFVEATKELYPPGIIGPFTLQTIVTPDLDFVVYDVAPRIGGGTNVY-MGVGSPYSKLYFGKPMSTGRRIA 349 (366)
T ss_pred HHHHHHHhhhhcCcccccceEEEEEEcCCCcEEEEEEcCCcCCCccce-eecCCCcHHHHhcCccccCCcch
Confidence 999999976 679999999999889999999999999987765 5669999999998 88898875
No 70
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.79 E-value=7.2e-18 Score=154.48 Aligned_cols=169 Identities=24% Similarity=0.363 Sum_probs=128.9
Q ss_pred HHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcE-EEEeCCCCCCcCeEEECCHHHHHHHHHHHHH
Q 013241 87 IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPV-MIKATAGGGGRGMRLAKEPDEFVKLLQQAKS 165 (447)
Q Consensus 87 ~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~Pv-VvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~ 165 (447)
-+.++++||||+....+.|. +++.+++++.++|+ ||||..-.+|+||.++++.+|..++++++..
T Consensus 7 K~fm~~~~IPTa~~~~f~~~--------------~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~ 72 (194)
T PF01071_consen 7 KEFMKRYGIPTAKYKVFTDY--------------EEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREIFV 72 (194)
T ss_dssp HHHHHHTT-SB--EEEESSH--------------HHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCeeEECCH--------------HHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhcc
Confidence 35678999999999999999 99999999999999 9999999999999999999999999998875
Q ss_pred HHHHhcC--CCcEEEeeccCCCceEEEEEEEeCCCcEEEEe-eeeeccc-cc-----cceeeEecCCCCCCHHHHHHHHH
Q 013241 166 EAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG-ERDCSIQ-RR-----NQKLLEEAPSPALTPELRKAMGD 236 (447)
Q Consensus 166 ~~~~~~~--~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~-~r~~s~~-~~-----~~k~~~~~P~~~l~~~~~~~l~~ 236 (447)
. ..|+ ...++||||+.| .|+++.++.|+. +++.+. .+|..-. .. .......+|.+.+++++.+++.+
T Consensus 73 ~--~~fg~~~~~vvIEE~l~G-~E~S~~a~~dG~-~~~~lp~aqD~Kr~~dgd~GpnTGGMGa~sp~p~~~~~~~~~i~~ 148 (194)
T PF01071_consen 73 D--RKFGDAGSKVVIEEFLEG-EEVSLFALTDGK-NFVPLPPAQDHKRLFDGDTGPNTGGMGAYSPVPFITDELLEEIIE 148 (194)
T ss_dssp S--STTCCCGSSEEEEE---S-EEEEEEEEEESS-EEEEEEEBEEEEEEETTTEEEEESESEEEESTTTS-HHHHHHHHH
T ss_pred c--cccCCCCCcEEEEeccCC-eEEEEEEEEcCC-eEEECcchhccccccCCCCCCCCCCccceeecccCCHHHHHHHHH
Confidence 3 2454 478999999999 999999999987 455443 2332211 11 12245568988889888777765
Q ss_pred -HHHHHHHHc-----CCccEeEEEEEEecCCCEEEEEEeccCCC
Q 013241 237 -AAVAAAASI-----GYIGVGTVEFLLDERGSFYFMEMNTRIQV 274 (447)
Q Consensus 237 -~a~~i~~al-----g~~G~~~vEf~~d~~G~~~~iEiNpR~~g 274 (447)
+...+++.| .|+|+..+.++++++| +++||.|.|++.
T Consensus 149 ~I~~pt~~~l~~eg~~y~GvLy~glMlt~~G-p~vlEfN~RfGD 191 (194)
T PF01071_consen 149 EILEPTLKGLKKEGIPYRGVLYAGLMLTEDG-PKVLEFNVRFGD 191 (194)
T ss_dssp HTHHHHHHHHHHTT---EEEEEEEEEEETTE-EEEEEEESSGST
T ss_pred HHHHHHHHHHHhcCCCcceeeeeeeEEeCCC-cEEEEEeCCCCC
Confidence 555666555 6889999999999888 999999999974
No 71
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.78 E-value=1.9e-18 Score=171.09 Aligned_cols=219 Identities=19% Similarity=0.293 Sum_probs=157.1
Q ss_pred ccccccCCcccccccccccccCCCCccccCCCCCCccccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHH
Q 013241 31 QCSFMVGSRTVNFPRQVVAGVGGKLKRRCGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH 110 (447)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~ 110 (447)
-+..+|+.++|||.++ ...|++.+ |.|+ ..-+.++..|++++.........-..
T Consensus 78 ~iqg~le~~giPyvg~------------gv~~Sa~~----mdk~----------~~K~~~~~~g~~~a~~~~~~~~~~~~ 131 (317)
T COG1181 78 TIQGLLELLGIPYVGK------------GVLASAGA----MDKI----------VTKRLFKAEGLPVAPYVALTRDEYSS 131 (317)
T ss_pred hHHHHHHHhCCCEecC------------chhhhhhc----ccHH----------HHHHHHHHCCCCccceeeeecccchh
Confidence 3567888889999998 22222333 2322 23345667899988655443210000
Q ss_pred HHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEE
Q 013241 111 VKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEF 190 (447)
Q Consensus 111 ~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v 190 (447)
....+..+..+||++|||...+++.|+.++++.+|+..+++.+... +.++++|+|+.+ +|++|
T Consensus 132 ----------~~~e~~~~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~~~------d~~vl~e~~~~~-rei~v 194 (317)
T COG1181 132 ----------VIVEEVEEGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAFKY------DRDVLREQGITG-REIEV 194 (317)
T ss_pred ----------HHHHHhhcccCCCEEEEcCCccceeeEEEeeeccchHHHHHHHHHh------CCceeeccCCCc-ceEEE
Confidence 3345666789999999999999999999999999999987777665 589999999997 99999
Q ss_pred EEEEeCCCcEEEEee-----eeeccccccceee------EecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEec
Q 013241 191 QVLADKYGNVVHFGE-----RDCSIQRRNQKLL------EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE 259 (447)
Q Consensus 191 ~vl~d~~g~vv~l~~-----r~~s~~~~~~k~~------~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~ 259 (447)
.++.+.. ....++. ..-.+..+..|.. ...|+. +++++.+++.++|.++.+++|+.|.+.+||++++
T Consensus 195 ~vl~~~~-~~~~l~~~eI~~~~~~fydye~Ky~~~gg~~~~~pa~-lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~ 272 (317)
T COG1181 195 GVLGNDY-EEQALPLGEIPPKGEEFYDYEAKYLSTGGAQYDIPAG-LTDEIHEEIKELALRAYKALGCLGLARVDFFVDD 272 (317)
T ss_pred EecCCcc-cceecCceEEecCCCeEEeeeccccCCCCceeeCCCC-CCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEEC
Confidence 9998754 2222211 1112233333333 255665 9999999999999999999999999999999997
Q ss_pred -CCCEEEEEEeccCCCc----cchhhhhcCCCHHHHHHHH
Q 013241 260 -RGSFYFMEMNTRIQVE----HPVTEMISSVDLIEEQIHV 294 (447)
Q Consensus 260 -~G~~~~iEiNpR~~g~----~~v~e~~~GiDl~~~~i~~ 294 (447)
+|++|++|+|+.||-. .|..-...|+++......+
T Consensus 273 ~~g~~~l~EvNt~PG~t~~sl~P~~~~~~gi~~~~L~~~~ 312 (317)
T COG1181 273 DEGEFVLLEVNTNPGMTAMSLFPKAAAAAGISFAILVLRF 312 (317)
T ss_pred CCCCEEEEEEeCCCCCcccccchhhHHHcCCCHHHHHHHH
Confidence 7899999999999842 2344445677766665544
No 72
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.78 E-value=6.4e-19 Score=158.80 Aligned_cols=128 Identities=23% Similarity=0.387 Sum_probs=73.6
Q ss_pred hCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeec
Q 013241 130 LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS 209 (447)
Q Consensus 130 ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s 209 (447)
..+|+|+||.+|.||.|++++++.+++...... ..++||||+| .++++.++.++. ....++...-.
T Consensus 30 ~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~------------~~i~Qe~i~G-~~~Sv~~l~~~~-~~~~l~~~rq~ 95 (161)
T PF02655_consen 30 IDGPWVIKPRDGAGGEGIRIVDSEDELEEFLNK------------LRIVQEFIEG-EPYSVSFLASGG-GARLLGVNRQL 95 (161)
T ss_dssp -SSSEEEEESS-------B--SS--TTE-------------------EEEE---S-EEEEEEEEE-SS-SEEEEEEEEEE
T ss_pred cCCcEEEEeCCCCCCCCeEEECCchhhcccccc------------ceEEeeeeCC-EEeEEEEEEeCC-ceEEEEechHh
Confidence 478999999999999999999999987765432 2399999999 999999999865 44433322111
Q ss_pred ccc---ccceeeEecCCCCCCHHHHHHHHHHHHHHHHHc-CCccEeEEEEEEecCCCEEEEEEeccCCCc
Q 013241 210 IQR---RNQKLLEEAPSPALTPELRKAMGDAAVAAAASI-GYIGVGTVEFLLDERGSFYFMEMNTRIQVE 275 (447)
Q Consensus 210 ~~~---~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~al-g~~G~~~vEf~~d~~G~~~~iEiNpR~~g~ 275 (447)
+.. .........|.. .....++.+++.++++++ |+.|.++|||++++ +++|+||||||++++
T Consensus 96 i~~~~~~~~~~G~~~~~~---~~~~~~~~~~~~~i~~~l~gl~G~~giD~I~~~-~~~~viEINPR~t~S 161 (161)
T PF02655_consen 96 IGNDDGRFRYCGGIVPAD---TPLKEEIIELARRIAEALPGLRGYVGIDFILDD-GGPYVIEINPRFTGS 161 (161)
T ss_dssp EET----TEEEEEEES-------HHHHHHHHHHHHHTTSTT--EEEEEEEEESS--SEEEEEEESS--GG
T ss_pred hccccceeeecccccccC---CchHHHHHHHHHHHHHHcCCCeeeEeEEEEEeC-CcEEEEEEcCCCCCC
Confidence 111 112223334443 344889999999999999 99999999999987 569999999999863
No 73
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.77 E-value=7.2e-18 Score=169.30 Aligned_cols=201 Identities=18% Similarity=0.266 Sum_probs=145.7
Q ss_pred cEEEEecCcHHHHHHHHHHHHcCCCeeE----EEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCe
Q 013241 72 EKILVANRGEIAVRVIRTAHEMGIPCVA----VYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGM 147 (447)
Q Consensus 72 ~kvLianrgeia~ri~r~~~~lGi~~va----v~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv 147 (447)
+-++|.+..+.+.--+..+.++|+++.. .....||..++..+.+.++++.......++++||+||||..|.||+|+
T Consensus 86 ~~iiIp~gs~v~y~~~d~l~~~~~p~~gn~~~l~~e~dK~~~k~~L~~aGIp~p~~~~~~~~i~~PvIVKp~~g~ggkGv 165 (358)
T PRK13278 86 NAILIPHGSFVAYLGLENVEKFKVPMFGNREILRWEADRDKERKLLEEAGIRIPRKYESPEDIDRPVIVKLPGAKGGRGY 165 (358)
T ss_pred CcEEEeCCCcceeecHHHHHHCCCCcCCCHHHHHHhcCHHHHHHHHHHcCCCCCCEeCCHHHcCCCEEEEeCCCCCCCCe
Confidence 5568888777777666666578887432 225678988999999998887332222345689999999999999999
Q ss_pred EEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeC-CCcEE--EEeeeeecc----cc---c----
Q 013241 148 RLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK-YGNVV--HFGERDCSI----QR---R---- 213 (447)
Q Consensus 148 ~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~-~g~vv--~l~~r~~s~----~~---~---- 213 (447)
++|++.+|+.++++.+.+...-.. .+.++|||||.| .+++++++... +|++- .+..|.-+- .+ .
T Consensus 166 ~i~~s~~El~~~~~~l~~~~~~~~-~~~~iIEEfI~G-~e~sv~~f~s~~~~~~e~l~id~r~~~~~d~~~r~p~~~~~~ 243 (358)
T PRK13278 166 FIAKSPEEFKEKIDKLIERGLITE-VEEAIIQEYVVG-VPYYFHYFYSPIKNRLELLGIDRRYESNIDGLVRIPAKDQLE 243 (358)
T ss_pred EEeCCHHHHHHHHHHHHhccccCC-CCeEEEEecCCC-cEEEEEEEEeccCCeEEEEeeceeeeecccceeeccchhhhh
Confidence 999999999998888654211011 478999999999 89999999752 34433 332332220 01 0
Q ss_pred -----cceeeEecCCCCCCHHHHHHHHHHHHHHHHH----c--CCccEeEEEEEEecCCCEEEEEEeccCCCc
Q 013241 214 -----NQKLLEEAPSPALTPELRKAMGDAAVAAAAS----I--GYIGVGTVEFLLDERGSFYFMEMNTRIQVE 275 (447)
Q Consensus 214 -----~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~a----l--g~~G~~~vEf~~d~~G~~~~iEiNpR~~g~ 275 (447)
..-.....|+. +.+.+..++.+.+.+++++ + |..|++++|+++++++.+|++|+|+|++|+
T Consensus 244 ~~~~p~~v~~Gn~P~~-~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~d~~~~V~Eis~R~~gg 315 (358)
T PRK13278 244 LGIDPTYVVVGNIPVV-LRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTDNLEIVVFEISARIVAG 315 (358)
T ss_pred cccCCceeEecceecc-chHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcCCCCEEEEEEeCcccCC
Confidence 01122334554 7788888999999998888 4 666999999999999999999999999664
No 74
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.76 E-value=3.1e-17 Score=151.85 Aligned_cols=178 Identities=27% Similarity=0.416 Sum_probs=104.0
Q ss_pred HHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhh-CCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHH
Q 013241 85 RVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADEL-GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQA 163 (447)
Q Consensus 85 ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~i-g~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~ 163 (447)
...+.+++.|++++.+....+. +++.++.+++ ++|+|+||..|+.|.||.++++.+++...++..
T Consensus 6 ~~~~~l~~~gipvP~t~~~~~~--------------~~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~ 71 (190)
T PF08443_consen 6 LTLQLLAKAGIPVPETRVTNSP--------------EEAKEFIEELGGFPVVIKPLRGSSGRGVFLINSPDELESLLDAF 71 (190)
T ss_dssp HHHHHHHHTT-----EEEESSH--------------HHHHHHHHHH--SSEEEE-SB-------EEEESHCHHHHHHH--
T ss_pred HHHHHHHHCCcCCCCEEEECCH--------------HHHHHHHHHhcCCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHH
Confidence 4567788999999999998888 8899999999 899999999999999999999999999887754
Q ss_pred HHHHHHhcCCCcEEEeeccCCC--ceEEEEEEEeCCCcEEEEeeeeecc--cccc-ceeeEecCCCCCCHHHHHHHHHHH
Q 013241 164 KSEAAAAFGNDGVYLEKYVQNP--RHIEFQVLADKYGNVVHFGERDCSI--QRRN-QKLLEEAPSPALTPELRKAMGDAA 238 (447)
Q Consensus 164 ~~~~~~~~~~~~~lvEefI~G~--~ei~v~vl~d~~g~vv~l~~r~~s~--~~~~-~k~~~~~P~~~l~~~~~~~l~~~a 238 (447)
... +..+++|+||+.. +++.|.+++ |+++....|...- .+.+ ..-....|. ++.+++.+.+
T Consensus 72 ~~~------~~~~~~Q~fI~~~~g~d~Rv~Vig---~~vv~a~~r~~~~~d~r~n~~~g~~~~~~-----~l~~e~~~~a 137 (190)
T PF08443_consen 72 KRL------ENPILVQEFIPKDGGRDLRVYVIG---GKVVGAYRRSSPEGDFRTNLSRGGKVEPY-----DLPEEIKELA 137 (190)
T ss_dssp ---------TTT-EEEE----SS---EEEEEET---TEEEEEEE------------------EE---------HHHHHHH
T ss_pred Hhc------cCcceEeccccCCCCcEEEEEEEC---CEEEEEEEEecCcccchhhhccCceEEEe-----cCCHHHHHHH
Confidence 332 4789999999974 489999883 3566544433111 1111 101111122 2345778899
Q ss_pred HHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHH
Q 013241 239 VAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHV 294 (447)
Q Consensus 239 ~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~ 294 (447)
.++++++|+ .++.||++.++ +.+||+|+|+.++ ...++..+|+|+.+.+++.
T Consensus 138 ~~~~~~lgl-~~~giDi~~~~-~~~~v~EvN~~~~--~~~~~~~~g~~i~~~i~~y 189 (190)
T PF08443_consen 138 LKAARALGL-DFAGIDILDTN-DGPYVLEVNPNPG--FRGIEEATGIDIAEEIAEY 189 (190)
T ss_dssp HHHHHHTT--SEEEEEEEEET-TEEEEEEEETT-----TTHHHHH---HHHHHHHH
T ss_pred HHHHHHhCC-CEEEEEEEecC-CCeEEEEecCCch--HhHHHHHHCcCHHHHHHhh
Confidence 999999998 59999965545 4599999999986 4457789999999998864
No 75
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.73 E-value=1.6e-16 Score=167.98 Aligned_cols=227 Identities=19% Similarity=0.275 Sum_probs=176.6
Q ss_pred ccCCCCCCccccCCc------EEEEe-----cCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHH
Q 013241 58 RCGGGGALKVTCRQE------KILVA-----NRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKL 126 (447)
Q Consensus 58 ~~~~g~~~~~~~~~~------kvLia-----nrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~ 126 (447)
+.++|||+..|..++ |||=. ++.|.--...|.+.+.|+.-+.|....+- +++.+|
T Consensus 998 iis~GGQ~pnNiA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~Wkelt~~--------------~eA~~F 1063 (1435)
T KOG0370|consen 998 IISVGGQLPNNIALKLHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAWKELTSL--------------EEAKKF 1063 (1435)
T ss_pred EEEecCcCcchhhhHhHhcCCeEecCChHhhhhhhhHHHHHHHHHHcCCCchhhhhhccH--------------HHHHHH
Confidence 367888888776543 44422 23344444555666666666666555555 999999
Q ss_pred hhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeee
Q 013241 127 ADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGER 206 (447)
Q Consensus 127 ~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r 206 (447)
++++||||+|.|.+--+|.-|-++++++||+..++++..-+ .+.++++.+||+|++|++++.++. +|+++.....
T Consensus 1064 ~~~VgYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~A~~vs----~dhPVVisKfie~AkEidvDAVa~-~G~~~~haiS 1138 (1435)
T KOG0370|consen 1064 AEKVGYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQASAVS----PDHPVVISKFIEGAKEIDVDAVAS-DGKVLVHAIS 1138 (1435)
T ss_pred HHhcCCceEecccceecchhhhhhhcHHHHHHHHHHHhhcC----CCCCEEhHHhhcccceechhhhcc-CCeEEEEehh
Confidence 99999999999999999999999999999999999887654 468999999999999999999975 4565543211
Q ss_pred e--eccccccceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcC
Q 013241 207 D--CSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISS 284 (447)
Q Consensus 207 ~--~s~~~~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~G 284 (447)
+ ..-.-+...-.-..|+..++++..+++.+++.++++++.+.|+++++|+... +++.+||+|-|.+.+.|+.....|
T Consensus 1139 EHvEnAGVHSGDAtlv~Ppq~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~k~-n~lkVIECN~RaSRSFPFvSKtlg 1217 (1435)
T KOG0370|consen 1139 EHVENAGVHSGDATLVLPPQDLSADTLERIKDIAAKVAKALKITGPFNMQIIAKD-NELKVIECNVRASRSFPFVSKTLG 1217 (1435)
T ss_pred hhhhcccccCCceeEeCCchhcCHHHHHHHHHHHHHHHHHhcccCCceEEEEecC-CeEEEEEeeeeeeccccceehhcC
Confidence 1 0001111122223577779999999999999999999999999999999865 579999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCCCCc
Q 013241 285 VDLIEEQIHVAMGGKLRYKQ 304 (447)
Q Consensus 285 iDl~~~~i~~a~G~~l~~~~ 304 (447)
+|+++...+..+|.+++...
T Consensus 1218 vdfi~~At~~i~g~~~~~~~ 1237 (1435)
T KOG0370|consen 1218 VDFIALATRAIMGVPVPPDL 1237 (1435)
T ss_pred chHHHHHHHHHhCCCCCCcc
Confidence 99999999999998875443
No 76
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=99.72 E-value=1.4e-15 Score=154.84 Aligned_cols=290 Identities=21% Similarity=0.253 Sum_probs=195.8
Q ss_pred HHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhC-CcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHH
Q 013241 88 RTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELG-FPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSE 166 (447)
Q Consensus 88 r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig-~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~ 166 (447)
+.+.++||||..+.+..|. +++..+.+..+ .++|||+..-..|+||.+..+.+|..++++++...
T Consensus 114 ~fm~r~~IPTA~y~~ft~~--------------e~a~sfi~~~~~~~~ViKAdGLAAGKGViv~~~~~EA~eAv~sIl~~ 179 (788)
T KOG0237|consen 114 DFMHRHNIPTAKYKTFTDP--------------EEAKSFIQSATDKALVIKADGLAAGKGVIVAKSKEEAFEAVDSILVK 179 (788)
T ss_pred HHHHhcCCCcceeeeeCCH--------------HHHHHHHHhCCCcceEEeecccccCCceEeeccHHHHHHHHHHHHhh
Confidence 3455666666666666666 89999999988 46899999999999999999999999999988754
Q ss_pred HHHhcC--CCcEEEeeccCCCceEEEEEEEeCCCcEEEEeee-eec------cccccceeeEecCCCCCCHHHHHHHHHH
Q 013241 167 AAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGER-DCS------IQRRNQKLLEEAPSPALTPELRKAMGDA 237 (447)
Q Consensus 167 ~~~~~~--~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r-~~s------~~~~~~k~~~~~P~~~l~~~~~~~l~~~ 237 (447)
. .|| ...++|||+++| .|+++-.+.|+. .+..+... |-. ...+..-..-.+|+|..++++.+.+.+.
T Consensus 180 ~--~fg~AG~tvViEE~LEG-eEvS~laftDG~-s~~~mp~aQDHKRl~dgD~GpNTGgmGaY~paPv~s~~ll~~v~~~ 255 (788)
T KOG0237|consen 180 K--VFGSAGKTVVIEELLEG-EEVSFLAFTDGY-SVRPLPPAQDHKRLGDGDTGPNTGGMGAYAPAPVASPKLLDTVQST 255 (788)
T ss_pred h--hhccccceEehhhhcCc-ceEEEEEEecCc-ccccCCcccchhhhcCCCCCCCCCCccccccCCccCHHHHHHHHHH
Confidence 3 344 478999999999 999999999976 44443221 100 0011112334578988888776655443
Q ss_pred H-HHHHHH-----cCCccEeEEEEEEecCCCEEEEEEeccCCC-ccchhhhhcCCCHHHHHHHHHcCCCCCCCccccccc
Q 013241 238 A-VAAAAS-----IGYIGVGTVEFLLDERGSFYFMEMNTRIQV-EHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQ 310 (447)
Q Consensus 238 a-~~i~~a-----lg~~G~~~vEf~~d~~G~~~~iEiNpR~~g-~~~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~ 310 (447)
. .+.++- +.|.|+...-++++++| +.++|.|.|++. |..++-....-||++.++..+.|+- ..-++.+.
T Consensus 256 I~~~Tv~Gm~~eg~~y~GVLfaGlMl~k~~-P~vLEfN~RFGDPEtQv~l~lLesDL~evi~a~~~~~L---~~~~i~w~ 331 (788)
T KOG0237|consen 256 IIEPTVDGMAEEGIPYVGVLFAGLMLTKDG-PKVLEFNVRFGDPETQVLLPLLESDLAEVILACCNGRL---DTVDIVWS 331 (788)
T ss_pred HhhHhhhHHHhcCCceeeEEeeeeEEecCC-ccEEEEecccCCchhhhhHHHHHhHHHHHHHHHhhCCc---cccCcccc
Confidence 3 333333 35669999999999988 999999999987 5566666667799999998888742 22223333
Q ss_pred eeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEe---eeecCCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhh
Q 013241 311 GHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMD---SHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALN 387 (447)
Q Consensus 311 g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d---~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~ 387 (447)
.+.....+.|...+.+-.-....|+.+..+..|+.++. +.++.+..++. +.++-.|.+.++|.++|.++++.+.+
T Consensus 332 ~~sa~~VV~as~gYP~sy~KG~~It~~~~~~~~~~rVFHAGTs~~ss~vvTN--GGRVLsVTA~~~~L~sA~e~Ayk~v~ 409 (788)
T KOG0237|consen 332 KKSAVTVVMASGGYPGSYTKGSIITGLPEADRPGTRVFHAGTSLDSSNVVTN--GGRVLSVTATGDDLESAAETAYKAVQ 409 (788)
T ss_pred ccceEEEEEecCCCCCCCcCCcccccCcccCCCcceEEeccccccccceEec--CceEEEEEecCchHHHHHHHHHHHhe
Confidence 34444455554322111111233444433444566653 23444433332 34588899999999999999999999
Q ss_pred ccEEec--cccCHHHH
Q 013241 388 DTIITG--VPTTIEYH 401 (447)
Q Consensus 388 ~~~i~G--~~tn~~~~ 401 (447)
.+.+.| ..+.+.|.
T Consensus 410 ~I~Fsg~~yRkDI~~r 425 (788)
T KOG0237|consen 410 VISFSGKFYRKDIAWR 425 (788)
T ss_pred EEeeccccccchhhhh
Confidence 999987 34554443
No 77
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=6.1e-15 Score=146.45 Aligned_cols=199 Identities=27% Similarity=0.406 Sum_probs=141.8
Q ss_pred HHHHHHHHHHcCCCeeE----EEeccChhhHHHHHhccccCH---------HHHHHHh-hhhCCcEEEEeCCCCCCcCeE
Q 013241 83 AVRVIRTAHEMGIPCVA----VYSTIDKDALHVKLADESVCI---------EEAVKLA-DELGFPVMIKATAGGGGRGMR 148 (447)
Q Consensus 83 a~ri~r~~~~lGi~~va----v~~~~dk~~~~~~lad~~v~i---------~e~~~~~-~~ig~PvVvKP~~g~Gg~Gv~ 148 (447)
+.++++.++..|++++. +..+.||......++..++++ +++..+. +.+|||+|+||.+|++|+||+
T Consensus 93 ~~~~~~~~E~~G~~viN~p~~i~~~~nK~~~~~~l~~~~ipvP~T~i~~~~~~~~~~~~~~~g~pvVlKp~~Gs~G~gV~ 172 (318)
T COG0189 93 ATRFLRLAERKGVPVINDPQSIRRCRNKLYTTQLLAKAGIPVPPTLITRDPDEAAEFVAEHLGFPVVLKPLDGSGGRGVF 172 (318)
T ss_pred HHHHHHHHHHcCCeEECCHHHHHhhhhHHHHHHHHHhcCCCCCCEEEEcCHHHHHHHHHHhcCCCEEEeeCCCCCccceE
Confidence 78889999999998874 667889999999999998866 4555555 456899999999999999999
Q ss_pred EECCHH-HHHHHHHHHHHHHHHhcCCCcEEEeeccCCCc-eEEEEEEEeCCCcEEEEe--eeeec--cccccceeeEecC
Q 013241 149 LAKEPD-EFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPR-HIEFQVLADKYGNVVHFG--ERDCS--IQRRNQKLLEEAP 222 (447)
Q Consensus 149 ~v~~~~-el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~-ei~v~vl~d~~g~vv~l~--~r~~s--~~~~~~k~~~~~P 222 (447)
+|++.+ ++.+.++...... ...+|+||||+-+. .....++.| +.++..+ .|.+. -.+.+......+.
T Consensus 173 ~v~~~d~~l~~~~e~~~~~~-----~~~~ivQeyi~~~~~~~rrivv~~--~~~~~~y~~~R~~~~~~~R~N~a~Gg~~e 245 (318)
T COG0189 173 LVEDADPELLSLLETLTQEG-----RKLIIVQEYIPKAKRDDRRVLVGG--GEVVAIYALARIPASGDFRSNLARGGRAE 245 (318)
T ss_pred EecCCChhHHHHHHHHhccc-----cceEehhhhcCcccCCcEEEEEeC--CEEeEEeeeccccCCCCceeecccccccc
Confidence 999999 8887777655431 24699999999754 455555544 3444432 11110 1111111111122
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHH
Q 013241 223 SPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVA 295 (447)
Q Consensus 223 ~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a 295 (447)
...++ +++++.|.+++.+||. ++++||++.+++| +|++|+|..|.+-+. ++..+|+|....+++..
T Consensus 246 ~~~l~----~e~~elA~kaa~~lGl-~~~GVDiie~~~g-~~V~EVN~sP~~~~~-i~~~~g~~~~~~~~~~i 311 (318)
T COG0189 246 PCELT----EEEEELAVKAAPALGL-GLVGVDIIEDKDG-LYVTEVNVSPTGKGE-IERVTGVNIAGLIIDAI 311 (318)
T ss_pred ccCCC----HHHHHHHHHHHHHhCC-eEEEEEEEecCCC-cEEEEEeCCCccccc-hhhhcCCchHHHHHHHH
Confidence 22245 4556999999999997 6999999999877 999999997655433 45677888888877654
No 78
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.61 E-value=1.2e-14 Score=159.47 Aligned_cols=203 Identities=23% Similarity=0.351 Sum_probs=146.3
Q ss_pred HHHHHHHHHHcCCCeeE------------------------------EEeccChhhHHHHHhccccCH---------HHH
Q 013241 83 AVRVIRTAHEMGIPCVA------------------------------VYSTIDKDALHVKLADESVCI---------EEA 123 (447)
Q Consensus 83 a~ri~r~~~~lGi~~va------------------------------v~~~~dk~~~~~~lad~~v~i---------~e~ 123 (447)
...|+++|++.|++... +..+.||..++..+.+.++++ +++
T Consensus 162 t~~I~~~A~~~gi~~~~l~~~~~v~lgyG~~~~~i~~~~~~~~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~~v~s~~~a 241 (727)
T PRK14016 162 TAAIVDAAEARGIPYIRLGDGSLVQLGYGKYQRRIQAAETDQTSAIAVDIACDKELTKRLLAAAGVPVPEGRVVTSAEDA 241 (727)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCeEecCCcHHHHHHHHhcCCCCcHHHHHHhCCHHHHHHHHHHCCcCCCCeeEeCCHHHH
Confidence 34778888888887621 123578888888899888887 778
Q ss_pred HHHhhhhCCcEEEEeCCCCCCcCeEE-ECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEE
Q 013241 124 VKLADELGFPVMIKATAGGGGRGMRL-AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVH 202 (447)
Q Consensus 124 ~~~~~~ig~PvVvKP~~g~Gg~Gv~~-v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~ 202 (447)
.++++++|||+|+||..|++|+||++ +++.+|+.++++.+... ...++|||||+| +++++.+++ |+++.
T Consensus 242 ~~~a~~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a~~~------~~~viVEe~I~G-~d~Rv~Vvg---g~vva 311 (727)
T PRK14016 242 WEAAEEIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVASKE------SSDVIVERYIPG-KDHRLLVVG---GKLVA 311 (727)
T ss_pred HHHHHHcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHHHHHh------CCeEEEEEecCC-ceEEEEEEC---CEEEE
Confidence 88899999999999999999999998 99999999999887654 278999999999 888887762 35555
Q ss_pred Eeeeeecc-------------c------ccc----------------------------------ceee-E-------ec
Q 013241 203 FGERDCSI-------------Q------RRN----------------------------------QKLL-E-------EA 221 (447)
Q Consensus 203 l~~r~~s~-------------~------~~~----------------------------------~k~~-~-------~~ 221 (447)
...|.... . ++. +++. . .+
T Consensus 312 a~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg 391 (727)
T PRK14016 312 AARREPPHVIGDGKHTIRELIEIVNQDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGG 391 (727)
T ss_pred EEEecCcEEecCCcccHHHHHHHhhcCccccccccCcccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCC
Confidence 44432110 0 000 0000 0 00
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEec------CCCEEEEEEeccCCCcc-chhhhhcCCCHHHHHHHH
Q 013241 222 PSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE------RGSFYFMEMNTRIQVEH-PVTEMISSVDLIEEQIHV 294 (447)
Q Consensus 222 P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~------~G~~~~iEiNpR~~g~~-~v~e~~~GiDl~~~~i~~ 294 (447)
-+...++.+.+++.+.|.++++.+|+ +++.||++.++ +....++|+|..++... .......+.|....++..
T Consensus 392 ~~~d~td~i~~~~~~~a~~aa~~~gl-~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi~~~~~p~~g~~r~v~~~Iid~ 470 (727)
T PRK14016 392 TAIDVTDEVHPENAAIAERAAKIIGL-DIAGVDVVCEDISKPLEEQGGAIVEVNAAPGLRMHLAPSEGKPRNVGEAIVDM 470 (727)
T ss_pred eeEecccccCHHHHHHHHHHHHhcCC-CEEEEEEEecCcccccccCCcEEEEEcCCcchhhccCCCCCcchhHHHHHHHH
Confidence 11124567888999999999999999 59999999863 12379999999998642 222234567777777766
Q ss_pred Hc
Q 013241 295 AM 296 (447)
Q Consensus 295 a~ 296 (447)
..
T Consensus 471 L~ 472 (727)
T PRK14016 471 LF 472 (727)
T ss_pred hc
Confidence 54
No 79
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.61 E-value=4.7e-15 Score=157.87 Aligned_cols=182 Identities=21% Similarity=0.332 Sum_probs=127.0
Q ss_pred HHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEE-ECCHHHHHHHHHHHHH
Q 013241 87 IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRL-AKEPDEFVKLLQQAKS 165 (447)
Q Consensus 87 ~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~-v~~~~el~~~~~~~~~ 165 (447)
.+.+++.|+|++......+. +++.++++++| |+||||..|++|+||++ +++.+++.++++.+..
T Consensus 302 k~lL~~aGIpVP~~~~~~~~--------------~~~~~~~~~~G-~vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a~~ 366 (547)
T TIGR03103 302 RRLVSEAGLQVPEQQLAGNG--------------EAVEAFLAEHG-AVVVKPVRGEQGKGISVDVRTPDDLEAAIAKARQ 366 (547)
T ss_pred HHHHHHcCcCCCCEEEECCH--------------HHHHHHHHHhC-CEEEEECCCCCCcCeEEecCCHHHHHHHHHHHHh
Confidence 45566778887777666665 77888888898 69999999999999997 9999999999988765
Q ss_pred HHHHhcCCCcEEEeeccCCCceEEEEEE----------------EeCCCcEEEEeeeeeccccc----------------
Q 013241 166 EAAAAFGNDGVYLEKYVQNPRHIEFQVL----------------ADKYGNVVHFGERDCSIQRR---------------- 213 (447)
Q Consensus 166 ~~~~~~~~~~~lvEefI~G~~ei~v~vl----------------~d~~g~vv~l~~r~~s~~~~---------------- 213 (447)
. ...+|||+||+| .++.+.|+ +|+++++.++.++...-..+
T Consensus 367 ~------~~~vlvEe~i~G-~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~ 439 (547)
T TIGR03103 367 F------CDRVLLERYVPG-EDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETER 439 (547)
T ss_pred c------CCcEEEEEeccC-CeEEEEEECCEEEEEEEecCcEEEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHH
Confidence 4 268999999999 77766555 34333333322221100000
Q ss_pred ---------------ccee--------eEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEec--CCCEEEEEE
Q 013241 214 ---------------NQKL--------LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE--RGSFYFMEM 268 (447)
Q Consensus 214 ---------------~~k~--------~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~--~G~~~~iEi 268 (447)
.+.+ .....+..+++++.+++.++|.++++++|+. ++.||+++++ ...+.|||+
T Consensus 440 ~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~~~~~~~~~A~~aa~~~gl~-~~GvD~i~~~~~~p~~~iiEv 518 (547)
T TIGR03103 440 CLAEAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARALDIP-VVGIDFLVPDVTGPDYVIIEA 518 (547)
T ss_pred HHHHcCCCccccCCCCCEEEEecCCcccCCCeeEecccccCHHHHHHHHHHHHHhCCC-eEEEEEEeccCCCCCeEEEEe
Confidence 0000 0011122356778899999999999999995 9999999874 234699999
Q ss_pred eccCCCccchhhhhcCCCHHHHHHHHHc
Q 013241 269 NTRIQVEHPVTEMISSVDLIEEQIHVAM 296 (447)
Q Consensus 269 NpR~~g~~~v~e~~~GiDl~~~~i~~a~ 296 (447)
|.||+-..+ ..-|..+.+++...
T Consensus 519 N~~Pgl~~h-----~~~~~~~~~~d~lf 541 (547)
T TIGR03103 519 NERPGLANH-----EPQPTAERFIDLLF 541 (547)
T ss_pred cCCcccccc-----CCCchHHHHHHHhC
Confidence 999987522 13466677776653
No 80
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.57 E-value=3.6e-15 Score=141.06 Aligned_cols=185 Identities=24% Similarity=0.283 Sum_probs=129.6
Q ss_pred HHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCC-----CcCeEEECCHHHHHHHHH
Q 013241 87 IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGG-----GRGMRLAKEPDEFVKLLQ 161 (447)
Q Consensus 87 ~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~G-----g~Gv~~v~~~~el~~~~~ 161 (447)
.+.|.++|++.+..+...+ ++.....++-||+|+||-.|++ -...+.+.+.+|+..++.
T Consensus 119 Y~ra~elgl~~P~Ty~v~S----------------~~d~~~~el~FPvILKP~mgg~~~~~araKa~~a~d~ee~k~a~~ 182 (415)
T COG3919 119 YNRAEELGLPYPKTYLVNS----------------EIDTLVDELTFPVILKPGMGGSVHFEARAKAFTAADNEEMKLALH 182 (415)
T ss_pred HHHHHHhCCCCcceEEecc----------------hhhhhhhheeeeEEecCCCCCcceeehhhheeeccCHHHHHHHHH
Confidence 3455666666666655543 3344556788999999998884 344567789999999988
Q ss_pred HHHHHHHHhcCCCcEEEeeccCCCce--EEEEEEEeCCCcEEEEeeeeeccccccceeeEe----cCCCCCCHHHHHHHH
Q 013241 162 QAKSEAAAAFGNDGVYLEKYVQNPRH--IEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE----APSPALTPELRKAMG 235 (447)
Q Consensus 162 ~~~~~~~~~~~~~~~lvEefI~G~~e--i~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~----~P~~~l~~~~~~~l~ 235 (447)
.+..+. +.+.++|||||+|+.| ++...+.|+...+ .. |+-.+-.|.-... .-.. +.+ .+++.
T Consensus 183 ~a~eei----gpDnvvvQe~IPGGgE~qfsyaAlw~~g~pv-ae----ftarr~rqyPvdfgytst~ve-vvD--n~Q~i 250 (415)
T COG3919 183 RAYEEI----GPDNVVVQEFIPGGGENQFSYAALWDKGHPV-AE----FTARRLRQYPVDFGYTSTVVE-VVD--NQQVI 250 (415)
T ss_pred HHHHhc----CCCceEEEEecCCCCcccchHHHHHhCCCch-hh----hhcchhhcCCcccccccEEEE-ecC--cHHHH
Confidence 887664 6799999999999655 5555555644333 22 3322222211100 0000 122 56888
Q ss_pred HHHHHHHHHcCCccEeEEEEEEe-cCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCC
Q 013241 236 DAAVAAAASIGYIGVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKL 300 (447)
Q Consensus 236 ~~a~~i~~alg~~G~~~vEf~~d-~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l 300 (447)
++++++++.+++.|...+||.+| .||.+.++|||||++....+. .+.|+||-..+.+...+.+.
T Consensus 251 ~aar~~L~si~htGlvevefK~D~RDGs~KlldvNpRpw~wfgl~-taaG~nLg~~Lwa~~~~~~t 315 (415)
T COG3919 251 QAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVNPRPWRWFGLV-TAAGYNLGRYLWADRINNET 315 (415)
T ss_pred HHHHHHHHhhcccceEEEEEEecCCCCceeEEeecCCCcceeeEE-ecccccccceEEeeecCCcc
Confidence 99999999999999999999999 799999999999998654443 36699999998888877643
No 81
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.53 E-value=3.7e-13 Score=150.54 Aligned_cols=185 Identities=23% Similarity=0.334 Sum_probs=138.9
Q ss_pred HHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEE-ECCHHHHHHHHHHHHH
Q 013241 87 IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRL-AKEPDEFVKLLQQAKS 165 (447)
Q Consensus 87 ~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~-v~~~~el~~~~~~~~~ 165 (447)
.+.+++.|||++......+. +++.++++++|||+|+||..|++|+||.+ +++.+|+.++++.+..
T Consensus 218 k~lL~~~GIpvP~~~~~~s~--------------~ea~~~~~~ig~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a~~ 283 (864)
T TIGR02068 218 KEILSDAGVPVPEGTVVQSA--------------EDAWEAAQDLGYPVVIKPYDGNHGRGVTINILTRDEIESAYEAAVE 283 (864)
T ss_pred HHHHHHcCcCCCCEEEECCH--------------HHHHHHHHHcCCCEEEEECCCCCccCEEEEeCCHHHHHHHHHHHHh
Confidence 45678889999988888777 88888999999999999999999999998 9999999999988765
Q ss_pred HHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeecc-------------------cccc------------
Q 013241 166 EAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSI-------------------QRRN------------ 214 (447)
Q Consensus 166 ~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~-------------------~~~~------------ 214 (447)
. +..++||+||+| +|+++.+++ |+++....|.... .++.
T Consensus 284 ~------~~~vlVEefI~G-~e~rvlVv~---~~vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~i~~ 353 (864)
T TIGR02068 284 E------SSGVIVERFITG-RDHRLLVVG---GKVVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTKIRL 353 (864)
T ss_pred h------CCcEEEEEeccC-CEEEEEEEC---CEEEEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccccCC
Confidence 4 368999999999 999998773 3666654443211 0000
Q ss_pred ----------------------cee-e-------EecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEec-----
Q 013241 215 ----------------------QKL-L-------EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE----- 259 (447)
Q Consensus 215 ----------------------~k~-~-------~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~----- 259 (447)
+.+ + ...-+...++++.++..+.|.++++++|+. ++.||++..+
T Consensus 354 d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i~~~~~~~a~~aa~~~gl~-i~gvD~i~~di~~~~ 432 (864)
T TIGR02068 354 DSTARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENAATAVRAAKIIGLD-IAGVDIVTEDISRPL 432 (864)
T ss_pred CHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCceEecccccCHHHHHHHHHHHHHhCCC-eEEEEEEecCCCCCc
Confidence 000 0 001112246788889999999999999995 8899999852
Q ss_pred -CCCEEEEEEeccCCCc-cchhhhhcCCCHHHHHHHHHc
Q 013241 260 -RGSFYFMEMNTRIQVE-HPVTEMISSVDLIEEQIHVAM 296 (447)
Q Consensus 260 -~G~~~~iEiNpR~~g~-~~v~e~~~GiDl~~~~i~~a~ 296 (447)
.....++|+|+.|+-. |..-..-.+.|+...+++...
T Consensus 433 ~~~~~~iiEvN~~p~~~~h~~p~~g~~r~v~~~Il~~lf 471 (864)
T TIGR02068 433 RDTDGAIVEVNAAPGLRMHLAPSQGKPRNVARAIVDMLF 471 (864)
T ss_pred cccCcEEEEEcCCcchhhcccccCCCCeeHHHHHHHHhc
Confidence 2236899999999864 433334557888888888776
No 82
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.52 E-value=4e-14 Score=131.56 Aligned_cols=189 Identities=18% Similarity=0.211 Sum_probs=136.0
Q ss_pred HHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHH
Q 013241 85 RVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAK 164 (447)
Q Consensus 85 ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~ 164 (447)
-+-+.+..+|...-++..+.||..+...+.++ +..-+..+ ....+--.|+||++|.||.|+....+..++
T Consensus 94 i~E~~~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e-~~~~~~k~ViKp~dgCgge~i~~~~~~pd~-------- 163 (307)
T COG1821 94 IYEEYVENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTRE-WAEEPKKYVIKPADGCGGEGILFGRDFPDI-------- 163 (307)
T ss_pred HHHHHhHhhCCCHHHHhHhhhHHHHHHHHhhh-ccCCCccc-cccCCceEEecccccCCcceeeccCCCcch--------
Confidence 34455777899888999999999999888887 43322221 233455689999999999999998887653
Q ss_pred HHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeecccccccee-eEecCCCCCCHHHHHHHHHHHHHHHH
Q 013241 165 SEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKL-LEEAPSPALTPELRKAMGDAAVAAAA 243 (447)
Q Consensus 165 ~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~-~~~~P~~~l~~~~~~~l~~~a~~i~~ 243 (447)
.++||||+| .|.+|.+. ++. ++..+.-...-+.-...++ ....+++ .+.++.+++.+.|.++++
T Consensus 164 -----------~i~qEfIeG-~~lSVSL~-~GE-kv~pLsvNrQfi~~~~~~~~y~gg~~p-i~he~k~~~~~~Ai~aVe 228 (307)
T COG1821 164 -----------EIAQEFIEG-EHLSVSLS-VGE-KVLPLSVNRQFIIFAGSELVYNGGRTP-IDHELKREAFEEAIRAVE 228 (307)
T ss_pred -----------hhHHHhcCC-cceEEEEe-cCC-ccccceechhhhhhccceeeeccCcCC-CCcHHHHHHHHHHHHHHH
Confidence 578999999 99999944 443 3333322111011111122 2234555 778999999999999999
Q ss_pred HcC-CccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCC
Q 013241 244 SIG-YIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKL 300 (447)
Q Consensus 244 alg-~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l 300 (447)
.++ +.|..+||+++. | ++|++|||||+.-..--...+++-++.+.++.-..|.-+
T Consensus 229 ci~Gl~GYVGVDlVls-D-~pYvIEINpR~TTp~vg~sr~~~~sv~~LLl~~~~g~~~ 284 (307)
T COG1821 229 CIPGLNGYVGVDLVLS-D-EPYVIEINPRPTTPTVGLSRVTPESVAELLLEGPTGKVL 284 (307)
T ss_pred hhccccceeeEEEEec-C-CcEEEEecCCCCcceeeeeccccHHHHHHHhcCcccccc
Confidence 995 889999999997 4 599999999997654445567888888888887777654
No 83
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.50 E-value=7.6e-13 Score=143.27 Aligned_cols=182 Identities=19% Similarity=0.271 Sum_probs=126.6
Q ss_pred HHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhh-CCcEEEEeCCCCCCcCeEEECC---HHHHHHHHHHH
Q 013241 88 RTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADEL-GFPVMIKATAGGGGRGMRLAKE---PDEFVKLLQQA 163 (447)
Q Consensus 88 r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~i-g~PvVvKP~~g~Gg~Gv~~v~~---~~el~~~~~~~ 163 (447)
+.+++.|||++......+. +++.+....+ +||+||||.+|++|+||.++.+ .+++.+++..+
T Consensus 481 ~iL~~aGIPVP~g~~~~~~--------------~~a~~~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~~~eel~~Al~~A 546 (737)
T TIGR01435 481 KVLAEAGFRVPFGDEFSSQ--------------ALALEAFSLFENKAIVVKPKSTNYGLGITIFKNGFTLEDFQEALNIA 546 (737)
T ss_pred HHHHHcCcCCCCEEEECCH--------------HHHHHHHHHhcCCCEEEeeCCCCCcCCeEEecCcCCHHHHHHHHHHH
Confidence 4566779999887766665 5555555555 7999999999999999999876 77888888766
Q ss_pred HHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeee---------eccc----------ccc-------cee
Q 013241 164 KSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD---------CSIQ----------RRN-------QKL 217 (447)
Q Consensus 164 ~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~---------~s~~----------~~~-------~k~ 217 (447)
... +..++||+||+| +|+++.|+++ +++....|. -++. +|. .++
T Consensus 547 ~~~------~~~VLVEefI~G-~EyRv~VIg~---kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~pl~~I 616 (737)
T TIGR01435 547 FSE------DSSVIIEEFLPG-TEYRFFVLND---KVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKPLEKI 616 (737)
T ss_pred Hhc------CCeEEEEecccC-CEEEEEEECC---eEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCCcccc
Confidence 433 367999999999 9999999954 454433321 0000 000 000
Q ss_pred ---------------eEecC-------------------CCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecC---
Q 013241 218 ---------------LEEAP-------------------SPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDER--- 260 (447)
Q Consensus 218 ---------------~~~~P-------------------~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~--- 260 (447)
.+.-| +..+++.+++...++|+++++++|+. +++||+++.+-
T Consensus 617 ~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa~algl~-i~GVDii~~di~~p 695 (737)
T TIGR01435 617 TGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIATAVGAA-ICGVDLIIPDETIP 695 (737)
T ss_pred cchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEecCCCCC
Confidence 00001 12366788999999999999999997 99999998621
Q ss_pred -----CCEEEEEEeccCCCc-cchhhhhcCCCHHHHHHHH
Q 013241 261 -----GSFYFMEMNTRIQVE-HPVTEMISSVDLIEEQIHV 294 (447)
Q Consensus 261 -----G~~~~iEiNpR~~g~-~~v~e~~~GiDl~~~~i~~ 294 (447)
..+.+||+|++|+-. |..-..-.+.|+...+++.
T Consensus 696 ~~~~~~~~~iiEvN~~P~l~mH~~P~~G~~r~v~~~ild~ 735 (737)
T TIGR01435 696 DTDKHAIWGVIEANFNPAMHMHCFPYAGEKRRLTDKVIKF 735 (737)
T ss_pred ccccccceEEEEEcCCcchhhhcCCCCCCCcchHHHHHHh
Confidence 126799999999874 4433345566777766654
No 84
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.47 E-value=2.1e-12 Score=141.63 Aligned_cols=183 Identities=20% Similarity=0.269 Sum_probs=126.8
Q ss_pred HHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhh-hCCcEEEEeCCCCCCcCeEEE---CCHHHHHHHHHHH
Q 013241 88 RTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADE-LGFPVMIKATAGGGGRGMRLA---KEPDEFVKLLQQA 163 (447)
Q Consensus 88 r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~-ig~PvVvKP~~g~Gg~Gv~~v---~~~~el~~~~~~~ 163 (447)
+.+++.|||++......+. +++.+.... .|||+||||..|++|+||.++ ++.+++.++++.+
T Consensus 494 ~lL~~~GIpvP~~~~~~~~--------------e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A~~~a 559 (752)
T PRK02471 494 KILAEAGFPVPAGDEFTSL--------------EEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASLEDYEKALEIA 559 (752)
T ss_pred HHHHHCCcCCCCEEEEcCH--------------HHHHHHHHHhcCCCEEEEECCCCCcCCeEEecCcCCHHHHHHHHHHH
Confidence 5567778888877666665 666666665 489999999999999999986 4678888888776
Q ss_pred HHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeee---------ccc----cccc-------------ee
Q 013241 164 KSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC---------SIQ----RRNQ-------------KL 217 (447)
Q Consensus 164 ~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~---------s~~----~~~~-------------k~ 217 (447)
... +..++|||||+| +|++|.+++ |+++....|.. ++. ..+. ++
T Consensus 560 ~~~------~~~vlVEEfI~G-~E~Rv~Vig---gkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I 629 (752)
T PRK02471 560 FRE------DSSVLVEEFIVG-TEYRFFVLD---GKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKI 629 (752)
T ss_pred Hhc------CCcEEEEecccC-CEEEEEEEC---CEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCccccccccc
Confidence 432 367999999999 999998883 35554433311 000 0000 00
Q ss_pred ----------------eEecC-------------------CCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEec---
Q 013241 218 ----------------LEEAP-------------------SPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE--- 259 (447)
Q Consensus 218 ----------------~~~~P-------------------~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~--- 259 (447)
.+.-| +..+++.+++...+.|.++++++|+. +++||+++.+
T Consensus 630 ~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~aa~~igl~-~~GvDii~~di~~ 708 (752)
T PRK02471 630 QLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKAAKALGAK-ICGVDLIIPDLTQ 708 (752)
T ss_pred ccCHHHHHHHHHcCCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEeCCCcc
Confidence 00001 12366789999999999999999987 8889999863
Q ss_pred ---CC--CEEEEEEeccCCCc-cchhhhhcCCCHHHHHHHHH
Q 013241 260 ---RG--SFYFMEMNTRIQVE-HPVTEMISSVDLIEEQIHVA 295 (447)
Q Consensus 260 ---~G--~~~~iEiNpR~~g~-~~v~e~~~GiDl~~~~i~~a 295 (447)
.. ++.+||+|++++-. |..-..-...|+.+.+++..
T Consensus 709 p~~~~~~~~~IiEvN~~P~l~mH~~P~~G~~r~v~~~i~d~l 750 (752)
T PRK02471 709 PASPEHPNYGIIELNFNPAMYMHCFPYKGKGRRITPKILDKL 750 (752)
T ss_pred cccccCCCeEEEEecCCCchhhccCccCCCCcchHHHHHHHh
Confidence 11 47899999999864 43322344566777776654
No 85
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.31 E-value=2.8e-10 Score=112.40 Aligned_cols=193 Identities=17% Similarity=0.170 Sum_probs=114.2
Q ss_pred HHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCC-cEEEEeCCCCCCcCeEEECCHHH----------
Q 013241 87 IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGF-PVMIKATAGGGGRGMRLAKEPDE---------- 155 (447)
Q Consensus 87 ~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~-PvVvKP~~g~Gg~Gv~~v~~~~e---------- 155 (447)
...+++.|+|++..+.+.+...-. +++.+++. ++ |+|+||..|++|+||.++++.++
T Consensus 42 ~~lL~~aglpvP~T~~~~s~~~~~----------~~l~~~~~--~~~~VVVKPl~Gs~GrGI~~i~~~~~~~~~~~~~~~ 109 (317)
T TIGR02291 42 KIIAQAAGITVPELYGVIHNQAEV----------KTIHNIVK--DHPDFVIKPAQGSGGKGILVITSRKDGRYRKPSGAT 109 (317)
T ss_pred HHHHHHcCCCCCCEEEecCchhhH----------HHHHHHHc--cCCCEEEEECCCCCccCeEEEEeccccccccccccc
Confidence 566778899999877666552110 34444443 35 69999999999999999976544
Q ss_pred -----HHHHHHHHHHHHHHhcCC-CcEEEeeccCCC-----------ceEEEEEEEeCCCcEEEEeeeeec---ccccc-
Q 013241 156 -----FVKLLQQAKSEAAAAFGN-DGVYLEKYVQNP-----------RHIEFQVLADKYGNVVHFGERDCS---IQRRN- 214 (447)
Q Consensus 156 -----l~~~~~~~~~~~~~~~~~-~~~lvEefI~G~-----------~ei~v~vl~d~~g~vv~l~~r~~s---~~~~~- 214 (447)
+...+...........+. +.+++|+++... +.+.|.++.+. ++....|... ..+.+
T Consensus 110 ~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~~---~vaa~~R~~~~~~~~~tN~ 186 (317)
T TIGR02291 110 INKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKGY---PVMAMMRLPTRASDGKANL 186 (317)
T ss_pred cchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECCE---EEEEEEEccCccCCccccc
Confidence 333333222211111122 245665544432 46777777542 2222122110 01111
Q ss_pred ---ceee-------------------EecCC-----CCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEE
Q 013241 215 ---QKLL-------------------EEAPS-----PALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFME 267 (447)
Q Consensus 215 ---~k~~-------------------~~~P~-----~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iE 267 (447)
.... ..-|. ..+..+..+++.+.|.++.+++|+ |.+.+|+++|.++.++++|
T Consensus 187 ~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~-~~~GvDii~~~~~g~~VlE 265 (317)
T TIGR02291 187 HQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGL-GYMGVDMVLDKEEGPLVLE 265 (317)
T ss_pred ccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCC-CeEEEEEEEeCCCCEEEEE
Confidence 0000 00111 113335667899999999999998 8999999998666699999
Q ss_pred EeccCCCccchhhhhcCCCHHHHHHHHHc
Q 013241 268 MNTRIQVEHPVTEMISSVDLIEEQIHVAM 296 (447)
Q Consensus 268 iNpR~~g~~~v~e~~~GiDl~~~~i~~a~ 296 (447)
+|+.++-+ +......|++-.-..+...+
T Consensus 266 VN~~Pg~t-~~~a~~~Gl~~~~~~~~~~~ 293 (317)
T TIGR02291 266 LNARPGLA-IQIANGAGLLPRLKHIEARL 293 (317)
T ss_pred eCCCCCCC-HHHHHHCCCcHHHHHHHHhh
Confidence 99999866 34445557766655555543
No 86
>PRK12458 glutathione synthetase; Provisional
Probab=99.29 E-value=1.1e-10 Score=117.61 Aligned_cols=184 Identities=17% Similarity=0.182 Sum_probs=114.1
Q ss_pred HHcCCCee----EEEeccChhhHHHHHhccccCH-------HHHHHHhhhhCCc-EEEEeCCCCCCcCeEEECCHHH--H
Q 013241 91 HEMGIPCV----AVYSTIDKDALHVKLADESVCI-------EEAVKLADELGFP-VMIKATAGGGGRGMRLAKEPDE--F 156 (447)
Q Consensus 91 ~~lGi~~v----av~~~~dk~~~~~~lad~~v~i-------~e~~~~~~~ig~P-vVvKP~~g~Gg~Gv~~v~~~~e--l 156 (447)
+..|++++ .+..+.||..+.. +++..++. +++.++++++++| +|+||..|.||+|++++++.++ +
T Consensus 111 e~~g~~viN~p~~i~~~~dK~~~~~-l~~~~vP~T~v~~~~~~~~~~~~~~~~~pvVvKPl~G~gG~gV~~v~~~~~~~~ 189 (338)
T PRK12458 111 ARDGVLVVNDPDGLRIANNKLYFQS-FPEEVRPTTHISRNKEYIREFLEESPGDKMILKPLQGSGGQGVFLIEKSAQSNL 189 (338)
T ss_pred HhCCCeEecCHHHHHhccCHHHHHh-hccCCCCCEEEeCCHHHHHHHHHHcCCCeEEEEECCCCCccCeEEEecCChhhH
Confidence 44565543 2344566655532 33312221 6777888888765 9999999999999999987664 4
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEeeccCCC--ceEEEEEEEeCCCcEE------EEeeeeecc--ccccceee-EecCCCC
Q 013241 157 VKLLQQAKSEAAAAFGNDGVYLEKYVQNP--RHIEFQVLADKYGNVV------HFGERDCSI--QRRNQKLL-EEAPSPA 225 (447)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~lvEefI~G~--~ei~v~vl~d~~g~vv------~l~~r~~s~--~~~~~k~~-~~~P~~~ 225 (447)
...++.... ...+++|+||++. .++.+.++ +|+++ +...|...- .|.+.... ...+..
T Consensus 190 ~~ile~~~~-------~~~~ivQeyI~~~~~gDiRv~vv---~g~~v~~~g~~~a~~R~~~~~d~RsN~~~Gg~~~~~~- 258 (338)
T PRK12458 190 NQILEFYSG-------DGYVIAQEYLPGAEEGDVRILLL---NGEPLERDGHYAAMRRVPAGGDVRSNVHAGGSVVKHT- 258 (338)
T ss_pred HHHHHHHhh-------CCCEEEEEcccCCCCCCEEEEEE---CCEEEeeccceeEEEEecCCCCeeecccCCCcccCcC-
Confidence 444443221 3689999999963 46666665 34566 443332111 11111111 111222
Q ss_pred CCHHHHHHHHHHHHHHHHHc---CCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHc
Q 013241 226 LTPELRKAMGDAAVAAAASI---GYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAM 296 (447)
Q Consensus 226 l~~~~~~~l~~~a~~i~~al---g~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~ 296 (447)
++++ +.+.|.++...+ |+ ..+.||++ | .+++|||++-.++.+-++..+|+|+...+++...
T Consensus 259 l~~~----~~~ia~~~~~~l~~~GL-~~~gVDli----~-~~l~EIN~~sp~g~~~~~~~~g~d~a~~i~~~i~ 322 (338)
T PRK12458 259 LTKE----ELELCEAIRPKLVRDGL-FFVGLDIV----G-DKLVEVNVFSPGGLTRINKLNKIDFVEDIIEALE 322 (338)
T ss_pred CCHH----HHHHHHHHHHHHhhcCC-eEEeEEEE----C-CEEEEEeCCCcchHHHHHHHhCCCHHHHHHHHHH
Confidence 4444 445666665554 66 38899997 2 3689999997777677778899999999998664
No 87
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.28 E-value=7.9e-11 Score=117.06 Aligned_cols=165 Identities=18% Similarity=0.252 Sum_probs=109.1
Q ss_pred HHHcCCCee----EEEeccChhhHHHHHhccc-------cCH---------HHHH---HHhhhhCCcEEEEeCCC---CC
Q 013241 90 AHEMGIPCV----AVYSTIDKDALHVKLADES-------VCI---------EEAV---KLADELGFPVMIKATAG---GG 143 (447)
Q Consensus 90 ~~~lGi~~v----av~~~~dk~~~~~~lad~~-------v~i---------~e~~---~~~~~ig~PvVvKP~~g---~G 143 (447)
.+..|++++ ++..+.||..+...+.+.+ +++ +.+. ...+.++||+|+||..| ..
T Consensus 88 ~e~pgv~vidp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~ 167 (328)
T PLN02941 88 EKHPDVTVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAK 167 (328)
T ss_pred HHCCCcEEECCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcCCCCEEEeecccCCCcc
Confidence 334555554 3445567777777777766 444 2222 33467899999999999 78
Q ss_pred CcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCC-CceEEEEEEEeCCCcEEEEeeeeecccccc---ceee-
Q 013241 144 GRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-PRHIEFQVLADKYGNVVHFGERDCSIQRRN---QKLL- 218 (447)
Q Consensus 144 g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G-~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~---~k~~- 218 (447)
|++|.++.+.++|... ..++++||||+. ++.+.|.|++|. +.++ .| .|..... ....
T Consensus 168 gh~m~lv~~~~~L~~l-------------~~p~~lQEfVnh~g~d~RVfVvGd~---v~~~-~R-~S~~n~~~~~~n~~~ 229 (328)
T PLN02941 168 SHKMSLAYDQEGLSKL-------------EPPLVLQEFVNHGGVLFKVYVVGDY---VKCV-RR-FSLPDVSEEELSSAE 229 (328)
T ss_pred ccceEEecCHHHHHhc-------------CCcEEEEEecCCCCEEEEEEEECCE---EEEE-Ee-cCCcccccccccccc
Confidence 9999999999887751 257999999953 588999999764 3222 22 1210000 0000
Q ss_pred --------Eec-------------CCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecC--CCEEEEEEeccCCC
Q 013241 219 --------EEA-------------PSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDER--GSFYFMEMNTRIQV 274 (447)
Q Consensus 219 --------~~~-------------P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~--G~~~~iEiNpR~~g 274 (447)
... |.. ......+++.+++.++.+++|. ++++||++.+.+ +.++++|||.-++-
T Consensus 230 G~~~f~~vs~~~~~~~~~~~~~~~~~~-~~~p~~~~l~~La~~~r~alGl-~l~GvDvI~~~~~~~~~~VidVN~fP~~ 306 (328)
T PLN02941 230 GVLPFPRVSNAAASADDADNGGLDPEV-AELPPRPFLEDLARELRRRLGL-RLFNFDMIREHGTGDRYYVIDINYFPGY 306 (328)
T ss_pred ccccccccccccccccccccccccccc-ccCCChHHHHHHHHHHHHHhCC-ceEEEEEEeecCCCCceEEEEecCCCcc
Confidence 000 000 1112345689999999999999 599999999853 46999999998864
No 88
>PRK05246 glutathione synthetase; Provisional
Probab=99.26 E-value=3.8e-10 Score=112.69 Aligned_cols=196 Identities=18% Similarity=0.157 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHcCCCeeE----EEeccChhhHHHHHhccccCH-------HHHHHHhhhhCCcEEEEeCCCCCCcCeEEE
Q 013241 82 IAVRVIRTAHEMGIPCVA----VYSTIDKDALHVKLADESVCI-------EEAVKLADELGFPVMIKATAGGGGRGMRLA 150 (447)
Q Consensus 82 ia~ri~r~~~~lGi~~va----v~~~~dk~~~~~~lad~~v~i-------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v 150 (447)
.+..+++.++..|+++.. +....||...+.... -++- +++.+++++++ |+|+||..|++|+|++++
T Consensus 97 ~~~~~l~~le~~g~~v~N~p~~l~~~~dK~~~~~l~~--~vP~T~~~~~~~~~~~~~~~~~-~vVlKP~~G~~G~gV~~i 173 (316)
T PRK05246 97 YATYLLERAERPGTLVVNKPQSLRDANEKLFTLWFPE--LMPPTLVTRDKAEIRAFRAEHG-DIILKPLDGMGGAGIFRV 173 (316)
T ss_pred HHHHHHHHHHhCCCeEECCHHHHHhCccHHHHHhhhc--cCCCEEEeCCHHHHHHHHHHCC-CEEEEECCCCCccceEEE
Confidence 356677777777876653 244566655544322 1221 67778888887 999999999999999999
Q ss_pred CC-HHHHHHHHHHHHHHHHHhcCCCcEEEeeccCC--CceEEEEEEEeCCCcEEE-Eeeeeecc--ccccce-eeEecCC
Q 013241 151 KE-PDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN--PRHIEFQVLADKYGNVVH-FGERDCSI--QRRNQK-LLEEAPS 223 (447)
Q Consensus 151 ~~-~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G--~~ei~v~vl~d~~g~vv~-l~~r~~s~--~~~~~k-~~~~~P~ 223 (447)
.. ..++...++.... .+..++++|+||+. ..++++.++ +|++++ ...|...- .+.+.. .....|.
T Consensus 174 ~~~~~~~~~~~~~l~~-----~~~~~~lvQ~~I~~~~~~D~Rv~vv---~g~vv~~a~~R~~~~~~~rtN~~~Gg~~~~~ 245 (316)
T PRK05246 174 KADDPNLGSILETLTE-----HGREPVMAQRYLPEIKEGDKRILLV---DGEPVGYALARIPAGGETRGNLAAGGRGEAT 245 (316)
T ss_pred eCCCccHHHHHHHHHH-----ccCCeEEEEeccccCCCCCEEEEEE---CCEEhhheeEecCCCCCcccCccCCceEecc
Confidence 54 4444433333221 23478999999986 368888877 246665 44443211 111111 1122233
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHc
Q 013241 224 PALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAM 296 (447)
Q Consensus 224 ~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~ 296 (447)
. ++++. .++...+.+.++.+|+ ..++||++ | .|++|||..-.++..-.+.++|+|+.+.+++...
T Consensus 246 ~-l~~~~-~~ia~~~~~~l~~~gl-~~~GVDli----~-~~l~EvN~~~p~~~~~~~~~tg~~ia~~i~~~~~ 310 (316)
T PRK05246 246 P-LTERD-REICAAIGPELKERGL-IFVGIDVI----G-DYLTEINVTSPTGIREIERLTGVDIAGMLWDAIE 310 (316)
T ss_pred C-CCHHH-HHHHHHHHHHHHHhCC-CEEEEEEe----C-CEEEEEeCCCchHHHHHHHHhCCCHHHHHHHHHH
Confidence 3 55443 3444444444466676 48999998 3 2699999763345777888999999999998764
No 89
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.24 E-value=4.8e-10 Score=111.73 Aligned_cols=195 Identities=15% Similarity=0.146 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHcCCCeeE----EEeccChhhHHHHHhccccCH-------HHHHHHhhhhCCcEEEEeCCCCCCcCeEEE
Q 013241 82 IAVRVIRTAHEMGIPCVA----VYSTIDKDALHVKLADESVCI-------EEAVKLADELGFPVMIKATAGGGGRGMRLA 150 (447)
Q Consensus 82 ia~ri~r~~~~lGi~~va----v~~~~dk~~~~~~lad~~v~i-------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v 150 (447)
.+..+.+.++..|++++. +..+.||........ .++- +++.++++++| |+|+||..|++|+|++++
T Consensus 96 ~~~~~l~~le~~g~~viN~p~~i~~~~dK~~~~~~~~--~vP~T~v~~~~~~~~~~~~~~g-~vVvKPl~G~~G~gv~~v 172 (312)
T TIGR01380 96 YATYLLELADPTGTLVINSPQGLRDANEKLFTLQFPK--VIPPTLVTRDKAEIRAFLAEHG-DIVLKPLDGMGGEGIFRL 172 (312)
T ss_pred HHHHHHHHHHhCCCeEEeCHHHHHhhhhHHHHhhCcC--CCCCEEEeCCHHHHHHHHHHcC-CEEEEECCCCCCceEEEE
Confidence 456677777777876542 233445543332221 1211 67888888888 999999999999999999
Q ss_pred CCH-HHHHHHHHHHHHHHHHhcCCCcEEEeeccCC--CceEEEEEEEeCCCcEEE-Eeeeeecc--cccccee-eEecCC
Q 013241 151 KEP-DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN--PRHIEFQVLADKYGNVVH-FGERDCSI--QRRNQKL-LEEAPS 223 (447)
Q Consensus 151 ~~~-~el~~~~~~~~~~~~~~~~~~~~lvEefI~G--~~ei~v~vl~d~~g~vv~-l~~r~~s~--~~~~~k~-~~~~P~ 223 (447)
++. .++...++... ..+..++++|+||+. ..++++.+++ |+++. ...|...- .+.+... ....|.
T Consensus 173 ~~~~~~~~~~~~~~~-----~~~~~~~~vQ~yI~~~~~~D~Rv~vv~---g~vv~~ai~R~~~~gd~r~N~~~Gg~~~~~ 244 (312)
T TIGR01380 173 DPGDPNFNSILETMT-----QRGREPVMAQRYLPEIKEGDKRILLID---GEPIGAAVARIPAGGEFRGNLAVGGRGEAT 244 (312)
T ss_pred cCCCccHHHHHHHHH-----hccCCcEEEEeccccccCCCEEEEEEC---CeEEEEEEEecCCCCCccccccCCceeecc
Confidence 753 33433332221 123468999999984 3688998874 45543 33332111 1111111 122233
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHH
Q 013241 224 PALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVA 295 (447)
Q Consensus 224 ~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a 295 (447)
. ++++.. ++...+...++.+|+ .++.||++ | .||+|+|.--+.+..-.+..+|+|+...+++..
T Consensus 245 ~-l~~e~~-~ia~~~~~~~~~~gl-~~agVDii----g-~~v~EvN~~~p~~~~~~~~~~g~~ia~~i~d~l 308 (312)
T TIGR01380 245 E-LSERDR-EICADVAPELKRRGL-LFVGIDVI----G-GYLTEVNVTSPTGIREIDRQKGVNIAGMLWDAI 308 (312)
T ss_pred C-CCHHHH-HHHHHHHHHHHhcCC-cEEEEEEe----C-CEEEEEecCCcchHHHHHhhhCCCHHHHHHHHH
Confidence 2 555433 444445555577787 48999998 3 579999986333444466789999999988765
No 90
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.99 E-value=1.3e-08 Score=98.86 Aligned_cols=175 Identities=18% Similarity=0.273 Sum_probs=110.2
Q ss_pred HHcCCCeeEEEeccChhhHHHHHhcccc-CH-----------HHHHHHhhhhCCcEEEEeCCCCCCcCeEEEC-------
Q 013241 91 HEMGIPCVAVYSTIDKDALHVKLADESV-CI-----------EEAVKLADELGFPVMIKATAGGGGRGMRLAK------- 151 (447)
Q Consensus 91 ~~lGi~~vav~~~~dk~~~~~~lad~~v-~i-----------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~------- 151 (447)
++.|++...- ..-||...+..|..... .- +++.+++++.+ -|+|||..|+.|+||.+++
T Consensus 5 ~~~~i~~~n~-~~~~Kw~v~~~L~~~~~l~~~LP~T~~~~~~~~l~~~L~~y~-~vylKP~~Gs~G~gI~ri~~~~~~~~ 82 (262)
T PF14398_consen 5 KQKGIPFFNP-GFFDKWEVYKALSRDPELRPYLPETELLTSFEDLREMLNKYK-SVYLKPDNGSKGKGIIRIEKKGGGYR 82 (262)
T ss_pred hcCCCEEeCC-CCCCHHHHHHHHHcCCcchhhCCCceEcCCHHHHHHHHHHCC-EEEEEeCCCCCCccEEEEEEeCCEEE
Confidence 3456654443 34678888887776432 11 67778888765 5999999999999997653
Q ss_pred ---------------CHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCC------CceEEEEEEEeCCCcEEE--Eeeeee
Q 013241 152 ---------------EPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN------PRHIEFQVLADKYGNVVH--FGERDC 208 (447)
Q Consensus 152 ---------------~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G------~~ei~v~vl~d~~g~vv~--l~~r~~ 208 (447)
+.+++...+... .+...+|||+.|+- +-++.|.+..|+.|.... +..|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W~vtg~~~Rva 155 (262)
T PF14398_consen 83 IQYRNKKKNVRRTFSSLEELEQFLKEL-------LGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKWQVTGIVARVA 155 (262)
T ss_pred EEEccCCceeEEEeCCHHHHHHHHHHh-------cCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCEEEEEEEEEEc
Confidence 234444444332 34579999999974 235667777777775443 333321
Q ss_pred c---cccccceeeEecCC-----C-CCCHHHHHHHHHHHHHHHHHc----CC-ccEeEEEEEEecCCCEEEEEEeccCCC
Q 013241 209 S---IQRRNQKLLEEAPS-----P-ALTPELRKAMGDAAVAAAASI----GY-IGVGTVEFLLDERGSFYFMEMNTRIQV 274 (447)
Q Consensus 209 s---~~~~~~k~~~~~P~-----~-~l~~~~~~~l~~~a~~i~~al----g~-~G~~~vEf~~d~~G~~~~iEiNpR~~g 274 (447)
. +..+........+. . .-.....++|.+.+..+++.+ |. -|-.++|+-+|.+|++|+||+|++|+-
T Consensus 156 ~~~~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~~g~iWliEvN~kP~~ 235 (262)
T PF14398_consen 156 KPGSIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGIDKNGKIWLIEVNSKPGK 235 (262)
T ss_pred CCCCceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEcCCCCEEEEEEeCCCCc
Confidence 1 11110000000110 0 012346667778887777766 55 477899999999999999999999874
No 91
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=98.93 E-value=4.2e-08 Score=94.60 Aligned_cols=150 Identities=20% Similarity=0.263 Sum_probs=104.2
Q ss_pred hhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHh-cCCCcEEEeeccCCCceEEEEEEEeC-C--CcEEEE
Q 013241 128 DELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAA-FGNDGVYLEKYVQNPRHIEFQVLADK-Y--GNVVHF 203 (447)
Q Consensus 128 ~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~-~~~~~~lvEefI~G~~ei~v~vl~d~-~--g~vv~l 203 (447)
+++.-|||||....-||+|.+++.|.+|+.+..++......-. =+-..+.|||||-| .++-++.+... . -+++.+
T Consensus 147 eeIdr~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~G-~~f~~~yFyS~i~~~lEl~g~ 225 (361)
T COG1759 147 EEIDRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVG-APFYFHYFYSPIKDRLELLGI 225 (361)
T ss_pred HHcCCceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEeec-cceeeeeeeccccCceeEeee
Confidence 4566799999999999999999999999999988877521000 01246899999999 55555555432 1 123333
Q ss_pred eeeeeccccc-------cc---------eeeEecCCCCCCHHHHHHHHHHHHHHHHHc------CCccEeEEEEEEecCC
Q 013241 204 GERDCSIQRR-------NQ---------KLLEEAPSPALTPELRKAMGDAAVAAAASI------GYIGVGTVEFLLDERG 261 (447)
Q Consensus 204 ~~r~~s~~~~-------~~---------k~~~~~P~~~l~~~~~~~l~~~a~~i~~al------g~~G~~~vEf~~d~~G 261 (447)
..|--|-... .| .++...|.. +.+.+..++.+++.+++++. |+.|++++|.++++|=
T Consensus 226 D~R~Esn~Dg~~RlPa~~ql~l~~~ptyvv~Gn~p~v-lRESLL~~vfe~ger~V~a~kel~~PG~iGpFcLq~~~t~dl 304 (361)
T COG1759 226 DRRYESNLDGLVRLPAKDQLELNLEPTYVVVGNIPVV-LRESLLPKVFEMGERFVEATKELVPPGIIGPFCLQTIVTDDL 304 (361)
T ss_pred eheeeccchhhccCCHHHHhhcCCCceEEEECCcchh-hHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeeeeeecCCc
Confidence 2222111100 11 122334554 77888889999988887765 7889999999999988
Q ss_pred CEEEEEEeccCCCccchh
Q 013241 262 SFYFMEMNTRIQVEHPVT 279 (447)
Q Consensus 262 ~~~~iEiNpR~~g~~~v~ 279 (447)
++|+.|+.+|+.++..+.
T Consensus 305 ~~vVfevS~Ri~gGTNv~ 322 (361)
T COG1759 305 EFVVFEVSARIVGGTNVY 322 (361)
T ss_pred cEEEEEEeccccCCcccc
Confidence 899999999998875443
No 92
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=98.86 E-value=1.2e-07 Score=97.42 Aligned_cols=173 Identities=22% Similarity=0.315 Sum_probs=113.9
Q ss_pred HHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhC-CcEEEEeC--CCC-C-CcCeEEECCHHHHHHHHH
Q 013241 87 IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELG-FPVMIKAT--AGG-G-GRGMRLAKEPDEFVKLLQ 161 (447)
Q Consensus 87 ~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig-~PvVvKP~--~g~-G-g~Gv~~v~~~~el~~~~~ 161 (447)
.+.++++|||++.+....+. +++.+.++++| ||+|+||. .|+ | +-||+++++.+|+.++++
T Consensus 9 K~ll~~~GIpvp~~~~~~~~--------------~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~ 74 (386)
T TIGR01016 9 KQIFAKYGIPVPRGYVATSV--------------EEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAE 74 (386)
T ss_pred HHHHHHcCCCCCCceeeCCH--------------HHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHH
Confidence 45678899999998888777 88899999999 99999997 333 2 239999999999999998
Q ss_pred HHHHHHHHh--c---C--CCcEEEeeccCCCceEEEEEEEeC--CCcEEEEeee---ee-ccccc-cce--eeEecCCC-
Q 013241 162 QAKSEAAAA--F---G--NDGVYLEKYVQNPRHIEFQVLADK--YGNVVHFGER---DC-SIQRR-NQK--LLEEAPSP- 224 (447)
Q Consensus 162 ~~~~~~~~~--~---~--~~~~lvEefI~G~~ei~v~vl~d~--~g~vv~l~~r---~~-s~~~~-~~k--~~~~~P~~- 224 (447)
++....... . + -..++||+|+++.+|+.+.++.|. .|.++.++.. +. .+.+. ..+ .+...|..
T Consensus 75 ~l~~~~~~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p~~~ 154 (386)
T TIGR01016 75 KLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPLTG 154 (386)
T ss_pred HHhccceeecccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCCceEEEEECCCCccHHHHhhhCccceEEEEcCCCcC
Confidence 776421100 0 1 136999999996699999999986 4555555421 00 00010 011 11122211
Q ss_pred -------------CCCHHHHHHHHHHHHHHHHHcCCccEeEEEE---EEecCCCEEEEEEeccCC
Q 013241 225 -------------ALTPELRKAMGDAAVAAAASIGYIGVGTVEF---LLDERGSFYFMEMNTRIQ 273 (447)
Q Consensus 225 -------------~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf---~~d~~G~~~~iEiNpR~~ 273 (447)
.++....+.+.+.+.++.+.+.-..+..+|+ +++++|+++.++..-.+.
T Consensus 155 ~~~~~a~~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~lEINPl~v~~~g~~~a~Daki~~d 219 (386)
T TIGR01016 155 LLPYQAREIAKKLGLEGELVKQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALDAKLTID 219 (386)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCceEEEeeeeEEcCCCCEEEEeeeEeec
Confidence 1455677788888888888775444666664 556666666666544443
No 93
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=98.80 E-value=7.9e-09 Score=86.85 Aligned_cols=62 Identities=47% Similarity=0.647 Sum_probs=55.4
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH------------HHHHHHhhhhC
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI------------EEAVKLADELG 131 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i------------~e~~~~~~~ig 131 (447)
|++||||+||||+|+|++|+|+++|++++.+++..|..++|..++|+.+.+ +.+.+.+++.|
T Consensus 1 ~ikkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g 74 (110)
T PF00289_consen 1 MIKKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEG 74 (110)
T ss_dssp SSSEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhc
Confidence 589999999999999999999999999999999999999999999997655 67777777665
No 94
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=98.75 E-value=3.2e-07 Score=94.29 Aligned_cols=104 Identities=27% Similarity=0.356 Sum_probs=82.4
Q ss_pred HHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhh-CCcEEEEeCCCCCCc----CeEEECCHHHHHHHHH
Q 013241 87 IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADEL-GFPVMIKATAGGGGR----GMRLAKEPDEFVKLLQ 161 (447)
Q Consensus 87 ~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~i-g~PvVvKP~~g~Gg~----Gv~~v~~~~el~~~~~ 161 (447)
.+.++++|||++....+.+. +++.++++++ |||+|+||....||+ ||+++++.+|+.++++
T Consensus 9 k~lL~~~gIpvp~~~~~~~~--------------~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~ 74 (388)
T PRK00696 9 KELFAKYGVPVPRGIVATTP--------------EEAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAK 74 (388)
T ss_pred HHHHHHcCCCCCCCeeeCCH--------------HHHHHHHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHH
Confidence 35678899999999999998 9999999999 999999997544444 9999999999999998
Q ss_pred HHHHHHH--Hh---cC--CCcEEEeeccCCCceEEEEEEEeC-CCcEEEEe
Q 013241 162 QAKSEAA--AA---FG--NDGVYLEKYVQNPRHIEFQVLADK-YGNVVHFG 204 (447)
Q Consensus 162 ~~~~~~~--~~---~~--~~~~lvEefI~G~~ei~v~vl~d~-~g~vv~l~ 204 (447)
+...... .. .+ ...++||+++++..|+.+.+..|. .|.++.++
T Consensus 75 ~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~fgpvv~~~ 125 (388)
T PRK00696 75 QILGMTLVTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRATRRVVFMA 125 (388)
T ss_pred HhhccceeeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCCCceEEEE
Confidence 8764321 00 01 135999999996699999999996 46666543
No 95
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.60 E-value=2.7e-06 Score=83.68 Aligned_cols=182 Identities=16% Similarity=0.227 Sum_probs=104.5
Q ss_pred HHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhh-CCcEEEEeCCCCCCcCeEEECCHHH--HHHHHH
Q 013241 85 RVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADEL-GFPVMIKATAGGGGRGMRLAKEPDE--FVKLLQ 161 (447)
Q Consensus 85 ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~i-g~PvVvKP~~g~Gg~Gv~~v~~~~e--l~~~~~ 161 (447)
..-+.|++.|++++.............. .....+++.+++... ..++|+||..|++|+|+.+++..+. +.....
T Consensus 29 ~~~~l~~~~gi~vP~~i~~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~Gi~~i~~~~~~~~~~~~~ 105 (285)
T PF14397_consen 29 LFKQLFRDYGIPVPEAIFNVGRDYFDLR---EQHSIEDLEEFLRKHAPDRFVIKPANGSGGKGILVIDRRDGSEINRDIS 105 (285)
T ss_pred HHHHHHHHhcCCCCceEEeccceEEecc---cccCHHHHHHHHHhccCCcEEEEeCCCCCccCEEEEEeecCcccccchh
Confidence 3455677888888763321111000000 111226777777664 5799999999999999999876551 111111
Q ss_pred HHHHHHHHhcCCCcEEEeeccCCC-----------ceEEEEEEEeCCCcEEEE--eeee---------------------
Q 013241 162 QAKSEAAAAFGNDGVYLEKYVQNP-----------RHIEFQVLADKYGNVVHF--GERD--------------------- 207 (447)
Q Consensus 162 ~~~~~~~~~~~~~~~lvEefI~G~-----------~ei~v~vl~d~~g~vv~l--~~r~--------------------- 207 (447)
........ .....++|||+|.-. ..+.+..+.+. +.+..+ .-|-
T Consensus 106 ~~~~~~~~-~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~-~~~~~~~a~lRlg~~~~~~DN~~~Ggi~~~ID~ 183 (285)
T PF14397_consen 106 ALYAGLES-LGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD-GEVEVLMAMLRLGRGGSGVDNFHQGGIGVGIDL 183 (285)
T ss_pred HHHHHHHh-cCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC-CeeEEEEEEEEeCCCCCcccccCCCCEEEEEec
Confidence 11111111 111289999998752 23666666665 333221 0110
Q ss_pred ----ecc--ccccceeeEecCCCC-----CCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccC
Q 013241 208 ----CSI--QRRNQKLLEEAPSPA-----LTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRI 272 (447)
Q Consensus 208 ----~s~--~~~~~k~~~~~P~~~-----l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~ 272 (447)
+.. ........+.-|-.. +.-...+++.+.+.++.+.+-..+....|+.+|++| +++||.|.+.
T Consensus 184 ~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWDvait~~G-p~llE~N~~~ 258 (285)
T PF14397_consen 184 ATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWDVAITEDG-PVLLEGNARW 258 (285)
T ss_pred CCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEEEEEcCCC-cEEEEeeCCC
Confidence 000 001111222223221 122456788899999998887778999999999999 9999999994
No 96
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.55 E-value=5e-07 Score=81.99 Aligned_cols=134 Identities=19% Similarity=0.269 Sum_probs=70.3
Q ss_pred HHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCH-HHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCc--eEEEEEEEeCC
Q 013241 121 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEP-DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPR--HIEFQVLADKY 197 (447)
Q Consensus 121 ~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~-~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~--ei~v~vl~d~~ 197 (447)
+++.++.++.+. +|+||..|.||+||+++... ..+...++.+... +..++++|+|++... +.++-++ +
T Consensus 22 ~~i~~f~~~~~~-~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~-----~~~~~mvQ~flp~i~~GDkRii~~---n 92 (173)
T PF02955_consen 22 EEIRAFIEEHGD-IVLKPLDGMGGRGVFRISRDDPNLNSILETLTKN-----GERPVMVQPFLPEIKEGDKRIILF---N 92 (173)
T ss_dssp HHHHHHHHHHSS-EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTT-----TTS-EEEEE--GGGGG-EEEEEEE---T
T ss_pred HHHHHHHHHCCC-EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhc-----CCccEEEEeccccccCCCEEEEEE---C
Confidence 888999999988 99999999999999999874 4455544443322 246799999999733 6777666 4
Q ss_pred CcEEEEeeeeecc--ccccceee-EecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEecc
Q 013241 198 GNVVHFGERDCSI--QRRNQKLL-EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTR 271 (447)
Q Consensus 198 g~vv~l~~r~~s~--~~~~~k~~-~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR 271 (447)
|+.++...|.-.- .|.+.... ...+.. ++++.+ ++++.....++.-|+. ++++|++ | -|++|||--
T Consensus 93 G~~~~av~R~P~~gd~R~N~~~Gg~~~~~~-lt~~e~-~i~~~i~~~L~~~Gl~-f~GiDvi----g-~~l~EiNvt 161 (173)
T PF02955_consen 93 GEPSHAVRRIPAKGDFRSNLAAGGSAEPAE-LTERER-EICEQIGPKLREDGLL-FVGIDVI----G-DKLTEINVT 161 (173)
T ss_dssp TEE-SEEEEE--SS-S---GGGTSCEEEEE---HHHH-HHHHHHHHHHHHTT---EEEEEEE----T-TEEEEEE-S
T ss_pred CEEhHHeecCCCCCCceeeeccCCceeecC-CCHHHH-HHHHHHHHHHhhcCcE-EEEEecc----c-cceEEEecc
Confidence 4555543332111 11111000 011121 444433 3333333334444554 7789987 3 289999974
No 97
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=98.47 E-value=1.4e-06 Score=82.44 Aligned_cols=108 Identities=30% Similarity=0.451 Sum_probs=74.1
Q ss_pred HHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCC-----CCcCeEE-ECCHHHHHH
Q 013241 85 RVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGG-----GGRGMRL-AKEPDEFVK 158 (447)
Q Consensus 85 ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~-----Gg~Gv~~-v~~~~el~~ 158 (447)
...+.++.+||+++....+.+. +++.++++++|||+++|-.+-. ---||.+ +.+++++.+
T Consensus 14 e~~~lL~~yGI~~~~~~~~~~~--------------~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~ 79 (222)
T PF13549_consen 14 EAKELLAAYGIPVPPTRLVTSA--------------EEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVRE 79 (222)
T ss_dssp HHHHHHHTTT------EEESSH--------------HHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHH
T ss_pred HHHHHHHHcCcCCCCeeEeCCH--------------HHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHH
Confidence 3456678899999999999999 9999999999999999997644 2336776 889999999
Q ss_pred HHHHHHHHHHHhcC---CCcEEEeeccC-CCceEEEEEEEeC-CCcEEEEeee
Q 013241 159 LLQQAKSEAAAAFG---NDGVYLEKYVQ-NPRHIEFQVLADK-YGNVVHFGER 206 (447)
Q Consensus 159 ~~~~~~~~~~~~~~---~~~~lvEefI~-G~~ei~v~vl~d~-~g~vv~l~~r 206 (447)
++++.......... ...++||+.++ ++.|+.+.+..|. .|.++.++.-
T Consensus 80 a~~~l~~~~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~FGPvv~~G~G 132 (222)
T PF13549_consen 80 AFERLRERVAAHHPGARIDGVLVQEMAPSGGRELIVGVRRDPQFGPVVMFGLG 132 (222)
T ss_dssp HHHHHHHHHHHH-TT----EEEEEE------EEEEEEEEEETTTEEEEEEEE-
T ss_pred HHHHHHHHHHHhCCCCccceEEEEEcccCCcEEEEEEEEECCCCCCEEEEcCC
Confidence 99999887665333 36899999999 5699999999985 6788877653
No 98
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=97.99 E-value=0.00022 Score=64.95 Aligned_cols=128 Identities=17% Similarity=0.259 Sum_probs=79.2
Q ss_pred hhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeee
Q 013241 128 DELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD 207 (447)
Q Consensus 128 ~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~ 207 (447)
..-.||+|||--.+.+|.|-.+|+|..++.+...-.... +.-+-+|.||+-..++.+|-+++ +..++-.+.
T Consensus 47 s~~~fPvVvKvG~~h~G~GKvkv~n~~~~qDi~sll~~~------~~Y~T~EPfId~kyDirvqkIG~---~ykA~~R~s 117 (203)
T PF02750_consen 47 SAPRFPVVVKVGHAHAGMGKVKVDNQQDFQDIASLLAIT------KDYATTEPFIDAKYDIRVQKIGN---NYKAYMRTS 117 (203)
T ss_dssp S-SSSSEEEEESS-STTTTEEEE-SHHHHHHHHHHHHHH------TS-EEEEE---EEEEEEEEEETT---EEEEEEEEE
T ss_pred cCCCCCEEEEEccccCceeEEEEccHHHHHHHHHHHHhc------CceEEeeccccceeEEEEEEEcC---eEEEEEEcc
Confidence 345799999999999999999999999988765544322 47789999999877888888754 333332221
Q ss_pred -ecccccc--ceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEecc
Q 013241 208 -CSIQRRN--QKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTR 271 (447)
Q Consensus 208 -~s~~~~~--~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR 271 (447)
+.....+ ....+.-+ ++ ++...++.++.+.+|--.++.+|.+..+||+-|++|+|--
T Consensus 118 is~nWK~N~gsa~lEqi~---~~----~ryk~Wvd~~s~lfGGlDI~~v~ai~~kdGke~Iievnds 177 (203)
T PF02750_consen 118 ISGNWKANTGSAMLEQIA---MT----ERYKLWVDECSELFGGLDICAVDAIHGKDGKEYIIEVNDS 177 (203)
T ss_dssp SSSTSSTTSSSEEEEEE----------HHHHHHHHHHGGGGG--SEEEEEEEEETTS-EEEEEEE-T
T ss_pred ccccccccccchheeecC---CC----hHHHHHHHHHHHHcCCccEEEEEEEEcCCCCEEEEEecCC
Confidence 1111111 11222222 22 3445677777788854469999999999999999999953
No 99
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=97.96 E-value=4.8e-05 Score=75.11 Aligned_cols=55 Identities=25% Similarity=0.546 Sum_probs=30.6
Q ss_pred cEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCC-----c--eEEEEEEEeC
Q 013241 133 PVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNP-----R--HIEFQVLADK 196 (447)
Q Consensus 133 PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~-----~--ei~v~vl~d~ 196 (447)
-+|+||..++.|+|++++++.+++.+. .......++||+||+.+ + ++.+-++...
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~---------~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvts 128 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRF---------SKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVTS 128 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCC---------HCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-T
T ss_pred EEEEeccccCCCCCceecCCHHHHHHH---------hhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEee
Confidence 489999999999999999999888753 11235899999999852 3 5666666554
No 100
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=97.90 E-value=0.0006 Score=70.12 Aligned_cols=104 Identities=18% Similarity=0.140 Sum_probs=81.4
Q ss_pred HHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCc-EEEEeCCCC----CCcCeEEECCHHHHHHHHH
Q 013241 87 IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFP-VMIKATAGG----GGRGMRLAKEPDEFVKLLQ 161 (447)
Q Consensus 87 ~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~P-vVvKP~~g~----Gg~Gv~~v~~~~el~~~~~ 161 (447)
.+.+++.||+++....+.+. +|+.+.++++||| +++|+..-. -+-||.+..|.+|+.++++
T Consensus 9 k~lL~~yGIpvp~~~~~~~~--------------~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~ 74 (392)
T PRK14046 9 KELLASFGVAVPRGALAYSP--------------EQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAE 74 (392)
T ss_pred HHHHHHcCCCCCCceEECCH--------------HHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHH
Confidence 45678899999999999998 9999999999995 599973222 2557889999999999999
Q ss_pred HHHHHHH---Hhc----CCCcEEEeeccCCCceEEEEEEEeC-CCcEEEEe
Q 013241 162 QAKSEAA---AAF----GNDGVYLEKYVQNPRHIEFQVLADK-YGNVVHFG 204 (447)
Q Consensus 162 ~~~~~~~---~~~----~~~~~lvEefI~G~~ei~v~vl~d~-~g~vv~l~ 204 (447)
++..... ... .-..++||+++++.+|+-+.+..|. .|.++.++
T Consensus 75 ~ll~~~~~~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~g~~v~~~ 125 (392)
T PRK14046 75 DLLGKKLVTHQTGPEGKPVQRVYVETADPIERELYLGFVLDRKSERVRVIA 125 (392)
T ss_pred HHhcchhhhhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCCCcEEEEE
Confidence 8876421 111 1247999999998899999999985 56777664
No 101
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=97.81 E-value=0.00012 Score=72.23 Aligned_cols=127 Identities=17% Similarity=0.294 Sum_probs=75.6
Q ss_pred hhhCCcEEEEeCCCC---CCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCC-CceEEEEEEEeCCCcEEEE
Q 013241 128 DELGFPVMIKATAGG---GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-PRHIEFQVLADKYGNVVHF 203 (447)
Q Consensus 128 ~~ig~PvVvKP~~g~---Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G-~~ei~v~vl~d~~g~vv~l 203 (447)
+.+.||+|.||.... .+..|.++.+++.|.+. ..++++||||.- +.-+-|.+++|.. .+
T Consensus 135 agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L-------------~~P~VlQeFVNHggvLfKVyVvGd~v----~~ 197 (307)
T PF05770_consen 135 AGLKFPLICKPLVACGSADSHKMAIVFNEEGLKDL-------------KPPCVLQEFVNHGGVLFKVYVVGDKV----FV 197 (307)
T ss_dssp TTS-SSEEEEESB-SSTSCCCEEEEE-SGGGGTT---------------SSEEEEE----TTEEEEEEEETTEE----EE
T ss_pred CCCcccEEeeehhhcCCccceEEEEEECHHHHhhc-------------CCCEEEEEeecCCCEEEEEEEecCEE----EE
Confidence 467899999997644 47889999999998753 378999999984 5678888886532 22
Q ss_pred eeee----ecc---cccc-----cee-----------eEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEe-c
Q 013241 204 GERD----CSI---QRRN-----QKL-----------LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLD-E 259 (447)
Q Consensus 204 ~~r~----~s~---~~~~-----~k~-----------~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d-~ 259 (447)
..|. -+. .+.. ..+ ....+.. ....-.+.+.++|..+-++||+. ++++|++++ .
T Consensus 198 v~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~-~~~p~~~~v~~la~~LR~~lgL~-LFgfDvI~~~~ 275 (307)
T PF05770_consen 198 VKRPSLPNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQ-VEMPPDELVEKLAKELRRALGLT-LFGFDVIRENG 275 (307)
T ss_dssp EEEE------SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTT-TTS--HHHHHHHHHHHHHHHT-S-EEEEEEEEGCC
T ss_pred EECCCCCCCCcccccccccceeccccCCccccCchhhcccCccc-ccCCCHHHHHHHHHHHHHHhCcc-eeeeEEEEEcC
Confidence 2221 000 0000 000 0000111 11123456788999999999996 999999998 5
Q ss_pred C-CCEEEEEEeccCC
Q 013241 260 R-GSFYFMEMNTRIQ 273 (447)
Q Consensus 260 ~-G~~~~iEiNpR~~ 273 (447)
+ |++|+|+||.=|+
T Consensus 276 t~~~~~VIDINyFPg 290 (307)
T PF05770_consen 276 TGGRYYVIDINYFPG 290 (307)
T ss_dssp T-SSEEEEEEEES--
T ss_pred CCCcEEEEEeccCCC
Confidence 5 7899999999765
No 102
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=97.73 E-value=0.0011 Score=68.45 Aligned_cols=104 Identities=21% Similarity=0.312 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhh---CCcEEEEeC--CCCCC---------cC
Q 013241 81 EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADEL---GFPVMIKAT--AGGGG---------RG 146 (447)
Q Consensus 81 eia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~i---g~PvVvKP~--~g~Gg---------~G 146 (447)
|... .+.+++.|||++....+.+. +|+.+.++++ ++|+|+|+. .|+-| -|
T Consensus 32 Eyqa--K~LL~~~GIpvp~~~va~t~--------------eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GG 95 (422)
T PLN00124 32 EYQG--AELMSKYGVNVPKGAAASSL--------------DEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGG 95 (422)
T ss_pred HHHH--HHHHHHcCCCCCCceeeCCH--------------HHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCe
Confidence 5443 46688899999998888888 8999999888 699999997 44433 34
Q ss_pred eEEECCHHHHHHHHHHHHHHH--HHhc---C--CCcEEEeeccCCCceEEEEEEEeC--CCcEE
Q 013241 147 MRLAKEPDEFVKLLQQAKSEA--AAAF---G--NDGVYLEKYVQNPRHIEFQVLADK--YGNVV 201 (447)
Q Consensus 147 v~~v~~~~el~~~~~~~~~~~--~~~~---~--~~~~lvEefI~G~~ei~v~vl~d~--~g~vv 201 (447)
|.++++ +|+.+++++..... ...- | -..++|||.+...+|+=+.+..|. .|.++
T Consensus 96 V~l~~~-eea~~aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpvi 158 (422)
T PLN00124 96 VHIVKK-DKAEELAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLI 158 (422)
T ss_pred EEECCH-HHHHHHHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcEE
Confidence 667766 99999988876541 1100 1 135786777776689999999986 35555
No 103
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=97.52 E-value=0.0036 Score=60.01 Aligned_cols=141 Identities=15% Similarity=0.154 Sum_probs=82.7
Q ss_pred hhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcC-----------CCcEEEeeccCCC-----ceEEEE
Q 013241 128 DELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG-----------NDGVYLEKYVQNP-----RHIEFQ 191 (447)
Q Consensus 128 ~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~-----------~~~~lvEefI~G~-----~ei~v~ 191 (447)
..+.-++||||..|+|+..+....+.-+...+...+..-....+. ...+++|+++... .++-+.
T Consensus 53 ~~Lp~~fViK~nhgsg~~~i~~dk~~~d~~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~ 132 (239)
T PF14305_consen 53 DSLPDKFVIKPNHGSGSNIIVRDKSKLDIEEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFF 132 (239)
T ss_pred hcCCCCEEEEEecCCCcEEEEeCCcccCHHHHHHHHHHHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEE
Confidence 345568999999999988877665544444333333221111121 3689999999862 357777
Q ss_pred EEEeCCCcEEEEee---ee----eccccccc---eeeEec--CCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEec
Q 013241 192 VLADKYGNVVHFGE---RD----CSIQRRNQ---KLLEEA--PSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE 259 (447)
Q Consensus 192 vl~d~~g~vv~l~~---r~----~s~~~~~~---k~~~~~--P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~ 259 (447)
++ +|++..+.. |. ..+..... ...... ....-.++..++|.++|.++.+.+. .+.|||...+
T Consensus 133 cF---~G~~~~i~v~~~r~~~~~~~~yd~dw~~l~~~~~~~~~~~~~kP~~l~emi~iA~~Ls~~f~---fvRVDlY~~~ 206 (239)
T PF14305_consen 133 CF---NGKPKFIQVDSDRFGNHKRNFYDRDWNRLPFRSDYPPDEDIPKPKNLEEMIEIAEKLSKGFP---FVRVDLYNVD 206 (239)
T ss_pred EE---CCEEEEEEEEeCCCCCeEEEEECcccCCCccccCCCCCCCCCCChhHHHHHHHHHHHccCCC---EEEEEEEEeC
Confidence 77 333332211 10 00000000 010011 1111345677888899988887755 5799998875
Q ss_pred CCCEEEEEEeccCCCc
Q 013241 260 RGSFYFMEMNTRIQVE 275 (447)
Q Consensus 260 ~G~~~~iEiNpR~~g~ 275 (447)
|++||-|+-..++++
T Consensus 207 -~~iyFGElTf~p~~G 221 (239)
T PF14305_consen 207 -GKIYFGELTFTPGAG 221 (239)
T ss_pred -CcEEEEeeecCCCCc
Confidence 569999999998875
No 104
>PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mechanism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the C-terminal domain of PurP, which is homologous to the ATP-GRASP fold and thus may be involved in ATP-binding. It is almost always found in association with IPR010672 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2R85_B 2R87_E 2R84_A 2R86_A 2PBZ_B 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=97.52 E-value=0.0011 Score=59.77 Aligned_cols=102 Identities=16% Similarity=0.171 Sum_probs=63.1
Q ss_pred CcEEEeeccCCCceEEEEEEEeCCC-c--EEEEeeeeeccccc----c------------ceeeEecCCCCCCHHHHHHH
Q 013241 174 DGVYLEKYVQNPRHIEFQVLADKYG-N--VVHFGERDCSIQRR----N------------QKLLEEAPSPALTPELRKAM 234 (447)
Q Consensus 174 ~~~lvEefI~G~~ei~v~vl~d~~g-~--vv~l~~r~~s~~~~----~------------~k~~~~~P~~~l~~~~~~~l 234 (447)
..+.||||+-| .++-+..+...-- + ++.+..|--+-... . -.+....|.. +.+.+.+++
T Consensus 21 ~~~~IeEyviG-~~~~~~yFySpi~~~~Ellg~D~R~esn~Dg~~RlPa~~Ql~~~~~p~~vvvGn~p~v-lRESLL~~v 98 (188)
T PF06973_consen 21 ENAIIEEYVIG-VPFYFHYFYSPIKDRVELLGIDRRYESNIDGLVRLPAKQQLELNIEPSYVVVGNIPAV-LRESLLPKV 98 (188)
T ss_dssp CCEEEEE---S-EEEEEEEEEETTTTEEEEEEEEEEEEEETCCCCCS-HHHHHCCT----EEEEEEEEEE-E-GGGHHHH
T ss_pred cccEEEEEecC-ceEEEeeecccccCceeeeeeeeEEEecchhhhcCCcHHHhccCCCCceEEECCcccc-hhHhhHHHH
Confidence 68999999999 7777777765322 2 22332332221100 0 0123334554 778888888
Q ss_pred HHHHHHHHHHc------CCccEeEEEEEEecCCCEEEEEEeccCCCccc
Q 013241 235 GDAAVAAAASI------GYIGVGTVEFLLDERGSFYFMEMNTRIQVEHP 277 (447)
Q Consensus 235 ~~~a~~i~~al------g~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~ 277 (447)
.+++.+++++. |+-|++++|.++++|.++++.|+.+|+.++..
T Consensus 99 fe~ge~fV~a~k~l~~PG~iGPFcLq~ivt~dle~vvfevS~RI~gGTN 147 (188)
T PF06973_consen 99 FEMGERFVEASKELVPPGMIGPFCLQSIVTDDLEFVVFEVSARIVGGTN 147 (188)
T ss_dssp HHHHHHHHHHHHHHSTT---EEEEEEEEE-TTSSEEEEEEESSB-GGGG
T ss_pred HHHHHHHHHHHHHhcCCCccccceEEEEEcCCceEEEEEEeccccCCCC
Confidence 88888887765 78899999999999999999999999988543
No 105
>PLN02235 ATP citrate (pro-S)-lyase
Probab=97.08 E-value=0.021 Score=58.69 Aligned_cols=171 Identities=17% Similarity=0.227 Sum_probs=101.0
Q ss_pred HHHHHc-----CCCeeEEEec-cChhhHHHHHhccccCHHHHHHHhhh---hCCc-EEEEeCCCCCCc----CeEEECCH
Q 013241 88 RTAHEM-----GIPCVAVYST-IDKDALHVKLADESVCIEEAVKLADE---LGFP-VMIKATAGGGGR----GMRLAKEP 153 (447)
Q Consensus 88 r~~~~l-----Gi~~vav~~~-~dk~~~~~~lad~~v~i~e~~~~~~~---ig~P-vVvKP~~g~Gg~----Gv~~v~~~ 153 (447)
+.+++. |||++..... .+. +++.+.+++ ++.| +||||---.||| ||.+++|+
T Consensus 13 ~ll~~~~~~~~gipvP~~~v~~~~~--------------ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~ 78 (423)
T PLN02235 13 RLLKEHLKRLAGIDLPIRSAQVTES--------------TDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDL 78 (423)
T ss_pred HHHHHhhcccCCCCCCCCeeccCCH--------------HHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCH
Confidence 445555 9999877666 666 777787777 7775 699996655544 48999999
Q ss_pred HHHHHHHHHHHHHHHHhc----CCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeee-ecccccccee--eEecCCCCC
Q 013241 154 DEFVKLLQQAKSEAAAAF----GNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD-CSIQRRNQKL--LEEAPSPAL 226 (447)
Q Consensus 154 ~el~~~~~~~~~~~~~~~----~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~-~s~~~~~~k~--~~~~P~~~l 226 (447)
+|+.++.++......... .-..++||++++-.+|+=+.++.|.....+.+...- ..+.....++ ....|...+
T Consensus 79 ~Ea~~~a~~~Lg~~l~t~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~ii~S~~GGvdIEe~pe~i~k~~Id~~~gl 158 (423)
T PLN02235 79 AQVATFVKERLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLSIVSDRLGCSISFSECGGIEIEENWDKVKTIFLPTEAPL 158 (423)
T ss_pred HHHHHHHHHHhCCceEecCCCccEeEEEEEecCCCcceEEEEEEEecCCCEEEEECCCCCcccCChhHeEEEEcCCCCCC
Confidence 999999888764321000 113789999999888988888888776654332210 1122222222 222333334
Q ss_pred CHH------------HHHHHHHHHHHHHHHcCCccEeEEEE---EEecCCCEEEEEEeccCC
Q 013241 227 TPE------------LRKAMGDAAVAAAASIGYIGVGTVEF---LLDERGSFYFMEMNTRIQ 273 (447)
Q Consensus 227 ~~~------------~~~~l~~~a~~i~~alg~~G~~~vEf---~~d~~G~~~~iEiNpR~~ 273 (447)
++. ..+++.+...++.+.+--..+..+|+ .+ .||+++.++.-..+-
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~l~~Ly~~F~~~D~tllEINPLv~-~dg~~~alDaK~~~D 219 (423)
T PLN02235 159 TSEICAPLIATLPLEIRGKIEEFIKGVFAVFQDLDFTFLEMNPFTL-VDGEPYPLDMRGELD 219 (423)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCeEEEecceEe-eCCCEEEEEeEEccc
Confidence 433 33344444555555443234444552 33 456666666544443
No 106
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=96.96 E-value=0.0054 Score=61.60 Aligned_cols=101 Identities=27% Similarity=0.358 Sum_probs=75.9
Q ss_pred HHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhC-CcEEEEeCCCCC----CcCeEEECCHHHHHHHHH
Q 013241 87 IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELG-FPVMIKATAGGG----GRGMRLAKEPDEFVKLLQ 161 (447)
Q Consensus 87 ~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig-~PvVvKP~~g~G----g~Gv~~v~~~~el~~~~~ 161 (447)
.+.++++|||++..+.+... +++.+.+.++| .|+|+|+---.| +-||+++.|.+|+.++.+
T Consensus 9 Kelf~~~GiPvp~g~v~~s~--------------eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~ 74 (387)
T COG0045 9 KELFAKYGIPVPPGYVATSP--------------EEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAE 74 (387)
T ss_pred HHHHHHcCCCCCCceeeeCH--------------HHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHH
Confidence 45688999999998888888 99999999998 899999953333 337999999999998888
Q ss_pred HHHHHHHH--hcC--CCcEEEeeccC-CCceEEEEEEEeCCCcEE
Q 013241 162 QAKSEAAA--AFG--NDGVYLEKYVQ-NPRHIEFQVLADKYGNVV 201 (447)
Q Consensus 162 ~~~~~~~~--~~~--~~~~lvEefI~-G~~ei~v~vl~d~~g~vv 201 (447)
........ ..| -..+|||++++ -.+|+=+.++-|......
T Consensus 75 ~~lg~~~q~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p 119 (387)
T COG0045 75 EILGKNYQTDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRP 119 (387)
T ss_pred HHhCcccccCcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcE
Confidence 77651100 001 25799999999 434888888888765433
No 107
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=96.78 E-value=0.0028 Score=59.18 Aligned_cols=99 Identities=24% Similarity=0.335 Sum_probs=65.9
Q ss_pred HHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCc-EEEEeCCCCC----CcCeEEECCHHHHHHHHH
Q 013241 87 IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFP-VMIKATAGGG----GRGMRLAKEPDEFVKLLQ 161 (447)
Q Consensus 87 ~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~P-vVvKP~~g~G----g~Gv~~v~~~~el~~~~~ 161 (447)
.+.++++||+++....+.+. +++.+.+.++|.| +||||---.| +-||.+++|++|+.++..
T Consensus 8 K~ll~~~gi~vp~g~~a~s~--------------eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~ 73 (202)
T PF08442_consen 8 KELLRKYGIPVPRGVVATSP--------------EEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAK 73 (202)
T ss_dssp HHHHHCTT----SEEEESSH--------------HHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHH
T ss_pred HHHHHHcCCCCCCeeecCCH--------------HHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHH
Confidence 35678899999999998888 9999999999875 7999954443 446899999999988877
Q ss_pred HHHHHHHH--hcC-----CCcEEEeeccCCCceEEEEEEEeCCCc
Q 013241 162 QAKSEAAA--AFG-----NDGVYLEKYVQNPRHIEFQVLADKYGN 199 (447)
Q Consensus 162 ~~~~~~~~--~~~-----~~~~lvEefI~G~~ei~v~vl~d~~g~ 199 (447)
+....... .-+ -..++||++++-.+|+=+.+.-|....
T Consensus 74 ~mlg~~l~T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~ 118 (202)
T PF08442_consen 74 EMLGKTLKTKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRESR 118 (202)
T ss_dssp TTTTSEEE-TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTTT
T ss_pred HHhCCceEeeecCCCCCEeeEEEEEecCccCceEEEEEEeccCCC
Confidence 65432100 000 146799999998889888888886543
No 108
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.0062 Score=60.00 Aligned_cols=176 Identities=18% Similarity=0.243 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHcCCCeeE----EEeccChhhHHHHHhc-------cccCH------HHHHHHhhhhCCcEEEEeCCCCC
Q 013241 81 EIAVRVIRTAHEMGIPCVA----VYSTIDKDALHVKLAD-------ESVCI------EEAVKLADELGFPVMIKATAGGG 143 (447)
Q Consensus 81 eia~ri~r~~~~lGi~~va----v~~~~dk~~~~~~lad-------~~v~i------~e~~~~~~~ig~PvVvKP~~g~G 143 (447)
|-=.-+.+.++..|||.+. +|...||.-.+..|.. +.+++ ..-......-.||+|||--.+..
T Consensus 172 ~d~rslvig~qyagiP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPnHK~m~s~~tyPvVVkvghahs 251 (488)
T KOG3895|consen 172 EDYRSLVIGLQYAGIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPNHKEMLSQPTYPVVVKVGHAHS 251 (488)
T ss_pred cchHHHHHHHHhcCCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecCCchhhccCCCCcEEEEeccccc
Confidence 3335677888889999874 3444566555544432 22332 11112223345999999999999
Q ss_pred CcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCC
Q 013241 144 GRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPS 223 (447)
Q Consensus 144 g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~ 223 (447)
|.|-.+|+|.+|+.+.-.-. ... +...-+|.||+...++.+|-++......+ |. + ...++|....+ +
T Consensus 252 GmGKiKV~Nh~dfqDi~svv-al~-----~Tyat~epFiDaKYDiriQKIG~nYKaym----Rt-s-IsgnWKtNtGS-a 318 (488)
T KOG3895|consen 252 GMGKIKVENHEDFQDIASVV-ALT-----KTYATAEPFIDAKYDIRIQKIGHNYKAYM----RT-S-ISGNWKTNTGS-A 318 (488)
T ss_pred ccceeeecchhhhHhHHHHH-HHH-----hhhhhccccccccceeehhhhhhhHHHHh----hh-h-hccCcccCchH-H
Confidence 99999999999988654322 111 24567899999877888887765431111 00 0 11122221111 0
Q ss_pred CCCCH-HHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEec
Q 013241 224 PALTP-ELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNT 270 (447)
Q Consensus 224 ~~l~~-~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNp 270 (447)
. |.. ..-++-..+...+-+.+|--.+|.|+.+..+||+=|++|+|-
T Consensus 319 m-LEQIamseRyklwvdtcse~fGgldICav~alhsKdGrd~i~eV~d 365 (488)
T KOG3895|consen 319 M-LEQIAMSERYKLWVDTCSEMFGGLDICAVKALHSKDGRDYIIEVMD 365 (488)
T ss_pred H-HHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeecccchhheeeecc
Confidence 0 110 112233345555666777667999999999999999999987
No 109
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=96.55 E-value=0.041 Score=47.62 Aligned_cols=114 Identities=16% Similarity=0.140 Sum_probs=72.6
Q ss_pred CcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccc
Q 013241 132 FPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 211 (447)
Q Consensus 132 ~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~ 211 (447)
-|++|||....-.--=.++.+.+++...- ....+..+++.+.++-..|+.+.++ +|+++.....
T Consensus 2 ~~~FiKP~~~~K~F~g~V~~~~~dl~~~~--------~~~~~~~V~vSe~v~~~~E~R~fi~---~g~vv~~s~Y----- 65 (130)
T PF14243_consen 2 RPVFIKPPDDDKSFTGRVFRSGEDLIGFG--------SLDPDTPVLVSEVVEIESEWRCFIV---DGEVVTGSPY----- 65 (130)
T ss_pred CCeEeCCCCCCCcceeEEEcchhhccccC--------CCCCCceEEEeceEeeeeeEEEEEE---CCEEEEEeec-----
Confidence 48999999855444444666666554111 1123578999999998889999988 4566665321
Q ss_pred cccceeeEecCCCCCCHHHHHHHHHHHHHHHHHc-CCccEeEEEEEEecCCCEEEEEEeccC
Q 013241 212 RRNQKLLEEAPSPALTPELRKAMGDAAVAAAASI-GYIGVGTVEFLLDERGSFYFMEMNTRI 272 (447)
Q Consensus 212 ~~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~al-g~~G~~~vEf~~d~~G~~~~iEiNpR~ 272 (447)
+.. .....+. ++.+.+.+.+++. ...-.+.+|+-++++|.++++|+|+=-
T Consensus 66 ~~~-------~~~~~~~----~~~~~~~~~~~~~~~~p~~~vlDvg~~~~G~~~lVE~N~~~ 116 (130)
T PF14243_consen 66 RGD-------WDLEPDP----DVVAFAIQALAAAWTLPPAYVLDVGVTDDGGWALVEANDGW 116 (130)
T ss_pred CCC-------cccCCCH----HHHHHHHHHHHhcccCCCeEEEEEEEeCCCCEEEEEecCcc
Confidence 111 1111233 3344445555533 233688899999988899999999954
No 110
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=95.20 E-value=0.17 Score=50.23 Aligned_cols=89 Identities=22% Similarity=0.292 Sum_probs=67.4
Q ss_pred HHHHHHhhhh--CCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCC
Q 013241 121 EEAVKLADEL--GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYG 198 (447)
Q Consensus 121 ~e~~~~~~~i--g~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g 198 (447)
+|+..+...+ +-||=+||..+.||+|-.++.+.++|+.++......... ...+++||-++...-+||.-+.-. |
T Consensus 124 ~DA~~A~~~LL~~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~~~~~~l~---~~GlVLE~~L~~~~T~SVGqv~v~-g 199 (355)
T PF11379_consen 124 EDARRAARRLLRDGPVRLKPVHATGGRGQQVVADADELDAALAALDDAELA---RHGLVLEEDLEEVVTYSVGQVRVA-G 199 (355)
T ss_pred HHHHHHHHHHhccCCeeeccCcccCCCCceEecCHHHHHHHHHcCCHHHHH---hCCEEEecccCCCceeeEEEEEEC-C
Confidence 7777766654 569999999999999999999999999999876544322 367999999999888899877653 3
Q ss_pred cEEEEeeeeeccccc
Q 013241 199 NVVHFGERDCSIQRR 213 (447)
Q Consensus 199 ~vv~l~~r~~s~~~~ 213 (447)
.++.++...+....+
T Consensus 200 ~~~SY~GtQ~lT~dn 214 (355)
T PF11379_consen 200 LVASYYGTQRLTRDN 214 (355)
T ss_pred EEEEEeeEeecccCC
Confidence 566665555443333
No 111
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.22 Score=51.86 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=36.4
Q ss_pred HHHHHHhhh-hCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCC
Q 013241 121 EEAVKLADE-LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN 184 (447)
Q Consensus 121 ~e~~~~~~~-ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G 184 (447)
+++++..++ -.--+||||....-|.||++++...++. .+.+++||+||+.
T Consensus 294 e~lrk~w~~nasr~wIVkppasaRg~gIrv~~kw~q~p--------------k~rpLvvQ~yieR 344 (662)
T KOG2156|consen 294 EELRKYWEKNASRLWIVKPPASARGIGIRVINKWSQFP--------------KDRPLVVQKYIER 344 (662)
T ss_pred HHHHHHHhhCccccEEecCcccccCcceEeccchhhCC--------------CcccHHHHHHhhc
Confidence 555555544 1222899999999999999999887653 1367788888875
No 112
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.17 Score=53.32 Aligned_cols=54 Identities=17% Similarity=0.302 Sum_probs=40.0
Q ss_pred CCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCC
Q 013241 131 GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNP 185 (447)
Q Consensus 131 g~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~ 185 (447)
....|+||....-|+|++++.+.+++...+....... ....++.+.++.||+.+
T Consensus 199 ~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~~-s~~~~~~~vv~~yi~~p 252 (497)
T KOG2157|consen 199 RSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSFI-SENNDEGYVVSAYIDRP 252 (497)
T ss_pred cceEEeccccccccceeEEecchhhhhhhhhcccccc-cccccccceeeeeccCc
Confidence 4679999999999999999999999887765322110 00125788999998863
No 113
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=91.81 E-value=0.31 Score=50.78 Aligned_cols=65 Identities=22% Similarity=0.384 Sum_probs=45.5
Q ss_pred HHHHHhhhhCCcEEEEeCCCCCCcCeEEE--CCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEe
Q 013241 122 EAVKLADELGFPVMIKATAGGGGRGMRLA--KEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLAD 195 (447)
Q Consensus 122 e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v--~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d 195 (447)
++.+++....--+|+||.++.||+||.+= .++++.+++++++. ++++++|||++- ....+..+.|
T Consensus 329 dL~~~~~a~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~--------~~~yilQe~v~~-~~~~~~~~~d 395 (445)
T PF14403_consen 329 DLVEFAIANRDRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEAA--------REPYILQEYVRP-PREPMPAFED 395 (445)
T ss_pred hHHHHHHhchhcEEeccccccCCCCeEECCcCCHHHHHHHHHHHh--------cCCcEEEEEecC-CccccccccC
Confidence 45555444445689999999999999874 46778777777654 368999999986 3333334433
No 114
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=91.55 E-value=5.7 Score=39.40 Aligned_cols=139 Identities=16% Similarity=0.171 Sum_probs=81.9
Q ss_pred HHHHHHhhhhCCcEEEEeCCCCC-------CcCeEEECCHHHHHHHHHHHH---HHHHHhcC------------CCcEEE
Q 013241 121 EEAVKLADELGFPVMIKATAGGG-------GRGMRLAKEPDEFVKLLQQAK---SEAAAAFG------------NDGVYL 178 (447)
Q Consensus 121 ~e~~~~~~~ig~PvVvKP~~g~G-------g~Gv~~v~~~~el~~~~~~~~---~~~~~~~~------------~~~~lv 178 (447)
+++.++++++|.-|+.|=.+.+- .-+--.|++..|+.-.+..-. ......|. ...+++
T Consensus 75 ~~I~~aI~~lgg~VfpKlNwsaPkDa~wi~~~~sl~c~~~~dv~lLLksSd~i~~DL~~~~~~~~~~~~~~~~~~~~LvL 154 (299)
T PF07065_consen 75 QEIREAIEELGGSVFPKLNWSAPKDAAWINPNNSLKCTSPSDVYLLLKSSDRIAHDLDHAFDECEDEDSPDESIPYELVL 154 (299)
T ss_pred HHHHHHHHHcCCeEEEecCcCCccccchhccCCCceeCCHHHHHHHHHhChHHHHHHHhhhhhcccccCCCCCCceEEEE
Confidence 56677788899889999776552 123347888888765554311 11111111 245778
Q ss_pred eeccCCC--ceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCHHHHHHHHHHH-HHHHHHcCCccEeEEEE
Q 013241 179 EKYVQNP--RHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAA-VAAAASIGYIGVGTVEF 255 (447)
Q Consensus 179 EefI~G~--~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~~~~~~l~~~a-~~i~~alg~~G~~~vEf 255 (447)
-+|..-. .|++|.|. +++++.+.-|++.+... + ....+++...|.+.. ..+...+... -+.+|+
T Consensus 155 rkw~~l~p~~EFRcFV~---~~~LiaISQr~~~~~~~---L------~~~~~~I~~~I~~F~~~~I~~~~~~~-~~v~DV 221 (299)
T PF07065_consen 155 RKWVNLNPSMEFRCFVR---NRKLIAISQRDLNYYDF---L------EELKEEIRSKIQEFFEEHIKPKFPLD-NYVFDV 221 (299)
T ss_pred eccccCCccceEEEEEE---CCEEEEEecccccccHH---H------HHHHHHHHHHHHHHHHHHHHhhCCCC-CEEEEE
Confidence 8887543 45555553 56888887766521111 0 002334444444444 2334455554 456999
Q ss_pred EEecC-CCEEEEEEeccC
Q 013241 256 LLDER-GSFYFMEMNTRI 272 (447)
Q Consensus 256 ~~d~~-G~~~~iEiNpR~ 272 (447)
.++.+ +++++||+||=-
T Consensus 222 yi~~~~~~v~LID~NPf~ 239 (299)
T PF07065_consen 222 YITRDKDKVWLIDFNPFG 239 (299)
T ss_pred EEcCCCCeEEEEEecCCc
Confidence 99976 789999999954
No 115
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=80.44 E-value=25 Score=33.90 Aligned_cols=92 Identities=17% Similarity=0.184 Sum_probs=66.7
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEec-----------------cChhhHHHHHhccccCH------------
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST-----------------IDKDALHVKLADESVCI------------ 120 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~-----------------~dk~~~~~~lad~~v~i------------ 120 (447)
|+.+|||.++..-+..+++.+.+.|+++...... .|...+...+.++++..
T Consensus 1 ~~~~IlvlgGT~egr~la~~L~~~g~~v~~Svat~~g~~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~i 80 (248)
T PRK08057 1 MMPRILLLGGTSEARALARALAAAGVDIVLSLAGRTGGPADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQI 80 (248)
T ss_pred CCceEEEEechHHHHHHHHHHHhCCCeEEEEEccCCCCcccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHH
Confidence 4678999999999999999999999876533221 25666677777776655
Q ss_pred -HHHHHHhhhhCCcEEE--EeCCCC-CCcCeEEECCHHHHHHHHH
Q 013241 121 -EEAVKLADELGFPVMI--KATAGG-GGRGMRLAKEPDEFVKLLQ 161 (447)
Q Consensus 121 -~e~~~~~~~ig~PvVv--KP~~g~-Gg~Gv~~v~~~~el~~~~~ 161 (447)
+.+.+.+++.+.|.+= .|..-. ...++..|.|.+|+.+.+.
T Consensus 81 s~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~~~v~s~~~a~~~l~ 125 (248)
T PRK08057 81 SANAAAACRALGIPYLRLERPSWLPQPGDRWIEVDDIEEAAEALA 125 (248)
T ss_pred HHHHHHHHHHhCCcEEEEeCCCcCCCCCCCEEEECCHHHHHHHhh
Confidence 7778888899998763 443321 3567889999988776654
No 116
>PRK04148 hypothetical protein; Provisional
Probab=78.62 E-value=5.5 Score=34.64 Aligned_cols=75 Identities=17% Similarity=0.257 Sum_probs=51.2
Q ss_pred cEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH-----------------------------HH
Q 013241 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI-----------------------------EE 122 (447)
Q Consensus 72 ~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i-----------------------------~e 122 (447)
+|+|+.+-| -...+++.+.++|..+.++....+.-... .+.++.. ..
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a---~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~ 93 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKA---KKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPF 93 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHH---HHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHH
Confidence 689999988 66678888889999988887655532211 1111111 56
Q ss_pred HHHHhhhhCCcEEEEeCCCCC-CcCeEEE
Q 013241 123 AVKLADELGFPVMIKATAGGG-GRGMRLA 150 (447)
Q Consensus 123 ~~~~~~~ig~PvVvKP~~g~G-g~Gv~~v 150 (447)
+.+.+++++-++++||..|-- .++++++
T Consensus 94 ~~~la~~~~~~~~i~~l~~e~~~~~~kl~ 122 (134)
T PRK04148 94 ILELAKKINVPLIIKPLSGEEPIKELKLI 122 (134)
T ss_pred HHHHHHHcCCCEEEEcCCCCCCCcceEEE
Confidence 677888999999999987653 3455444
No 117
>PF02843 GARS_C: Phosphoribosylglycinamide synthetase, C domain; InterPro: IPR020560 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the C-domain, which is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005480 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 2YW2_B 2YYA_A 3MJF_A 2IP4_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A 2YRW_A 2YS7_A ....
Probab=77.33 E-value=6.1 Score=32.00 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=28.5
Q ss_pred CccceEEEEEcCCHHHHHHHHHHhhhccEEecc
Q 013241 362 DSLLGKLIVWAPTREKAIERMKRALNDTIITGV 394 (447)
Q Consensus 362 ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G~ 394 (447)
+.++-.|++.|+|.+||.++++++++.+.+.|.
T Consensus 50 GGRvl~v~~~g~tl~eA~~~ay~~i~~I~~~g~ 82 (93)
T PF02843_consen 50 GGRVLTVVALGDTLEEAREKAYEAIEKIDFPGM 82 (93)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHHTTSB-TTE
T ss_pred CCeEEEEEEEcCCHHHHHHHHHHHHhccCCCCC
Confidence 345888999999999999999999999998863
No 118
>PRK05849 hypothetical protein; Provisional
Probab=75.32 E-value=1.5e+02 Score=33.55 Aligned_cols=132 Identities=12% Similarity=0.216 Sum_probs=76.7
Q ss_pred CCcEEEEeCCCC------CCcCeE--E--ECC--HHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEe---
Q 013241 131 GFPVMIKATAGG------GGRGMR--L--AKE--PDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLAD--- 195 (447)
Q Consensus 131 g~PvVvKP~~g~------Gg~Gv~--~--v~~--~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d--- 195 (447)
+-|++|+.+.-+ +..|.+ + |.. .++|..++..+...... ..+..++||+.+.+..---|-.-+|
T Consensus 55 ~~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~~~~~~L~~AI~~V~aS~~~-~~~~aVlVQ~MV~~~~~SGV~FTrdP~t 133 (783)
T PRK05849 55 ADKLIVRSSSRSEDSSSSSNAGAFLSILNVNADSKDQLLKAIEKVIASYGT-SKDDEILVQPMLEDIVLSGVAMSRDPES 133 (783)
T ss_pred CCeEEEECCCcccCCCcCccccCceeEecCCCCcHHHHHHHHHHHHHhhCC-CCCCeEEEEeCccCCCceEEEEECCCCC
Confidence 468999975422 333433 3 223 34888888887755321 2446799999997411111111122
Q ss_pred ------------CCCcEEEEeeeeeccccccceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCE
Q 013241 196 ------------KYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSF 263 (447)
Q Consensus 196 ------------~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~ 263 (447)
+.|.-+.-|.+. ..+.+........++++...++.+.+.++=+.+|.. +-.|||-+|++|++
T Consensus 134 g~~~~~iey~~~G~ge~VVsG~~t-----~~~~~~~~~~~~~l~p~~~~~L~~la~~LE~~fg~d-pqDIEfaid~~g~L 207 (783)
T PRK05849 134 GAPYYVINYDESGSTDSVTSGSGG-----SATTVYHYRDALVFKPPRLKKLIELIRELEALFGCD-FLDIEFAIDEKEEL 207 (783)
T ss_pred CCCceEEEEcCCCCCcceecccCC-----CCceeeeccccccCCHHHHHHHHHHHHHHHHHcCCC-CeeeEEEEccCCEE
Confidence 111111111110 011111111123377888899999999998888864 88999999888999
Q ss_pred EEEEEe
Q 013241 264 YFMEMN 269 (447)
Q Consensus 264 ~~iEiN 269 (447)
|++-+=
T Consensus 208 ~lLQ~R 213 (783)
T PRK05849 208 YILQVR 213 (783)
T ss_pred EEEEcc
Confidence 999863
No 119
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=69.37 E-value=22 Score=34.39 Aligned_cols=86 Identities=19% Similarity=0.271 Sum_probs=57.8
Q ss_pred EEEEecC-cHHHHHHHHHHHHcCCCeeEEEecc-------------------ChhhHHHHHhccccCH------------
Q 013241 73 KILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI-------------------DKDALHVKLADESVCI------------ 120 (447)
Q Consensus 73 kvLianr-geia~ri~r~~~~lGi~~vav~~~~-------------------dk~~~~~~lad~~v~i------------ 120 (447)
||||+++ || +.++++.+.+.|.++....... |...+...+.++++..
T Consensus 2 ~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~i 80 (256)
T TIGR00715 2 TVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHPFAAQI 80 (256)
T ss_pred eEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHHH
Confidence 7899998 66 9999999999998766443322 2233333444443333
Q ss_pred -HHHHHHhhhhCCcEE--EEeCCCCCCcCeEEECCHHHHHHHH
Q 013241 121 -EEAVKLADELGFPVM--IKATAGGGGRGMRLAKEPDEFVKLL 160 (447)
Q Consensus 121 -~e~~~~~~~ig~PvV--vKP~~g~Gg~Gv~~v~~~~el~~~~ 160 (447)
..+.+.+++.|.|.+ ..|.+ ..+.++..|.|.+|+.+.+
T Consensus 81 s~~a~~a~~~~~ipylR~eR~~~-~~~~~~~~v~~~~ea~~~~ 122 (256)
T TIGR00715 81 TTNATAVCKELGIPYVRFERPPL-ALGKNIIEVPDIEEATRVA 122 (256)
T ss_pred HHHHHHHHHHhCCcEEEEECCCC-CCCCCeEEeCCHHHHHHHh
Confidence 667778888898875 45554 3566788899988876544
No 120
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=67.30 E-value=8.2 Score=38.82 Aligned_cols=59 Identities=22% Similarity=0.326 Sum_probs=30.5
Q ss_pred HcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHH-HHHHHHHHHHH
Q 013241 92 EMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPD-EFVKLLQQAKS 165 (447)
Q Consensus 92 ~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~-el~~~~~~~~~ 165 (447)
++=++.+..+.|.|. ++.....+.+. -+||||++|.||+|+.+-.+.. |..+.++++..
T Consensus 263 ellL~~VpT~~cg~~--------------~~~~~Vl~~l~-~lvvKp~~g~gg~~~~~G~~~s~e~~~~~~~I~~ 322 (330)
T PF04174_consen 263 ELLLPNVPTWWCGDP--------------EDREYVLANLD-ELVVKPADGYGGKGVYIGPKLSAERRALRAEILA 322 (330)
T ss_dssp --SSEE---EETTSH--------------HHHHHHHHSGG-GEEEEE--------EEEGGG--HHHHHHHHHHHH
T ss_pred CcccCCCCcEeCCCH--------------HHHHHHHhchh-hcEEEecCCCCCCcceeCCcCCHHHHHHHHHHHh
Confidence 344677889999998 66666666554 5899999999999998754433 55566655543
No 121
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=66.95 E-value=92 Score=27.60 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=30.1
Q ss_pred CccccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEE
Q 013241 65 LKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAV 100 (447)
Q Consensus 65 ~~~~~~~~kvLianrgeia~ri~r~~~~lGi~~vav 100 (447)
+.++..-++|||.+.|++|.+.++.+.+.|..+..+
T Consensus 7 ~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI 42 (157)
T PRK06719 7 LMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVV 42 (157)
T ss_pred eEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 445555689999999999999999999999876655
No 122
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=66.61 E-value=17 Score=30.79 Aligned_cols=77 Identities=22% Similarity=0.256 Sum_probs=45.3
Q ss_pred EEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhh------------HHHH---HhccccCH-------HHHHHHhhhh
Q 013241 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDA------------LHVK---LADESVCI-------EEAVKLADEL 130 (447)
Q Consensus 73 kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~------------~~~~---lad~~v~i-------~e~~~~~~~i 130 (447)
||.=.+-|. -..+++.++++|+.+.++....+... +... -|+.-+++ ..+.+.+..+
T Consensus 16 kVvEVGiG~-~~~VA~~L~e~g~dv~atDI~~~~a~~g~~~v~DDitnP~~~iY~~A~lIYSiRpppEl~~~ildva~aV 94 (129)
T COG1255 16 KVVEVGIGF-FLDVAKRLAERGFDVLATDINEKTAPEGLRFVVDDITNPNISIYEGADLIYSIRPPPELQSAILDVAKAV 94 (129)
T ss_pred cEEEEccch-HHHHHHHHHHcCCcEEEEecccccCcccceEEEccCCCccHHHhhCccceeecCCCHHHHHHHHHHHHhh
Confidence 444343331 24678888999999888876554211 0000 01111222 5567778899
Q ss_pred CCcEEEEeCCCCC-CcCeEEE
Q 013241 131 GFPVMIKATAGGG-GRGMRLA 150 (447)
Q Consensus 131 g~PvVvKP~~g~G-g~Gv~~v 150 (447)
|-|+++||..|-- -++++++
T Consensus 95 ga~l~I~pL~Ge~vp~~mklv 115 (129)
T COG1255 95 GAPLYIKPLTGEPVPVEMKLV 115 (129)
T ss_pred CCCEEEEecCCCCCccceEEE
Confidence 9999999987653 3455544
No 123
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=66.11 E-value=2.1 Score=42.88 Aligned_cols=115 Identities=18% Similarity=0.174 Sum_probs=68.6
Q ss_pred HHHHHHHHHHcCCCeeEEEeccC------hhhHHHHHhccccCH----------HHHHHHhhhhCCcEEEEeCCCCCCcC
Q 013241 83 AVRVIRTAHEMGIPCVAVYSTID------KDALHVKLADESVCI----------EEAVKLADELGFPVMIKATAGGGGRG 146 (447)
Q Consensus 83 a~ri~r~~~~lGi~~vav~~~~d------k~~~~~~lad~~v~i----------~e~~~~~~~ig~PvVvKP~~g~Gg~G 146 (447)
+..++++++..|..+..++...+ +...+..+....+.+ ..+..+++.+|+|++.||..++.+.+
T Consensus 23 a~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~m 102 (317)
T COG1181 23 AKAVLRALKGFGYDVTPVDITEAGLWMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAM 102 (317)
T ss_pred HHHHHHHHhhcCceeEEEeccccceEEeccccchhhcccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhcc
Confidence 67788888888877665554432 222222223322222 66777888999999999999998888
Q ss_pred eEEECC----HHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEE
Q 013241 147 MRLAKE----PDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVH 202 (447)
Q Consensus 147 v~~v~~----~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~ 202 (447)
..+... .+.+..+...+.... ...++++|+|.++ ..+.+-|..+..|-.+.
T Consensus 103 dk~~~K~~~~~~g~~~a~~~~~~~~----~~~~~~~e~~~~~-l~~p~~Vkp~~~gSSvg 157 (317)
T COG1181 103 DKIVTKRLFKAEGLPVAPYVALTRD----EYSSVIVEEVEEG-LGFPLFVKPAREGSSVG 157 (317)
T ss_pred cHHHHHHHHHHCCCCccceeeeecc----cchhHHHHHhhcc-cCCCEEEEcCCccceee
Confidence 754221 222222211111110 0046788888888 78888888776654443
No 124
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=65.94 E-value=11 Score=38.19 Aligned_cols=52 Identities=27% Similarity=0.357 Sum_probs=37.8
Q ss_pred c-EEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcC---CCcEEEeeccCC
Q 013241 133 P-VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG---NDGVYLEKYVQN 184 (447)
Q Consensus 133 P-vVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~---~~~~lvEefI~G 184 (447)
| ||||+..|.-|.||..|++.+|+...=.+.+..-...-+ -..+||||=|.-
T Consensus 258 PfViVKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T 313 (403)
T TIGR02049 258 PYVIVKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYT 313 (403)
T ss_pred CeEEEEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcce
Confidence 5 789999999999999999999998765554433221111 257899986654
No 125
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=62.15 E-value=1.3e+02 Score=27.78 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=28.7
Q ss_pred CccccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEE
Q 013241 65 LKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAV 100 (447)
Q Consensus 65 ~~~~~~~~kvLianrgeia~ri~r~~~~lGi~~vav 100 (447)
+.++..-+++||.+.|++|.+.++.+.+.|..+..+
T Consensus 4 l~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VI 39 (202)
T PRK06718 4 LMIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVI 39 (202)
T ss_pred eEEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 344555689999999999999999999999654433
No 126
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=61.34 E-value=14 Score=29.31 Aligned_cols=29 Identities=38% Similarity=0.642 Sum_probs=25.5
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeE
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVA 99 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~va 99 (447)
..+|+--+.|++|.+|.+.++++|||++.
T Consensus 17 aP~VvAKG~g~~A~~I~~~A~e~~VPi~~ 45 (82)
T TIGR00789 17 APKVVASGVGEVAERIIEIAKKHGIPIVE 45 (82)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHcCCCEEe
Confidence 46888888999999999999999999653
No 127
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=57.67 E-value=1.1e+02 Score=29.39 Aligned_cols=91 Identities=20% Similarity=0.246 Sum_probs=64.7
Q ss_pred cEEEEecCcHHHHHHHHHHHHcCC---Cee---------------EEEec--cChhhHHHHHhccccCH-----------
Q 013241 72 EKILVANRGEIAVRVIRTAHEMGI---PCV---------------AVYST--IDKDALHVKLADESVCI----------- 120 (447)
Q Consensus 72 ~kvLianrgeia~ri~r~~~~lGi---~~v---------------av~~~--~dk~~~~~~lad~~v~i----------- 120 (447)
.||||+++..-+..+++.+.+.|. .++ .+..- .|...+...+.++++..
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~v~~sv~t~~g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~ 80 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGYVIVSVATSYGGELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAE 80 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCCEEEEEEhhhhHhhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHH
Confidence 479999999999999999999995 221 11111 16667777777776655
Q ss_pred --HHHHHHhhhhCCcEE--EEeCCCCC-CcCeEEECCHHHHHHHHHH
Q 013241 121 --EEAVKLADELGFPVM--IKATAGGG-GRGMRLAKEPDEFVKLLQQ 162 (447)
Q Consensus 121 --~e~~~~~~~ig~PvV--vKP~~g~G-g~Gv~~v~~~~el~~~~~~ 162 (447)
+.+.+.+++.|.|++ ..|..-.. +.++..|+|.+|+.+.+.+
T Consensus 81 is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~ 127 (249)
T PF02571_consen 81 ISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKE 127 (249)
T ss_pred HHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhh
Confidence 677788889999976 44544332 5669999999998877744
No 128
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=57.23 E-value=30 Score=34.97 Aligned_cols=66 Identities=27% Similarity=0.335 Sum_probs=51.3
Q ss_pred HHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCC-cEEEEeCCCCC-----------CcCeEEECC
Q 013241 85 RVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGF-PVMIKATAGGG-----------GRGMRLAKE 152 (447)
Q Consensus 85 ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~-PvVvKP~~g~G-----------g~Gv~~v~~ 152 (447)
|=.+.+++.|+.++..+...+. +|+.+.+.++|- -+|||+-.-.| -.||++|.+
T Consensus 29 ~~~~ll~~~Gv~vp~g~vA~sp--------------eEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~ 94 (434)
T KOG2799|consen 29 RSAALLRKYGINVPLGYVAKSP--------------EEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFS 94 (434)
T ss_pred HHHHHHHHcCCCCCCCcccCCH--------------HHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEeC
Confidence 3356788999999999999998 999999999874 59999954333 246789999
Q ss_pred HHHHHHHHHHHH
Q 013241 153 PDEFVKLLQQAK 164 (447)
Q Consensus 153 ~~el~~~~~~~~ 164 (447)
++|.+..-.+..
T Consensus 95 p~Eak~va~qmi 106 (434)
T KOG2799|consen 95 PQEAKAVASQMI 106 (434)
T ss_pred hHHHHHHHHHhh
Confidence 998877665544
No 129
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=56.75 E-value=42 Score=28.77 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=30.3
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccCh
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk 106 (447)
.-+++||.+.|.+|..++..+.++|+..+.+.. ++.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~n-Rt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVN-RTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEE-SSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEE-CCH
Confidence 358999999999999999999999999666544 444
No 130
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=56.34 E-value=1.4e+02 Score=28.87 Aligned_cols=92 Identities=15% Similarity=0.182 Sum_probs=68.6
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEE------------------EeccChhhHHHHHhccccCH------------
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAV------------------YSTIDKDALHVKLADESVCI------------ 120 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav------------------~~~~dk~~~~~~lad~~v~i------------ 120 (447)
+.+|||+++..=+..+++.+...+...... .-.-++..+...+.++++.+
T Consensus 2 ~~~ilvlGGT~Dar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~~~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~i 81 (257)
T COG2099 2 MMRILLLGGTSDARALAKKLAAAPVDIILSSLTGYGAKLAEQIGPVRVGGFLGAEGLAAFLREEGIDLLIDATHPYAARI 81 (257)
T ss_pred CceEEEEeccHHHHHHHHHhhccCccEEEEEcccccccchhccCCeeecCcCCHHHHHHHHHHcCCCEEEECCChHHHHH
Confidence 468999999989999999988887322111 11235677778888888776
Q ss_pred -HHHHHHhhhhCCcEEE--EeCCCCCCcCeEEECCHHHHHHHHHH
Q 013241 121 -EEAVKLADELGFPVMI--KATAGGGGRGMRLAKEPDEFVKLLQQ 162 (447)
Q Consensus 121 -~e~~~~~~~ig~PvVv--KP~~g~Gg~Gv~~v~~~~el~~~~~~ 162 (447)
+.+.+.+++.|.|.+- .|.+-..|.....|.|.+|+.+...+
T Consensus 82 S~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~ 126 (257)
T COG2099 82 SQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQ 126 (257)
T ss_pred HHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhc
Confidence 7788889999999764 56555558999999999998877654
No 131
>PRK14686 hypothetical protein; Provisional
Probab=55.62 E-value=36 Score=28.87 Aligned_cols=44 Identities=20% Similarity=0.278 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHcCC-------c-cEeEEEEEEecCCCEEEEEEeccCCCc
Q 013241 232 KAMGDAAVAAAASIGY-------I-GVGTVEFLLDERGSFYFMEMNTRIQVE 275 (447)
Q Consensus 232 ~~l~~~a~~i~~alg~-------~-G~~~vEf~~d~~G~~~~iEiNpR~~g~ 275 (447)
..-++.|.+.++..|| + ..+.+|++..+++.++|+||-+|-+..
T Consensus 9 ~~gE~~A~~~L~~~Gy~il~rN~r~~~GEIDlIa~~~~~lvFVEVKtR~~~~ 60 (119)
T PRK14686 9 KEGEDLAVEFLIKKGYTILERNYRFQKAEIDIIAQKGNILVIVEVKTRSSSD 60 (119)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCCCCcEEEEECcCCEEEEEEEEecCCCC
Confidence 3456777778887765 3 567899999877889999999997643
No 132
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=55.41 E-value=9.2 Score=38.83 Aligned_cols=51 Identities=25% Similarity=0.315 Sum_probs=31.1
Q ss_pred EEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcC---CCcEEEeeccCC
Q 013241 134 VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG---NDGVYLEKYVQN 184 (447)
Q Consensus 134 vVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~---~~~~lvEefI~G 184 (447)
|+||+..|.-|.||..|++.+|+...=.+.+..-...-+ -..+||||=|.-
T Consensus 263 V~VKAD~GTYGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T 316 (404)
T PF08886_consen 263 VFVKADAGTYGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVSEVIIQEGVYT 316 (404)
T ss_dssp EEEEEE-GGG-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---EEEEEE----
T ss_pred EEEEcCCCCCCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccceeEEecCcch
Confidence 789999999999999999999997665554443322221 258999996654
No 133
>PRK14674 hypothetical protein; Provisional
Probab=52.99 E-value=38 Score=29.41 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHcCC-------c-cEeEEEEEEecCCCEEEEEEeccCCCc
Q 013241 233 AMGDAAVAAAASIGY-------I-GVGTVEFLLDERGSFYFMEMNTRIQVE 275 (447)
Q Consensus 233 ~l~~~a~~i~~alg~-------~-G~~~vEf~~d~~G~~~~iEiNpR~~g~ 275 (447)
.-++.|.+.++.-|| + +.+.+|++..+++.++|+||-+|-+..
T Consensus 10 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~LVFVEVK~R~~~~ 60 (133)
T PRK14674 10 WAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGN 60 (133)
T ss_pred HHHHHHHHHHHHCCCEEeEEeeecCCCCEeEEEEeCCEEEEEEEEecCCCC
Confidence 345677777777765 3 567899999877789999999998644
No 134
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=52.56 E-value=14 Score=25.67 Aligned_cols=21 Identities=33% Similarity=0.271 Sum_probs=18.8
Q ss_pred EEEEcCCHHHHHHHHHHhhhc
Q 013241 368 LIVWAPTREKAIERMKRALND 388 (447)
Q Consensus 368 vi~~g~~~~eA~~~~~~al~~ 388 (447)
+++.|+|.+||+++++.++..
T Consensus 24 ~~t~G~t~eea~~~~~eal~~ 44 (48)
T PF03681_consen 24 CFTQGDTLEEALENAKEALEL 44 (48)
T ss_dssp CEEEESSHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHH
Confidence 569999999999999999864
No 135
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=50.72 E-value=4.3e+02 Score=30.12 Aligned_cols=43 Identities=23% Similarity=0.316 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEec-CCCEEEEEEe
Q 013241 225 ALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE-RGSFYFMEMN 269 (447)
Q Consensus 225 ~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~-~G~~~~iEiN 269 (447)
.++++...+|.+.+.++-+.+|. +-.|||-+++ +|++|++..=
T Consensus 288 ~L~~~~l~~La~l~~~lE~~fg~--pqDIEWai~~~~g~l~ILQaR 331 (795)
T PRK06464 288 SLTDEEVLELAKQAVIIEKHYGR--PMDIEWAKDGDDGKLYIVQAR 331 (795)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC--CceeEEEEECCCCcEEEEEee
Confidence 37888899999999999999886 7899999985 6899999953
No 136
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=50.06 E-value=17 Score=28.00 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=22.8
Q ss_pred ceEEEEEcCCHHHHHHHHHHhhhccE
Q 013241 365 LGKLIVWAPTREKAIERMKRALNDTI 390 (447)
Q Consensus 365 lg~vi~~g~~~~eA~~~~~~al~~~~ 390 (447)
++-|+..|+|.++|+++|.+-.+++-
T Consensus 17 l~iv~~~~~d~d~Al~eM~e~A~~lG 42 (74)
T TIGR03884 17 LGIVSTESDNVDEIVENLREKVKAKG 42 (74)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHcC
Confidence 88899999999999999998777653
No 137
>PRK14680 hypothetical protein; Provisional
Probab=49.94 E-value=56 Score=28.36 Aligned_cols=43 Identities=23% Similarity=0.283 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHcCC-------c-cEeEEEEEEecCCCEEEEEEeccCCC
Q 013241 232 KAMGDAAVAAAASIGY-------I-GVGTVEFLLDERGSFYFMEMNTRIQV 274 (447)
Q Consensus 232 ~~l~~~a~~i~~alg~-------~-G~~~vEf~~d~~G~~~~iEiNpR~~g 274 (447)
..-++.|.+.++.-|| + ..+.+|++..+++.++|+||-+|-+.
T Consensus 10 ~~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~lVFVEVKtR~~~ 60 (134)
T PRK14680 10 QHGEDAAAALLQRTGHRILARNWRHGGLELDIVCEDGDTIVFVEVKTRAAH 60 (134)
T ss_pred HHHHHHHHHHHHHCCCEEEEeecCCCCCeEEEEEEeCCEEEEEEEEecCCC
Confidence 3445677777777765 3 56789999887778999999999754
No 138
>PRK06988 putative formyltransferase; Provisional
Probab=49.42 E-value=77 Score=31.58 Aligned_cols=59 Identities=19% Similarity=0.312 Sum_probs=45.0
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEE
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMI 136 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVv 136 (447)
|.||++.+.++.+....+.+.+.|+.++.+.+..|+..- .+....+.+.+.+.|.|++.
T Consensus 2 ~mkIvf~Gs~~~a~~~L~~L~~~~~~i~~Vvt~~d~~~~-------~~~~~~v~~~A~~~gip~~~ 60 (312)
T PRK06988 2 KPRAVVFAYHNVGVRCLQVLLARGVDVALVVTHEDNPTE-------NIWFGSVAAVAAEHGIPVIT 60 (312)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhCCCCEEEEEcCCCCCcc-------CcCCCHHHHHHHHcCCcEEc
Confidence 458999999999999999999999998888887665321 11114667788888888764
No 139
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=49.30 E-value=44 Score=30.15 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=29.4
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccC
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~d 105 (447)
.-++|.|.+-|.|+..+++.++.+|.++..+.....
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~ 70 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPK 70 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCH
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCC
Confidence 358999999999999999999999997776655443
No 140
>PRK14688 hypothetical protein; Provisional
Probab=47.59 E-value=57 Score=27.80 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCC-------c-cEeEEEEEEecCCCEEEEEEeccCCC
Q 013241 233 AMGDAAVAAAASIGY-------I-GVGTVEFLLDERGSFYFMEMNTRIQV 274 (447)
Q Consensus 233 ~l~~~a~~i~~alg~-------~-G~~~vEf~~d~~G~~~~iEiNpR~~g 274 (447)
.-++.|.+.++.-|| + +.+.+|++..+++.++|+||-+|-+.
T Consensus 11 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~lVFVEVK~R~~~ 60 (121)
T PRK14688 11 FGEKLAAEYLKGMGYSIIQTNCRLPEGEIDIVGQDGEYLVFIEVRTKRRL 60 (121)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeeCCCCcEeEEEeeCCEEEEEEEEecCCC
Confidence 445677777777764 3 56889999987778999999999764
No 141
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=47.02 E-value=1e+02 Score=32.99 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=38.5
Q ss_pred cCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcE-EEEeC
Q 013241 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPV-MIKAT 139 (447)
Q Consensus 69 ~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~Pv-VvKP~ 139 (447)
.+-.||+|.+.|-++...+++++.+|..+.++... .+.++.++++|--. .+.+.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~-----------------~~rle~aeslGA~~v~i~~~ 217 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTR-----------------PEVAEQVESMGAEFLELDFE 217 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCC-----------------HHHHHHHHHcCCeEEEeccc
Confidence 45689999999999999999999999854443322 34456667777653 35443
No 142
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=46.31 E-value=33 Score=35.71 Aligned_cols=59 Identities=25% Similarity=0.427 Sum_probs=41.9
Q ss_pred CCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEE--ECCHHHHHHHHHHHHHHH
Q 013241 94 GIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRL--AKEPDEFVKLLQQAKSEA 167 (447)
Q Consensus 94 Gi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~--v~~~~el~~~~~~~~~~~ 167 (447)
-++.+.++.|..+ ++....+..+. -+||||+.|+||.|+-+ .-+.+|+.+..+++...-
T Consensus 343 lL~nv~T~~c~~~--------------~el~~VL~~l~-~lViK~~~~~gg~~~lvGpa~s~~e~a~~~~~i~a~p 403 (488)
T COG2308 343 LLPNVPTYWCGEP--------------DELEHVLANLS-ELVIKPVEGSGGYGMLVGPAASKAELAAFAERIKADP 403 (488)
T ss_pred ccCCCCeeecCCH--------------HHHHHHHhchh-hheEeeeccCCCCcceeccccCHHHHHHHHHHHHhCh
Confidence 3566777777777 66666666553 48999999988888765 456777777777766543
No 143
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=46.29 E-value=24 Score=35.53 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=19.6
Q ss_pred cEeEEEEEEecCCCEEEEEEeccCCCc
Q 013241 249 GVGTVEFLLDERGSFYFMEMNTRIQVE 275 (447)
Q Consensus 249 G~~~vEf~~d~~G~~~~iEiNpR~~g~ 275 (447)
-+..+||..+++|++++||.|+|..++
T Consensus 69 ~~~g~Dl~r~~dG~w~VleDn~~~PsG 95 (330)
T PF04174_consen 69 HFYGADLVRDPDGRWRVLEDNTRAPSG 95 (330)
T ss_dssp SEEEEEEEE-SSS-EEEEEEE-SS---
T ss_pred EEEEEeeeECCCCCEEEEEecCCCCcH
Confidence 488899999999999999999999865
No 144
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=46.12 E-value=1.9e+02 Score=30.96 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=26.5
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEE
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAV 100 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav 100 (447)
+-.|++|.+.|.++...++.++.+|..+..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~ 193 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAF 193 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 4589999999999999999999999764443
No 145
>TIGR00252 conserved hypothetical protein TIGR00252. the scores for Mycobacterium tuberculosis and Treponema pallidum are low considering the alignment
Probab=46.01 E-value=66 Score=27.31 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCC-------c-cEeEEEEEEecCCCEEEEEEeccCCC
Q 013241 233 AMGDAAVAAAASIGY-------I-GVGTVEFLLDERGSFYFMEMNTRIQV 274 (447)
Q Consensus 233 ~l~~~a~~i~~alg~-------~-G~~~vEf~~d~~G~~~~iEiNpR~~g 274 (447)
.-++.|.+.++.-|| + ..+.+|++..+++.++|+||-+|-+.
T Consensus 11 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~lvFVEVK~R~~~ 60 (119)
T TIGR00252 11 AGESQARAWLEQKGLKFIAANWNSPWGEIDLIMHDTKTIAFVEVRTRSGG 60 (119)
T ss_pred HHHHHHHHHHHHCCCEEeEEEecCCCCcEEEEEeeCCEEEEEEEEecCCC
Confidence 445677777777764 4 56789999987778999999999754
No 146
>PRK14684 hypothetical protein; Provisional
Probab=45.11 E-value=74 Score=27.03 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHcCC-------c-cEeEEEEEEecCCCEEEEEEeccCCC
Q 013241 232 KAMGDAAVAAAASIGY-------I-GVGTVEFLLDERGSFYFMEMNTRIQV 274 (447)
Q Consensus 232 ~~l~~~a~~i~~alg~-------~-G~~~vEf~~d~~G~~~~iEiNpR~~g 274 (447)
..-++.|.+.++.-|| + ..+.+|++..+++.++|+||-+|-+.
T Consensus 10 ~~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~lvFVEVK~R~~~ 60 (120)
T PRK14684 10 FNAEKTACRYLQKQGLSFITKNFRYKQGEIDLIMSDQSMLVFIEVRYRRFS 60 (120)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCCCCeEEEEEEeCCEEEEEEEeEcCCC
Confidence 3445677777777765 3 56789999987778999999999754
No 147
>TIGR00637 ModE_repress ModE molybdate transport repressor domain. ModE is a molybdate-activated repressor of the molybdate transport operon in E. coli. It consists of the domain represented by this model and two tandem copies of mop-like domain, where Mop proteins are a family of 68-residue molybdenum-pterin binding proteins of Clostridium pasteurianum. This model also represents the full length of a pair of archaeal proteins that lack Mop-like domains. PSI-BLAST analysis shows similarity to helix-turn-helix regulatory proteins.
Probab=45.08 E-value=51 Score=26.90 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=33.6
Q ss_pred HHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHH
Q 013241 122 EAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSE 166 (447)
Q Consensus 122 e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~ 166 (447)
.+...-+.+|.|++.+-..|.+|+|+..-..-+++...++.+...
T Consensus 36 ~I~~LE~~lg~~Lf~R~~~g~~~~g~~lT~~G~~l~~~~~~~~~~ 80 (99)
T TIGR00637 36 YIRAMNNLSGEPLVERATGGKGGGGAVLTEYGQRLIQLYDLLERI 80 (99)
T ss_pred HHHHHHHHhCCCeEEecCCCCCCCCeeECHHHHHHHHHHHHHHHH
Confidence 334444578999999999888899999887777776666655443
No 148
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=44.94 E-value=8.9 Score=42.23 Aligned_cols=86 Identities=16% Similarity=0.261 Sum_probs=47.4
Q ss_pred CcEEEeeccCC-CceEEEEEEEeCCCcEEEEeee-----eeccccc-cceeeEecCCCCCCHHHHHHHHHHHHHHHHHcC
Q 013241 174 DGVYLEKYVQN-PRHIEFQVLADKYGNVVHFGER-----DCSIQRR-NQKLLEEAPSPALTPELRKAMGDAAVAAAASIG 246 (447)
Q Consensus 174 ~~~lvEefI~G-~~ei~v~vl~d~~g~vv~l~~r-----~~s~~~~-~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg 246 (447)
+.++-|||++- +..+-|..++-. ..|.-.| |-.+.|. +.|-+. .|.. ++++.. .+|.+++-+++
T Consensus 229 GSyIYEeFMptdgtDVKvYTVGp~---YaHAEaRKSPvvDGkV~Rns~GKEvR-Ypv~-Ls~~EK----~iA~KVciAF~ 299 (1018)
T KOG1057|consen 229 GSYIYEEFMPTDGTDVKVYTVGPD---YAHAEARKSPVVDGKVERNSDGKEVR-YPVI-LNSSEK----QIARKVCIAFK 299 (1018)
T ss_pred cceehhhhcCCCCccceEEeeCcc---hhhhhhccCccccceeeecCCCceee-ceee-cChhhH----HHHhHHHhhcc
Confidence 68999999985 344444444321 1121111 1111121 112111 2333 555443 56777777776
Q ss_pred CccEeEEEEEEecCCCEEEEEEec
Q 013241 247 YIGVGTVEFLLDERGSFYFMEMNT 270 (447)
Q Consensus 247 ~~G~~~vEf~~d~~G~~~~iEiNp 270 (447)
= -++++|++. .+|.-|++++|.
T Consensus 300 Q-~VCGFDLLR-a~G~SYVcDVNG 321 (1018)
T KOG1057|consen 300 Q-TVCGFDLLR-ANGKSYVCDVNG 321 (1018)
T ss_pred c-cccchHHhh-cCCceEEEeccc
Confidence 4 477888876 468899999986
No 149
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=44.71 E-value=14 Score=38.53 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=28.3
Q ss_pred HHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHH
Q 013241 121 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVK 158 (447)
Q Consensus 121 ~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~ 158 (447)
.+..+..+...-++|+||..|.-|.|++.+.+..+..+
T Consensus 216 ~df~a~~~~~KrtfivkpDsgaqg~giylisDir~~g~ 253 (565)
T KOG2158|consen 216 CDFPASTEIMKRTFIVKPDSGAQGSGIYLISDIREKGE 253 (565)
T ss_pred HHHHHHHHHhcccEEECCCCCCCCcceeeechhhhhhH
Confidence 34444455556699999999999999999976665443
No 150
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=44.25 E-value=91 Score=23.58 Aligned_cols=50 Identities=22% Similarity=0.293 Sum_probs=32.0
Q ss_pred EEEEecCcH----HHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEE
Q 013241 73 KILVANRGE----IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMI 136 (447)
Q Consensus 73 kvLianrge----ia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVv 136 (447)
+|+|+.-++ .|..+++.+++.|+.+.......+. ......+...|+|.++
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~~~~--------------~~~~~~a~~~~~~~~i 56 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGGRKL--------------KKQFKYADRSGARFAV 56 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCCCCH--------------HHHHHHHHHcCCCEEE
Confidence 456665332 5888999999999976443332232 4556667778888544
No 151
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=44.19 E-value=59 Score=32.03 Aligned_cols=63 Identities=13% Similarity=0.184 Sum_probs=41.7
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcC--CCeeEEEeccChhhHHHHHhccccCH---------HHHHHHhhhhCCcEEE
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMG--IPCVAVYSTIDKDALHVKLADESVCI---------EEAVKLADELGFPVMI 136 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lG--i~~vav~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~PvVv 136 (447)
|.||||++.|... .+++.+++.| +.++.+... ..+.....+|+.+.+ +.+.+.+++....+++
T Consensus 1 ~~~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~d~~--~~~~~~~~~d~~~~~p~~~~~~~~~~l~~~~~~~~id~ii 74 (326)
T PRK12767 1 MMNILVTSAGRRV-QLVKALKKSLLKGRVIGADIS--ELAPALYFADKFYVVPKVTDPNYIDRLLDICKKEKIDLLI 74 (326)
T ss_pred CceEEEecCCccH-HHHHHHHHhccCCEEEEECCC--CcchhhHhccCcEecCCCCChhHHHHHHHHHHHhCCCEEE
Confidence 5689999988666 8899999995 887776554 334444566644332 4555666666655554
No 152
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=43.88 E-value=92 Score=30.35 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=23.2
Q ss_pred HHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHH
Q 013241 121 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAK 164 (447)
Q Consensus 121 ~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~ 164 (447)
.++++.+...+.||++|--.. -+.+|+..+.+.+.
T Consensus 124 ~~LL~~~a~~gkPV~lk~G~~---------~s~~e~~~A~e~i~ 158 (266)
T PRK13398 124 FELLKEVGKTKKPILLKRGMS---------ATLEEWLYAAEYIM 158 (266)
T ss_pred HHHHHHHhcCCCcEEEeCCCC---------CCHHHHHHHHHHHH
Confidence 456677777888888885321 25667777766554
No 153
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=43.74 E-value=1.3e+02 Score=29.14 Aligned_cols=87 Identities=18% Similarity=0.298 Sum_probs=52.8
Q ss_pred cHHHHH-HHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH----------HHHHHHhhhhCCcEEEEeCCCCCCcCeE
Q 013241 80 GEIAVR-VIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------EEAVKLADELGFPVMIKATAGGGGRGMR 148 (447)
Q Consensus 80 geia~r-i~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~ 148 (447)
|+-+++ +.+.+++.|++++.-.. |.... .+..+.+.+ .++++.+.+.|.||++|-- +
T Consensus 64 G~~gl~~L~~~~~~~Gl~~~Tev~--d~~~v--~~~~e~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G-------~- 131 (250)
T PRK13397 64 GLQGIRYLHEVCQEFGLLSVSEIM--SERQL--EEAYDYLDVIQVGARNMQNFEFLKTLSHIDKPILFKRG-------L- 131 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeeC--CHHHH--HHHHhcCCEEEECcccccCHHHHHHHHccCCeEEEeCC-------C-
Confidence 444554 45677889999875332 22222 222222333 6778888888999999853 1
Q ss_pred EECCHHHHHHHHHHHHHHHHHhcCCCcE-EEeeccCC
Q 013241 149 LAKEPDEFVKLLQQAKSEAAAAFGNDGV-YLEKYVQN 184 (447)
Q Consensus 149 ~v~~~~el~~~~~~~~~~~~~~~~~~~~-lvEefI~G 184 (447)
.-+.+|+..+++.+... |+.++ ++|+-+.+
T Consensus 132 -~~t~~e~~~A~e~i~~~-----Gn~~i~L~eRg~~~ 162 (250)
T PRK13397 132 -MATIEEYLGALSYLQDT-----GKSNIILCERGVRG 162 (250)
T ss_pred -CCCHHHHHHHHHHHHHc-----CCCeEEEEccccCC
Confidence 14788999888877643 45444 44445544
No 154
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=43.71 E-value=2.7e+02 Score=25.80 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=28.4
Q ss_pred ccccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEE
Q 013241 66 KVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAV 100 (447)
Q Consensus 66 ~~~~~~~kvLianrgeia~ri~r~~~~lGi~~vav 100 (447)
.++..-+|+||.+.|.+|.+-++.+.+.|-.+..+
T Consensus 4 ~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVv 38 (205)
T TIGR01470 4 FANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVI 38 (205)
T ss_pred EEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEE
Confidence 34444579999999999999999999999765433
No 155
>PRK14682 hypothetical protein; Provisional
Probab=43.63 E-value=82 Score=26.62 Aligned_cols=42 Identities=12% Similarity=0.190 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCC-------c--cEeEEEEEEecCCCEEEEEEeccCCC
Q 013241 233 AMGDAAVAAAASIGY-------I--GVGTVEFLLDERGSFYFMEMNTRIQV 274 (447)
Q Consensus 233 ~l~~~a~~i~~alg~-------~--G~~~vEf~~d~~G~~~~iEiNpR~~g 274 (447)
.-++.|.+.++.-|| + ..+.+|++..+++.++|+||-+|-+.
T Consensus 9 ~gE~~A~~~L~~~Gy~Il~rN~r~~~~GEIDiIa~~~~~lvFVEVKtR~~~ 59 (117)
T PRK14682 9 KAELQACKFLHTQALEILAHNFKALPYGEIDIIALDKDTLVFIEVKYRSKT 59 (117)
T ss_pred HHHHHHHHHHHHCCCEEeeeeEECCCCCcEEEEEeeCCEEEEEEEEecCCC
Confidence 345667777777664 3 46789999887778999999999764
No 156
>PRK12497 hypothetical protein; Reviewed
Probab=43.29 E-value=68 Score=27.09 Aligned_cols=42 Identities=24% Similarity=0.319 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHcCC-------c-cEeEEEEEEecCCCEEEEEEeccCCC
Q 013241 233 AMGDAAVAAAASIGY-------I-GVGTVEFLLDERGSFYFMEMNTRIQV 274 (447)
Q Consensus 233 ~l~~~a~~i~~alg~-------~-G~~~vEf~~d~~G~~~~iEiNpR~~g 274 (447)
.-++.|.+.++..|| + ..+.+|++..+++.++|+||-+|-+.
T Consensus 11 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~lvFVEVK~R~~~ 60 (119)
T PRK12497 11 AGEDLAARYLESKGLRILARNFRCRFGEIDLIARDGDTLVFVEVKTRRSD 60 (119)
T ss_pred HHHHHHHHHHHHCCCEEEcceecCCCCcEeeeEEeCCEEEEEEEEeccCC
Confidence 445677777777764 3 46789999877778999999999764
No 157
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=42.90 E-value=49 Score=25.26 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=25.8
Q ss_pred EEEEecCcHHHHHHHHHHHHcCCCeeEEEe
Q 013241 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 73 kvLianrgeia~ri~r~~~~lGi~~vav~~ 102 (447)
|++|.+.|.+++.++..+.++|..+.-+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~ 30 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIER 30 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEES
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEec
Confidence 689999999999999999999987655443
No 158
>PRK14683 hypothetical protein; Provisional
Probab=42.02 E-value=48 Score=28.29 Aligned_cols=39 Identities=13% Similarity=0.219 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCC-------c-cEeEEEEEEecCCCEEEEEEeccC
Q 013241 234 MGDAAVAAAASIGY-------I-GVGTVEFLLDERGSFYFMEMNTRI 272 (447)
Q Consensus 234 l~~~a~~i~~alg~-------~-G~~~vEf~~d~~G~~~~iEiNpR~ 272 (447)
-++.|.+.++.-|| + ..+.+|++..+++.++|+||-+|.
T Consensus 19 gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDIIa~~~~~lVFVEVKtR~ 65 (122)
T PRK14683 19 GEVLIILFLKCKLYHIIKHRYRCPLGEIDIIAHKNKQLVFIEVKTSL 65 (122)
T ss_pred HHHHHHHHHHHCCCEEEeeecCCCCCcEEEEEEeCCEEEEEEEeecC
Confidence 35566666776664 4 578999999877889999999994
No 159
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=41.45 E-value=1.3e+02 Score=29.21 Aligned_cols=83 Identities=27% Similarity=0.324 Sum_probs=48.9
Q ss_pred HHHHH-HHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH-------HHHHHHhhhhCCcEEEEeCCCCCCcCeEEECC
Q 013241 81 EIAVR-VIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI-------EEAVKLADELGFPVMIKATAGGGGRGMRLAKE 152 (447)
Q Consensus 81 eia~r-i~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i-------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~ 152 (447)
+-+++ +.+.|+++|+++.......+...+...+.+ .+.+ -++++.+.+.|.|+++|--. . .+
T Consensus 75 ~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~~d-~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~-------~--~t 144 (260)
T TIGR01361 75 EEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEYAD-ILQIGARNMQNFELLKEVGKQGKPVLLKRGM-------G--NT 144 (260)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhhCC-EEEECcccccCHHHHHHHhcCCCcEEEeCCC-------C--CC
Confidence 34443 456788899998754433322222112211 1111 56778888889999998532 1 36
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEE
Q 013241 153 PDEFVKLLQQAKSEAAAAFGNDGVYL 178 (447)
Q Consensus 153 ~~el~~~~~~~~~~~~~~~~~~~~lv 178 (447)
.+|+..+++.+.+. |+..+++
T Consensus 145 ~~e~~~Ave~i~~~-----Gn~~i~l 165 (260)
T TIGR01361 145 IEEWLYAAEYILSS-----GNGNVIL 165 (260)
T ss_pred HHHHHHHHHHHHHc-----CCCcEEE
Confidence 88999888877543 4555544
No 160
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=41.14 E-value=1.5e+02 Score=29.08 Aligned_cols=82 Identities=21% Similarity=0.371 Sum_probs=51.0
Q ss_pred c-HHHHHHH-HHHHHcCCCeeEEE-eccChhhHHHHHhccccCH----------HHHHHHhhhhCCcEEEEeCCCCCCcC
Q 013241 80 G-EIAVRVI-RTAHEMGIPCVAVY-STIDKDALHVKLADESVCI----------EEAVKLADELGFPVMIKATAGGGGRG 146 (447)
Q Consensus 80 g-eia~ri~-r~~~~lGi~~vav~-~~~dk~~~~~~lad~~v~i----------~e~~~~~~~ig~PvVvKP~~g~Gg~G 146 (447)
| |.++.+. +..++.|++++.=. ...+ ...+.+.+.+ -+++..+.+.+.||.+|- |
T Consensus 71 G~eeGL~iL~~vk~~~GlpvvTeV~~~~~-----~~~~ae~vDilQIgAr~~rntdLL~a~~~t~kpV~lKr-------G 138 (281)
T PRK12457 71 GLDEGLRIFEEVKARFGVPVITDVHEVEQ-----AAPVAEVADVLQVPAFLARQTDLVVAIAKTGKPVNIKK-------P 138 (281)
T ss_pred CHHHHHHHHHHHHHHHCCceEEEeCCHHH-----HHHHhhhCeEEeeCchhhchHHHHHHHhccCCeEEecC-------C
Confidence 5 7788887 55567999987422 2222 2222222222 678888888899999994 4
Q ss_pred eEEECCHHHHHHHHHHHHHHHHHhcCCCcEE-Eee
Q 013241 147 MRLAKEPDEFVKLLQQAKSEAAAAFGNDGVY-LEK 180 (447)
Q Consensus 147 v~~v~~~~el~~~~~~~~~~~~~~~~~~~~l-vEe 180 (447)
.+. +++|+..+.+.+... |+..++ .|+
T Consensus 139 qf~--s~~e~~~aae~i~~~-----Gn~~vilcER 166 (281)
T PRK12457 139 QFM--SPTQMKHVVSKCREA-----GNDRVILCER 166 (281)
T ss_pred CcC--CHHHHHHHHHHHHHc-----CCCeEEEEeC
Confidence 332 467888887777654 455554 444
No 161
>PRK14679 hypothetical protein; Provisional
Probab=40.70 E-value=66 Score=27.70 Aligned_cols=43 Identities=19% Similarity=0.385 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCC-------c-cEeEEEEEEecCCCEEEEEEeccCCCc
Q 013241 233 AMGDAAVAAAASIGY-------I-GVGTVEFLLDERGSFYFMEMNTRIQVE 275 (447)
Q Consensus 233 ~l~~~a~~i~~alg~-------~-G~~~vEf~~d~~G~~~~iEiNpR~~g~ 275 (447)
.-++.|.+.++.-|| + ..+.+|++..+++.++|+||-+|-+..
T Consensus 20 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~lVFVEVKtR~~~~ 70 (128)
T PRK14679 20 SAEGLALLALMLKGYRPLARRFAAAGGEIDLIVRRGRTIAFVEVKARATLD 70 (128)
T ss_pred HHHHHHHHHHHHCCCEEEeeeccCCCCeEEEEEEeCCEEEEEEEEecCCCC
Confidence 345566666666664 4 568899999877889999999997644
No 162
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=39.96 E-value=45 Score=32.42 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=54.6
Q ss_pred CCCceeccCCcceeccccccccCCcccccccccccccCCCCcc-ccCCCCCCccccCCcEEEEecCcHHHHHHHHHHHHc
Q 013241 15 SPGLFVGRGKGILRSSQCSFMVGSRTVNFPRQVVAGVGGKLKR-RCGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEM 93 (447)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~kvLianrgeia~ri~r~~~~l 93 (447)
-|.-|+-.|.| -||.|+---... -++ +|.--.. +-.+|| |.|-..||--|..+|+++
T Consensus 308 ePANFLDvGGg-V~EdqV~~Af~i-----lTa----DPkVk~iLvNiFGG------------IVNCAtIANGiv~A~~kl 365 (412)
T KOG1447|consen 308 EPANFLDVGGG-VKEDQVYQAFKI-----LTA----DPKVKAILVNIFGG------------IVNCATIANGIVKACRKL 365 (412)
T ss_pred CCcceeeccCc-ccHHHHHHHhhh-----hcc----CCceeEEEEehhcc------------eehhHhHhhHHHHHHHhh
Confidence 57777777777 677776442222 122 3311111 022444 566778899999999999
Q ss_pred CCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcE
Q 013241 94 GIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPV 134 (447)
Q Consensus 94 Gi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~Pv 134 (447)
++.++-+......+- +++.+...+.|.|+
T Consensus 366 ~LnVPlVVRLEGTNV------------~~A~~Ilk~SGLpI 394 (412)
T KOG1447|consen 366 ELNVPLVVRLEGTNV------------QEAQKILKKSGLPI 394 (412)
T ss_pred cCCCcEEEEEcCCCH------------HHHHHHHHhcCCce
Confidence 999998876644322 77777777777775
No 163
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=39.71 E-value=51 Score=35.63 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=29.4
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEec
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~ 103 (447)
-++++|.+-|..+..+++.+++.|++++.+...
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d 449 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETS 449 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECC
Confidence 479999999999999999999999998777543
No 164
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=38.93 E-value=1.7e+02 Score=28.40 Aligned_cols=83 Identities=22% Similarity=0.356 Sum_probs=51.0
Q ss_pred c-HHHHHHHHHH-HHcCCCeeEEEeccChhhHHHHHhccccCH----------HHHHHHhhhhCCcEEEEeCCCCCCcCe
Q 013241 80 G-EIAVRVIRTA-HEMGIPCVAVYSTIDKDALHVKLADESVCI----------EEAVKLADELGFPVMIKATAGGGGRGM 147 (447)
Q Consensus 80 g-eia~ri~r~~-~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv 147 (447)
| |.++.+.+.+ ++.|++++.=....+. ...+.+.+.+ -++++.+.+.+.||.+|- |.
T Consensus 57 G~eeGL~iL~~vk~~~glpvvTeV~~~~~----~~~vae~vDilQIgArn~rn~~LL~a~g~t~kpV~lKr-------G~ 125 (258)
T TIGR01362 57 GLEEGLKILQKVKEEFGVPILTDVHESSQ----CEPVAEVVDIIQIPAFLCRQTDLLVAAAKTGRIVNVKK-------GQ 125 (258)
T ss_pred CHHHHHHHHHHHHHHhCCceEEEeCCHHH----HHHHHhhCcEEEeCchhcchHHHHHHHhccCCeEEecC-------CC
Confidence 5 6777776655 5689997752222111 1222222222 678888888899999994 33
Q ss_pred EEECCHHHHHHHHHHHHHHHHHhcCCCcE-EEee
Q 013241 148 RLAKEPDEFVKLLQQAKSEAAAAFGNDGV-YLEK 180 (447)
Q Consensus 148 ~~v~~~~el~~~~~~~~~~~~~~~~~~~~-lvEe 180 (447)
+ -+++|+..+.+.+.+. |+.++ +.|+
T Consensus 126 ~--~t~~e~l~aaeyi~~~-----Gn~~viLcER 152 (258)
T TIGR01362 126 F--LSPWDMKNVVEKVLST-----GNKNILLCER 152 (258)
T ss_pred c--CCHHHHHHHHHHHHHc-----CCCcEEEEeC
Confidence 3 4788888888877654 45555 4454
No 165
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=38.83 E-value=1.7e+02 Score=28.44 Aligned_cols=83 Identities=20% Similarity=0.363 Sum_probs=51.3
Q ss_pred c-HHHHHHHHHH-HHcCCCeeEEEeccChhhHHHHHhccccCH----------HHHHHHhhhhCCcEEEEeCCCCCCcCe
Q 013241 80 G-EIAVRVIRTA-HEMGIPCVAVYSTIDKDALHVKLADESVCI----------EEAVKLADELGFPVMIKATAGGGGRGM 147 (447)
Q Consensus 80 g-eia~ri~r~~-~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv 147 (447)
| |-++++.+.+ ++.|++++.=....+. ...+.+.+.+ -++++.+.+.+-||.+|- |+
T Consensus 65 G~eeGL~~L~~vk~~~GlpvvTeV~~~~~----~~~v~~~~DilQIgArn~rn~~LL~a~g~t~kpV~lKr-------G~ 133 (264)
T PRK05198 65 GLEEGLKILQEVKETFGVPVLTDVHEPEQ----AAPVAEVVDVLQIPAFLCRQTDLLVAAAKTGKVVNIKK-------GQ 133 (264)
T ss_pred ChHHHHHHHHHHHHHHCCceEEEeCCHHH----HHHHHhhCcEEEECchhcchHHHHHHHhccCCeEEecC-------CC
Confidence 5 6777776665 5689997743222111 1122222222 677888888899999994 43
Q ss_pred EEECCHHHHHHHHHHHHHHHHHhcCCCcEE-Eee
Q 013241 148 RLAKEPDEFVKLLQQAKSEAAAAFGNDGVY-LEK 180 (447)
Q Consensus 148 ~~v~~~~el~~~~~~~~~~~~~~~~~~~~l-vEe 180 (447)
+ -+++|+..+.+.+.+. |+..++ .|+
T Consensus 134 ~--~t~~e~~~aaeyi~~~-----Gn~~vilcER 160 (264)
T PRK05198 134 F--LAPWDMKNVVDKVREA-----GNDKIILCER 160 (264)
T ss_pred c--CCHHHHHHHHHHHHHc-----CCCeEEEEeC
Confidence 3 4788988888887664 455554 454
No 166
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=38.80 E-value=70 Score=26.07 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=23.3
Q ss_pred EEEecCcHHHHHHHHHHHHcCCCeeEEEe
Q 013241 74 ILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 74 vLianrgeia~ri~r~~~~lGi~~vav~~ 102 (447)
++|.+-|.++..+++.+++.+.+++.+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~ 29 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDR 29 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 68899999999999999998866666544
No 167
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=38.56 E-value=1.1e+02 Score=30.15 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=48.9
Q ss_pred HHHHHHHHHH-HHcCCCeeEEE-eccChhhHHHHHhccccCH----------HHHHHHhhhhCCcEEEEeCCCCCCcCeE
Q 013241 81 EIAVRVIRTA-HEMGIPCVAVY-STIDKDALHVKLADESVCI----------EEAVKLADELGFPVMIKATAGGGGRGMR 148 (447)
Q Consensus 81 eia~ri~r~~-~~lGi~~vav~-~~~dk~~~~~~lad~~v~i----------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~ 148 (447)
|-++++.+.+ ++.|+|++.=. ...+. ..+.+.+.+ -+++..+.+.|-||.||- |++
T Consensus 73 eeGL~iL~~vk~~~glpvvTeV~~~~q~-----~~vae~~DilQIgAr~~rqtdLL~a~~~tgkpV~lKk-------Gq~ 140 (290)
T PLN03033 73 AEGLKILEKVKVAYDLPIVTDVHESSQC-----EAVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKK-------GQF 140 (290)
T ss_pred HHHHHHHHHHHHHHCCceEEeeCCHHHH-----HHHHhhCcEEeeCcHHHHHHHHHHHHHccCCeEEeCC-------CCC
Confidence 7777776655 44788765322 22211 122221222 677777888899999994 443
Q ss_pred EECCHHHHHHHHHHHHHHHHHhcCCCcEEEee
Q 013241 149 LAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 180 (447)
Q Consensus 149 ~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe 180 (447)
-+++|+..+.+.+... |+..+++-|
T Consensus 141 --~t~~e~~~aaeki~~~-----GN~~viLcE 165 (290)
T PLN03033 141 --CAPSVMRNSAEKVRLA-----GNPNVMVCE 165 (290)
T ss_pred --CCHHHHHHHHHHHHHc-----CCCcEEEEe
Confidence 5788988888877654 566555433
No 168
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=38.44 E-value=2.1e+02 Score=23.14 Aligned_cols=36 Identities=33% Similarity=0.316 Sum_probs=22.3
Q ss_pred HHHHHHhhhhCCcEEE-EeCCCCCCcCeEEECCHHHHHHHHHHHHHH
Q 013241 121 EEAVKLADELGFPVMI-KATAGGGGRGMRLAKEPDEFVKLLQQAKSE 166 (447)
Q Consensus 121 ~e~~~~~~~ig~PvVv-KP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~ 166 (447)
.+....+-+.|.++++ ||.. .+.+|+.+.++.+.+.
T Consensus 76 ~~~~~~~l~~g~~v~~EKP~~----------~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 76 AEIAKKALEAGKHVLVEKPLA----------LTLEEAEELVEAAKEK 112 (120)
T ss_dssp HHHHHHHHHTTSEEEEESSSS----------SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEEcCCc----------CCHHHHHHHHHHHHHh
Confidence 3333444455777665 7743 5788888887766554
No 169
>PRK14678 hypothetical protein; Provisional
Probab=37.11 E-value=64 Score=27.42 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHcCC-------c-cEeEEEEEEecCCCEEEEEEeccCCCc
Q 013241 232 KAMGDAAVAAAASIGY-------I-GVGTVEFLLDERGSFYFMEMNTRIQVE 275 (447)
Q Consensus 232 ~~l~~~a~~i~~alg~-------~-G~~~vEf~~d~~G~~~~iEiNpR~~g~ 275 (447)
..-++.|.+.++.-|| + ..+.+|++..+++.++|+||-+|-+..
T Consensus 10 ~~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~lvFVEVKtR~~~~ 61 (120)
T PRK14678 10 DWGEQVAAAYLERCGYTIIARNWRCRAGEIDIVAREGDQLVFVEVRTRRDQD 61 (120)
T ss_pred HHHHHHHHHHHHHCCCEEeeeeecCCCCCEeeeEEeCCEEEEEEEEECCCCC
Confidence 3445677777777664 4 577899998877789999999997644
No 170
>TIGR03586 PseI pseudaminic acid synthase.
Probab=37.02 E-value=1.5e+02 Score=29.83 Aligned_cols=86 Identities=17% Similarity=0.277 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH----------HHHHHHhhhhCCcEEEEeCCCCCCcCeEEE
Q 013241 81 EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------EEAVKLADELGFPVMIKATAGGGGRGMRLA 150 (447)
Q Consensus 81 eia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v 150 (447)
|.=..+.+.|++.|++....-. |..+. ..+.+.++.. -++++.+.+.|-|+++|- |+
T Consensus 77 e~~~~L~~~~~~~Gi~~~stpf--d~~sv-d~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilst-------G~--- 143 (327)
T TIGR03586 77 EWHKELFERAKELGLTIFSSPF--DETAV-DFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMST-------GI--- 143 (327)
T ss_pred HHHHHHHHHHHHhCCcEEEccC--CHHHH-HHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEEC-------CC---
Confidence 4456788999999998765433 22222 1223333333 567777778899999974 44
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCC
Q 013241 151 KEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN 184 (447)
Q Consensus 151 ~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G 184 (447)
.+.+|+..+++.+.+. |+..+.+-+.+.+
T Consensus 144 ~t~~Ei~~Av~~i~~~-----g~~~i~LlhC~s~ 172 (327)
T TIGR03586 144 ATLEEIQEAVEACREA-----GCKDLVLLKCTSS 172 (327)
T ss_pred CCHHHHHHHHHHHHHC-----CCCcEEEEecCCC
Confidence 3789999888877543 3445555554433
No 171
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=35.74 E-value=51 Score=26.49 Aligned_cols=26 Identities=38% Similarity=0.749 Sum_probs=23.3
Q ss_pred cEEEEecCcHHHHHHHHHHHHcCCCe
Q 013241 72 EKILVANRGEIAVRVIRTAHEMGIPC 97 (447)
Q Consensus 72 ~kvLianrgeia~ri~r~~~~lGi~~ 97 (447)
.||+--+-|++|-+|++.++++|+|.
T Consensus 23 P~vvA~G~G~iAe~II~~Ake~~Vpi 48 (92)
T COG2257 23 PKVVASGKGEIAEKIIEKAKEHGVPI 48 (92)
T ss_pred CEEEeecchHHHHHHHHHHHHcCCCc
Confidence 57777789999999999999999984
No 172
>KOG2983 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.73 E-value=4.3e+02 Score=25.83 Aligned_cols=141 Identities=13% Similarity=0.128 Sum_probs=75.3
Q ss_pred HHHHHHhhhhCCcEEEEeCCCCC-------CcCeEEECCHHHHHHHHHH---HHHHHHHhcCC-----------CcEEEe
Q 013241 121 EEAVKLADELGFPVMIKATAGGG-------GRGMRLAKEPDEFVKLLQQ---AKSEAAAAFGN-----------DGVYLE 179 (447)
Q Consensus 121 ~e~~~~~~~ig~PvVvKP~~g~G-------g~Gv~~v~~~~el~~~~~~---~~~~~~~~~~~-----------~~~lvE 179 (447)
..+.+.++++|.-|+-|-.++.- -.+--+|....|+.-.+.. +......+|.+ -.+++-
T Consensus 89 qki~eaineLGgaV~PKLNWSaPrDA~WI~pn~slkCt~~nei~LLfksSdfithDl~~af~~C~D~ds~~~~sfeLvLr 168 (334)
T KOG2983|consen 89 QKIREAINELGGAVIPKLNWSAPRDAAWISPNQSLKCTTFNEIALLFKSSDFITHDLFNAFDSCSDKDSSDPESFELVLR 168 (334)
T ss_pred HHHHHHHHHccceecccccCCCCCcceeeccCCCcccccHHHHHHHHhcchHHHHHHhhhhcccccCCCCCcceehhhHh
Confidence 44556677888888888776653 2233457777776554432 11222222320 134455
Q ss_pred eccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCHHHHHHHHHHHHHHHHHc---CCc-cEeEEEE
Q 013241 180 KYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASI---GYI-GVGTVEF 255 (447)
Q Consensus 180 efI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~al---g~~-G~~~vEf 255 (447)
+|.+=..+.++.++.. ..+++.+..|+.+-...+ + .+..+.+......+++.. .+. --+.+|+
T Consensus 169 kWc~l~p~~EFRcFVK-sn~lvg~~QRd~tnyYd~-----------l-~e~kd~~k~lI~eff~d~i~~kF~dedfvfDV 235 (334)
T KOG2983|consen 169 KWCPLKPEMEFRCFVK-SNELVGICQRDVTNYYDV-----------L-LEEKDLLKGLIEEFFKDKILFKFPDEDFVFDV 235 (334)
T ss_pred hhcCCCcCceEEEEEe-ccceeeeeeccchhHHHH-----------H-HHHHHHHHHHHHHHHHhhhhccCCCCCeeEEE
Confidence 5555433344444443 337788877664211110 1 223334444445554431 222 3467888
Q ss_pred EEecCCCEEEEEEeccCCC
Q 013241 256 LLDERGSFYFMEMNTRIQV 274 (447)
Q Consensus 256 ~~d~~G~~~~iEiNpR~~g 274 (447)
.+++.+++++|++||=-+.
T Consensus 236 Yi~k~~kv~lID~Npf~~~ 254 (334)
T KOG2983|consen 236 YITKERKVWLIDFNPFCGS 254 (334)
T ss_pred EecCCCcEEEEeccCccCc
Confidence 8887789999999995443
No 173
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=35.21 E-value=64 Score=35.46 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=29.6
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEecc
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~ 104 (447)
-++|+|++-|..+..+++.+++.|++++.+....
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~ 433 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDP 433 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCH
Confidence 4799999999999999999999999987775433
No 174
>PRK14685 hypothetical protein; Provisional
Probab=35.00 E-value=1.2e+02 Score=27.76 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHcCC-------c-cEeEEEEEEecCCCEEEEEEeccCCCc
Q 013241 230 LRKAMGDAAVAAAASIGY-------I-GVGTVEFLLDERGSFYFMEMNTRIQVE 275 (447)
Q Consensus 230 ~~~~l~~~a~~i~~alg~-------~-G~~~vEf~~d~~G~~~~iEiNpR~~g~ 275 (447)
.=..-++.|...++.-|| + ..+.||++..+++.++|+||-+|-+..
T Consensus 44 ~G~~gE~~Aa~yL~~~Gy~IL~RN~R~~~GEIDIIA~dg~~LVFVEVKtR~~~~ 97 (177)
T PRK14685 44 CGQAYESAALRWLARQGLRPLARNLRCRAGEIDLAMRDGEVLVLVEVRARAHAG 97 (177)
T ss_pred HhHHHHHHHHHHHHHCCCEEeEeeecCCCCcEEEEEecCCEEEEEEEeECCCCC
Confidence 334556677777777764 3 567899998877789999999996543
No 175
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=34.98 E-value=92 Score=30.73 Aligned_cols=59 Identities=19% Similarity=0.347 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCc-c-EeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCC
Q 013241 227 TPELRKAMGDAAVAAAASIGYI-G-VGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVD 286 (447)
Q Consensus 227 ~~~~~~~l~~~a~~i~~alg~~-G-~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiD 286 (447)
.+++.+.|.+....+. ..|+. | +...-+++++||.+|+|+.-.=.+.+||-.+...--|
T Consensus 204 ~~~il~~il~~~~~~~-~~GiVHGDlSefNIlV~~dg~~~vIDwPQ~v~~~hp~a~e~l~RD 264 (304)
T COG0478 204 PDEILDKILEEVRKAY-RRGIVHGDLSEFNILVTEDGDIVVIDWPQAVPISHPDAEELLERD 264 (304)
T ss_pred HHHHHHHHHHHHHHHH-HcCccccCCchheEEEecCCCEEEEeCcccccCCCCCHHHHHHhH
Confidence 3556666666666666 66665 3 4445568999989999998655555677655544444
No 176
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=34.96 E-value=75 Score=28.61 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=23.3
Q ss_pred CcEEEEecCcHH-HHHHHHHHHHcCCC
Q 013241 71 QEKILVANRGEI-AVRVIRTAHEMGIP 96 (447)
Q Consensus 71 ~~kvLianrgei-a~ri~r~~~~lGi~ 96 (447)
-+++||.+.|++ +..+++.+.+.|..
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~ 70 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNAT 70 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCE
Confidence 489999999996 77799999999985
No 177
>PRK14675 hypothetical protein; Provisional
Probab=34.30 E-value=1.2e+02 Score=25.90 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHcCCc--------cEeEEEEEEecCCCEEEEEEeccCCCc
Q 013241 233 AMGDAAVAAAASIGYI--------GVGTVEFLLDERGSFYFMEMNTRIQVE 275 (447)
Q Consensus 233 ~l~~~a~~i~~alg~~--------G~~~vEf~~d~~G~~~~iEiNpR~~g~ 275 (447)
.-++.|.+.++.-||. ..+.+|++..+++.++|+||-+|-+..
T Consensus 13 ~gE~~A~~~L~~~G~~il~rn~r~~~GEIDlIa~d~~~lvFVEVK~R~~~~ 63 (125)
T PRK14675 13 IGESIAVTYLKGLRYKIVERNFRCRCGEIDIIARDGKTLVFVEVKTRKNYA 63 (125)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCCeEEEEEEeCCEEEEEEEEeccCCC
Confidence 3456677777777653 567899988776789999999997653
No 178
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=34.18 E-value=2.4e+02 Score=28.56 Aligned_cols=46 Identities=20% Similarity=0.287 Sum_probs=31.0
Q ss_pred HHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCc-EEEee
Q 013241 121 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG-VYLEK 180 (447)
Q Consensus 121 ~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~-~lvEe 180 (447)
-++++.+.+.+.|+++|--.. .+.+|+..+.+.+... |+.. +++|+
T Consensus 190 ~~LL~~va~~~kPViLk~G~~---------~ti~E~l~A~e~i~~~-----GN~~viL~er 236 (335)
T PRK08673 190 FDLLKEVGKTNKPVLLKRGMS---------ATIEEWLMAAEYILAE-----GNPNVILCER 236 (335)
T ss_pred HHHHHHHHcCCCcEEEeCCCC---------CCHHHHHHHHHHHHHc-----CCCeEEEEEC
Confidence 677777888899999985321 3577888888776543 4544 45554
No 179
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=34.08 E-value=70 Score=35.00 Aligned_cols=33 Identities=6% Similarity=0.098 Sum_probs=29.2
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEec
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~ 103 (447)
-.+++|++-|..+..+++.+++.|++++.+...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d 432 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERD 432 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECC
Confidence 368999999999999999999999998877643
No 180
>PRK14676 hypothetical protein; Provisional
Probab=34.05 E-value=1e+02 Score=26.06 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCC-------c-cEeEEEEEEecCCCEEEEEEeccCCCc
Q 013241 233 AMGDAAVAAAASIGY-------I-GVGTVEFLLDERGSFYFMEMNTRIQVE 275 (447)
Q Consensus 233 ~l~~~a~~i~~alg~-------~-G~~~vEf~~d~~G~~~~iEiNpR~~g~ 275 (447)
.-++.|.+.++.-|| + ..+.+|++..+++.++|+||-+|-+-+
T Consensus 12 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~lVFVEVKt~~~~g 62 (117)
T PRK14676 12 TAEEAVARIYDRSGRPVAARRWRGVSGEIDLIAREGAEVIFIEVKKSKSHA 62 (117)
T ss_pred HHHHHHHHHHHHCCCEEeeeecCCCCCeEEEEEeeCCEEEEEEEeeCCCCC
Confidence 345667777777764 4 568999998877789999999865433
No 181
>PRK14681 hypothetical protein; Provisional
Probab=33.42 E-value=1.2e+02 Score=27.11 Aligned_cols=43 Identities=19% Similarity=0.208 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCC-------c-cEeEEEEEEec-CCCEEEEEEeccCCCc
Q 013241 233 AMGDAAVAAAASIGY-------I-GVGTVEFLLDE-RGSFYFMEMNTRIQVE 275 (447)
Q Consensus 233 ~l~~~a~~i~~alg~-------~-G~~~vEf~~d~-~G~~~~iEiNpR~~g~ 275 (447)
.-++.|.+.++.-|| + ..+.+|++..+ ++.++|+||-+|-+..
T Consensus 48 ~gE~~Aa~~L~~~Gy~IL~rN~R~~~GEIDIIa~d~~~~LVFVEVKtR~~~~ 99 (158)
T PRK14681 48 LGEQYAAAWLEEHGWTTLSRNWHCRYGELDIVALNPEYTIVFVEVKTRRSMH 99 (158)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEcCCceEEEEEEEeccCCC
Confidence 445667777777765 3 56789999875 3589999999997654
No 182
>PF02021 UPF0102: Uncharacterised protein family UPF0102; InterPro: IPR003509 The proteins in this entry are functionally uncharacterised.; PDB: 3FOV_A.
Probab=33.29 E-value=96 Score=24.95 Aligned_cols=41 Identities=20% Similarity=0.360 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCc--------cEeEEEEEEecCCCEEEEEEeccCCCc
Q 013241 235 GDAAVAAAASIGYI--------GVGTVEFLLDERGSFYFMEMNTRIQVE 275 (447)
Q Consensus 235 ~~~a~~i~~alg~~--------G~~~vEf~~d~~G~~~~iEiNpR~~g~ 275 (447)
++.|.+.++..||. +.+.+|++..+++..+|+||-+|-+..
T Consensus 3 E~~A~~~L~~~G~~IL~rN~r~~~GEIDiIa~~~~~lvfVEVK~R~~~~ 51 (93)
T PF02021_consen 3 EELAARYLERKGYRILERNWRCRRGEIDIIARDGDTLVFVEVKTRSSSS 51 (93)
T ss_dssp HHHHHHHHHHTT-EEEEEEEEETTEEEEEEEEETTEEEEEEEEE-----
T ss_pred HHHHHHHHHHCCCEEeeeeecCCCCcEeEEEEEcccEEEEEEEEeeccc
Confidence 46777788887753 567899999887789999999997653
No 183
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=33.21 E-value=1.7e+02 Score=27.46 Aligned_cols=36 Identities=28% Similarity=0.376 Sum_probs=29.6
Q ss_pred CccccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEE
Q 013241 65 LKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAV 100 (447)
Q Consensus 65 ~~~~~~~~kvLianrgeia~ri~r~~~~lGi~~vav 100 (447)
+.++..-++|||.++|+.|.|=++.+-+.|-.+..+
T Consensus 6 l~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vv 41 (210)
T COG1648 6 LFLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVV 41 (210)
T ss_pred eEEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEE
Confidence 455555689999999999999999999999765444
No 184
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=32.99 E-value=93 Score=26.78 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=20.5
Q ss_pred HHHHHHhhhhCCcEEEEeCCCCC-CcCeEEEC
Q 013241 121 EEAVKLADELGFPVMIKATAGGG-GRGMRLAK 151 (447)
Q Consensus 121 ~e~~~~~~~ig~PvVvKP~~g~G-g~Gv~~v~ 151 (447)
..+.+.+++++-++++||..|-. ..+++++.
T Consensus 85 ~~il~lA~~v~adlii~pL~~e~~~~~~klin 116 (127)
T PF03686_consen 85 PPILELAKKVGADLIIRPLGGESPPVEMKLIN 116 (127)
T ss_dssp HHHHHHHHHHT-EEEEE-BTTB---TT-EEEE
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCceEEEe
Confidence 67788899999999999987754 55555543
No 185
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=32.82 E-value=1.1e+02 Score=31.98 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=27.7
Q ss_pred cCCcEEEEecCcHHHHHHHHHHHHcCCCeeEE
Q 013241 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAV 100 (447)
Q Consensus 69 ~~~~kvLianrgeia~ri~r~~~~lGi~~vav 100 (447)
..=++|+|.+-|.++..+++.++.+|..++.+
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~ 231 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVT 231 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 44589999999999999999999999975553
No 186
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=32.52 E-value=2.8e+02 Score=28.28 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=26.5
Q ss_pred HHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHH
Q 013241 121 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSE 166 (447)
Q Consensus 121 ~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~ 166 (447)
-++++.+.+.+.|+++|- |+. .+.+|+..+.+.+...
T Consensus 198 ~~LL~~va~t~kPVllk~-------G~~--~t~ee~~~A~e~i~~~ 234 (352)
T PRK13396 198 FSLLKKVGAQDKPVLLKR-------GMA--ATIDEWLMAAEYILAA 234 (352)
T ss_pred HHHHHHHHccCCeEEEeC-------CCC--CCHHHHHHHHHHHHHc
Confidence 566667777788999984 332 4788998888877643
No 187
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.38 E-value=3e+02 Score=27.77 Aligned_cols=50 Identities=26% Similarity=0.329 Sum_probs=39.2
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEE
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMI 136 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVv 136 (447)
-.||||.+.|-|++-....++.+|..-+.+.... +.-++.++++|+-++.
T Consensus 170 Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~----------------~~Rle~Ak~~Ga~~~~ 219 (354)
T KOG0024|consen 170 GSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLV----------------ANRLELAKKFGATVTD 219 (354)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecC----------------HHHHHHHHHhCCeEEe
Confidence 3699999999999999999999998766554433 3346777788886665
No 188
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=31.56 E-value=79 Score=32.71 Aligned_cols=44 Identities=7% Similarity=0.142 Sum_probs=33.0
Q ss_pred cEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCC
Q 013241 133 PVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN 184 (447)
Q Consensus 133 PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G 184 (447)
..|.||..|.-|.+|.++++...+. .....|++.+++.|+|++=
T Consensus 309 ~yV~KPi~gREG~nV~i~~~g~~~~--------~~~g~y~~~~~IyQ~~~~L 352 (397)
T PHA02117 309 KYVSKPLLSREGNNIHIFEYGGESE--------DTDGNYAEEPRVVQQLIEW 352 (397)
T ss_pred CEEeccCCCcCCCCEEEEECCeEEe--------ccCCCCCCCCeEEEEccCC
Confidence 3899999999999999997643322 1112366789999999884
No 189
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=31.20 E-value=92 Score=30.59 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=25.0
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCee
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCV 98 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~v 98 (447)
-++++|.+-|.++..+++.++.+|..+.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~ 178 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVF 178 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEE
Confidence 4799999999999999999999998543
No 190
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=31.03 E-value=3.9e+02 Score=23.90 Aligned_cols=93 Identities=18% Similarity=0.234 Sum_probs=52.6
Q ss_pred cEEEEecCcHHHHHH--HHHHHHcCCCeeEEEeccChhhHHHHHhcccc----CH----HHHHHHhhhhCCcEEEEeCCC
Q 013241 72 EKILVANRGEIAVRV--IRTAHEMGIPCVAVYSTIDKDALHVKLADESV----CI----EEAVKLADELGFPVMIKATAG 141 (447)
Q Consensus 72 ~kvLianrgeia~ri--~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v----~i----~e~~~~~~~ig~PvVvKP~~g 141 (447)
+-|.|.+.|...... +.++.+++++.+.+...++...+-....+... .. -+..+.+ .+
T Consensus 68 ~vv~i~GDG~f~m~~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a------------~a 135 (177)
T cd02010 68 KVVAVSGDGGFMMNSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRDSGVDFGNPDFVKYA------------ES 135 (177)
T ss_pred cEEEEEcchHHHhHHHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCcccCcCCCCCHHHHH------------HH
Confidence 456677777554433 66688899998877766665443221111000 00 0111222 22
Q ss_pred CCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccC
Q 013241 142 GGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ 183 (447)
Q Consensus 142 ~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~ 183 (447)
.|.++ ..+++.+|+.++++++... +.+.+||=.++
T Consensus 136 ~G~~~-~~v~~~~el~~al~~a~~~------~~p~liev~~~ 170 (177)
T cd02010 136 FGAKG-YRIESADDLLPVLERALAA------DGVHVIDCPVD 170 (177)
T ss_pred CCCEE-EEECCHHHHHHHHHHHHhC------CCCEEEEEEec
Confidence 33444 4778999999999887642 46777775554
No 191
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=30.88 E-value=99 Score=24.21 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEE
Q 013241 81 EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMI 136 (447)
Q Consensus 81 eia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVv 136 (447)
+.|..+.+.++..|+.+..-.....- ..-...+...|+|+++
T Consensus 16 ~~a~~l~~~L~~~gi~v~~d~~~~~~--------------~k~~~~a~~~g~p~~i 57 (94)
T PF03129_consen 16 EYAQELANKLRKAGIRVELDDSDKSL--------------GKQIKYADKLGIPFII 57 (94)
T ss_dssp HHHHHHHHHHHHTTSEEEEESSSSTH--------------HHHHHHHHHTTESEEE
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCch--------------hHHHHHHhhcCCeEEE
Confidence 57889999999999875544322222 3445556667777654
No 192
>KOG2364 consensus Predicted pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
Probab=30.71 E-value=1.8e+02 Score=29.61 Aligned_cols=74 Identities=16% Similarity=0.181 Sum_probs=40.8
Q ss_pred CcEEEEeeeeeccccccc--eeeEecCCCCCCHHHHHHHHHHHHHHHHHcCC--c--cEeEEEEEEecCCCEEEEEE-ec
Q 013241 198 GNVVHFGERDCSIQRRNQ--KLLEEAPSPALTPELRKAMGDAAVAAAASIGY--I--GVGTVEFLLDERGSFYFMEM-NT 270 (447)
Q Consensus 198 g~vv~l~~r~~s~~~~~~--k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~--~--G~~~vEf~~d~~G~~~~iEi-Np 270 (447)
+..+.+..|.|.+.|.-. .++..+|-. ......+.+.+.....+.+=.. . |--.||.+.-.+|+++++|+ ||
T Consensus 203 ~~~vyiAGRY~KySR~LpqTPWi~dg~Rl-~enSveE~i~dhl~~~F~a~d~~F~sSGREDvDVRmLG~GRPFvlEl~N~ 281 (433)
T KOG2364|consen 203 NSPVYIAGRYIKYSRNLPQTPWIVDGPRL-KENSVEEDIKDHLKEFFSADDVVFISSGREDVDVRMLGTGRPFVLELKNP 281 (433)
T ss_pred CCcEEEeeehhhhhccCCCCCcccCCccc-ccccHHHHHHHHHHhhcCccceeeccCCCcceeeEeccCCCceEEEcCCc
Confidence 345666666666655521 122223221 2334444555555554443322 2 44467777778899999996 77
Q ss_pred cC
Q 013241 271 RI 272 (447)
Q Consensus 271 R~ 272 (447)
|-
T Consensus 282 rr 283 (433)
T KOG2364|consen 282 RR 283 (433)
T ss_pred cc
Confidence 74
No 193
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=30.34 E-value=1.2e+02 Score=29.53 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=28.3
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEe
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~ 102 (447)
-+++||++.|..|..++..+.++|+..+.++.
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~n 156 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGVTDITVIN 156 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEe
Confidence 36899999999999999999999998777664
No 194
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=30.24 E-value=1.3e+02 Score=23.11 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEE
Q 013241 81 EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMI 136 (447)
Q Consensus 81 eia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVv 136 (447)
+.|..++..++..|+.+..-...... ..-.+.+...|+|+++
T Consensus 15 ~~a~~~~~~Lr~~g~~v~~d~~~~~~--------------~~~~~~a~~~g~~~~i 56 (91)
T cd00860 15 DYAKEVAKKLSDAGIRVEVDLRNEKL--------------GKKIREAQLQKIPYIL 56 (91)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCH--------------HHHHHHHHHcCCCEEE
Confidence 47889999999999976553333222 4445566788888544
No 195
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=30.21 E-value=1.8e+02 Score=30.06 Aligned_cols=48 Identities=15% Similarity=0.208 Sum_probs=37.1
Q ss_pred EEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH
Q 013241 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI 120 (447)
Q Consensus 73 kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i 120 (447)
-|+-+..|..|..++=+++++|+|+..+.-...+....++..+.+-.+
T Consensus 116 gViasSaGNha~a~Ayaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~V 163 (457)
T KOG1250|consen 116 GVIASSAGNHAQAAAYAARKLGIPATIVMPVATPLMKIQRCRNLGATV 163 (457)
T ss_pred ceEEecCccHHHHHHHHHHhcCCceEEEecCCChHHHHHHHhccCCEE
Confidence 456666899999999999999999888777766766666666665443
No 196
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=29.94 E-value=2.3e+02 Score=28.94 Aligned_cols=71 Identities=20% Similarity=0.264 Sum_probs=42.8
Q ss_pred HHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH-------HHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHH
Q 013241 85 RVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI-------EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFV 157 (447)
Q Consensus 85 ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i-------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~ 157 (447)
.+.+.|++.|+++...........+...+.| .+.+ -++++.+.+.|-||++|-- +. .+.+|+.
T Consensus 173 ~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~vd-~lkI~s~~~~n~~LL~~~a~~gkPVilk~G-------~~--~t~~e~~ 242 (360)
T PRK12595 173 ILKQVADEYGLAVISEIVNPADVEVALDYVD-VIQIGARNMQNFELLKAAGRVNKPVLLKRG-------LS--ATIEEFI 242 (360)
T ss_pred HHHHHHHHcCCCEEEeeCCHHHHHHHHHhCC-eEEECcccccCHHHHHHHHccCCcEEEeCC-------CC--CCHHHHH
Confidence 5567788899987654332222111111111 1111 6777788888999999853 21 4788999
Q ss_pred HHHHHHHH
Q 013241 158 KLLQQAKS 165 (447)
Q Consensus 158 ~~~~~~~~ 165 (447)
.+++.+..
T Consensus 243 ~Ave~i~~ 250 (360)
T PRK12595 243 YAAEYIMS 250 (360)
T ss_pred HHHHHHHH
Confidence 88887754
No 197
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=29.82 E-value=2.2e+02 Score=28.19 Aligned_cols=59 Identities=29% Similarity=0.349 Sum_probs=40.9
Q ss_pred EEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEE
Q 013241 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVM 135 (447)
Q Consensus 73 kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvV 135 (447)
||++.+.++.+.++.+.+.+.|+..+.|.+..|+..-. ...+....+.+.+++.+.|++
T Consensus 2 kIvf~G~~~~a~~~L~~L~~~~~~i~~Vvt~~~~~~~r----~~~~~~~~v~~~a~~~~Ip~~ 60 (309)
T PRK00005 2 RIVFMGTPEFAVPSLKALLESGHEVVAVVTQPDRPAGR----GKKLTPSPVKQLALEHGIPVL 60 (309)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCCC----CCCCCCCHHHHHHHHcCCCEE
Confidence 78999999999999999998899988888766542110 000111355667777777763
No 198
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=29.80 E-value=1e+02 Score=30.40 Aligned_cols=29 Identities=21% Similarity=0.349 Sum_probs=25.3
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeE
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVA 99 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~va 99 (447)
-+|++|.+.|.++..+++.++.+|..+..
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v 180 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTV 180 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEE
Confidence 47999999999999999999999974333
No 199
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=28.88 E-value=57 Score=34.13 Aligned_cols=78 Identities=19% Similarity=0.221 Sum_probs=53.7
Q ss_pred CcceeccccccccCCcccccccccccccCCCCccccCCCCCCccccC-----CcEEEEec----CcHHHHHHHHHHHHcC
Q 013241 24 KGILRSSQCSFMVGSRTVNFPRQVVAGVGGKLKRRCGGGGALKVTCR-----QEKILVAN----RGEIAVRVIRTAHEMG 94 (447)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~kvLian----rgeia~ri~r~~~~lG 94 (447)
-|.+++|++|...|..+=.|.|++ ..+|.-..+..+. ..-+|.. -|||++.+ ||....+|++.+++.|
T Consensus 299 ig~A~~sGiPy~~GliKNrYvgRT-FI~P~q~~R~~~V--r~KLnpvr~~v~GKrVvlVDDSIVRGTTsr~IV~mlReAG 375 (470)
T COG0034 299 IGYARASGIPYEEGLIKNRYVGRT-FIMPTQELREKGV--RLKLNPVREVVKGKRVVLVDDSIVRGTTSRRIVQMLREAG 375 (470)
T ss_pred HHHHHHhCCchhhcccccccccee-eeCCcHHHHHhhh--hhhcCchHHHhCCCeEEEEccccccCccHHHHHHHHHHhC
Confidence 456899999999999888899983 3333221111111 3333322 37888877 8999999999999999
Q ss_pred CCeeEEEecc
Q 013241 95 IPCVAVYSTI 104 (447)
Q Consensus 95 i~~vav~~~~ 104 (447)
-+-+-+.+..
T Consensus 376 AkEVHvrias 385 (470)
T COG0034 376 AKEVHVRIAS 385 (470)
T ss_pred CCEEEEEecC
Confidence 8876655543
No 200
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=28.86 E-value=1.1e+02 Score=22.52 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=23.0
Q ss_pred HHHcCCccEeEEEEEEecCCCEEEEEEe
Q 013241 242 AASIGYIGVGTVEFLLDERGSFYFMEMN 269 (447)
Q Consensus 242 ~~alg~~G~~~vEf~~d~~G~~~~iEiN 269 (447)
++..++.|-..++|.++++|++.=+++.
T Consensus 3 a~~~~~~G~v~v~~~i~~~G~v~~~~i~ 30 (74)
T TIGR01352 3 ARRRGIEGTVVVRFTVDADGRVTSVSVL 30 (74)
T ss_pred HHHcCCceEEEEEEEECCCCCEEEEEEE
Confidence 4567888999999999999988766653
No 201
>COG1598 Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=28.15 E-value=46 Score=25.47 Aligned_cols=22 Identities=23% Similarity=0.135 Sum_probs=19.2
Q ss_pred EEEEEcCCHHHHHHHHHHhhhc
Q 013241 367 KLIVWAPTREKAIERMKRALND 388 (447)
Q Consensus 367 ~vi~~g~~~~eA~~~~~~al~~ 388 (447)
-+...|+|++||++++..|++.
T Consensus 25 gc~s~G~T~eea~~n~~eai~l 46 (73)
T COG1598 25 GCHSQGETLEEALQNAKEAIEL 46 (73)
T ss_pred CccccCCCHHHHHHHHHHHHHH
Confidence 3667999999999999999863
No 202
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=28.11 E-value=98 Score=31.31 Aligned_cols=50 Identities=24% Similarity=0.305 Sum_probs=40.1
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHH-hccccC
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVC 119 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~l-ad~~v~ 119 (447)
+=++|+|.+-|=.+.-.++.++.+|.+++++....+|.....++ ||+.+.
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~ 216 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVIN 216 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEE
Confidence 35799999988888888899999999999999988886666666 444443
No 203
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=28.02 E-value=2.2e+02 Score=25.08 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=24.8
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEE
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~ 101 (447)
|+||-+.+=|.++..+++.+.+.|.++..+.
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEE
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeec
Confidence 5789999999999999999999999866543
No 204
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=26.94 E-value=87 Score=23.52 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=21.4
Q ss_pred HHHcCCccEeEEEEEEecCCCEEEEEE
Q 013241 242 AASIGYIGVGTVEFLLDERGSFYFMEM 268 (447)
Q Consensus 242 ~~alg~~G~~~vEf~~d~~G~~~~iEi 268 (447)
+...+..|...++|.+|.+|++.-+++
T Consensus 9 a~~~~~~G~v~v~~~I~~~G~v~~~~v 35 (79)
T PF03544_consen 9 ARRRGIEGTVVVEFTIDPDGRVSDVRV 35 (79)
T ss_dssp HHHHTEEEEEEEEEEEETTTEEEEEEE
T ss_pred HHHCCCeEEEEEEEEEeCCCCEEEEEE
Confidence 345677899999999999997765554
No 205
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=26.76 E-value=2.8e+02 Score=21.57 Aligned_cols=33 Identities=15% Similarity=0.034 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEe
Q 013241 226 LTPELRKAMGDAAVAAAASIGYIGVGTVEFLLD 258 (447)
Q Consensus 226 l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d 258 (447)
.+++.++++.+-...+++.+||.+...+++.+-
T Consensus 15 ~Dp~Fr~~Ll~DPraaL~e~G~~~P~~~~i~Vv 47 (77)
T TIGR03793 15 EDEAFKQALLTNPKEALEREGVQVPAEVEVKVV 47 (77)
T ss_pred cCHHHHHHHHHCHHHHHHHhCCCCCCceEEEEE
Confidence 577888899999999999999998888887764
No 206
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=26.71 E-value=2.7e+02 Score=27.60 Aligned_cols=59 Identities=24% Similarity=0.280 Sum_probs=42.3
Q ss_pred EEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEE
Q 013241 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVM 135 (447)
Q Consensus 73 kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvV 135 (447)
||++.+.++.|+.+.+++.+.|+..+.|.+..|+..-.. ..+....+.+++.+.+.|++
T Consensus 2 kIvf~Gs~~~a~~~L~~L~~~~~~i~~Vvt~pd~~~~r~----~~~~~~~v~~~A~~~~Ipv~ 60 (313)
T TIGR00460 2 RIVFFGTPTFSLPVLEELREDNFEVVGVVTQPDKPAGRG----KKLTPPPVKVLAEEKGIPVF 60 (313)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCCCccCCC----CCCCCChHHHHHHHcCCCEE
Confidence 789999999999999999999999998888776522100 00111456677777788864
No 207
>PRK10676 DNA-binding transcriptional regulator ModE; Provisional
Probab=26.55 E-value=1.1e+02 Score=29.61 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=30.5
Q ss_pred HHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHH
Q 013241 125 KLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAK 164 (447)
Q Consensus 125 ~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~ 164 (447)
+.-+.+|+|++.+-..|.+|+|+.+-..-+++...+....
T Consensus 54 ~le~~lg~~L~~r~~gg~~g~~~~lT~~G~~l~~~~~~~~ 93 (263)
T PRK10676 54 EMNQLSEHILVERATGGKGGGGAVLTRYGERLIQLYDLLA 93 (263)
T ss_pred HHHHHhCCCeEEEecCCCCCCCcEECHHHHHHHHHHHHHH
Confidence 3335689999999999999999988777777776665543
No 208
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=26.37 E-value=50 Score=26.88 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=26.6
Q ss_pred cccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEec
Q 013241 67 VTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (447)
Q Consensus 67 ~~~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~ 103 (447)
++..-+++||.+.|+.|.+-++.+.+.|-. +.+++.
T Consensus 3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~-v~vis~ 38 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPVAARKARLLLEAGAK-VTVISP 38 (103)
T ss_dssp E--TT-EEEEEEESHHHHHHHHHHCCCTBE-EEEEES
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEECC
Confidence 445568999999999999999999999954 444443
No 209
>PRK14689 hypothetical protein; Provisional
Probab=26.30 E-value=1e+02 Score=26.37 Aligned_cols=43 Identities=12% Similarity=0.242 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCC-------c-cEeEEEEEEecCCCEEEEEEeccCCCc
Q 013241 233 AMGDAAVAAAASIGY-------I-GVGTVEFLLDERGSFYFMEMNTRIQVE 275 (447)
Q Consensus 233 ~l~~~a~~i~~alg~-------~-G~~~vEf~~d~~G~~~~iEiNpR~~g~ 275 (447)
.-++.|.+.++.-|| + ..+.+|++..+++.+.|+||-+|-+..
T Consensus 13 ~gE~~Aa~~L~~~Gy~Il~rN~r~~~GEIDIIa~~~~~lVFVEVKtR~~~~ 63 (124)
T PRK14689 13 WAEERVLRLLQRRGWRLLDRNWSCRWGELDLVLEKQQRLLVVEVKGRRRRG 63 (124)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCCcccEEeeeCCEEEEEEEEECCCCC
Confidence 445677777777765 3 467899998877889999999996533
No 210
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=26.21 E-value=1.8e+02 Score=22.37 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEE
Q 013241 81 EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMI 136 (447)
Q Consensus 81 eia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVv 136 (447)
+.|..+++.++..|+.+..-...... ....+.++..|+|+++
T Consensus 18 ~~a~~~~~~Lr~~g~~v~~~~~~~~~--------------~k~~~~a~~~g~~~~i 59 (94)
T cd00738 18 EYAQKLLNALLANGIRVLYDDRERKI--------------GKKFREADLRGVPFAV 59 (94)
T ss_pred HHHHHHHHHHHHCCCEEEecCCCcCH--------------hHHHHHHHhCCCCEEE
Confidence 46788899999999865432222222 4445566777888543
No 211
>PRK06128 oxidoreductase; Provisional
Probab=26.05 E-value=6e+02 Score=24.47 Aligned_cols=32 Identities=16% Similarity=0.108 Sum_probs=26.2
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEEEe
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav~~ 102 (447)
-+++||.+ .+-++..+++.+.+.|..++..+.
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~ 87 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGADIALNYL 87 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 37899988 578999999999999998765544
No 212
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=25.76 E-value=1.6e+02 Score=28.65 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=25.4
Q ss_pred cEEEEecCcHHHHHHHHHHHHcCCCeeEE
Q 013241 72 EKILVANRGEIAVRVIRTAHEMGIPCVAV 100 (447)
Q Consensus 72 ~kvLianrgeia~ri~r~~~~lGi~~vav 100 (447)
++|||.+.|.++..+++.++.+|+.++.+
T Consensus 157 ~~vlV~g~g~vg~~~~q~a~~~G~~vi~~ 185 (319)
T cd08242 157 DKVAVLGDGKLGLLIAQVLALTGPDVVLV 185 (319)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 68999888999999999999999985544
No 213
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=25.41 E-value=5.5e+02 Score=23.79 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=25.3
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEE
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAV 100 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav 100 (447)
-+++||.+ .|.++..+++.+.+.|..++..
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~ 40 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGAEVILN 40 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCCEEEEE
Confidence 47899998 5899999999999999876554
No 214
>cd00552 RaiA RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD).
Probab=25.29 E-value=2.9e+02 Score=21.53 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCC---CEEEEEEeccCCCccchhhhhcCCCHHHHH
Q 013241 226 LTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERG---SFYFMEMNTRIQVEHPVTEMISSVDLIEEQ 291 (447)
Q Consensus 226 l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G---~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~ 291 (447)
+++.+++.+.+...++.+... .+.++++.++.++ ..|-+|+.-++.+ +.+.-...+-|+....
T Consensus 11 ~t~al~~~i~~k~~kl~r~~~--~i~~~~V~l~~~~~~~~~~~v~i~v~~~g-~~~~a~~~~~d~~~Ai 76 (93)
T cd00552 11 VTDALREYVEEKLEKLEKYFD--RIISVDVVLSVEKNHGKRFKVEITIHLPG-GVLRAEASAEDLYAAI 76 (93)
T ss_pred CCHHHHHHHHHHHHHHHHhcC--CCceEEEEEEEecCCCCceEEEEEEEeCC-CEEEEEEccCCHHHHH
Confidence 678888888888888655552 3556666666333 5788898888874 3333335566655443
No 215
>PRK11761 cysM cysteine synthase B; Provisional
Probab=24.72 E-value=6e+02 Score=24.85 Aligned_cols=54 Identities=11% Similarity=0.148 Sum_probs=41.4
Q ss_pred cEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeC
Q 013241 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKAT 139 (447)
Q Consensus 72 ~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~ 139 (447)
++|+.+..|..+..++-.|+.+|+++..+....-. .+-.+.++.+|--+++-+.
T Consensus 64 ~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~--------------~~k~~~~~~~GA~v~~~~~ 117 (296)
T PRK11761 64 DTLIEATSGNTGIALAMIAAIKGYRMKLIMPENMS--------------QERRAAMRAYGAELILVPK 117 (296)
T ss_pred CEEEEeCCChHHHHHHHHHHHcCCCEEEEECCCCC--------------HHHHHHHHHcCCEEEEeCC
Confidence 56889999999999999999999998877654333 3445566677877776653
No 216
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=24.63 E-value=2e+02 Score=27.97 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=27.3
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEe
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~ 102 (447)
-+++||.+.|.+|..+++++.++|+..+.+..
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~ 154 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGVAEITIVN 154 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 47899999999999999999999976655553
No 217
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=24.38 E-value=6.8e+02 Score=24.55 Aligned_cols=102 Identities=21% Similarity=0.329 Sum_probs=63.3
Q ss_pred HHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCc-EEEEeC--CCCCCcCe---------EEECCHH
Q 013241 87 IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFP-VMIKAT--AGGGGRGM---------RLAKEPD 154 (447)
Q Consensus 87 ~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~P-vVvKP~--~g~Gg~Gv---------~~v~~~~ 154 (447)
-+.+.++|+.+-.+....+. .++.+.+..++-| .|+|+- .|+-|+|+ ++-.++.
T Consensus 28 K~~l~k~Gv~vQ~F~Va~n~--------------kea~E~~k~f~~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk~k~ 93 (412)
T KOG1447|consen 28 KEILSKNGVRVQRFFVADNA--------------KEALEAAKRFNAKEYVVKAQILAGGRGKGVFNNGLKGGVHITKDKN 93 (412)
T ss_pred HHHHHhcCeeEEEEEEecCc--------------HHHHHHHHhcCCcceEEeeeeeecCcccceecCCccceeEEecCHh
Confidence 34577899998888887777 7777777777765 788985 44444444 4567777
Q ss_pred HHHHHHHHHHHHHHHhc--CC-----CcEEEeeccCCCceEEEEEEEeC--CCcEEE
Q 013241 155 EFVKLLQQAKSEAAAAF--GN-----DGVYLEKYVQNPRHIEFQVLADK--YGNVVH 202 (447)
Q Consensus 155 el~~~~~~~~~~~~~~~--~~-----~~~lvEefI~G~~ei~v~vl~d~--~g~vv~ 202 (447)
+..+..++....-...- .. ..++|-|-++-.||--..++-|. .|.++.
T Consensus 94 ~vl~l~~qMIG~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDRe~NGPVlv 150 (412)
T KOG1447|consen 94 VVLQLAKQMIGYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRECNGPVLV 150 (412)
T ss_pred HHHHHHHHHHhhhhhhccCCccceeeeeEEEeeccccchheeeeeeeccccCCCEEE
Confidence 77777666543321111 11 35666666666666555555553 344443
No 218
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=24.34 E-value=6.3e+02 Score=24.29 Aligned_cols=78 Identities=24% Similarity=0.233 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCHH-
Q 013241 151 KEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPE- 229 (447)
Q Consensus 151 ~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~~- 229 (447)
.+.++|.+.++++++.. -.+-.+|+.+|..-+.+-++ |..|+++.--. + ..|...++++
T Consensus 187 ~~~~~l~~eL~~ir~~G------ya~~~~E~~~gv~~vAvPI~-~~~g~~~aals--v-----------s~p~~r~~~~~ 246 (271)
T PRK10163 187 VDMPTLLKDLEQARELG------YTVDKEEHVVGLNCIASAIY-DDVGSVVAAIS--I-----------SGPSSRLTEDR 246 (271)
T ss_pred CCHHHHHHHHHHHHHhC------CeecccccCcCCeEEEEEEE-CCCCCEEEEEE--E-----------EEecccCCHHH
Confidence 45667777777766542 34566889998555666665 44556554311 1 1233334433
Q ss_pred ---HHHHHHHHHHHHHHHcCCc
Q 013241 230 ---LRKAMGDAAVAAAASIGYI 248 (447)
Q Consensus 230 ---~~~~l~~~a~~i~~alg~~ 248 (447)
..+.+.+.+.++-+.||+.
T Consensus 247 ~~~~~~~l~~~A~~is~~lg~~ 268 (271)
T PRK10163 247 FVSQGELVRDTARDISTALGLK 268 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHCCC
Confidence 3346777888888888875
No 219
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=24.32 E-value=1.3e+02 Score=23.46 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEE
Q 013241 81 EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMI 136 (447)
Q Consensus 81 eia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVv 136 (447)
+.+..++..++..|+.+..-..... + ..-.+.++..|+|+++
T Consensus 18 ~~a~~la~~Lr~~g~~v~~d~~~~~---l-----------~k~i~~a~~~g~~~~i 59 (94)
T cd00861 18 ELAEKLYAELQAAGVDVLLDDRNER---P-----------GVKFADADLIGIPYRI 59 (94)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCC---c-----------ccchhHHHhcCCCEEE
Confidence 4688899999999998754332221 1 3334456778888655
No 220
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=24.27 E-value=2.6e+02 Score=23.46 Aligned_cols=33 Identities=12% Similarity=0.200 Sum_probs=26.7
Q ss_pred EEEEecC-cHHHHHHHHHHHH-cCCCeeEEEeccC
Q 013241 73 KILVANR-GEIAVRVIRTAHE-MGIPCVAVYSTID 105 (447)
Q Consensus 73 kvLianr-geia~ri~r~~~~-lGi~~vav~~~~d 105 (447)
||.|.+- |.++..+++.+.+ -|+..+.......
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~ 36 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP 36 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC
Confidence 6888887 9999999999999 7887776655443
No 221
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=24.22 E-value=2.6e+02 Score=29.05 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=27.2
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEe
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~ 102 (447)
-++++|.+-|.++..+++.+...|+..+.+..
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~ 211 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRKGVGKILIAN 211 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCEEEEEe
Confidence 47999999999999999999999976555543
No 222
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=23.96 E-value=5.6e+02 Score=23.43 Aligned_cols=37 Identities=19% Similarity=0.124 Sum_probs=24.1
Q ss_pred cEEEEecCcHHH--HHHHHHHHHcCCCeeEEEeccChhh
Q 013241 72 EKILVANRGEIA--VRVIRTAHEMGIPCVAVYSTIDKDA 108 (447)
Q Consensus 72 ~kvLianrgeia--~ri~r~~~~lGi~~vav~~~~dk~~ 108 (447)
+-|.|.+.|... ..-+.++.+++++.+-+...+....
T Consensus 68 ~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 106 (205)
T cd02003 68 EVYVLVGDGSYLMLHSEIVTAVQEGLKIIIVLFDNHGFG 106 (205)
T ss_pred eEEEEEccchhhccHHHHHHHHHcCCCCEEEEEECCccH
Confidence 455677766544 3456677889999777766655443
No 223
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=23.72 E-value=2.6e+02 Score=26.25 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=28.6
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEecc
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~ 104 (447)
+=-||..++-|-|+.+++++-+-|++++.+....
T Consensus 15 vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~s 48 (211)
T COG0800 15 VVPVIRGDDVEEALPLAKALIEGGIPAIEITLRT 48 (211)
T ss_pred eeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCC
Confidence 4467888899999999999999999998776443
No 224
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=23.57 E-value=2.3e+02 Score=23.59 Aligned_cols=52 Identities=19% Similarity=0.287 Sum_probs=36.9
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEE
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVM 135 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvV 135 (447)
.++-+.|.-.-+....+++.|.++|++.+-+...... +++.+.+++.|.+++
T Consensus 55 ~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g~~~--------------~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 55 PIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPGAES--------------EELIEAAREAGIRVI 106 (116)
T ss_dssp T-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TTS----------------HHHHHHHHHTT-EEE
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcchHH--------------HHHHHHHHHcCCEEE
Confidence 4678888888899999999999999998877776555 788888888887643
No 225
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=22.96 E-value=2e+02 Score=25.76 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=30.8
Q ss_pred CCcEEEEec----CcHHHHHHHHHHHHcCCCeeEEEeccCh
Q 013241 70 RQEKILVAN----RGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (447)
Q Consensus 70 ~~~kvLian----rgeia~ri~r~~~~lGi~~vav~~~~dk 106 (447)
.-+||||.+ .|......++.+++.|..++.+...-|+
T Consensus 103 ~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~~vdr 143 (170)
T PRK13811 103 KGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVTVVDR 143 (170)
T ss_pred CCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEEEEEC
Confidence 347888776 6899999999999999999887776666
No 226
>PRK14677 hypothetical protein; Provisional
Probab=22.55 E-value=2.3e+02 Score=23.53 Aligned_cols=40 Identities=15% Similarity=0.273 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcCC-------c-cEeEEEEEEecCCCEEEEEEeccCC
Q 013241 234 MGDAAVAAAASIGY-------I-GVGTVEFLLDERGSFYFMEMNTRIQ 273 (447)
Q Consensus 234 l~~~a~~i~~alg~-------~-G~~~vEf~~d~~G~~~~iEiNpR~~ 273 (447)
-++.|.+.++.-|| + ..+.+|++..+++.++|+||-+|-+
T Consensus 6 ~E~~A~~~L~~~Gy~Il~rN~r~~~GEIDlIa~~~~~lvFVEVK~~~~ 53 (107)
T PRK14677 6 AEELACKFLKKKGYKILERNYRTKYGEIDIVARDGREIVFVEVKSGSG 53 (107)
T ss_pred HHHHHHHHHHHCCCEEEEEEecCCCceeeEEEEECCEEEEEEEecCCC
Confidence 35677777777765 3 5678999988778899999988643
No 227
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=22.45 E-value=1.3e+02 Score=26.66 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=26.6
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEe
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~ 102 (447)
..||+|.+.|..+...++.+..+|..++....
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~ 51 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDE 51 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEES
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccC
Confidence 47999999999999999999999998776644
No 228
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=22.25 E-value=4.4e+02 Score=27.16 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=29.8
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEec
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~ 103 (447)
+-+|||+..-|.-+.|..+.++.+|.++..+...
T Consensus 79 pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~ 112 (383)
T COG0075 79 PGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVE 112 (383)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCC
Confidence 3479999999999999999999999998776644
No 229
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=22.08 E-value=6.4e+02 Score=23.39 Aligned_cols=33 Identities=6% Similarity=0.027 Sum_probs=26.9
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEEEec
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav~~~ 103 (447)
-+++||.+ .+.++..+++.+.+.|..++.+...
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 47899988 5799999999999999987665443
No 230
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=21.87 E-value=1e+02 Score=29.86 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=24.1
Q ss_pred EEEecCcHHHHHHHHHHHHcCCCeeEEE
Q 013241 74 ILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 74 vLianrgeia~ri~r~~~~lGi~~vav~ 101 (447)
|+|.+.||+|.-++..+.+.|++++...
T Consensus 1 vivrG~gdiAsgva~~L~~aGf~Vv~~e 28 (256)
T TIGR03309 1 VVVRGAGDLATGVAHRLHRSGFKVLMTE 28 (256)
T ss_pred CEEecCchHHHHHHHHHHhCCCEEEEcc
Confidence 5788999999999999999999866443
No 231
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=21.74 E-value=1.9e+02 Score=30.50 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=32.9
Q ss_pred CCCccccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEe
Q 013241 63 GALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 63 ~~~~~~~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~ 102 (447)
+...+....++++|.+.|-|++.++....++|..+.-+..
T Consensus 165 ~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~ 204 (454)
T COG1249 165 DALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVER 204 (454)
T ss_pred hhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEec
Confidence 3345555568999999999999999999999999776654
No 232
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=21.68 E-value=1.4e+02 Score=28.74 Aligned_cols=32 Identities=9% Similarity=0.159 Sum_probs=28.6
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEE
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~ 101 (447)
+-.+++|.+.|.++..+++.++.+|..+..+.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D 130 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVD 130 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEe
Confidence 45799999999999999999999999987664
No 233
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=21.65 E-value=2.1e+02 Score=31.08 Aligned_cols=85 Identities=20% Similarity=0.232 Sum_probs=60.4
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH------------------------------
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI------------------------------ 120 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i------------------------------ 120 (447)
.+=|=|.+++.-...+.+.++++|+++..-....+.......||..++..
T Consensus 80 tkLVQVTg~~g~~~sL~~lArr~G~~~~~~~~P~eeA~~~A~LA~~GvG~ev~~fEdeT~I~VsR~RS~g~GGwSq~RY~ 159 (652)
T COG2433 80 TKLVQVTGRPGEQESLWELARRHGIRVNGKLNPYEEAYACARLASKGVGTEVSVFEDETKITVSRGRSLGPGGWSQNRYR 159 (652)
T ss_pred ceEEEEeCCCCCcchHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCCceeEeeeeeeEEEEEecccCCCCCccHHHHH
Confidence 34556777767777888999999998775555556666667788877755
Q ss_pred -----------HHHHHHhhh--hCCcEEEEeCCCCCCcCeEEECCHHH
Q 013241 121 -----------EEAVKLADE--LGFPVMIKATAGGGGRGMRLAKEPDE 155 (447)
Q Consensus 121 -----------~e~~~~~~~--ig~PvVvKP~~g~Gg~Gv~~v~~~~e 155 (447)
.++.+.+.. +.|-+.++-..||=+.+.|+|+...|
T Consensus 160 R~vh~av~~~~reIee~L~~agldyDl~vr~~~gGi~~a~F~VyA~re 207 (652)
T COG2433 160 RRVHGAVKRVVREIEEKLDEAGLDYDLEVRESYGGISRAEFTVYAPRE 207 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceeEEeeccCccceeEEEEEcChh
Confidence 344444443 45668888888888999998876544
No 234
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=21.41 E-value=3e+02 Score=27.72 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=25.8
Q ss_pred cEEEEecCcHHHHHHHHHHHHcCCCeeEE
Q 013241 72 EKILVANRGEIAVRVIRTAHEMGIPCVAV 100 (447)
Q Consensus 72 ~kvLianrgeia~ri~r~~~~lGi~~vav 100 (447)
++|.|.+-|.++..+++.++..|+.+...
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~ 46 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVG 46 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEE
Confidence 68999999999999999999999976544
No 235
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=21.39 E-value=3.7e+02 Score=27.97 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=29.2
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccC
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~d 105 (447)
-+|+.|......+..+.+.+.++|+.++.+.+...
T Consensus 300 gkrv~v~g~~~~~~~l~~~L~elG~~~~~v~~~~~ 334 (429)
T cd03466 300 GRKAAIYGEPDFVVAITRFVLENGMVPVLIATGSE 334 (429)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCC
Confidence 47999999999999999999999999866665433
No 236
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=21.36 E-value=2.5e+02 Score=27.42 Aligned_cols=31 Identities=13% Similarity=0.353 Sum_probs=27.3
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEE
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~ 101 (447)
.++++|++.|-.|..++..+.++|+..+.++
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~ 157 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIF 157 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEE
Confidence 4799999999999999999999999766555
No 237
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=21.33 E-value=1.6e+02 Score=30.78 Aligned_cols=31 Identities=13% Similarity=0.296 Sum_probs=27.0
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEE
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAV 100 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav 100 (447)
.-++|+|.+-|.++..+++.++.+|..++.+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~ 241 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVT 241 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 3579999999999999999999999975444
No 238
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=21.04 E-value=8.6e+02 Score=24.96 Aligned_cols=29 Identities=10% Similarity=0.216 Sum_probs=25.9
Q ss_pred EEEEecCcHHHHHHHHHHHHcCCCeeEEE
Q 013241 73 KILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 73 kvLianrgeia~ri~r~~~~lGi~~vav~ 101 (447)
+++|.+.|.++..+++.+.+.|.++..+.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid 30 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVID 30 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEE
Confidence 78999999999999999999999876553
No 239
>PF09003 Phage_integ_N: Bacteriophage lambda integrase, N-terminal domain ; InterPro: IPR015094 The amino terminal domain of bacteriophage lambda integrase folds into a three-stranded, antiparallel beta-sheet that packs against a C-terminal alpha-helix, adopting a fold that is structurally related to the three-stranded beta-sheet family of DNA-binding domains (which includes the GCC-box DNA-binding domain and the N-terminal domain of Tn916 integrase). This domain is responsible for high-affinity binding to each of the five DNA arm-type sites and is also a context-sensitive modulator of DNA cleavage []. ; GO: 0003677 DNA binding, 0008907 integrase activity, 0015074 DNA integration; PDB: 1Z1G_B 1Z1B_A 2WCC_3 1KJK_A.
Probab=20.96 E-value=96 Score=24.13 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=19.8
Q ss_pred CccceEEEEEcCCHHHHHHHHHHhh
Q 013241 362 DSLLGKLIVWAPTREKAIERMKRAL 386 (447)
Q Consensus 362 ds~lg~vi~~g~~~~eA~~~~~~al 386 (447)
++.-|+.+..|.|+++|+..+.++=
T Consensus 33 ~P~tGk~~~LG~d~~~Ai~~A~eaN 57 (75)
T PF09003_consen 33 NPITGKEHGLGTDRAEAIAQAIEAN 57 (75)
T ss_dssp -TTTS-EEEEES-HHHHHHHHHHHH
T ss_pred cCCCCceeeCCCCHHHHHHHHHHHH
Confidence 7788999999999999999988774
No 240
>PRK08017 oxidoreductase; Provisional
Probab=20.80 E-value=6e+02 Score=23.39 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=26.2
Q ss_pred CcEEEEecC-cHHHHHHHHHHHHcCCCeeEEEe
Q 013241 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 71 ~~kvLianr-geia~ri~r~~~~lGi~~vav~~ 102 (447)
.+++||.+. |-++..+++.+.+.|..++.+..
T Consensus 2 ~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r 34 (256)
T PRK08017 2 QKSVLITGCSSGIGLEAALELKRRGYRVLAACR 34 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 367999986 89999999999999987665543
No 241
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=20.74 E-value=7.1e+02 Score=23.58 Aligned_cols=78 Identities=21% Similarity=0.298 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCHH-
Q 013241 151 KEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPE- 229 (447)
Q Consensus 151 ~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~~- 229 (447)
.+.+++.+.+++++... -.+-.+|+.+|-.-+.+-++ |..|.++..-. + ..|...++++
T Consensus 175 ~~~~~l~~~l~~iR~~G------ya~~~~e~~~gv~~vA~Pv~-~~~g~~~aals--v-----------~~p~~r~~~~~ 234 (257)
T PRK15090 175 TSTEALLPVLDQVREQG------YGEDNEEQEEGLRCIAVPVF-DRFGVVIAGLS--I-----------SFPTLRFSEER 234 (257)
T ss_pred CCHHHHHHHHHHHHHhC------CCccccccccCCEEEEEEEE-CCCCCEEEEEE--E-----------EeehhhcCHHH
Confidence 46677887777776553 34556889998656666666 45566654211 1 1233323333
Q ss_pred ---HHHHHHHHHHHHHHHcCCc
Q 013241 230 ---LRKAMGDAAVAAAASIGYI 248 (447)
Q Consensus 230 ---~~~~l~~~a~~i~~alg~~ 248 (447)
+.+.+.+.+.++.+.+|+.
T Consensus 235 ~~~~~~~l~~~A~~is~~lg~~ 256 (257)
T PRK15090 235 KQEYVAMLHTAARKISEQMGYH 256 (257)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC
Confidence 4456667777777777764
No 242
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=20.61 E-value=2.2e+02 Score=22.02 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=26.1
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEE
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~ 101 (447)
-++++|.+.|.++..+++.+.+.|...+.++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~ 53 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLC 53 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 4799999999999999999999975555444
No 243
>PRK14673 hypothetical protein; Provisional
Probab=20.55 E-value=1.3e+02 Score=26.29 Aligned_cols=44 Identities=25% Similarity=0.431 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHcCC-------c-cEeEEEEEEec-CCCEEEEEEeccCCCc
Q 013241 232 KAMGDAAVAAAASIGY-------I-GVGTVEFLLDE-RGSFYFMEMNTRIQVE 275 (447)
Q Consensus 232 ~~l~~~a~~i~~alg~-------~-G~~~vEf~~d~-~G~~~~iEiNpR~~g~ 275 (447)
..-++.|.+.++.-|| + ..+.+|++..+ ++.++|+||-+|-+..
T Consensus 30 ~~gE~~A~~~L~~~Gy~IL~rN~r~~~GEIDLIa~~~~~~lVFVEVKtR~~~~ 82 (137)
T PRK14673 30 AAFEDRALAFLQRAGLALVARNYRCRGGEIDLVMRERDGTLVFVEVRARASRR 82 (137)
T ss_pred HHHHHHHHHHHHHCCCEEeEeEecCCCCccCHHHccCCcEEEEEEEEeCCCCC
Confidence 3456677777777765 3 56788988764 4489999999997643
No 244
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=20.38 E-value=3.1e+02 Score=27.63 Aligned_cols=72 Identities=19% Similarity=0.191 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH----------HHHHHHhhhhCCcEEEEeCCCCCCcCeEEE
Q 013241 81 EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------EEAVKLADELGFPVMIKATAGGGGRGMRLA 150 (447)
Q Consensus 81 eia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v 150 (447)
|-=..+.+.|+++|+.....-. |..+. ..+.+.+++. -++++.+.+.|-|+|+|- |+
T Consensus 76 e~~~~L~~~~~~~Gi~~~stpf--d~~sv-d~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilSt-------Gm--- 142 (329)
T TIGR03569 76 EDHRELKEYCESKGIEFLSTPF--DLESA-DFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILST-------GM--- 142 (329)
T ss_pred HHHHHHHHHHHHhCCcEEEEeC--CHHHH-HHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEEC-------CC---
Confidence 3445788999999998665433 32222 1223333333 567777788899999974 44
Q ss_pred CCHHHHHHHHHHHHH
Q 013241 151 KEPDEFVKLLQQAKS 165 (447)
Q Consensus 151 ~~~~el~~~~~~~~~ 165 (447)
.+.+|+..+++.+.+
T Consensus 143 atl~Ei~~Av~~i~~ 157 (329)
T TIGR03569 143 ATLEEIEAAVGVLRD 157 (329)
T ss_pred CCHHHHHHHHHHHHH
Confidence 378999999887754
No 245
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=20.37 E-value=3.8e+02 Score=25.51 Aligned_cols=48 Identities=25% Similarity=0.331 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCC
Q 013241 81 EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGG 142 (447)
Q Consensus 81 eia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~ 142 (447)
+-|++-+++..+.|-..+-+....+. +++.++++..+.|+++-+..+.
T Consensus 160 ~eai~Ra~ay~~AGAD~v~v~~~~~~--------------~~~~~~~~~~~~Pl~~~~~~~~ 207 (243)
T cd00377 160 DEAIERAKAYAEAGADGIFVEGLKDP--------------EEIRAFAEAPDVPLNVNMTPGG 207 (243)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCH--------------HHHHHHHhcCCCCEEEEecCCC
Confidence 56777777778888777766665566 8889999999999999876654
No 246
>PRK08226 short chain dehydrogenase; Provisional
Probab=20.21 E-value=7e+02 Score=23.12 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=24.9
Q ss_pred cEEEEec-CcHHHHHHHHHHHHcCCCeeEEE
Q 013241 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 72 ~kvLian-rgeia~ri~r~~~~lGi~~vav~ 101 (447)
+++||.+ .|-++..+++.+.+.|..++.+.
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~ 37 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLD 37 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEec
Confidence 6888887 67899999999999998866553
No 247
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=20.19 E-value=7.1e+02 Score=23.19 Aligned_cols=66 Identities=23% Similarity=0.316 Sum_probs=43.2
Q ss_pred cEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH-----HHHHHHhh-hhCCcEEEEeCCCC
Q 013241 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI-----EEAVKLAD-ELGFPVMIKATAGG 142 (447)
Q Consensus 72 ~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i-----~e~~~~~~-~ig~PvVvKP~~g~ 142 (447)
|--+|...|..+.+|++.+.+.|..+.++.....|.... +++++ -|....++ -.|+-+||-+..++
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~-----~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR-----QGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc-----ccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 344566689999999999999999999987766553221 23322 12222222 24788888876655
No 248
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=20.11 E-value=3.5e+02 Score=22.29 Aligned_cols=51 Identities=27% Similarity=0.372 Sum_probs=34.8
Q ss_pred EEecCcH--HHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCC
Q 013241 75 LVANRGE--IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGG 142 (447)
Q Consensus 75 Lianrge--ia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~ 142 (447)
.+...|+ --+..++.+++.|++++++.. +. ++.+.+++.+.+++.=|...+
T Consensus 49 ~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~--~~---------------~l~~~~~~~~~~~~~~p~~~~ 101 (119)
T cd05017 49 AVSYSGNTEETLSAVEQAKERGAKIVAITS--GG---------------KLLEMAREHGVPVIIIPKGLQ 101 (119)
T ss_pred EEECCCCCHHHHHHHHHHHHCCCEEEEEeC--Cc---------------hHHHHHHHcCCcEEECCCCCC
Confidence 3444554 567888999999999888764 22 345566667888887776543
Done!