Query 013241
Match_columns 447
No_of_seqs 449 out of 3165
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 06:52:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013241.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013241hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrx_A Acetyl-COA carboxylase 100.0 4.9E-73 1.7E-77 602.2 35.0 358 68-429 53-561 (587)
2 3glk_A Acetyl-COA carboxylase 100.0 1.9E-71 6.6E-76 587.5 30.4 352 68-423 37-539 (540)
3 3u9t_A MCC alpha, methylcroton 100.0 4.3E-72 1.5E-76 606.6 24.9 362 69-430 26-478 (675)
4 3n6r_A Propionyl-COA carboxyla 100.0 3.7E-72 1.3E-76 607.6 22.1 359 70-428 1-469 (681)
5 3ouz_A Biotin carboxylase; str 100.0 1.4E-67 4.6E-72 548.2 40.7 354 68-423 3-446 (446)
6 3hbl_A Pyruvate carboxylase; T 100.0 8.3E-67 2.8E-71 591.0 25.6 358 70-428 3-458 (1150)
7 3va7_A KLLA0E08119P; carboxyla 100.0 1.1E-62 3.8E-67 558.5 29.6 355 68-424 28-472 (1236)
8 2qf7_A Pyruvate carboxylase pr 100.0 2.8E-61 9.5E-66 547.1 31.8 359 70-428 13-476 (1165)
9 2vpq_A Acetyl-COA carboxylase; 100.0 1E-57 3.4E-62 474.5 39.8 357 71-427 1-448 (451)
10 1ulz_A Pyruvate carboxylase N- 100.0 3.1E-57 1.1E-61 470.8 39.4 358 70-427 1-447 (451)
11 2dzd_A Pyruvate carboxylase; b 100.0 6.5E-57 2.2E-61 469.7 38.5 358 67-425 2-457 (461)
12 2w70_A Biotin carboxylase; lig 100.0 1.2E-55 3.9E-60 458.7 39.0 354 70-425 1-445 (449)
13 1w96_A ACC, acetyl-coenzyme A 100.0 3.4E-56 1.2E-60 474.4 35.6 294 126-423 229-553 (554)
14 4dim_A Phosphoribosylglycinami 100.0 5.5E-41 1.9E-45 343.2 32.5 307 70-392 6-401 (403)
15 3vot_A L-amino acid ligase, BL 100.0 3.3E-37 1.1E-41 317.7 27.5 310 70-392 4-414 (425)
16 1a9x_A Carbamoyl phosphate syn 100.0 4.5E-37 1.5E-41 348.8 28.5 276 121-422 153-465 (1073)
17 4ffl_A PYLC; amino acid, biosy 100.0 9.3E-37 3.2E-41 307.9 24.4 289 71-391 1-357 (363)
18 4e4t_A Phosphoribosylaminoimid 100.0 1.9E-34 6.3E-39 296.8 31.9 300 70-391 34-416 (419)
19 3k5i_A Phosphoribosyl-aminoimi 100.0 2.4E-34 8.3E-39 294.6 31.1 295 71-389 24-398 (403)
20 1kjq_A GART 2, phosphoribosylg 100.0 2E-34 6.9E-39 293.3 30.0 305 69-393 9-391 (391)
21 2dwc_A PH0318, 433AA long hypo 100.0 1.4E-33 4.8E-38 291.3 32.4 315 69-396 17-418 (433)
22 3aw8_A PURK, phosphoribosylami 100.0 1.5E-33 5E-38 285.1 31.1 286 73-390 1-361 (369)
23 3eth_A Phosphoribosylaminoimid 100.0 3.5E-33 1.2E-37 280.9 29.7 284 71-390 1-340 (355)
24 2z04_A Phosphoribosylaminoimid 100.0 3.5E-33 1.2E-37 281.8 25.2 295 71-397 1-363 (365)
25 3q2o_A Phosphoribosylaminoimid 100.0 5.8E-32 2E-36 275.6 31.5 289 71-386 14-376 (389)
26 3ax6_A Phosphoribosylaminoimid 100.0 5.7E-32 1.9E-36 274.5 29.1 297 71-393 1-372 (380)
27 3vmm_A Alanine-anticapsin liga 100.0 9.5E-32 3.2E-36 280.6 29.2 316 71-392 103-467 (474)
28 1vkz_A Phosphoribosylamine--gl 100.0 1.5E-31 5E-36 274.7 28.7 275 87-395 111-405 (412)
29 3orq_A N5-carboxyaminoimidazol 100.0 7.8E-32 2.7E-36 273.7 25.9 286 70-386 11-373 (377)
30 2yw2_A Phosphoribosylamine--gl 100.0 3.7E-31 1.3E-35 272.4 27.7 304 71-395 63-409 (424)
31 2ip4_A PURD, phosphoribosylami 100.0 2.7E-30 9.3E-35 265.4 32.1 303 71-394 62-401 (417)
32 3mjf_A Phosphoribosylamine--gl 100.0 2.1E-29 7.2E-34 260.1 30.6 303 82-394 79-416 (431)
33 2qk4_A Trifunctional purine bi 100.0 5.1E-30 1.8E-34 266.2 25.0 303 79-394 95-437 (452)
34 3lp8_A Phosphoribosylamine-gly 100.0 4E-29 1.4E-33 258.8 28.6 311 71-394 84-431 (442)
35 2yrx_A Phosphoribosylglycinami 100.0 2.5E-28 8.6E-33 253.4 29.6 304 71-394 84-427 (451)
36 2xcl_A Phosphoribosylamine--gl 100.0 6.1E-28 2.1E-32 248.2 29.2 302 79-394 69-406 (422)
37 1a9x_A Carbamoyl phosphate syn 99.9 2.5E-26 8.7E-31 260.7 25.0 241 71-319 635-895 (1073)
38 4fu0_A D-alanine--D-alanine li 99.9 6.6E-27 2.3E-31 235.7 16.7 222 27-293 110-342 (357)
39 3e5n_A D-alanine-D-alanine lig 99.9 3.8E-26 1.3E-30 232.4 15.1 190 87-294 164-365 (386)
40 3i12_A D-alanine-D-alanine lig 99.9 3.6E-25 1.2E-29 223.6 20.2 190 87-294 145-346 (364)
41 3tqt_A D-alanine--D-alanine li 99.9 1.4E-25 4.8E-30 227.1 15.3 223 28-294 112-347 (372)
42 3k3p_A D-alanine--D-alanine li 99.9 9E-25 3.1E-29 221.9 20.5 216 71-294 120-367 (383)
43 1ehi_A LMDDL2, D-alanine:D-lac 99.9 5.7E-24 2E-28 215.8 24.5 220 71-297 94-353 (377)
44 3lwb_A D-alanine--D-alanine li 99.9 1.1E-25 3.6E-30 228.2 11.3 187 87-296 156-366 (373)
45 2i87_A D-alanine-D-alanine lig 99.9 6.4E-24 2.2E-28 214.3 21.5 214 71-293 88-336 (364)
46 4eg0_A D-alanine--D-alanine li 99.9 5.8E-24 2E-28 210.5 19.7 202 85-295 82-311 (317)
47 2pn1_A Carbamoylphosphate synt 99.9 1.9E-23 6.3E-28 207.4 17.7 200 83-302 87-301 (331)
48 2fb9_A D-alanine:D-alanine lig 99.9 2.9E-23 9.8E-28 206.2 18.5 213 71-294 77-316 (322)
49 3r5x_A D-alanine--D-alanine li 99.9 5.8E-23 2E-27 201.9 20.3 213 71-295 56-295 (307)
50 1e4e_A Vancomycin/teicoplanin 99.9 3.9E-23 1.3E-27 206.8 18.9 213 71-295 91-337 (343)
51 3se7_A VANA; alpha-beta struct 99.9 3.3E-23 1.1E-27 207.7 18.3 201 85-294 107-336 (346)
52 1iow_A DD-ligase, DDLB, D-ALA\ 99.9 8.9E-23 3E-27 199.9 20.0 200 86-296 72-303 (306)
53 2pvp_A D-alanine-D-alanine lig 99.9 9.1E-22 3.1E-26 198.8 18.1 214 71-300 108-349 (367)
54 1uc8_A LYSX, lysine biosynthes 99.9 8.2E-22 2.8E-26 190.2 15.0 204 81-298 60-278 (280)
55 3df7_A Putative ATP-grAsp supe 99.8 1.3E-20 4.6E-25 185.6 12.5 196 70-294 69-271 (305)
56 2r85_A PURP protein PF1517; AT 99.8 9.1E-20 3.1E-24 180.6 15.7 194 78-275 68-291 (334)
57 2r7k_A 5-formaminoimidazole-4- 99.8 1.5E-17 5E-22 167.3 19.3 184 92-279 107-322 (361)
58 1wr2_A Hypothetical protein PH 99.7 9.8E-18 3.3E-22 159.2 11.8 171 87-274 26-219 (238)
59 2pbz_A Hypothetical protein; N 99.7 5.9E-18 2E-22 167.2 8.1 188 73-275 4-272 (320)
60 3ln7_A Glutathione biosynthesi 99.7 3.3E-16 1.1E-20 170.4 16.9 186 87-297 494-754 (757)
61 3ln6_A Glutathione biosynthesi 99.7 5.6E-16 1.9E-20 169.0 14.6 185 87-296 489-747 (750)
62 1i7n_A Synapsin II; synapse, p 99.6 1E-15 3.5E-20 150.2 14.0 194 85-295 89-303 (309)
63 2p0a_A Synapsin-3, synapsin II 99.6 1.1E-15 3.7E-20 151.8 14.2 196 85-297 106-322 (344)
64 1pk8_A RAT synapsin I; ATP bin 99.6 1.3E-15 4.4E-20 154.0 14.6 194 85-295 201-415 (422)
65 1gsa_A Glutathione synthetase; 99.6 1.7E-15 5.7E-20 148.3 15.1 194 82-297 97-311 (316)
66 1z2n_X Inositol 1,3,4-trisphos 99.6 1.8E-15 6.1E-20 149.4 14.5 154 103-275 96-302 (324)
67 2cqy_A Propionyl-COA carboxyla 99.5 1.3E-14 4.5E-19 119.7 5.4 89 91-193 17-107 (108)
68 2q7d_A Inositol-tetrakisphosph 99.4 3.3E-12 1.1E-16 127.6 14.6 184 70-273 63-312 (346)
69 2fp4_B Succinyl-COA ligase [GD 99.3 2.6E-12 9E-17 130.2 7.5 165 87-273 9-210 (395)
70 2nu8_B SCS-beta, succinyl-COA 99.3 6.8E-12 2.3E-16 127.0 8.0 164 87-273 9-203 (388)
71 3t7a_A Inositol pyrophosphate 98.9 9.7E-10 3.3E-14 105.8 6.1 184 71-275 80-293 (330)
72 3ufx_B Succinyl-COA synthetase 98.8 1.3E-08 4.6E-13 103.1 9.6 104 87-204 9-118 (397)
73 3tig_A TTL protein; ATP-grAsp, 98.3 8.9E-06 3E-10 81.4 14.0 157 130-300 146-362 (380)
74 3mwd_A ATP-citrate synthase; A 96.7 0.0019 6.7E-08 65.5 6.6 84 121-204 41-135 (425)
75 3pff_A ATP-citrate synthase; p 96.1 0.017 5.7E-07 63.2 10.0 84 121-204 41-135 (829)
76 3n6x_A Putative glutathionylsp 90.0 0.34 1.2E-05 49.6 5.7 69 95-184 341-411 (474)
77 3fwz_A Inner membrane protein 75.0 5.8 0.0002 32.8 6.3 33 71-103 7-39 (140)
78 2lci_A Protein OR36; structura 73.5 25 0.00084 27.3 8.8 78 66-167 46-124 (134)
79 2ywr_A Phosphoribosylglycinami 72.0 7.6 0.00026 35.2 6.7 54 71-138 1-59 (216)
80 3auf_A Glycinamide ribonucleot 71.3 9.6 0.00033 34.9 7.2 52 71-136 22-77 (229)
81 3llv_A Exopolyphosphatase-rela 68.2 8.2 0.00028 31.6 5.7 32 71-102 6-37 (141)
82 2l69_A Rossmann 2X3 fold prote 60.1 57 0.002 25.2 8.4 71 73-167 54-124 (134)
83 3av3_A Phosphoribosylglycinami 59.8 28 0.00096 31.2 8.0 53 72-138 4-61 (212)
84 3bzy_B ESCU; auto cleavage pro 56.2 9.9 0.00034 29.0 3.6 28 71-98 17-44 (83)
85 2vob_A Trypanothione synthetas 56.0 13 0.00045 39.5 5.7 45 133-184 544-588 (652)
86 2vt1_B Surface presentation of 52.3 11 0.00038 29.4 3.3 28 71-98 17-44 (93)
87 3l4b_C TRKA K+ channel protien 51.4 30 0.001 30.6 6.7 30 73-102 2-31 (218)
88 2hmt_A YUAA protein; RCK, KTN, 51.4 11 0.00039 30.4 3.5 32 70-101 5-36 (144)
89 3dfz_A SIRC, precorrin-2 dehyd 48.6 39 0.0013 30.6 7.0 38 64-101 24-61 (223)
90 3t7y_A YOP proteins translocat 48.3 12 0.00042 29.4 3.0 28 71-98 32-59 (97)
91 3c01_E Surface presentation of 47.6 13 0.00044 29.4 3.0 28 71-98 17-44 (98)
92 3l9w_A Glutathione-regulated p 46.7 20 0.0007 35.7 5.2 33 72-104 5-37 (413)
93 3i4f_A 3-oxoacyl-[acyl-carrier 46.6 95 0.0033 27.8 9.5 34 68-101 4-38 (264)
94 3ic5_A Putative saccharopine d 46.5 16 0.00055 28.3 3.6 30 70-99 4-34 (118)
95 1id1_A Putative potassium chan 45.8 42 0.0014 27.7 6.4 31 72-102 4-34 (153)
96 3k1t_A Glutamate--cysteine lig 45.4 7.2 0.00024 38.6 1.5 51 134-184 280-333 (432)
97 3ius_A Uncharacterized conserv 45.3 17 0.00057 33.4 4.1 36 68-103 2-37 (286)
98 2io8_A Bifunctional glutathion 45.2 9.7 0.00033 40.2 2.6 45 133-184 529-573 (619)
99 2g1u_A Hypothetical protein TM 45.1 25 0.00087 29.2 4.9 32 71-102 19-50 (155)
100 3mq0_A Transcriptional repress 44.1 1.5E+02 0.005 27.4 10.5 79 151-249 190-272 (275)
101 3c85_A Putative glutathione-re 43.9 30 0.001 29.5 5.3 31 72-102 40-71 (183)
102 2l82_A Designed protein OR32; 42.6 1.3E+02 0.0043 24.0 9.8 67 76-166 8-74 (162)
103 3obf_A Putative transcriptiona 40.6 1.2E+02 0.0042 25.5 8.8 78 151-249 94-175 (176)
104 1tf1_A Negative regulator of a 39.7 1.8E+02 0.0062 25.1 9.9 80 150-249 113-196 (198)
105 3ijr_A Oxidoreductase, short c 39.1 2.3E+02 0.0078 25.9 13.5 32 71-102 47-79 (291)
106 1lss_A TRK system potassium up 39.0 78 0.0027 24.9 6.9 29 72-100 5-33 (140)
107 2g7u_A Transcriptional regulat 39.0 2E+02 0.0067 26.1 10.4 80 150-249 173-257 (257)
108 4fs3_A Enoyl-[acyl-carrier-pro 38.9 2E+02 0.0069 25.8 10.5 75 70-166 5-83 (256)
109 2r85_A PURP protein PF1517; AT 37.8 25 0.00085 33.1 4.0 32 72-104 3-34 (334)
110 4fn4_A Short chain dehydrogena 37.7 1.8E+02 0.0062 26.5 9.9 73 72-166 8-81 (254)
111 3grp_A 3-oxoacyl-(acyl carrier 37.3 2.3E+02 0.008 25.5 11.1 35 66-100 22-57 (266)
112 3fbt_A Chorismate mutase and s 37.2 66 0.0023 30.2 6.8 35 71-106 122-156 (282)
113 3k31_A Enoyl-(acyl-carrier-pro 37.0 1.8E+02 0.006 26.8 9.9 34 70-103 29-65 (296)
114 2jli_A YSCU, YOP proteins tran 36.2 26 0.00088 28.8 3.2 28 71-98 61-88 (123)
115 3t7c_A Carveol dehydrogenase; 35.9 2.6E+02 0.0088 25.6 12.1 34 70-103 27-61 (299)
116 3bzs_A ESCU; auto cleavage pro 35.4 26 0.0009 29.3 3.2 28 71-98 71-98 (137)
117 1ysp_A Transcriptional regulat 35.1 2E+02 0.007 24.2 10.5 79 150-248 93-175 (181)
118 2wqp_A Polysialic acid capsule 34.7 1.3E+02 0.0045 29.1 8.6 84 81-183 91-184 (349)
119 4gkb_A 3-oxoacyl-[acyl-carrier 34.4 2.4E+02 0.0082 25.7 10.2 35 72-106 8-43 (258)
120 3tqr_A Phosphoribosylglycinami 34.2 76 0.0026 28.5 6.4 51 72-136 6-59 (215)
121 3oec_A Carveol dehydrogenase ( 34.1 2.1E+02 0.0071 26.6 10.0 34 70-103 45-79 (317)
122 2jlj_A YSCU, YOP proteins tran 33.8 29 0.00098 29.3 3.2 28 71-98 70-97 (144)
123 3oj0_A Glutr, glutamyl-tRNA re 33.5 37 0.0013 27.7 4.0 45 71-131 21-65 (144)
124 3r1i_A Short-chain type dehydr 33.5 2.7E+02 0.0093 25.2 10.7 32 71-102 32-64 (276)
125 3rfo_A Methionyl-tRNA formyltr 33.2 1.3E+02 0.0045 28.6 8.3 62 72-138 5-66 (317)
126 3fov_A UPF0102 protein RPA0323 33.0 48 0.0016 27.6 4.5 42 233-274 25-74 (134)
127 2pn1_A Carbamoylphosphate synt 32.2 52 0.0018 30.8 5.3 63 71-136 4-77 (331)
128 2yzt_A Putative uncharacterize 31.5 34 0.0012 24.5 3.0 20 369-388 27-46 (67)
129 3r4k_A Transcriptional regulat 31.1 2.3E+02 0.0078 25.7 9.4 79 151-249 168-250 (260)
130 4ea9_A Perosamine N-acetyltran 31.0 65 0.0022 28.5 5.5 36 67-102 8-43 (220)
131 1kyq_A Met8P, siroheme biosynt 31.0 29 0.001 32.5 3.2 39 65-103 7-45 (274)
132 3n6x_A Putative glutathionylsp 30.5 42 0.0014 34.1 4.4 27 249-275 143-169 (474)
133 3b1s_B Flagellar biosynthetic 36.5 11 0.00037 29.1 0.0 29 71-99 17-45 (87)
134 4ds3_A Phosphoribosylglycinami 30.1 1.9E+02 0.0063 25.8 8.3 50 74-137 12-63 (209)
135 1vli_A Spore coat polysacchari 30.1 65 0.0022 31.8 5.6 86 81-184 101-196 (385)
136 2bln_A Protein YFBG; transfera 29.5 1.6E+02 0.0055 27.7 8.2 56 73-135 2-57 (305)
137 4ew6_A D-galactose-1-dehydroge 29.3 2.2E+02 0.0075 26.8 9.3 31 72-102 26-58 (330)
138 1vs1_A 3-deoxy-7-phosphoheptul 29.3 1.9E+02 0.0065 26.9 8.5 72 81-165 88-170 (276)
139 1y88_A Hypothetical protein AF 29.2 80 0.0028 28.1 5.6 41 232-272 18-69 (199)
140 3r3s_A Oxidoreductase; structu 29.0 3.3E+02 0.011 24.8 12.6 33 71-103 49-82 (294)
141 3kzv_A Uncharacterized oxidore 29.0 3E+02 0.01 24.3 10.3 35 72-106 3-38 (254)
142 3n74_A 3-ketoacyl-(acyl-carrie 28.7 3.1E+02 0.01 24.2 11.2 30 71-100 9-39 (261)
143 3osu_A 3-oxoacyl-[acyl-carrier 28.7 3E+02 0.01 24.2 10.3 31 71-101 4-35 (246)
144 1fmt_A Methionyl-tRNA FMet for 28.6 1.9E+02 0.0065 27.4 8.6 62 72-138 4-65 (314)
145 4fgs_A Probable dehydrogenase 28.6 3.2E+02 0.011 25.1 10.0 70 72-166 30-100 (273)
146 3sz8_A 2-dehydro-3-deoxyphosph 28.5 1.2E+02 0.004 28.6 6.8 80 81-178 77-167 (285)
147 3two_A Mannitol dehydrogenase; 28.3 90 0.0031 29.6 6.3 36 71-106 177-212 (348)
148 2r6j_A Eugenol synthase 1; phe 28.1 76 0.0026 29.4 5.6 35 70-104 10-45 (318)
149 1mkm_A ICLR transcriptional re 28.0 2.8E+02 0.0097 24.8 9.5 78 150-247 168-249 (249)
150 4g65_A TRK system potassium up 27.9 53 0.0018 33.1 4.7 48 73-136 5-52 (461)
151 3i6i_A Putative leucoanthocyan 27.9 1.2E+02 0.004 28.5 7.1 34 71-104 10-44 (346)
152 4iin_A 3-ketoacyl-acyl carrier 27.8 3.3E+02 0.011 24.3 10.6 32 71-102 29-61 (271)
153 3oid_A Enoyl-[acyl-carrier-pro 27.8 3.3E+02 0.011 24.3 10.0 29 72-100 5-34 (258)
154 3is3_A 17BETA-hydroxysteroid d 27.8 3.3E+02 0.011 24.3 10.8 31 71-101 18-49 (270)
155 2bw0_A 10-FTHFDH, 10-formyltet 27.7 1.1E+02 0.0037 29.4 6.7 55 72-136 23-77 (329)
156 3pwz_A Shikimate dehydrogenase 27.7 1.2E+02 0.0042 28.0 7.0 35 71-106 120-154 (272)
157 1iow_A DD-ligase, DDLB, D-ALA\ 27.6 50 0.0017 30.5 4.2 33 71-103 2-43 (306)
158 3t4e_A Quinate/shikimate dehyd 27.3 1.3E+02 0.0044 28.6 7.1 32 71-102 148-179 (312)
159 1npy_A Hypothetical shikimate 26.9 95 0.0033 28.7 6.0 30 72-101 120-149 (271)
160 3r6d_A NAD-dependent epimerase 26.8 76 0.0026 27.6 5.1 34 69-102 3-38 (221)
161 3da8_A Probable 5'-phosphoribo 26.7 84 0.0029 28.2 5.3 52 71-137 12-66 (215)
162 1u07_A TONB protein; beta-hair 26.7 86 0.0029 23.5 4.7 26 243-268 19-44 (90)
163 3u5t_A 3-oxoacyl-[acyl-carrier 26.5 3.5E+02 0.012 24.2 10.3 30 72-101 28-58 (267)
164 3q0i_A Methionyl-tRNA formyltr 26.3 1.9E+02 0.0065 27.5 8.1 62 72-138 8-69 (318)
165 3m6i_A L-arabinitol 4-dehydrog 26.1 1E+02 0.0035 29.3 6.3 46 71-116 180-226 (363)
166 3v8b_A Putative dehydrogenase, 26.1 3.7E+02 0.013 24.4 10.0 32 70-101 27-59 (283)
167 3v2g_A 3-oxoacyl-[acyl-carrier 26.1 3.6E+02 0.012 24.2 11.1 31 71-101 31-62 (271)
168 3tqq_A Methionyl-tRNA formyltr 25.9 1.8E+02 0.0062 27.5 7.9 61 73-139 4-65 (314)
169 3uko_A Alcohol dehydrogenase c 25.6 93 0.0032 29.9 5.9 36 71-106 194-230 (378)
170 3p2y_A Alanine dehydrogenase/p 25.5 1.9E+02 0.0065 28.3 8.1 30 71-100 184-213 (381)
171 3tfo_A Putative 3-oxoacyl-(acy 25.4 3.7E+02 0.013 24.1 10.0 30 72-101 5-35 (264)
172 4dmm_A 3-oxoacyl-[acyl-carrier 25.3 3.7E+02 0.013 24.1 10.4 32 70-101 27-59 (269)
173 3fpc_A NADP-dependent alcohol 25.1 85 0.0029 29.9 5.5 36 71-106 167-203 (352)
174 3sju_A Keto reductase; short-c 25.1 3.7E+02 0.013 24.2 9.9 30 72-101 25-55 (279)
175 2o99_A Acetate operon represso 25.1 2.6E+02 0.0089 23.5 8.2 79 150-248 97-179 (182)
176 1jkx_A GART;, phosphoribosylgl 24.9 1.2E+02 0.0042 26.9 6.1 49 74-136 5-55 (212)
177 1h2b_A Alcohol dehydrogenase; 24.8 1.5E+02 0.0052 28.2 7.2 32 71-102 187-219 (359)
178 2rhc_B Actinorhodin polyketide 24.8 3.8E+02 0.013 24.0 11.7 31 71-101 22-53 (277)
179 3jyo_A Quinate/shikimate dehyd 24.6 1.4E+02 0.0048 27.8 6.7 35 71-106 127-161 (283)
180 3tnl_A Shikimate dehydrogenase 24.3 1.5E+02 0.0051 28.1 6.9 32 71-102 154-185 (315)
181 3l6e_A Oxidoreductase, short-c 24.3 3.6E+02 0.012 23.6 10.3 31 71-101 3-34 (235)
182 3ppi_A 3-hydroxyacyl-COA dehyd 24.2 3.9E+02 0.013 23.9 9.9 31 70-100 29-60 (281)
183 3b0z_B Flagellar biosynthetic 30.0 16 0.00055 29.6 0.0 29 71-99 17-45 (114)
184 4dyv_A Short-chain dehydrogena 24.0 4E+02 0.014 24.0 9.9 31 70-100 27-58 (272)
185 1piw_A Hypothetical zinc-type 23.9 1.2E+02 0.0042 28.8 6.4 36 71-106 180-215 (360)
186 3qiv_A Short-chain dehydrogena 23.7 3.7E+02 0.013 23.5 10.3 31 71-101 9-40 (253)
187 4ibo_A Gluconate dehydrogenase 23.7 3.2E+02 0.011 24.6 9.1 35 66-100 21-56 (271)
188 3ezl_A Acetoacetyl-COA reducta 23.7 3.7E+02 0.013 23.5 9.5 31 71-101 13-44 (256)
189 1meo_A Phosophoribosylglycinam 23.6 1.1E+02 0.0036 27.3 5.4 52 74-139 5-59 (209)
190 4e6p_A Probable sorbitol dehyd 23.5 3.9E+02 0.013 23.6 11.6 30 71-100 8-38 (259)
191 3tzq_B Short-chain type dehydr 23.4 4E+02 0.014 23.8 10.4 33 71-103 11-44 (271)
192 2r7k_A 5-formaminoimidazole-4- 23.4 73 0.0025 30.9 4.6 33 72-105 19-51 (361)
193 3o8q_A Shikimate 5-dehydrogena 23.4 1.3E+02 0.0044 28.1 6.2 31 71-101 126-156 (281)
194 4iiu_A 3-oxoacyl-[acyl-carrier 23.4 3.9E+02 0.013 23.7 10.3 32 68-99 23-55 (267)
195 3ip1_A Alcohol dehydrogenase, 23.4 1.3E+02 0.0045 29.2 6.6 36 71-106 214-250 (404)
196 3l77_A Short-chain alcohol deh 23.3 2.8E+02 0.0096 24.0 8.4 31 71-101 2-33 (235)
197 3edm_A Short chain dehydrogena 23.3 3.9E+02 0.013 23.7 10.6 32 71-102 8-40 (259)
198 1vr6_A Phospho-2-dehydro-3-deo 23.2 2E+02 0.0068 27.8 7.6 37 121-166 203-239 (350)
199 4g81_D Putative hexonate dehyd 23.2 2.8E+02 0.0094 25.3 8.4 34 68-101 6-40 (255)
200 2ijl_A AGR_C_4647P, molybdenum 22.9 84 0.0029 26.0 4.2 44 123-166 59-102 (135)
201 3o38_A Short chain dehydrogena 22.8 4E+02 0.014 23.6 10.7 31 71-101 22-54 (266)
202 4eg0_A D-alanine--D-alanine li 22.8 76 0.0026 29.7 4.5 32 70-101 12-52 (317)
203 4fc7_A Peroxisomal 2,4-dienoyl 22.8 4.1E+02 0.014 23.8 9.6 31 71-101 27-58 (277)
204 3gpi_A NAD-dependent epimerase 22.8 91 0.0031 28.3 5.0 33 71-103 3-35 (286)
205 3uog_A Alcohol dehydrogenase; 22.7 1.1E+02 0.0036 29.3 5.7 32 71-102 190-221 (363)
206 3g8r_A Probable spore coat pol 22.7 1.4E+02 0.0048 28.9 6.4 71 82-165 79-159 (350)
207 3gvc_A Oxidoreductase, probabl 22.6 4.2E+02 0.014 23.9 9.6 31 71-101 29-60 (277)
208 3fs2_A 2-dehydro-3-deoxyphosph 22.6 1.2E+02 0.0041 28.7 5.8 80 81-178 98-188 (298)
209 3s2e_A Zinc-containing alcohol 22.6 91 0.0031 29.4 5.1 32 71-102 167-198 (340)
210 2dsy_A Hypothetical protein TT 22.6 48 0.0016 25.2 2.4 21 368-388 39-59 (87)
211 3goh_A Alcohol dehydrogenase, 22.3 1.1E+02 0.0036 28.6 5.5 35 71-106 143-177 (315)
212 3aek_B Light-independent proto 22.2 3.5E+02 0.012 27.5 9.7 33 71-103 280-313 (525)
213 3s55_A Putative short-chain de 22.2 4.2E+02 0.015 23.7 10.3 33 71-103 10-43 (281)
214 2qkf_A 3-deoxy-D-manno-octulos 22.1 2.5E+02 0.0086 26.1 7.9 75 81-165 72-154 (280)
215 3grk_A Enoyl-(acyl-carrier-pro 21.9 4.3E+02 0.015 24.0 9.7 32 71-102 31-65 (293)
216 1zco_A 2-dehydro-3-deoxyphosph 21.8 2.2E+02 0.0076 26.1 7.4 69 84-165 77-155 (262)
217 3s2u_A UDP-N-acetylglucosamine 21.8 4.8E+02 0.016 24.5 10.3 31 70-100 1-36 (365)
218 3pgx_A Carveol dehydrogenase; 21.8 4.3E+02 0.015 23.6 10.2 32 71-102 15-47 (280)
219 4dio_A NAD(P) transhydrogenase 21.7 1.1E+02 0.0037 30.4 5.4 31 71-101 190-220 (405)
220 3v2h_A D-beta-hydroxybutyrate 21.7 4.5E+02 0.015 23.7 10.4 35 66-100 20-55 (281)
221 3svt_A Short-chain type dehydr 21.7 4.4E+02 0.015 23.6 10.2 32 70-101 10-42 (281)
222 1g0o_A Trihydroxynaphthalene r 21.6 4.4E+02 0.015 23.6 11.6 31 71-101 29-60 (283)
223 3pdi_B Nitrogenase MOFE cofact 21.6 1.2E+02 0.0042 30.4 6.0 34 71-104 313-346 (458)
224 2egg_A AROE, shikimate 5-dehyd 21.5 1.6E+02 0.0055 27.4 6.5 35 71-106 141-175 (297)
225 4h27_A L-serine dehydratase/L- 21.4 5.3E+02 0.018 24.6 10.5 53 71-137 93-145 (364)
226 1uuf_A YAHK, zinc-type alcohol 21.4 1.5E+02 0.0051 28.5 6.4 36 71-106 195-230 (369)
227 1pjq_A CYSG, siroheme synthase 21.3 1.3E+02 0.0044 30.1 6.1 37 65-101 6-42 (457)
228 1leh_A Leucine dehydrogenase; 21.0 1.5E+02 0.0051 28.8 6.3 34 71-106 173-206 (364)
229 4had_A Probable oxidoreductase 21.0 4.8E+02 0.017 24.2 10.0 93 71-184 23-121 (350)
230 4e3z_A Putative oxidoreductase 21.0 4.4E+02 0.015 23.4 10.0 30 71-100 26-56 (272)
231 4eye_A Probable oxidoreductase 21.0 1.4E+02 0.0049 28.1 6.2 36 71-106 160-196 (342)
232 4da9_A Short-chain dehydrogena 20.9 4.6E+02 0.016 23.6 10.8 31 71-101 29-60 (280)
233 3ftp_A 3-oxoacyl-[acyl-carrier 20.9 4.6E+02 0.016 23.5 9.5 32 71-102 28-60 (270)
234 3lyl_A 3-oxoacyl-(acyl-carrier 20.8 4.2E+02 0.014 23.0 9.6 32 71-102 5-37 (247)
235 3ucx_A Short chain dehydrogena 20.6 4.5E+02 0.015 23.3 10.5 31 71-101 11-42 (264)
236 1pl8_A Human sorbitol dehydrog 20.5 1.3E+02 0.0044 28.6 5.7 32 71-102 172-204 (356)
237 3phh_A Shikimate dehydrogenase 20.4 1.6E+02 0.0054 27.3 6.1 30 71-101 118-147 (269)
238 1o60_A 2-dehydro-3-deoxyphosph 20.3 2.8E+02 0.0097 25.9 7.9 72 81-165 75-157 (292)
239 3tml_A 2-dehydro-3-deoxyphosph 20.2 2.7E+02 0.0094 26.1 7.7 74 81-167 74-158 (288)
240 3mz0_A Inositol 2-dehydrogenas 20.2 4.8E+02 0.016 24.3 9.8 31 71-101 2-34 (344)
No 1
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=100.00 E-value=4.9e-73 Score=602.17 Aligned_cols=358 Identities=38% Similarity=0.598 Sum_probs=305.8
Q ss_pred ccCCcEEEEecCcHHHHHHHHHHHHc---------CCCeeEEEeccC--hhhHHHHHhccccCH----------------
Q 013241 68 TCRQEKILVANRGEIAVRVIRTAHEM---------GIPCVAVYSTID--KDALHVKLADESVCI---------------- 120 (447)
Q Consensus 68 ~~~~~kvLianrgeia~ri~r~~~~l---------Gi~~vav~~~~d--k~~~~~~lad~~v~i---------------- 120 (447)
.+||+|||||||||+|+||+|+|+++ |+.++++++..| +++++.++||+.+++
T Consensus 53 ~~~~~kvLIanrGeiA~riira~r~lG~e~f~~e~Gi~tVav~s~~D~~~~a~~~~~ADe~v~i~~~~~~~syld~~~Il 132 (587)
T 3jrx_A 53 DRVIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELIV 132 (587)
T ss_dssp CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEECCCSSGGGTTTCHHHHH
T ss_pred CcccCEEEEECChHHHHHHHHHHHHhhhccccccCCceEEEEecccccCcCChhhHhCCEEEEeCCCCccccccCHHHHH
Confidence 46799999999999999999999987 899999999777 889999999987654
Q ss_pred -------------------------------------------------------------------H------------
Q 013241 121 -------------------------------------------------------------------E------------ 121 (447)
Q Consensus 121 -------------------------------------------------------------------~------------ 121 (447)
.
T Consensus 133 ~~a~~~~vdaV~pG~GflsEn~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~ak~ll~~aGVPvpp~~~~~l~~~~~~~~~ 212 (587)
T 3jrx_A 133 DIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDL 212 (587)
T ss_dssp HHHHHTTCSEEECCSSTTTTCTHHHHHHHTTTCEESSCCHHHHHHHCSHHHHHHHHHHTTCCBCCBTTTTCCCCC-----
T ss_pred HHHHHhCCCEEEeCCCccccCHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCCCCCCeeccccccccccccc
Confidence 2
Q ss_pred ----------------------HHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEe
Q 013241 122 ----------------------EAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLE 179 (447)
Q Consensus 122 ----------------------e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvE 179 (447)
++.++++++|||+||||..|+||+||++|++.+|+.++++.+..++ .+..++||
T Consensus 213 ~~~~~~~~~~~~~~~~~v~s~eea~~~a~~iGyPvVVKp~~GgGGkGv~iV~s~eEL~~a~~~a~~~~----~~~~vlVE 288 (587)
T 3jrx_A 213 QQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEI----PGSPIFLM 288 (587)
T ss_dssp -CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHCSSEEEEETTCCSSSSEEEECSTTTHHHHHHHHHHHS----TTCCEEEE
T ss_pred ccccccccchhhccccccCCHHHHHHHHHhcCCeEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhhc----cCCCEEEE
Confidence 2345567899999999999999999999999999999999887663 35789999
Q ss_pred eccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEec
Q 013241 180 KYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE 259 (447)
Q Consensus 180 efI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~ 259 (447)
|||+|++|++|++++|++|+++++++++|+++++++|+++++|++.++++++++|.+.+.++++++||+|++++||++|+
T Consensus 289 eyI~g~rei~V~vl~D~~G~vv~l~~rd~siqrr~qk~ie~aPa~~l~~~~~~~i~~~A~~~a~alGy~G~~~VEfl~d~ 368 (587)
T 3jrx_A 289 KLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQ 368 (587)
T ss_dssp ECCCSCEEEEEEEEECSSSCEEEEEEEEEEEESSSCEEEEEESCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECS
T ss_pred EecCCCcEEEEEEEEcCCCCEEEEeeeeccccccccceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999998
Q ss_pred CCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCCC--------------------CCccc--cccceeEEEEE
Q 013241 260 RGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLR--------------------YKQED--IVLQGHSIECR 317 (447)
Q Consensus 260 ~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l~--------------------~~~~~--~~~~g~ai~~r 317 (447)
+|++||+|||||+|++|+++|+++|+|++++++++++|++++ +.+.+ +.++||||+||
T Consensus 369 dG~~yflEINpRl~~e~~vte~~tGvdlv~~~lria~G~pL~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~ghaie~R 448 (587)
T 3jrx_A 369 DGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAAR 448 (587)
T ss_dssp SSCEEEEEEESSCCTTHHHHHHHHTCCHHHHHHHHHTTCCGGGCHHHHHHTTCCTTCCCCCCSSSCSSCCCCCSEEEEEE
T ss_pred CCCEEEEEEeCCCCCccceeccccCCCHHHHHHHHHCCCCcccchhcccccccccccccccccccccccCCCCceEEEEe
Confidence 899999999999999999999999999999999999999986 22222 56789999999
Q ss_pred EeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhhccEEec-ccc
Q 013241 318 INAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITG-VPT 396 (447)
Q Consensus 318 i~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G-~~t 396 (447)
||||||..+|.|++|+|+.+.+|.+++||....+..+..|+++||||+||||+||+||++|+++|.+||+++.|+| ++|
T Consensus 449 i~aedp~~~f~p~~G~i~~~~~~~~~~v~~~~~~~~~~~~~~~yd~~~~k~i~~g~~r~~a~~~~~~al~~~~i~g~~~t 528 (587)
T 3jrx_A 449 ITSENPDEGFKPSSGTVQELNFRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRT 528 (587)
T ss_dssp EEC----------CCCCEEEECSSCTTEEEEECCC----------CCEEEEEEEESSHHHHHHHHHHHHHHHHHSSTTSS
T ss_pred ecccCccccCCCCCcEEEEEEeCCCCceEEeccccccCCcCcccCcccceEEEEcCCHHHHHHHHHHHHhccEEeCCCCC
Confidence 9999999999999999999999999999865554444469999999999999999999999999999999999999 899
Q ss_pred CHHHHHHhcCCccccCCccccccccccchhccC
Q 013241 397 TIEYHKLILDVEDFKNGKVDTAFIPKHEQELQA 429 (447)
Q Consensus 397 n~~~~~~~l~~~~f~~g~~~t~~~~~~~~~~~~ 429 (447)
|++||++||.+|+|++|+++|+||+++++++..
T Consensus 529 n~~~~~~~~~~~~f~~g~~~t~~~~~~~~~~~~ 561 (587)
T 3jrx_A 529 TVEYLINLLETESFQNNDIDTGWLDYLIAEKVQ 561 (587)
T ss_dssp TTHHHHHHHTSHHHHTTCSCCGGGGC-------
T ss_pred cHHHHHHHhCChhhccCCcchhHHhHhhhhhcc
Confidence 999999999999999999999999999988753
No 2
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=100.00 E-value=1.9e-71 Score=587.50 Aligned_cols=352 Identities=38% Similarity=0.611 Sum_probs=284.4
Q ss_pred ccCCcEEEEecCcHHHHHHHHHHHHc---------CCCeeEEEeccC--hhhHHHHHhccccCH----------------
Q 013241 68 TCRQEKILVANRGEIAVRVIRTAHEM---------GIPCVAVYSTID--KDALHVKLADESVCI---------------- 120 (447)
Q Consensus 68 ~~~~~kvLianrgeia~ri~r~~~~l---------Gi~~vav~~~~d--k~~~~~~lad~~v~i---------------- 120 (447)
.+||+|||||||||+|+||+++|+++ |+.++++++..| +++++.++||+.+++
T Consensus 37 ~~~~~kvLianrGeia~riira~r~lg~e~~~~e~gi~~Vav~s~~D~~~~a~~~~~ADe~~~i~~~~~~~sy~d~~~ii 116 (540)
T 3glk_A 37 DRVIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELIV 116 (540)
T ss_dssp SCCCCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEECCCSSGGGTTTCHHHHH
T ss_pred cccccEEEEECChHHHHHHHHHHHHhccccccccCCcEEEEEEcCcccCcCChhHHhCCEEEEeCCCCcccccccHHHHH
Confidence 45799999999999999999999987 899999999766 889999999987654
Q ss_pred -------------------------------------------------------------------H------------
Q 013241 121 -------------------------------------------------------------------E------------ 121 (447)
Q Consensus 121 -------------------------------------------------------------------~------------ 121 (447)
.
T Consensus 117 ~~a~~~~~daI~pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~ll~~~GVPvp~~~~~~l~~~~~~~~~ 196 (540)
T 3glk_A 117 DIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDL 196 (540)
T ss_dssp HHHHHTTCSEEECCSSGGGGCTHHHHHHHHTTCEESSCCHHHHC---CHHHHHHHHHHTTCCBCCBTTTTCCCCCCCTTC
T ss_pred HHHHHhCCCEEEeCCCccccCHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHcCCCCCCccccccccccccccc
Confidence 2
Q ss_pred ----------------------HHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEe
Q 013241 122 ----------------------EAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLE 179 (447)
Q Consensus 122 ----------------------e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvE 179 (447)
++.++++++|||+||||..|+||+||++|++.+|+.++++.+..++ .+..++||
T Consensus 197 ~~~~~~~~~~~~~~~~~v~s~~ea~~~a~~igyPvVVKp~~ggGG~Gv~iv~~~~eL~~a~~~~~~~~----~~~~vlVE 272 (540)
T 3glk_A 197 QQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEI----PGSPIFLM 272 (540)
T ss_dssp ----CCCCCHHHHHHTSCCSHHHHHHHHHHHCSSEEEEETTCC----EEEECSTTTHHHHHHHHHHHS----TTCCEEEE
T ss_pred ccccccccccccccccCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhhc----cCCCEEEE
Confidence 2345667899999999999999999999999999999999887653 35789999
Q ss_pred eccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEec
Q 013241 180 KYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE 259 (447)
Q Consensus 180 efI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~ 259 (447)
|||+|++|++|++++|++|+++++++++|+++++++|.++++|++.++++.+++|.+.+.++++++||+|++++||++|+
T Consensus 273 e~I~g~rei~V~vl~d~~G~vv~l~~rd~s~qr~~~k~ie~~Pa~~l~~~~~~~l~~~a~~~~~alG~~G~~~VEf~~d~ 352 (540)
T 3glk_A 273 KLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQ 352 (540)
T ss_dssp ECCSSEEEEEEEEEECTTSCEEEEEEEEEEEC---CCSEEEESCTTSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET
T ss_pred EecCCCcEEEEEEEEcCCCCEEEEeceeeeeeecccceEEecCCCCCCHHHHHHHHHHHHHHHHHcCCccceEEEEEEcC
Confidence 99999999999999999999999999999999999999999999978999999999999999999999999999999998
Q ss_pred CCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCCC--------------------CCccc--cccceeEEEEE
Q 013241 260 RGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLR--------------------YKQED--IVLQGHSIECR 317 (447)
Q Consensus 260 ~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l~--------------------~~~~~--~~~~g~ai~~r 317 (447)
+|++||+|||||+|++|+++|+++|+|++++++++++|++++ +.+.+ +..+||||+||
T Consensus 353 dg~~~~lEiNpR~~~~~~vte~~tGvdl~~~~lr~a~G~pL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~aie~r 432 (540)
T 3glk_A 353 DGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAAR 432 (540)
T ss_dssp TSCEEEEEEECSCCTTHHHHHHHHTCCHHHHHHHHHTTCCGGGCHHHHHHTTCCSSCCSCCCSCCC----CCCSEEEEEE
T ss_pred CCCEEEEEEECCCCCcchhhHhHhCCCHHHHHHHHHCCCCcccccccccccccccccccccccccccccCCCceeEEEEE
Confidence 899999999999999999999999999999999999999986 12222 55789999999
Q ss_pred EeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhhccEEec-ccc
Q 013241 318 INAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITG-VPT 396 (447)
Q Consensus 318 i~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G-~~t 396 (447)
||||||..+|.|++|+|+.+.+|.++++|.......+..|+++||||+||||+||+||++|+++|.+||+++.|+| ++|
T Consensus 433 i~aedp~~~f~p~~G~i~~~~~~~~~~v~~~~~~~~~~~~~~~yd~~~~k~i~~g~~r~~a~~~~~~al~~~~i~g~~~t 512 (540)
T 3glk_A 433 ITSENPDEGFKPSSGTVQELNFRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRT 512 (540)
T ss_dssp EC------------CCEEECCCSSCCSEEEEEEC------------CEEEEEEEESSHHHHHHHHHHHHHHHTCC----H
T ss_pred EeccCCcccccCCceEEEEEEcCCCCcEEEEeccccCCCCCCccCcccceEEEEcCCHHHHHHHHHHHHhccEEecccCC
Confidence 9999999999999999999999999999976555444469999999999999999999999999999999999999 899
Q ss_pred CHHHHHHhcCCccccCCcccccccccc
Q 013241 397 TIEYHKLILDVEDFKNGKVDTAFIPKH 423 (447)
Q Consensus 397 n~~~~~~~l~~~~f~~g~~~t~~~~~~ 423 (447)
|++||++||.+|+|++|+++|+||+++
T Consensus 513 n~~~~~~~~~~~~f~~~~~~t~~~~~~ 539 (540)
T 3glk_A 513 TVEYLINLLETESFQNNDIDTGWLDYL 539 (540)
T ss_dssp HHHHHHHHHHSHHHHHTCC--------
T ss_pred cHHHHHHHhCChhhcCCCccchhhhhc
Confidence 999999999999999999999999975
No 3
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=100.00 E-value=4.3e-72 Score=606.58 Aligned_cols=362 Identities=50% Similarity=0.805 Sum_probs=334.7
Q ss_pred cCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH----------------------------
Q 013241 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI---------------------------- 120 (447)
Q Consensus 69 ~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i---------------------------- 120 (447)
.||+||||+|||++|++++++|+++|+.++++++..|..+.+.+++|+.+.+
T Consensus 26 ~m~~kILI~g~Geia~~iiraar~lGi~~vav~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~ 105 (675)
T 3u9t_A 26 RSIQRLLVANRGEIACRVMRSARALGIGSVAVHSDIDRHARHVAEADIAVDLGGAKPADSYLRGDRIIAAALASGAQAIH 105 (675)
T ss_dssp CCCSEEEECCCHHHHHHHHHHHHHHTCEEEEEECSGGGGCHHHHTCSEEEECCCSSGGGTTTCHHHHHHHHHHTTCSEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCchhHhhCCEEEEcCCCccccCccCHHHHHHHHHHhCcCEEE
Confidence 3799999999999999999999999999999999999999999999987642
Q ss_pred --------------------------------------------------------------HHHHHHhhhhCCcEEEEe
Q 013241 121 --------------------------------------------------------------EEAVKLADELGFPVMIKA 138 (447)
Q Consensus 121 --------------------------------------------------------------~e~~~~~~~ig~PvVvKP 138 (447)
+++.++++++|||+||||
T Consensus 106 pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~GVpvpp~~~~~~~s~~e~~~~a~~igyPvvvKp 185 (675)
T 3u9t_A 106 PGYGFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYHGEAQDLETFRREAGRIGYPVLLKA 185 (675)
T ss_dssp CCSSTTTTCHHHHHHHHTTTCEESSCCHHHHHHHTSHHHHHHHHHHTTCCBCCCCCSCCCCTTHHHHHHHHSCSSBCCBC
T ss_pred eCCcccccCHHHHHHHHHcCCceeCCCHHHHHHhchHHHHHHHHHHcCcCcCCccccCCCCHHHHHHHHHhCCCcEEEEE
Confidence 678888899999999999
Q ss_pred CCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceee
Q 013241 139 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL 218 (447)
Q Consensus 139 ~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~ 218 (447)
..|+||+||++|++.+|+.++++.+..++...|+++.++|||||+|++|+++++++|++|+++++++++|++++++++++
T Consensus 186 ~~G~Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~reiev~v~~d~~G~vv~l~~rd~s~qr~~qk~i 265 (675)
T 3u9t_A 186 AAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKPRHVEIQVFADRHGHCLYLNERDCSIQRRHQKVV 265 (675)
T ss_dssp CC------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSCBCEEEEEEECSSSCEEEEEEEECCCBSSSSBCE
T ss_pred CCCCCCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCCcEEEEEEEEcCCCCEEEEeccccceeeccceEE
Confidence 99999999999999999999999888777778888999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCC
Q 013241 219 EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGG 298 (447)
Q Consensus 219 ~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~ 298 (447)
+++|++.++++.+++|.+.+.++++++||+|++++||+++++|++||||||||++++|+++|+++|+|++++++++++|+
T Consensus 266 e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~dG~~~~iEiNpR~~~~~~~te~~tGvdl~~~~l~~a~G~ 345 (675)
T 3u9t_A 266 EEAPAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDERGQFFFMEMNTRLQVEHPVTEAITGLDLVAWQIRVARGE 345 (675)
T ss_dssp EEESCSSCCHHHHHHHHHHHHHHHHHTTCCSEEEEECCBCTTSCBCBCEEESSCCTTHHHHHHTTTCCHHHHHHHHHTTC
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHcCCccceEEEEEEcCCCCEEEEeccccccCCchhhhhhcCCCHHHHHHHHHCCC
Confidence 99999989999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecC-CCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHH
Q 013241 299 KLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPA-GGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREK 377 (447)
Q Consensus 299 ~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~-~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~e 377 (447)
++++.+.++..+||+++||+|+|||..+|.|++|+|..+..| .+++||+|+++++|+.|+++|||++||||++|+|+++
T Consensus 346 ~l~~~~~~~~~~g~ai~~ri~aedp~~~f~P~~G~l~~~~~p~~~~gvr~d~~~~~G~~v~~~~ds~la~vi~~g~~r~~ 425 (675)
T 3u9t_A 346 ALPLTQEQVPLNGHAIEVRLYAEDPEGDFLPASGRLMLYREAAAGPGRRVDSGVREGDEVSPFYDPMLAKLIAWGETREE 425 (675)
T ss_dssp CCSCCTTTCCCCSEEEEEEEESCCTTTTSCCCCCBCSEEECCCCCTTEEEEESCCTTCBCCTTSCCEEEEEEEEESSHHH
T ss_pred CCCCCccccccCcceeEEEEEeccCcccccCCCCEEEEEECCCCCCCEEEEecccCCCEeCCCCCCceEEEEEEeCCHHH
Confidence 999888888889999999999999999999999999999888 7899999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccEEeccccCHHHHHHhcCCccccCCccccccccccchhccCC
Q 013241 378 AIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQAP 430 (447)
Q Consensus 378 A~~~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~~~~~~~~ 430 (447)
|++++.++|+++.|+|++||++||++||.+|+|++|+++|+||+++++++.++
T Consensus 426 a~~~~~~al~~~~i~g~~tn~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 478 (675)
T 3u9t_A 426 ARQRLLAMLAETSVGGLRTNLAFLRRILGHPAFAAAELDTGFIARHQDDLLPA 478 (675)
T ss_dssp HHHHHHHHHHTCEEESSCCTHHHHHHHHTCHHHHTTCCCTTHHHHTHHHHSCC
T ss_pred HHHHHHHHhhcEEEECccCCHHHHHHHhCCHHHhCCCcccchhhhcchhhcCC
Confidence 99999999999999999999999999999999999999999999999888654
No 4
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=100.00 E-value=3.7e-72 Score=607.65 Aligned_cols=359 Identities=51% Similarity=0.831 Sum_probs=285.8
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH-----------------------------
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------------------------- 120 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------------------------- 120 (447)
||+||||+||||+|++++++|+++|+.++++++..|..++|..++|+.+.+
T Consensus 1 m~~kiLIanrGeia~riiraar~lGi~~vav~sd~d~~a~~~~~aD~~~~i~p~~~~~syld~~~i~~~a~~~~~daI~p 80 (681)
T 3n6r_A 1 MFNKILIANRGEIACRVIKTARKMGISTVAIYSDADKQALHVQMADEAVHIGPPPANQSYIVIDKVMAAIRATGAQAVHP 80 (681)
T ss_dssp -CCCBCBSCCHHHHHHHHHHHGGGSCCBCCEECSTTSSCHHHHHSSCCEECSSSSGGGTTSCHHHHHHHHHHTCCSCCBC
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEEcCCCCCChhHHhCCEEEEcCCCCcccCccCHHHHHHHHHHhCcCEEEE
Confidence 689999999999999999999999999999999999999999999987652
Q ss_pred -------------------------------------------------------------HHHHHHhhhhCCcEEEEeC
Q 013241 121 -------------------------------------------------------------EEAVKLADELGFPVMIKAT 139 (447)
Q Consensus 121 -------------------------------------------------------------~e~~~~~~~ig~PvVvKP~ 139 (447)
+++.++++++|||+||||.
T Consensus 81 g~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~dK~~~k~~l~~~GVPvpp~~~~~~~s~~e~~~~a~~igyPvVvKp~ 160 (681)
T 3n6r_A 81 GYGFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQIGYPVMIKAS 160 (681)
T ss_dssp CSSSSTTCHHHHHHHHTTTCCCSSSCHHHHHHTTSHHHHHHHHHTTTCCCCCC---------------------------
T ss_pred CCCccccCHHHHHHHHHcCCceECCCHHHHHHhCCHHHHHHHHHHcCcCcCCccccCcCCHHHHHHHHHhcCCcEEEEEC
Confidence 5666777889999999999
Q ss_pred CCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeE
Q 013241 140 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE 219 (447)
Q Consensus 140 ~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~ 219 (447)
.|+||+||++|++.+|+.++++.+.+++.+.|+++.++|||||+|++|+++++++|++|+++++++++|+++++++++++
T Consensus 161 ~ggggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~rei~V~v~~d~~G~vv~l~~rd~s~qr~~~k~~e 240 (681)
T 3n6r_A 161 AGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDSHGNGIYLGERECSIQRRNQKVVE 240 (681)
T ss_dssp ------------------------------------------CCSCEEEEEEEECCSSSCCEEEEEEECCCEETTEECEE
T ss_pred CCCCCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCCcEEEEEEEEeCCCCEEEEeeeecceeccCccEEE
Confidence 99999999999999999999999998888888889999999999989999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCC
Q 013241 220 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 299 (447)
Q Consensus 220 ~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~ 299 (447)
++|++.++++++++|.+.+.++++++||+|++++||+++++|++||||||||+|++|+++|+++|+|++++++++++|++
T Consensus 241 ~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~d~dg~~~~lEiNpR~~~~~~~te~~tGvdl~~~~l~~a~G~~ 320 (681)
T 3n6r_A 241 EAPSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFIVDGQKNFYFLEMNTRLQVEHPVTELITGVDLVEQMIRVAAGEP 320 (681)
T ss_dssp EESCSSCCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECTTSCCCCCEEECSCCTTHHHHHHHHTCCHHHHHHHHHTSCC
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEeCCCCEEEEecccccCCCcHHhHHHhCCCHHHHHHHHHCCCC
Confidence 99999899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCC-C-------------------CcEEEeeeecCCcccCC
Q 013241 300 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAG-G-------------------PFVRMDSHVYPDYVVPP 359 (447)
Q Consensus 300 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~-~-------------------~~vr~d~~~~~G~~v~~ 359 (447)
+++.+.++...||++++|+|+|||..+|.|++|+|..+.+|. + ++||+|+++++|+.|++
T Consensus 321 l~~~~~~~~~~g~ai~~ri~aedp~~~f~p~~G~i~~~~~p~~~~~~~~~~~~~w~~d~~~~~~~vr~d~~~~~g~~v~~ 400 (681)
T 3n6r_A 321 LSITQGDVKLTGWAIENRLYAEDPYRGFLPSIGRLTRYRPPAETAAGPLLVNGKWQGDAPSGEAAVRNDTGVYEGGEISM 400 (681)
T ss_dssp CSSCTTTCCCCSEEEEEEEESEEGGGTTEECCEECSCEECCCC--------------------CCEEEEESCCTTCEECT
T ss_pred CCCCccccceeEEEEEEEEecCCcccccCCCCcEEEEEECCCCCcccccccccccccccccCCCcEEEEccccCCCccCC
Confidence 999988888999999999999999999999999999998776 3 48999999999999999
Q ss_pred CCCccceEEEEEcCCHHHHHHHHHHhhhccEEeccccCHHHHHHhcCCccccCCccccccccccchhcc
Q 013241 360 SYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQ 428 (447)
Q Consensus 360 ~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~~~~~~ 428 (447)
+||||+||||+||+||++|+++|.++|+++.|+|++||++||++||.||+|++|+++|+||++++.++.
T Consensus 401 ~yd~~iak~i~~g~~r~~a~~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~ 469 (681)
T 3n6r_A 401 YYDPMIAKLCTWAPTRAAAIEAMRIALDSFEVEGIGHNLPFLSAVMDHPKFISGDMTTAFIAEEYPEGF 469 (681)
T ss_dssp TSCCEEEEEEEEESSHHHHHHHHHHHHHHCEECSSCCSHHHHHHHHHCHHHHHCCCCSSHHHHHCTTSC
T ss_pred CCCCceeEEEEEcCCHHHHHHHHHHHHhcCEEECccCCHHHHHHHhCCHhhccCCcccchhhhcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999986653
No 5
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=100.00 E-value=1.4e-67 Score=548.23 Aligned_cols=354 Identities=54% Similarity=0.920 Sum_probs=337.3
Q ss_pred ccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH---------------------------
Q 013241 68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI--------------------------- 120 (447)
Q Consensus 68 ~~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i--------------------------- 120 (447)
..||+||||+|||++|++++++|+++|+.++.+++..|..+++..++|+.+.+
T Consensus 3 ~m~~~kiLI~g~g~~a~~i~~aa~~~G~~~v~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~~~~~~d~i 82 (446)
T 3ouz_A 3 AMEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLKYADASICIGKARSSESYLNIPAIIAAAEIAEADAI 82 (446)
T ss_dssp TTCCCEEEECCCHHHHHHHHHHHHHTTCEEEEEEEGGGTTCTHHHHSSEEEEEECCTTTTGGGCHHHHHHHHHHHTCSEE
T ss_pred ccccceEEEECCCHHHHHHHHHHHHcCCEEEEEEcCcccccchHhhCCEEEEcCCCCccccccCHHHHHHHHHHhCcCEE
Confidence 45789999999999999999999999999999999988888999888886631
Q ss_pred ---------------------------------------------------------------HHHHHHhhhhCCcEEEE
Q 013241 121 ---------------------------------------------------------------EEAVKLADELGFPVMIK 137 (447)
Q Consensus 121 ---------------------------------------------------------------~e~~~~~~~ig~PvVvK 137 (447)
+++.++++++|||+|||
T Consensus 83 ~p~~g~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~~~~~~~~e~~~~~~~~g~PvvvK 162 (446)
T 3ouz_A 83 FPGYGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILK 162 (446)
T ss_dssp ECCSSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSSCCSHHHHHHHHHHHCSSEEEE
T ss_pred EECCcccccCHHHHHHHHHCCCceECcCHHHHHHhCCHHHHHHHHHHcCCCcCCCcccCCCCHHHHHHHHHHhCCCEEEE
Confidence 67778888999999999
Q ss_pred eCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeecccccccee
Q 013241 138 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKL 217 (447)
Q Consensus 138 P~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~ 217 (447)
|..|+||+||++|++.+|+.++++.+..++...|++..+++||||+|++|+++++++|++|+++++++++|++++++++.
T Consensus 163 p~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~ 242 (446)
T 3ouz_A 163 AAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQKL 242 (446)
T ss_dssp ETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEE
T ss_pred ECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEEcCCCCEEEEeeceeeeeecCceE
Confidence 99999999999999999999999999988888888899999999999899999999999999999999999999999999
Q ss_pred eEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcC
Q 013241 218 LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMG 297 (447)
Q Consensus 218 ~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G 297 (447)
.+.+|++.++++..+++.+.+.++++++||+|++++||+++++|++||+|||||+++++++++.++|+|++++++++++|
T Consensus 243 ~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~ve~~~~~~g~~~~iEiNpR~~g~~~~~~~~~G~dl~~~~~~~~~G 322 (446)
T 3ouz_A 243 IEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDKNLDFYFIEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEG 322 (446)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCTTHHHHHHHHCCCHHHHHHHHHTT
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEeCCCCEEEEEeECCCCCcceeeeeeeCCCHHHHHHHHHCC
Confidence 99999987999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CCCCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHH
Q 013241 298 GKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREK 377 (447)
Q Consensus 298 ~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~e 377 (447)
++++ .+.++..+||++++|++||+| ..|.|++|+++.+..|+++++|+++++++|+.|+++|||++|+||++|+|+++
T Consensus 323 ~~l~-~~~~~~~~g~ai~~ri~ae~~-~~~~p~~G~i~~~~~p~~~~vr~~~~~~~G~~v~~~~d~~~~~vi~~g~~~~~ 400 (446)
T 3ouz_A 323 YALP-SQESIKLNGHSIECRITAEDS-KTFLPSPGKITKYIPPAGRNVRMESHCYQDYSVPAYYDSMIGKLVVWAEDRNK 400 (446)
T ss_dssp CCCC-CGGGCCCCSEEEEEEEESBCT-TTCCBCCEECSEEECCCSTTEEEEECCCTTCEECTTTCCEEEEEEEEESSHHH
T ss_pred CCCC-cCCCCCcceEEEEEEeeccCC-CccCCCCcEEeEEecCCCCCEEEEcccccCCEeCCccCCcceEEEEEcCCHHH
Confidence 9998 666677899999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccEEeccccCHHHHHHhcCCccccCCcccccccccc
Q 013241 378 AIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKH 423 (447)
Q Consensus 378 A~~~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~ 423 (447)
|++++.++++++.|+|++||++||++||.+|+|++|+++|+||++|
T Consensus 401 a~~~~~~al~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (446)
T 3ouz_A 401 AIAKMKVALDELLISGIKTTKDFHLSMMENPDFINNNYDTNYLARH 446 (446)
T ss_dssp HHHHHHHHHHHCEEESSCCTHHHHHHHHTCHHHHTTCCCTTHHHHC
T ss_pred HHHHHHHHHhhCEEeCccCCHHHHHHHhCChhhccCCccccccccC
Confidence 9999999999999999999999999999999999999999999874
No 6
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=100.00 E-value=8.3e-67 Score=591.05 Aligned_cols=358 Identities=46% Similarity=0.760 Sum_probs=325.6
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH-----------------------------
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------------------------- 120 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------------------------- 120 (447)
+|+||||+|||++|++++|+|+++|+.++++++..|..++|..++|+.+++
T Consensus 3 ~~kkVLIagrGeia~riiraa~elGi~vVav~s~~d~~s~~~~~ADe~~~ig~~~~~~~syld~~~Ii~~a~~~~~DaI~ 82 (1150)
T 3hbl_A 3 QIKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIH 82 (1150)
T ss_dssp CCCEEEECCCHHHHHHHHHHHHHTTCEEEEEECGGGTTCGGGGTSSEEEECCTTSCTTGGGTCHHHHHHHHHHTTCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCcccchhhhhcceeeecCCCCCccccccCHHHHHHHHHHhCCCEEE
Confidence 589999999999999999999999999999999999999998888876621
Q ss_pred --------------------------------------------------------------HHHHHHhhhhCCcEEEEe
Q 013241 121 --------------------------------------------------------------EEAVKLADELGFPVMIKA 138 (447)
Q Consensus 121 --------------------------------------------------------------~e~~~~~~~ig~PvVvKP 138 (447)
+++.++++++|||+||||
T Consensus 83 pg~gflsE~~~~a~~le~~Gi~~iGp~~eai~~~~DK~~~r~ll~~aGIPvpp~~~~~v~s~eea~~~a~~iGyPvVVKP 162 (1150)
T 3hbl_A 83 PGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKA 162 (1150)
T ss_dssp CTTTTSTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSCBCSSSTTTTTGGGTCSSEEEEC
T ss_pred ECCCcccccHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 455666778999999999
Q ss_pred CCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceee
Q 013241 139 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL 218 (447)
Q Consensus 139 ~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~ 218 (447)
..|+||+||++|++.+|+.++++.+.+++...|+++.++|||||+|++|+++++++|++|+++++++++|++++++++..
T Consensus 163 ~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~reieV~vl~d~~G~vv~l~er~~s~qr~~~k~~ 242 (1150)
T 3hbl_A 163 TSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVV 242 (1150)
T ss_dssp CC-------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSCEEEEEEEEECSSSCEEEEEEEEEEEESSSCEEE
T ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCCcEEEEEEEEeCCCCEEEEEeeccceeccCceeE
Confidence 99999999999999999999998877666566778899999999998999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCC
Q 013241 219 EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGG 298 (447)
Q Consensus 219 ~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~ 298 (447)
+.+|++.++++.+++|.+.+.++++++||+|++++||++|++ ++||||||||+|++|+++|+++|+|++++++++++|+
T Consensus 243 e~~Pa~~l~~~~~~~l~~~a~~~~~alG~~G~~~vEflvd~d-~~y~iEINpR~~g~~~vte~~tGvDlv~~~i~ia~G~ 321 (1150)
T 3hbl_A 243 EVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGD-EFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGA 321 (1150)
T ss_dssp EESSCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETT-EEEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTC
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECC-eEEEEEEeCCCCCCcceeehhcCCCHHHHHHHHHCCC
Confidence 999998899999999999999999999999999999999987 6999999999999999999999999999999999999
Q ss_pred CCCC------CccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeee-ecCCcccCCCCCccceEEEEE
Q 013241 299 KLRY------KQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSH-VYPDYVVPPSYDSLLGKLIVW 371 (447)
Q Consensus 299 ~l~~------~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~-~~~G~~v~~~~ds~lg~vi~~ 371 (447)
+++. .+.++..+||+++||+|+|||..+|.|++|+|+.+..|+++|+|+|++ ++.|+.|+++||||+||||++
T Consensus 322 ~L~~~~~~~~~q~~i~~~G~ai~~Ri~aedp~~~f~P~~G~i~~~~~p~~~gvr~d~~~~~~G~~v~~~yds~lakvi~~ 401 (1150)
T 3hbl_A 322 DLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTH 401 (1150)
T ss_dssp CTTSTTTCCCCGGGCCCCSEEEEEEECSEEGGGTSEECCCCCCEEECCCCTTEEEEESSCSSSCCCCTTSCCCSEEEEEE
T ss_pred CCCccccccccccccccceEEEEEEEeccCCccccCCCCceEEEEEcCCCCceeccccccccCCEeCCcCCCceeEEEEE
Confidence 9975 566778899999999999999999999999999999999999999986 789999999999999999999
Q ss_pred cCCHHHHHHHHHHhhhccEEeccccCHHHHHHhcCCccccCCccccccccccchhcc
Q 013241 372 APTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQ 428 (447)
Q Consensus 372 g~~~~eA~~~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~~~~~~ 428 (447)
|+|+++|+++|.+||++++|+|++||++||+++|.||+|++|+++|+||+++.+.+.
T Consensus 402 g~~~~eA~~~~~~al~~~~i~G~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~ 458 (1150)
T 3hbl_A 402 AISFKQAEEKMVRSLREMRIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFD 458 (1150)
T ss_dssp ESSHHHHHHHHHHHHHHCEEESSCCSHHHHHHHHHCHHHHHSCCCTTHHHHCGGGGC
T ss_pred eCCHHHHHHHHHHHHhceEEeCccCCHHHHHHHhCCHHHcCCCcccchhhCCHhhcc
Confidence 999999999999999999999999999999999999999999999999999877665
No 7
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=100.00 E-value=1.1e-62 Score=558.49 Aligned_cols=355 Identities=41% Similarity=0.703 Sum_probs=278.3
Q ss_pred ccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH---------------------------
Q 013241 68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI--------------------------- 120 (447)
Q Consensus 68 ~~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i--------------------------- 120 (447)
.+||+||||+|||++|++++++|+++|+.++++++..|..+.+..++|+.+.+
T Consensus 28 ~~m~kkILI~grGeia~~iiraar~lGi~vVaV~s~~d~~a~~~~~ADe~~~i~p~~~~~syld~~~Il~~a~~~~iDaI 107 (1236)
T 3va7_A 28 KKPFETVLIANRGEIAVRIMKTLKRMGIKSVAVYSDPDKYSQHVTDADFSVALHGRTAAETYLDIDKIINAAKKTGAQAI 107 (1236)
T ss_dssp CCSCSEEEECCCHHHHHHHHHHHHHHTCEEEEEECSGGGGCHHHHHSSEEEECCCSSTTTTTTCHHHHHHHHHHTTCSEE
T ss_pred cCCCCEEEEEcCCHHHHHHHHHHHHCCCEEEEEEcCCCcCchhhhhCCEEEEeCCCcccccccCHHHHHHHHHHhCCCEE
Confidence 45799999999999999999999999999999999999999999999887642
Q ss_pred --------------------------------------------------------------HHHHHHhhhhCCcEEEEe
Q 013241 121 --------------------------------------------------------------EEAVKLADELGFPVMIKA 138 (447)
Q Consensus 121 --------------------------------------------------------------~e~~~~~~~ig~PvVvKP 138 (447)
+++.++++++|||+||||
T Consensus 108 ~pg~g~lsEn~~~a~~le~~Gi~~iGps~eai~~~~DK~~ak~ll~~aGIPvpp~~~~v~s~eea~~~a~~iGyPvVVKP 187 (1236)
T 3va7_A 108 IPGYGFLSENADFSDRCSQENIVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGSGLIKDAKEAKEVAKKLEYPVMVKS 187 (1236)
T ss_dssp ECCSSGGGGCHHHHHHHHTTTCEESSCCHHHHHHHHSTTHHHHHHHHTTCCCCC--------------------------
T ss_pred EECCccccccHHHHHHHHHCCCCeeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEecCCHHHHHHHHHHcCCCEEEEe
Confidence 566677888999999999
Q ss_pred CCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceee
Q 013241 139 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL 218 (447)
Q Consensus 139 ~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~ 218 (447)
..|+||+||++|++.+|+.++++.+..++.+.|++..++|||||+|++|+++++++|++|+++++++++|+++++++++.
T Consensus 188 ~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G~rEisV~vl~Dg~g~vv~l~~rd~s~qr~~~k~~ 267 (1236)
T 3va7_A 188 TAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNARHVEIQMMGDGFGKAIAIGERDCSLQRRNQKVI 267 (1236)
T ss_dssp ---------------------------------------------CCEEEEEEEEEESSSCEEEEEEEEEEEEETTEEEE
T ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCCCeEEEEEEEecCCceEEEEeeeeeeeeecCcceE
Confidence 99999999999999999999999988877777888899999999998999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecC-CCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcC
Q 013241 219 EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMG 297 (447)
Q Consensus 219 ~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~-G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G 297 (447)
+++|++.++++++++|.+.+.++++++||+|++++||+++++ |++||||||||++++|+++++++|+|++++++++++|
T Consensus 268 e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~VEfivd~d~g~~y~iEINpRl~g~~~~te~vtGvDlv~~~l~~a~G 347 (1236)
T 3va7_A 268 EETPAPNLPEATRAKMRAASERLGSLLKYKCAGTVEFIYDEQRDEFYFLEVNARLQVEHPITEMVTGLDLVEWMLRIAAN 347 (1236)
T ss_dssp EEESCSSCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTT
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCcEEEEEEECCCCCccHHHHHHHCCCHHHHHHHHHCC
Confidence 999998899999999999999999999999999999999964 7899999999999999999999999999999999999
Q ss_pred CCCCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHH
Q 013241 298 GKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREK 377 (447)
Q Consensus 298 ~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~e 377 (447)
+++++.+.++..+||++++|+|+|||..+|.|++|+++.+..|.+ +|++.++++|+.|+++||+++|+||++|+|+++
T Consensus 348 ~~l~~~~~~~~~~g~Ai~~riyaedp~~~f~p~~G~i~~~~~p~g--vrvd~~v~~G~~V~~~yds~la~vi~~g~~r~e 425 (1236)
T 3va7_A 348 DSPDFDNTKIEVSGASIEARLYAENPVKDFRPSPGQLTSVSFPSW--ARVDTWVKKGTNVSAEYDPTLAKIIVHGKDRND 425 (1236)
T ss_dssp CCCCGGGCCCCCCSEEEEEEEESEETTTTTEECCEECCEEECCTT--SEEEECCCTTCEECSSSCCEEEEEEEEESSHHH
T ss_pred CCCCCccccccccceEEEEEEecCCcccccCCCCceEEEEEcCCc--cEecccccCCCEeCCCCCCceEEEEEEeCCHHH
Confidence 999887777778999999999999999999999999999887754 899999999999999999999999999999999
Q ss_pred HHHHHHHhhhccEEeccccCHHHHHHhcCCccccCCccccccccccc
Q 013241 378 AIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHE 424 (447)
Q Consensus 378 A~~~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~~ 424 (447)
|++++++++++++|+|++||++||+++|.||+|++|+++|+||+++.
T Consensus 426 A~~~~~~al~~~~i~G~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~ 472 (1236)
T 3va7_A 426 AIMKLNQALNETAVYGCITNIDYLRSIASSKMFKEAKVATKVLDSFD 472 (1236)
T ss_dssp HHHHHHHHHHTCEEESSCCSHHHHHHHHHCHHHHHTCCCTTGGGGCC
T ss_pred HHHHHHHHhhCEEEeCcccCHHHHHHHhCCHHHhCCCCcchhhhhcC
Confidence 99999999999999999999999999999999999999999999873
No 8
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=100.00 E-value=2.8e-61 Score=547.08 Aligned_cols=359 Identities=48% Similarity=0.776 Sum_probs=278.6
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccC-------------------H----------
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVC-------------------I---------- 120 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~-------------------i---------- 120 (447)
||+|||||||||+|++++++|+++|+.++++++..|..++|..++|+.+. +
T Consensus 13 ~~~~~lianrGeia~riiraa~elGi~vvav~s~~d~~a~~~~~ADe~~~i~~~~~~~~~~~~~~~yld~~~I~~~a~~~ 92 (1165)
T 2qf7_A 13 PISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKLS 92 (1165)
T ss_dssp CCCEEEECCCHHHHHHHHHHHHHTTCEEEEEECGGGTTCHHHHSSSSEEECSCSTTSSSCCCTTHHHHCHHHHHHHHHHH
T ss_pred cceEEEEcCCcHHHHHHHHHHHHcCCEEEEEECCCcccchhHHhCCEEEEcCCcccccccCCccccccCHHHHHHHHHHh
Confidence 69999999999999999999999999999999988887777777766410 1
Q ss_pred --------------------------------------------------------------------HHHHHHhhhhCC
Q 013241 121 --------------------------------------------------------------------EEAVKLADELGF 132 (447)
Q Consensus 121 --------------------------------------------------------------------~e~~~~~~~ig~ 132 (447)
+++.++++++||
T Consensus 93 ~iD~V~pg~g~lsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~GIPvp~~~~~~v~s~eea~~~a~~igy 172 (1165)
T 2qf7_A 93 GADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGY 172 (1165)
T ss_dssp TCSEEECCSSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBC----------------------
T ss_pred CCCEEEECCCchhcCHHHHHHHHHcCCceECCCHHHHHHHCCHHHHHHHHHHcCCCCCCeeCcCCCCHHHHHHHHHhcCC
Confidence 345556678899
Q ss_pred cEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeecccc
Q 013241 133 PVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQR 212 (447)
Q Consensus 133 PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~ 212 (447)
|+||||..|+||+||++|++.+|+.++++.+..++...|++..++|||||+|++|+++++++|++|+++++++++|++++
T Consensus 173 PvVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~gg~EisV~vl~D~~G~vv~l~~r~~s~~r 252 (1165)
T 2qf7_A 173 PVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQR 252 (1165)
T ss_dssp -----------------------------------------------CCCSSEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred CEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCcEEEEEEEEcCCCcEEEEEeeccccee
Confidence 99999999999999999999999999999988877777888899999999977999999999999999999999999999
Q ss_pred ccceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEe-cCCCEEEEEEeccCCCccchhhhhcCCCHHHHH
Q 013241 213 RNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQ 291 (447)
Q Consensus 213 ~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d-~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~ 291 (447)
++++..+.+|++.++++.+++|.+.+.++++++||+|++++||+++ ++|++||||||||++++|+++++++|+|+++++
T Consensus 253 ~~~~~~e~~Pa~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~vd~~dg~~~~iEiNpR~~~~~~vte~~tGiDl~~~~ 332 (1165)
T 2qf7_A 253 RNQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTGKFYFIEVNPRIQVEHTVTEVVTGIDIVKAQ 332 (1165)
T ss_dssp TTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTTEEEEEEEECSCCTTHHHHHHHHCCCHHHHH
T ss_pred cccceEEecccccCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEECCCCCEEEEEEEcCCCCCchhhhhhhCCCHHHHH
Confidence 9999999999988999999999999999999999999999999999 888999999999999999999999999999999
Q ss_pred HHHHcCCCCCC------CccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeee-cCCcccCCCCCcc
Q 013241 292 IHVAMGGKLRY------KQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHV-YPDYVVPPSYDSL 364 (447)
Q Consensus 292 i~~a~G~~l~~------~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~-~~G~~v~~~~ds~ 364 (447)
+++++|.+++. .+.++..+||+++||+++|+|..+|.|++|+|+.+..|.++++|++.++ ++|+.|+++||++
T Consensus 333 i~~a~G~~l~~~~~g~p~q~~~~~~g~Ai~~ri~ae~P~~~f~p~~G~I~~~~~~~~~gvrvd~g~~~~G~~v~~~~d~~ 412 (1165)
T 2qf7_A 333 IHILDGAAIGTPQSGVPNQEDIRLNGHALQCRVTTEDPEHNFIPDYGRITAYRSASGFGIRLDGGTSYSGAIITRYYDPL 412 (1165)
T ss_dssp HHHHTTCCTTSGGGTCCCGGGCCCCSEEEEEEEESEETTTTTEECCEECCEEECCCCTTEEEECCSCCTTCEECSSSCCE
T ss_pred HHHHcCCCccccccccccccccccCcEEEEEEEEecCCccCcCCCCcEEEEEecCCCCceEeeeccCCCCCEeCCCCCCc
Confidence 99999998863 3445567899999999999999999999999999988888899999876 7899999999999
Q ss_pred ceEEEEEcCCHHHHHHHHHHhhhccEEeccccCHHHHHHhcCCccccCCccccccccccchhcc
Q 013241 365 LGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQ 428 (447)
Q Consensus 365 lg~vi~~g~~~~eA~~~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~~~~~~ 428 (447)
+|+|+++|+|+++|++++++++++++|+|++||++||+++|.||+|++|+++|+||+++.+.+.
T Consensus 413 l~~vi~~g~t~~eA~~~~~~al~~i~i~G~~tni~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~ 476 (1165)
T 2qf7_A 413 LVKVTAWAPNPLEAISRMDRALREFRIRGVATNLTFLEAIIGHPKFRDNSYTTRFIDTTPELFQ 476 (1165)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHCEEESSCCSHHHHHHHHTSHHHHTTCCCTTTTTTCGGGGC
T ss_pred eEEEEEEeCCHHHHHHHHHHHhhcEEEecccCCHHHHHHHhcCHHhhcCCccchhhhcChhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999866553
No 9
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=100.00 E-value=1e-57 Score=474.46 Aligned_cols=357 Identities=54% Similarity=0.932 Sum_probs=324.7
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccC------------H------------------
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVC------------I------------------ 120 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~------------i------------------ 120 (447)
|+||||+|+|+++.+++++|+++|+.++.+++..|....+..++|+.+. .
T Consensus 1 ~k~ilI~g~g~~~~~i~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~~~~~~d~v~~~ 80 (451)
T 2vpq_A 1 MKKVLIANRGEIAVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTLSKDSYLNIPNILSIATSTGCDGVHPG 80 (451)
T ss_dssp -CEEEECCCHHHHHHHHHHHHHTTCEEEEEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHHHHTTCSEEECC
T ss_pred CceEEEeCCCHHHHHHHHHHHHcCCEEEEEecccccccchhhhCCEEEEcCCCCccccccCHHHHHHHHHHcCCCEEEEC
Confidence 5899999999999999999999999999988766655555555543221 0
Q ss_pred ------------------------------------------------------------HHHHHHhhhhCCcEEEEeCC
Q 013241 121 ------------------------------------------------------------EEAVKLADELGFPVMIKATA 140 (447)
Q Consensus 121 ------------------------------------------------------------~e~~~~~~~ig~PvVvKP~~ 140 (447)
+++.+++++++||+||||..
T Consensus 81 ~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~g~PvvvKp~~ 160 (451)
T 2vpq_A 81 YGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPVIIKATA 160 (451)
T ss_dssp SSTTTTCHHHHHHHHTTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSCBSCHHHHHHHHHHHCSSEEEEETT
T ss_pred CCccccCHHHHHHHHHcCCeEECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccCcCCHHHHHHHHHhcCCcEEEEECC
Confidence 56677778899999999999
Q ss_pred CCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEe
Q 013241 141 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE 220 (447)
Q Consensus 141 g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~ 220 (447)
|+||+|+++|++.+|+.++++.+..++...|++..++|||||+|++|++++++++++|+++++++++|++++++++..+.
T Consensus 161 g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 240 (451)
T 2vpq_A 161 GGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSYGNVIHLGERDCTIQRRMQKLVEE 240 (451)
T ss_dssp CCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSEEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEE
T ss_pred CCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCeEEEEEEEEcCCCCEEEEeccccchhccccceEEE
Confidence 99999999999999999999988877666677789999999999789999999998899999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEe-cCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCC
Q 013241 221 APSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 299 (447)
Q Consensus 221 ~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d-~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~ 299 (447)
+|++.++++..+++.+.+.++++++||.|++++||+++ ++|++||+|+|||+++++++++.++|+|++++++++++|.+
T Consensus 241 ~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~~g~~~viEiN~R~~~~~~~~~~~~g~dl~~~~~~~~~G~~ 320 (451)
T 2vpq_A 241 APSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMNTRIQVEHPVTEMVTGIDLVKLQLQVAMGDV 320 (451)
T ss_dssp ESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTTEEEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCCEEEEEeeCCCCCceehhhHHhCCCHHHHHHHHHCCCC
Confidence 99988999999999999999999999999999999999 88999999999999999999999999999999999999999
Q ss_pred CCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHH
Q 013241 300 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI 379 (447)
Q Consensus 300 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~ 379 (447)
++..+.++...++++++|+++++|..+|.|.+|.+..+..|.+++++++.+++.|+.+++.|++++|+|+++|+|+++|+
T Consensus 321 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~g~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~v~~~g~~~~ea~ 400 (451)
T 2vpq_A 321 LPYKQEDIKLTGHAIEFRINAENPYKNFMPSPGKIEQYLAPGGYGVRIESACYTNYTIPPYYDSMVAKLIIHEPTRDEAI 400 (451)
T ss_dssp CSCCGGGCCCCSEEEEEEEESEEGGGTTEECCSBCSEEECCCSTTEEEECCCCTTCBCCTTTCCEEEEEEEEESSHHHHH
T ss_pred CCCcccccCcCceEeeeEeeeeccccccCCCCCEEeEEECCCCCCcccccccccCCccCcccccccEEEEEEeCCHHHHH
Confidence 88766566678999999999999988899999999988777778999999999999999899999999999999999999
Q ss_pred HHHHHhhhccEEeccccCHHHHHHhcCCccccCCccccccccccchhc
Q 013241 380 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQEL 427 (447)
Q Consensus 380 ~~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~~~~~ 427 (447)
++++++++++.++|++||++||+++|.||+|++|+++|+||++++..+
T Consensus 401 ~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (451)
T 2vpq_A 401 MAGIRALSEFVVLGIDTTIPFHIKLLNNDIFRSGKFNTNFLEQNSIMN 448 (451)
T ss_dssp HHHHHHHHTCEEESSCCSHHHHHHHHTCHHHHHTCCCTTTTTTSCTTC
T ss_pred HHHHHHHhccEEeCcCCCHHHHHHHhCCHhhhcCCCccHHHhhhhhhh
Confidence 999999999999999999999999999999999999999999986554
No 10
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=100.00 E-value=3.1e-57 Score=470.76 Aligned_cols=358 Identities=53% Similarity=0.866 Sum_probs=325.2
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccC--------H---------------------
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVC--------I--------------------- 120 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~--------i--------------------- 120 (447)
|++||||+|+|+++.+++++|+++|+.++.+++..|..+.+..++|+.+. .
T Consensus 1 m~k~ilI~g~g~~~~~~~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~~~p~~~~~~~d~~~l~~~~~~~~~d~v~~~ 80 (451)
T 1ulz_A 1 MVNKVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGTDPLDTYLNKQRIINLALEVGADAIHPG 80 (451)
T ss_dssp CCSSEEECCCHHHHHHHHHHHHHHTCCEEEEECGGGTTCHHHHHSSEEEECCSSTTHHHHCHHHHHHHHHHTTCCEEECC
T ss_pred CCceEEEECCcHHHHHHHHHHHHcCCeEEEEechhhcccchhhhCcEEEEcCCCcccccCCHHHHHHHHHHcCCCEEEEC
Confidence 57999999999999999999999999999988766655555555443320 0
Q ss_pred ------------------------------------------------------------HHHHHHhhhhCCcEEEEeCC
Q 013241 121 ------------------------------------------------------------EEAVKLADELGFPVMIKATA 140 (447)
Q Consensus 121 ------------------------------------------------------------~e~~~~~~~ig~PvVvKP~~ 140 (447)
+++.+++++++||+||||..
T Consensus 81 ~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~g~PvvvKp~~ 160 (451)
T 1ulz_A 81 YGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATA 160 (451)
T ss_dssp SSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSSCCCHHHHHHHHHHHCSSEEEEECS
T ss_pred CCccccCHHHHHHHHHCCCeEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEECC
Confidence 56667778899999999999
Q ss_pred CCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEe
Q 013241 141 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEE 220 (447)
Q Consensus 141 g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~ 220 (447)
|+||+|+++|++.+|+.++++.+...+...|++..++|||||+|++|++++++++.+|++++++.++|+.++++++..+.
T Consensus 161 g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 240 (451)
T 1ulz_A 161 GGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLVEI 240 (451)
T ss_dssp SSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEE
T ss_pred CCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCCeEEEEEEEEcCCCCEEEEeeeecccccccccceeE
Confidence 99999999999999999999998877777787889999999999789999999998899999999999999989988889
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCC
Q 013241 221 APSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKL 300 (447)
Q Consensus 221 ~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l 300 (447)
+|++.++++..+++.+.+.++++++||+|++++||+++++|++||+|+|||+++++++++.++|+|++++++++++|.++
T Consensus 241 ~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~g~~~viEiN~R~~~~~~~~~~~~g~dl~~~~~~~~~G~~l 320 (451)
T 1ulz_A 241 APSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLYFIEMNTRIQVEHPVSEMVTGIDIVKWQIKIAAGEPL 320 (451)
T ss_dssp ESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCC
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeCCCCEEEEEeeCCCCccchHHHHHhCCCHHHHHHHHHcCCCC
Confidence 99877999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred CCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHHH
Q 013241 301 RYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIE 380 (447)
Q Consensus 301 ~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~ 380 (447)
++.+.++...++++++++++++|..+|.|.+|++..+..|.+++++++.+++.|+.++++||+++|+|+++|+|+++|++
T Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~g~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~v~~~g~~~~ea~~ 400 (451)
T 1ulz_A 321 TIKQEDVKFNGYAIECRINAEDPKKNFAPSTRVIERYYVPGGFGIRVEHAAARGFEVTPYYDSMIAKLITWAPTWDEAVE 400 (451)
T ss_dssp CCCGGGCCCCSEEEEEEEESEEGGGTTEECCSBCCSEECCCSTTEEEEECCCTTCBCCSSSCCEEEEEEEEESSHHHHHH
T ss_pred CCccccCCCceEEEEEeccccCcccCcCCCCceeceEECCCCCCcccccCccCCCEecccccchheEEEEECCCHHHHHH
Confidence 86655566778999999999999888999999999888777788999999999999999999999999999999999999
Q ss_pred HHHHhhhccEEeccccCHHHHHHhcCCccccCCccccccccccchhc
Q 013241 381 RMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQEL 427 (447)
Q Consensus 381 ~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~~~~~ 427 (447)
++.++++++.++|++||+++|+.+|.+|+|++|+++|+||+++++.+
T Consensus 401 ~~~~~~~~i~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (451)
T 1ulz_A 401 RMRAALETYEITGVKTTIPLLINIMKEKDFKAGKFTTKYLEEHPEVF 447 (451)
T ss_dssp HHHHHHHTCEECSSCCSHHHHHHHHHCHHHHHTCCCTTTTTTCGGGG
T ss_pred HHHHHHhhcEEeCccCCHHHHHHHhCCHHHhcCCCcchhhhhhHhhc
Confidence 99999999999999999999999999999999999999999986554
No 11
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=100.00 E-value=6.5e-57 Score=469.73 Aligned_cols=358 Identities=48% Similarity=0.774 Sum_probs=320.8
Q ss_pred cccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccC-------------H-------------
Q 013241 67 VTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVC-------------I------------- 120 (447)
Q Consensus 67 ~~~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~-------------i------------- 120 (447)
.++||+||||+|+|+++.+++++|+++|+.++.++...|..+++..++|+.+. +
T Consensus 2 ~~~~~k~ILI~g~g~~~~~i~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~y~d~~~l~~~~~~~~id 81 (461)
T 2dzd_A 2 ETRRIRKVLVANRGEIAIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIEAYLDIEGIIEIAKAHDVD 81 (461)
T ss_dssp -CCCCSEEEECSCHHHHHHHHHHHHHHTCEEEEEECGGGTTCTHHHHSSSEEECSTTSCTTGGGTCHHHHHHHHHHTTCC
T ss_pred CCCcCcEEEEECCcHHHHHHHHHHHHcCCEEEEEECCcccccchhhhCCEEEEcCCCCCccccccCHHHHHHHHHHhCCC
Confidence 45678999999999999999999999999999988766654444444433110 0
Q ss_pred -----------------------------------------------------------------HHHHHHhhhhCCcEE
Q 013241 121 -----------------------------------------------------------------EEAVKLADELGFPVM 135 (447)
Q Consensus 121 -----------------------------------------------------------------~e~~~~~~~ig~PvV 135 (447)
+++.+++++++||+|
T Consensus 82 ~v~~~~g~~~E~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~g~Pvv 161 (461)
T 2dzd_A 82 AIHPGYGFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSDGPVDGLEDVVAFAEAHGYPII 161 (461)
T ss_dssp EEECCSSSSTTCHHHHHHHHHTTCEESSCCHHHHHHTTSHHHHHHHHHHTTCCBCCBCSSCCSSHHHHHHHHHHHCSCEE
T ss_pred EEEECCCccccCHHHHHHHHHcCCEEECCCHHHHHHhhCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHhcCCcEE
Confidence 566777788999999
Q ss_pred EEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccc
Q 013241 136 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQ 215 (447)
Q Consensus 136 vKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~ 215 (447)
|||..|+||+|+++|++.+|+.++++.+..++...|++..++|||||+|++|++++++++.+|+++.+.+++|+.+++++
T Consensus 162 vKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~~~~~~~~~~~~~ 241 (461)
T 2dzd_A 162 IKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILGDYEGNIVHLYERDCSVQRRHQ 241 (461)
T ss_dssp EEESTTCSSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCSCEEEEEEEEECTTCCEEEEEEEEEEEEETTE
T ss_pred EEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCCCeEEEEEEEEcCCCCEEEEEecccccccccc
Confidence 99999999999999999999999999988877677888899999999998899999999988999988899999999999
Q ss_pred eeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHH
Q 013241 216 KLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVA 295 (447)
Q Consensus 216 k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a 295 (447)
+..+.+|++.++++..+++.+.+.++++++||.|++++||++++ |++||+|+|||+++++++++.++|+|+++.+++++
T Consensus 242 ~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~-~~~~viEiN~R~~~~~~~~~~~~g~dl~~~~~~~~ 320 (461)
T 2dzd_A 242 KVVEVAPSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLVSG-DEFYFIEVNPRIQVEHTITEMITGIDIVQSQILIA 320 (461)
T ss_dssp EEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEET-TEEEEEEEESSCCGGGHHHHHHHCCCHHHHHHHHH
T ss_pred ceEEECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeC-CCEEEEEEECCCCCceeeEEeecCCCHHHHHHHHH
Confidence 99999999779999999999999999999999999999999998 67999999999999999999999999999999999
Q ss_pred cCCCCCCC------ccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeee-cCCcccCCCCCccceEE
Q 013241 296 MGGKLRYK------QEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHV-YPDYVVPPSYDSLLGKL 368 (447)
Q Consensus 296 ~G~~l~~~------~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~-~~G~~v~~~~ds~lg~v 368 (447)
+|++++.. +..+...|+++++|+++++|..+|.|++|.+..+..+.+++++++..+ ..|++|+++||+++|+|
T Consensus 321 ~G~~l~~~~~~~~~~~~~~~~g~~~~~ri~~~~~~~~~~p~~g~i~~~~~~~~~~v~~~~~~~~~G~~i~~~~~~~~~~v 400 (461)
T 2dzd_A 321 DGCSLHSHEVGIPKQEDIRINGYAIQSRVTTEDPLNNFMPDTGKIMAYRSGGGFGVRLDAGNGFQGAVITPYYDSLLVKL 400 (461)
T ss_dssp TTCCTTSTTTCCCCGGGCCCCSEEEEEEEESEEGGGTTEECCEECSEEECCCCTTEEEEESSCSTTCEECSSSCCEEEEE
T ss_pred cCCCccccccccccccccccceeEEEeeecccCCccCccCCCCeeeEEecCCCCCeEeecccccCCCCcCcccchhhhee
Confidence 99988632 223456899999999999998889899999988888888899998764 89999999999999999
Q ss_pred EEEcCCHHHHHHHHHHhhhccEEeccccCHHHHHHhcCCccccCCccccccccccch
Q 013241 369 IVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQ 425 (447)
Q Consensus 369 i~~g~~~~eA~~~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~~~ 425 (447)
+++|+|+++|+++++++++++.++|+.||++++.+++.+|+|++|+++|+||+++.+
T Consensus 401 ~~~g~~~~~a~~~~~~~~~~i~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (461)
T 2dzd_A 401 STWALTFEQAARKMLRNLREFRIRGIKTNIPFLENVVQHPKFLSGEYDTSFIDTTPE 457 (461)
T ss_dssp EEEESSHHHHHHHHHHHHHTCEEESSCCSHHHHHHHHHSHHHHTSCCCTTHHHHCGG
T ss_pred EEEcCCHHHHHHHHHHHHHhcEEeCCcCCHHHHHHHhCChhhhCCCccchhhhcchh
Confidence 999999999999999999999999999999999999999999999999999998743
No 12
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=100.00 E-value=1.2e-55 Score=458.72 Aligned_cols=354 Identities=52% Similarity=0.915 Sum_probs=320.8
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccC------------H-----------------
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVC------------I----------------- 120 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~------------i----------------- 120 (447)
||+||||+|+|+++.+++++|+++|+.++.+++..|..+.+..++|+.+. .
T Consensus 1 m~k~ilI~g~g~~~~~~~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~~~p~~~~~~~~d~~~l~~~~~~~~~d~v~~ 80 (449)
T 2w70_A 1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHP 80 (449)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHTCEEEEEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHHHHHTCCEEEC
T ss_pred CCceEEEeCCcHHHHHHHHHHHHcCCeEEEEeccccccCchhhhCCEEEEcCCCCccccccCHHHHHHHHHHcCCCEEEE
Confidence 58999999999999999999999999999988766655555555443211 0
Q ss_pred -------------------------------------------------------------HHH-HHHhhhhCCcEEEEe
Q 013241 121 -------------------------------------------------------------EEA-VKLADELGFPVMIKA 138 (447)
Q Consensus 121 -------------------------------------------------------------~e~-~~~~~~ig~PvVvKP 138 (447)
+++ .+++++++||+||||
T Consensus 81 ~~g~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~g~PvvvKp 160 (449)
T 2w70_A 81 GYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKA 160 (449)
T ss_dssp CSSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHHTCCBCSBCSSCCCSCHHHHHHHHHHHCSSEEEEE
T ss_pred CCCCcccCHHHHHHHHHcCCceECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccccCCHHHHHHHHHHHhCCcEEEEE
Confidence 566 777888999999999
Q ss_pred CCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceee
Q 013241 139 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLL 218 (447)
Q Consensus 139 ~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~ 218 (447)
..|+||+|+++|++.+|+.++++.+...+...|++..++|||||+|++|++++++.+.+|++++++.++|++++.+++..
T Consensus 161 ~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 240 (449)
T 2w70_A 161 SGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVV 240 (449)
T ss_dssp TTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEE
T ss_pred CCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCCCeEEEEEEEEcCCCCEEEEeceecccccCCccee
Confidence 99999999999999999999999888776667777899999999998899999999988999999999999998898888
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCC
Q 013241 219 EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGG 298 (447)
Q Consensus 219 ~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~ 298 (447)
+.+|++.++++..+++.+.+.++++++||.|++++||++++ |++||+|+|||+++++++++.++|+|++++++++++|.
T Consensus 241 ~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-~~~~viEiN~R~~~~~~~~~~~~g~dl~~~~~~~~~G~ 319 (449)
T 2w70_A 241 EEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFEN-GEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQ 319 (449)
T ss_dssp EEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TEEEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHHTC
T ss_pred eeCCcccCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEC-CCEEEEEEECCCCccchHHHHHhCCCHHHHHHHHHCCC
Confidence 89998779999999999999999999999999999999998 67999999999999999999999999999999999999
Q ss_pred CCCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHH
Q 013241 299 KLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKA 378 (447)
Q Consensus 299 ~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA 378 (447)
+++..+.++...++++++++++++| .+|.|.+|.+..+..|..++++++.+++.|+.+++.+++++|+|+++|+|+++|
T Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~v~~~g~~~~~a 398 (449)
T 2w70_A 320 PLSIKQEEVHVRGHAVECRINAEDP-NTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYGENRDVA 398 (449)
T ss_dssp CCSSCGGGCCCCSEEEEEEEECBCT-TTCCBCCEECCEEECCCSTTEEEECCCCTTCEECSSSCSEEEEEEEEESSHHHH
T ss_pred CCCCchhccccceeEEEEeecccCc-cccCCCCCEeceEECCCCCcEEEEeccccCCEeccccCcceEEEEEEcCCHHHH
Confidence 9876655566789999999999999 888898999988877777889999999999999988999999999999999999
Q ss_pred HHHHHHhhhccEEeccccCHHHHHHhcCCccccCCccccccccccch
Q 013241 379 IERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQ 425 (447)
Q Consensus 379 ~~~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~~~ 425 (447)
+++++++++++.++|+.||+++|+++|.+|+|++|+++|+||++++.
T Consensus 399 ~~~~~~~~~~i~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (449)
T 2w70_A 399 IARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEKKLG 445 (449)
T ss_dssp HHHHHHHHHHCEEESSCCSHHHHHHHHTCHHHHHCCCCTTHHHHHHT
T ss_pred HHHHHHHHhhcEEeCcCCCHHHHHHHHcChhhccCCceehhhhhhhh
Confidence 99999999999999999999999999999999999999999998743
No 13
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=100.00 E-value=3.4e-56 Score=474.35 Aligned_cols=294 Identities=37% Similarity=0.630 Sum_probs=268.3
Q ss_pred HhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEee
Q 013241 126 LADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE 205 (447)
Q Consensus 126 ~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~ 205 (447)
+++++|||+||||..|+||+|+++|++.+|+.++++.+..++ .+..++|||||+|++|+++++++|++|++++++.
T Consensus 229 ~~~~~g~PvVvKp~~g~gg~Gv~~v~~~~el~~a~~~~~~~~----~~~~vlvEe~i~g~~e~sv~vl~d~~G~vv~l~~ 304 (554)
T 1w96_A 229 KAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEI----PGSPIFIMKLAGRARHLEVQLLADQYGTNISLFG 304 (554)
T ss_dssp HHHHHCSSEEEEETTCCTTTTEEEECSHHHHHHHHHHHHHHS----TTCCEEEEECCCSCEEEEEEEEECTTSCEEEEEE
T ss_pred HHHHcCCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHhhc----cCCCEEEEEecCCCcEEEEEEEEcCCCCEEEEee
Confidence 445689999999999999999999999999999998877653 2478999999998799999999998899999999
Q ss_pred eeeccccccceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEe-cCCCEEEEEEeccCCCccchhhhhcC
Q 013241 206 RDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTEMISS 284 (447)
Q Consensus 206 r~~s~~~~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d-~~G~~~~iEiNpR~~g~~~v~e~~~G 284 (447)
++|++++++++.++.+|++.++++..+++.+.+.++++++||+|++++||++| ++|++||+|||||++++++++++++|
T Consensus 305 ~~~~~~~~~~k~~~~~P~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~dg~~~~iEiN~R~~g~~~~~~~~~G 384 (554)
T 1w96_A 305 RDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSG 384 (554)
T ss_dssp EEEEEEETTEEEEEEESCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECTTTCCEEEEEEECSCCTTTHHHHHHHC
T ss_pred eeeeeEeeccceeeeCCCcCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCCEEEEEeeCCCCcceehhhhhcC
Confidence 99999999999999999987899999999999999999999999999999998 78889999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCCCC-----------------------------ccccccceeEEEEEEeeCCCCccccCCCCcee
Q 013241 285 VDLIEEQIHVAMGGKLRYK-----------------------------QEDIVLQGHSIECRINAEDPFKNFRPGPGRIT 335 (447)
Q Consensus 285 iDl~~~~i~~a~G~~l~~~-----------------------------~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~ 335 (447)
+|++++++++++|.+++.. +.++...||++++|+++++|..+|.|.+|++.
T Consensus 385 ~dl~~~~~~~a~G~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~~~~~~~p~~G~i~ 464 (554)
T 1w96_A 385 VNLPAAQLQIAMGIPMHRISDIRTLYGMNPHSASEIDFEFKTQDATKKQRRPIPKGHCTACRITSEDPNDGFKPSGGTLH 464 (554)
T ss_dssp CCHHHHHHHHHTTCCGGGCHHHHHHTTCCTTCCCCCCTTCCSHHHHHHCCCCCCCSEEEEEEEEEECCCCSSCCCSSSEE
T ss_pred CCHHHHHHHHHcCCCcccccchhhhccCCccccccccccccccccccccccCCCCeEEEEEEEEccCCCCCcccCCeEEe
Confidence 9999999999999987521 11345689999999999999999999999999
Q ss_pred EEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhhccEEec-cccCHHHHHHhcCCccccCCc
Q 013241 336 AYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITG-VPTTIEYHKLILDVEDFKNGK 414 (447)
Q Consensus 336 ~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G-~~tn~~~~~~~l~~~~f~~g~ 414 (447)
.+..+.+++++++.++.+|+.|+++||+++|+|+++|+|+++|++++.++++++.|+| ++||++||++||.+|+|++|+
T Consensus 465 ~~~~~~~~~v~~~~~~~~g~~i~~~~~~~~~~vi~~g~~~~eA~~~~~~al~~i~i~g~~~~~i~~~~~~~~~~~f~~~~ 544 (554)
T 1w96_A 465 ELNFRSSSNVWGYFSVGNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKELSIRGDFRTTVEYLIKLLETEDFEDNT 544 (554)
T ss_dssp EECCSSCSSEEEEEEECCSCSSCSSCSEEEEEEEEEESSHHHHHHHHHHHHHHHTTCC----CCHHHHHHHTSHHHHTTC
T ss_pred EEecCCCCCEEEeeecccCCccCCCCCCceEEEEEEeCCHHHHHHHHHHHHhccEEEeeccCCHHHHHHHhcCHhhhcCC
Confidence 8877777889998999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred ccccccccc
Q 013241 415 VDTAFIPKH 423 (447)
Q Consensus 415 ~~t~~~~~~ 423 (447)
++|+||++.
T Consensus 545 ~~t~~~~~~ 553 (554)
T 1w96_A 545 ITTGWLDDL 553 (554)
T ss_dssp CCTTHHHHH
T ss_pred ccchHhhhh
Confidence 999999863
No 14
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=100.00 E-value=5.5e-41 Score=343.24 Aligned_cols=307 Identities=16% Similarity=0.220 Sum_probs=246.5
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH-----------------------------
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------------------------- 120 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------------------------- 120 (447)
+++||||+|+|+++++++++|+++|+.++.+. ..+.++.+..++|+.+.+
T Consensus 6 ~~~~ilI~g~g~~~~~~~~a~~~~G~~~v~v~-~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~v~~~~~~~~~ 84 (403)
T 4dim_A 6 DNKRLLILGAGRGQLGLYKAAKELGIHTIAGT-MPNAHKPCLNLADEISYMDISNPDEVEQKVKDLNLDGAATCCLDTGI 84 (403)
T ss_dssp CCCEEEEECCCGGGHHHHHHHHHHTCEEEEEE-CSSCCHHHHHHCSEEEECCTTCHHHHHHHTTTSCCSEEECCSCSTTH
T ss_pred CCCEEEEECCcHhHHHHHHHHHHCCCEEEEEc-CCCCCCcchhhCCeEEEecCCCHHHHHHHHHHcCCCEEEeCCcchhH
Confidence 36899999999999999999999999999884 345566777777765433
Q ss_pred -------------------------------------------------HHHHHHhhhhCCcEEEEeCCCCCCcCeEEEC
Q 013241 121 -------------------------------------------------EEAVKLADELGFPVMIKATAGGGGRGMRLAK 151 (447)
Q Consensus 121 -------------------------------------------------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~ 151 (447)
+++.++++++|||+||||..|+||+|+++|+
T Consensus 85 ~~~a~~~~~~gl~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~ 164 (403)
T 4dim_A 85 VSLARICDKENLVGLNEEAAIMCGDKYKMKEAFKKYNVNTARHFVVRNENELKNALENLKLPVIVKATDLQGSKGIYIAK 164 (403)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHCHHHHHHHHHHHTCCCCCEECCCSHHHHHHHHHTSCSSEEEECSCC-----CEEES
T ss_pred HHHHHHHHHcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCCEEEEC
Confidence 7788888899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccc--cccceeeEecCCCCCCHH
Q 013241 152 EPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ--RRNQKLLEEAPSPALTPE 229 (447)
Q Consensus 152 ~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~--~~~~k~~~~~P~~~l~~~ 229 (447)
+.+|+.++++.+...+ .++.+++||||+| .|+++.++.. +|++..+........ .+........|+. ++++
T Consensus 165 ~~~el~~~~~~~~~~~----~~~~~lvEe~i~g-~e~sv~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~~ 237 (403)
T 4dim_A 165 KEEEAIDGFNETMNLT----KRDYCIVEEFIEG-YEFGAQAFVY-KNDVLFVMPHGDETYMSHTAVPVGHYVPLD-VKDD 237 (403)
T ss_dssp SHHHHHHHHHHHHHHC----SSSCCEEEECCCS-EEEEEEEEEE-TTEEEEEEEEEEEEEESSSEEEEEEEESCC-SCHH
T ss_pred CHHHHHHHHHHHHhcC----cCCcEEEEEccCC-cEEEEEEEEE-CCEEEEEEEecceeccCCCCcceeEEeCCC-CCHH
Confidence 9999999998877653 3578999999999 8999999975 466665543221111 1112234456776 9999
Q ss_pred HHHHHHHHHHHHHHHcCCcc-EeEEEEEEecCCCEEEEEEeccCCCcc--chhhhhcCCCHHHHHHHHHcCCCC-CCCcc
Q 013241 230 LRKAMGDAAVAAAASIGYIG-VGTVEFLLDERGSFYFMEMNTRIQVEH--PVTEMISSVDLIEEQIHVAMGGKL-RYKQE 305 (447)
Q Consensus 230 ~~~~l~~~a~~i~~alg~~G-~~~vEf~~d~~G~~~~iEiNpR~~g~~--~v~e~~~GiDl~~~~i~~a~G~~l-~~~~~ 305 (447)
..+++.+.+.++++++||.| ++++||+++ +|++||+|+|||+++++ .+++.++|+|++++++++++|+++ ++.+.
T Consensus 238 ~~~~l~~~a~~~~~~lg~~gg~~~ve~~~~-~~~~~~iEiN~R~~~~~~~~~~~~~~G~d~~~~~~~~~~G~~~~~~~~~ 316 (403)
T 4dim_A 238 IIEKTKTEVKKAIKALGLNNCAVNVDMILK-DNEVYIIELTGRVGANCLPELVEINYGIEYYKMIASMAISENPLVFWSQ 316 (403)
T ss_dssp HHHHHHHHHHHHHHHHTCCSEEEEEEEEEE-TTEEEEEEEESSCCSTTHHHHHHHHHTSCHHHHHHHHHTTCCTHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEEEEEE-CCcEEEEEEcCCCCCCcHHHHHHHHhCcCHHHHHHHHHcCCCccccccc
Confidence 99999999999999999996 999999998 56799999999999975 478899999999999999999988 44443
Q ss_pred ccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCc--E-EEeeeecCCcccCCCCCc--cceEEEEEcCCHHHHHH
Q 013241 306 DIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPF--V-RMDSHVYPDYVVPPSYDS--LLGKLIVWAPTREKAIE 380 (447)
Q Consensus 306 ~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~--v-r~d~~~~~G~~v~~~~ds--~lg~vi~~g~~~~eA~~ 380 (447)
+....+ ++++|++. |.|.+|+++.+..+...+ + .++..+++|+.|+++||+ ++|+|+++|+|+++|++
T Consensus 317 ~~~~~~-~~~~~~~~------~~~~~G~i~~~~~~~~~~~~v~~~~~~~~~G~~v~~~~d~~~~~g~vi~~~~~~~~a~~ 389 (403)
T 4dim_A 317 KSKENK-AGLARMII------ETEKSGILKEILNSNAKDDDIVEITFFKEENDEIKKFENSNDCIGQIIVKEETLDKCKD 389 (403)
T ss_dssp CCSSCC-EEEEEEEC------CSSCCEEEEEEEECCCCCTTEEEEEECCCTTCEECCSCSGGGCCEEEEEEESSHHHHHH
T ss_pred cccccc-cceEEEEE------ecCCCeEEEeeecccccCCCeEEEEEEcCCCCEeCCCCCCCceeEEEEEEeCCHHHHHH
Confidence 333334 46788875 568889999887554433 3 356889999999999998 89999999999999999
Q ss_pred HHHHhhhccEEe
Q 013241 381 RMKRALNDTIIT 392 (447)
Q Consensus 381 ~~~~al~~~~i~ 392 (447)
++.+++++++|+
T Consensus 390 ~~~~~~~~~~i~ 401 (403)
T 4dim_A 390 KLDVIINNINII 401 (403)
T ss_dssp HHHHHHTTEEEE
T ss_pred HHHHHhccEEEE
Confidence 999999999875
No 15
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=100.00 E-value=3.3e-37 Score=317.71 Aligned_cols=310 Identities=16% Similarity=0.237 Sum_probs=234.8
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH-----------------------------
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------------------------- 120 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------------------------- 120 (447)
..|+++|+++|.....|+++|+++|+.++.++...|....+...+++.+.+
T Consensus 4 ~~k~l~Il~~~~~~~~i~~aa~~lG~~vv~v~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~id~V~~~~ 83 (425)
T 3vot_A 4 RNKNLAIICQNKHLPFIFEEAERLGLKVTFFYNSAEDFPGNLPAVERCVPLPLFEDEEAAMDVVRQTFVEFPFDGVMTLF 83 (425)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTCEEEEEEETTSCCCCSCTTEEEEEEECTTTCHHHHHHHHHHHHHHSCCSEEECCC
T ss_pred CCcEEEEECCChhHHHHHHHHHHCCCEEEEEECCCcccccCHhhccEEEecCCCCCHHHHHHHHHHhhhhcCCCEEEECC
Confidence 358999999999999999999999999988876554333222222221110
Q ss_pred -----------------------------------------------------HHHHHHhhhhCCcEEEEeCCCCCCcCe
Q 013241 121 -----------------------------------------------------EEAVKLADELGFPVMIKATAGGGGRGM 147 (447)
Q Consensus 121 -----------------------------------------------------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv 147 (447)
+++. ..++|||+||||..|+||+||
T Consensus 84 e~~~~~~a~l~e~lglpg~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~--~~~~g~P~vvKp~~g~gs~Gv 161 (425)
T 3vot_A 84 EPALPFTAKAAEALNLPGLPFTTMENCRNKNKTRSILQQNGLNTPVFHEFHTLADLE--NRKLSYPLVVKPVNGFSSQGV 161 (425)
T ss_dssp GGGHHHHHHHHHHTTCSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEESSGGGGT--TCCCCSSEEEEESCC-----C
T ss_pred chhHHHHHHHHHHcCCCCCCHHHHHHhhCHHHHHHHHHHCCCCCCceeccCcHHHHH--HhhcCCcEEEEECCCCCCCCc
Confidence 2222 246799999999999999999
Q ss_pred EEECCHHHHHHHHHHHHHHHH-----HhcCCCcEEEeeccCCCceEEEEEEEeCCCcEE--EEeeeeeccccccceeeEe
Q 013241 148 RLAKEPDEFVKLLQQAKSEAA-----AAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVV--HFGERDCSIQRRNQKLLEE 220 (447)
Q Consensus 148 ~~v~~~~el~~~~~~~~~~~~-----~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv--~l~~r~~s~~~~~~k~~~~ 220 (447)
++|++.+|+.++++.+..... ...++..+++||||+| +|++++++.++ |++. .+..+.++...........
T Consensus 162 ~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~G-~e~sv~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 239 (425)
T 3vot_A 162 VRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFIDG-PEFAIETLSIQ-GNVHVLSIGYKGNSKGPFFEEGVYI 239 (425)
T ss_dssp EEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCCS-CEEEEEEEEET-TEEEEEEEEEEECCCCSBCCCCEEE
T ss_pred eEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEecC-cEEEEEEEEeC-CcEEEEeEEEEeccCCCccccceEe
Confidence 999999999999988765421 1224578999999999 89999999763 4543 4455666666666677778
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCc-cEeEEEEEEecCCCEEEEEEeccCCCc---cchhhhhcCCCHHHHHHHHHc
Q 013241 221 APSPALTPELRKAMGDAAVAAAASIGYI-GVGTVEFLLDERGSFYFMEMNTRIQVE---HPVTEMISSVDLIEEQIHVAM 296 (447)
Q Consensus 221 ~P~~~l~~~~~~~l~~~a~~i~~alg~~-G~~~vEf~~d~~G~~~~iEiNpR~~g~---~~v~e~~~GiDl~~~~i~~a~ 296 (447)
.|++ ++++..+++.+.+.++++++|+. |++|+||++|++|++||+|+|||++|. +.+++.++|+|+++++++.++
T Consensus 240 ~Pa~-l~~~~~~~i~~~~~~~~~alg~~~G~~~ve~~~~~dG~~~~iEiN~R~gG~~~~~~l~~~~~G~d~~~~~i~~al 318 (425)
T 3vot_A 240 APAQ-LKEETRLAIVKEVTGAVSALGIHQGPAHTELRLDKDGTPYVIEVGARIGGSGVSHYIVKESTGINFMQLVLQNAL 318 (425)
T ss_dssp ESCC-CCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEECTTCCEEEEEEESSCGGGGHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred eccc-CCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEEEeCCcEEEEEEecCCCCCCchHHHHHHHHCCCHHHHHHHHHC
Confidence 8997 99999999999999999999997 999999999999999999999999874 568899999999999999999
Q ss_pred CCCCCCCcc-ccccceeEEEEEEeeCCCCccccCCCCceeEEe----cCCCCcE-EEeeeecCCcccCCC--CCccceEE
Q 013241 297 GGKLRYKQE-DIVLQGHSIECRINAEDPFKNFRPGPGRITAYL----PAGGPFV-RMDSHVYPDYVVPPS--YDSLLGKL 368 (447)
Q Consensus 297 G~~l~~~~~-~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~----~~~~~~v-r~d~~~~~G~~v~~~--~ds~lg~v 368 (447)
|........ ......++....+.+ +.+|++..+. ....|+| +++....+|+.+.+. +++++|+|
T Consensus 319 g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~G~~~~i~g~~~~~~~p~v~~~~~~~~~G~~v~~~~~~~~~~g~v 390 (425)
T 3vot_A 319 KPLESSEFEGEIRPVRTAGNYIIPV--------QGSGTFEKIDGLEEVKQRQEVKRVFQFMRRGAKILPYPHFSGYPGFI 390 (425)
T ss_dssp SCCCGGGSCSCCCCSSEEEEEECCC--------CSCEEEEEEETHHHHHTCTTEEEEEECCCTTCEECCTTCCCCCSEEE
T ss_pred CCccccccccccccceEEEEEEEcC--------CCCeEEEecCCHHHHhcCCCeEEEEEEecCCCEeCCCCCCCCeEEEE
Confidence 975533221 122233444433322 4568777653 1234676 677788999999764 55689999
Q ss_pred EEEcCCHHHHHHHHHHhhhccEEe
Q 013241 369 IVWAPTREKAIERMKRALNDTIIT 392 (447)
Q Consensus 369 i~~g~~~~eA~~~~~~al~~~~i~ 392 (447)
+++|+|+++|.+++++++++++|.
T Consensus 391 ~~~g~~~~ea~~~~~~~~~~i~i~ 414 (425)
T 3vot_A 391 LTSHHSYEECEAFYRELDDELHII 414 (425)
T ss_dssp EEEESSHHHHHHHHHHHHHHCEEE
T ss_pred EEEECCHHHHHHHHHHHhCccEEE
Confidence 999999999999999999999985
No 16
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=100.00 E-value=4.5e-37 Score=348.78 Aligned_cols=276 Identities=21% Similarity=0.349 Sum_probs=226.8
Q ss_pred HHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcE
Q 013241 121 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNV 200 (447)
Q Consensus 121 ~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~v 200 (447)
+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+...+ ....++|||||+|.+|+++++++|.+|++
T Consensus 153 ~ea~~~~~~ig~PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~~~~----~~~~vlvEe~I~G~~E~~v~v~~d~~g~~ 228 (1073)
T 1a9x_A 153 EEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLS----PTKELLIDESLIGWKEYEMEVVRDKNDNC 228 (1073)
T ss_dssp HHHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHC----TTSCEEEEECCTTSEEEEEEEEECTTCCE
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCceEEeCCHHHHHHHHHHHHhhC----CCCcEEEEEccCCCeEEEEEEEEeCCCCE
Confidence 77888889999999999999999999999999999999998776542 34689999999998899999999999998
Q ss_pred EEEeeeeecccc------ccceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCc-cEeEEEEEEec-CCCEEEEEEeccC
Q 013241 201 VHFGERDCSIQR------RNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYI-GVGTVEFLLDE-RGSFYFMEMNTRI 272 (447)
Q Consensus 201 v~l~~r~~s~~~------~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~-G~~~vEf~~d~-~G~~~~iEiNpR~ 272 (447)
+.++ ++++ +.++....+|++.++++..+++.+.+.++++++||+ |.+++||++++ +|++||+|||||+
T Consensus 229 v~~~----~~e~~dp~~v~~g~s~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vdf~~~~~~g~~~viEiNpR~ 304 (1073)
T 1a9x_A 229 IIVC----SIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRV 304 (1073)
T ss_dssp EEEE----EEEESSCTTSCGGGSCEEESCCSCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEECTTTCCEEEEEEESSC
T ss_pred EEEE----EEecccCCccccCcEEEEecCCCCCHHHHHHHHHHHHHHHHHcCcccCceEEEEEEECCCCCEEEEEecCCC
Confidence 8873 3333 234566778987799999999999999999999999 99999999996 6899999999999
Q ss_pred CCccchhhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeC-CCCccccCCCCceeEEecCCCCcEEEeeee
Q 013241 273 QVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAE-DPFKNFRPGPGRITAYLPAGGPFVRMDSHV 351 (447)
Q Consensus 273 ~g~~~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae-~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~ 351 (447)
++++.+++.++|+|+++.++++++|.+++..... ++.+ +|. .|.|+.+.+.. ..| +..++...
T Consensus 305 ~~ss~l~~~atG~~l~~~~~~~a~G~~l~~~~~~-----------i~~~~~~a-~f~p~~~~v~~-~ip---~~~~~~~~ 368 (1073)
T 1a9x_A 305 SRSSALASKATGFPIAKVAAKLAVGYTLDELMND-----------ITGGRTPA-SFEPSIDYVVT-KIP---RFNFEKFA 368 (1073)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHTTCCGGGSBCT-----------TTTTCSBS-CSCCBCSSEEE-EEE---ECCGGGCT
T ss_pred CccHHHHHHHhCCCHHHHHHHHHcCCChHHhhcc-----------ccCccCHH-HcccCCCcEEE-Ecc---cccccccC
Confidence 9999999999999999999999999988654322 2333 443 67788887732 222 12233333
Q ss_pred cCCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhhccEEeccccC--------HHHHHHhcCCcc----------ccCC
Q 013241 352 YPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTT--------IEYHKLILDVED----------FKNG 413 (447)
Q Consensus 352 ~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G~~tn--------~~~~~~~l~~~~----------f~~g 413 (447)
..+..+.+.+++ +|+|+++|+|++||++++.++++ +.+.|+.+| .+.+...|.+|. |+.|
T Consensus 369 ~~~~~~~~~~~~-~G~v~~~g~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~a~~~g 446 (1073)
T 1a9x_A 369 GANDRLTTQMKS-VGEVMAIGRTQQESLQKALRGLE-VGATGFDPKVSLDDPEALTKIRRELKDAGADRIWYIADAFRAG 446 (1073)
T ss_dssp TSCCBCCSSCCC-CEEEEEEESSHHHHHHHHHHHSS-SSCSSSCCSSCTTCTTHHHHHHHHHHTCBTTHHHHHHHHHHTT
T ss_pred CCCcccCCCccC-cEEEEEEcCCHHHHHHHHHHhhc-ccccCcCccccccccccHHHHHHHHhCCCccHHHHHHHHHHcC
Confidence 446677788888 99999999999999999999997 889998855 577888888876 7888
Q ss_pred ----------ccccccccc
Q 013241 414 ----------KVDTAFIPK 422 (447)
Q Consensus 414 ----------~~~t~~~~~ 422 (447)
++|..||++
T Consensus 447 ~~~~~~~~~~~i~~~f~~~ 465 (1073)
T 1a9x_A 447 LSVDGVFNLTNIDRWFLVQ 465 (1073)
T ss_dssp BCHHHHHHHHCCCHHHHHH
T ss_pred CCHHHHHHhhccCHHHHHH
Confidence 556666665
No 17
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=100.00 E-value=9.3e-37 Score=307.90 Aligned_cols=289 Identities=16% Similarity=0.186 Sum_probs=212.7
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH------------------------------
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI------------------------------ 120 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i------------------------------ 120 (447)
||||+|+++|..+..++++++++|+.++.+.. |+++++..++|+.+.+
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~--~~~~~~~~~aD~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~ 78 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDK--NPQALIRNYADEFYCFDVIKEPEKLLELSKRVDAVLPVNENLACIE 78 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEES--CTTCTTTTTSSEEEECCTTTCHHHHHHHHTSSSEEEECCCCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC--CCCChhHhhCCEEEECCCCcCHHHHHHHhcCCCEEEECCCChhHHH
Confidence 69999999999999999999999999998854 4555666677665433
Q ss_pred --------------------------HHHHHHhh----------hhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHH
Q 013241 121 --------------------------EEAVKLAD----------ELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAK 164 (447)
Q Consensus 121 --------------------------~e~~~~~~----------~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~ 164 (447)
....++++ .+|||+||||..|+||+|++++++.+++...
T Consensus 79 ~~~~~~~~~~~~~g~~~~a~~~~~dK~~~k~~l~~~gip~~~~~~ig~P~vvKp~~g~g~~gv~~v~~~~~~~~~----- 153 (363)
T 4ffl_A 79 FLNSIKEKFSCPVLFDFEAYRISRDKKKSKDYFKSIGVPTPQDRPSKPPYFVKPPCESSSVGARIIYDDKDLEGL----- 153 (363)
T ss_dssp HHHHHGGGCSSCBCCCHHHHHHHTSHHHHHHHHHHTTCCCCCBSCSSSCEEEECSSCCTTTTCEEEC------CC-----
T ss_pred HHHHHHHHCCCccCCCHHHHHHhhCHHHHHHHHHhcCCCCCCceecCCCEEEEECCCCCCcCeEEeccHHHhhhh-----
Confidence 11222222 3589999999999999999999999886422
Q ss_pred HHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCHHHHHHHHHHHHHHHHH
Q 013241 165 SEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAAS 244 (447)
Q Consensus 165 ~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~a 244 (447)
...+++||||+| +|+++++++|+.+.++....+++..+....+... |++ .. +++.+.+.+++++
T Consensus 154 --------~~~~~~ee~i~g-~e~sv~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--p~~-~~----~~~~~~a~~~~~~ 217 (363)
T 4ffl_A 154 --------EPDTLVEEYVEG-EVVSLEVVGDGSHFAVVKETLVHIDETYDCHMVT--PLP-AN----PLFRQISHDLAAN 217 (363)
T ss_dssp --------CTTCEEEECCCS-EEEEEEEEEESSCEEECCCEEEEECTTSCEEEEE--ECC-CC----HHHHHHHHHHHHT
T ss_pred --------ccchhhhhhccC-cEEEEEEEEECCeEEEEEEEEeccCCcccceeec--chh-HH----HHHHHHHHHHHHh
Confidence 478999999999 9999999999887777777777776666665554 443 23 4577899999999
Q ss_pred cCCccEeEEEEEEecCCCEEEEEEeccCCCccc-hhhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCC
Q 013241 245 IGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHP-VTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDP 323 (447)
Q Consensus 245 lg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~-v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p 323 (447)
+||+|++++||+++++| +||+|||||+++.++ +++.++|+|++++++++++|.+++... ....++++.+++++++.
T Consensus 218 l~~~G~~~vef~~~~~~-~~viEiN~R~~g~~~~~~~~~~g~dl~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~ 294 (363)
T 4ffl_A 218 LPLKGIMDVEAIFGPKG-LRVIEIDARFPSQTPTVVYYSSGINLIELLFRAFTDGVEEIRA--IPENKYCIYEHLMFGEN 294 (363)
T ss_dssp TTCEEEEEEEEEEETTE-EEEEEEECSCCSSHHHHHHHHHCCCHHHHHHHHTTTCCCCC------CCCEEEEEEEEECGG
T ss_pred CCccceeeeeeEEeCCe-EEEEEEeCCCCCChHHHHHHHHCcCHHHHHHHHHCCCCCCccc--cCCCceEEEEEEecCCC
Confidence 99999999999999766 999999999998765 899999999999999999999886543 33456777777776543
Q ss_pred CccccCCCCceeEEecCCCCcEEEeeeecCCc-ccCCCCCccceEEEEEcCCHHHHHHHHHHhhhccEE
Q 013241 324 FKNFRPGPGRITAYLPAGGPFVRMDSHVYPDY-VVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTII 391 (447)
Q Consensus 324 ~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~-~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i 391 (447)
..+.|..+.+. ...+.+... +...+. ...+.+++++|+|+++|+|++||++|++++++.++.
T Consensus 295 -~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~v~~vi~~G~~~~eA~~k~~~al~~i~~ 357 (363)
T 4ffl_A 295 -GVLIPVGEQVL----SMGSDYGKF-YEEPGIEIFLCKGEYPVFTMVFWGKDREETGAKRCKGLSVLKE 357 (363)
T ss_dssp -GBEEECCHHHH----TTCSEEEEE-EEETTEEEEEEESSSCEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred -CccCCCCceEE----ecCCCeeEE-EecCCCCCEecCCCCceEEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 23344433331 111222211 111111 123467889999999999999999999999998764
No 18
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=100.00 E-value=1.9e-34 Score=296.84 Aligned_cols=300 Identities=19% Similarity=0.185 Sum_probs=231.4
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH-----------------------------
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------------------------- 120 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------------------------- 120 (447)
+.+||||+|+|+++.+++++++++|+.++.+ ..+.+++...++|+.+..
T Consensus 34 ~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~--d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~~~e~~~~~~ 111 (419)
T 4e4t_A 34 PGAWLGMVGGGQLGRMFCFAAQSMGYRVAVL--DPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVSTEFENVPAAS 111 (419)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEE--CSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEECCTTCCHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEE--CCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEEccCcCCHHH
Confidence 4589999999999999999999999998766 345555666666654432
Q ss_pred ----------------------------------------------HHHHHHhhh----hCCcEEEEeC-CCCCCcCeEE
Q 013241 121 ----------------------------------------------EEAVKLADE----LGFPVMIKAT-AGGGGRGMRL 149 (447)
Q Consensus 121 ----------------------------------------------~e~~~~~~~----ig~PvVvKP~-~g~Gg~Gv~~ 149 (447)
+++.+++++ + ||+||||. .|++|+|+++
T Consensus 112 ~~~l~~~~~vgp~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~v~~~~e~~~~~~~~~~~~-~P~VvKp~~~g~~G~Gv~~ 190 (419)
T 4e4t_A 112 LDFLARTTFVAPAGRCVAVAQDRIAEKRFIEASGVPVAPHVVIESAAALAALDDAALDAV-LPGILKTARLGYDGKGQVR 190 (419)
T ss_dssp HHHHHTTSEESSCHHHHHHHTCHHHHHHHHHHTTCCBCCEEEECSHHHHHTSCHHHHHTT-CSEEEEESSSCCTTTTEEE
T ss_pred HHHHHccCCcCCCHHHHHHhcCHHHHHHHHHHcCcCCCCeEEECCHHHHHHHHHhhcccc-CCEEEEecCCCCCCCceEE
Confidence 666666777 8 99999999 8889999999
Q ss_pred ECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCHH
Q 013241 150 AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPE 229 (447)
Q Consensus 150 v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~~ 229 (447)
|++.+|+.++++.+ ++.++++||||++++|+++.+++|.+|++..++..+. ..+.........|++.++++
T Consensus 191 v~~~~el~~a~~~~--------~~~~~lvEe~i~~~~Eisv~v~~~~~G~~~~~~~~e~-~~~~g~~~~~~~Pa~~l~~~ 261 (419)
T 4e4t_A 191 VSTAREARDAHAAL--------GGVPCVLEKRLPLKYEVSALIARGADGRSAAFPLAQN-VHHNGILALTIVPAPAADTA 261 (419)
T ss_dssp ECSHHHHHHHHHHT--------TTCCEEEEECCCEEEEEEEEEEECTTSCEEECCCEEE-EEETTEEEEEEESCTTCCHH
T ss_pred ECCHHHHHHHHHhc--------CCCcEEEeecCCCCeEEEEEEEEcCCCCEEEEeCeEE-EeeCCeEEEEEcCCCCCCHH
Confidence 99999999888653 4588999999997699999999999998877654221 11112222336688779999
Q ss_pred HHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCCCCCcccccc
Q 013241 230 LRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVL 309 (447)
Q Consensus 230 ~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~ 309 (447)
+.+++.+++.+++++|||.|++++||+++++|++||+|||||+++++++++.++|+|+++++++.++|.+++... .
T Consensus 262 ~~~~~~~~a~~i~~~lg~~G~~~vE~~~~~dG~~~v~EiNpR~~~sg~~t~~~~~~s~~~~~~ra~~G~pl~~~~----~ 337 (419)
T 4e4t_A 262 RVEEAQQAAVRIADTLGYVGVLCVEFFVLEDGSFVANEMAPRPHNSGHYTVDACATSQFEQQVRAMTRMPLGNPR----Q 337 (419)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEEEEEETTCCEEEEEEESSCCGGGTTHHHHBSSCHHHHHHHHHTTCCCCCCC----B
T ss_pred HHHHHHHHHHHHHHHCCCeeEEEEEEEEeCCCCEEEEEEeCCCCCCCCeEeeccCCCHHHHHHHHHcCCCCCCcc----c
Confidence 999999999999999999999999999998899999999999999999999999999999999999999986433 2
Q ss_pred ceeEEEEEEeeCCCCc-c--ccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHHHHHHHhh
Q 013241 310 QGHSIECRINAEDPFK-N--FRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRAL 386 (447)
Q Consensus 310 ~g~ai~~ri~ae~p~~-~--f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al 386 (447)
...+++.++...+-.. . -.+....+..+ ...|++.+ ++|......+ ++++|+|++.|+|.++|++++.++.
T Consensus 338 ~~~~~m~n~lg~~~~~~~~~~~~~~~~~~~~--l~~p~~~~--~~ygk~~~~~--~rkmGhv~~~~~~~~~~~~~a~~~~ 411 (419)
T 4e4t_A 338 HSPAAMLNILGDVWFPNGAAAGAVTPPWDTV--AAMPAAHL--HLYGKEEARV--GRKMGHVNFTAEMRDDAVAAATACA 411 (419)
T ss_dssp CSCEEEEEEEGGGGCTTCGGGCCCCCCHHHH--HTSTTEEE--EECCCSCCCT--TCEEEEEEEECSSHHHHHHHHHHHH
T ss_pred cCCeEEEEEecCccccccccccccchHHHHH--HhCCCCEE--EECCCCCCCC--CCceEEEEEEeCCHHHHHHHHHHHH
Confidence 3347777787642100 0 00111111212 12456654 4454334444 5679999999999999999999998
Q ss_pred hccEE
Q 013241 387 NDTII 391 (447)
Q Consensus 387 ~~~~i 391 (447)
+.+.|
T Consensus 412 ~~l~~ 416 (419)
T 4e4t_A 412 QLLRV 416 (419)
T ss_dssp HHHTC
T ss_pred HhcCc
Confidence 87754
No 19
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=100.00 E-value=2.4e-34 Score=294.63 Aligned_cols=295 Identities=19% Similarity=0.235 Sum_probs=230.2
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhcc----------------------------------
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE---------------------------------- 116 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~---------------------------------- 116 (447)
.+||+|+++|+.+..++++++++|+.++.+. ..+ ++...+++.
T Consensus 24 ~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~--~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~e~e~~~~~ 100 (403)
T 3k5i_A 24 SRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADN--SPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTAEIEHVDTY 100 (403)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STT--CTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEESSSCSCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCC--CcHHHhccccceeecCCCCHHHHHHHHHhCCEEEECCCCCCHH
Confidence 5899999999999999999999999988876 332 122222220
Q ss_pred -------ccCH--------------------------------------HHHHHHhhhhCCcEEEEeCCCC-CCcCeEEE
Q 013241 117 -------SVCI--------------------------------------EEAVKLADELGFPVMIKATAGG-GGRGMRLA 150 (447)
Q Consensus 117 -------~v~i--------------------------------------~e~~~~~~~ig~PvVvKP~~g~-Gg~Gv~~v 150 (447)
++++ +++.++++++|||+||||..|+ +|+|++++
T Consensus 101 ~l~~l~~g~~v~p~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~g~P~VvKp~~gg~~g~Gv~~v 180 (403)
T 3k5i_A 101 ALEEVASEVKIEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAKVGEQLGYPLMLKSKTMAYDGRGNFRV 180 (403)
T ss_dssp HHHHHTTTSEESSCHHHHHHHTSHHHHHHHHHTTTCCBCCEEEESSCCHHHHHHHHHHHCSSEEEEESSSCCTTTTEEEE
T ss_pred HHHHHHcCCccCcCHHHHHHhcCHHHHHHHHHHCCcCCCCEEEEcCCCHHHHHHHHHHhCCCEEEEeCCCCcCCCCEEEE
Confidence 1111 5677778899999999999997 99999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCHHH
Q 013241 151 KEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPEL 230 (447)
Q Consensus 151 ~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~~~ 230 (447)
++.+|+.++++.+ ++.++++||||++++|+++.+++|..| +...+..+..++.+.......|++.++++.
T Consensus 181 ~~~~el~~a~~~~--------~~~~~lvEe~i~~~~E~sv~v~~~~~g--~~~~p~~~~~~~~g~~~~~~~Pa~~l~~~~ 250 (403)
T 3k5i_A 181 NSQDDIPEALEAL--------KDRPLYAEKWAYFKMELAVIVVKTKDE--VLSYPTVETVQEDSICKLVYAPARNVSDAI 250 (403)
T ss_dssp CSTTSHHHHHHHT--------TTSCEEEEECCCEEEEEEEEEEECSSC--EEECCCEEEEEETTEEEEEEESCSSCCHHH
T ss_pred CCHHHHHHHHHhc--------CCCcEEEecCCCCCeEEEEEEEEcCCC--EEEeCCeeeEEeCCEEEEEEeCCCCCCHHH
Confidence 9999999888653 357899999999669999999999887 445555666777777677788987799999
Q ss_pred HHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCCCCCccccccc
Q 013241 231 RKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQ 310 (447)
Q Consensus 231 ~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~ 310 (447)
.+++.+.+.+++++|||.|++++||+++++|++||+|+|||++++..++...+|+|+++++++.++|.|++... ....
T Consensus 251 ~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~dg~~~v~EiNpR~~~sg~~~~~~~~~s~~~~~~ra~~G~pl~~~~--~~~~ 328 (403)
T 3k5i_A 251 NQKAQELARKAVAAFDGKGVFGVEMFLLEDDSIMLCEIASRIHNSGHYTIEGCALSQFDAHLRAILDLPIPAQS--LEIR 328 (403)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEEEEEEEETTSCEEEEEEESSCCGGGTTHHHHBSSCHHHHHHHHHTTCCCCGGG--GSBS
T ss_pred HHHHHHHHHHHHHHcCCeeEEEEEEEEeCCCcEEEEEeecCCCCCCceeeeecCCCHHHHHHHHHcCCCCCccc--ccCC
Confidence 99999999999999999999999999998899999999999998655555677999999999999999886432 2334
Q ss_pred eeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhhcc
Q 013241 311 GHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDT 389 (447)
Q Consensus 311 g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~ 389 (447)
+.+++.++..++... +....+.. ....|++.+ ++|......+ ++++|+|++.|+|.++|++++.++++.+
T Consensus 329 ~~a~m~nilg~~~~~---~~~~~~~~--~~~~p~~~~--~~ygk~~~~~--~rkmGhv~~~~~~~~~~~~~a~~~~~~~ 398 (403)
T 3k5i_A 329 QPSIMLNIIGGAAPD---THLQAAEC--ALSIPNASI--HLYSKGAAKP--GRKMGHITVTAPTMHEAETHIQPLIDVV 398 (403)
T ss_dssp SCEEEEEEECCSSSS---HHHHHHHH--HTTSTTEEE--EECCCCSCCT--TCEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEecCCccc---cchhHHHH--HhcCCCCEE--EECCCCCCCC--CCeeEEEEEEcCCHHHHHHHHHHHHhhh
Confidence 568888888764311 00001111 223466653 4554434555 5779999999999999999999998764
No 20
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=100.00 E-value=2e-34 Score=293.27 Aligned_cols=305 Identities=17% Similarity=0.191 Sum_probs=222.2
Q ss_pred cCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChh-----------------hHHHHHh-----------------
Q 013241 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKD-----------------ALHVKLA----------------- 114 (447)
Q Consensus 69 ~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~-----------------~~~~~la----------------- 114 (447)
.+.+||||+++|+.+.+++++++++|+.++.++...+.. .+.....
T Consensus 9 ~~~~~ili~g~g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~d~~~~~~~~d~~~l~~~~~~~~~d~v~~~~e~~~~~ 88 (391)
T 1kjq_A 9 PAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAIATD 88 (391)
T ss_dssp TTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEECSSCSCHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCCchhhhccceEECCCCCHHHHHHHHHHcCCCEEEECCCcCCHH
Confidence 356899999999999999999999999888776543211 1111110
Q ss_pred ------cccc----------------------------CH---------HHHHHHhhhhCCcEEEEeCCCCCCcCeEEEC
Q 013241 115 ------DESV----------------------------CI---------EEAVKLADELGFPVMIKATAGGGGRGMRLAK 151 (447)
Q Consensus 115 ------d~~v----------------------------~i---------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~ 151 (447)
+.++ ++ +++.+++++++||+||||..|+||+|+++|+
T Consensus 89 ~~~~l~~~gi~~~~~~~~~~~~~dK~~~~~~l~~~~gip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~ 168 (391)
T 1kjq_A 89 MLIQLEEEGLNVVPCARATKLTMNREGIRRLAAEELQLPTSTYRFADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIR 168 (391)
T ss_dssp HHHHHHHTTCEESSCHHHHHHHHSHHHHHHHHHTTSCCCBCCEEEESSHHHHHHHHHHHCSSEEEEESCC---CCCEEEC
T ss_pred HHHHHHhCCCCcCCCHHHHHHhhCHHHHHHHHHHhCCCCCCCeeeeCCHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEEC
Confidence 1111 00 6677777889999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCHHHH
Q 013241 152 EPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELR 231 (447)
Q Consensus 152 ~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~~~~ 231 (447)
+.+|+.++++.+...... .+..+++||||+++.|+++.++.++.| +..+...+ .............|++ ++++..
T Consensus 169 ~~~el~~~~~~~~~~~~~--~~~~~lvEe~i~~g~E~sv~~~~~~~g-~~~~~~~~-~~~~~~~~~~~~~p~~-l~~~~~ 243 (391)
T 1kjq_A 169 SAEQLAQAWKYAQQGGRA--GAGRVIVEGVVKFDFEITLLTVSAVDG-VHFCAPVG-HRQEDGDYRESWQPQQ-MSPLAL 243 (391)
T ss_dssp SGGGHHHHHHHHHHHSGG--GCCCEEEEECCCCSEEEEEEEEEETTE-EEECCCEE-EEEETTEEEEEEECCC-CCHHHH
T ss_pred CHHHHHHHHHHHHhhccc--CCCCEEEEEecCCCeEEEEEEEEeCCC-eEEccCcc-eEEECCEEEEEEeCCC-CCHHHH
Confidence 999999999887654211 247899999999549999999998765 22221111 0111111122345776 899999
Q ss_pred HHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCCCCCccccccce
Q 013241 232 KAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQG 311 (447)
Q Consensus 232 ~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g 311 (447)
+++.+.+.++++++||.|++++||+++++ ++||+|+|||++++..++...+|+|++++++++++|.+++. +...+
T Consensus 244 ~~~~~~a~~~~~~lg~~G~~~ve~~~~~~-~~~viEiN~R~~~~~~~~~~~~g~~~~~~~~~~~~G~~~~~----~~~~~ 318 (391)
T 1kjq_A 244 ERAQEIARKVVLALGGYGLFGVELFVCGD-EVIFSEVSPRPHDTGMVTLISQDLSEFALHVRAFLGLPVGG----IRQYG 318 (391)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEEEEEETT-EEEEEEEESSCCGGGGGHHHHBSSCHHHHHHHHHTTCCCCC----CCBCS
T ss_pred HHHHHHHHHHHHHcCCeeEEEEEEEEeCC-cEEEEEEECCCCCCcceeeeecCcCHHHHHHHHHcCCCCCC----ccccC
Confidence 99999999999999999999999999977 59999999999987666656679999999999999998752 33567
Q ss_pred eEEEEEEeeCCCCccccCCC-CceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhhccE
Q 013241 312 HSIECRINAEDPFKNFRPGP-GRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTI 390 (447)
Q Consensus 312 ~ai~~ri~ae~p~~~f~p~~-g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~ 390 (447)
+++++++++++|.. .|.. |....+. |++.+.. + | ...+.+++++|+|+++|+|+++|+++++++++++.
T Consensus 319 ~~~~~~~~~~~~~~--~~~~~~~~~~~~----pg~~v~~--~-~-~~~~~~~~~lg~v~~~g~~~~~a~~~~~~~~~~i~ 388 (391)
T 1kjq_A 319 PAASAVILPQLTSQ--NVTFDNVQNAVG----ADLQIRL--F-G-KPEIDGSRRLGVALATAESVVDAIERAKHAAGQVK 388 (391)
T ss_dssp SEEEEEECCEEEES--SCEEECGGGSCB----TTEEEEE--C-C-CCCEEEECCCEEEEEECSSHHHHHHHHHHHHHHCE
T ss_pred cEEEEEEEccCccc--ccccccHHHHhC----CCCEEEE--e-c-cCCCCCCCeEEEEEEecCCHHHHHHHHHHHHhhhe
Confidence 88899999976531 2221 2111112 4443322 2 1 12356788899999999999999999999999999
Q ss_pred Eec
Q 013241 391 ITG 393 (447)
Q Consensus 391 i~G 393 (447)
++|
T Consensus 389 ~~~ 391 (391)
T 1kjq_A 389 VQG 391 (391)
T ss_dssp EEC
T ss_pred ecC
Confidence 873
No 21
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=100.00 E-value=1.4e-33 Score=291.29 Aligned_cols=315 Identities=15% Similarity=0.192 Sum_probs=220.6
Q ss_pred cCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChh-----------------hHHHHH------------------
Q 013241 69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKD-----------------ALHVKL------------------ 113 (447)
Q Consensus 69 ~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~-----------------~~~~~l------------------ 113 (447)
.+++||||+++|+.+.+++++++++|+.++.++...+.. .+....
T Consensus 17 ~~~~~ili~g~g~~g~~~~~a~~~~G~~v~~v~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~V~~~~e~~~~~ 96 (433)
T 2dwc_A 17 DSAQKILLLGSGELGKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEIEAINLD 96 (433)
T ss_dssp TTCCEEEEESCSHHHHHHHHHHHHTTCEEEEEESSTTCHHHHHSSEEEESCTTCHHHHHHHHHHHCCSEEEECSSCSCHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhcceEEECCCCCHHHHHHHHHHcCCCEEEECcccCCHH
Confidence 346799999999999999999999999988877543321 111111
Q ss_pred -----hccccCH-------------------------------------HHHHHHhhhhCCcEEEEeCCCCCCcCeEEEC
Q 013241 114 -----ADESVCI-------------------------------------EEAVKLADELGFPVMIKATAGGGGRGMRLAK 151 (447)
Q Consensus 114 -----ad~~v~i-------------------------------------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~ 151 (447)
.+.++.+ +++.+++++++||+||||..|+||+|+++|+
T Consensus 97 ~~~~l~~~gi~~~~~~~~~~~~~dK~~~k~~l~~~~gip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~ 176 (433)
T 2dwc_A 97 ALFEFEKDGYFVVPNARATWIAMHRERLRETLVKEAKVPTSRYMYATTLDELYEACEKIGYPCHTKAIMSSSGKGSYFVK 176 (433)
T ss_dssp HHHHHHHTTCCBSSCHHHHHHHHCHHHHHHHHHHTSCCCCCCEEEESSHHHHHHHHHHHCSSEEEEECCC------EEEC
T ss_pred HHHHHHhcCCeeCCCHHHHHHhhCHHHHHHHHHHhcCCCCCCeeEeCCHHHHHHHHHhcCCCEEEEECCCcCCCCeEEEC
Confidence 0111110 5677777889999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeC--CCcEE--EEeeeeeccccccceeeEecCCCCCC
Q 013241 152 EPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK--YGNVV--HFGERDCSIQRRNQKLLEEAPSPALT 227 (447)
Q Consensus 152 ~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~--~g~vv--~l~~r~~s~~~~~~k~~~~~P~~~l~ 227 (447)
+.+|+.++++.+...+.. .+..++|||||+++.|+++.++.+. +|+++ .+...+ .............|++ ++
T Consensus 177 ~~~el~~~~~~~~~~~~~--~~~~~lvEe~i~~g~E~sv~~~~~~~~~G~~~~~~~~~~~-~~~~~~~~~~~~~p~~-l~ 252 (433)
T 2dwc_A 177 GPEDIPKAWEEAKTKARG--SAEKIIVEEHIDFDVEVTELAVRHFDENGEIVTTFPKPVG-HYQIDGDYHASWQPAE-IS 252 (433)
T ss_dssp SGGGHHHHHHC-----------CCEEEEECCCCSEEEEECCEEEECTTSCEEEEEECCEE-EEESSSSEEEEEESCC-CC
T ss_pred CHHHHHHHHHHHHhhccc--CCCCEEEEccCCCCeeEEEEEEecccCCCCEeEEEecccc-eEEEcCEEEEEEcCCC-CC
Confidence 999999999877654211 2478999999994499999999875 67742 222111 1111222233345877 99
Q ss_pred HHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccc--hhhhhcCCCHHHHHHHHHcCCCCCCC--
Q 013241 228 PELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHP--VTEMISSVDLIEEQIHVAMGGKLRYK-- 303 (447)
Q Consensus 228 ~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~--v~e~~~GiDl~~~~i~~a~G~~l~~~-- 303 (447)
++..+++.+.+.++++++||.|++++||+++++ ++||+|+|||++++.. +....+|+|+++++++.++|.+++..
T Consensus 253 ~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~-~~~viEiN~R~~~~~~~~~~~~~~g~~~~~~~~~~~~G~~l~~~~~ 331 (433)
T 2dwc_A 253 EKAEREVYRIAKRITDVLGGLGIFGVEMFVKGD-KVWANEVSPRPHDTGMVTLASHPPGFSEFALHLRAVLGLPIPGEWV 331 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSEECEEEEEEETT-EEEEEEEESSCCGGGGGHHHHSCTTCSHHHHHHHHHHTCCCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC-cEEEEEEeCCcCCCcceehhHhccCCCHHHHHHHHHcCCCCCcccc
Confidence 999999999999999999999999999999977 6999999999998743 44556799999999999999988631
Q ss_pred --ccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHHHH
Q 013241 304 --QEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIER 381 (447)
Q Consensus 304 --~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~ 381 (447)
+.++...++++++++++++|. ..|....+..+ ...|++.+. ++.+ ..+.+++++|+|+++|+|+++|+++
T Consensus 332 ~~~~~~~~~~~a~~~~v~~~~~~--~~~~i~g~~~~--~~~pg~~v~--~~~~--~~~~~~~~lg~v~~~g~~~~ea~~~ 403 (433)
T 2dwc_A 332 DGYRLFPMLIPAATHVIKAKVSG--YSPRFRGLVKA--LSVPNATVR--LFGK--PEAYVGRRLGIALAWDKDVEVAKRK 403 (433)
T ss_dssp TTEEEECCSSCEEEEEEECSSCE--ESCEEECHHHH--TTSTTEEEE--ECCC--SEECTTCEEEEEEEECSSHHHHHHH
T ss_pred cccccccccccEEEEEEEcCCCC--cCcCcchHHHH--hhCCCcEEE--EecC--CCCCCCCeEEEEEEEeCCHHHHHHH
Confidence 123456778999999998753 12221111111 123444332 2211 1235678899999999999999999
Q ss_pred HHHhhhccEEecccc
Q 013241 382 MKRALNDTIITGVPT 396 (447)
Q Consensus 382 ~~~al~~~~i~G~~t 396 (447)
+.++++.+.++|..-
T Consensus 404 ~~~~~~~i~~~~~~~ 418 (433)
T 2dwc_A 404 AEMVAHMIELRTRSS 418 (433)
T ss_dssp HHHHHHTCEEECTTS
T ss_pred HHHHHhheEEEeecc
Confidence 999999999998664
No 22
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=100.00 E-value=1.5e-33 Score=285.13 Aligned_cols=286 Identities=19% Similarity=0.280 Sum_probs=220.6
Q ss_pred EEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhcc----------------ccCH----------------
Q 013241 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE----------------SVCI---------------- 120 (447)
Q Consensus 73 kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~----------------~v~i---------------- 120 (447)
||||+++|..+..++++++++|+.++.+....+. ....+++. .+..
T Consensus 1 ~iliiG~g~~g~~~~~a~~~~G~~v~~~~~~~~~--~~~~~a~~~~~~~~d~~~l~~~~~~~d~v~~~~e~~~~~~~~~l 78 (369)
T 3aw8_A 1 MIGILGGGQLGRMLALAGYPLGLSFRFLDPSPEA--CAGQVGELVVGEFLDEGALLRFAEGLALVTYEFENVPVEAARRL 78 (369)
T ss_dssp CEEEECCSHHHHHHHHHHTTBTCCEEEEESCTTC--GGGGTSEEEECCTTCHHHHHHHHTTCSEEEECCTTCCHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC--hHHHhhceEecCCCCHHHHHHHHhCCCEEEECCCCcCHHHHHHH
Confidence 6899999999999999999999988877654322 11112221 0100
Q ss_pred ------------------------------------------HHHHHHhhhhCCcEEEEeCCCC-CCcCeEEECCHHHHH
Q 013241 121 ------------------------------------------EEAVKLADELGFPVMIKATAGG-GGRGMRLAKEPDEFV 157 (447)
Q Consensus 121 ------------------------------------------~e~~~~~~~ig~PvVvKP~~g~-Gg~Gv~~v~~~~el~ 157 (447)
+++.++++++|||+|+||..|+ ||+|+++|++.+|+.
T Consensus 79 ~~~g~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~ 158 (369)
T 3aw8_A 79 EGRLPLYPPAKALEVAQDRLREKTFFQGLGVPTPPFHPVDGPEDLEEGLKRVGLPALLKTRRGGYDGKGQALVRTEEEAL 158 (369)
T ss_dssp HHHSCBSSCHHHHHHHTCHHHHHHHHHHHTCCCCCEEEESSHHHHHHHHTTTCSSEEEEECCC------EEEECSHHHHH
T ss_pred HHcCCcCCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeeCCHHHHHHHHHHcCCCEEEEEcCCCCCcceEEEECCHHHHH
Confidence 6777888889999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCHHHHHHHHHH
Q 013241 158 KLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDA 237 (447)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~~~~~~l~~~ 237 (447)
++++.+ ++..+++||||++++|++++++.|++|+++.++.. +..++.+......+|++.++++..+++.+.
T Consensus 159 ~~~~~~--------~~~~~lvEe~i~~g~e~sv~~~~d~~G~~~~~~~~-~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~ 229 (369)
T 3aw8_A 159 EALKAL--------GGRGLILEGFVPFDREVSLLAVRGRTGEVAFYPLV-ENRHWGGILRLSLAPAPGASEALQKKAEAY 229 (369)
T ss_dssp HHHTTT--------CSSSEEEEECCCCSEEEEEEEEECTTSCEEECCCE-EEEEETTEEEEEEESCTTCCHHHHHHHHHH
T ss_pred HHHHhc--------CCCcEEEEEcCCCCEEEEEEEEECCCCCEEEECCe-eeeeeCCEEEEEECCCCCCCHHHHHHHHHH
Confidence 887653 35789999999944999999999988888765433 344455555567788877899999999999
Q ss_pred HHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEE
Q 013241 238 AVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECR 317 (447)
Q Consensus 238 a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~r 317 (447)
+.++++++||+|++++||++++ |++||+|+|||+++++..+...+|+|+++.+++.++|.+++... ..+++++++
T Consensus 230 a~~~~~~lg~~G~~~vd~~~~~-~~~~viEiN~R~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~~----~~~~~~~~~ 304 (369)
T 3aw8_A 230 ALRAMEALDYVGVLALEFFQVG-EELLFNEMAPRVHNSGHWTIEGAETSQFENHLRAVLGLPLGSTA----PRGQSAMVN 304 (369)
T ss_dssp HHHHHHHHTCCEEEEEEEEEET-TEEEEEEEESSCCGGGTTHHHHBSSCHHHHHHHHHHTCCCCCCC----BCSEEEEEE
T ss_pred HHHHHHHCCCeeEEEEEEEEEC-CcEEEEEEeCCcCCccceeeeeecCCHHHHHHHHHcCCCCCCcc----ccccEEEEE
Confidence 9999999999999999999998 77999999999999877788899999999999999999886432 345688999
Q ss_pred EeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhhccE
Q 013241 318 INAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTI 390 (447)
Q Consensus 318 i~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~ 390 (447)
+++++| + +..+.. .|++ +.+++.+ .+++ ++++|+|+++|+|+++|+++++++++.+.
T Consensus 305 ~~~~~~--------~-~~~~~~--~p~~--~~~~~g~-~~~~--~~~lg~v~~~g~~~~ea~~~~~~~~~~i~ 361 (369)
T 3aw8_A 305 LIGEKP--------P-FAEVLK--VEGA--HLHWYGK-AVRP--GRKVGHITLRRDGLKALEEGLARLSRLVS 361 (369)
T ss_dssp EESCCC--------C-HHHHHT--STTE--EEEECCC-CCCT--TCEEEEEEEEESSHHHHHHHHHHHHTTSS
T ss_pred EeCCCc--------h-HHHhcc--CCCc--EEEEecC-CCCC--CCeEEEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 998752 1 111211 2344 3344533 3333 46799999999999999999999999876
No 23
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=100.00 E-value=3.5e-33 Score=280.85 Aligned_cols=284 Identities=15% Similarity=0.184 Sum_probs=217.9
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEecc--------------------------------------------Ch
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI--------------------------------------------DK 106 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~--------------------------------------------dk 106 (447)
|+||+|+++|+.+..++.+++++|+.+....... ||
T Consensus 1 Mk~igilGgGqlg~m~~~aa~~lG~~v~~~~~~a~~~~~~l~~d~it~e~e~v~~~~l~~l~~~~~v~p~~~a~~~~~DK 80 (355)
T 3eth_A 1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTRQLARHPAFVNRDVFPIIADR 80 (355)
T ss_dssp CCEEEEESCSHHHHHHHHHHGGGTCEEEEECTTCCGGGCCCTTSEEEESCSCCCCCHHHHHHHTCTTBTTTTHHHHHHSH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEECCCCCCCceEEcccCCEEEECcCCcCHHHHHHHHhcCCcCCCHHHHHHhcCH
Confidence 5789999999999999999999999873211110 11
Q ss_pred hhHHHHHhccccCH---------HHHHHHhhhhCCcEEEEeCCC-CCCcCeEEECC--HHHHHHHHHHHHHHHHHhcCCC
Q 013241 107 DALHVKLADESVCI---------EEAVKLADELGFPVMIKATAG-GGGRGMRLAKE--PDEFVKLLQQAKSEAAAAFGND 174 (447)
Q Consensus 107 ~~~~~~lad~~v~i---------~e~~~~~~~ig~PvVvKP~~g-~Gg~Gv~~v~~--~~el~~~~~~~~~~~~~~~~~~ 174 (447)
..++..+.+.++++ +++.++++++|||+||||..+ ++|+|+++|++ .+|+.+++ ++
T Consensus 81 ~~~k~~l~~~GIptp~~~~v~~~~e~~~~~~~~G~P~VvKp~~~G~~GkGv~~v~~~~~~el~~a~----------~~-- 148 (355)
T 3eth_A 81 LTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAEC----------YG-- 148 (355)
T ss_dssp HHHHHHHHHTTCCBCCEEEECCGGGHHHHHHHHCSEEEEEESSSCCTTTTEEEEETTCGGGSCGGG----------TT--
T ss_pred HHHHHHHHHCccCCCCEEEECCHHHHHHHHHHcCCCEEEEecCCCCCCCeEEEEcCCCHHHHHHHh----------hC--
Confidence 11111111222221 778888899999999999985 78899999999 99987642 33
Q ss_pred cEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEE
Q 013241 175 GVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVE 254 (447)
Q Consensus 175 ~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vE 254 (447)
.+++|+||++.+|+++.+++|.+|++..++..+ .+++.+.......|+ .++++..+++.+++.+++++|||+|++++|
T Consensus 149 ~vivEe~I~~~~Eisv~v~~~~~G~~~~~p~~e-~~~~~g~~~~~~~pa-~l~~~~~~~~~~~a~~i~~aLg~~G~~~vE 226 (355)
T 3eth_A 149 ECIVEQGINFSGEVSLVGARGFDGSTVFYPLTH-NLHQDGILRTSVAFP-QANAQQQARAEEMLSAIMQELGYVGVMAME 226 (355)
T ss_dssp TEEEEECCCCSEEEEEEEEECTTSCEEECCCEE-EEEETTEEEEEEECS-SCCHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CEEEEEccCCCcEEEEEEEEcCCCCEEEECCEE-EEeeCCeEEEEECCC-CCCHHHHHHHHHHHHHHHHHCCCeeEEEEE
Confidence 699999999779999999999999887664433 234444333334555 499999999999999999999999999999
Q ss_pred EEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCccccCCCCce
Q 013241 255 FLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRI 334 (447)
Q Consensus 255 f~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i 334 (447)
|+++++ ++||+|+|||++++++++..++++|+++++++.++|.|++... ....+++.++..++. .
T Consensus 227 f~~~~~-~~~v~EinpR~~~sg~~t~~~~~~s~fe~~~ra~~G~pl~~~~----~~~~~~m~nilg~~~----------~ 291 (355)
T 3eth_A 227 CFVTPQ-GLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPV----VNNPSVMINLIGSDV----------N 291 (355)
T ss_dssp EEEETT-EEEEEEEESSCCGGGTTHHHHSSSCHHHHHHHHHTTCCCCCCC----CCSCEEEEEEESCCC----------C
T ss_pred EEEECC-cEEEEEeeCCCCCCccEEeeeecCCHHHHHHHHHcCCCCCCcc----ccCceEEEEEecchH----------H
Confidence 999974 6999999999999999999999999999999999999985432 345578888887541 1
Q ss_pred eEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhhccE
Q 013241 335 TAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTI 390 (447)
Q Consensus 335 ~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~ 390 (447)
..+. ..|++. .++|.. ...+ ++++|+|.+.|+|.+++++++.++.+.+.
T Consensus 292 ~~~~--~~p~~~--~~~ygk-~~r~--~rkmGhv~~~~~~~~~~~~~~~~~~~~~~ 340 (355)
T 3eth_A 292 YDWL--KLPLVH--LHWYDK-EVRP--GRKVGHLNLTDSDTSRLTATLEALIPLLP 340 (355)
T ss_dssp GGGG--GSTTCE--EEECCC-CCCT--TCEEEEEEEECSCHHHHHHHHHHHGGGSC
T ss_pred HHHH--hCCCCE--EEEcCC-CCCC--CCeeEEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 2221 234444 345644 5555 67899999999999999999999988763
No 24
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=100.00 E-value=3.5e-33 Score=281.79 Aligned_cols=295 Identities=15% Similarity=0.152 Sum_probs=184.6
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccc------------cCH------------------
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADES------------VCI------------------ 120 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~------------v~i------------------ 120 (447)
|+||||+++|+.+..++++++++|+.++.+....+. ....++++. +..
T Consensus 1 M~~Ililg~g~~~~~~~~a~~~~G~~v~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~d~v~~~~e~~~~~~~~~l~~ 78 (365)
T 2z04_A 1 MLTVGILGGGQLGWMTILEGRKLGFKFHVLEDKENA--PACRVADRCFRTGQISEFVDSCDIITYEFEHIKDEVLEKCES 78 (365)
T ss_dssp -CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSSSC--HHHHHSSEEECGGGHHHHHHHCSEEEESSSCCCHHHHHHHTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC--chhhhccceeeHHHHHHHhhcCCEEEECCCCCcHHHHHHHhh
Confidence 589999999999999999999999998777644332 222222211 000
Q ss_pred -------------------------------------HHHHHHhhhhCCcEEEEeCCCC-CCcCeEEECCHHHHHHHHHH
Q 013241 121 -------------------------------------EEAVKLADELGFPVMIKATAGG-GGRGMRLAKEPDEFVKLLQQ 162 (447)
Q Consensus 121 -------------------------------------~e~~~~~~~ig~PvVvKP~~g~-Gg~Gv~~v~~~~el~~~~~~ 162 (447)
+++.+++++++||+|+||..|+ ||+|++++++.+|+.++++.
T Consensus 79 ~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~ 158 (365)
T 2z04_A 79 KLIPNPQALYVKKSRIREKLFLKKHGFPVPEFLVIKRDEIIDALKSFKLPVVIKAEKLGYDGKGQYRIKKLEDANQVVKN 158 (365)
T ss_dssp TBSSCTHHHHHHTCHHHHHHHHHTTTCCCCCEEEC--------------CEEEECC------------------------
T ss_pred hcCCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEEcHHHHHHHHHhcCCCEEEEEcCCCcCCCCeEEECCHHHHHHHHHH
Confidence 3555566778999999999999 99999999999999988876
Q ss_pred HHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCHHHHHHHHHHHHHHH
Q 013241 163 AKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAA 242 (447)
Q Consensus 163 ~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~ 242 (447)
+. ++..+++||||++++|+++.++.|++|+++.++..++. ++.+.......|++ + .+++.+.+.+++
T Consensus 159 ~~-------~~~~~lvEe~i~~g~e~sv~~~~d~~G~~~~~~~~~~~-~~~~~~~~~~~p~~-~----~~~~~~~~~~~~ 225 (365)
T 2z04_A 159 HD-------KEESFIIEEFVKFEAEISCIGVRDREGKTYFYPQPFNK-HEEGILIYNYVPYA-K----LKEAEEITKRLM 225 (365)
T ss_dssp -------------CEEEECCCCSEEEEEEEEECTTCCEEECCEEEEE-EETTEEEEEEEEEE-C----CHHHHHHHHHHH
T ss_pred hc-------cCCCEEEEccCCCCEEEEEEEEECCCCCEEEECCEEEE-EeCCEeEEEECCHh-H----HHHHHHHHHHHH
Confidence 53 24789999999944999999999988888777655432 23333333456665 3 567889999999
Q ss_pred HHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCC
Q 013241 243 ASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAED 322 (447)
Q Consensus 243 ~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~ 322 (447)
+++||+|++++||+++++|++||+|+|||+++....+...+|+|+++.+++.++|.+++..+. ...+.++++++++
T Consensus 226 ~~lg~~G~~~vd~~~~~~g~~~~iEiN~R~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~----~~~~~~~~~~~~~ 301 (365)
T 2z04_A 226 ELLDIVGVFTVEFFLLKDGRVLINEFAPRVHNTGHWTLDGAYTSQFENLLRAITEMPLGSTEL----KLPSGMVNILGKS 301 (365)
T ss_dssp HHTTCCEEEEEEEEECTTSCEEEEEEESSCCGGGTTHHHHBSSCHHHHHHHHHTTCCCCCCCB----SSCEEEEEEESCC
T ss_pred HHcCCEEEEEEEEEEeCCCcEEEEEeccCcCCCceEEeeccccCHHHHHHHHHhCCCCCCccc----cCCEEEEEEECCc
Confidence 999999999999999988999999999999985444677899999999999999999865431 2347788998865
Q ss_pred CCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhhccEEeccccC
Q 013241 323 PFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTT 397 (447)
Q Consensus 323 p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G~~tn 397 (447)
+. | +.+..+. ..|++++ +++ |..+. .++++|+|+++|+|+++|+++++++++.+.++|++-+
T Consensus 302 ~~----~--~~~~~~~--~~~~~~~--~~~-g~~~~--~~~~lg~v~~~g~~~~~a~~~~~~~~~~i~~~~~~~~ 363 (365)
T 2z04_A 302 YE----E--IPLKEIL--SVEGAKL--YWY-GKEKK--PRRKVGHVNVVGRSKEEVVEKVERVFTLLKGSREKLP 363 (365)
T ss_dssp GG----G--SCHHHHT--TSTTEEE--EEC-CCCCC--TTCEEEEEEEECSSHHHHHHHHHHHHHC---------
T ss_pred cc----c--chHHHHh--cCCCCEE--Eec-CCCCC--CCCeEEEEEEecCCHHHHHHHHHHHHHHhhhccCCCC
Confidence 31 2 3343332 2356654 344 54333 3778999999999999999999999999999998653
No 25
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=100.00 E-value=5.8e-32 Score=275.56 Aligned_cols=289 Identities=19% Similarity=0.219 Sum_probs=217.2
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccCh-----------------hhHHHHHhc------------------
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK-----------------DALHVKLAD------------------ 115 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk-----------------~~~~~~lad------------------ 115 (447)
-+||+|+++|.++..++++++++|+.++.+....+. ..+.....+
T Consensus 14 ~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~~e~~~~~~~~~ 93 (389)
T 3q2o_A 14 GKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYEFENIDYRCLQW 93 (389)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEESCCCCCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeeccccccHHHHHH
Confidence 479999999999999999999999998877543221 111111111
Q ss_pred ---ccc--------------------------CH---------HHHHHHhhhhCCcEEEEeCCCCC-CcCeEEECCHHHH
Q 013241 116 ---ESV--------------------------CI---------EEAVKLADELGFPVMIKATAGGG-GRGMRLAKEPDEF 156 (447)
Q Consensus 116 ---~~v--------------------------~i---------~e~~~~~~~ig~PvVvKP~~g~G-g~Gv~~v~~~~el 156 (447)
.++ ++ +++.++++++|||+||||..|++ |+|++++++.+|+
T Consensus 94 l~~~g~~~~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el 173 (389)
T 3q2o_A 94 LEKHAYLPQGSQLLSKTQNRFTEKNAIEKAGLPVATYRLVQNQEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADV 173 (389)
T ss_dssp HHHHSCCTTCSHHHHHTTSHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHCSSEEEEESSCCSSSCCEEEESSGGGH
T ss_pred HHhhCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCCCeEEECCHHHH
Confidence 000 00 77888889999999999999975 8999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCHHHHHHHHH
Q 013241 157 VKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGD 236 (447)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~~~~~~l~~ 236 (447)
.++++.+. +.+++||+||+|.+|+++.+++|.+|++..++..+. .++.........|+. ++++..+++.+
T Consensus 174 ~~~~~~~~--------~~~~lvEe~i~g~~E~~v~~~~~~~G~~~~~~~~e~-~~~~g~~~~~~~p~~-l~~~~~~~~~~ 243 (389)
T 3q2o_A 174 DEARKLAN--------AAECILEKWVPFEKEVSVIVIRSVSGETKVFPVAEN-IHVNNILHESIVPAR-ITEELSQKAIA 243 (389)
T ss_dssp HHHHHHHH--------HSCEEEEECCCCSEEEEEEEEECTTCCEEECCCEEE-EEETTEEEEEEESCS-SCHHHHHHHHH
T ss_pred HHHHHhcC--------CCCEEEEecccCceEEEEEEEEcCCCCEEEecCeee-EEcCCceEEEECCCC-CCHHHHHHHHH
Confidence 99887642 378999999998899999999998888877755443 223333334456775 99999999999
Q ss_pred HHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEE
Q 013241 237 AAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIEC 316 (447)
Q Consensus 237 ~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ 316 (447)
.+.++++++|++|++++||+++++|++||+|+|||++++.+++..++|+|+++.+++.++|.+++... ....+++.
T Consensus 244 ~a~~~~~~lg~~G~~~ve~~~~~dg~~~viEiNpR~~~s~~~~~~~~g~~~~~~~~r~~lg~~l~~~~----~~~~~~~~ 319 (389)
T 3q2o_A 244 YAKVLADELELVGTLAVEMFATADGEIYINELAPRPHNSGHYTQDACETSQFGQHIRAICNLPLGETN----LLKPVVMV 319 (389)
T ss_dssp HHHHHHHHTTCCEEEEEEEEECTTSCEEEEEEESSCCGGGTTHHHHBSSCHHHHHHHHHHTCCCCCCC----BCSCEEEE
T ss_pred HHHHHHHHcCCeeEEEEEEEEeCCCCEEEEEeeCCCCCchhHHHHHcCCCHHHHHHHHHcCCCCCCcc----ccCcEEEE
Confidence 99999999999999999999998899999999999999888888999999999999999999986432 23335555
Q ss_pred EEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHHHHHHHhh
Q 013241 317 RINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRAL 386 (447)
Q Consensus 317 ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al 386 (447)
.+...+. + .....+ ...|++.+ ++|......+ .+.+|+|++.|+|.++|+.++..+.
T Consensus 320 ~~~g~~~-----~--~~~~~~--~~~p~~~~--~lygk~~~~~--~r~~G~v~~~~~~~~~a~~~a~~~~ 376 (389)
T 3q2o_A 320 NILGEHI-----E--GVLRQV--NRLTGCYL--HLYGKEEAKA--QRKMGHVNILNDNIEVALEKAKSLH 376 (389)
T ss_dssp EEEHHHH-----H--HHHHTG--GGCTTEEE--EECCCSSCCT--TSEEEEEEEECSSHHHHHHHHHHTT
T ss_pred EEecCch-----h--hHHHHH--HhCCCCEE--EECCCCCCCC--CCeeEEEEEEcCCHHHHHHHHHHhC
Confidence 5554210 0 000111 11345543 3443222333 3459999999999999999988764
No 26
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=100.00 E-value=5.7e-32 Score=274.50 Aligned_cols=297 Identities=20% Similarity=0.231 Sum_probs=214.2
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhH--------------------------------------HHH
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL--------------------------------------HVK 112 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~--------------------------------------~~~ 112 (447)
|+||||+++|..+..++++++++|+.++.+....+.... ...
T Consensus 1 M~~Ililg~g~~g~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~d~v~~~~e~~~~~~~~~ 80 (380)
T 3ax6_A 1 MKKIGIIGGGQLGKMMTLEAKKMGFYVIVLDPTPRSPAGQVADEQIVAGFFDSERIEDLVKGSDVTTYDLEHIDVQTLKK 80 (380)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTGGGSSEEEECCTTCHHHHHHHHHTCSEEEESCSCSCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceEEECCCCCHHHHHHHHhcCCEEEecccCCCHHHHHH
Confidence 479999999999999999999999987766643221100 001
Q ss_pred HhccccCH---------------------------------HHHHHHhhhhCCcEEEEeCCCC-CCcCeEEECCHHHHHH
Q 013241 113 LADESVCI---------------------------------EEAVKLADELGFPVMIKATAGG-GGRGMRLAKEPDEFVK 158 (447)
Q Consensus 113 lad~~v~i---------------------------------~e~~~~~~~ig~PvVvKP~~g~-Gg~Gv~~v~~~~el~~ 158 (447)
+...++++ .+..+++++++||+|+||..|+ ||+|++++++.+|+.+
T Consensus 81 l~~~gi~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~P~vvKp~~~~y~g~Gv~~v~~~~el~~ 160 (380)
T 3ax6_A 81 LYNEGYKIHPSPYTLEIIQDKFVQKEFLKKNGIPVPEYKLVKDLESDVREFGFPVVQKARKGGYDGRGVFIIKNEKDLEN 160 (380)
T ss_dssp HHHTTCEESSCHHHHHHHHSHHHHHHHHHHTTCCCCCEEECSSHHHHHHTTCSSEEEEESCCC-----EEEECSGGGGGG
T ss_pred HHHCCCeECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeEEeCCHHHHHHhcCCCEEEEecCCCCCCCCeEEECCHHHHHH
Confidence 11112211 1111256678999999999999 9999999999999876
Q ss_pred HHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeecc--ccccceeeEecCCCCCCHHHHHHHHH
Q 013241 159 LLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSI--QRRNQKLLEEAPSPALTPELRKAMGD 236 (447)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~--~~~~~k~~~~~P~~~l~~~~~~~l~~ 236 (447)
+++ ..+++||||++++|+++.++.|++|++..+...+ .. ++.+.......|++ ++++..+++.+
T Consensus 161 ~~~------------~~~lvEe~i~~g~e~sv~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~p~~-l~~~~~~~~~~ 226 (380)
T 3ax6_A 161 AIK------------GETYLEEFVEIEKELAVMVARNEKGEIACYPVVE-MYFDEDANICDTVIAPAR-IEEKYSKIARE 226 (380)
T ss_dssp CCC------------SSEEEEECCCEEEEEEEEEEECSSCCEEEEEEEE-EC--------CEEEESCS-SCHHHHHHHHH
T ss_pred Hhc------------CCEEEEeccCCCeeEEEEEEECCCCCEEEECCee-eeecccCCeeEEEECCCC-CCHHHHHHHHH
Confidence 543 6799999999339999999999888877654432 22 23333334567887 89999999999
Q ss_pred HHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEE
Q 013241 237 AAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIEC 316 (447)
Q Consensus 237 ~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ 316 (447)
.+.++++++||.|++++||+++++|++||+|+|||+++++..+...+|+|+++.+++.++|.+++... ..+.+..+
T Consensus 227 ~a~~~~~~lg~~G~~~vd~~~~~~g~~~viEiN~R~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~----~~~~~~~~ 302 (380)
T 3ax6_A 227 IATSVVEALEGVGIFGIEMFLTKQGEILVNEIAPRPHNSGHYTIEACVTSQFEQHIRAIMNLPLGSTE----LLIPAVMV 302 (380)
T ss_dssp HHHHHHHHHTCCEEEEEEEEEETTSCEEEEEEESSCCGGGTHHHHHBSSCHHHHHHHHHTTCCCCCCC----BCSCEEEE
T ss_pred HHHHHHHHCCCeEEEEEEEEEeCCCcEEEEEecCCCCCCceeehhhccccHHHHHHHHHhCCCCCCcc----ccCceEEE
Confidence 99999999999999999999998899999999999999877788899999999999999999886433 12336788
Q ss_pred EEeeCCCCccccC-CCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhhccEEec
Q 013241 317 RINAEDPFKNFRP-GPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITG 393 (447)
Q Consensus 317 ri~ae~p~~~f~p-~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G 393 (447)
++++.+......+ ..| +..+ ..|++++. .+ |..+.. .++.+|+|++.|+|+++|.++++++++.+.++-
T Consensus 303 ~~l~~~~~~~~~~~~~~-~~~~---~~p~~~~~--~~-g~~~~~-~~~~lg~v~~~g~~~~~a~~~~~~~~~~i~~~~ 372 (380)
T 3ax6_A 303 NLLGEEGYYGKPALIGL-EEAL---AIEGLSLH--FY-GKKETR-PYRKMGHFTVVDRDVERALEKALRAKKILKVVS 372 (380)
T ss_dssp EEEBCTTCCBSEEEESH-HHHH---TSTTEEEE--EC-CCSCBC-BTCEEEEEEEECSSHHHHHHHHHHHTTTCEEEE
T ss_pred EEecccccccccccchh-HHHh---cCCCCEEE--ec-CCCCCC-CCCeeEEEEEEeCCHHHHHHHHHHHHhhhhhhc
Confidence 8888654201111 122 3222 23555442 22 333322 346799999999999999999999999998874
No 27
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=9.5e-32 Score=280.59 Aligned_cols=316 Identities=15% Similarity=0.169 Sum_probs=248.5
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCee---EEEeccChhhHHHHHhccccCH---------HHHHHHhhhhCCcEEEEe
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCV---AVYSTIDKDALHVKLADESVCI---------EEAVKLADELGFPVMIKA 138 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~v---av~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~PvVvKP 138 (447)
++-|+. ........+++.++++|++.+ ++..+.||..++..+.+.++++ +++.++++++|||+||||
T Consensus 103 id~Vip-~sE~~l~~~a~~~e~~Gi~g~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~ee~~~~~~~lg~PvVVKP 181 (474)
T 3vmm_A 103 ADAITT-NNELFIAPMAKACERLGLRGAGVQAAENARDKNKMRDAFNKAGVKSIKNKRVTTLEDFRAALEEIGTPLILKP 181 (474)
T ss_dssp CSEEEE-SCGGGHHHHHHHHHHTTCCCSCHHHHHHTTCHHHHHHHHHHTTSCCCCEEEECSHHHHHHHHHHSCSSEEEEE
T ss_pred CCEEEE-CCcccHHHHHHHHHHcCCCCCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHHcCCCEEEEE
Confidence 444444 333334568888999998743 2345689999999999998887 788889999999999999
Q ss_pred CCCCCCcCeEEECCHHHHHHHHHHHHHHHHH-------hcCCCcEEEeeccCCCce-----------EEEE-EEEeCCCc
Q 013241 139 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAA-------AFGNDGVYLEKYVQNPRH-----------IEFQ-VLADKYGN 199 (447)
Q Consensus 139 ~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~-------~~~~~~~lvEefI~G~~e-----------i~v~-vl~d~~g~ 199 (447)
..|+||+|++++++.+|+.++++.+..++.. .++ +.++|||||+|.++ +++. ++.|+++.
T Consensus 182 ~~g~gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~-~~vlVEe~I~G~e~~~~q~~~~~~e~sv~~v~~dg~~~ 260 (474)
T 3vmm_A 182 TYLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFE-APFIAEEFLQGEYGDWYQTEGYSDYISIEGIMADGEYF 260 (474)
T ss_dssp SSCCTTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCS-CSEEEEECCCBCHHHHCSSSSSCSEEEEEEEEETTEEE
T ss_pred CCCCcCceEEEECCHHHHHHHHHHHHHHHhhccccccccCC-CeEEEEeCCCCceeeeeecccccceeEEEEEEECCeEE
Confidence 9999999999999999999999988776543 233 78999999999542 7886 45566666
Q ss_pred EEEEeeeeeccccccceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEe-EEEEEEecCCCEEEEEEeccCCC--cc
Q 013241 200 VVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVG-TVEFLLDERGSFYFMEMNTRIQV--EH 276 (447)
Q Consensus 200 vv~l~~r~~s~~~~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~-~vEf~~d~~G~~~~iEiNpR~~g--~~ 276 (447)
++.+++++|+.+ +++..+.+|++ ++++..++|.+.+.++++++|++|.+ |+||+++++|++||||||||++| ++
T Consensus 261 ~v~i~~~~~~~~--~~~~~~~~Pa~-l~~~~~~~l~~~a~~~~~alG~~g~~~~vef~~~~dg~~~~iEvNpR~~G~~~~ 337 (474)
T 3vmm_A 261 PIAIHDKTPQIG--FTETSHITPSI-LDEEAKKKIVEAAKKANEGLGLQNCATHTEIKLMKNREPGLIESAARFAGWNMI 337 (474)
T ss_dssp EEEEEEECCCBT--TBCCEEEESCC-CCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEEGGGEEEEEEEESSCCSTTHH
T ss_pred EEEEEeeccCCC--ccceEEEECCC-CCHHHHHHHHHHHHHHHHHcCCCCccEEEEEEEcCCCCEEEEEEeCCCCCCchH
Confidence 677788888876 66778889996 99999999999999999999999888 69999998899999999999995 58
Q ss_pred chhhhhcCCCHHHHHHHHHc-CCCCCCCccccc-cceeEEEEEEeeCCCCc--cccCCCC--ceeEEecCC----CCcEE
Q 013241 277 PVTEMISSVDLIEEQIHVAM-GGKLRYKQEDIV-LQGHSIECRINAEDPFK--NFRPGPG--RITAYLPAG----GPFVR 346 (447)
Q Consensus 277 ~v~e~~~GiDl~~~~i~~a~-G~~l~~~~~~~~-~~g~ai~~ri~ae~p~~--~f~p~~g--~i~~~~~~~----~~~vr 346 (447)
++++.++|+|++++++++++ |+++++.+..+. ..+++..|+++.+.+.. ...|... .|..+..|. |..+.
T Consensus 338 ~~~~~~tG~dl~~~~i~~a~~G~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~p~~~~~~~i~~~~~p~~~~~~~~~~ 417 (474)
T 3vmm_A 338 PNIKKVFGLDMAQLLLDVLCFGKDADLPDGLLDQEPYYVADCHLYPQHFKQNGQIPETAEDLVIEAIDIPDGLLKGDTEI 417 (474)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHGGGSCCCSSCCCCCSSEEEEEEECHHHHHHTTSSCTTCEEEEEEEEECCTTCCCTTCEE
T ss_pred HHHHHHHCcCHHHHHHHHHcCCCCCCCCcccccCCCceeEEEEEeccccccccccCCcccceeecceecccceecccceE
Confidence 89999999999999999999 999998887665 35678889888765432 1223322 234444442 22344
Q ss_pred Ee-----eeecCCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhhccEEe
Q 013241 347 MD-----SHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIIT 392 (447)
Q Consensus 347 ~d-----~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~ 392 (447)
++ .+....+.+...|||.++-++ .|.++.+..+.++++++...+.
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 467 (474)
T 3vmm_A 418 VSFSAAAPGTSVDLTLFEAFNSIAAFEL-KGSNSQDVAESIRQIQQHAKLT 467 (474)
T ss_dssp EEEEECCTTEEECTTSCGGGCCCEEEEE-EESCHHHHHHHHHHHHHHCEEE
T ss_pred eeccCCCCCceEEEEeehhccCceeEEe-ccccHHHHHHHHHHHHHhhhhh
Confidence 43 234445667778999666665 9999999999999999988765
No 28
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=100.00 E-value=1.5e-31 Score=274.70 Aligned_cols=275 Identities=14% Similarity=0.151 Sum_probs=203.9
Q ss_pred HHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHH
Q 013241 87 IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSE 166 (447)
Q Consensus 87 ~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~ 166 (447)
.+.++++|||++......+. +++.+++++++||+||||..|+||+||++|++.+|+.++++.+...
T Consensus 111 k~~l~~~gip~p~~~~~~~~--------------~e~~~~~~~~g~PvvvKp~~~~gg~Gv~~v~~~~el~~a~~~~~~~ 176 (412)
T 1vkz_A 111 KRFMKKYGIRTARFEVAETP--------------EELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIG 176 (412)
T ss_dssp HHHHHHTTCCCCCEEEESSH--------------HHHHHHHTTSCSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCEEEECCH--------------HHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhh
Confidence 45566777777776666666 8888889999999999999999999999999999999999877543
Q ss_pred HHHhcCC-CcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeecccccc--------ceeeEecCCCCCCHHHHHHHHHH
Q 013241 167 AAAAFGN-DGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRN--------QKLLEEAPSPALTPELRKAMGDA 237 (447)
Q Consensus 167 ~~~~~~~-~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~--------~k~~~~~P~~~l~~~~~~~l~~~ 237 (447)
. ..|++ ..++|||||+| +|++++++.|+. .++.+. ..+..++.+ ......+|++ +++++.+++.++
T Consensus 177 ~-~~~g~~~~vlvEe~i~G-~E~sv~~~~dg~-~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~P~~-l~~~~~~~i~~~ 251 (412)
T 1vkz_A 177 E-LIKGVKGPVVIDEFLAG-NELSAMAVVNGR-NFVILP-FVRDYKRLMDGDRGPNTGGMGSWGPVE-IPSDTIKKIEEL 251 (412)
T ss_dssp S-SSTTCCSCEEEEECCCS-EEEEEEEEEETT-EEEECC-CCEECCEEETTTEEEECSCSEEEECCC-CCHHHHHHHHHH
T ss_pred c-cccCCCCeEEEEECCcC-cEEEEEEEECCC-EEEEee-eeEeeeeccCCCCCCCCCCceEEECCC-CCHHHHHHHHHH
Confidence 1 02443 48999999998 999999999754 333332 112222211 1233668988 999999999999
Q ss_pred HHHHHHHc-----CCccEeEEEEEEecCCCEEEEEEeccCCCc-cchhhhhcCCCHHHHHHHHHcCCCCCCCccccccce
Q 013241 238 AVAAAASI-----GYIGVGTVEFLLDERGSFYFMEMNTRIQVE-HPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQG 311 (447)
Q Consensus 238 a~~i~~al-----g~~G~~~vEf~~d~~G~~~~iEiNpR~~g~-~~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g 311 (447)
+.+++++| +|.|++++||+++++| +||+|+|||+++. +..++..+|+|+.+.+++++.|...+. .. ..+
T Consensus 252 a~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~~viEiN~R~g~~~~~~~~~~~g~d~~~~~~~~~~g~l~~~---~~-~~~ 326 (412)
T 1vkz_A 252 FDKTLWGVEKEGYAYRGFLYLGLMLHDGD-PYILEYNVRLGDPETEVIVTLNPEGFVNAVLEGYRGGKMEP---VE-PRG 326 (412)
T ss_dssp HHHHHHHHHHTTCCCEEEEEEEEEEETTE-EEEEEEESSCCTTHHHHHHHHCHHHHHHHHHHHHHTSCCCC---CC-CCS
T ss_pred HHHHHHHHHhcCCCcEEEEEEEEEEECCC-cEEEEEecCCCCCcceeehhhcCCCHHHHHHHHhcCCCccc---cc-cCC
Confidence 99999999 8899999999999888 9999999999975 556677799999999999998853221 11 124
Q ss_pred eEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcc-----cCCCCCccceEEEEEcCCHHHHHHHHHHhh
Q 013241 312 HSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYV-----VPPSYDSLLGKLIVWAPTREKAIERMKRAL 386 (447)
Q Consensus 312 ~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~-----v~~~~ds~lg~vi~~g~~~~eA~~~~~~al 386 (447)
++ .++++++++. .+.|.+|.+..+..| + .++. .|.. +... ++++|+|+++|+|+++|++++++++
T Consensus 327 ~a-~~~~l~~~~~-~~~~~~g~~i~l~~~-~-~v~~-----~g~~~~~~~~~~~-~~~vg~v~~~g~~~~ea~~~~~~~~ 396 (412)
T 1vkz_A 327 FA-VDVVLAARGY-PDAPEKGKEITLPEE-G-LIFF-----AGVAEKDGKLVTN-GGRVLHCMGTGETKEEARRKAYELA 396 (412)
T ss_dssp EE-EEEEEECTTT-TTSCCCCCBCBCCSS-C-CEEE-----SSEEEETTEEEEC-SSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred eE-EEEEEecCCC-CCCCCCCCEeeeCCC-C-cEEE-----CcccccCCeEEeC-CCcEEEEEEeCCCHHHHHHHHHHHh
Confidence 44 5777776532 133556664333222 2 2322 2332 3333 4569999999999999999999999
Q ss_pred hccEEeccc
Q 013241 387 NDTIITGVP 395 (447)
Q Consensus 387 ~~~~i~G~~ 395 (447)
+++.++|+-
T Consensus 397 ~~i~~~g~~ 405 (412)
T 1vkz_A 397 EKVHFEGKT 405 (412)
T ss_dssp HHCBCTTCB
T ss_pred cceeeCCCE
Confidence 999998853
No 29
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=100.00 E-value=7.8e-32 Score=273.66 Aligned_cols=286 Identities=17% Similarity=0.246 Sum_probs=218.8
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH-----------------------------
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------------------------- 120 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------------------------- 120 (447)
+.+||+|+++|+++..++++++++|+.++.+....+ ++...++|+.+..
T Consensus 11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~--~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~~~E~~~~~~ 88 (377)
T 3orq_A 11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED--CPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFENISAQQ 88 (377)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT--CTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEESSTTSCHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC--ChhhhhCCEEEECCCCCHHHHHHHHHhCCcceecccccCHHH
Confidence 468999999999999999999999999887754332 2222333322110
Q ss_pred ----------------------------------------------HHHHHHhhhhCCcEEEEeCCCC-CCcCeEEECCH
Q 013241 121 ----------------------------------------------EEAVKLADELGFPVMIKATAGG-GGRGMRLAKEP 153 (447)
Q Consensus 121 ----------------------------------------------~e~~~~~~~ig~PvVvKP~~g~-Gg~Gv~~v~~~ 153 (447)
+++.++++++|||+|+||..|+ +|+|++++++.
T Consensus 89 l~~l~~~~~v~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~g~P~vvKp~~gg~~g~Gv~~v~~~ 168 (377)
T 3orq_A 89 LKLLCEKYNIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKESTDIDKAIETLGYPFIVKTRFGGYDGKGQVLINNE 168 (377)
T ss_dssp HHHHHHHSCCTTTTHHHHHHHSHHHHHHHHHHTTCCBCCEEEECSSTHHHHHHHHTCSSEEEEESSSCCTTTTEEEECST
T ss_pred HHHHhhhcCCCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHHcCCCEEEEeCCCCCCCCCeEEECCH
Confidence 7788888899999999999998 89999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCHHHHHH
Q 013241 154 DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKA 233 (447)
Q Consensus 154 ~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~~~~~~ 233 (447)
+|+.++++.+. +.++++|+||+|.+|+++.++++.+|++..++..+. ..+.+.......|+. +++ .++
T Consensus 169 ~el~~a~~~~~--------~~~~ivEe~i~g~~E~sv~~~~~~~g~~~~~~~~e~-~~~~g~~~~~~~Pa~-l~~--~~~ 236 (377)
T 3orq_A 169 KDLQEGFKLIE--------TSECVAEKYLNIKKEVSLTVTRGNNNQITFFPLQEN-EHRNQILFKTIVPAR-IDK--TAE 236 (377)
T ss_dssp TSHHHHHHHHT--------TSCEEEEECCCEEEEEEEEEEECGGGCEEECCCEEE-EEETTEEEEEEESCS-SCC--HHH
T ss_pred HHHHHHHHhcC--------CCcEEEEccCCCCEEEEEEEEEeCCCCEEEECCEeE-EEECCEEEEEECCCC-CCH--HHH
Confidence 99999887642 378999999999889999999888888877655443 222232234456775 666 789
Q ss_pred HHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCCCC-Ccccccccee
Q 013241 234 MGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRY-KQEDIVLQGH 312 (447)
Q Consensus 234 l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l~~-~~~~~~~~g~ 312 (447)
+.+.+.+++++|||.|++++||+++++|++||+|+|||++++..++...+++++++.+++.++|.|++. .. ....
T Consensus 237 ~~~~a~~i~~~lg~~G~~~ve~~~~~~g~~~v~EinpR~~~sg~~t~~~~~~s~f~~~~ra~~G~pl~~~~~----~~~~ 312 (377)
T 3orq_A 237 AKEQVNKIIQSIHFIGTFTVEFFIDSNNQLYVNEIAPRPHNSGHYSIEACDYSQFDTHILAVTGQSLPNSIE----LLKP 312 (377)
T ss_dssp HHHHHHHHHTTSCCCEEEEEEEEEETTCCEEEEEEESSCCGGGTTHHHHBSSCHHHHHHHHHTTCCCCSCCC----BSSC
T ss_pred HHHHHHHHHHHCCCeEEEEEEEEEeCCCcEEEEEeeCCcCCCCcEeehhcCCCHHHHHHHHHcCCCCCcccc----cccc
Confidence 999999999999999999999999988899999999999998777778999999999999999999864 22 3445
Q ss_pred EEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHHHHHHHhh
Q 013241 313 SIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRAL 386 (447)
Q Consensus 313 ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al 386 (447)
+++..+..++. + +.-..+.. .|++. .++|......+ ++.+|+|.+.|+|.+++++++..-+
T Consensus 313 ~~m~n~lg~~~-----~--~~~~~~~~--~~~~~--~~~ygk~~~~~--~rkmGhv~~~~~~~~~~~~~~~~~~ 373 (377)
T 3orq_A 313 AVMMNLLGKDL-----D--LLENEFNE--HPEWH--LHIYGKSERKD--SRKMGHMTVLTNDVNQTEQDMYAKF 373 (377)
T ss_dssp EEEEEEEHHHH-----H--HHGGGGGG--CGGGC--EEECCCSSCCT--TSEEEEEEEECSCHHHHHHHHHHHT
T ss_pred EEEEEEeCccc-----h--hHHHHHhh--CCCCE--EEECCCCCCCC--CCeeEEEEEEcCCHHHHHHHhHHhh
Confidence 77887776421 0 10011111 23443 34454434445 5789999999999999999987644
No 30
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=100.00 E-value=3.7e-31 Score=272.37 Aligned_cols=304 Identities=15% Similarity=0.197 Sum_probs=223.0
Q ss_pred CcEEEEecCcHHHH--HHHHHHHHcCCCee-----EEEeccChhhHHHHHhccccCH---------HHHHHHhhhhCCcE
Q 013241 71 QEKILVANRGEIAV--RVIRTAHEMGIPCV-----AVYSTIDKDALHVKLADESVCI---------EEAVKLADELGFPV 134 (447)
Q Consensus 71 ~~kvLianrgeia~--ri~r~~~~lGi~~v-----av~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~Pv 134 (447)
++-|+. ..|... .+++.++++|+++. ++..+.||..++..+.+.++++ +++.+++++++||+
T Consensus 63 ~d~v~~--~~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~Pv 140 (424)
T 2yw2_A 63 VDFTIV--GPEAPLVEGIVDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTARYEVFTDFEKAKEYVEKVGAPI 140 (424)
T ss_dssp CSEEEE--CSHHHHHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHHCSSE
T ss_pred CCEEEE--CCchHHHHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHHcCCcE
Confidence 344443 356654 67888899999854 2234579999999999998876 77888888999999
Q ss_pred EEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcC--CCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeecccc
Q 013241 135 MIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQR 212 (447)
Q Consensus 135 VvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~ 212 (447)
||||..|+||+|+++|++.+|+.++++.+... ..|+ +..++|||||+| +|+++.++.|+. .+..+.. ++
T Consensus 141 vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~--~~~g~~~~~~lvEe~i~g-~E~sv~~~~~G~-~~~~~~~-----~~ 211 (424)
T 2yw2_A 141 VVKADGLAAGKGAVVCETVEKAIETLDRFLNK--KIFGKSSERVVIEEFLEG-EEASYIVMINGD-RYVPLPT-----SQ 211 (424)
T ss_dssp EEEESSCCTTCSEEEESSHHHHHHHHHHHHTS--CTTGGGGSSEEEEECCCS-EEEEEEEEEETT-EEEECCC-----BE
T ss_pred EEEeCCCCCCCCEEEECCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCCC-cEEEEEEEEcCC-EEEeecc-----ee
Confidence 99999999999999999999999998876542 1233 268999999998 899999998643 2332221 22
Q ss_pred cccee------------eEecCCCCCCHHHHHHHH-HHHHHHHHHc-----CCccEeEEEEEEecCCCEEEEEEeccCCC
Q 013241 213 RNQKL------------LEEAPSPALTPELRKAMG-DAAVAAAASI-----GYIGVGTVEFLLDERGSFYFMEMNTRIQV 274 (447)
Q Consensus 213 ~~~k~------------~~~~P~~~l~~~~~~~l~-~~a~~i~~al-----g~~G~~~vEf~~d~~G~~~~iEiNpR~~g 274 (447)
++++. ...+|++.+++++.+++. +++.++++++ +|.|++++||+++++| +||+|+|||+++
T Consensus 212 ~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~~viEiN~R~g~ 290 (424)
T 2yw2_A 212 DHKRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVERVIKGLKEEGIYYRGFLYAGLMITKEG-PKVLEFNVRLGD 290 (424)
T ss_dssp ECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHHTCCCEEEEEEEEEEETTE-EEEEEEESSCCT
T ss_pred eccccccCCCCCCCCCCeeECCCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-cEEEEEecCCCC
Confidence 22222 234787668999988884 6787777765 7889999999999988 999999999987
Q ss_pred c-cchhhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCccccCCCCc-eeEEecC-CCCcEEEeeee
Q 013241 275 E-HPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGR-ITAYLPA-GGPFVRMDSHV 351 (447)
Q Consensus 275 ~-~~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~-i~~~~~~-~~~~vr~d~~~ 351 (447)
. +..++..+|+|+++++++++.|. ++.. ....++++.++++++++.. .|..|. |..+..+ ..|++++.
T Consensus 291 ~~~~~i~~~~g~d~~~~~~~~~~g~-l~~~---~~~~~~a~~~~~~~~g~~~--~~~~g~~i~~~~~~~~~~~~~~~--- 361 (424)
T 2yw2_A 291 PEAQPILMRVKNDFLETLLNFYEGK-DVHI---KEDERYALDVVLASRGYPE--KPETGKIIHGLDYLKSMEDVVVF--- 361 (424)
T ss_dssp TTHHHHHHTBCSCHHHHHHHHHTTC-CCCC---CBCSSEEEEEEEECTTTTS--SCCCCCBCBCHHHHHTSTTEEEE---
T ss_pred cHHHHHHHHhCCCHHHHHHHHHcCC-CCcc---cccCCcEEEEEEecCCCCC--CCCCCCcCcCcccccCCCCeEEE---
Confidence 5 44556679999999999999996 3311 1123688899998875422 245554 4444221 23566542
Q ss_pred cCCcccC----CCCCccceEEEEEcCCHHHHHHHHHHhhhccEEeccc
Q 013241 352 YPDYVVP----PSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVP 395 (447)
Q Consensus 352 ~~G~~v~----~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G~~ 395 (447)
+.|..+. ...+.++|+|+++|+|+++|+++++++++++.++|..
T Consensus 362 ~~g~~~~~~~~~~~~~r~~~v~~~g~~~~~a~~~~~~~~~~i~~~g~~ 409 (424)
T 2yw2_A 362 HAGTKKEGNFTVTSGGRVLNVCAYGKTLKEAKERAYEAIRYVCFEGMH 409 (424)
T ss_dssp ESSEEEETTEEEECSSEEEEEEEEESSHHHHHHHHHHHHTTCBCTTCB
T ss_pred EcceEeeCCEEEecCCcEEEEEEEeCCHHHHHHHHHHHHhcceeCCcE
Confidence 2444321 1123458999999999999999999999999998853
No 31
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=99.98 E-value=2.7e-30 Score=265.40 Aligned_cols=303 Identities=17% Similarity=0.170 Sum_probs=220.4
Q ss_pred CcEEEEecCcHHH--HHHHHHHHHcCCCee-----EEEeccChhhHHHHHhccccCH---------HHHHHHhhhhCCcE
Q 013241 71 QEKILVANRGEIA--VRVIRTAHEMGIPCV-----AVYSTIDKDALHVKLADESVCI---------EEAVKLADELGFPV 134 (447)
Q Consensus 71 ~~kvLianrgeia--~ri~r~~~~lGi~~v-----av~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~Pv 134 (447)
++-|+.. .|.. ..+++.++++|+++. ++..+.||..++..+.+.++++ +++.+++++++||+
T Consensus 62 ~d~v~~~--~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~ 139 (417)
T 2ip4_A 62 IDLTLVG--PEAPLVEGIADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMERYGIPTARYRVFREPLEALAYLEEVGVPV 139 (417)
T ss_dssp CCEEEEC--SSHHHHTTHHHHHHHHTCCEESCCHHHHHHHHCHHHHHHHHHHTCCCBCCEEEESSHHHHHHHHHHHCSSE
T ss_pred CCEEEEC--CchHHHHHHHHHHHHCCCCEECccHHHHHHHcCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHcCCCE
Confidence 4444432 4444 367788888998854 2334579999999999888876 77888888999999
Q ss_pred EEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEee-eee-cccc
Q 013241 135 MIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE-RDC-SIQR 212 (447)
Q Consensus 135 VvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~-r~~-s~~~ 212 (447)
||||..|+||+|+++|++.+|+.++++.+.. ..|+ ..++|||||+| +|+++.++.|+. .+..+.. +.. ....
T Consensus 140 vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~---~~~~-~~~lvEe~i~g-~E~sv~~~~~G~-~~~~~~~~~~~~~~~~ 213 (417)
T 2ip4_A 140 VVKDSGLAAGKGVTVAFDLHQAKQAVANILN---RAEG-GEVVVEEYLEG-EEATVLALTDGE-TILPLLPSQDHKRLLD 213 (417)
T ss_dssp EEECTTSCSSTTCEEESCHHHHHHHHHHHTT---SSSC-CCEEEEECCCS-CEEEEEEEESSS-CEEECCCBEECCEEET
T ss_pred EEEECCCCCCCCEEEeCCHHHHHHHHHHHHh---hccC-CeEEEEECccC-cEEEEEEEEeCC-EEEEcchheechhhcc
Confidence 9999999999999999999999999877641 1233 78999999998 899999998543 2333321 110 0000
Q ss_pred -----ccceeeEecCCCCCCHHHHHHH-HHHHHHHHHHc-----CCccEeEEEEEEecCCCEEEEEEeccCCCc-cchhh
Q 013241 213 -----RNQKLLEEAPSPALTPELRKAM-GDAAVAAAASI-----GYIGVGTVEFLLDERGSFYFMEMNTRIQVE-HPVTE 280 (447)
Q Consensus 213 -----~~~k~~~~~P~~~l~~~~~~~l-~~~a~~i~~al-----g~~G~~~vEf~~d~~G~~~~iEiNpR~~g~-~~v~e 280 (447)
.........|++ +++++.+++ .+++.++++++ +|.|++++||+++++| +||+|+|||+++. +..++
T Consensus 214 ~~~~~~~g~~~~~~p~~-l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~~viEiN~R~g~~~~~~i~ 291 (417)
T 2ip4_A 214 GDQGPMTGGMGAVAPYP-MDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGLMLTREG-PKVLEFNARFGDPEAQALL 291 (417)
T ss_dssp TTEEEECSCSEEEESCC-CCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEECSSC-EEEEEEESSCCTTHHHHHT
T ss_pred CCCCCcCCCCeeeeCCC-CCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEEeCCC-eEEEEEecCCCCcHHHHHH
Confidence 001122457888 999988888 66677777775 7889999999999889 9999999999875 33455
Q ss_pred hhcCCCHHHHHHHHHcCCCCCCCcccccc-ceeEEEEEEeeCCCCccccCCCCc-eeEEecCCCCcEEEeeeecCCcccC
Q 013241 281 MISSVDLIEEQIHVAMGGKLRYKQEDIVL-QGHSIECRINAEDPFKNFRPGPGR-ITAYLPAGGPFVRMDSHVYPDYVVP 358 (447)
Q Consensus 281 ~~~GiDl~~~~i~~a~G~~l~~~~~~~~~-~g~ai~~ri~ae~p~~~f~p~~g~-i~~~~~~~~~~vr~d~~~~~G~~v~ 358 (447)
..+|+|+.+.+++++.|.... .++.. .++++.+++.++++.. .|..|. |..+..+ |++++. ..|..+.
T Consensus 292 ~~~g~d~~~~~~~~~~g~l~~---~~~~~~~~~~~~~~l~~~~~~~--~~~~g~~i~~~~~~--~~v~~~---~~g~~~~ 361 (417)
T 2ip4_A 292 PLLENDLVELALRVAEGRLAG---TRLSWKEGAAACVVLAAPGYPE--SPRKGIPLHVPEPP--EGVLVF---HAGTRRE 361 (417)
T ss_dssp TTBCSCHHHHHHHHHHTCGGG---CCCCBCSSEEEEEEEECTTTTT--SCCCCCBCBCCCCC--TTEEEE---ESSEEES
T ss_pred HHhCCCHHHHHHHHHcCCCCc---CCccccCCcEEEEEEeCCCCCC--CCCCCCcccccCCC--CCeEEE---ECceEee
Confidence 679999999999999996321 12222 3578888888765422 355665 5555433 566542 2454432
Q ss_pred -----CCCCccceEEEEEcCCHHHHHHHHHHhhhccEEecc
Q 013241 359 -----PSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGV 394 (447)
Q Consensus 359 -----~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G~ 394 (447)
...++ +|+|+++|+|+++|+++++++++++.++|.
T Consensus 362 ~~~~~~~~~r-v~~v~~~g~~~~~a~~~~~~~~~~i~~~~~ 401 (417)
T 2ip4_A 362 GGRLVSAGGR-VLNVVGLGRDLKEALERAYAYIPQVGFPGA 401 (417)
T ss_dssp SSSEEECSSE-EEEEEEEESSHHHHHHHHHHHGGGSBCTTC
T ss_pred CCeEEecCCc-EEEEEEEcCCHHHHHHHHHHHHhcCccCCc
Confidence 22234 899999999999999999999999999884
No 32
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.97 E-value=2.1e-29 Score=260.15 Aligned_cols=303 Identities=17% Similarity=0.179 Sum_probs=217.7
Q ss_pred HHHHHHHHHHHcCCCee-----EEEeccChhhHHHHHhccccCH---------HHHHHHhhhhCCcEEEEeCCCCCCcCe
Q 013241 82 IAVRVIRTAHEMGIPCV-----AVYSTIDKDALHVKLADESVCI---------EEAVKLADELGFPVMIKATAGGGGRGM 147 (447)
Q Consensus 82 ia~ri~r~~~~lGi~~v-----av~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv 147 (447)
....+++.++++|+++. +...+.||..++..+.+.++++ +++.+++++++||+||||..++||+|+
T Consensus 79 l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIptp~~~~~~~~~ea~~~~~~~g~PvVvKp~~~~gg~GV 158 (431)
T 3mjf_A 79 LVIGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQNFTDVEAALAYVRQKGAPIVIKADGLAAGKGV 158 (431)
T ss_dssp HHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCSBCCEEEESCHHHHHHHHHHHCSSEEEEESSSCTTCSE
T ss_pred HHHHHHHHHHhcCCCeeCCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEeeCCHHHHHHHHHHcCCeEEEEECCCCCCCcE
Confidence 34578899999999865 3445689999999999998887 788888999999999999999999999
Q ss_pred EEECCHHHHHHHHHHHHHHHHHhcC--CCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeee--ccccc-----cceee
Q 013241 148 RLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC--SIQRR-----NQKLL 218 (447)
Q Consensus 148 ~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~--s~~~~-----~~k~~ 218 (447)
+++++.+|+.++++.+... ..|+ +..++|||||+| +|+++.++.|+. +++.+..... ..... .....
T Consensus 159 ~iv~~~~el~~a~~~~~~~--~~~g~~~~~vlvEe~i~G-~E~sv~~~~dg~-~~~~~~~~~~~~~~~~~~~g~~~gg~g 234 (431)
T 3mjf_A 159 IVAMTQEEAETAVNDMLAG--NAFGDAGHRIVVEEFLDG-EEASFIVMVDGE-NVLPMATSQDHKRVGDGDTGPNTGGMG 234 (431)
T ss_dssp EEECSHHHHHHHHHHHHTT--HHHHCCCCCEEEEECCCS-EEEEEEEEEESS-CEEECCCBEECCEEETTTEEEECSCSE
T ss_pred EEeCCHHHHHHHHHHHHhh--ccccCCCCeEEEEEeeCC-cEEEEEEEEcCC-EEEEEEeeEeceecccCCCCCCCCCce
Confidence 9999999999999887632 1233 358999999998 999999999875 6666543110 00000 01123
Q ss_pred EecCCCCCCHHHHHHHHHH----HHHHHHHcCC--ccEeEEEEEEecCCCEEEEEEeccCCCc-cchhhhhcCCCHHHHH
Q 013241 219 EEAPSPALTPELRKAMGDA----AVAAAASIGY--IGVGTVEFLLDERGSFYFMEMNTRIQVE-HPVTEMISSVDLIEEQ 291 (447)
Q Consensus 219 ~~~P~~~l~~~~~~~l~~~----a~~i~~alg~--~G~~~vEf~~d~~G~~~~iEiNpR~~g~-~~v~e~~~GiDl~~~~ 291 (447)
..+|++.++++..+++.+. +.++++++|+ +|++++||+++++|++||+|+|||++.. ..++...+|+|+++.+
T Consensus 235 ~~~P~~~l~~~~~~~i~~~i~~~~~~~~~~~g~~~~G~~~ve~~~~~~g~~~viEiN~R~G~~~~~~i~~~~g~dl~~~~ 314 (431)
T 3mjf_A 235 AYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISADGQPKVIEFNCRFGDPETQPIMLRMRSDLVELC 314 (431)
T ss_dssp EEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEECTTSCEEEEEECGGGSTTTHHHHHHHBCSCHHHHH
T ss_pred EEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHCCCHHHHH
Confidence 4678887899999888876 6777777665 7999999999998999999999999742 3445578999999999
Q ss_pred HHHHcCCCCCCCcccccc-ceeEEEEEEeeCCCCccccCCCC-ceeEEecCCCCcEEE-eeee--cCCcccCCCCCccce
Q 013241 292 IHVAMGGKLRYKQEDIVL-QGHSIECRINAEDPFKNFRPGPG-RITAYLPAGGPFVRM-DSHV--YPDYVVPPSYDSLLG 366 (447)
Q Consensus 292 i~~a~G~~l~~~~~~~~~-~g~ai~~ri~ae~p~~~f~p~~g-~i~~~~~~~~~~vr~-d~~~--~~G~~v~~~~ds~lg 366 (447)
++++.|+..... +.+ .+.++.. +.+...+.. .+..| .|..+.....+++.+ ..+. ..|..+-.. +.+++
T Consensus 315 ~~~~~G~l~~~~---~~~~~~~a~~v-v~a~~gyp~-~~~~g~~i~~~~~~~~~~~~~~~ag~~~~~~~~~~~~-ggRv~ 388 (431)
T 3mjf_A 315 LAGTQGKLNEKT---SDWDERPSLGV-VLAAGGYPA-DYRQGDVIHGLPQQEVKDGKVFHAGTKLNGNHEVVTN-GGRVL 388 (431)
T ss_dssp HHHHTTCGGGCC---CCBCSSCEEEE-EEEETTTTS-CCCCCCBCBCCCSSCBTTEEEEESSEEECTTSCEEEC-SSEEE
T ss_pred HHHHcCCCCCCC---ccccCCcEEEE-EecCCCcCc-cCCCCCEeeCCccccCCCcEEEEeeeEecCCCEEEec-CCeEE
Confidence 999999743221 112 2344433 443322111 12333 333332211145543 2222 223033333 34599
Q ss_pred EEEEEcCCHHHHHHHHHHhhhccEEecc
Q 013241 367 KLIVWAPTREKAIERMKRALNDTIITGV 394 (447)
Q Consensus 367 ~vi~~g~~~~eA~~~~~~al~~~~i~G~ 394 (447)
.|++.|+|.++|.++++++++.+.++|.
T Consensus 389 ~v~~~g~~~~~A~~~a~~~~~~i~~~~~ 416 (431)
T 3mjf_A 389 CVTALGETVAQAQQYAYQLAEGIQWEGV 416 (431)
T ss_dssp EEEEECSSHHHHHHHHHHHHTTCBCTTE
T ss_pred EEEEecCCHHHHHHHHHHHhccCCCCCc
Confidence 9999999999999999999999999984
No 33
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=99.97 E-value=5.1e-30 Score=266.16 Aligned_cols=303 Identities=18% Similarity=0.214 Sum_probs=215.9
Q ss_pred CcHHH--HHHHHHHHHcCCCee-----EEEeccChhhHHHHHhccccCH---------HHHHHHhhhhCCc-EEEEeCCC
Q 013241 79 RGEIA--VRVIRTAHEMGIPCV-----AVYSTIDKDALHVKLADESVCI---------EEAVKLADELGFP-VMIKATAG 141 (447)
Q Consensus 79 rgeia--~ri~r~~~~lGi~~v-----av~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~P-vVvKP~~g 141 (447)
..|.. ..+++.++++|+++. ++..+.||..++..+.+.++++ +++.+++++++|| +||||..|
T Consensus 95 ~~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~g~P~vvvKp~~~ 174 (452)
T 2qk4_A 95 GPEAPLAAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKPEEACSFILSADFPALVVKASGL 174 (452)
T ss_dssp CSSHHHHTTHHHHHHHTTCCEESCCTTTTHHHHBHHHHHHHHHHTTCCBCCEEEESSHHHHHHHHHHCSSCEEEEEESBC
T ss_pred CCcHHHHHHHHHHHHhcCCcEeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhCCCCeEEEEeCCC
Confidence 34554 377888899999854 2334589999999999998877 7788888899999 99999999
Q ss_pred CCCcCeEEECCHHHHHHHHHHHHHHHHHhcC--CCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeee--eccccc----
Q 013241 142 GGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD--CSIQRR---- 213 (447)
Q Consensus 142 ~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~--~s~~~~---- 213 (447)
+||+|+++|++.+|+.++++.+... ..|+ +.+++|||||+| +|+++.++.|+. .++.++... ......
T Consensus 175 ~gg~Gv~~v~~~~el~~~~~~~~~~--~~~g~~~~~~lvEe~i~G-~E~sv~~~~dG~-~~~~~~~~~~~~~~~~~~~~~ 250 (452)
T 2qk4_A 175 AAGKGVIVAKSKEEACKAVQEIMQE--KAFGAAGETIVIEELLDG-EEVSCLCFTDGK-TVAPMPPAQDHKRLLEGDGGP 250 (452)
T ss_dssp ---CCEEECSSHHHHHHHHHHHTTC---------CCEEEEECCCS-EEEEEEEEECSS-CEEECCCBEEEEEEETTTEEE
T ss_pred CCCCCEEEeCCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCCC-CeEEEEEEECCC-EEEEcceeeecccccCCCCCC
Confidence 9999999999999999998876432 1233 368999999998 999999998543 355443211 001001
Q ss_pred -cceeeEecCCCCCCHHHHHHHH-HHHHHHHHHc-----CCccEeEEEEEEecCCCEEEEEEeccCCCc-cchhhhhcCC
Q 013241 214 -NQKLLEEAPSPALTPELRKAMG-DAAVAAAASI-----GYIGVGTVEFLLDERGSFYFMEMNTRIQVE-HPVTEMISSV 285 (447)
Q Consensus 214 -~~k~~~~~P~~~l~~~~~~~l~-~~a~~i~~al-----g~~G~~~vEf~~d~~G~~~~iEiNpR~~g~-~~v~e~~~Gi 285 (447)
........|++.+++++.+++. +++.++++++ +|.|++++||+++++| +||+|+|||+++. +......+|+
T Consensus 251 ~~g~~~~~~P~~~l~~~~~~~~~~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~~viEiN~R~~~~~~~~i~~~~g~ 329 (452)
T 2qk4_A 251 NTGGMGAYCPAPQVSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTKNG-PKVLEFNCRFGDPECQVILPLLKS 329 (452)
T ss_dssp EEEEEEEEESCTTCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEEETTE-EEEEEEESSCCTTTHHHHGGGBCS
T ss_pred CCCCceeeccCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-cEEEEEeccCCCcHHHHHHHHhCC
Confidence 0112245788768999888886 6777777665 6789999999999989 9999999999975 3345667899
Q ss_pred CHHHHHHHHHcCCCCCCCccccc-ccee-EEEEEEeeCCCCccccCCCC-ceeEEecCCCCcEEEeeeecCCcccC----
Q 013241 286 DLIEEQIHVAMGGKLRYKQEDIV-LQGH-SIECRINAEDPFKNFRPGPG-RITAYLPAGGPFVRMDSHVYPDYVVP---- 358 (447)
Q Consensus 286 Dl~~~~i~~a~G~~l~~~~~~~~-~~g~-ai~~ri~ae~p~~~f~p~~g-~i~~~~~~~~~~vr~d~~~~~G~~v~---- 358 (447)
|+.+.+++++.|. ++ +.++. ..++ ++.++++++++.. .|..| .|..+..+..|++++. ..|..++
T Consensus 330 d~~~~~~~~~~g~-l~--~~~~~~~~~~~a~~~~l~~~g~~~--~~~~g~~i~~l~~~~~~~v~~~---~~G~~~~~~~~ 401 (452)
T 2qk4_A 330 DLYEVIQSTLDGL-LC--TSLPVWLENHTALTVVMASKGYPG--DYTKGVEITGFPEAQALGLEVF---HAGTALKNGKV 401 (452)
T ss_dssp CHHHHHHHHHTTC-GG--GGCCCBCTTCEEEEEEEECTTTTS--SCCCSCBCBCHHHHHHTTCEEE---ESSEEEETTEE
T ss_pred CHHHHHHHHHcCC-CC--cccceecCCCcEEEEEEECCCCCC--CCCCCCcccCccccCCCCcEEE---ECcEEeeCCeE
Confidence 9999999999986 32 22222 2355 8889998875432 35556 4554432223455542 2454432
Q ss_pred CCCCccceEEEEEcCCHHHHHHHHHHhhhccEEecc
Q 013241 359 PSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGV 394 (447)
Q Consensus 359 ~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G~ 394 (447)
.....++|+|+++|+|+++|+++++++++.+.++|.
T Consensus 402 ~~~~~rv~~v~~~g~~~~~a~~~~~~~~~~i~~~g~ 437 (452)
T 2qk4_A 402 VTHGGRVLAVTAIRENLISALEEAKKGLAAIKFEGA 437 (452)
T ss_dssp EECSSEEEEEEEEESSHHHHHHHHHHHHHHCBCTTC
T ss_pred EecCCeEEEEEEecCCHHHHHHHHHHHHhhcccCCc
Confidence 112345799999999999999999999999999884
No 34
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.97 E-value=4e-29 Score=258.81 Aligned_cols=311 Identities=15% Similarity=0.141 Sum_probs=224.6
Q ss_pred CcEEEEecCcHHHH--HHHHHHHHcCCCee-----EEEeccChhhHHHHHhccccCH---------HHHHHHhhhhCCcE
Q 013241 71 QEKILVANRGEIAV--RVIRTAHEMGIPCV-----AVYSTIDKDALHVKLADESVCI---------EEAVKLADELGFPV 134 (447)
Q Consensus 71 ~~kvLianrgeia~--ri~r~~~~lGi~~v-----av~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~Pv 134 (447)
++-|++ ..|... .+++.++++|+++. +...+.||..++..+.+.++++ +++.+++++++||+
T Consensus 84 id~vv~--g~E~~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~ea~~~~~~~g~Pv 161 (442)
T 3lp8_A 84 IELVVI--GPETPLMNGLSDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYGYFVDTNSAYKFIDKHKLPL 161 (442)
T ss_dssp CCEEEE--CSHHHHHTTHHHHHHHTTCEEESCCHHHHHHHHCHHHHHHHHHHHTCCBCCEEEESSHHHHHHHHHHSCSSE
T ss_pred CCEEEE--CCcHHHHHHHHHHHHhcCCcEecCCHHHHHHhhCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHcCCcE
Confidence 444443 455554 68889999999865 3345689999999999998887 78888889999999
Q ss_pred EEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcC--CCcEEEeeccCCCceEEEEEEEeCCCcEEEEeee-ee-cc
Q 013241 135 MIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGER-DC-SI 210 (447)
Q Consensus 135 VvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r-~~-s~ 210 (447)
||||..++||+|++++++.+|+.++++.+... ..|+ ...++|||||+| +|+++.++.|+. .++.+... +. ..
T Consensus 162 VvKp~~~~gg~GV~iv~~~eel~~a~~~~~~~--~~~g~~~~~vlvEe~i~G-~E~sv~~~~dg~-~~~~~~~~~~~~~~ 237 (442)
T 3lp8_A 162 VVKADGLAQGKGTVICHTHEEAYNAVDAMLVH--HKFGEAGCAIIIEEFLEG-KEISFFTLVDGS-NPVILGVAQDYKTI 237 (442)
T ss_dssp EEEESSCCTTTSEEEESSHHHHHHHHHHHHTS--CTTGGGGSSEEEEECCCS-EEEEEEEEEESS-CEEEEEEEEECCEE
T ss_pred EEeECCCCCCCeEEEeCCHHHHHHHHHHHHhh--cccCCCCCeEEEEEeecC-cEEEEEEEECCC-eEEEeEEeEeeeec
Confidence 99999999999999999999999999887632 1233 368999999998 999999998865 55544331 11 01
Q ss_pred ccc-----cceeeEecCCCCCCHHHHHHHHHH----HHHHHHHcCC--ccEeEEEEEEecCCCEEEEEEeccCCC-ccch
Q 013241 211 QRR-----NQKLLEEAPSPALTPELRKAMGDA----AVAAAASIGY--IGVGTVEFLLDERGSFYFMEMNTRIQV-EHPV 278 (447)
Q Consensus 211 ~~~-----~~k~~~~~P~~~l~~~~~~~l~~~----a~~i~~alg~--~G~~~vEf~~d~~G~~~~iEiNpR~~g-~~~v 278 (447)
... .......+|++.+++++.+++.+. +.++++++|+ .|++++||+++++| +||+|+|+|+++ ++..
T Consensus 238 ~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~a~~~~~a~g~~~~G~~~ve~~~~~~g-~~viEiN~R~g~~~~~~ 316 (442)
T 3lp8_A 238 GDNNKGPNTGGMGSYSKPNIITQEMEHIIIQKIIYPTIKAMFNMNIQFRGLLFAGIIIKKNE-PKLLEYNVRFGDPETQS 316 (442)
T ss_dssp EGGGEEEECSCSEEEECTTSSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTE-EEEEEEESSCCTTHHHH
T ss_pred ccCCCCCCCCCcEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-eEEEEEecCCCCCchhh
Confidence 011 111245678877899999999887 8888899887 79999999999888 999999999996 4777
Q ss_pred hhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCCCCccccCCCC-ceeEEec-CCCCcEEEe-eee--cC
Q 013241 279 TEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPG-RITAYLP-AGGPFVRMD-SHV--YP 353 (447)
Q Consensus 279 ~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g-~i~~~~~-~~~~~vr~d-~~~--~~ 353 (447)
+...++.|+++.+++++.|+..... +.+...+..+.+.+...+.. .+..| .|+.+.. ...+++.+. .+. ..
T Consensus 317 ~~~~~~~dl~~~~~~~~~G~l~~~~---~~~~~~~a~~vv~a~~gyp~-~~~~g~~i~g~~~~~~~~~~~~~~ag~~~~~ 392 (442)
T 3lp8_A 317 ILPRLNSDFLKLLSLTAKGKLGNES---VELSKKAALCVVVASRGYPG-EYKKNSIINGIENIEKLPNVQLLHAGTRREG 392 (442)
T ss_dssp HGGGBCSCHHHHHHHHHHTCCSSCC---CCBCSCEEEEEEEEETTTTS-SCCSSCEEBSHHHHHTCSSEEEEESSEEEET
T ss_pred hHHHhCCCHHHHHHHHHcCCCCCCC---ceeccCcEEEEEEccCCCCC-CCCCCCEeeCCcccccCCCcEEEEeeeeccC
Confidence 7778899999999999999743321 22222333444555432221 12223 3433321 223455432 211 22
Q ss_pred CcccCCCCCccceEEEEEcCCHHHHHHHHHHhhhccEEecc
Q 013241 354 DYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGV 394 (447)
Q Consensus 354 G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G~ 394 (447)
| .+... +.+++.|++.|+|.++|+++++++++.+.++|.
T Consensus 393 ~-~~~~~-ggRv~~v~~~g~~~~~A~~~a~~~~~~i~~~~~ 431 (442)
T 3lp8_A 393 N-NWVSD-SGRVINVVAQGENLASAKHQAYAALDLLDWPDG 431 (442)
T ss_dssp T-EEEEC-SSEEEEEEEEESSHHHHHHHHHHHHTTCBCTTE
T ss_pred C-eEEec-CCeEEEEEEecCCHHHHHHHHHHHhcccCCCCC
Confidence 3 23233 345999999999999999999999999999884
No 35
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.97 E-value=2.5e-28 Score=253.42 Aligned_cols=304 Identities=19% Similarity=0.189 Sum_probs=208.9
Q ss_pred CcEEEEecCcHHH--HHHHHHHHHcCCCee-----EEEeccChhhHHHHHhccccCH---------HHHHHHhhhhCCcE
Q 013241 71 QEKILVANRGEIA--VRVIRTAHEMGIPCV-----AVYSTIDKDALHVKLADESVCI---------EEAVKLADELGFPV 134 (447)
Q Consensus 71 ~~kvLianrgeia--~ri~r~~~~lGi~~v-----av~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~Pv 134 (447)
++-|+. ..|.. ..+++.++++|+++. ++..+.||..++..+.+.++++ +++.+++++++||+
T Consensus 84 ~d~vi~--~~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~Pv 161 (451)
T 2yrx_A 84 IDLTIV--GPEAPLASGIVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTADHAAFTSYEEAKAYIEQKGAPI 161 (451)
T ss_dssp CSEEEE--CSHHHHHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHHCSSE
T ss_pred CCEEEE--CCchHHHHHHHHHHHHCCCCEeCccHHHHHHhhCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHhcCCcE
Confidence 444443 35554 367888899999854 2234579999999999998876 77888888999999
Q ss_pred EEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcC--CCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeecccc
Q 013241 135 MIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQR 212 (447)
Q Consensus 135 VvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~ 212 (447)
||||..|+||+|+++|++.+|+.++++.+... ..|+ +.+++|||||+| +|+++.++.|+. .+..........+
T Consensus 162 VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~--~~~g~~~~~~lvEe~i~G-~E~sv~~~~dG~--~~~~~~~~~~~~~ 236 (451)
T 2yrx_A 162 VIKADGLAAGKGVTVAQTVEEALAAAKAALVD--GQFGTAGSQVVIEEYLEG-EEFSFMAFVNGE--KVYPLAIAQDHKR 236 (451)
T ss_dssp EEEECC----CCEEEESSHHHHHHHHHHHHHH--SCCBTTBCCEEEEECCCS-EEEEEEEEEETT--EEEECCCBEECCE
T ss_pred EEEeCCCCCCCcEEEECCHHHHHHHHHHHHhc--cccCCCCCeEEEEECCcC-cEEEEEEEEcCC--EEEEeeeEEeccc
Confidence 99999999999999999999999999877552 2243 378999999998 899999998643 3332111000000
Q ss_pred --------ccceeeEecCCCCCCHHHHHHH-HHHHHHHHHHc-----CCccEeEEEEEEecCCCEEEEEEeccCCCc-cc
Q 013241 213 --------RNQKLLEEAPSPALTPELRKAM-GDAAVAAAASI-----GYIGVGTVEFLLDERGSFYFMEMNTRIQVE-HP 277 (447)
Q Consensus 213 --------~~~k~~~~~P~~~l~~~~~~~l-~~~a~~i~~al-----g~~G~~~vEf~~d~~G~~~~iEiNpR~~g~-~~ 277 (447)
.........|++.+++++.+++ .+++.++++++ +|.|++++||+++++| +||+|+|||+++. +.
T Consensus 237 ~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~~viEiN~R~g~~~~~ 315 (451)
T 2yrx_A 237 AYDGDEGPNTGGMGAYSPVPQISDEMMDAALEAILRPAAKALAAEGRPFLGVLYAGLMATANG-PKVIEFNARFGDPEAQ 315 (451)
T ss_dssp EETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTE-EEEEEEESSCCTTHHH
T ss_pred cccCCCCCCCCCCeEEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-cEEEEEecCCCCcHHH
Confidence 0011224468766889888888 66777777665 6789999999999988 9999999999876 34
Q ss_pred hhhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEeeCC-CCccccCCCCc-eeEEecCCCCcEEEeeeecCCc
Q 013241 278 VTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAED-PFKNFRPGPGR-ITAYLPAGGPFVRMDSHVYPDY 355 (447)
Q Consensus 278 v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~-p~~~f~p~~g~-i~~~~~~~~~~vr~d~~~~~G~ 355 (447)
.++..+|+|+.+.+++++.|...+... ..++++...+.+.. |. .|..|. |..+.... |++.+.. .|.
T Consensus 316 ~i~~~~g~d~~~~~~~~~~g~~~~~~~----~~~~~~~~~l~~~g~p~---~~~~g~~i~~~~~~~-~~~~v~~---~G~ 384 (451)
T 2yrx_A 316 VVLPRLKTDLVEAVLAVMDGKELELEW----TDEAVLGVVLAAKGYPG---AYERGAEIRGLDRIS-PDALLFH---AGT 384 (451)
T ss_dssp HHGGGBCSCHHHHHHHHHTTCCCCCCB----CSSEEEEEEEEETTTTS---SCCCCCEEBCGGGSC-TTSEEEE---SSE
T ss_pred HHHHHcCCCHHHHHHHHhcCCCCCccc----cCCceEEEEEecCCcCC---CCCCCCcCcCccccC-CCCEEEe---Ccc
Confidence 556689999999999999997553211 12345444444321 11 122222 22222112 4544321 233
Q ss_pred cc-----CCCCCccceEEEEEcCCHHHHHHHHHHhhhccEEecc
Q 013241 356 VV-----PPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGV 394 (447)
Q Consensus 356 ~v-----~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G~ 394 (447)
.+ ... +.++|+|++.|+|.++|+++++++++.+.++|.
T Consensus 385 ~~~~~~~~~~-~~rvg~v~~~g~~~~ea~~~~~~~~~~i~~~~~ 427 (451)
T 2yrx_A 385 KREGGAWYTN-GGRVLLLAAKGETLAKAKEKAYEQLAAIDCDGL 427 (451)
T ss_dssp EEETTEEEEC-SSEEEEEEEEESSHHHHHHHHHHHHTTCBCTTE
T ss_pred cccCCeEEcC-CCeEEEEEEEeCCHHHHHHHHHHHhhccccCCe
Confidence 21 122 346999999999999999999999999999874
No 36
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=99.96 E-value=6.1e-28 Score=248.19 Aligned_cols=302 Identities=17% Similarity=0.213 Sum_probs=210.6
Q ss_pred CcHHHH--HHHHHHHHcCCCee-----EEEeccChhhHHHHHhccccCH---------HHHHHHhhhhCCcEEEEeCCCC
Q 013241 79 RGEIAV--RVIRTAHEMGIPCV-----AVYSTIDKDALHVKLADESVCI---------EEAVKLADELGFPVMIKATAGG 142 (447)
Q Consensus 79 rgeia~--ri~r~~~~lGi~~v-----av~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~PvVvKP~~g~ 142 (447)
..|... .+++.++++|+++. ++..+.||..++..+.+.++++ +++.+++++++||+|+||..|+
T Consensus 69 ~~E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~vvKp~~~~ 148 (422)
T 2xcl_A 69 GPEVPLIEGLVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYDIPTAEYETFTSFDEAKAYVQEKGAPIVIKADGLA 148 (422)
T ss_dssp CSHHHHHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHHCSSEEEEESSCG
T ss_pred CCcHHHHHHHHHHHHHCCCCEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHhcCCCEEEEeCCCC
Confidence 456553 67888889999854 2234579999999999998876 7788888899999999999999
Q ss_pred CCcCeEEECCHHHHHHHHHHHHHHHHHhcC--CCcEEEeeccCCCceEEEEEEEeCCCcEEEEee-ee-ecccc-----c
Q 013241 143 GGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE-RD-CSIQR-----R 213 (447)
Q Consensus 143 Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~--~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~-r~-~s~~~-----~ 213 (447)
||+|+++|++.+|+.++++.+... ..|+ +..++|||||+| +|+++.++.|+. .+..+.. +. ..... .
T Consensus 149 ~g~Gv~~v~~~~el~~~~~~~~~~--~~~g~~~~~~lvEe~i~g-~E~sv~~~~dG~-~~~~~~~~~~~~~~~~~~~~~~ 224 (422)
T 2xcl_A 149 AGKGVTVAMTEEEAIACLHDFLED--EKFGDASASVVIEEYLSG-EEFSLMAFVKGE-KVYPMVIAQDHKRAFDGDKGPN 224 (422)
T ss_dssp GGTCEEEESSHHHHHHHHHHHHTS--CTTGGGGSSEEEEECCCS-EEEEEEEEEETT-EEEECCCBEEEEEEEGGGEEEE
T ss_pred CCCcEEEECCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCcC-cEEEEEEEEcCC-EEEecceeeeeehhcCCCCCCC
Confidence 999999999999999998876541 1132 368999999998 999999998643 2332221 10 00000 0
Q ss_pred cceeeEecCCCCCCHHHHHHHH-HHHHHHHHHc-----CCccEeEEEEEEecCCCEEEEEEeccCCCc-cchhhhhcCCC
Q 013241 214 NQKLLEEAPSPALTPELRKAMG-DAAVAAAASI-----GYIGVGTVEFLLDERGSFYFMEMNTRIQVE-HPVTEMISSVD 286 (447)
Q Consensus 214 ~~k~~~~~P~~~l~~~~~~~l~-~~a~~i~~al-----g~~G~~~vEf~~d~~G~~~~iEiNpR~~g~-~~v~e~~~GiD 286 (447)
........|++.+++++.+++. +++.++++++ +|.|++++||+++++| +||+|+|||+++. +...+..+|+|
T Consensus 225 ~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~vd~~~~~~g-~~viEiN~R~g~~~~~~i~~~~g~d 303 (422)
T 2xcl_A 225 TGGMGAYSPVPQISEETVRHAVETIVKPAAKAMVQEGRSFTGVLYAGLMLTENG-SKVIEFNARFGDPETQVVLPRMESD 303 (422)
T ss_dssp EEEEEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTE-EEEEEEESSCCTTTHHHHGGGBCSC
T ss_pred CCCCeeEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEEeCCC-cEEEEEecCCCCcHHHHHHHhcCCC
Confidence 1112245687668898888884 4777777665 6789999999999988 9999999999876 44556789999
Q ss_pred HHHHHHHHHcCCCCCCCccccccceeEEEEEEeeC-CCCccccCCCC-ceeEEecCCCCcEEEee-eec-CCcccCCCCC
Q 013241 287 LIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAE-DPFKNFRPGPG-RITAYLPAGGPFVRMDS-HVY-PDYVVPPSYD 362 (447)
Q Consensus 287 l~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae-~p~~~f~p~~g-~i~~~~~~~~~~vr~d~-~~~-~G~~v~~~~d 362 (447)
+.+.+++++.|...+.. . ..++++.+.+.+. .|. .|..| .+..+.... |++++.. +.. .+..+.+.++
T Consensus 304 ~~~~~~~~~~g~l~~~~---~-~~~~~~~~~~~~~g~~~---~~~~g~~i~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~ 375 (422)
T 2xcl_A 304 LVQVLLDLLDDKEVDLR---W-KDTAAVSVVLASEGYPE---SYAKGTPIGSLAAET-EQVVVFHAGTKAEGGEFVTNGG 375 (422)
T ss_dssp HHHHHHHHHTTCCCCCC---B-CSCEEEEEEEEETTTTS---CCCSCCBCCCCCCCS-SSEEEEESSEEECSSSEEECSS
T ss_pred HHHHHHHHHcCCcCccc---c-cCCceEEEEEECCCCCC---CCCCCCcccCcccCC-CCcEEEEeeeEeeCCEEEeCCC
Confidence 99999999998644321 1 1234555555543 111 01112 122222111 5665421 110 0112333456
Q ss_pred ccceEEEEEcCCHHHHHHHHHHhhhccEEecc
Q 013241 363 SLLGKLIVWAPTREKAIERMKRALNDTIITGV 394 (447)
Q Consensus 363 s~lg~vi~~g~~~~eA~~~~~~al~~~~i~G~ 394 (447)
+ +++|+++|+|+++|+++++++++.+.++|.
T Consensus 376 r-~~~v~~~g~~~~~a~~~~~~~~~~i~~~g~ 406 (422)
T 2xcl_A 376 R-VANVTAFDETFEAARDRVYKAVDEIFKPGL 406 (422)
T ss_dssp E-EEEEEEEESSHHHHHHHHHHHHHHHCCTTE
T ss_pred c-eEEEEEEeCCHHHHHHHHHHHHhcceeCCc
Confidence 6 889999999999999999999999988873
No 37
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.95 E-value=2.5e-26 Score=260.73 Aligned_cols=241 Identities=20% Similarity=0.328 Sum_probs=182.5
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCee-----EEEeccChhhHHHHHhccccCH---------HHHHHHhhhhCCcEEE
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCV-----AVYSTIDKDALHVKLADESVCI---------EEAVKLADELGFPVMI 136 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~v-----av~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~PvVv 136 (447)
.+-|++...|+.+..+++.++++|++.+ ++..+.||..++..+.+.++++ +++.++++++|||+||
T Consensus 635 ~d~Vi~~~g~~~~~~la~~Le~~Gi~i~G~~~~ai~~~~DK~~~~~ll~~~GIp~P~~~~~~s~eea~~~~~~ig~PvvV 714 (1073)
T 1a9x_A 635 PKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVV 714 (1073)
T ss_dssp CSEEECSSSTHHHHTTHHHHHHTTCCBCSSCHHHHHHHHSHHHHHHHHHHHTCCCCCEEECCSHHHHHHHHHHHCSSEEE
T ss_pred cceEEeecCCchHHHHHHHHHHCCCCeeCCCHHHHHHhhCHHHHHHHHHHcCcCCCCceEECCHHHHHHHHHHcCCCEEE
Confidence 3455555677888889999999998865 3345689999999999888876 7888999999999999
Q ss_pred EeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeecccc---c
Q 013241 137 KATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQR---R 213 (447)
Q Consensus 137 KP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~---~ 213 (447)
||..|+||+||++|++.+|+.++++.+... +++.+++||+||+|.+|++++++.|+.+ ++..+..+ .+.+ +
T Consensus 715 KP~~~~gG~Gv~iv~~~~el~~~~~~a~~~----~~~~~vlvEefI~g~~E~~V~~l~d~~~-v~~~~i~e-~~~~~g~~ 788 (1073)
T 1a9x_A 715 RASYVLGGRAMEIVYDEADLRRYFQTAVSV----SNDAPVLLDHFLDDAVEVDVDAICDGEM-VLIGGIME-HIEQAGVH 788 (1073)
T ss_dssp EC-------CEEEECSHHHHHHHHHHCC------------EEEBCCTTCEEEEEEEEECSSC-EEEEEEEE-ESSCTTSC
T ss_pred EECCCCCCCCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEccCCCcEEEEEEEEECCe-EEEEeeEE-EEeccCCc
Confidence 999999999999999999999998875432 2347899999999955999999998754 43333221 1111 1
Q ss_pred cceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHH
Q 013241 214 NQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIH 293 (447)
Q Consensus 214 ~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~ 293 (447)
........|+..++++..+++.+.+.++++++|++|++++||+++ +|++||+|+|||+++++++++.++|+|+++.+++
T Consensus 789 ~gd~~~~~P~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vdf~v~-~~~~~viEvNpR~~~~~~~~~~~tGi~l~~~~~~ 867 (1073)
T 1a9x_A 789 SGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVK-NNEVYLIEVNPRAARTVPFVSKATGVPLAKVAAR 867 (1073)
T ss_dssp GGGCCEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC-SSCEEEEEEECSCCTTHHHHHHHHSCCHHHHHHH
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEE-CCeEEEEEEECCCccHHHHHHHHHCcCHHHHHHH
Confidence 122334567766999999999999999999999999999999997 5679999999999999999999999999999999
Q ss_pred HHcCCCCC---CCccccccceeEEEEEEe
Q 013241 294 VAMGGKLR---YKQEDIVLQGHSIECRIN 319 (447)
Q Consensus 294 ~a~G~~l~---~~~~~~~~~g~ai~~ri~ 319 (447)
+++|.+++ +.+... +.++++.++++
T Consensus 868 ~~~G~~l~~~~~~~~~~-~~~~~vk~~~~ 895 (1073)
T 1a9x_A 868 VMAGKSLAEQGVTKEVI-PPYYSVKEVVL 895 (1073)
T ss_dssp HHTTCCHHHHTCCSCCC-CSSEEEEEEEC
T ss_pred HHcCCCchhcccCcCcC-CCeEEEEeccC
Confidence 99999873 222222 36788888775
No 38
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.94 E-value=6.6e-27 Score=235.67 Aligned_cols=222 Identities=17% Similarity=0.142 Sum_probs=167.3
Q ss_pred eeccccccccCCcccccccccccccCCCCccccCCCCCCccccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccCh
Q 013241 27 LRSSQCSFMVGSRTVNFPRQVVAGVGGKLKRRCGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (447)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk 106 (447)
+....+..+|++++|||.|+ .+ .++ +++ ++| ....+.+++.|++++........
T Consensus 110 gEdg~~q~~le~~gip~~G~----~~------~a~--~~~----~DK----------~~~k~~l~~~Gip~p~~~~~~~~ 163 (357)
T 4fu0_A 110 GEDGTLQGIFELAGIPVVGC----DT------LSS--ALC----MDK----------DRAHKLVSLAGISVPKSVTFKRF 163 (357)
T ss_dssp HHSSHHHHHHHHTTCCBSSC----CH------HHH--HHH----HCH----------HHHHHHHHHTTCBCCCEEEEEGG
T ss_pred ccCHHHHHHHHHCCCcEECc----CH------HHH--HHH----hCH----------HHHHHHHHHCCCCCCCEEeecCC
Confidence 45567788999999999998 33 111 223 333 22346677899999987665433
Q ss_pred hhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCc
Q 013241 107 DALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPR 186 (447)
Q Consensus 107 ~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ 186 (447)
+.. .++.++.+++|||+||||+.|+||+|+++|++.+||.++++.+... +..+++|+||+| +
T Consensus 164 ~~~-----------~~~~~~~~~lg~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~~~------~~~vlvE~~i~G-~ 225 (357)
T 4fu0_A 164 NEE-----------AAMKEIEANLTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAFEH------DTEVIVEETING-F 225 (357)
T ss_dssp GHH-----------HHHHHHHHHCCSSEEEEETTCSSSTTCEEESSHHHHHHHHHHHTTT------CSEEEEEECCCS-E
T ss_pred ChH-----------HHHHHHHHhcCCCEEEEECCCCCCCceEEeccHHhHHHHHHHHhcc------CCeEEEEEecCC-E
Confidence 110 3445667889999999999999999999999999999998876543 578999999999 9
Q ss_pred eEEEEEEEeCCCcEEEEee--eeeccccccceee-----EecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEec
Q 013241 187 HIEFQVLADKYGNVVHFGE--RDCSIQRRNQKLL-----EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE 259 (447)
Q Consensus 187 ei~v~vl~d~~g~vv~l~~--r~~s~~~~~~k~~-----~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~ 259 (447)
|+++.+++++.+.+..+.+ ..+.++++.+|.. ...|+. +++++.+++.+.|.+++++||++|+++|||++|+
T Consensus 226 e~~v~vl~~~~~~~~~v~~~~~~~~~~d~~~k~~~~~~~~~~pa~-l~~~~~~~i~~~A~~~~~aLg~~G~~~VDf~~~~ 304 (357)
T 4fu0_A 226 EVGCAVLGIDELIVGRVDEIELSSGFFDYTEKYTLKSSKIYMPAR-IDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYTP 304 (357)
T ss_dssp EEEEEEEESSSEEECCCEEEEECHHHHTSCSBCSSCCEEEESSCS-CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT
T ss_pred EEEEEEEecCCceEEEEEEEEcccccccccccccCCCceEecCCC-CCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEeC
Confidence 9999999987654433332 2344555554432 334665 9999999999999999999999999999999999
Q ss_pred CCCEEEEEEeccCCCc----cchhhhhcCCCHHHHHHH
Q 013241 260 RGSFYFMEMNTRIQVE----HPVTEMISSVDLIEEQIH 293 (447)
Q Consensus 260 ~G~~~~iEiNpR~~g~----~~v~e~~~GiDl~~~~i~ 293 (447)
+|++||+||||||+.. .|..-.++|+|+.+.+-+
T Consensus 305 dg~~~vlEvNt~PG~t~~S~~p~~~~~~G~~~~~li~~ 342 (357)
T 4fu0_A 305 SGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDK 342 (357)
T ss_dssp TCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHH
T ss_pred CCCEEEEEEeCCCCCCcccHHHHHHHHhCcCHHHHHHH
Confidence 9999999999999764 233445789987665443
No 39
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.93 E-value=3.8e-26 Score=232.43 Aligned_cols=190 Identities=21% Similarity=0.254 Sum_probs=146.2
Q ss_pred HHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHH
Q 013241 87 IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSE 166 (447)
Q Consensus 87 ~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~ 166 (447)
.+.+++.|||++......+.... + .++.++.+++|||+||||..|+||+|+++|++.+||.++++.+...
T Consensus 164 k~~l~~~GIp~p~~~~~~~~~~~-----~-----~~~~~~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~ 233 (386)
T 3e5n_A 164 KRVLRDARLAVAPFVCFDRHTAA-----H-----ADVDTLIAQLGLPLFVKPANQGSSVGVSQVRTADAFAAALALALAY 233 (386)
T ss_dssp HHHHHHTTCCBCCEEEEEHHHHT-----T-----CCHHHHHHHHCSSEEEEESBSCSSTTCEEECSGGGHHHHHHHHTTT
T ss_pred HHHHHHCCCCCCCEEEEeCcccc-----h-----hhHHHHHHhcCCCEEEEECCCCcCCCEEEECCHHHHHHHHHHHHhC
Confidence 45567788888877766554100 0 1566777889999999999999999999999999999998876432
Q ss_pred HHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeec--ccccccee------eEecCCCCCCHHHHHHHHHHH
Q 013241 167 AAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS--IQRRNQKL------LEEAPSPALTPELRKAMGDAA 238 (447)
Q Consensus 167 ~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s--~~~~~~k~------~~~~P~~~l~~~~~~~l~~~a 238 (447)
+..++|||||+| +|++|.+++|+...++..++..+. ++++..++ ....|+. ++++..+++.+.+
T Consensus 234 ------~~~vlVEe~I~G-~E~~v~vl~~~~~~~~~~gei~~~~~~~d~~~ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a 305 (386)
T 3e5n_A 234 ------DHKVLVEAAVAG-REIECAVLGNAVPHASVCGEVVVHDAFYSYATKYISEHGAEIVIPAD-IDAQTQQRIQQIA 305 (386)
T ss_dssp ------CSEEEEEECCCS-EEEEEEEECSSSCEEEEEEEECC-----------------CEESSCS-SCHHHHHHHHHHH
T ss_pred ------CCcEEEEcCCCC-eEEEEEEEeCCCceEEEeEEEEeCCcccchhcccCCCCCeEEEECCC-CCHHHHHHHHHHH
Confidence 478999999999 999999998877666655555433 22333333 3345777 9999999999999
Q ss_pred HHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCc----cchhhhhcCCCHHHHHHHH
Q 013241 239 VAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVE----HPVTEMISSVDLIEEQIHV 294 (447)
Q Consensus 239 ~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~----~~v~e~~~GiDl~~~~i~~ 294 (447)
.++++++|++|++++||+++++|++||+|||||++.. .|......|+|+.+.+.++
T Consensus 306 ~~~~~aLg~~G~~~vDf~~~~dg~~~vlEiN~~PG~t~~S~~p~~~~~~Gi~~~~li~~l 365 (386)
T 3e5n_A 306 VQAYQALGCAGMARVDVFLCADGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRL 365 (386)
T ss_dssp HHHHHHHTCCSEEEEEEEECTTCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHhCCccEEEEEEEEECCCcEEEEEeECCCCCCccCHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999999999988999999999999864 2334457899987765443
No 40
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.93 E-value=3.6e-25 Score=223.56 Aligned_cols=190 Identities=17% Similarity=0.237 Sum_probs=148.1
Q ss_pred HHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHH
Q 013241 87 IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSE 166 (447)
Q Consensus 87 ~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~ 166 (447)
.+.++++|++++......+.... ..++.++++++|||+||||..|++|.|+++|++.+|+.++++.+...
T Consensus 145 k~~l~~~Gip~p~~~~~~~~~~~----------~~~~~~~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~ 214 (364)
T 3i12_A 145 KRLLRDAGLNIAPFITLTRTNRH----------AFSFAEVESRLGLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEF 214 (364)
T ss_dssp HHHHHHTTCCBCCEEEEETTTGG----------GCCHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCEEEEEccccc----------hhhHHHHHHhcCCCEEEEECCCCCCcCeEEeCCHHHHHHHHHHHHhc
Confidence 45567788888877766554100 02667778889999999999999999999999999999999887654
Q ss_pred HHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeee--ccccccce------eeEecCCCCCCHHHHHHHHHHH
Q 013241 167 AAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC--SIQRRNQK------LLEEAPSPALTPELRKAMGDAA 238 (447)
Q Consensus 167 ~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~--s~~~~~~k------~~~~~P~~~l~~~~~~~l~~~a 238 (447)
+..++||+||+| +|+++.+++|+.+.+...++... .++.+..+ .....|++ ++++..+++.+.+
T Consensus 215 ------~~~vlVEe~I~G-~E~~v~vl~~~~~~~~~~~ei~~~~~~~~~~~ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a 286 (364)
T 3i12_A 215 ------DHKVVVEQGIKG-REIECAVLGNDNPQASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQ-IPSEVNDKIRAIA 286 (364)
T ss_dssp ------CSEEEEEECCCS-EEEEEEEEESSSCEEEEEEEEECCTTCC--TTTTSGGGGCEEESSCS-SCHHHHHHHHHHH
T ss_pred ------CCcEEEEcCcCC-eEEEEEEEeCCCceEeeeEEEecCCCccCHHHcccCCCceEEEeCCC-CCHHHHHHHHHHH
Confidence 478999999999 99999999887655555544211 12222222 34456887 9999999999999
Q ss_pred HHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCc----cchhhhhcCCCHHHHHHHH
Q 013241 239 VAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVE----HPVTEMISSVDLIEEQIHV 294 (447)
Q Consensus 239 ~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~----~~v~e~~~GiDl~~~~i~~ 294 (447)
.++++++|++|++++||+++++|++||+|+|+|++.. .|.....+|+|+.+.+.++
T Consensus 287 ~~~~~alg~~G~~~vD~~~~~~g~~~vlEiN~~Pg~t~~s~~p~~~~a~G~~~~~l~~~l 346 (364)
T 3i12_A 287 IQAYQTLGCAGMARVDVFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRL 346 (364)
T ss_dssp HHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHhCCceEEEEEEEEecCCCEEEEEeeCCCCCCCCCHHHHHHHHhCcCHHHHHHHH
Confidence 9999999999999999999988999999999999864 2444567899988865544
No 41
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.93 E-value=1.4e-25 Score=227.05 Aligned_cols=223 Identities=18% Similarity=0.165 Sum_probs=156.7
Q ss_pred eccccccccCCcccccccccccccCCCCccccCCCCCCccccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChh
Q 013241 28 RSSQCSFMVGSRTVNFPRQVVAGVGGKLKRRCGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKD 107 (447)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~ 107 (447)
....+..+|++++|||.|+ .+ .+. +++ ++|. ...+.++++|||++......+..
T Consensus 112 Edg~iq~lle~~gipy~G~----~~------~a~--~~~----~DK~----------~~k~~l~~~GIp~p~~~~~~~~~ 165 (372)
T 3tqt_A 112 EDGALQGLLELLNLPYVGA----NV------QSS--AVC----MEKD----------LTKTVLRAGGIPVVDWHTLSPRD 165 (372)
T ss_dssp TSSHHHHHHHHTTCCBSSC----CH------HHH--HHH----HSHH----------HHHHHHHHTTCCBCCCEEECTTS
T ss_pred cCHHHHHHHHHcCCCeeCc----CH------HHH--HHH----hCHH----------HHHHHHHHCCcCCCCEEEEechh
Confidence 3445778888888888877 22 111 122 2221 23455678899998877665441
Q ss_pred hHHHHHhccccCHHHHHHHhhhhCCc-EEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCc
Q 013241 108 ALHVKLADESVCIEEAVKLADELGFP-VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPR 186 (447)
Q Consensus 108 ~~~~~lad~~v~i~e~~~~~~~ig~P-vVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ 186 (447)
.. + ..+.++.+++||| +||||..|++|.||++|++.+||.++++.+... +..++||+||+| +
T Consensus 166 ~~-----~-----~~~~~~~~~lg~P~vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~~~------~~~vlVEe~I~G-~ 228 (372)
T 3tqt_A 166 AT-----E-----GVYQRLLDRWGTSELFVKAVSLGSSVATLPVKTETEFTKAVKEVFRY------DDRLMVEPRIRG-R 228 (372)
T ss_dssp CC-----T-----THHHHHHHHC---CEEEEESSCCSGGGEEEECSHHHHHHHHHHHTTT------CSCEEEEECCCS-E
T ss_pred hh-----h-----hHHHHHHHhcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhc------CCCEEEECCCCC-E
Confidence 10 0 1245667789999 999999999999999999999999998775432 478999999998 9
Q ss_pred eEEEEEEEeCCCcEEEEeeee-----ecccccc--ce-eeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEe
Q 013241 187 HIEFQVLADKYGNVVHFGERD-----CSIQRRN--QK-LLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLD 258 (447)
Q Consensus 187 ei~v~vl~d~~g~vv~l~~r~-----~s~~~~~--~k-~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d 258 (447)
|++|.+++++...+...++.. +.+..+. .. .....|+. ++++..+++.+.+.+++++||++|++++||+++
T Consensus 229 E~~v~vl~~~~~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~ 307 (372)
T 3tqt_A 229 EIECAVLGNGAPKASLPGEIIPHHDYYSYDAKYLDPNGATTTTSVD-LSESVTKQIQQIAIDAFKMVHCSGMARVDFFVT 307 (372)
T ss_dssp EEEEEEEESSSCEECCCEEEECC---------------CEEESCCC-CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred EEEEEEEeCCCceEeeeEEEecCCCccchhhcccCCCceEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEe
Confidence 999999988642222222211 1122111 12 44567887 999999999999999999999999999999999
Q ss_pred cCCCEEEEEEeccCCCc----cchhhhhcCCCHHHHHHHH
Q 013241 259 ERGSFYFMEMNTRIQVE----HPVTEMISSVDLIEEQIHV 294 (447)
Q Consensus 259 ~~G~~~~iEiNpR~~g~----~~v~e~~~GiDl~~~~i~~ 294 (447)
++|++||+|||||++.. .|....++|+|+.+.+.++
T Consensus 308 ~dg~~~vlEINt~PG~t~~S~~p~~~~~~G~~~~~li~~l 347 (372)
T 3tqt_A 308 PNNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQL 347 (372)
T ss_dssp TTCCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCcEEEEEEECCCCcCccCHHHHHHHHhCCCHHHHHHHH
Confidence 88999999999999853 3444567899987765443
No 42
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.93 E-value=9e-25 Score=221.90 Aligned_cols=216 Identities=19% Similarity=0.279 Sum_probs=158.8
Q ss_pred CcEEEEecCcHHH--HHHHHHHHHcCCCee-----EEEeccChhhHHHHHhccc-cCH-------------HHHHHHhhh
Q 013241 71 QEKILVANRGEIA--VRVIRTAHEMGIPCV-----AVYSTIDKDALHVKLADES-VCI-------------EEAVKLADE 129 (447)
Q Consensus 71 ~~kvLianrgeia--~ri~r~~~~lGi~~v-----av~~~~dk~~~~~~lad~~-v~i-------------~e~~~~~~~ 129 (447)
++-|+.+=.|..+ -.+...++.+|+|.+ +...+.||..++..+++.+ +++ +++.++.++
T Consensus 120 ~D~vf~~lhG~~GEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~G~Ipvp~~~~~~~~~~~~~~~~~~~~~ 199 (383)
T 3k3p_A 120 EAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEK 199 (383)
T ss_dssp TCEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHHCCCCBCCEEEEETTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCcchHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHhCCCcCCCCEEEEeCccchhHHHHHHHHh
Confidence 4556665444321 256778889999854 2335679999999999999 877 255667789
Q ss_pred hCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeee--e
Q 013241 130 LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGER--D 207 (447)
Q Consensus 130 ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r--~ 207 (447)
++||+||||..|++|.|+++|++.+|+.++++.+... +..++|||||+| +|++|.+++|+...+....+. .
T Consensus 200 lg~PvvVKP~~ggss~GV~~v~~~~el~~al~~a~~~------~~~vlVEe~I~G-~E~~v~vl~d~~~~~~~~~ei~~~ 272 (383)
T 3k3p_A 200 LIYPVFVKPANMGSSVGISKAENRTDLKQAIALALKY------DSRVLIEQGVDA-REIEVGILGNTDVKTTLPGEIVKD 272 (383)
T ss_dssp CCSSEEEEECC------CEEESSHHHHHHHHHHHHHH------CSEEEEEECCCS-EEEEEEEEESSSCEECCCEEEC--
T ss_pred cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhC------CCeEEEEcCCCC-eEEEEEEEeCCCeeEEeeEEEecC
Confidence 9999999999999999999999999999999887644 478999999998 999999998755433333332 1
Q ss_pred eccccccce-----eeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCc----cch
Q 013241 208 CSIQRRNQK-----LLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVE----HPV 278 (447)
Q Consensus 208 ~s~~~~~~k-----~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~----~~v 278 (447)
+.+..+..| .....|+. ++++..+++.+.+.++++++|++|++++||++|++|++||+|||||++.. .|.
T Consensus 273 ~~~~d~~~ky~~g~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~~g~~~vlEINtrPG~t~~S~~p~ 351 (383)
T 3k3p_A 273 VAFYDYEAKYIDNKITMAIPAE-IDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTEDGKVYLNELNTMPGFTQWSMYPL 351 (383)
T ss_dssp ---------------CEESSCC-CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCC--CHHHH
T ss_pred CCccchhhcccCCCeeEEecCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEECCCCEEEEEeeCCCCCCcccHHHH
Confidence 223323222 34567887 99999999999999999999999999999999988999999999999853 344
Q ss_pred hhhhcCCCHHHHHHHH
Q 013241 279 TEMISSVDLIEEQIHV 294 (447)
Q Consensus 279 ~e~~~GiDl~~~~i~~ 294 (447)
...+.|+|+.+.+.++
T Consensus 352 ~~~a~Gi~~~~li~~l 367 (383)
T 3k3p_A 352 LWENMGLSYSVLIEEL 367 (383)
T ss_dssp HHHHTTCCHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHH
Confidence 4567799987765544
No 43
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=99.92 E-value=5.7e-24 Score=215.76 Aligned_cols=220 Identities=20% Similarity=0.239 Sum_probs=169.9
Q ss_pred CcEEEEecCcHHHH--HHHHHHHHcCCCee-----EEEeccChhhHHHHHhccccCH---------HH----HHHHhhhh
Q 013241 71 QEKILVANRGEIAV--RVIRTAHEMGIPCV-----AVYSTIDKDALHVKLADESVCI---------EE----AVKLADEL 130 (447)
Q Consensus 71 ~~kvLianrgeia~--ri~r~~~~lGi~~v-----av~~~~dk~~~~~~lad~~v~i---------~e----~~~~~~~i 130 (447)
++-|+..-.|..+. .+...++.+|+|.+ ++..+.||..++..+++.++++ ++ +.++++.+
T Consensus 94 ~D~v~~~~~g~~gedg~~~~lle~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~~ 173 (377)
T 1ehi_A 94 FDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAEL 173 (377)
T ss_dssp CSEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHTTTCCCCCEEEECTTGGGGCCHHHHHHHH
T ss_pred CCEEEEecCCCCCcCHHHHHHHHHcCCCEeCcCHHHHHHHcCHHHHHHHHHHcCCCCCCEEEEeccccchHHHHHHHHhc
Confidence 56666665442221 45677888899874 3345689999999999888877 22 56667789
Q ss_pred CCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeec-
Q 013241 131 GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS- 209 (447)
Q Consensus 131 g~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s- 209 (447)
+||+||||..|+||+|+++|++.+||..+++.+... +..++|||||+|.+|+++.+++|+.+.++..++..+.
T Consensus 174 g~PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~------~~~vlvEe~I~G~~E~~v~vl~~~~~~~~~~~ei~~~~ 247 (377)
T 1ehi_A 174 GNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQY------DYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAHTVPN 247 (377)
T ss_dssp CSCEEEEESSCCTTTTEEEECSHHHHHHHHHHHTTT------CSCEEEEECCCCSCEEEEEEEESSSCEEEEEEEEECTT
T ss_pred CCCEEEEeCCCCCCcCEEEeCCHHHHHHHHHHHHhc------CCcEEEEcCCCCCceEEEEEEcCCCcEEEeeEEEEecC
Confidence 999999999999999999999999999998875432 4789999999987899999999876666666655441
Q ss_pred ------cccccc------eeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCcc-
Q 013241 210 ------IQRRNQ------KLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEH- 276 (447)
Q Consensus 210 ------~~~~~~------k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~- 276 (447)
+.++.. ......|+. ++++..+++.+.+.+++++||++|++++||+++++|++||+|||||+++..
T Consensus 248 ~~~~~~~~d~~~k~~~g~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~g~~~vlEiN~rpg~t~~ 326 (377)
T 1ehi_A 248 QGSGDGWYDYNNKFVDNSAVHFQIPAQ-LSPEVTKEVKQMALDAYKVLNLRGEARMDFLLDENNVPYLGEPNTLPGFTNM 326 (377)
T ss_dssp SSSSSCCCCHHHHTTCCTTCEEESSCC-CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCSTT
T ss_pred CCCcCceeCHHhcccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEeCCCCEEEEEEeCCCCCCcc
Confidence 222211 123456877 999999999999999999999999999999999889999999999998642
Q ss_pred ---chhhhhcCCCHHH---HHHHHHcC
Q 013241 277 ---PVTEMISSVDLIE---EQIHVAMG 297 (447)
Q Consensus 277 ---~v~e~~~GiDl~~---~~i~~a~G 297 (447)
|....++|+|+.+ .+++.+++
T Consensus 327 s~~p~~~~a~G~~~~~l~~~li~~al~ 353 (377)
T 1ehi_A 327 SLFKRLWDYSDINNAKLVDMLIDYGFE 353 (377)
T ss_dssp CGGGTGGGGGTCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 3334589999954 45556654
No 44
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.92 E-value=1.1e-25 Score=228.18 Aligned_cols=187 Identities=22% Similarity=0.302 Sum_probs=145.1
Q ss_pred HHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHH--HHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHH
Q 013241 87 IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEE--AVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAK 164 (447)
Q Consensus 87 ~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e--~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~ 164 (447)
.+.++++||+++......+. ++ .....++++||+||||..|++|.|+++|++.+||.++++.+.
T Consensus 156 k~~l~~~GIp~p~~~~~~~~--------------~~~~~~~~~~~lg~PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a~ 221 (373)
T 3lwb_A 156 KKLLAADGLPVGAYAVLRPP--------------RSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARAR 221 (373)
T ss_dssp HHHHHHTTCCBCCEEEECTT--------------CCCCCHHHHHHHCSCEEEEESBCSTTTTCEEECSGGGHHHHHHHHH
T ss_pred HHHHHHcCcCCCCEEEEECc--------------ccchhHHHHHhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHH
Confidence 45667889998887766554 21 123367899999999999999999999999999999988765
Q ss_pred HHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCC--cEEEEeeeeec--------cccccce-----eeEecCCCCCCHH
Q 013241 165 SEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYG--NVVHFGERDCS--------IQRRNQK-----LLEEAPSPALTPE 229 (447)
Q Consensus 165 ~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g--~vv~l~~r~~s--------~~~~~~k-----~~~~~P~~~l~~~ 229 (447)
.. +..++||+||+| +|++|.+++++.+ .+...++..+. +.++..| .....|+. ++++
T Consensus 222 ~~------~~~vlVEe~I~G-~E~~v~vl~~~~~~~~~~~~~ei~~~~~~~~~~~~~d~~~ky~~~~~~~~~Pa~-l~~~ 293 (373)
T 3lwb_A 222 RH------DPKVIVEAAISG-RELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAK-VDDQ 293 (373)
T ss_dssp TT------CSSEEEEECCEE-EEEEEEEEECTTSCEEECCCEEEECCSTTCSEESSSCHHHHHTCTTCEEESSCC-CCHH
T ss_pred hc------CCCEEEeCCCCC-eEEEEEEEECCCCceEEeeeeEEEccCCCCccccccchhhcccCCCceEEeCCC-CCHH
Confidence 43 478999999998 9999999998776 33333443332 3333222 23446887 9999
Q ss_pred HHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCc----cchhhhhcCCCHHHH---HHHHHc
Q 013241 230 LRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVE----HPVTEMISSVDLIEE---QIHVAM 296 (447)
Q Consensus 230 ~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~----~~v~e~~~GiDl~~~---~i~~a~ 296 (447)
+.+++.+.+.+++++||++|++++||+++++|+ ||+|||||++.. .|....++|+|+.+. +++.++
T Consensus 294 ~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~dg~-~vlEIN~~PG~t~~S~~p~~~~a~Gi~~~~li~~li~~a~ 366 (373)
T 3lwb_A 294 VAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGP-VINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETTL 366 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCCSEEEEEEEEETTEE-EEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCccEEEEEEEEECCCC-EEEEecCCCCCCcccHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998898 999999999854 233446889997665 455554
No 45
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.92 E-value=6.4e-24 Score=214.27 Aligned_cols=214 Identities=19% Similarity=0.241 Sum_probs=160.7
Q ss_pred CcEEEEecC---cHHHHHHHHHHHHcCCCee-----EEEeccChhhHHHHHhccccCH---------H-------HHHHH
Q 013241 71 QEKILVANR---GEIAVRVIRTAHEMGIPCV-----AVYSTIDKDALHVKLADESVCI---------E-------EAVKL 126 (447)
Q Consensus 71 ~~kvLianr---geia~ri~r~~~~lGi~~v-----av~~~~dk~~~~~~lad~~v~i---------~-------e~~~~ 126 (447)
++-|+..-. ||-+ .+...++.+|++.+ ++..+.||..++..+.+.++++ + ++.++
T Consensus 88 ~D~v~~~~~g~~~ed~-~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~ 166 (364)
T 2i87_A 88 YDAVFPLLHGPNGEDG-TIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLV 166 (364)
T ss_dssp CSEEEEECCCSSSCTT-HHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHHTCCCCCEEEEEHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCcCH-HHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEechhhcccchhHHHHH
Confidence 455555432 2322 35677888899864 2345689999999999988876 2 34556
Q ss_pred hhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeee
Q 013241 127 ADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGER 206 (447)
Q Consensus 127 ~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r 206 (447)
+++++||+||||..|+||+||++|++.+||..+++.+... +..++||+||+| +|+++.+++++.+.++..++.
T Consensus 167 ~~~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~------~~~~lvEe~I~G-~E~~v~vl~~~~~~~~~~~e~ 239 (364)
T 2i87_A 167 NDKLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQF------DRKLVIEQGVNA-REIEVAVLGNDYPEATWPGEV 239 (364)
T ss_dssp HHHCCSSEEEEESSCSSCTTCEEESSHHHHHHHHHHHHTT------CSEEEEEECCCC-EEEEEEEEESSSCEECCCEEE
T ss_pred HHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCeEEEEeCccC-eEEEEEEEcCCCcEEeeeEEE
Confidence 6789999999999999999999999999999998876431 478999999999 999999999865444433333
Q ss_pred ee--cccccccee-----eEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCcc---
Q 013241 207 DC--SIQRRNQKL-----LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEH--- 276 (447)
Q Consensus 207 ~~--s~~~~~~k~-----~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~--- 276 (447)
.+ .+.+...|+ ....|+. ++++..+++.+.+.+++++||+.|++++||+++++|++||+|||||+++..
T Consensus 240 ~~~~~~~~~~~k~~~g~~~~~~pa~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~g~~~viEiN~rpg~t~~s~ 318 (364)
T 2i87_A 240 VKDVAFYDYKSKYKDGKVQLQIPAD-LDEDVQLTLRNMALEAFKATDCSGLVRADFFVTEDNQIYINETNAMPGFTAFSM 318 (364)
T ss_dssp CCSCCC-----------CCEESSCS-SCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCSTTSH
T ss_pred ecCCCcCCHHHcccCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCEEEEEEeCCCCCCchhH
Confidence 22 122222222 2346776 899999999999999999999999999999999889999999999998742
Q ss_pred -chhhhhcCCCHHHHHHH
Q 013241 277 -PVTEMISSVDLIEEQIH 293 (447)
Q Consensus 277 -~v~e~~~GiDl~~~~i~ 293 (447)
+....++|+|+.+.+.+
T Consensus 319 ~p~~~~~~G~~~~~l~~~ 336 (364)
T 2i87_A 319 YPKLWENMGLSYPELITK 336 (364)
T ss_dssp HHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHH
Confidence 33345789998665443
No 46
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.92 E-value=5.8e-24 Score=210.46 Aligned_cols=202 Identities=19% Similarity=0.233 Sum_probs=150.0
Q ss_pred HHHHHHHHcCCCee-----EEEeccChhhHHHHHhccccCH---------HHHHHHh----hhhCCcEEEEeCCCCCCcC
Q 013241 85 RVIRTAHEMGIPCV-----AVYSTIDKDALHVKLADESVCI---------EEAVKLA----DELGFPVMIKATAGGGGRG 146 (447)
Q Consensus 85 ri~r~~~~lGi~~v-----av~~~~dk~~~~~~lad~~v~i---------~e~~~~~----~~ig~PvVvKP~~g~Gg~G 146 (447)
.+...++.+|++.+ +...+.||..++..+++.++++ +++.+++ ++++||+||||..|+||+|
T Consensus 82 ~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~~g~PvvvKP~~~~~s~G 161 (317)
T 4eg0_A 82 QIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYAARATDIVAKLGLPLFVKPASEGSSVA 161 (317)
T ss_dssp HHHHHHHHHTCEESSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEETTSCHHHHHHHHHHHHCSCEEEEECC-----C
T ss_pred HHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEEEEECchhHHHHHHHHHHhcCCCEEEEeCCCCCCCC
Confidence 45666777777754 2334567777777777777766 4455555 7899999999999999999
Q ss_pred eEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccC-CCceEEEEEEEeCCCcEEEEeeeeeccccccc-----eeeEe
Q 013241 147 MRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ-NPRHIEFQVLADKYGNVVHFGERDCSIQRRNQ-----KLLEE 220 (447)
Q Consensus 147 v~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~-G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~-----k~~~~ 220 (447)
+++|++.+|+.++++.+... +..++|||||+ | +|+++.+++|+.+.++.+.... .+..+.. .....
T Consensus 162 v~~v~~~~el~~a~~~~~~~------~~~~lvEe~i~~G-~E~~v~vl~~~~~~~~~i~~~~-~~~~~~~k~~~g~~~~~ 233 (317)
T 4eg0_A 162 VLKVKTADALPAALSEAATH------DKIVIVEKSIEGG-GEYTACIAGDLDLPLIKIVPAG-EFYDYHAKYVANDTQYL 233 (317)
T ss_dssp CEEECSGGGHHHHHHHHTTT------CSEEEEEECCCSS-EEEEEEEETTCCCCCEEEEC----------------CEEE
T ss_pred EEEECCHHHHHHHHHHHHhC------CCeEEEEcCCCCC-cEEEEEEECCcccceEEEeeCC-ceechhhcccCCCeeEE
Confidence 99999999999998765422 47899999999 7 9999999988666665543322 1222222 23455
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCc----cchhhhhcCCCHHHHHHHHH
Q 013241 221 APSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVE----HPVTEMISSVDLIEEQIHVA 295 (447)
Q Consensus 221 ~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~----~~v~e~~~GiDl~~~~i~~a 295 (447)
.|+. ++++..+++.+.+.++++++|++|++++||+++++|++||+|+|||++.. .|......|+|+.+.+.++.
T Consensus 234 ~P~~-l~~~~~~~l~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~vlEiN~~pg~t~~s~~p~~~~~~G~~~~~l~~~li 311 (317)
T 4eg0_A 234 IPCG-LPAEQETELKRIARRAFDVLGCTDWGRADFMLDAAGNAYFLEVNTAPGMTDHSLPPKAARSIGIGYSELVVKVL 311 (317)
T ss_dssp SSCS-SCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECTTCCEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCC-CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCCEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHH
Confidence 7876 99999999999999999999999999999999988999999999999854 23344578999998877764
No 47
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=99.90 E-value=1.9e-23 Score=207.45 Aligned_cols=200 Identities=15% Similarity=0.202 Sum_probs=137.2
Q ss_pred HHHHHHHHHHcCCCee-----EEEeccChhhHHHHHhccccCH-------HHHHHHh--hhhCCcEEEEeCCCCCCcCeE
Q 013241 83 AVRVIRTAHEMGIPCV-----AVYSTIDKDALHVKLADESVCI-------EEAVKLA--DELGFPVMIKATAGGGGRGMR 148 (447)
Q Consensus 83 a~ri~r~~~~lGi~~v-----av~~~~dk~~~~~~lad~~v~i-------~e~~~~~--~~ig~PvVvKP~~g~Gg~Gv~ 148 (447)
..++.+.+++.|++.+ ++..+.||..++..+.+.++++ +++.+++ +.++||+|+||..|+||+|++
T Consensus 87 ~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~ 166 (331)
T 2pn1_A 87 LAQATERFQAIGVTVIVSPYAACELCFDKYTMYEYCLRQGIAHARTYATMASFEEALAAGEVQLPVFVKPRNGSASIEVR 166 (331)
T ss_dssp HHHTHHHHHTTTCEECCCCHHHHHHHHBHHHHHHHHHHHTCCCCCEESSHHHHHHHHHTTSSCSCEEEEESBC-------
T ss_pred HHHHHHHHHhCCcEEecCCHHHHHHhhCHHHHHHHHHHcCCCCCcEEecHHHhhhhhhcccCCCCEEEEeCCCCCCCCeE
Confidence 3345666777788643 2335689999999999888876 5555555 478999999999999999999
Q ss_pred EECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEe-CCCcEEEEeeeeeccccccceeeEecCCCCCC
Q 013241 149 LAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLAD-KYGNVVHFGERDCSIQRRNQKLLEEAPSPALT 227 (447)
Q Consensus 149 ~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d-~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~ 227 (447)
++++.+|+.++++. ..++++||||+| +|+++.++.| .+|+++.+..+.+...+.. .. ...+.. .
T Consensus 167 ~v~~~~el~~~~~~----------~~~~lvee~i~G-~e~~v~~~~d~~~G~~~~~~~~~~~~~~~g-~~-~~~~~~-~- 231 (331)
T 2pn1_A 167 RVETVEEVEQLFSK----------NTDLIVQELLVG-QELGVDAYVDLISGKVTSIFIKEKLTMRAG-ET-DKSRSV-L- 231 (331)
T ss_dssp --------------------------CEEEEECCCS-EEEEEEEEECTTTCCEEEEEEEEEEEEETT-EE-EEEEEE-C-
T ss_pred EeCCHHHHHHHHHh----------CCCeEEEecCCC-cEEEEEEEEecCCCeEEEEEEEEEEEecCC-ce-eEeEEe-c-
Confidence 99999999887653 268999999999 9999999998 7788887665544322222 11 112211 2
Q ss_pred HHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCCCC
Q 013241 228 PELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRY 302 (447)
Q Consensus 228 ~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l~~ 302 (447)
.+++.+.+.++++++|+.|++++||+. .+|++||+|+|||+++..++ +..+|+|+++++++.++|.+++.
T Consensus 232 ---~~~~~~~~~~~~~~lg~~G~~~vd~~~-~~g~~~~iEiN~R~~g~~~~-~~~~G~~~~~~~~~~~~g~~~~~ 301 (331)
T 2pn1_A 232 ---RDDVFELVEHVLDGSGLVGPLDFDLFD-VAGTLYLSEINPRFGGGYPH-AYECGVNFPAQLYRNLMHEINVP 301 (331)
T ss_dssp ---CHHHHHHHHHHHTTTCCCEEEEEEEEE-ETTEEEEEEEESSCCTTHHH-HHHTTCCHHHHHHHHHTTCCCCC
T ss_pred ---cHHHHHHHHHHHHHhCCcceEEEEEEE-cCCCEEEEEEeCCCCCchHH-HHHcCCCHHHHHHHHHcCCCCCc
Confidence 256778999999999999999999995 46779999999999988764 67899999999999999998753
No 48
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.90 E-value=2.9e-23 Score=206.15 Aligned_cols=213 Identities=23% Similarity=0.293 Sum_probs=162.3
Q ss_pred CcEEEEecCcHHH--HHHHHHHHHcCCCee-----EEEeccChhhHHHHHhccccCH---------HHHHHHhhhhCCcE
Q 013241 71 QEKILVANRGEIA--VRVIRTAHEMGIPCV-----AVYSTIDKDALHVKLADESVCI---------EEAVKLADELGFPV 134 (447)
Q Consensus 71 ~~kvLianrgeia--~ri~r~~~~lGi~~v-----av~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~Pv 134 (447)
++-|+.+-.|..+ ..+...++.+|+|.+ +...+.||..++..+.+.++++ ++ +.. +++||+
T Consensus 77 ~D~v~~~~hg~~gedg~i~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~--~~~-~~g~Pv 153 (322)
T 2fb9_A 77 YDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWVAVRKGEP--PVV-PFDPPF 153 (322)
T ss_dssp CSEEEEECCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEETTSC--CCC-CSCSCE
T ss_pred CCEEEEeCCCCCCccHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEECchh--hhh-ccCCCE
Confidence 5566665433211 145667788898864 2335678999998888888876 22 112 689999
Q ss_pred EEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeee--cccc
Q 013241 135 MIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC--SIQR 212 (447)
Q Consensus 135 VvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~--s~~~ 212 (447)
||||..|++|+|+++|++.+|+.++++.+... +..++|||||+|.+|+++.+++++.+.+...++... .+.+
T Consensus 154 vvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~------~~~vlvEe~I~G~~E~~v~vl~~~~~~~~~~~ei~~~~~~~~ 227 (322)
T 2fb9_A 154 FVKPANTGSSVGISRVERFQDLEAALALAFRY------DEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYEAPFYD 227 (322)
T ss_dssp EEEETTCCTTTTCEEESSHHHHHHHHHHHTTT------CSEEEEEECCSSCEEEEEEEESSSSCEEEEEEEEEEECCEEE
T ss_pred EEEeCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCeEEEEeCCCCCeeEEEEEEeCCCceEeeeEEEeeCCCccC
Confidence 99999999999999999999999988775432 478999999998789999999876655665555432 2333
Q ss_pred cccee-----eEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCcc----chhhhhc
Q 013241 213 RNQKL-----LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEH----PVTEMIS 283 (447)
Q Consensus 213 ~~~k~-----~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~----~v~e~~~ 283 (447)
...|+ ....|+. ++++..+++.+.+.++++++|++|++++||+++ +|++||+|+|+|++... |....++
T Consensus 228 ~~~k~~~g~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~-~g~~~vlEiN~rpg~t~~s~~p~~~~~~ 305 (322)
T 2fb9_A 228 YETKYTPGRAELLIPAP-LDPGTQETVQELALKAYKVLGVRGMARVDFFLA-EGELYLNELNTIPGFTPTSMYPRLFEAG 305 (322)
T ss_dssp TTTEEECCEEEEESSCC-CCTTHHHHHHHHHHHHHHHHTCCSEEEEEEEEE-TTEEEEEEEESSCCCSSSCHHHHHHHHT
T ss_pred HHHcccCCCeEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEE-CCcEEEEEEECCCCCCcccHHHHHHHHh
Confidence 33333 2346876 899999999999999999999999999999999 88999999999998752 2234578
Q ss_pred CCCHHHHHHHH
Q 013241 284 SVDLIEEQIHV 294 (447)
Q Consensus 284 GiDl~~~~i~~ 294 (447)
|+|+.+.+.++
T Consensus 306 G~~~~~l~~~l 316 (322)
T 2fb9_A 306 GVAYPELLRRL 316 (322)
T ss_dssp TCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99988876654
No 49
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.90 E-value=5.8e-23 Score=201.88 Aligned_cols=213 Identities=22% Similarity=0.305 Sum_probs=149.4
Q ss_pred CcEEEEecCcHHH--HHHHHHHHHcCCCee-----EEEeccChhhHHHHHhccccCH---------HHHHH-HhhhhCCc
Q 013241 71 QEKILVANRGEIA--VRVIRTAHEMGIPCV-----AVYSTIDKDALHVKLADESVCI---------EEAVK-LADELGFP 133 (447)
Q Consensus 71 ~~kvLianrgeia--~ri~r~~~~lGi~~v-----av~~~~dk~~~~~~lad~~v~i---------~e~~~-~~~~ig~P 133 (447)
++-|++.-.|..+ ..+...++.+|++.+ +...+.||..++..+.+.++++ +++.. +++.++||
T Consensus 56 ~D~v~~~~~~~~ge~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~P 135 (307)
T 3r5x_A 56 IDFALLALHGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLNFDELDKLGFP 135 (307)
T ss_dssp CSEEEECCCSHHHHSSHHHHHHHHHTCCBSSSCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEESSSCCCHHHHHHHCSS
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEeChhhhhHHHHHhcCCC
Confidence 4555554444321 133455666777644 2234567777777777777666 33332 66789999
Q ss_pred EEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccc--
Q 013241 134 VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ-- 211 (447)
Q Consensus 134 vVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~-- 211 (447)
+||||..|+||+|++++++.+|+.++++.+... +.+++|||||+| +|+++.++.+ +++.+....+...
T Consensus 136 ~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~------~~~~lvee~i~G-~e~~v~v~~g---~~~~~~~~~~~~~~~ 205 (307)
T 3r5x_A 136 LVVKPNSGGSSVGVKIVYDKDELISMLETVFEW------DSEVVIEKYIKG-EEITCSIFDG---KQLPIISIRHAAEFF 205 (307)
T ss_dssp EEEEECC----CCCEEECSHHHHHHHHHHHHHH------CSEEEEEECCCS-EEEEEEEETT---EECCCEEEEEEEEEE
T ss_pred EEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCCEEEECCcCC-EEEEEEEECC---EEeeEEEEEcCCccc
Confidence 999999999999999999999999999887653 479999999999 9999999732 4432222222111
Q ss_pred ccccee----eEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCc----cchhhhhc
Q 013241 212 RRNQKL----LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVE----HPVTEMIS 283 (447)
Q Consensus 212 ~~~~k~----~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~----~~v~e~~~ 283 (447)
....++ ....|+. ++++..+++.+.+.++++++|++|++++||+++ +|++||+|+|+|++.. .+.....+
T Consensus 206 ~~~~~~~~~g~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~-~g~~~vlEiN~rpg~~~~s~~~~~~~~~ 283 (307)
T 3r5x_A 206 DYNAKYDDASTIEEVIE-LPAELKERVNKASLACYKALKCSVYARVDMMVK-DGIPYVMEVNTLPGMTQASLLPKSADAA 283 (307)
T ss_dssp TTEEEEEEEEEEEEECC-CCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEE-TTEEEEEEEESSCCCSTTSHHHHHHHHT
T ss_pred ChhhcCCCCCCeEecCC-CCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEE-CCeEEEEEEcCCCCCCccCHHHHHHHHc
Confidence 222222 2233675 999999999999999999999999999999999 5889999999999864 23445688
Q ss_pred CCCHHHHHHHHH
Q 013241 284 SVDLIEEQIHVA 295 (447)
Q Consensus 284 GiDl~~~~i~~a 295 (447)
|+|+.+.+.++.
T Consensus 284 G~~~~~li~~ll 295 (307)
T 3r5x_A 284 GIHYSKLLDMII 295 (307)
T ss_dssp TCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999987666543
No 50
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.90 E-value=3.9e-23 Score=206.82 Aligned_cols=213 Identities=19% Similarity=0.281 Sum_probs=159.3
Q ss_pred CcEEEEecCc---HHHHHHHHHHHHcCCCee-----EEEeccChhhHHHHHhccccCH---------HHHHHHhhhhCCc
Q 013241 71 QEKILVANRG---EIAVRVIRTAHEMGIPCV-----AVYSTIDKDALHVKLADESVCI---------EEAVKLADELGFP 133 (447)
Q Consensus 71 ~~kvLianrg---eia~ri~r~~~~lGi~~v-----av~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~P 133 (447)
++-|+.+-.| |-+ .+...++.+|+|.+ +...+.||..++..+.+.++++ +++. .++++||
T Consensus 91 ~D~v~~~~~g~~ged~-~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~--~~~~~~P 167 (343)
T 1e4e_A 91 VDVAFSALHGKSGEDG-SIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPV--AATFTYP 167 (343)
T ss_dssp CSEEEECCCSTTTTSS-HHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEEECTTCCCC--GGGSCSC
T ss_pred CCEEEEeCCCCCCcCH-HHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCcCCEEEEechhhhh--hhccCCC
Confidence 4555555332 222 35677788898854 2334589999999998888776 2221 1678999
Q ss_pred EEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEE--eeeeec--
Q 013241 134 VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF--GERDCS-- 209 (447)
Q Consensus 134 vVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l--~~r~~s-- 209 (447)
+||||..|+||+|+++|++.+|+..+++.+... +.+++||+||+| +|+++.++.++.+ +..+ .+..+.
T Consensus 168 vvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~------~~~~lvEe~I~G-~E~~v~vl~~~~~-~~~~~~~ei~~~~~ 239 (343)
T 1e4e_A 168 VFVKPARSGSSFGVKKVNSADELDYAIESARQY------DSKILIEQAVSG-CEVGCAVLGNSAA-LVVGEVDQIRLQYG 239 (343)
T ss_dssp EEEEESSCCTTTTCEEECSGGGHHHHHHHHTTT------CSSEEEEECCCS-EEEEEEEEEETTC-CEECCCEEEEESSS
T ss_pred EEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCcEEEEeCcCC-eEEEEEEEeCCCC-eEEeeeEEEeeCCC
Confidence 999999999999999999999999988775432 478999999998 9999999998654 2222 222211
Q ss_pred ccccc---------ceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCcc----
Q 013241 210 IQRRN---------QKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEH---- 276 (447)
Q Consensus 210 ~~~~~---------~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~---- 276 (447)
+.+.. .......|+. ++++..+++.+.+.+++++||+.|++++||++|++|++||+|+|+|++...
T Consensus 240 ~~~~~~k~~~~~~~g~~~~~~p~~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~g~~~viEiN~rpg~t~~s~~ 318 (343)
T 1e4e_A 240 IFRIHQEVEPEKGSENAVITVPAD-LSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRY 318 (343)
T ss_dssp CCCGGGSSSGGGCCSSEEECSSCS-SCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCEEEEEEESSCCCSTTCHH
T ss_pred ccCHhhcccccCCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCCEEEEEeeCCCCCCcccHH
Confidence 11111 1223456776 899999999999999999999999999999999889999999999998752
Q ss_pred chhhhhcCCCHHHHHHHHH
Q 013241 277 PVTEMISSVDLIEEQIHVA 295 (447)
Q Consensus 277 ~v~e~~~GiDl~~~~i~~a 295 (447)
+....++|+|+.+.+.++.
T Consensus 319 p~~~~~~G~~~~~l~~~li 337 (343)
T 1e4e_A 319 PRMMAAAGISLPELIDRLI 337 (343)
T ss_dssp HHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHH
Confidence 3344567999988876653
No 51
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.90 E-value=3.3e-23 Score=207.71 Aligned_cols=201 Identities=18% Similarity=0.247 Sum_probs=151.0
Q ss_pred HHHHHHHHcCCCeeE-----EEeccChhhHHHHHhccccCH--------HHHHHHhhhhCCcEEEEeCCCCCCcCeEEEC
Q 013241 85 RVIRTAHEMGIPCVA-----VYSTIDKDALHVKLADESVCI--------EEAVKLADELGFPVMIKATAGGGGRGMRLAK 151 (447)
Q Consensus 85 ri~r~~~~lGi~~va-----v~~~~dk~~~~~~lad~~v~i--------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~ 151 (447)
.+...++.+|+|.+. ...+.||..++..+++.++++ .+ ....++++||+||||..|++|+|+++|+
T Consensus 107 ~iq~~le~~gip~~g~~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~-~~~~~~lg~PvvvKP~~~~~s~Gv~~v~ 185 (346)
T 3se7_A 107 AIQGLLELSGIPYVGCDIQSSALCMDKSLTYLVARSAGIATPNFWTVTADE-KIPTDQLTYPVFVKPARSGSSFGVSKVA 185 (346)
T ss_dssp HHHHHHHHHCCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEEEETTS-CCCTTTCCSSEEEEESSCCTTTTCEEEC
T ss_pred HHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHcCcCcCCEEEEcCcH-HHHHHhcCCCEEEEeCCCCCCcCEEEEC
Confidence 455677778887442 234568888888888887776 12 3345678999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCc-EEEEeeeeec--c----ccccce-----eeE
Q 013241 152 EPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGN-VVHFGERDCS--I----QRRNQK-----LLE 219 (447)
Q Consensus 152 ~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~-vv~l~~r~~s--~----~~~~~k-----~~~ 219 (447)
+.+|+.++++.+... +..++|||||+| +|++|.++.++.+. +..+.+..+. + |++..+ ...
T Consensus 186 ~~~el~~a~~~~~~~------~~~vlvEe~I~G-~E~~v~vl~~~~~~~~~~~~e~~~~~~~~d~~q~~~~ky~~~~~~~ 258 (346)
T 3se7_A 186 REEDLQGAVEAAREY------DSKVLIEEAVIG-TEIGCAVMGNGPELITGEVDQITLSHGFFKIHQESTPESGSDNSAV 258 (346)
T ss_dssp SHHHHHHHHHHHTTT------CSEEEEEECCCS-EEEEEEEEEETTEEEECCCEEECCC--------------CGGGSCE
T ss_pred CHHHHHHHHHHHHhC------CCcEEEEeCcCC-EEEEEEEEecCCCeEEEeeEEEecCCCCcCcccchhccccCCCeeE
Confidence 999999998876432 478999999998 99999999986542 2222222111 1 111222 234
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCc----cchhhhhcCCCHHHHHHHH
Q 013241 220 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVE----HPVTEMISSVDLIEEQIHV 294 (447)
Q Consensus 220 ~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~----~~v~e~~~GiDl~~~~i~~ 294 (447)
..|+. ++++..+++.+.+.++++++|++|++++||+++++|++||+|+|+|++.. .+....++|+|+.+.+.++
T Consensus 259 ~~pa~-l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~vlEiN~rPG~t~~s~~p~~~~~~G~~~~~l~~~l 336 (346)
T 3se7_A 259 TVPAD-ISTTSRSLVQDTAKAVYRALGCRGLSRVDLFLTEDGKVVLNEVNTFPGMTSYSRYPRMMTAAGLSRADVIDRL 336 (346)
T ss_dssp ESSCC-CCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECTTSCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHH
T ss_pred EeCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEeCCCCEEEEEEeCCCCCCcccHHHHHHHHhCCCHHHHHHHH
Confidence 56776 99999999999999999999999999999999988999999999999863 2333468899998866544
No 52
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.90 E-value=8.9e-23 Score=199.89 Aligned_cols=200 Identities=19% Similarity=0.307 Sum_probs=154.0
Q ss_pred HHHHHHHcCCCee-----EEEeccChhhHHHHHhccccCH--------HHHHH--------HhhhhCCcEEEEeCCCCCC
Q 013241 86 VIRTAHEMGIPCV-----AVYSTIDKDALHVKLADESVCI--------EEAVK--------LADELGFPVMIKATAGGGG 144 (447)
Q Consensus 86 i~r~~~~lGi~~v-----av~~~~dk~~~~~~lad~~v~i--------~e~~~--------~~~~ig~PvVvKP~~g~Gg 144 (447)
+...++.+|++.+ ++..+.||..++..+.+.++++ .++.+ ++++++||+|+||..|+||
T Consensus 72 ~~~~~e~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gi~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vvKP~~g~~~ 151 (306)
T 1iow_A 72 LQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSS 151 (306)
T ss_dssp HHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEEEHHHHHHCCCTHHHHHHHTTCSSEEEEETTCCTT
T ss_pred HHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCeEEEchhhhhccchhhhhhHHhccCCCEEEEeCCCCCC
Confidence 3456777888753 2234679999999998888876 34444 5678999999999999999
Q ss_pred cCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeee-----eccccc--ccee
Q 013241 145 RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD-----CSIQRR--NQKL 217 (447)
Q Consensus 145 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~-----~s~~~~--~~k~ 217 (447)
+|++++++.+|+.++++.+.. + +.++++||||+| +|+++.++ + |+++...... +.+... ....
T Consensus 152 ~gv~~v~~~~el~~~~~~~~~-----~-~~~~lvee~i~g-~e~~v~~~-~--g~~~~~~~~~~~~~~~~~~~~~~~g~~ 221 (306)
T 1iow_A 152 VGMSKVVAENALQDALRLAFQ-----H-DEEVLIEKWLSG-PEFTVAIL-G--EEILPSIRIQPSGTFYDYEAKFLSDET 221 (306)
T ss_dssp TTCEEESSGGGHHHHHHHHTT-----T-CSEEEEEECCCC-CEEEEEEE-T--TEECCCEEEECSSSSSCHHHHHTCSCC
T ss_pred CCEEEeCCHHHHHHHHHHHHh-----h-CCCEEEEeCcCC-EEEEEEEE-C--CCccceEEEEeCCCeEchhheecCCCe
Confidence 999999999999998876532 2 478999999998 99999999 2 3443322211 011000 1123
Q ss_pred eEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCcc----chhhhhcCCCHHHHHHH
Q 013241 218 LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEH----PVTEMISSVDLIEEQIH 293 (447)
Q Consensus 218 ~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~----~v~e~~~GiDl~~~~i~ 293 (447)
....|+. ++++..+++.+.+.++++++|+.|++++||+++++|++||+|+|+|+++.. +.....+|+|+.+.+++
T Consensus 222 ~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~~iEiN~rpg~~~~s~~p~~~~~~G~~~~~~~~~ 300 (306)
T 1iow_A 222 QYFCPAG-LEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 (306)
T ss_dssp EEESSCC-CCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECTTSCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHH
T ss_pred eEEcCCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEcCCCCEEEEEecCCCCCCCCCHHHHHHHHcCCCHHHHHHH
Confidence 4556776 899999999999999999999999999999999889999999999998752 23456789999999988
Q ss_pred HHc
Q 013241 294 VAM 296 (447)
Q Consensus 294 ~a~ 296 (447)
+..
T Consensus 301 ~~~ 303 (306)
T 1iow_A 301 ILE 303 (306)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 53
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=99.88 E-value=9.1e-22 Score=198.80 Aligned_cols=214 Identities=14% Similarity=0.154 Sum_probs=156.2
Q ss_pred CcEEEEecCcHHHH--HHHHHHHHcCCCee-----EEEeccChhhHHHHHhccccCH---------H--HHHHHhhhhCC
Q 013241 71 QEKILVANRGEIAV--RVIRTAHEMGIPCV-----AVYSTIDKDALHVKLADESVCI---------E--EAVKLADELGF 132 (447)
Q Consensus 71 ~~kvLianrgeia~--ri~r~~~~lGi~~v-----av~~~~dk~~~~~~lad~~v~i---------~--e~~~~~~~ig~ 132 (447)
++-|+.+-.|..+. .+...++.+|+|.+ +...+.||..++..+++.++++ + ++.+ ++++||
T Consensus 108 ~D~v~~~lhg~~gedg~i~~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~-~~~lg~ 186 (367)
T 2pvp_A 108 LPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDYVLLNEKNRANALD-LMNFNF 186 (367)
T ss_dssp CCSEEECCCSTTTTSSHHHHHHHHTTCCEESCCHHHHHHHHSHHHHHHHHHHHTCBCCCCEEECTTTGGGHHH-HCCSCS
T ss_pred CCEEEEcCCCCCccHHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCcCCCCEEEEeCCchHHHHH-HhccCC
Confidence 44555554432221 46677888899864 2345678999999888888776 2 5666 778999
Q ss_pred cEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEE-EEEEEeCCCcEEEEeeeee---
Q 013241 133 PVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIE-FQVLADKYGNVVHFGERDC--- 208 (447)
Q Consensus 133 PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~-v~vl~d~~g~vv~l~~r~~--- 208 (447)
|+||||..|+||.|+++|++.+||.++++.+.. + +..++|||||+|.+|++ +.+.. +|+++....+..
T Consensus 187 PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~~-----~-~~~vlVEe~I~G~~E~svi~v~v--~g~~~~~~~ei~~~~ 258 (367)
T 2pvp_A 187 PFIVKPSNAGSSLGVNVVKEEKELIYALDSAFE-----Y-SKEVLIEPFIQGVKEYNLAGCKI--KKDFCFSYIEEPNKQ 258 (367)
T ss_dssp CEEEEESSCCTTTTCEEESSTTSHHHHHHHHTT-----T-CSCEEEEECCTTCEEEEEEEEEE--TTEEEEEEEEETTTT
T ss_pred CEEEEECCCCCCCCEEEECCHHHHHHHHHHHHh-----c-CCcEEEEeCCCCCceeeEEEEEE--CCEEEEEEEEEecCC
Confidence 999999999999999999999999999887643 2 47899999999878855 33333 345433322111
Q ss_pred ccccccceee-----EecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccc-hhhhh
Q 013241 209 SIQRRNQKLL-----EEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHP-VTEMI 282 (447)
Q Consensus 209 s~~~~~~k~~-----~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~-v~e~~ 282 (447)
.+.++..++. ...|+. ++++..+++.+.+.+++++||+.|++++||+++ +|++||+|+|||+++... +..
T Consensus 259 ~~~d~~~ky~~g~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~-~g~~~vlEiN~rpg~t~~s~~p-- 334 (367)
T 2pvp_A 259 EFLDFKQKYLDFSRNKAPKAS-LSNALEEQLKENFKKLYSDLFDGAIIRCDFFVI-ENEVYLNEINPIPGSLANYLFD-- 334 (367)
T ss_dssp EEECCCCSSCCSCCCSCCCCC-CCHHHHHHHHHHHHHHHTTTSTTCCEEEEEEEE-TTEEEEEEEESSCGGGGGGGSS--
T ss_pred ceEcccccccCCCeeEEecCC-CCHHHHHHHHHHHHHHHHHcCCCCEEEEEEEEE-CCeEEEEEEeCCCCCCcccccC--
Confidence 1122222222 345776 899999999999999999999999999999999 788999999999987422 222
Q ss_pred cCCCHHHHHHHHHcCCCC
Q 013241 283 SSVDLIEEQIHVAMGGKL 300 (447)
Q Consensus 283 ~GiDl~~~~i~~a~G~~l 300 (447)
|+.+...++..+.++
T Consensus 335 ---~~~~l~~~li~~~~~ 349 (367)
T 2pvp_A 335 ---DFKTTLENLAQSLPK 349 (367)
T ss_dssp ---SHHHHHHHHHHHCC-
T ss_pred ---CHHHHHHHHHhCccc
Confidence 888888888877555
No 54
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.87 E-value=8.2e-22 Score=190.22 Aligned_cols=204 Identities=24% Similarity=0.345 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHcCCCeeE----EEeccChhhHHHHHhccccCH---------HHHHHHhhhhCCcEEEEeCCCCCCcCe
Q 013241 81 EIAVRVIRTAHEMGIPCVA----VYSTIDKDALHVKLADESVCI---------EEAVKLADELGFPVMIKATAGGGGRGM 147 (447)
Q Consensus 81 eia~ri~r~~~~lGi~~va----v~~~~dk~~~~~~lad~~v~i---------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv 147 (447)
.....+.+.++++|++... +..+.||..++..+.+.++++ +++.+++++++||+|+||..|+||+|+
T Consensus 60 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gi~~p~~~~~~~~~~~~~~~~~~~~p~vvKp~~g~~~~gv 139 (280)
T 1uc8_A 60 SRGLAAARYLTALGIPVVNRPEVIEACGDKWATSVALAKAGLPQPKTALATDREEALRLMEAFGYPVVLKPVIGSWGRLL 139 (280)
T ss_dssp HHHHHHHHHHHHTTCCEESCHHHHHHHHBHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHCSSEEEECSBCCBCSHH
T ss_pred hhhHHHHHHHHHCCCceeCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEeeCCHHHHHHHHHHhCCCEEEEECCCCCcccc
Confidence 3445677778888887642 224578888888888888776 677788888999999999999999999
Q ss_pred EEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCC-CceEEEEEEEeCCCcEEEEeeeeec-cccccceeeEecCCCC
Q 013241 148 RLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-PRHIEFQVLADKYGNVVHFGERDCS-IQRRNQKLLEEAPSPA 225 (447)
Q Consensus 148 ~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G-~~ei~v~vl~d~~g~vv~l~~r~~s-~~~~~~k~~~~~P~~~ 225 (447)
+++++.+|+.++++.+.. ...+.+.++++||||+| ..++++.+++ |+++....+... +...........|..
T Consensus 140 ~~v~~~~el~~~~~~~~~--~~~~~~~~~lvqe~i~~~~~e~~v~v~~---~~~~~~~~~~~~~~~~~~~~g~~~~p~~- 213 (280)
T 1uc8_A 140 AXXXXXXXXXXXXXXKEV--LGGFQHQLFYIQEYVEKPGRDIRVFVVG---ERAIAAIYRRSAHWITNTARGGQAENCP- 213 (280)
T ss_dssp HHHHHHHC--------------CTTTTCEEEEECCCCSSCCEEEEEET---TEEEEEEEC--------------CEECC-
T ss_pred eecccccccchhhhhHhh--hcccCCCcEEEEeccCCCCceEEEEEEC---CEEEEEEEEecCCccccccCCccccCCC-
Confidence 999999999988776411 11112578999999997 5788888772 344433222100 000000011123443
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCC
Q 013241 226 LTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGG 298 (447)
Q Consensus 226 l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~ 298 (447)
+++ ++.+.+.++++++|+ |.+++||+++++| +||+|+|||+++.. ++..+|+|+.+.+++.++|+
T Consensus 214 l~~----~~~~~~~~~~~~lg~-g~~~vD~~~~~~g-~~~iEiN~r~g~~~--~~~~~G~~~~~~~~~~~~~~ 278 (280)
T 1uc8_A 214 LTE----EVARLSVKAAEAVGG-GVVAVDLFESERG-LLVNEVNHTMEFKN--SVHTTGVDIPGEILKYAWSL 278 (280)
T ss_dssp CCH----HHHHHHHHHHHHTTC-SEEEEEEEEETTE-EEEEEEETTCCCTT--HHHHHCCCHHHHHHHHHHHT
T ss_pred CCH----HHHHHHHHHHHHhCC-CeEEEEEEEeCCC-eEEEEEeCCCCccc--hheeeccCHHHHHHHHHHhh
Confidence 443 788999999999999 9999999999887 99999999997654 57899999999999998874
No 55
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.83 E-value=1.3e-20 Score=185.57 Aligned_cols=196 Identities=16% Similarity=0.232 Sum_probs=144.4
Q ss_pred CCcEEEEecCcHH--HHHHHHHHHHcC----CCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCC
Q 013241 70 RQEKILVANRGEI--AVRVIRTAHEMG----IPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGG 143 (447)
Q Consensus 70 ~~~kvLianrgei--a~ri~r~~~~lG----i~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~G 143 (447)
.++-+++..-+|- -..+.+.++..| -...++..+.||..++..+.+ ++++.... ..+++||+|+||..|+|
T Consensus 69 ~~D~~~~i~~~ed~~l~~~~~~l~~~g~~~g~~~~~~~~~~dK~~~~~~l~~-Gip~p~~~--~~~~~~P~vvKP~~g~g 145 (305)
T 3df7_A 69 KSDAFLIIAPEDDFLLYTLTKKAEKYCENLGSSSRAIAVTSDKWELYKKLRG-EVQVPQTS--LRPLDCKFIIKPRTACA 145 (305)
T ss_dssp TCSEEEEECCCGGGHHHHHHHHHHTTSEESSCCHHHHHHHTSHHHHHHHHTT-TSCCCCEE--SSCCSSSEEEEESSCC-
T ss_pred hcCEEEEEccCCcHHHHHHHHHHHhcCCccCCCHHHHHHhcCHHHHHHHHHh-CCCCCCEe--cccCCCCEEEEeCCCCC
Confidence 4666776654433 234566666655 112244467899999999998 88762211 14689999999999999
Q ss_pred CcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCC
Q 013241 144 GRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPS 223 (447)
Q Consensus 144 g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~ 223 (447)
|+|++++++ .+..+++||||+| +|+++.++.++ .+..+.... .............|+
T Consensus 146 s~Gv~~v~~-------------------~~~~~lvEe~I~G-~e~sv~v~~g~--~~~~~~~~~-~~~~~~~~~g~~~p~ 202 (305)
T 3df7_A 146 GEGIGFSDE-------------------VPDGHIAQEFIEG-INLSVSLAVGE--DVKCLSVNE-QIINNFRYAGAVVPA 202 (305)
T ss_dssp ---CBCCSS-------------------CCTTEEEEECCCS-EEEEEEEEESS--SEEEEEEEE-EEEETTEEEEEEESC
T ss_pred CCCEEEEec-------------------CCCCEEEEeccCC-cEEEEEEEeCC--eEEEEEEee-EeccCceeccccccC
Confidence 999999998 1478999999998 99999999843 444443211 111111112335677
Q ss_pred CCCCHHHHHHHHHHHHHHHHHc-CCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHH
Q 013241 224 PALTPELRKAMGDAAVAAAASI-GYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHV 294 (447)
Q Consensus 224 ~~l~~~~~~~l~~~a~~i~~al-g~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~ 294 (447)
. ++++..+++.+.+.++++++ |+.|++++||+++ |++||+|||||++++...++.++|+|+.++++++
T Consensus 203 ~-l~~~~~~~i~~~a~~~~~~l~g~~G~~~vD~~~~--~~~~viEiNpR~~~~~~~~~~~~G~~~~~~~~~~ 271 (305)
T 3df7_A 203 R-ISDEVKREVVEEAVRAVECVEGLNGYVGVDIVYS--DQPYVIEINARLTTPVVAFSRAYGASVADLLAGG 271 (305)
T ss_dssp C-CCHHHHHHHHHHHHHHHTTSTTCCEEEEEEEEES--SSEEEEEEESSCCGGGGGHHHHHSCCHHHHHTTC
T ss_pred C-CCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEC--CCEEEEEEcCCCCCCHHHHHHHHCCCHHHHHHhc
Confidence 5 89999999999999999999 9999999999996 5699999999999987777889999999999988
No 56
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.82 E-value=9.1e-20 Score=180.62 Aligned_cols=194 Identities=19% Similarity=0.248 Sum_probs=131.8
Q ss_pred cCcH-HHHHHHHHHHHcCCCeeE----EEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEEECC
Q 013241 78 NRGE-IAVRVIRTAHEMGIPCVA----VYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKE 152 (447)
Q Consensus 78 nrge-ia~ri~r~~~~lGi~~va----v~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~ 152 (447)
..+| ......+.++++|++... +..+.||..++..+.+.++++.....-.++++||+||||..|+||+|+++|++
T Consensus 68 ~~~e~~~~~~~~~le~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~l~~P~vvKP~~g~~s~Gv~~v~~ 147 (334)
T 2r85_A 68 PTGSFVAHLGIELVENMKVPYFGNKRVLRWESDRNLERKWLKKAGIRVPEVYEDPDDIEKPVIVKPHGAKGGKGYFLAKD 147 (334)
T ss_dssp CCTTHHHHHCHHHHHTCCSCBBSCTTHHHHHHSHHHHHHHHHHTTCCCCCBCSCGGGCCSCEEEEECC----TTCEEESS
T ss_pred ECcchhhhhHHHHHHHcCCCccCCHHHHHHHHhHHHHHHHHHHcCCCCCCccCChHHcCCCEEEEeCCCCCCCCEEEECC
Confidence 3344 444445566788987632 23457888888888888876622112234578999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCCcEEEeeccCCCceEEEEEEEeCCCc-EEEEe-eeeeccc-----c-----c-c---c
Q 013241 153 PDEFVKLLQQAKSEAAAAF-GNDGVYLEKYVQNPRHIEFQVLADKYGN-VVHFG-ERDCSIQ-----R-----R-N---Q 215 (447)
Q Consensus 153 ~~el~~~~~~~~~~~~~~~-~~~~~lvEefI~G~~ei~v~vl~d~~g~-vv~l~-~r~~s~~-----~-----~-~---~ 215 (447)
.+|+..+++.+.... .| ....++|||||+| .++++.++.+..+. +-.+. ...+..+ + . . .
T Consensus 148 ~~el~~~~~~~~~~~--~~~~~~~~lvee~i~G-~e~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 224 (334)
T 2r85_A 148 PEDFWRKAEKFLGIK--RKEDLKNIQIQEYVLG-VPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMD 224 (334)
T ss_dssp HHHHHHHHHHHHCCC--SGGGCCSEEEEECCCC-EEEEEEEEEETTTTEEEEEEEEEEEEEEGGGGGGSCHHHHTTSCCC
T ss_pred HHHHHHHHHHHHhhc--ccCCCCcEEEEeccCC-ceeEEEEeecCcCceeeeeeeccEEEeccCcccccccccccccccC
Confidence 999998887654220 11 1378999999999 88887776653322 22111 1111110 0 0 0 0
Q ss_pred eeeEec---CCCCCCHHHHHHHHHHHHHHHHHc-----CCccEeEEEEEEecCCCEEEEEEeccCCCc
Q 013241 216 KLLEEA---PSPALTPELRKAMGDAAVAAAASI-----GYIGVGTVEFLLDERGSFYFMEMNTRIQVE 275 (447)
Q Consensus 216 k~~~~~---P~~~l~~~~~~~l~~~a~~i~~al-----g~~G~~~vEf~~d~~G~~~~iEiNpR~~g~ 275 (447)
...... |+. ++++..+++.+.+.++++++ ++.|++++||+++++|++||+|+|||++++
T Consensus 225 ~~~~~~g~~p~~-l~~~~~~~i~~~a~~~~~~l~~~~~~~~G~~~vd~~~~~~g~~~viEiN~R~g~~ 291 (334)
T 2r85_A 225 ITYTVIGNIPIV-LRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISARIVAG 291 (334)
T ss_dssp CCEEEEEEEECC-CCGGGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECTTSCEEEEEEECSCCGG
T ss_pred CceeeeCCCCcc-cCHHHHHHHHHHHHHHHHHHHhhcccccccEEEEEEECCCCCEEEEEEeCCcCCC
Confidence 011122 665 88888999999999999999 889999999999988889999999999985
No 57
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=99.76 E-value=1.5e-17 Score=167.26 Aligned_cols=184 Identities=17% Similarity=0.213 Sum_probs=119.9
Q ss_pred HcCCCeeEE----EeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHH
Q 013241 92 EMGIPCVAV----YSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEA 167 (447)
Q Consensus 92 ~lGi~~vav----~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~ 167 (447)
++|+++... ....|+...+..+.+.+++......-.++++||+||||..+++|+|+++++|.+|+.++++.+....
T Consensus 107 ~~g~~v~g~~~a~~~e~~k~~~k~~l~~~GIptp~~~~~~~e~~~PvVVK~~~~a~GkGv~v~~s~ee~~~a~~~~~~~~ 186 (361)
T 2r7k_A 107 SFLVPMFGNRRILRWESERSLEGKLLREAGLRVPKKYESPEDIDGTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRG 186 (361)
T ss_dssp TCCSCBBSCGGGGGTTTCHHHHHHHHHHTTCCCCCEESSGGGCCSCEEEECSCCCC---EEEESSHHHHHHHHHHHHHTT
T ss_pred HcCCCcCCCHHHHHHhhhHHHHHHHHHHcCcCCCCEeCCHHHcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhcc
Confidence 566654321 1134444455555555655521111123447999999999999999999999999999987764321
Q ss_pred HHhcC---CCcEEEeeccCCCceEEEEEEEeC-CC--cEEEEeeeeec-------cccc-------c--ceeeEecCCCC
Q 013241 168 AAAFG---NDGVYLEKYVQNPRHIEFQVLADK-YG--NVVHFGERDCS-------IQRR-------N--QKLLEEAPSPA 225 (447)
Q Consensus 168 ~~~~~---~~~~lvEefI~G~~ei~v~vl~d~-~g--~vv~l~~r~~s-------~~~~-------~--~k~~~~~P~~~ 225 (447)
.|+ ..+++|||||+| .++++..+..- .+ +++.+..|..+ +..+ . .-+....|+.
T Consensus 187 --~~~~~~~~~viIEEfl~G-~e~s~~~f~~~~~~~~e~~~id~r~~~~~dgi~~~~~~~~~~~~~~p~~v~~G~~Pa~- 262 (361)
T 2r7k_A 187 --ILTDEDIANAHIEEYVVG-TNFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPAKDQLEMNINPSYVITGNIPVV- 262 (361)
T ss_dssp --SCCHHHHHHCEEEECCCS-EEEEEEEEEETTTTEEEEEEEEEEEEEEHHHHTTSCHHHHHTCCCCCCEEEEEEEECC-
T ss_pred --ccccCCCCeEEEEeccce-EEeeEEEEecccCCeeEEEEecceEEeecccceecchhhhhcccCCCceEEecCcCCc-
Confidence 111 146999999999 77776555542 22 22333332111 0000 0 1111112776
Q ss_pred CCHHHHHHHHHHHHHHHHHc------CCccEeEEEEEEecCCCEEEEEEeccCCCccchh
Q 013241 226 LTPELRKAMGDAAVAAAASI------GYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVT 279 (447)
Q Consensus 226 l~~~~~~~l~~~a~~i~~al------g~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~ 279 (447)
+++++.+++.+++.++++++ ++.|++++||+++++|++|++|+|||++|+..+.
T Consensus 263 l~~~~~~~a~~~a~~v~~al~~~~~~~~~G~~~vE~fvt~dg~i~V~EIapR~gGg~~~~ 322 (361)
T 2r7k_A 263 IRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNENLELVVFEMSARVDGGTNSF 322 (361)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECTTSCEEEEEEESSBCGGGGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhccCCccceEEEEEEEcCCCCEEEEEEcCCCCCCcccc
Confidence 88999999999999999999 8999999999999888999999999999975443
No 58
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=99.73 E-value=9.8e-18 Score=159.22 Aligned_cols=171 Identities=19% Similarity=0.243 Sum_probs=130.4
Q ss_pred HHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCC-----CCCcCeEE-ECCHHHHHHHH
Q 013241 87 IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAG-----GGGRGMRL-AKEPDEFVKLL 160 (447)
Q Consensus 87 ~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g-----~Gg~Gv~~-v~~~~el~~~~ 160 (447)
.+.++++|||++......+. +++.++++++|||+|+||..+ ++|.|+.+ ++|.+|+.+++
T Consensus 26 k~ll~~~GIp~p~~~~~~~~--------------~ea~~~a~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a~ 91 (238)
T 1wr2_A 26 KQVLKAYGLPVPEEKLAKTL--------------DEALEYAKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKW 91 (238)
T ss_dssp HHHHHTTTCCCCCCEEESSH--------------HHHHHHHHHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHH
T ss_pred HHHHHHcCcCCCCeEEeCCH--------------HHHHHHHHHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHHHHH
Confidence 45677889999988888777 888888899999999999998 77889998 79999999999
Q ss_pred HHHHHHHHHhcC---CCcEEEeeccCCCceEEEEEEEeC-CCcEEEEeeeeeccccccceeeEecCCCCCCHHHHHHHHH
Q 013241 161 QQAKSEAAAAFG---NDGVYLEKYVQNPRHIEFQVLADK-YGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGD 236 (447)
Q Consensus 161 ~~~~~~~~~~~~---~~~~lvEefI~G~~ei~v~vl~d~-~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~~~~~~l~~ 236 (447)
+.+.......++ ...++||+|+++++|+.+.++.|. .|.++.++.....+........... | ++++..++|.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~vlVEe~i~~g~E~~v~v~~d~~~g~v~~~~~Gg~~iE~~~d~~~~~~--P-l~~~~~~~~~~ 168 (238)
T 1wr2_A 92 EEIHENAKKYRPDAEILGVLVAPMLKPGREVIIGVTEDPQFGHAIMFGLGGIFVEILKDVTFRLV--P-ITEKDARKMIQ 168 (238)
T ss_dssp HHHHHHHHHHCTTCCCCEEEEEECCCCCEEEEEEEEEETTTEEEEEEEECSTTHHHHCCCEEEES--S-CCHHHHHHHHH
T ss_pred HHHHHhhhhhCCCCccceEEEEECCCCCeEEEEEEEeCCCCCcEEEEecCCceeeeecceeeecC--C-CCHHHHHHHHH
Confidence 998876654443 368999999996699999999998 6777777642222211111222223 3 89999999999
Q ss_pred HHHHHHHHcCCccEeEEEE-------------EEecCCCEEEEEEeccCCC
Q 013241 237 AAVAAAASIGYIGVGTVEF-------------LLDERGSFYFMEMNTRIQV 274 (447)
Q Consensus 237 ~a~~i~~alg~~G~~~vEf-------------~~d~~G~~~~iEiNpR~~g 274 (447)
.+.++...+||+|...+|+ +.+.+++++++||||++-.
T Consensus 169 ~~~~~~~~~g~~G~~~~d~~~l~~~l~~l~~~~~~~~~~~~~lEINPl~~~ 219 (238)
T 1wr2_A 169 EIKAYPILAGARGEEPADIDAIVDMLLKVSKLVDDLKDYIKEMDLNPVFVY 219 (238)
T ss_dssp TSTTHHHHHCC--CCCBCHHHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEC
T ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHcCCCCeEEEeccCeEEe
Confidence 9999999999999766663 2233333999999999853
No 59
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=99.72 E-value=5.9e-18 Score=167.16 Aligned_cols=188 Identities=13% Similarity=0.194 Sum_probs=116.3
Q ss_pred EEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChh-hHHHHHhcccc--------------CH-----------------
Q 013241 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKD-ALHVKLADESV--------------CI----------------- 120 (447)
Q Consensus 73 kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~-~~~~~lad~~v--------------~i----------------- 120 (447)
+|.+++.| .++.++++++++|+.++++....+.. ......+|+.+ .+
T Consensus 4 ~I~~lGsg-l~~~~~~aAk~lG~~viv~d~~~~~p~~~a~~~ad~~~~~~~~~dl~~~~dvitpe~e~v~~~~l~~le~~ 82 (320)
T 2pbz_A 4 IVSTIASH-SSLQILLGAKKEGFKTRLYVSPKRRPFYSSLPIVDDLVVAEEMTSILNDDGIVVPHGSFVAYLGIEAIEKA 82 (320)
T ss_dssp CEEEESST-THHHHHHHHHHTTCCEEEEECTTTHHHHHTCTTCSEEEECSCSCCTTCCSSBCCCBTTHHHHSCHHHHHTC
T ss_pred EEEEEcCH-hHHHHHHHHHHCCCEEEEEECCCCCccchhhhcCCeEEECCcHHHHHhcCCEEEecccchhHHHHHHHHHc
Confidence 38899999 99999999999999999877553321 00111222211 10
Q ss_pred --------------------HHHHHH----------hh--hhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHH
Q 013241 121 --------------------EEAVKL----------AD--ELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAA 168 (447)
Q Consensus 121 --------------------~e~~~~----------~~--~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~ 168 (447)
.+..+. .+ +++||+||||..|+||+|+++++| +|+..+++.+
T Consensus 83 ~~p~~p~~~~l~~~~dr~~~~~~l~~~Gip~P~~~~~ee~~i~~PviVKp~~g~ggkG~~~v~~-eel~~~~~~~----- 156 (320)
T 2pbz_A 83 KARFFGNRRFLKWETTFELQDKALEGAGIPRVEVVEPEDAKPDELYFVRIEGPRGGSGHFIVEG-SELEERLSTL----- 156 (320)
T ss_dssp CSCCBSCSSGGGGGSCHHHHHHHHHHHTCCBCCBCCSCCCCSSCCEEEECC------------C-EECSCCCC-------
T ss_pred CCCcCCCHHHHHHHHhHHHHHHHHHHCCcCCCCeeCHhHcCcCCcEEEEECCCCCCCCEEEECh-HHHHHHHHhc-----
Confidence 111111 11 248999999999999999999999 9997765433
Q ss_pred HhcCCCcEEEeeccCCCceEEEEEEEe-CCCcEEEEeeeeeccccccc----------eeeEecCCCCCCHHHHHHHHHH
Q 013241 169 AAFGNDGVYLEKYVQNPRHIEFQVLAD-KYGNVVHFGERDCSIQRRNQ----------KLLEEAPSPALTPELRKAMGDA 237 (447)
Q Consensus 169 ~~~~~~~~lvEefI~G~~ei~v~vl~d-~~g~vv~l~~r~~s~~~~~~----------k~~~~~P~~~l~~~~~~~l~~~ 237 (447)
+ .+++|||||+| .++...++.+ -.|++..++.+..-...... -+....|+. +++++.+++.+.
T Consensus 157 ---~-~~~IiEEfI~g-~~~~~~~f~~~~~g~~e~~~~~~r~e~~~g~~~~p~~~~~~~~~G~~P~~-~~~~~~~~a~~~ 230 (320)
T 2pbz_A 157 ---E-EPYRVERFIPG-VYLYVHFFYSPILERLELLGVDERVLIADGNARWPVKPLPYTIVGNRAIA-LRESLLPQLYDY 230 (320)
T ss_dssp ------CCEEEECCCS-CEEEEEEEEETTTTEEEEEEEEEEEETTCSSSSSCCSCCCCCEEEEEECE-ECGGGHHHHHHH
T ss_pred ---C-CCEEEEeeece-EecceeEEeccccCceeEEEecceEEEECCeeecccCCCceeeecCCCCc-cCHHHHHHHHHH
Confidence 1 47999999999 5556666655 34555544433211001111 111112665 788888999999
Q ss_pred HHHHHHHc------CCccEeEEEEEEecCCCEEEEEEeccCCCc
Q 013241 238 AVAAAASI------GYIGVGTVEFLLDERGSFYFMEMNTRIQVE 275 (447)
Q Consensus 238 a~~i~~al------g~~G~~~vEf~~d~~G~~~~iEiNpR~~g~ 275 (447)
+.++++++ |+.|++++| +++||++|++|||||++|+
T Consensus 231 a~~i~~~L~~l~~~g~~G~~~vE--~~~dg~~~v~EIapR~~GG 272 (320)
T 2pbz_A 231 GLAFVRTMRELEPPGVIGPFALH--FAYDGSFKAIGIASRIDGG 272 (320)
T ss_dssp HHHHHHHHHHHSTTCCCSEEEEE--EECSSSCEEEEEESSBCSG
T ss_pred HHHHHHHHHhhccCCceeeEEEE--EcCCCcEEEEEecCCCCCC
Confidence 99999999 999999999 5777889999999999886
No 60
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.68 E-value=3.3e-16 Score=170.43 Aligned_cols=186 Identities=20% Similarity=0.201 Sum_probs=140.5
Q ss_pred HHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHh-hhhCCcEEEEeCCCCCCcCeEEE----CCHHHHHHHHH
Q 013241 87 IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLA-DELGFPVMIKATAGGGGRGMRLA----KEPDEFVKLLQ 161 (447)
Q Consensus 87 ~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~-~~ig~PvVvKP~~g~Gg~Gv~~v----~~~~el~~~~~ 161 (447)
.+.+++.|||++......+. +++.+.+ +.+|||+||||..|++|+||+++ ++.+|+.++++
T Consensus 494 k~lL~~~GIPvP~~~~~~~~--------------~ea~~~~~~~~g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al~ 559 (757)
T 3ln7_A 494 KKVLQKAGFNVPQSVEFTSL--------------EKAVASYALFENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALE 559 (757)
T ss_dssp HHHHHHHTCCCCCEEEESCH--------------HHHHHGGGGSSSSCEEEEESSCSTTTTCEECSSCCCCHHHHHHHHH
T ss_pred HHHHHHCCcCCCCEEEECCH--------------HHHHHHHHHhcCCCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHHH
Confidence 45778899999999888887 7777766 78999999999999999999999 89999999998
Q ss_pred HHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeecc-c------------------cc---------
Q 013241 162 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSI-Q------------------RR--------- 213 (447)
Q Consensus 162 ~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~-~------------------~~--------- 213 (447)
.+... +..++|||||+| +|++|.+++ |+++....|.... . ++
T Consensus 560 ~a~~~------~~~vlVEefI~G-~Ei~v~Vlg---gkvvaai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~ 629 (757)
T 3ln7_A 560 IAFRE------DKEVMVEDYLVG-TEYRFFVLG---DETLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLK 629 (757)
T ss_dssp HHHHH------CSSEEEEECCCS-EEEEEEEET---TEEEEEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEE
T ss_pred HHHhc------CCcEEEEEcCCC-cEEEEEEEC---CEEEEEEEEecccccCCCcccHHHHHHhhcccccccccccCccc
Confidence 77643 478999999999 999999994 4666654443210 0 00
Q ss_pred -------------------------ccee--------eEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEec-
Q 013241 214 -------------------------NQKL--------LEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE- 259 (447)
Q Consensus 214 -------------------------~~k~--------~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~- 259 (447)
.+.+ ...+-+..+++++.+++.+.|.++++++|+. +++||++.++
T Consensus 630 ~I~ld~~~~~~L~~~g~~~d~Vp~~Ge~v~L~~~~Nls~GG~~~dvtd~i~p~~~~~a~~aa~~lGl~-~~GvDli~~di 708 (757)
T 3ln7_A 630 KIALGEIEQLQLKEQGLTIDSIPAKDQLVQLRANSNISTGGDSIDMTDEMHESYKQLAVGITKAMGAA-VCGVDLIIPDL 708 (757)
T ss_dssp CCCCCHHHHHHHHHHTCCSSSCCCSSCEEECCSSCCGGGTCCEEECTTTSCHHHHHHHHHHHHHHTCS-EEEEEEEESCS
T ss_pred cccccHHHHHHHHHcCCCccccCCCCCEEEeecccccccCccceeccccCCHHHHHHHHHHHHHhCCC-EEEEEEEecCc
Confidence 0000 0000111245567788899999999999996 9999999872
Q ss_pred -------CCCEEEEEEeccCCCc-cchhhhhcCCCHHHHHHHHHcC
Q 013241 260 -------RGSFYFMEMNTRIQVE-HPVTEMISSVDLIEEQIHVAMG 297 (447)
Q Consensus 260 -------~G~~~~iEiNpR~~g~-~~v~e~~~GiDl~~~~i~~a~G 297 (447)
.+.+.+||+|++++-. |..-...+|.|+.+.+++....
T Consensus 709 ~~p~~~~~~~~~iiEvN~~P~~~~h~~p~~g~~~~v~~~ii~~lfp 754 (757)
T 3ln7_A 709 KQPATPNLTSWGVIEANFNPMMMMHIFPYAGKSRRLTQNVIKMLFP 754 (757)
T ss_dssp SSCCCSSTTTCEEEEEESSCCHHHHHSCSSSCCCCCHHHHHHHHCT
T ss_pred cccccccCCCeEEEEEcCCcchhhhhccccCCCCchHHHHHHHhcC
Confidence 2458999999999764 3333346899999999988764
No 61
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.65 E-value=5.6e-16 Score=168.96 Aligned_cols=185 Identities=17% Similarity=0.239 Sum_probs=137.5
Q ss_pred HHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHh-hhhCCcEEEEeCCCCCCcCeEEEC---CHHHHHHHHHH
Q 013241 87 IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLA-DELGFPVMIKATAGGGGRGMRLAK---EPDEFVKLLQQ 162 (447)
Q Consensus 87 ~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~-~~ig~PvVvKP~~g~Gg~Gv~~v~---~~~el~~~~~~ 162 (447)
.+.+++.|||++......+. +++.+++ +.+|||+||||..|++|+||++++ +.+|+.++++.
T Consensus 489 k~lL~~~GIPvP~~~~~~~~--------------~ea~~~~~~~~g~PvVVKP~~G~~G~GV~iv~~~~s~eel~~a~~~ 554 (750)
T 3ln6_A 489 KKILDEKHFPTPFGDEFTDR--------------KEALNYFSQIQDKPIVVKPKSTNFGLGISIFKTSANLASYEKAIDI 554 (750)
T ss_dssp HHHHHHTTCCCCCCCCEETT--------------TTHHHHHHHSSSSCEEEEETTCCSSSSCEEESSCCCHHHHHHHHHH
T ss_pred HHHHHHCCcCCCCEEEECCH--------------HHHHHHHHHhcCCcEEEEeCCCCCCCCEEEEeCCCCHHHHHHHHHH
Confidence 45677889998887777666 6676666 678999999999999999999999 99999999987
Q ss_pred HHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeecc------------------c-cc---ccee---
Q 013241 163 AKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSI------------------Q-RR---NQKL--- 217 (447)
Q Consensus 163 ~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~------------------~-~~---~~k~--- 217 (447)
+... +..++|||||+| +|++|.+++ |+++....|.... . ++ +.+.
T Consensus 555 ~~~~------~~~vlVEefI~G-~E~~v~Vvg---g~vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~~l~~ 624 (750)
T 3ln6_A 555 AFTE------DSAILVEEYIEG-TEYRFFVLE---GDCIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEV 624 (750)
T ss_dssp HHHH------CSEEEEEECCCS-EEEEEEEET---TEEEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCCSEEC
T ss_pred HHhh------CCcEEEEeccCC-CEEEEEEEC---CEEEEEEEEecceEecCCccCHHHHHHhhccCccccccccCcccc
Confidence 7643 478999999998 999999984 3565544442211 0 00 0000
Q ss_pred -----------------eEecC-------------------CCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEec--
Q 013241 218 -----------------LEEAP-------------------SPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE-- 259 (447)
Q Consensus 218 -----------------~~~~P-------------------~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~-- 259 (447)
.+..| +..+++++.+++.+.|.++++++|+. +++||++.++
T Consensus 625 i~~d~~~~~~l~~~g~~~~~V~~~Ge~v~L~~~~Nls~Gg~~~d~td~i~p~~~~~a~~aa~~igl~-~~GvDli~~di~ 703 (750)
T 3ln6_A 625 IELGEVEQLMLEQQGYTVNSIPPEGTKIELRRNSNISTGGDSIDVTNTMDPTYKQLAAEMAEAMGAW-VCGVDLIIPNAT 703 (750)
T ss_dssp CCCCHHHHHHHHHTTCCSSCCCCTTCEEESCSSCCTTTTCEEEECTTTSCHHHHHHHHHHHHHHTCS-SCEEEEEESCSS
T ss_pred ccccHHHHHHHHHcCCCccccCCCCCEEEEeecccccCCCceeeccccCCHHHHHHHHHHHHHhCCC-eEEEEEEecCcc
Confidence 00000 01135567788899999999999996 9999999974
Q ss_pred ------CCCEEEEEEeccCCCc-cchhhhhcCCCHHHHHHHHHc
Q 013241 260 ------RGSFYFMEMNTRIQVE-HPVTEMISSVDLIEEQIHVAM 296 (447)
Q Consensus 260 ------~G~~~~iEiNpR~~g~-~~v~e~~~GiDl~~~~i~~a~ 296 (447)
.|.+++||+|++++-. |..-...++.|+.+.+++...
T Consensus 704 ~~~~~~~~~~~iiEvN~~pg~~~h~~p~~g~~~~v~~~ii~~lf 747 (750)
T 3ln6_A 704 QAYSKDKKNATCIELNFNPLMYMHTYCQEGPGQSITPRILAKLF 747 (750)
T ss_dssp SCCCTTTTCCEEEEEESSCCCHHHHSCSBSCCCCCHHHHHHHHC
T ss_pred ccccccCCCeEEEEEcCCcchhhhcCcccCCCCcHHHHHHHHhC
Confidence 4568999999999874 433345789999999998764
No 62
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.65 E-value=1e-15 Score=150.15 Aligned_cols=194 Identities=12% Similarity=0.138 Sum_probs=134.8
Q ss_pred HHHHHHHHcCCCee----EEEeccCh----hhHHHHHhcccc---CH------HHHHHHhhhhCCcEEEEeCCCCCCcCe
Q 013241 85 RVIRTAHEMGIPCV----AVYSTIDK----DALHVKLADESV---CI------EEAVKLADELGFPVMIKATAGGGGRGM 147 (447)
Q Consensus 85 ri~r~~~~lGi~~v----av~~~~dk----~~~~~~lad~~v---~i------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv 147 (447)
.+.+.++.+|++++ ++..+.|| ..+...++..++ +. ++..+..+..|||+|+||..|+.|+||
T Consensus 89 ~vl~~le~~GvpviN~~~sI~~~~DK~~~~~~~~~~l~~~gi~~~P~~~~~~~~~~~~~~~~~g~PvVvK~~~Gs~G~GV 168 (309)
T 1i7n_A 89 HLVIGMQYAGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHREMLTLPTFPVVVKIGHAHSGMGK 168 (309)
T ss_dssp HHHHHHHHTTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESSGGGGSSCCCSSEEEEESSCSTTTTE
T ss_pred HHHHHHHHCCccccCCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCCEEeeCChhhhhhccCCCEEEEeCCCCceeCe
Confidence 45677888999887 35667888 444445555555 53 333345567899999999999999999
Q ss_pred EEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeee-ccccccceeeEecCCCCC
Q 013241 148 RLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC-SIQRRNQKLLEEAPSPAL 226 (447)
Q Consensus 148 ~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~-s~~~~~~k~~~~~P~~~l 226 (447)
.++++.++++..++..... +..+++||||+.++++.+.++++ +++.+..+.. .-.+.+.......+.+ +
T Consensus 169 ~lv~~~~~~~~~~~~~~~~------~~~~~vQefI~~g~DiRv~VvGg---~v~a~~Rr~~~g~wrtN~~~~~~e~~~-l 238 (309)
T 1i7n_A 169 VKVENHYDFQDIASVVALT------QTYATAEPFIDAKYDIRVQKIGN---NYKAYMRTSISGNWKTNTGSAMLEQIA-M 238 (309)
T ss_dssp EEECSHHHHHHHHHHHHHH------TCCEEEEECCCEEEEEEEEEETT---EEEEEEEESSCTTTSCSCCCSSEEEEC-C
T ss_pred EEECCHHHHHHHHHHHhcc------CCeEEEEeecCCCceEEEEEECC---EEEEEEEEcCCCCCeecCCcceeeecC-C
Confidence 9999999998887654433 37789999999778999999944 5554333210 1111221100001222 4
Q ss_pred CHHHHHHHHHHHHHHHHHc-CCccEeEEEEEEecCCCEEEEEEec--cCCCccchhhhhcCCCHHHHHHHHH
Q 013241 227 TPELRKAMGDAAVAAAASI-GYIGVGTVEFLLDERGSFYFMEMNT--RIQVEHPVTEMISSVDLIEEQIHVA 295 (447)
Q Consensus 227 ~~~~~~~l~~~a~~i~~al-g~~G~~~vEf~~d~~G~~~~iEiNp--R~~g~~~v~e~~~GiDl~~~~i~~a 295 (447)
+++ ..++|.++++++ |. ++++||++.+++|.+|++|+|. -++-+ -++..++.++.+.+++..
T Consensus 239 ~~e----~~~la~~A~~a~gGl-di~GVDll~~~~g~~~V~EVN~~~~P~~~--~~~~~~~~~ia~~ii~~~ 303 (309)
T 1i7n_A 239 SDR----YKLWVDACSEMFGGL-DICAVKAVHGKDGKDYIFEVMDCSMPLIG--EHQVEDRQLITDLVISKM 303 (309)
T ss_dssp CHH----HHHHHHHHTTGGGCC-SEEEEEEEEETTSCEEEEEEECTTCCCCS--SCHHHHHHHHHHHHHHHH
T ss_pred CHH----HHHHHHHHHHHhCCC-CEEEEEEEEcCCCCEEEEEECCCCCCCcc--chhhhhHHHHHHHHHHHH
Confidence 544 568888999999 66 6999999999989899999999 77653 234456778888777643
No 63
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=151.81 Aligned_cols=196 Identities=13% Similarity=0.119 Sum_probs=139.5
Q ss_pred HHHHHHHHcCCCee----EEEeccCh----hhHHHHHhcccc---CH------HHHHHHhhhhCCcEEEEeCCCCCCcCe
Q 013241 85 RVIRTAHEMGIPCV----AVYSTIDK----DALHVKLADESV---CI------EEAVKLADELGFPVMIKATAGGGGRGM 147 (447)
Q Consensus 85 ri~r~~~~lGi~~v----av~~~~dk----~~~~~~lad~~v---~i------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv 147 (447)
.+.+.++.+|++++ ++..+.|| ..+...+...++ +. ++..+..+.+|||+|+||..|+.|+||
T Consensus 106 ~vl~~le~~GvpviN~~~sI~~~~DK~~v~~~~l~~l~~~gi~~~P~~~~t~~~~~~~~~~~~g~PvVvK~~~Gs~G~GV 185 (344)
T 2p0a_A 106 SLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHKPMVTAPHFPVVVKLGHAHAGMGK 185 (344)
T ss_dssp HHHHHHHHTTCCEESCHHHHHHTTCHHHHHHHHHHHHHHHCTTTSCBCCCEEESSSTTCCCCSSSSEEEEESSCCTTTTE
T ss_pred HHHHHHHHCCceecCCHHHHHhhCCchHHHHHHHHHHHHCCCCCCCCCCEEecCchhhhhhccCCCEEEEeCCCCceeCe
Confidence 55778899999987 45678899 445555566555 53 333344567899999999999999999
Q ss_pred EEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeec-cccccceeeEecCCCCC
Q 013241 148 RLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS-IQRRNQKLLEEAPSPAL 226 (447)
Q Consensus 148 ~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s-~~~~~~k~~~~~P~~~l 226 (447)
.++++.++++..++..... +..+++||||+..+++.+.++++ +++.+..+..+ -.+.+.......+.+ +
T Consensus 186 ~lve~~~~~~~~~~~~~~~------~~~~~vQefI~~g~DiRv~VVGg---~vva~~R~~~~g~wrtN~~~~~~e~~~-l 255 (344)
T 2p0a_A 186 IKVENQLDFQDITSVVAMA------KTYATTEAFIDSKYDIRIQKIGS---NYKAYMRTSISGNWKANTGSAMLEQVA-M 255 (344)
T ss_dssp EEECSHHHHHHHHHHHHHH------TCCEEEEECCCEEEEEEEEEETT---EEEEEEEEESSSCSSTTSSSEEEEEEC-C
T ss_pred EEECCHHHHHHHHHHHhcc------CCeEEEEeccCCCccEEEEEECC---EEEEEEEecCCCCCeecCCceEEEeeC-C
Confidence 9999999998877654322 36788999999778999999944 55543222111 112221111111232 4
Q ss_pred CHHHHHHHHHHHHHHHHHc-CCccEeEEEEEEecCCCEEEEEEec--cCCCccchhhhhcCCCHHHHHHHHHcC
Q 013241 227 TPELRKAMGDAAVAAAASI-GYIGVGTVEFLLDERGSFYFMEMNT--RIQVEHPVTEMISSVDLIEEQIHVAMG 297 (447)
Q Consensus 227 ~~~~~~~l~~~a~~i~~al-g~~G~~~vEf~~d~~G~~~~iEiNp--R~~g~~~v~e~~~GiDl~~~~i~~a~G 297 (447)
+++ +.+++.++++++ |+ +++.||++.+++|.+|++|+|. .++-+ -++..++.|+.+.+++...-
T Consensus 256 ~~e----~~~la~~Aa~a~gGl-di~GVDll~~~~G~~~VlEVN~~~~P~~~--~~~~~~~~~Ia~~ii~~i~~ 322 (344)
T 2p0a_A 256 TER----YRLWVDSCSEMFGGL-DICAVKAVHSKDGRDYIIEVMDSSMPLIG--EHVEEDRQLMADLVVSKMSQ 322 (344)
T ss_dssp CHH----HHHHHHHHTTGGGCC-SEEEEEEEEETTSCEEEEEEECTTCCCCG--GGHHHHHHHHHHHHHHHHHT
T ss_pred CHH----HHHHHHHHHHHhCCC-CEEEEEEEEcCCCCEEEEEEcCCCCCccc--chhhhHHHHHHHHHHHHHHH
Confidence 544 568888899999 66 6999999999989899999999 66543 44567788999999987643
No 64
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.64 E-value=1.3e-15 Score=154.00 Aligned_cols=194 Identities=13% Similarity=0.131 Sum_probs=138.0
Q ss_pred HHHHHHHHcCCCee----EEEeccCh----hhHHHHHhcccc---CH------HHHHHHhhhhCCcEEEEeCCCCCCcCe
Q 013241 85 RVIRTAHEMGIPCV----AVYSTIDK----DALHVKLADESV---CI------EEAVKLADELGFPVMIKATAGGGGRGM 147 (447)
Q Consensus 85 ri~r~~~~lGi~~v----av~~~~dk----~~~~~~lad~~v---~i------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv 147 (447)
.+.+.++.+|++++ ++..+.|| ..+...+...++ +. ++..+.++..|||+|+||..|..|+||
T Consensus 201 ~vlr~lE~~GvpviNs~~sI~~~~DK~~vf~~~l~ll~~~gi~~iP~t~~t~~~~~~~~i~~~g~PvVvKp~~GS~G~GV 280 (422)
T 1pk8_A 201 SLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGK 280 (422)
T ss_dssp HHHHHHHHTTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESSGGGCCCCSSSSEEEEESSCCTTTTE
T ss_pred HHHHHHHHCCccccCCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCceEecCchhhhhhccCCCEEEEeCCCCceeCe
Confidence 56788999999987 45678899 344444555555 52 333335567899999999999999999
Q ss_pred EEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeee-eccccccceeeEecCCCCC
Q 013241 148 RLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD-CSIQRRNQKLLEEAPSPAL 226 (447)
Q Consensus 148 ~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~-~s~~~~~~k~~~~~P~~~l 226 (447)
.++++.++++..++..... +..+++||||+..+++.+.++++ +++.+..+. ..-.+.+.......+.+ +
T Consensus 281 ~lve~~~~l~~ii~~~~~~------~~~~~vQEfI~~g~DIRv~VVGg---~vva~~Rr~~~g~WrtNvg~g~~e~i~-l 350 (422)
T 1pk8_A 281 VKVDNQHDFQDIASVVALT------KTYATAEPFIDAKYDVRVQKIGQ---NYKAYMRTSVSGNWKTNTGSAMLEQIA-M 350 (422)
T ss_dssp EEECSHHHHHHHHHHHHHH------TSCEEEEECCCEEEEEEEEEETT---EEEEEEEEESSSCSSTTSSCEEEEEEC-C
T ss_pred EEeCCHHHHHHHHHHHhcc------CceEEEEeecCCCceEEEEEECC---EEEEEEEEcCCCCceeccCceeeeeeC-C
Confidence 9999999999888654433 36789999999778999999944 555433321 11112221111111222 4
Q ss_pred CHHHHHHHHHHHHHHHHHc-CCccEeEEEEEEecCCCEEEEEEec--cCCCccchhhhhcCCCHHHHHHHHH
Q 013241 227 TPELRKAMGDAAVAAAASI-GYIGVGTVEFLLDERGSFYFMEMNT--RIQVEHPVTEMISSVDLIEEQIHVA 295 (447)
Q Consensus 227 ~~~~~~~l~~~a~~i~~al-g~~G~~~vEf~~d~~G~~~~iEiNp--R~~g~~~v~e~~~GiDl~~~~i~~a 295 (447)
+++ +.+++.++++++ |+ +++.||++.+++|.+|++|+|. .++-+ -++..++.|+.+.+++..
T Consensus 351 t~e----~~elA~kAaka~gGl-diaGVDlL~s~dG~~~VlEVN~s~~P~~~--g~~~~~~~~IA~~ii~~i 415 (422)
T 1pk8_A 351 SDR----YKLWVDTCSEIFGGL-DICAVEALHGKDGRDHIIEVVGSSMPLIG--DHQDEDKQLIVELVVNKM 415 (422)
T ss_dssp CHH----HHHHHHHHTTGGGCC-SEEEEEEEEETTSCEEEEEEECTTCCCCT--TCHHHHHHHHHHHHHHHH
T ss_pred CHH----HHHHHHHHHHHhCCC-CEEEEEEEEcCCCCEEEEEECCCCCCCcc--chhhhHHHHHHHHHHHHH
Confidence 544 668899999999 66 6999999999989899999999 66543 344567888888888765
No 65
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.64 E-value=1.7e-15 Score=148.29 Aligned_cols=194 Identities=14% Similarity=0.073 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHcCCCeeE----EEeccChhhHHHHHhccccCH-------HHHHHHhhhhCCcEEEEeCCCCCCcCeEEE
Q 013241 82 IAVRVIRTAHEMGIPCVA----VYSTIDKDALHVKLADESVCI-------EEAVKLADELGFPVMIKATAGGGGRGMRLA 150 (447)
Q Consensus 82 ia~ri~r~~~~lGi~~va----v~~~~dk~~~~~~lad~~v~i-------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v 150 (447)
....+.+.++.+|+++.. +..+.||..++..+. .++- +++.+++++++ |+|+||..|+||+|++++
T Consensus 97 ~~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~--~~P~t~~~~~~~~~~~~~~~~~-p~vvKP~~g~~g~Gv~~v 173 (316)
T 1gsa_A 97 YATYILERAEEKGTLIVNKPQSLRDCNEKLFTAWFSD--LTPETLVTRNKAQLKAFWEKHS-DIILKPLDGMGGASIFRV 173 (316)
T ss_dssp HHHHHHHHHHHTTCEEESCHHHHHHCCTTGGGGGGTT--TSCCEEEESCHHHHHHHHHHHS-SEEEECSSCCTTTTCEEE
T ss_pred HHHHHHHHHHHcCCeEecCHHHHHhhhhHHHHHhhhh--cCCCeEEeCCHHHHHHHHHHcC-CEEEEECCCCCcccEEEe
Confidence 345778888889987542 223578888887776 2221 67778888888 999999999999999999
Q ss_pred C-CHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCC--CceEEEEEEEeCCCcEEE-Eeeeeec---cccccceeeEecCC
Q 013241 151 K-EPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN--PRHIEFQVLADKYGNVVH-FGERDCS---IQRRNQKLLEEAPS 223 (447)
Q Consensus 151 ~-~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G--~~ei~v~vl~d~~g~vv~-l~~r~~s---~~~~~~k~~~~~P~ 223 (447)
+ +.+++..+++.... .+..++++||||+| ..++++.++ +|+++. ...|... +..+........|.
T Consensus 174 ~~~~~~l~~~~~~~~~-----~~~~~~lvqe~i~~~~~~~~~v~~~---~g~~~~~~~~r~~~~~~~~~~~~~gg~~~~~ 245 (316)
T 1gsa_A 174 KEGDPNLGVIAETLTE-----HGTRYCMAQNYLPAIKDGDKRVLVV---DGEPVPYCLARIPQGGETRGNLAAGGRGEPR 245 (316)
T ss_dssp CTTCTTHHHHHHHHTT-----TTTSCEEEEECCGGGGGCEEEEEEE---TTEECSEEEEEECCSSCSCCCGGGTCEEEEE
T ss_pred cCChHHHHHHHHHHHh-----cCCceEEEecccCCCCCCCEEEEEE---CCEEeeeEEEEeCCCCCceeEEccCCccccC
Confidence 8 88898877664321 22478999999998 466666655 345443 2222210 00100001111233
Q ss_pred CCCCHHHHHHHHHHHHHHH---HHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcC
Q 013241 224 PALTPELRKAMGDAAVAAA---ASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMG 297 (447)
Q Consensus 224 ~~l~~~~~~~l~~~a~~i~---~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G 297 (447)
. ++++ +.+.+.+++ +++|+ +.+.+||+ |. ||+|+|+|.+++...++..+|+|+.+.+++...+
T Consensus 246 ~-~~~~----~~~~a~~~~~~l~~~g~-~~~~vD~~----g~-~~iEvN~r~~~~~~~~~~~~g~~~~~~~~~~~~~ 311 (316)
T 1gsa_A 246 P-LTES----DWKIARQIGPTLKEKGL-IFVGLDII----GD-RLTEINVTSPTCIREIEAEFPVSITGMLMDAIEA 311 (316)
T ss_dssp E-CCHH----HHHHHHHHHHHHHHTTC-CEEEEEEE----TT-EEEEEECSSCCCHHHHHHHSSCCHHHHHHHHHHH
T ss_pred C-CCHH----HHHHHHHHHHHHHhCCC-cEEEEEec----CC-EEEEEcCCCCcchHHHHHhhCcCHHHHHHHHHHH
Confidence 3 5544 334445444 45687 68889998 54 8999999975455666788999999999987754
No 66
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=99.63 E-value=1.8e-15 Score=149.44 Aligned_cols=154 Identities=14% Similarity=0.253 Sum_probs=104.8
Q ss_pred ccChhhHHHHHhccccCH---------HHHHHHhhhh--CCcEEEEeCCCCCC---cCeEEECCHHHHHHHHHHHHHHHH
Q 013241 103 TIDKDALHVKLADESVCI---------EEAVKLADEL--GFPVMIKATAGGGG---RGMRLAKEPDEFVKLLQQAKSEAA 168 (447)
Q Consensus 103 ~~dk~~~~~~lad~~v~i---------~e~~~~~~~i--g~PvVvKP~~g~Gg---~Gv~~v~~~~el~~~~~~~~~~~~ 168 (447)
+.||..++..+++.++++ +++.+++++. +||+|+||..|.|| +|++++++.+++..
T Consensus 96 ~~dK~~~~~~l~~~gi~~P~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~---------- 165 (324)
T 1z2n_X 96 MSSREEINALLIKNNIPIPNSFSVKSKEEVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDD---------- 165 (324)
T ss_dssp HTBHHHHHHHHHHTTCCCSCEEEESSHHHHHHHHHTTCSCSSEEEEESBCSSSSGGGEEEEECSGGGGTT----------
T ss_pred HhCHHHHHHHHHHCCCCCCCEEEeCCHHHHHHHHHHcCCCCCEEEeeCCCCCCccceeeEEEeCHHHHhh----------
Confidence 456666666666666554 6677777664 59999999999999 99999999988652
Q ss_pred HhcCCCcEEEeeccCC-CceEEEEEEEeCCCcEEEEeeeeec-cc----------c------------------------
Q 013241 169 AAFGNDGVYLEKYVQN-PRHIEFQVLADKYGNVVHFGERDCS-IQ----------R------------------------ 212 (447)
Q Consensus 169 ~~~~~~~~lvEefI~G-~~ei~v~vl~d~~g~vv~l~~r~~s-~~----------~------------------------ 212 (447)
+ +.++++||||++ ++++++.+++ |+++....+... +. .
T Consensus 166 --~-~~~~lvqe~i~~~g~~~~v~v~g---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~k~~~~~~~~ 239 (324)
T 1z2n_X 166 --I-HFPCLCQHYINHNNKIVKVFCIG---NTLKWQTRTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSA 239 (324)
T ss_dssp --C-CSSEEEEECCCCTTCEEEEEEET---TEEEEEEECCCCCCCCSSCCEEEEETTBGGGGGGSCTTSSCHHHHHHHHT
T ss_pred --c-CCCEEEEEccCCCCcEEEEEEEC---CEEEEEEecCcccccCCCccceeeccccchhhhccccccccccccccccc
Confidence 1 478999999986 4788887773 344443221100 00 0
Q ss_pred ccce-eeEecCCCCCCHHHH-HHHHHHHHHHHHHcCCccEeEEEEEEe-cCCCEEEEEEeccCCCc
Q 013241 213 RNQK-LLEEAPSPALTPELR-KAMGDAAVAAAASIGYIGVGTVEFLLD-ERGSFYFMEMNTRIQVE 275 (447)
Q Consensus 213 ~~~k-~~~~~P~~~l~~~~~-~~l~~~a~~i~~alg~~G~~~vEf~~d-~~G~~~~iEiNpR~~g~ 275 (447)
.... -....+. ....+. +++.+.+.++++++|+. .+++||+++ ++|++||+|||+|++..
T Consensus 240 ~~~~~~~~~~~~--~~~~~~~~~i~~~a~~~~~~lg~~-~~~vD~~~~~~~g~~~vlEvN~~Pg~~ 302 (324)
T 1z2n_X 240 NRFGSKILEDPI--LLNLTSEAEMRDLAYKVRCALGVQ-LCGIDFIKENEQGNPLVVDVNVFPSYG 302 (324)
T ss_dssp TTTCCCBCSCTT--TTTSCCHHHHHHHHHHHHHHHTCS-EEEEEEECGGGCSSCEEEEEEESCCTT
T ss_pred cchhhccccCCc--cccCCCHHHHHHHHHHHHHHhCCc-EEeeEEEEEcCCCCEEEEEEcCCCCcC
Confidence 0000 0000111 122222 68899999999999996 889999998 56999999999999754
No 67
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.3e-14 Score=119.72 Aligned_cols=89 Identities=42% Similarity=0.727 Sum_probs=76.3
Q ss_pred HHcCCCeeEEE--eccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHH
Q 013241 91 HEMGIPCVAVY--STIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAA 168 (447)
Q Consensus 91 ~~lGi~~vav~--~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~ 168 (447)
+++|+|++..+ ...+. +++.+++++++||+|+||..|+||+|+++++|.+|+..+++.+.....
T Consensus 17 ~~~gip~p~~~~~~~~~~--------------~~~~~~~~~~~~P~vvKp~~~~~~~gv~~v~~~~el~~~~~~~~~~~~ 82 (108)
T 2cqy_A 17 KKAEVNTIPGFDGVVKDA--------------EEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAA 82 (108)
T ss_dssp CSSCCCCCSCCCSCBSSH--------------HHHHHHHHHHCSSEEEEETTSCCTTTCEEESSHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCcccccCCH--------------HHHHHHHHhcCCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHH
Confidence 36899998876 66676 788888889999999999999999999999999999999998876555
Q ss_pred HhcCCCcEEEeeccCCCceEEEEEE
Q 013241 169 AAFGNDGVYLEKYVQNPRHIEFQVL 193 (447)
Q Consensus 169 ~~~~~~~~lvEefI~G~~ei~v~vl 193 (447)
..+++..++||+||+|.+|++++++
T Consensus 83 ~~~~~~~~lvee~i~g~~E~~v~v~ 107 (108)
T 2cqy_A 83 SSFGDDRLLIEKFIDNPRHISGPSS 107 (108)
T ss_dssp HHTSSCCEEEEECCSSSSCCCSCCC
T ss_pred hhcCCCcEEEeeccCCCcEEEEEec
Confidence 5565678999999999669988765
No 68
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=99.39 E-value=3.3e-12 Score=127.60 Aligned_cols=184 Identities=9% Similarity=0.148 Sum_probs=118.9
Q ss_pred CCcEEEEecCc------------HHHHHHHHHHHH--cCCCe----eEEEeccChhhHHHHHhcc-------ccCH----
Q 013241 70 RQEKILVANRG------------EIAVRVIRTAHE--MGIPC----VAVYSTIDKDALHVKLADE-------SVCI---- 120 (447)
Q Consensus 70 ~~~kvLianrg------------eia~ri~r~~~~--lGi~~----vav~~~~dk~~~~~~lad~-------~v~i---- 120 (447)
.++-|+....+ ...++.++.+.. .|+++ .++..+.||..+...+++. ++++
T Consensus 63 ~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~~~~~~~~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~ 142 (346)
T 2q7d_A 63 PLDVIIHKLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFM 142 (346)
T ss_dssp CCSEEEECCHHHHHHHHTTCHHHHHHHHHHHHHHHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEE
T ss_pred CCCEEEeCCcccccccccCchhHHHHHHHHHHHHHHCCCeEEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEE
Confidence 35666665544 244454544443 36743 3455678888888888876 5544
Q ss_pred -------HHHHHHh--hhhCCcEEEEeCCCCC--CcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCC-CceE
Q 013241 121 -------EEAVKLA--DELGFPVMIKATAGGG--GRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-PRHI 188 (447)
Q Consensus 121 -------~e~~~~~--~~ig~PvVvKP~~g~G--g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G-~~ei 188 (447)
+++.+.. ..++||+|+||..|.| +.||.++.+.++|... +.+++|||||+. ++++
T Consensus 143 ~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~Gs~s~~v~~v~~~~~l~~~-------------~~~~lvQefI~~~G~di 209 (346)
T 2q7d_A 143 ELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNAI-------------QPPCVVQNFINHNAVLY 209 (346)
T ss_dssp EECSCCCTTHHHHHHHTTCCSSEEEECSBCSSTTCCEEEEECSGGGTTC---------------CCEEEEECCCCTTEEE
T ss_pred EEeCCCHHHHHHHHHhcCCCCCEEEEecCCCcceeeeeEEecCHHHHHhc-------------CCCEEEEEeeCCCCeEE
Confidence 2455544 3578999999997643 7799999999988642 267999999982 4899
Q ss_pred EEEEEEeCCCcEEEEeeeeecccccc-----------ce------eeEecC-------CCCCCHHHHHHHHHHHHHHHHH
Q 013241 189 EFQVLADKYGNVVHFGERDCSIQRRN-----------QK------LLEEAP-------SPALTPELRKAMGDAAVAAAAS 244 (447)
Q Consensus 189 ~v~vl~d~~g~vv~l~~r~~s~~~~~-----------~k------~~~~~P-------~~~l~~~~~~~l~~~a~~i~~a 244 (447)
.|.++++ +++....+.....+.. ++ .....| +. +++ .+++.+.|.++.++
T Consensus 210 rv~VvG~---~v~~~~r~sl~~~~~~~~~~~~~~f~s~~~~~~g~~~~~~~~~~~~~~~~-~~~--~~el~~lA~~a~~a 283 (346)
T 2q7d_A 210 KVFVVGE---SYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFE-RPS--DEVIRELSRALRQA 283 (346)
T ss_dssp EEEEETT---EEEEEEEECCCCCC----CCCCEEEEGGGTSSTTCCCGGGCCSCCCSCCC-CCC--HHHHHHHHHHHHHH
T ss_pred EEEEECC---EEEEEEEecCCCcCcCccccccccccceeeccCCcccccccccccccccc-CCC--hHHHHHHHHHHHHH
Confidence 9999843 4444322110000000 00 000111 11 222 46899999999999
Q ss_pred cCCccEeEEEEEEec-CCCEEEEEEeccCC
Q 013241 245 IGYIGVGTVEFLLDE-RGSFYFMEMNTRIQ 273 (447)
Q Consensus 245 lg~~G~~~vEf~~d~-~G~~~~iEiNpR~~ 273 (447)
||+..+ +||++++. +|++|+||||+=++
T Consensus 284 lGl~~~-gvDii~~~~~g~~~VlEVN~~PG 312 (346)
T 2q7d_A 284 LGVSLF-GIDIIINNQTGQHAVIDINAFPG 312 (346)
T ss_dssp HCCCEE-EEEEEECTTTCCEEEEEEEESCC
T ss_pred hCCceE-eeEEEeecCCCCEEEEEEeCCcc
Confidence 999854 69999985 68899999999664
No 69
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=99.29 E-value=2.6e-12 Score=130.20 Aligned_cols=165 Identities=19% Similarity=0.266 Sum_probs=114.0
Q ss_pred HHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCC-cEEEEeC--CCCCCcC---------eEEECCHH
Q 013241 87 IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGF-PVMIKAT--AGGGGRG---------MRLAKEPD 154 (447)
Q Consensus 87 ~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~-PvVvKP~--~g~Gg~G---------v~~v~~~~ 154 (447)
.+.++++|+|++......+. +++.+.++++|| |+|+||. .|+.|+| |++++|.+
T Consensus 9 K~lL~~~GIpvp~~~~~~s~--------------~ea~~~a~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~ 74 (395)
T 2fp4_B 9 KKLMSDNGVKVQRFFVADTA--------------NEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPE 74 (395)
T ss_dssp HHHHHHTTCCCCCEEEESSH--------------HHHHHHHHHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHH
T ss_pred HHHHHHCCcCCCCeEEECCH--------------HHHHHHHHHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCHH
Confidence 45678899999999988888 899999999999 8999994 5665555 99999999
Q ss_pred HHHHHHHHHHHHH--HHhc---C--CCcEEEeeccCCCceEEEEEEEeCCC--cEEEEe-eeeeccccc----cceeeEe
Q 013241 155 EFVKLLQQAKSEA--AAAF---G--NDGVYLEKYVQNPRHIEFQVLADKYG--NVVHFG-ERDCSIQRR----NQKLLEE 220 (447)
Q Consensus 155 el~~~~~~~~~~~--~~~~---~--~~~~lvEefI~G~~ei~v~vl~d~~g--~vv~l~-~r~~s~~~~----~~k~~~~ 220 (447)
|+.++++++.... ...+ + ...++||+|++.++|+.+.++.|... .++.++ ...+.+..- ..++...
T Consensus 75 e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE~va~~~~d~i~~~ 154 (395)
T 2fp4_B 75 VVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKE 154 (395)
T ss_dssp HHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCHHHHHHHCGGGCEEE
T ss_pred HHHHHHHHHhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccccCceEEEEECCCCccceeccccCCceEEEE
Confidence 9999988765331 0001 1 24699999999669999999999752 566665 333443321 3444444
Q ss_pred c--CCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEE---E------EecCCCEEEEEEeccCC
Q 013241 221 A--PSPALTPELRKAMGDAAVAAAASIGYIGVGTVEF---L------LDERGSFYFMEMNTRIQ 273 (447)
Q Consensus 221 ~--P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf---~------~d~~G~~~~iEiNpR~~ 273 (447)
. |...+++ ..+.++++.+|+.+...-++ + +.+. +++++||||++-
T Consensus 155 ~idp~~~l~~-------~~a~~l~~~lg~~~~~~~~~~~~l~~l~~l~~~~-d~~~lEINPl~~ 210 (395)
T 2fp4_B 155 QIDIIEGIKD-------SQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKI-DATQVEVNPFGE 210 (395)
T ss_dssp ECCTTTCCCH-------HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHT-TEEEEEEEEEEE
T ss_pred ecCCCCCCCH-------HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhhhC-CeEEEEeeeEEE
Confidence 3 4434665 44666667778764321111 1 1122 599999999984
No 70
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=99.25 E-value=6.8e-12 Score=126.99 Aligned_cols=164 Identities=15% Similarity=0.249 Sum_probs=110.9
Q ss_pred HHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCc-EEEEeCCCCCCc----CeEEECCHHHHHHHHH
Q 013241 87 IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFP-VMIKATAGGGGR----GMRLAKEPDEFVKLLQ 161 (447)
Q Consensus 87 ~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~P-vVvKP~~g~Gg~----Gv~~v~~~~el~~~~~ 161 (447)
.+.++++|||++......+. +++.+.++++||| +|+||..+.||+ ||+++++.+|+.++++
T Consensus 9 K~lL~~~GIpvp~~~~~~s~--------------eea~~aa~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~ 74 (388)
T 2nu8_B 9 KQLFARYGLPAPVGYACTTP--------------REAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAE 74 (388)
T ss_dssp HHHHHHTTCCCCCEEEESSH--------------HHHHHHHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHH
T ss_pred HHHHHHCCcCCCCeeEECCH--------------HHHHHHHHHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHHH
Confidence 45678899999999888888 8899999999999 999998875544 9999999999999998
Q ss_pred HHHHHHH--Hh-----cCCCcEEEeeccCCCceEEEEEEEeCC-C-cEEEEe-ee--eec-ccccc-ceeeE--ecCCCC
Q 013241 162 QAKSEAA--AA-----FGNDGVYLEKYVQNPRHIEFQVLADKY-G-NVVHFG-ER--DCS-IQRRN-QKLLE--EAPSPA 225 (447)
Q Consensus 162 ~~~~~~~--~~-----~~~~~~lvEefI~G~~ei~v~vl~d~~-g-~vv~l~-~r--~~s-~~~~~-~k~~~--~~P~~~ 225 (447)
++..... .. .....++||+|+++.+|+.+.++.|.. | .++.++ .. ++. +..++ .++.. ..|...
T Consensus 75 ~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~~~g~pvi~~~~~GGv~iE~v~~~~pd~i~~~~i~P~~g 154 (388)
T 2nu8_B 75 NWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTG 154 (388)
T ss_dssp HHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECBTTTB
T ss_pred HHhhhhhhccccCCCCcccceEEEEEccccCCcEEEEEEEecccCCcEEEEeCCCCcchhhccccCCceEEEEecCCCCC
Confidence 7653210 00 012579999999966999999999986 3 566665 21 222 22211 34444 556656
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCccEe---------EE-EEEEecCCCEEEEEEeccCC
Q 013241 226 LTPELRKAMGDAAVAAAASIGYIGVG---------TV-EFLLDERGSFYFMEMNTRIQ 273 (447)
Q Consensus 226 l~~~~~~~l~~~a~~i~~alg~~G~~---------~v-Ef~~d~~G~~~~iEiNpR~~ 273 (447)
+++....+| ++.+|+.+.. .+ +++.+. +++++||||++-
T Consensus 155 l~~~~a~~~-------~~~lG~~~~~~~~~~~~l~~l~~~~~~~--d~~~lEINPl~~ 203 (388)
T 2nu8_B 155 PMPYQGREL-------AFKLGLEGKLVQQFTKIFMGLATIFLER--DLALIEINPLVI 203 (388)
T ss_dssp CCHHHHHHH-------HHHTTCCTHHHHHHHHHHHHHHHHHHHT--TEEEEEEEEEEE
T ss_pred CCHHHHHHH-------HHHcCCCHHHHHHHHHHHHHHHHHHHhC--CEEEEEecceEE
Confidence 777654433 3445654311 00 112222 488899998874
No 71
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=98.91 E-value=9.7e-10 Score=105.79 Aligned_cols=184 Identities=14% Similarity=0.108 Sum_probs=112.7
Q ss_pred CcEEEEecCcHHHH------HHHHHHHHcCCCeeEEEeccC-hhhH-HHHHhccccCHHHHHH-HhhhhCCcEEEEeCCC
Q 013241 71 QEKILVANRGEIAV------RVIRTAHEMGIPCVAVYSTID-KDAL-HVKLADESVCIEEAVK-LADELGFPVMIKATAG 141 (447)
Q Consensus 71 ~~kvLianrgeia~------ri~r~~~~lGi~~vav~~~~d-k~~~-~~~lad~~v~i~e~~~-~~~~ig~PvVvKP~~g 141 (447)
+.++.+.|..+... .+.+.+++.|||++....... .... ...+.+ .+++.+ ....+++|+|+||..|
T Consensus 80 lr~p~~INd~~~q~~~~DK~~~~~iL~~~gIPtP~t~~~~rd~~~~~~~~~~e----~~d~i~~~g~~l~kPfVeKPv~G 155 (330)
T 3t7a_A 80 LRNPFVINDLNMQYLIQDRREVYSILQAEGILLPRYAILNRDPNNPKECNLIE----GEDHVEVNGEVFQKPFVEKPVSA 155 (330)
T ss_dssp HHCCEESBCSTHHHHHTBHHHHHHHHHHTTCCCCCEEEECCBTTBGGGSSEEE----CSSEEEETTEEEESSEEEEESBT
T ss_pred HhCCceeCCHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCCccccceec----cchhhhhccccccCCeeEccccc
Confidence 35777888776654 457888899999987665432 1000 000000 012222 2345789999999998
Q ss_pred C-----------CCcC----eEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCC-CceEEEEEEEeCCCcEEEEee
Q 013241 142 G-----------GGRG----MRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-PRHIEFQVLADKYGNVVHFGE 205 (447)
Q Consensus 142 ~-----------Gg~G----v~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G-~~ei~v~vl~d~~g~vv~l~~ 205 (447)
. .|.| ++++.|.+.....-... + .+..+|+||||+. ++++.+.++++ ++++--.
T Consensus 156 sdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~v-r------~~~~~i~QEFI~~~G~DIRv~vVG~---~vv~Am~ 225 (330)
T 3t7a_A 156 EDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNV-R------KTGSYIYEEFMPTDGTDVKVYTVGP---DYAHAEA 225 (330)
T ss_dssp TCCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSC-C------SSSCEEEEECCCCSSEEEEEEEEST---TCEEEEE
T ss_pred ccCcceeecccccCCchhhhhhhhCCcccccChhhhh-c------cCCcEEEEeccCCCCceEEEEEECC---EEEEEEE
Confidence 5 2333 34555443320000000 1 1478999999972 48999998844 5566555
Q ss_pred eeec----cccccceeeEe-cCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCc
Q 013241 206 RDCS----IQRRNQKLLEE-APSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVE 275 (447)
Q Consensus 206 r~~s----~~~~~~k~~~~-~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~ 275 (447)
|... ..+++....+. .|.. ++++. ++.|.++++++|. ++++||++.+++| +|++|+|.++.+-
T Consensus 226 R~sp~~~G~~r~N~~gG~~~~~v~-Lt~ee----k~iA~kaa~a~G~-~v~GVDlLrs~~~-~~V~EVNg~~fvk 293 (330)
T 3t7a_A 226 RKSPALDGKVERDSEGKEVRYPVI-LNARE----KLIAWKVCLAFKQ-TVCGFDLLRANGQ-SYVCDVNGFSFVK 293 (330)
T ss_dssp EECTTSSCBCCBCTTSCBCCEECC-CCHHH----HHHHHHHHHHTTB-SEEEEEEEEETTE-EEEEEEEESCCCS
T ss_pred EeCCCCCCcEEEcCCCCceeeeec-CCHHH----HHHHHHHHHHhCC-ceEEEEEEEECCc-cEEEEeCCCcccc
Confidence 5432 12222222221 2443 77655 5899999999998 5999999998755 9999999998874
No 72
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=98.78 E-value=1.3e-08 Score=103.10 Aligned_cols=104 Identities=24% Similarity=0.298 Sum_probs=82.5
Q ss_pred HHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCc----CeEEECCHHHHHHHHHH
Q 013241 87 IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGR----GMRLAKEPDEFVKLLQQ 162 (447)
Q Consensus 87 ~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~----Gv~~v~~~~el~~~~~~ 162 (447)
.+.++++|||++......+. +++.++++++|||+|+||....||+ ||+++++.+|+.+++++
T Consensus 9 K~lL~~~GIpvp~~~~~~s~--------------eea~~aa~~lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~ 74 (397)
T 3ufx_B 9 KEILARYGVPVPPGKVAYTP--------------EEAKRIAEEFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQA 74 (397)
T ss_dssp HHHHHHTTCCCCCEEEESSH--------------HHHHHHHHHHTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCeEEECCH--------------HHHHHHHHHcCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHH
Confidence 35678899999999999888 8999999999999999998854444 99999999999999887
Q ss_pred HHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCC--cEEEEe
Q 013241 163 AKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYG--NVVHFG 204 (447)
Q Consensus 163 ~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g--~vv~l~ 204 (447)
+.......+....++||||++.++|+.+.++.|... .++.++
T Consensus 75 ~~~~~~~g~~~~~vlVEe~v~~g~El~vgv~~D~~~g~pvi~~s 118 (397)
T 3ufx_B 75 ILGMNIKGLTVKKVLVAEAVDIAKEYYAGLILDRAKKRVVLMLS 118 (397)
T ss_dssp HTTCEETTEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEE
T ss_pred hhhhhccCCccceEEEEEeecCCeeEEEEEEecCCCCCcEEEEe
Confidence 653211111136899999999659999999999753 344443
No 73
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=98.27 E-value=8.9e-06 Score=81.36 Aligned_cols=157 Identities=18% Similarity=0.312 Sum_probs=92.6
Q ss_pred hCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCC-------Cc--eEEEEEEEeCCCcE
Q 013241 130 LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-------PR--HIEFQVLADKYGNV 200 (447)
Q Consensus 130 ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G-------~~--ei~v~vl~d~~g~v 200 (447)
-+.++|+||..|+.|+||+++++.+++.+.++.. ...++||+||+. ++ ++.+-++....-.+
T Consensus 146 ~~~~wI~KP~~~srG~GI~l~~~~~~i~~~~~~~---------~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts~l~v 216 (380)
T 3tig_A 146 EGNVWIAKSSSGAKGEGILISSDATELLDFIDNQ---------GQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDNQYNI 216 (380)
T ss_dssp CCCCEEEEESCC----CCBCCSCSHHHHHHHHHH---------TSCEEEEECCSSBCCBTTTTBCEEEEEEEEECTTCCE
T ss_pred CCCeEEEeCCccCCCCCEEEeCCHHHHHHHHhcc---------CCcEEEEecccCceeecCCCceeEEEEEEEEcCCCEE
Confidence 4678999999999999999999999988776431 378999999963 23 67777776542222
Q ss_pred EEE---eeeeec-------------------cccccc-eee--EecC---------------CCCCCHHHHHHHHHHHHH
Q 013241 201 VHF---GERDCS-------------------IQRRNQ-KLL--EEAP---------------SPALTPELRKAMGDAAVA 240 (447)
Q Consensus 201 v~l---~~r~~s-------------------~~~~~~-k~~--~~~P---------------~~~l~~~~~~~l~~~a~~ 240 (447)
..+ ..|-|+ +|..+. ... +..- .......+..+|.++...
T Consensus 217 y~y~~g~~Rfa~~~y~~~~~~~~~~HLTN~~iqk~~~~~y~~~~~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~ 296 (380)
T 3tig_A 217 YLYREGVLRTSSEPYSDTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRV 296 (380)
T ss_dssp EECSCCEEEECC----------------------------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHH
T ss_pred EEEcCCEEEecCCCcCccchhhhhhhccccccccccccccccccCCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 111 011111 111100 000 0000 000113455566666666
Q ss_pred HHHH----c-----CC--ccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCC
Q 013241 241 AAAS----I-----GY--IGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKL 300 (447)
Q Consensus 241 i~~a----l-----g~--~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l 300 (447)
.+.+ + .+ -.+.++||++|++.++|+||||..++-...++ -++++..++++.+--.
T Consensus 297 ~l~a~~~~i~~~~~~~~~FEl~G~D~lid~~l~~wllEVN~~P~~~q~~i-----~~l~~~~~~iavdp~f 362 (380)
T 3tig_A 297 CLSCLEPAISTKYLPYHSFQLFGFDFMVDKNLKVWLIEVNGAPACAQKLY-----AELCKGIVDLAISSVF 362 (380)
T ss_dssp HHHHHHHHHCCTTSSSEECEEEEEEEEEBTTCCEEEEEEESSCCCCTTTH-----HHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHhhhcccCCceEEEEeEEEEEcCCCcEEEEEEeCCCCccHHhH-----HHHHHHHHHHhccccc
Confidence 5544 2 12 26889999999999999999999998654332 2468888888876433
No 74
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=96.72 E-value=0.0019 Score=65.52 Aligned_cols=84 Identities=13% Similarity=0.054 Sum_probs=62.9
Q ss_pred HHHHHHhhhhC-CcEEEEeCC--CC--CCcCeEEECCHHHHHHHHHHHHHHHHHh----cCCCcEEEeeccCC--CceEE
Q 013241 121 EEAVKLADELG-FPVMIKATA--GG--GGRGMRLAKEPDEFVKLLQQAKSEAAAA----FGNDGVYLEKYVQN--PRHIE 189 (447)
Q Consensus 121 ~e~~~~~~~ig-~PvVvKP~~--g~--Gg~Gv~~v~~~~el~~~~~~~~~~~~~~----~~~~~~lvEefI~G--~~ei~ 189 (447)
+++.+.++++| ||+|+|+.. |+ -+-||+++.+++|+.+++.+........ ..-..++||++++. .+|+-
T Consensus 41 ~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~eev~~aa~~ml~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~y 120 (425)
T 3mwd_A 41 ARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120 (425)
T ss_dssp HHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEE
T ss_pred HHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHHHHHHHHHHHHhhhhhccCCCceEEEEEEEecccCCCCceEE
Confidence 88999999999 999999965 22 2348999999999998877664321100 00145899999975 48999
Q ss_pred EEEEEeCCCcEEEEe
Q 013241 190 FQVLADKYGNVVHFG 204 (447)
Q Consensus 190 v~vl~d~~g~vv~l~ 204 (447)
+.+..|..|.++.++
T Consensus 121 lgi~~Dr~gpvI~~s 135 (425)
T 3mwd_A 121 VCIYATREGDYVLFH 135 (425)
T ss_dssp EEEEEETTEEEEEEE
T ss_pred EEEEecCCCCEEEEE
Confidence 999999888777664
No 75
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=96.13 E-value=0.017 Score=63.25 Aligned_cols=84 Identities=13% Similarity=0.027 Sum_probs=62.5
Q ss_pred HHHHHHhhhhC-CcEEEEeCCCCC----CcCeEEECCHHHHHHHHHHHHHHHHHh----cCCCcEEEeeccCC--CceEE
Q 013241 121 EEAVKLADELG-FPVMIKATAGGG----GRGMRLAKEPDEFVKLLQQAKSEAAAA----FGNDGVYLEKYVQN--PRHIE 189 (447)
Q Consensus 121 ~e~~~~~~~ig-~PvVvKP~~g~G----g~Gv~~v~~~~el~~~~~~~~~~~~~~----~~~~~~lvEefI~G--~~ei~ 189 (447)
+++.+.++++| +|+|+|+..-.| +-||+++.|++|+.+++.+........ ..-..++||++++. .+|+-
T Consensus 41 ~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~eEa~~aa~~iLg~~~~~~~p~~~V~gvLVE~m~~~~~~~ElY 120 (829)
T 3pff_A 41 ARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120 (829)
T ss_dssp HHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEE
T ss_pred HHHHHHHHHhCCCCEEEEecccccCCCcCCeEEEECCHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEecccCCCccEEE
Confidence 88888888888 999999954333 347899999999998887665322110 00145899999974 48999
Q ss_pred EEEEEeCCCcEEEEe
Q 013241 190 FQVLADKYGNVVHFG 204 (447)
Q Consensus 190 v~vl~d~~g~vv~l~ 204 (447)
+.+..|..|.++.++
T Consensus 121 vgI~~Dr~gpvIm~s 135 (829)
T 3pff_A 121 VCIYATREGDYVLFH 135 (829)
T ss_dssp EEEEEETTEEEEEEE
T ss_pred EEEEecCCCCEEEEE
Confidence 999999888877665
No 76
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=89.95 E-value=0.34 Score=49.60 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=45.9
Q ss_pred CCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEE--ECCHHHHHHHHHHHHHHHHHhcC
Q 013241 95 IPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRL--AKEPDEFVKLLQQAKSEAAAAFG 172 (447)
Q Consensus 95 i~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~--v~~~~el~~~~~~~~~~~~~~~~ 172 (447)
++.+..+.+.+. ++.....+... -+||||+.|.||.|+.+ --+.+++++..+++...
T Consensus 341 l~~VpT~~c~~~--------------~~~~~vl~~l~-~lViKp~~g~gg~gv~iG~~~s~~e~~~~~~~i~~~------ 399 (474)
T 3n6x_A 341 LSNVPTYQLSKA--------------DDLKYVLDNLA-ELVVKEVQGSGGYGMLVGPAASKQELEDFRQRILAN------ 399 (474)
T ss_dssp SEECCCEETTSH--------------HHHHHHHHSGG-GEEEEECCCE-----EEGGGCCHHHHHHHHHHHHHS------
T ss_pred ccCCCceecCCH--------------HHHHHHHhchh-heEEEecCCCCCCceEECCcCCHHHHHHHHHHHHhC------
Confidence 556667777776 56565665554 68999999999999987 35677777776666542
Q ss_pred CCcEEEeeccCC
Q 013241 173 NDGVYLEKYVQN 184 (447)
Q Consensus 173 ~~~~lvEefI~G 184 (447)
...++.||+++-
T Consensus 400 p~~yIaQe~v~l 411 (474)
T 3n6x_A 400 PANYIAQPTLAL 411 (474)
T ss_dssp GGGEEEEECCCC
T ss_pred CCCEEEeeccCC
Confidence 356999999986
No 77
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=75.05 E-value=5.8 Score=32.80 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=29.3
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEec
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~ 103 (447)
.++++|.+-|.++..+++.+.+.|.+++.+...
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECC
Confidence 579999999999999999999999988877553
No 78
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=73.49 E-value=25 Score=27.31 Aligned_cols=78 Identities=15% Similarity=0.265 Sum_probs=56.2
Q ss_pred ccccCCcEEEEec-CcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCC
Q 013241 66 KVTCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGG 144 (447)
Q Consensus 66 ~~~~~~~kvLian-rgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg 144 (447)
+-.+.|.|+||.. ....-..+.+...++|..+.......|. .++.++-.++. +.|
T Consensus 46 aeeknfekiliisndkqllkemlelisklgykvflllqdqde--------------neleefkrkie----------sqg 101 (134)
T 2lci_A 46 AEEKNFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQDE--------------NELEEFKRKIE----------SQG 101 (134)
T ss_dssp HHCCSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCH--------------HHHHHHHHHHH----------TTT
T ss_pred HhhcCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCch--------------hHHHHHHHHHH----------hCC
Confidence 4456788887765 5556667788888999999888888887 66676665552 345
Q ss_pred cCeEEECCHHHHHHHHHHHHHHH
Q 013241 145 RGMRLAKEPDEFVKLLQQAKSEA 167 (447)
Q Consensus 145 ~Gv~~v~~~~el~~~~~~~~~~~ 167 (447)
..++.|.+.+|....+......+
T Consensus 102 yevrkvtddeealkivrefmqka 124 (134)
T 2lci_A 102 YEVRKVTDDEEALKIVREFMQKA 124 (134)
T ss_dssp CEEEEECCHHHHHHHHHHHHHHH
T ss_pred eeeeecCChHHHHHHHHHHHHhc
Confidence 67889999988877776655443
No 79
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=72.03 E-value=7.6 Score=35.17 Aligned_cols=54 Identities=19% Similarity=0.115 Sum_probs=41.8
Q ss_pred CcEEEEe--cCcHHHHHHHHHHHHcCC--CeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEE-Ee
Q 013241 71 QEKILVA--NRGEIAVRVIRTAHEMGI--PCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMI-KA 138 (447)
Q Consensus 71 ~~kvLia--nrgeia~ri~r~~~~lGi--~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVv-KP 138 (447)
|+||+++ +.|+.+..+++++.+.++ .++.+.+..+. ....+.+++.|.|++. .|
T Consensus 1 m~rI~vl~SG~g~~~~~~l~~l~~~~~~~~i~~Vvs~~~~--------------~~~~~~A~~~gIp~~~~~~ 59 (216)
T 2ywr_A 1 MLKIGVLVSGRGSNLQAIIDAIESGKVNASIELVISDNPK--------------AYAIERCKKHNVECKVIQR 59 (216)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEESCTT--------------CHHHHHHHHHTCCEEECCG
T ss_pred CCEEEEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEeCCCC--------------hHHHHHHHHcCCCEEEeCc
Confidence 3578888 899999999999988777 56677776555 4457788899999875 44
No 80
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=71.26 E-value=9.6 Score=34.91 Aligned_cols=52 Identities=15% Similarity=0.064 Sum_probs=39.7
Q ss_pred CcEEEEe--cCcHHHHHHHHHHHHc--CCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEE
Q 013241 71 QEKILVA--NRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMI 136 (447)
Q Consensus 71 ~~kvLia--nrgeia~ri~r~~~~l--Gi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVv 136 (447)
+.||+++ +.|+.+..+++++.+. +..++.+.+..+. ....+.+++.|.|++.
T Consensus 22 ~~rI~~l~SG~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~--------------~~~~~~A~~~gIp~~~ 77 (229)
T 3auf_A 22 MIRIGVLISGSGTNLQAILDGCREGRIPGRVAVVISDRAD--------------AYGLERARRAGVDALH 77 (229)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHTTSSSEEEEEEEESSTT--------------CHHHHHHHHTTCEEEE
T ss_pred CcEEEEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEcCCCc--------------hHHHHHHHHcCCCEEE
Confidence 4688887 8999999999999876 4566777766443 3456778899999874
No 81
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=68.24 E-value=8.2 Score=31.61 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=28.7
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEe
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~ 102 (447)
+++++|.+.|.++..+++.+.+.|.+++.+..
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~ 37 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDK 37 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEC
Confidence 57899999999999999999999998877654
No 82
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=60.10 E-value=57 Score=25.23 Aligned_cols=71 Identities=23% Similarity=0.356 Sum_probs=53.1
Q ss_pred EEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEEECC
Q 013241 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKE 152 (447)
Q Consensus 73 kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~ 152 (447)
-+.+.+..|-|-..+|..+.+|..+.-+....|. ..+.++..+.. ..|..++-+.+
T Consensus 54 vvvvvddkewaekairfvkslgaqvliiiydqdq--------------nrleefsrevr----------rrgfevrtvts 109 (134)
T 2l69_A 54 VVVVVDDKEWAEKAIRFVKSLGAQVLIIIYDQDQ--------------NRLEEFSREVR----------RRGFEVRTVTS 109 (134)
T ss_dssp EEEECSSHHHHHHHHHHHHHHCCCCEEEEECSCH--------------HHHHHHHHHHH----------HTTCCEEEESS
T ss_pred EEEEEccHHHHHHHHHHHHhcCCeEEEEEEeCch--------------hHHHHHHHHHH----------hcCceEEEecC
Confidence 4566778889999999999999998877777787 44445544331 12346788999
Q ss_pred HHHHHHHHHHHHHHH
Q 013241 153 PDEFVKLLQQAKSEA 167 (447)
Q Consensus 153 ~~el~~~~~~~~~~~ 167 (447)
++++...++++.++.
T Consensus 110 pddfkkslerlirev 124 (134)
T 2l69_A 110 PDDFKKSLERLIREV 124 (134)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999888764
No 83
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=59.85 E-value=28 Score=31.25 Aligned_cols=53 Identities=8% Similarity=0.155 Sum_probs=39.0
Q ss_pred cEE--EEecCcHHHHHHHHHHHHc--CCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEE-Ee
Q 013241 72 EKI--LVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMI-KA 138 (447)
Q Consensus 72 ~kv--Lianrgeia~ri~r~~~~l--Gi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVv-KP 138 (447)
+|+ ++.+.|+.+..+++++.+. +..++.+.+..+. ..+.+.+++.|.|+.. .|
T Consensus 4 ~ki~vl~sG~g~~~~~~l~~l~~~~l~~~I~~Vit~~~~--------------~~v~~~A~~~gIp~~~~~~ 61 (212)
T 3av3_A 4 KRLAVFASGSGTNFQAIVDAAKRGDLPARVALLVCDRPG--------------AKVIERAARENVPAFVFSP 61 (212)
T ss_dssp EEEEEECCSSCHHHHHHHHHHHTTCCCEEEEEEEESSTT--------------CHHHHHHHHTTCCEEECCG
T ss_pred cEEEEEEECCcHHHHHHHHHHHhCCCCCeEEEEEeCCCC--------------cHHHHHHHHcCCCEEEeCc
Confidence 455 5568899999999999877 4566677765444 3567788899999875 44
No 84
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=56.20 E-value=9.9 Score=29.02 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=25.2
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCee
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCV 98 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~v 98 (447)
..+|+--+.|++|.+|.+.++++|+|++
T Consensus 17 aP~VvAKG~~~~A~~I~~~A~e~~VPi~ 44 (83)
T 3bzy_B 17 LPLVIETGKDAKALQIIKLAELYDIPVI 44 (83)
T ss_dssp SCEEEEEEETHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEeCcHHHHHHHHHHHHcCCCEE
Confidence 4688888899999999999999999965
No 85
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=56.05 E-value=13 Score=39.47 Aligned_cols=45 Identities=11% Similarity=0.185 Sum_probs=15.7
Q ss_pred cEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCC
Q 013241 133 PVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN 184 (447)
Q Consensus 133 PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G 184 (447)
..|+||..|.+|.||.+.+...+.. + .....+++.++++|+|++=
T Consensus 544 ~yV~KPi~gReG~nV~I~~~~~~~~---~----~~~g~y~~~~~IyQe~~~l 588 (652)
T 2vob_A 544 GYAKKPIVGRVGSNVIITSGDGVVH---A----ESGGKYGKRNMIYQQLFEL 588 (652)
T ss_dssp CEEEEECC----------------------------------CEEEEECCC-
T ss_pred CeEeccCCCCCCCCEEEEcCCchhh---h----hcccccCCCCeEEEecccC
Confidence 3899999999999999987533321 1 1122345689999999985
No 86
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=52.34 E-value=11 Score=29.40 Aligned_cols=28 Identities=32% Similarity=0.428 Sum_probs=25.2
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCee
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCV 98 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~v 98 (447)
..+|+--+.|++|.+|.+.+++.|||++
T Consensus 17 AP~VvAKG~~~~A~~I~e~A~e~gVPi~ 44 (93)
T 2vt1_B 17 APFISLIETNQCALAVRKYANEVGIPTV 44 (93)
T ss_dssp SCEEEEEEEHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEeCcHHHHHHHHHHHHcCCCEE
Confidence 4688888899999999999999999965
No 87
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=51.42 E-value=30 Score=30.57 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=26.8
Q ss_pred EEEEecCcHHHHHHHHHHHHcCCCeeEEEe
Q 013241 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 73 kvLianrgeia~ri~r~~~~lGi~~vav~~ 102 (447)
||+|.+.|.++..+++.+.+.|.+++.+..
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~ 31 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYGVVIINK 31 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEC
Confidence 689999999999999999999998877653
No 88
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=51.40 E-value=11 Score=30.36 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=27.1
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEE
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~ 101 (447)
.+++++|.+.|.++..+++.+.+.|.++..+.
T Consensus 5 ~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d 36 (144)
T 2hmt_A 5 KNKQFAVIGLGRFGGSIVKELHRMGHEVLAVD 36 (144)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCCEEEE
T ss_pred cCCcEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 35789999999999999999999998766553
No 89
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=48.58 E-value=39 Score=30.60 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=31.1
Q ss_pred CCccccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEE
Q 013241 64 ALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 64 ~~~~~~~~~kvLianrgeia~ri~r~~~~lGi~~vav~ 101 (447)
++.++..-++|||.+.|++|.+.++.+.+.|..+..+.
T Consensus 24 Pifl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVva 61 (223)
T 3dfz_A 24 TVMLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVA 61 (223)
T ss_dssp EEEECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEEC
T ss_pred ccEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEC
Confidence 34555666899999999999999999999998765543
No 90
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=48.28 E-value=12 Score=29.39 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=25.3
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCee
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCV 98 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~v 98 (447)
..+|+--+.|++|.+|.+.++++|+|++
T Consensus 32 aP~VvAKG~~~~A~~I~~~A~e~gVPi~ 59 (97)
T 3t7y_A 32 APWIIAMGVNLRAKRIIAEAEKYGVPIM 59 (97)
T ss_dssp SCEEEEEEEHHHHHHHHHHHHHHTCCEE
T ss_pred CCEEEEEeCcHHHHHHHHHHHHcCCeEE
Confidence 5788888999999999999999999965
No 91
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=47.62 E-value=13 Score=29.36 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=25.2
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCee
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCV 98 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~v 98 (447)
..+|+--+.|++|.+|.+.++++|||++
T Consensus 17 AP~VvAKG~~~~A~~I~e~A~e~gVPi~ 44 (98)
T 3c01_E 17 IPMISVYETNQRALAVRAYAEKVGVPVI 44 (98)
T ss_dssp SCEEEEEEEHHHHHHHHHHHHHHTCCEE
T ss_pred CCEEEEEeCcHHHHHHHHHHHHcCCCee
Confidence 4688888899999999999999999965
No 92
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=46.72 E-value=20 Score=35.67 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=29.1
Q ss_pred cEEEEecCcHHHHHHHHHHHHcCCCeeEEEecc
Q 013241 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (447)
Q Consensus 72 ~kvLianrgeia~ri~r~~~~lGi~~vav~~~~ 104 (447)
.+|+|++-|.++..+++.+.+.|++++.+....
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~ 37 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP 37 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 479999999999999999999999988875543
No 93
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=46.57 E-value=95 Score=27.83 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=26.5
Q ss_pred ccCCcEEEEec-CcHHHHHHHHHHHHcCCCeeEEE
Q 013241 68 TCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 68 ~~~~~kvLian-rgeia~ri~r~~~~lGi~~vav~ 101 (447)
+.+++++||.+ .+-|+..+++.+.+.|..++.+.
T Consensus 4 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~ 38 (264)
T 3i4f_A 4 GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTY 38 (264)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred ccccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEc
Confidence 34568899998 46899999999999998766553
No 94
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=46.51 E-value=16 Score=28.28 Aligned_cols=30 Identities=13% Similarity=0.110 Sum_probs=25.3
Q ss_pred CCcEEEEecCcHHHHHHHHHHHHcC-CCeeE
Q 013241 70 RQEKILVANRGEIAVRVIRTAHEMG-IPCVA 99 (447)
Q Consensus 70 ~~~kvLianrgeia~ri~r~~~~lG-i~~va 99 (447)
++++|+|.+.|-++..+++.+.+.| ..+..
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~ 34 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTV 34 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEE
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEE
Confidence 4579999999999999999999999 44333
No 95
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=45.79 E-value=42 Score=27.68 Aligned_cols=31 Identities=13% Similarity=0.282 Sum_probs=27.9
Q ss_pred cEEEEecCcHHHHHHHHHHHHcCCCeeEEEe
Q 013241 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 72 ~kvLianrgeia~ri~r~~~~lGi~~vav~~ 102 (447)
++++|.+.|.++.++++.+.+.|.++..+..
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~ 34 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQRGQNVTVISN 34 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Confidence 6899999999999999999999998777654
No 96
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=45.36 E-value=7.2 Score=38.55 Aligned_cols=51 Identities=25% Similarity=0.326 Sum_probs=37.6
Q ss_pred EEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcC---CCcEEEeeccCC
Q 013241 134 VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG---NDGVYLEKYVQN 184 (447)
Q Consensus 134 vVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~---~~~~lvEefI~G 184 (447)
|+||+..|.-|.||..|++.+|+...=.+.+..-...-+ -..+||||=|.-
T Consensus 280 V~VKADaGTYGMGImtV~s~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T 333 (432)
T 3k1t_A 280 VIVKADAGTYGMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKVSEVILQEGVYT 333 (432)
T ss_dssp EEEEEECGGGCEEEEEESSGGGGSSCCHHHHHHHHCSSSSSCCCEEEEEECCCC
T ss_pred EEEEcCCCCCCceEEEecCHHHHHHHhHHhhhhhhhccCCCccceEEEecCcch
Confidence 799999999999999999999987655444433221111 357999997765
No 97
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=45.29 E-value=17 Score=33.39 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=28.9
Q ss_pred ccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEec
Q 013241 68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (447)
Q Consensus 68 ~~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~ 103 (447)
+.|++||||.+.|-++..+++.+.+.|..+..+...
T Consensus 2 ~~m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~ 37 (286)
T 3ius_A 2 NAMTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRN 37 (286)
T ss_dssp ---CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESC
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcC
Confidence 346789999999999999999999999887766543
No 98
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=45.24 E-value=9.7 Score=40.24 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=31.8
Q ss_pred cEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCC
Q 013241 133 PVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN 184 (447)
Q Consensus 133 PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G 184 (447)
..|+||..|..|.||.+++..++.. .+....|++.+++.|+|++-
T Consensus 529 ~yV~KPi~gReG~nV~i~~~~~~~~-------~~~~~~y~~~~~IyQe~~~l 573 (619)
T 2io8_A 529 GYAVKPIAGRCGSNIDLVSHHEEVL-------DKTSGKFAEQKNIYQQLWCL 573 (619)
T ss_dssp CEEEEETTCCTTTTCEEECTTSCEE-------EECCCTTTTSCEEEEECCCC
T ss_pred CEEEccCCCCCCCCEEEEeCCChhH-------hhccccccCCCeEEEEecCC
Confidence 3899999999999999997622210 01112245678999999986
No 99
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=45.11 E-value=25 Score=29.19 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=27.5
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEe
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~ 102 (447)
-++|+|.+.|.++..+++.+.+.|.++..+..
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~ 50 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDK 50 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEC
Confidence 47899999999999999999999987665543
No 100
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=44.06 E-value=1.5e+02 Score=27.38 Aligned_cols=79 Identities=11% Similarity=0.035 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCC---
Q 013241 151 KEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALT--- 227 (447)
Q Consensus 151 ~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~--- 227 (447)
.+.++|.+.+++++... -.+-.+|+.+|-.-+.+-++ |..|.++..-. + ..|...++
T Consensus 190 ~~~~~l~~~l~~iR~~G------ya~~~~E~~~gv~~vAaPV~-~~~g~~~aals--v-----------s~p~~r~~~~~ 249 (275)
T 3mq0_A 190 AGLSQLEEELALTRARG------YSIDDGQIREGMLCIGAAIR-DYSGAASAGIA--I-----------SLIRSEASDEK 249 (275)
T ss_dssp CSHHHHHHHHHHHHHHT------SEEEESSSSTTEEEEEEEEE-CTTSCEEEEEE--E-----------EEETTSCCTTH
T ss_pred CCHHHHHHHHHHHHHcC------eEEeCcccccCcEEEEEEEE-CCCCCEEEEEE--E-----------EEEhhhcCHHH
Confidence 46777777787777653 45667889999556666665 55666654211 1 11322233
Q ss_pred -HHHHHHHHHHHHHHHHHcCCcc
Q 013241 228 -PELRKAMGDAAVAAAASIGYIG 249 (447)
Q Consensus 228 -~~~~~~l~~~a~~i~~alg~~G 249 (447)
+++.+.+.+.+.++-+.+||.+
T Consensus 250 ~~~~~~~l~~aA~~Is~~lg~~~ 272 (275)
T 3mq0_A 250 IAYLGEELRTTANALSEKLGYRS 272 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHhCCCc
Confidence 4667788889999999999864
No 101
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=43.95 E-value=30 Score=29.53 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=27.4
Q ss_pred cEEEEecCcHHHHHHHHHHHHc-CCCeeEEEe
Q 013241 72 EKILVANRGEIAVRVIRTAHEM-GIPCVAVYS 102 (447)
Q Consensus 72 ~kvLianrgeia~ri~r~~~~l-Gi~~vav~~ 102 (447)
++++|.+-|.++..+++.+.+. |.+++.+..
T Consensus 40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~ 71 (183)
T 3c85_A 40 AQVLILGMGRIGTGAYDELRARYGKISLGIEI 71 (183)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred CcEEEECCCHHHHHHHHHHHhccCCeEEEEEC
Confidence 5899999999999999999999 998776644
No 102
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=42.58 E-value=1.3e+02 Score=23.99 Aligned_cols=67 Identities=18% Similarity=0.333 Sum_probs=48.5
Q ss_pred EecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHH
Q 013241 76 VANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDE 155 (447)
Q Consensus 76 ianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~e 155 (447)
....-||-..|.+..++.|+.++..|+..|... -.+.++++. ..|..++-+.+.++
T Consensus 8 fssdpeilkeivreikrqgvrvvllysdqdekr--------------rrerleefe----------kqgvdvrtvedked 63 (162)
T 2l82_A 8 FSSDPEILKEIVREIKRQGVRVVLLYSDQDEKR--------------RRERLEEFE----------KQGVDVRTVEDKED 63 (162)
T ss_dssp EESCHHHHHHHHHHHHHTTCEEEEEECCSCHHH--------------HHHHHHHHH----------TTTCEEEECCSHHH
T ss_pred ecCCHHHHHHHHHHHHhCCeEEEEEecCchHHH--------------HHHHHHHHH----------HcCCceeeeccHHH
Confidence 344568899999999999999999999988622 222222221 23567788999999
Q ss_pred HHHHHHHHHHH
Q 013241 156 FVKLLQQAKSE 166 (447)
Q Consensus 156 l~~~~~~~~~~ 166 (447)
+.+.+..++..
T Consensus 64 frenireiwer 74 (162)
T 2l82_A 64 FRENIREIWER 74 (162)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 98888777654
No 103
>3obf_A Putative transcriptional regulator, ICLR family; structural genomics, PSI-2, protein structure initiative; 2.16A {Arthrobacter aurescens}
Probab=40.64 E-value=1.2e+02 Score=25.51 Aligned_cols=78 Identities=18% Similarity=0.155 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCH--
Q 013241 151 KEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTP-- 228 (447)
Q Consensus 151 ~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~-- 228 (447)
.+.++|.+ ++++++.. -.+-.+|+.+|-.-+.+-++ |..|.++..-. + ..|...+++
T Consensus 94 ~~~~~l~~-l~~iR~~G------ya~~~~e~~~g~~~iAaPI~-~~~g~~~aals--v-----------~~p~~r~~~~~ 152 (176)
T 3obf_A 94 AVEAYLLR-LKESMERG------WAVNFGETSIEEVGVASPVY-DHRGNMVASVL--I-----------PAPKFRVSQDT 152 (176)
T ss_dssp HHHHHHHH-HHHHHHHT------SEEEESSSSTTEEEEEEEEE-CTTSCEEEEEE--E-----------EEEGGGCCHHH
T ss_pred CCHHHHHH-HHHHHHcC------CEeeccccccCcEEEEEEEE-CCCCCEEEEEE--e-----------EeehhhCCHHH
Confidence 45677888 88777653 34567889998556777666 55566654211 1 112222443
Q ss_pred --HHHHHHHHHHHHHHHHcCCcc
Q 013241 229 --ELRKAMGDAAVAAAASIGYIG 249 (447)
Q Consensus 229 --~~~~~l~~~a~~i~~alg~~G 249 (447)
++.+.+.+.+.++-+.|||.+
T Consensus 153 ~~~~~~~l~~aa~~is~~lg~~~ 175 (176)
T 3obf_A 153 LNSLGEACAAAAAKVTTRLGGRA 175 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC
Confidence 456678888888889999875
No 104
>1tf1_A Negative regulator of allantoin and glyoxylate utilization operons; midwest center for structural genomics, GLCR, ligand binding domain; 1.80A {Escherichia coli} SCOP: d.110.2.2
Probab=39.74 E-value=1.8e+02 Score=25.09 Aligned_cols=80 Identities=25% Similarity=0.217 Sum_probs=51.7
Q ss_pred ECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCC--
Q 013241 150 AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALT-- 227 (447)
Q Consensus 150 v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~-- 227 (447)
+.+.++|.+.++++++.. -.+-.+|+.+|-.-+.+-++ |..|.++..-. ++ .|...++
T Consensus 113 ~~~~~~l~~~l~~iR~~G------ya~~~~e~~~gv~~iAaPI~-~~~g~~~aals--vs-----------~p~~r~~~~ 172 (198)
T 1tf1_A 113 LVDMPTLLKDLEQARELG------YTVDKEEHVVGLNCIASAIY-DDVGSVVAAIS--IS-----------GPSSRLTED 172 (198)
T ss_dssp CCSHHHHHHHHHHHHHHT------CEEEESSSSTTEEEEEEEEE-CTTSCEEEEEE--EE-----------EETTTSCGG
T ss_pred CCCHHHHHHHHHHHHHhC------CEEeccccccCceEEEEEEE-CCCCCEEEEEE--Ee-----------eehHhCCHH
Confidence 357889998888887763 34567889998556666665 55666553211 11 1322233
Q ss_pred --HHHHHHHHHHHHHHHHHcCCcc
Q 013241 228 --PELRKAMGDAAVAAAASIGYIG 249 (447)
Q Consensus 228 --~~~~~~l~~~a~~i~~alg~~G 249 (447)
+++.+.+.+.+.++-+.+|+.+
T Consensus 173 ~~~~~~~~l~~aA~~Is~~lg~~~ 196 (198)
T 1tf1_A 173 RFVSQGELVRDTARDISTALGLKA 196 (198)
T ss_dssp GHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccC
Confidence 3566778888888888888764
No 105
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=39.12 E-value=2.3e+02 Score=25.93 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=26.0
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEEEe
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav~~ 102 (447)
-+++||.+ .+-|+..+++.+.+.|..++.+..
T Consensus 47 gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r 79 (291)
T 3ijr_A 47 GKNVLITGGDSGIGRAVSIAFAKEGANIAIAYL 79 (291)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 47899988 468999999999999988665544
No 106
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=39.04 E-value=78 Score=24.95 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=25.2
Q ss_pred cEEEEecCcHHHHHHHHHHHHcCCCeeEE
Q 013241 72 EKILVANRGEIAVRVIRTAHEMGIPCVAV 100 (447)
Q Consensus 72 ~kvLianrgeia~ri~r~~~~lGi~~vav 100 (447)
.+|+|.+.|.++..+++.+.+.|.++..+
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~ 33 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLI 33 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 37999999999999999999999876554
No 107
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=38.96 E-value=2e+02 Score=26.05 Aligned_cols=80 Identities=21% Similarity=0.209 Sum_probs=49.0
Q ss_pred ECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCH-
Q 013241 150 AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTP- 228 (447)
Q Consensus 150 v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~- 228 (447)
+.+.++|.+.+++++... -.+-.+|+.+|-.-+.+-++ |..|.++..-. -..|...+++
T Consensus 173 ~~~~~~l~~~l~~iR~~G------ya~~~~e~~~g~~~iAaPI~-~~~g~~~aals-------------vs~p~~r~~~~ 232 (257)
T 2g7u_A 173 IGTAAELERELAKVREQG------FALTSEELEKGLISLAAPVH-DAGGTVVGVVA-------------CSTSSARNTPA 232 (257)
T ss_dssp CCSHHHHHHHHHHHHHHS------SEEEESSSSTTEEEEEEEEE-CTTSCEEEEEE-------------EEEETTTCCHH
T ss_pred CCCHHHHHHHHHHHHHhC------CEEeccccccCCEEEEEEEE-CCCCCEEEEEE-------------EEeehHhcCHH
Confidence 456677777777766552 34567888888555666665 55666654311 1124444553
Q ss_pred ----HHHHHHHHHHHHHHHHcCCcc
Q 013241 229 ----ELRKAMGDAAVAAAASIGYIG 249 (447)
Q Consensus 229 ----~~~~~l~~~a~~i~~alg~~G 249 (447)
++.+.+.+.+.++-+.+||.|
T Consensus 233 ~~~~~~~~~l~~aA~~Is~~lg~~~ 257 (257)
T 2g7u_A 233 QFREQAVPCVLAAAAALSADMGFAG 257 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCC
Confidence 345677788888888888864
No 108
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=38.89 E-value=2e+02 Score=25.79 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=46.2
Q ss_pred CCcEEEEecCc---HHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCc-EEEEeCCCCCCc
Q 013241 70 RQEKILVANRG---EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFP-VMIKATAGGGGR 145 (447)
Q Consensus 70 ~~~kvLianrg---eia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~P-vVvKP~~g~Gg~ 145 (447)
.=|.+||.+.+ =|+..+++.+.+.|..++..+...+. . +++.+.+++.+-+ +..-+.+
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~--~-----------~~~~~~~~~~~~~~~~~~~~D----- 66 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERS--R-----------KELEKLLEQLNQPEAHLYQID----- 66 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGG--H-----------HHHHHHHGGGTCSSCEEEECC-----
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHH--H-----------HHHHHHHHhcCCCcEEEEEcc-----
Confidence 34788888732 39999999999999987766543322 1 4555555555321 1111111
Q ss_pred CeEEECCHHHHHHHHHHHHHH
Q 013241 146 GMRLAKEPDEFVKLLQQAKSE 166 (447)
Q Consensus 146 Gv~~v~~~~el~~~~~~~~~~ 166 (447)
+.+++++.+.++++.++
T Consensus 67 ----v~~~~~v~~~~~~~~~~ 83 (256)
T 4fs3_A 67 ----VQSDEEVINGFEQIGKD 83 (256)
T ss_dssp ----TTCHHHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHHH
Confidence 45788888888776544
No 109
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=37.81 E-value=25 Score=33.08 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=27.6
Q ss_pred cEEEEecCcHHHHHHHHHHHHcCCCeeEEEecc
Q 013241 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (447)
Q Consensus 72 ~kvLianrgeia~ri~r~~~~lGi~~vav~~~~ 104 (447)
.||+|+++| .+..++++++++|+.++.+....
T Consensus 3 m~Ililg~g-~~~~l~~a~~~~G~~v~~~~~~~ 34 (334)
T 2r85_A 3 VRIATYASH-SALQILKGAKDEGFETIAFGSSK 34 (334)
T ss_dssp SEEEEESST-THHHHHHHHHHTTCCEEEESCGG
T ss_pred eEEEEECCh-hHHHHHHHHHhCCCEEEEEECCC
Confidence 389999999 99999999999999988775543
No 110
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=37.71 E-value=1.8e+02 Score=26.51 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=43.9
Q ss_pred cEEEEecC-cHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEEE
Q 013241 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLA 150 (447)
Q Consensus 72 ~kvLianr-geia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v 150 (447)
|.+||.+. +=|+..+++.+.+.|..++.+.. +.... +++.+.++..|..++.-+.+ +
T Consensus 8 KvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~--~~~~~-----------~~~~~~i~~~g~~~~~~~~D---------v 65 (254)
T 4fn4_A 8 KVVIVTGAGSGIGRAIAKKFALNDSIVVAVEL--LEDRL-----------NQIVQELRGMGKEVLGVKAD---------V 65 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEES--CHHHH-----------HHHHHHHHHTTCCEEEEECC---------T
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEEC--CHHHH-----------HHHHHHHHhcCCcEEEEEcc---------C
Confidence 67788773 36889999999999988766543 44111 23333334444333322222 4
Q ss_pred CCHHHHHHHHHHHHHH
Q 013241 151 KEPDEFVKLLQQAKSE 166 (447)
Q Consensus 151 ~~~~el~~~~~~~~~~ 166 (447)
.+++++++.++++.++
T Consensus 66 t~~~~v~~~~~~~~~~ 81 (254)
T 4fn4_A 66 SKKKDVEEFVRRTFET 81 (254)
T ss_dssp TSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6788888887776544
No 111
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=37.26 E-value=2.3e+02 Score=25.50 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=27.0
Q ss_pred ccccCCcEEEEec-CcHHHHHHHHHHHHcCCCeeEE
Q 013241 66 KVTCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAV 100 (447)
Q Consensus 66 ~~~~~~~kvLian-rgeia~ri~r~~~~lGi~~vav 100 (447)
+.+..-+++||.+ .+-|+..+++.+.+.|..++..
T Consensus 22 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~ 57 (266)
T 3grp_A 22 MFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLH 57 (266)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 3344457899988 4689999999999999876554
No 112
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=37.15 E-value=66 Score=30.16 Aligned_cols=35 Identities=14% Similarity=0.071 Sum_probs=29.2
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccCh
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk 106 (447)
-+++||++.|.++..++..+.++|+..+.+.. ++.
T Consensus 122 ~k~vlvlGaGGaaraia~~L~~~G~~~v~v~n-Rt~ 156 (282)
T 3fbt_A 122 NNICVVLGSGGAARAVLQYLKDNFAKDIYVVT-RNP 156 (282)
T ss_dssp TSEEEEECSSTTHHHHHHHHHHTTCSEEEEEE-SCH
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEe-CCH
Confidence 47999999999999999999999997666554 444
No 113
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=36.98 E-value=1.8e+02 Score=26.82 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=27.3
Q ss_pred CCcEEEEecCc---HHHHHHHHHHHHcCCCeeEEEec
Q 013241 70 RQEKILVANRG---EIAVRVIRTAHEMGIPCVAVYST 103 (447)
Q Consensus 70 ~~~kvLianrg---eia~ri~r~~~~lGi~~vav~~~ 103 (447)
.-+++||.+.+ -|+..+++.+.+.|..++.+...
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~ 65 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLS 65 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCC
Confidence 34789999864 79999999999999987665543
No 114
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=36.22 E-value=26 Score=28.82 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=25.3
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCee
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCV 98 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~v 98 (447)
..+|+--+.|++|.+|.+.++++|||++
T Consensus 61 AP~VvAKG~~~~A~~I~~~A~e~~VPi~ 88 (123)
T 2jli_A 61 LPLVTFKYTDAQVQTVRKIAEEEGVPIL 88 (123)
T ss_dssp SCEEEEEEETHHHHHHHHHHHHHTCCEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHcCCCEE
Confidence 5688888899999999999999999965
No 115
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=35.91 E-value=2.6e+02 Score=25.62 Aligned_cols=34 Identities=9% Similarity=0.005 Sum_probs=27.4
Q ss_pred CCcEEEEec-CcHHHHHHHHHHHHcCCCeeEEEec
Q 013241 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (447)
Q Consensus 70 ~~~kvLian-rgeia~ri~r~~~~lGi~~vav~~~ 103 (447)
.-+++||.+ .+-|+..+++.+.+.|..++.+...
T Consensus 27 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~ 61 (299)
T 3t7c_A 27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDVC 61 (299)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecc
Confidence 347899988 4579999999999999988776543
No 116
>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cycliz membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A
Probab=35.43 E-value=26 Score=29.32 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=25.3
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCee
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCV 98 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~v 98 (447)
..+|+--+.|++|.+|.+.++++|||++
T Consensus 71 AP~VvAKG~g~~A~~I~e~A~e~gVPi~ 98 (137)
T 3bzs_A 71 LPLVIETGKDAKALQIIKLAELYDIPVI 98 (137)
T ss_dssp SCEEEEEEETHHHHHHHHHHHHHTCCEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHcCCCEE
Confidence 5688888899999999999999999965
No 117
>1ysp_A Transcriptional regulator KDGR; ICLR, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Escherichia coli}
Probab=35.12 E-value=2e+02 Score=24.18 Aligned_cols=79 Identities=22% Similarity=0.301 Sum_probs=51.3
Q ss_pred ECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCH-
Q 013241 150 AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTP- 228 (447)
Q Consensus 150 v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~- 228 (447)
+.+.++|.+.++++++.. -.+-.+|+.+|-.-+.+-++ |..|.++..-. + ..|...+++
T Consensus 93 ~~~~~~l~~~l~~iR~~G------ya~~~~e~~~g~~~vAaPv~-~~~g~~~~als--v-----------~~p~~r~~~~ 152 (181)
T 1ysp_A 93 ITSTEALLPVLDQVREQG------YGEDNEEQEEGLRCIAVPVF-DRFGVVIAGLS--I-----------SFPTLRFSEE 152 (181)
T ss_dssp CCSHHHHHHHHHHHHHHT------CEEEESSSSTTBEEEEEEEE-CTTSCEEEEEE--E-----------CCBSSSCCHH
T ss_pred CCCHHHHHHHHHHHHHhC------CeEEccccccCCEEEEEEEE-CCCCCEEEEEE--E-----------EeehHhcCHH
Confidence 457889999998887763 44667889999666777766 44566654311 1 124444554
Q ss_pred ---HHHHHHHHHHHHHHHHcCCc
Q 013241 229 ---ELRKAMGDAAVAAAASIGYI 248 (447)
Q Consensus 229 ---~~~~~l~~~a~~i~~alg~~ 248 (447)
++.+.+.+.+.++-+.+||.
T Consensus 153 ~~~~~~~~l~~aA~~is~~lg~~ 175 (181)
T 1ysp_A 153 RLQEYVAMLHTAARKISAQMGYH 175 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 45566777788888888875
No 118
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=34.66 E-value=1.3e+02 Score=29.15 Aligned_cols=84 Identities=15% Similarity=0.243 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH----------HHHHHHhhhhCCcEEEEeCCCCCCcCeEEE
Q 013241 81 EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------EEAVKLADELGFPVMIKATAGGGGRGMRLA 150 (447)
Q Consensus 81 eia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v 150 (447)
|-=..+.+.|++.|++.+..-. |..+.. .+.+.++.+ -++++.+.+.|-|+++| +|+.
T Consensus 91 e~~~~L~~~~~~~Gi~~~st~~--d~~svd-~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPviLs-------tGma-- 158 (349)
T 2wqp_A 91 EDEIKLKEYVESKGMIFISTLF--SRAAAL-RLQRMDIPAYKIGSGECNNYPLIKLVASFGKPIILS-------TGMN-- 158 (349)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEC--SHHHHH-HHHHHTCSCEEECGGGTTCHHHHHHHHTTCSCEEEE-------CTTC--
T ss_pred HHHHHHHHHHHHhCCeEEEeeC--CHHHHH-HHHhcCCCEEEECcccccCHHHHHHHHhcCCeEEEE-------CCCC--
Confidence 3345778999999998765433 332222 122222222 56677777789999997 5662
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccC
Q 013241 151 KEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ 183 (447)
Q Consensus 151 ~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~ 183 (447)
+.+|+..+++.+... |+ ++++-+-+.
T Consensus 159 -t~~Ei~~Ave~i~~~-----G~-~iiLlhc~s 184 (349)
T 2wqp_A 159 -SIESIKKSVEIIREA-----GV-PYALLHCTN 184 (349)
T ss_dssp -CHHHHHHHHHHHHHH-----TC-CEEEEECCC
T ss_pred -CHHHHHHHHHHHHHc-----CC-CEEEEeccC
Confidence 889999998877654 33 555555443
No 119
>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*
Probab=34.35 E-value=2.4e+02 Score=25.67 Aligned_cols=35 Identities=11% Similarity=0.006 Sum_probs=26.9
Q ss_pred cEEEEecC-cHHHHHHHHHHHHcCCCeeEEEeccCh
Q 013241 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (447)
Q Consensus 72 ~kvLianr-geia~ri~r~~~~lGi~~vav~~~~dk 106 (447)
|.+||.+. +=|+..+++.+-+.|..++......++
T Consensus 8 KvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~ 43 (258)
T 4gkb_A 8 KVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPD 43 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCccc
Confidence 67888873 468899999999999987776655444
No 120
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=34.17 E-value=76 Score=28.49 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=35.7
Q ss_pred cEEEEe--cCcHHHHHHHHHHHH-cCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEE
Q 013241 72 EKILVA--NRGEIAVRVIRTAHE-MGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMI 136 (447)
Q Consensus 72 ~kvLia--nrgeia~ri~r~~~~-lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVv 136 (447)
.||.|. ++|.....+++++++ ++..++.+.+..+. ....+.+++.|.|++.
T Consensus 6 ~riavl~SG~Gsnl~all~~~~~~~~~eI~~Vis~~~~--------------a~~~~~A~~~gIp~~~ 59 (215)
T 3tqr_A 6 LPIVVLISGNGTNLQAIIGAIQKGLAIEIRAVISNRAD--------------AYGLKRAQQADIPTHI 59 (215)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHTTCSEEEEEEEESCTT--------------CHHHHHHHHTTCCEEE
T ss_pred cEEEEEEeCCcHHHHHHHHHHHcCCCCEEEEEEeCCcc--------------hHHHHHHHHcCCCEEE
Confidence 455444 899999999999876 34556666665443 2345678889999875
No 121
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=34.09 E-value=2.1e+02 Score=26.65 Aligned_cols=34 Identities=9% Similarity=-0.012 Sum_probs=27.4
Q ss_pred CCcEEEEec-CcHHHHHHHHHHHHcCCCeeEEEec
Q 013241 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (447)
Q Consensus 70 ~~~kvLian-rgeia~ri~r~~~~lGi~~vav~~~ 103 (447)
.-+++||.+ .+-|+..+++.+.+.|..++.+...
T Consensus 45 ~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~ 79 (317)
T 3oec_A 45 QGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLC 79 (317)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecc
Confidence 347889988 4689999999999999988776544
No 122
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein trans type III secretion system, membrane; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=33.80 E-value=29 Score=29.34 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=25.3
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCee
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCV 98 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~v 98 (447)
..+|+--+.|++|.+|.+.++++|||++
T Consensus 70 AP~VvAKG~g~~A~~I~e~A~e~gVPi~ 97 (144)
T 2jlj_A 70 LPLVTFKYTDAQVQTVRKIAEEEGVPIL 97 (144)
T ss_dssp SCEEEEEEETHHHHHHHHHHHHHTCCEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHcCCCEE
Confidence 5688888899999999999999999965
No 123
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=33.49 E-value=37 Score=27.71 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=34.0
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhC
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELG 131 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig 131 (447)
-+||+|.+.|.++..+++.+.+.|.. +.++ .++. +.+.+++++++
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~-~r~~--------------~~~~~~a~~~~ 65 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYK-VTVA-GRNI--------------DHVRAFAEKYE 65 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCE-EEEE-ESCH--------------HHHHHHHHHHT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCE-EEEE-cCCH--------------HHHHHHHHHhC
Confidence 47999999999999999999999987 4443 3444 44555666665
No 124
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=33.47 E-value=2.7e+02 Score=25.17 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=26.2
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEEEe
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav~~ 102 (447)
-+++||.+ .+-|+..+++.+.+.|..++.+..
T Consensus 32 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r 64 (276)
T 3r1i_A 32 GKRALITGASTGIGKKVALAYAEAGAQVAVAAR 64 (276)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 47889988 468999999999999998766554
No 125
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=33.22 E-value=1.3e+02 Score=28.62 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=45.0
Q ss_pred cEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEe
Q 013241 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKA 138 (447)
Q Consensus 72 ~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP 138 (447)
-||+.++-.+.|+...+++.+.|..++.+++..|+..-.. ..+....+.+.+.+.|.|++ .|
T Consensus 5 mrIvf~Gtp~fa~~~L~~L~~~~~~v~~Vvt~pd~~~gRg----~~l~~~pv~~~A~~~gIpv~-~~ 66 (317)
T 3rfo_A 5 IKVVFMGTPDFSVPVLRRLIEDGYDVIGVVTQPDRPVGRK----KVLTPTPVKVEAEKHGIPVL-QP 66 (317)
T ss_dssp SEEEEECCSTTHHHHHHHHHHTTCEEEEEECCCCCEETTT----TEECCCHHHHHHHHTTCCEE-CC
T ss_pred eEEEEEeCCHHHHHHHHHHHHCCCcEEEEEeCCCcccCCC----cccCCCHHHHHHHHcCCCEE-cc
Confidence 5899999999999999999999999999998877632110 00111456777788888864 44
No 126
>3fov_A UPF0102 protein RPA0323; structural genomics, APC7380, PSI-2, protein structure initi midwest center for structural genomics, MCSG; 1.88A {Rhodopseudomonas palustris}
Probab=33.04 E-value=48 Score=27.60 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcCCc--------cEeEEEEEEecCCCEEEEEEeccCCC
Q 013241 233 AMGDAAVAAAASIGYI--------GVGTVEFLLDERGSFYFMEMNTRIQV 274 (447)
Q Consensus 233 ~l~~~a~~i~~alg~~--------G~~~vEf~~d~~G~~~~iEiNpR~~g 274 (447)
.-++.|.+.++.-||. ..+.+|++..+++.++|+||-+|-+.
T Consensus 25 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~LVFVEVKtR~~~ 74 (134)
T 3fov_A 25 SAEASAADYLERQGYRILARRFKTRCGEIDLVAQRDALVAFVEVKARGNV 74 (134)
T ss_dssp CHHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEEETTEEEEEEEEEC---
T ss_pred HHHHHHHHHHHHCCCEEEeccccCCCCcEEEEEEECCEEEEEEEEEccCC
Confidence 3456777888888764 45789999887778999999999763
No 127
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=32.21 E-value=52 Score=30.82 Aligned_cols=63 Identities=13% Similarity=0.190 Sum_probs=38.2
Q ss_pred CcEEEEecCcHHHHHHHHHHHHc-C-CCeeEEEeccChhhHHHHHhcccc--C-------HHHHHHHhhhhCCcEEE
Q 013241 71 QEKILVANRGEIAVRVIRTAHEM-G-IPCVAVYSTIDKDALHVKLADESV--C-------IEEAVKLADELGFPVMI 136 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~l-G-i~~vav~~~~dk~~~~~~lad~~v--~-------i~e~~~~~~~ig~PvVv 136 (447)
..||||+++|.. ..+++.+++. | +.++.+....+ ......+|+.+ + ++.+.+++++.+.-+|+
T Consensus 4 ~~~Ili~g~g~~-~~l~~~l~~~~~~~~v~~~d~~~~--~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~d~vi 77 (331)
T 2pn1_A 4 KPHLLITSAGRR-AKLVEYFVKEFKTGRVSTADCSPL--ASALYMADQHYIVPKIDEVEYIDHLLTLCQDEGVTALL 77 (331)
T ss_dssp CCEEEEESCTTC-HHHHHHHHHHCCSSEEEEEESCTT--CGGGGGSSSEEECCCTTSTTHHHHHHHHHHHHTCCEEE
T ss_pred cceEEEecCCch-HHHHHHHHHhcCCCEEEEEeCCCc--chhHHhhhceecCCCCCChhHHHHHHHHHHHcCCCEEE
Confidence 368999998865 5677877775 6 66666644333 33334455432 1 25566666666666665
No 128
>2yzt_A Putative uncharacterized protein TTHA1756; uncharacterized conserved protein, structural genomics, UNKN function, NPPSFA; 1.80A {Thermus thermophilus}
Probab=31.51 E-value=34 Score=24.52 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=18.6
Q ss_pred EEEcCCHHHHHHHHHHhhhc
Q 013241 369 IVWAPTREKAIERMKRALND 388 (447)
Q Consensus 369 i~~g~~~~eA~~~~~~al~~ 388 (447)
++.|+|.+||++.++.|+..
T Consensus 27 ~t~G~T~eEa~~~~~eAi~~ 46 (67)
T 2yzt_A 27 HTQAQSFEELLRRLQEAIAV 46 (67)
T ss_dssp EEEESSHHHHHHHHHHHHHH
T ss_pred ceeeCCHHHHHHHHHHHHHH
Confidence 79999999999999999874
No 129
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=31.14 E-value=2.3e+02 Score=25.73 Aligned_cols=79 Identities=13% Similarity=0.184 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCH--
Q 013241 151 KEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTP-- 228 (447)
Q Consensus 151 ~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~-- 228 (447)
.+.++|.+.++++++.. -.+-.+|+.+|-.-+.+-++ |..|.++..-. + ..|...+++
T Consensus 168 ~~~~~l~~~l~~iR~~G------ya~~~~e~~~g~~~iAaPI~-~~~g~~~aals--v-----------s~p~~r~~~~~ 227 (260)
T 3r4k_A 168 TDPAAIRAEIAEVRRTG------LAQSIGGFEAEVHSHAVPIF-GPDRAVLGALA--V-----------AAPTSRMTPDQ 227 (260)
T ss_dssp CCHHHHHHHHHHHHHHS------CEEEESSSSTTEEEEEEEEE-CTTSCEEEEEE--E-----------EEEGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHCC------eEEeCCccccCceEEEEEEE-CCCCCEEEEEE--E-----------EEehHhcCHHH
Confidence 46777777777776652 44667889998556666666 55666654211 1 123333443
Q ss_pred --HHHHHHHHHHHHHHHHcCCcc
Q 013241 229 --ELRKAMGDAAVAAAASIGYIG 249 (447)
Q Consensus 229 --~~~~~l~~~a~~i~~alg~~G 249 (447)
++.+.+.+.+.++-+.+|+.+
T Consensus 228 ~~~~~~~l~~aA~~Is~~lg~~~ 250 (260)
T 3r4k_A 228 KRTIPPALRAAGLSLTERIGGAC 250 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC
Confidence 455678888888889999874
No 130
>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*
Probab=31.03 E-value=65 Score=28.46 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=30.0
Q ss_pred cccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEe
Q 013241 67 VTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 67 ~~~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~ 102 (447)
....++|++|.+.|..+..+++.+++.|...+.+..
T Consensus 8 ~~~~~k~v~IiGAGg~g~~v~~~l~~~~~~~vgfiD 43 (220)
T 4ea9_A 8 ASLAIGGVVIIGGGGHAKVVIESLRACGETVAAIVD 43 (220)
T ss_dssp CCCCSSCEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred cccCCCCEEEEcCCHHHHHHHHHHHhCCCEEEEEEe
Confidence 344578999999999999999999999988776654
No 131
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=31.00 E-value=29 Score=32.54 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=31.7
Q ss_pred CccccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEec
Q 013241 65 LKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (447)
Q Consensus 65 ~~~~~~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~ 103 (447)
+.++..-++|||++.|+.|.+.++.+.+.|..+..+...
T Consensus 7 l~~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~ 45 (274)
T 1kyq_A 7 LAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (274)
T ss_dssp EEECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred EEEEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 445555689999999999999999999999876655543
No 132
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=30.52 E-value=42 Score=34.09 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=24.0
Q ss_pred cEeEEEEEEecCCCEEEEEEeccCCCc
Q 013241 249 GVGTVEFLLDERGSFYFMEMNTRIQVE 275 (447)
Q Consensus 249 G~~~vEf~~d~~G~~~~iEiNpR~~g~ 275 (447)
-++.+|++.+.||+++|+|-|.|-..+
T Consensus 143 ~i~~~Dl~r~~dG~~~vlEdn~~~PSG 169 (474)
T 3n6x_A 143 HIAGVDLVRTGENDFYVLEDNLRTPSG 169 (474)
T ss_dssp SEEEEEEEECSSSCEEEEEEECSSCCC
T ss_pred EEEEEEEEECCCCCEEEEEeCCCCCch
Confidence 488999999999999999999997654
No 133
>3b1s_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=36.51 E-value=11 Score=29.11 Aligned_cols=29 Identities=24% Similarity=0.503 Sum_probs=24.9
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeE
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVA 99 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~va 99 (447)
..+|+--+.|++|.+|.+.++++|+|++.
T Consensus 17 AP~VvAKG~~~~A~~I~e~A~e~~VPi~e 45 (87)
T 3b1s_B 17 APVVVAKGKGTIAQKIVEIAENYSIPVVR 45 (87)
Confidence 45777778999999999999999999753
No 134
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=30.14 E-value=1.9e+02 Score=25.76 Aligned_cols=50 Identities=24% Similarity=0.359 Sum_probs=35.3
Q ss_pred EEEecCcHHHHHHHHHHHHcCC--CeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEE
Q 013241 74 ILVANRGEIAVRVIRTAHEMGI--PCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIK 137 (447)
Q Consensus 74 vLianrgeia~ri~r~~~~lGi--~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvK 137 (447)
||+.++|.....+++++++-++ .++.+.+.... ....+.+++.|.|+..=
T Consensus 12 vl~SG~gsnl~all~~~~~~~l~~~I~~Visn~~~--------------a~~l~~A~~~gIp~~~~ 63 (209)
T 4ds3_A 12 IFISGGGSNMEALIRAAQAPGFPAEIVAVFSDKAE--------------AGGLAKAEAAGIATQVF 63 (209)
T ss_dssp EEESSCCHHHHHHHHHHTSTTCSEEEEEEEESCTT--------------CTHHHHHHHTTCCEEEC
T ss_pred EEEECCcHHHHHHHHHHHcCCCCcEEEEEEECCcc--------------cHHHHHHHHcCCCEEEe
Confidence 5677899999999999977555 45566554322 22356788899998763
No 135
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=30.06 E-value=65 Score=31.76 Aligned_cols=86 Identities=15% Similarity=0.212 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH----------HHHHHHhhhhCCcEEEEeCCCCCCcCeEEE
Q 013241 81 EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------EEAVKLADELGFPVMIKATAGGGGRGMRLA 150 (447)
Q Consensus 81 eia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v 150 (447)
|-=..+.+.|++.|++.+.. .-|..+.. .+.+.++.+ -++++.+.+.|-|+|+| .||.
T Consensus 101 e~~~~L~~~~~~~Gi~~~st--pfD~~svd-~l~~~~vd~~KIgS~~~~N~pLL~~va~~gKPViLS-------tGma-- 168 (385)
T 1vli_A 101 EWILPLLDYCREKQVIFLST--VCDEGSAD-LLQSTSPSAFKIASYEINHLPLLKYVARLNRPMIFS-------TAGA-- 168 (385)
T ss_dssp GGHHHHHHHHHHTTCEEECB--CCSHHHHH-HHHTTCCSCEEECGGGTTCHHHHHHHHTTCSCEEEE-------CTTC--
T ss_pred HHHHHHHHHHHHcCCcEEEc--cCCHHHHH-HHHhcCCCEEEECcccccCHHHHHHHHhcCCeEEEE-------CCCC--
Confidence 34467889999999976543 33433332 233333333 56677777789999997 4662
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCC
Q 013241 151 KEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN 184 (447)
Q Consensus 151 ~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G 184 (447)
+.+|+..+++.+... |+.++++-+-+..
T Consensus 169 -Tl~Ei~~Ave~i~~~-----Gn~~iiLlhc~s~ 196 (385)
T 1vli_A 169 -EISDVHEAWRTIRAE-----GNNQIAIMHCVAK 196 (385)
T ss_dssp -CHHHHHHHHHHHHTT-----TCCCEEEEEECSS
T ss_pred -CHHHHHHHHHHHHHC-----CCCcEEEEeccCC
Confidence 889999888876543 3445655554443
No 136
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=29.52 E-value=1.6e+02 Score=27.74 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=38.4
Q ss_pred EEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEE
Q 013241 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVM 135 (447)
Q Consensus 73 kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvV 135 (447)
||++++.++.|....+++-+.|..++.+.+..|+..- .+ ....+.+.+++.|.|++
T Consensus 2 rivf~gt~~fa~~~L~~L~~~~~~i~~Vvt~~d~~~g--~~-----~~~~v~~~A~~~gIpv~ 57 (305)
T 2bln_A 2 KTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGE--KA-----FYGSVARLAAERGIPVY 57 (305)
T ss_dssp EEEEEECHHHHHHHHHHHHHTTCEEEEEECCCC-------------CCCCHHHHHHHHTCCEE
T ss_pred EEEEEEcCHHHHHHHHHHHHCCCcEEEEEcCCCCCCC--Cc-----CccHHHHHHHHcCCCEE
Confidence 7889999999999999998889998888887776321 00 00224556666677755
No 137
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=29.33 E-value=2.2e+02 Score=26.78 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=24.5
Q ss_pred cEEEEecCcHHHH-HHHHHHHHc-CCCeeEEEe
Q 013241 72 EKILVANRGEIAV-RVIRTAHEM-GIPCVAVYS 102 (447)
Q Consensus 72 ~kvLianrgeia~-ri~r~~~~l-Gi~~vav~~ 102 (447)
-||.|.+-|.++. ..++.++++ ++..+++..
T Consensus 26 ~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d 58 (330)
T 4ew6_A 26 INLAIVGVGKIVRDQHLPSIAKNANFKLVATAS 58 (330)
T ss_dssp EEEEEECCSHHHHHTHHHHHHHCTTEEEEEEEC
T ss_pred ceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEe
Confidence 4899999999998 688888886 666666654
No 138
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=29.29 E-value=1.9e+02 Score=26.89 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=42.0
Q ss_pred HHHHH-HHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH----------HHHHHHhhhhCCcEEEEeCCCCCCcCeEE
Q 013241 81 EIAVR-VIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------EEAVKLADELGFPVMIKATAGGGGRGMRL 149 (447)
Q Consensus 81 eia~r-i~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~ 149 (447)
+-..+ +.+.|+++|+++..-.. |..... .+++. +.+ .++++.+.+.+.||++|--..
T Consensus 88 ~~gl~~l~~~~~~~Gl~~~te~~--d~~~~~-~l~~~-vd~~kIgs~~~~n~~ll~~~a~~~kPV~lk~G~~-------- 155 (276)
T 1vs1_A 88 LEGLKLLRRAGDEAGLPVVTEVL--DPRHVE-TVSRY-ADMLQIGARNMQNFPLLREVGRSGKPVLLKRGFG-------- 155 (276)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECC--CGGGHH-HHHHH-CSEEEECGGGTTCHHHHHHHHHHTCCEEEECCTT--------
T ss_pred HHHHHHHHHHHHHcCCcEEEecC--CHHHHH-HHHHh-CCeEEECcccccCHHHHHHHHccCCeEEEcCCCC--------
Confidence 44443 34556778887664322 222221 12222 222 567777778899999995321
Q ss_pred ECCHHHHHHHHHHHHH
Q 013241 150 AKEPDEFVKLLQQAKS 165 (447)
Q Consensus 150 v~~~~el~~~~~~~~~ 165 (447)
-+.+|+..+++.+..
T Consensus 156 -~t~~ei~~Ave~i~~ 170 (276)
T 1vs1_A 156 -NTVEELLAAAEYILL 170 (276)
T ss_dssp -CCHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHH
Confidence 267899888887754
No 139
>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure INIT PSI, midwest center for structural genomics center, MCSG; 1.85A {Archaeoglobus fulgidus} SCOP: a.60.4.3 c.52.1.30
Probab=29.17 E-value=80 Score=28.05 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHcCCc-----------cEeEEEEEEecCCCEEEEEEeccC
Q 013241 232 KAMGDAAVAAAASIGYI-----------GVGTVEFLLDERGSFYFMEMNTRI 272 (447)
Q Consensus 232 ~~l~~~a~~i~~alg~~-----------G~~~vEf~~d~~G~~~~iEiNpR~ 272 (447)
.+.++.+.++++..||. |-..+|++..+++..+|+|+-.|-
T Consensus 18 ~~fE~~va~~L~~~Gy~i~~~v~v~~r~~dggIDIIA~k~~~~v~VEvK~r~ 69 (199)
T 1y88_A 18 YFQGHMVARLLEEHGFETKTNVIVQGNCVEQEIDVVAERDGERYMIECKFHN 69 (199)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEEEECSSSEEEEEEEEEETTEEEEEEECCCS
T ss_pred HHHHHHHHHHHHHCCCEEEEeecccCCCCCCcEEEEEEECCEEEEEEecccc
Confidence 46778899999999986 356899988888889999998774
No 140
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=29.01 E-value=3.3e+02 Score=24.79 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=26.5
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEEEec
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav~~~ 103 (447)
-+++||.+ .+-|+..+++.+.+.|..++.+...
T Consensus 49 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~ 82 (294)
T 3r3s_A 49 DRKALVTGGDSGIGRAAAIAYAREGADVAINYLP 82 (294)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCG
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 47899998 4689999999999999887655443
No 141
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}
Probab=28.96 E-value=3e+02 Score=24.32 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=23.7
Q ss_pred cEEEEec-CcHHHHHHHHHHHHcCCCeeEEEeccCh
Q 013241 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (447)
Q Consensus 72 ~kvLian-rgeia~ri~r~~~~lGi~~vav~~~~dk 106 (447)
+++||.+ .+-|+..+++.+.+.|-....+...++.
T Consensus 3 k~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~ 38 (254)
T 3kzv_A 3 KVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSE 38 (254)
T ss_dssp CEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCH
T ss_pred CEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCH
Confidence 6788888 4578999999988886433333334554
No 142
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=28.69 E-value=3.1e+02 Score=24.24 Aligned_cols=30 Identities=13% Similarity=0.137 Sum_probs=24.9
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEE
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAV 100 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav 100 (447)
-+++||.+ .+-++..+++.+.+.|..++.+
T Consensus 9 ~k~vlITGas~gIG~~~a~~l~~~G~~V~~~ 39 (261)
T 3n74_A 9 GKVALITGAGSGFGEGMAKRFAKGGAKVVIV 39 (261)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 47899998 4689999999999999876655
No 143
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=28.69 E-value=3e+02 Score=24.17 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=24.9
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEEE
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav~ 101 (447)
-+++||.+ .+-|+..+++.+.+.|..++...
T Consensus 4 ~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~ 35 (246)
T 3osu_A 4 TKSALVTGASRGIGRSIALQLAEEGYNVAVNY 35 (246)
T ss_dssp SCEEEETTCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 36788888 46899999999999998866543
No 144
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=28.64 E-value=1.9e+02 Score=27.35 Aligned_cols=62 Identities=26% Similarity=0.345 Sum_probs=42.7
Q ss_pred cEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEe
Q 013241 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKA 138 (447)
Q Consensus 72 ~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP 138 (447)
-||++++-++.|....+++.+.|..++.+.+..|+..-... .+....+.+.+.+.|.|++ .|
T Consensus 4 mrIvf~Gt~~fa~~~L~~L~~~~~~i~~Vvt~pd~p~grg~----~~~~~~v~~~A~~~gIpv~-~~ 65 (314)
T 1fmt_A 4 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGK----KLMPSPVKVLAEEKGLPVF-QP 65 (314)
T ss_dssp CEEEEEECSHHHHHHHHHHHHTTCEEEEEECCCCBC----------CBCCHHHHHHHHTTCCEE-CC
T ss_pred CEEEEEecCHHHHHHHHHHHHCCCcEEEEEeCCCCcccccc----ccCcCHHHHHHHHcCCcEE-ec
Confidence 37999999999999999998889988888887765321100 0000346677778888864 44
No 145
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=28.64 E-value=3.2e+02 Score=25.13 Aligned_cols=70 Identities=13% Similarity=0.098 Sum_probs=43.7
Q ss_pred cEEEEecC-cHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEEE
Q 013241 72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLA 150 (447)
Q Consensus 72 ~kvLianr-geia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v 150 (447)
|.+||.+. +=|+..+++.+.+.|..++... ++. +.+.+.+++++-.++.-+.+ +
T Consensus 30 KvalVTGas~GIG~aiA~~la~~Ga~V~i~~--r~~--------------~~l~~~~~~~g~~~~~~~~D---------v 84 (273)
T 4fgs_A 30 KIAVITGATSGIGLAAAKRFVAEGARVFITG--RRK--------------DVLDAAIAEIGGGAVGIQAD---------S 84 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEE--SCH--------------HHHHHHHHHHCTTCEEEECC---------T
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEE--CCH--------------HHHHHHHHHcCCCeEEEEec---------C
Confidence 56788773 3599999999999999876554 444 44455555654222111111 4
Q ss_pred CCHHHHHHHHHHHHHH
Q 013241 151 KEPDEFVKLLQQAKSE 166 (447)
Q Consensus 151 ~~~~el~~~~~~~~~~ 166 (447)
.+++++++.++++.++
T Consensus 85 ~~~~~v~~~~~~~~~~ 100 (273)
T 4fgs_A 85 ANLAELDRLYEKVKAE 100 (273)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5777887777766543
No 146
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=28.45 E-value=1.2e+02 Score=28.60 Aligned_cols=80 Identities=18% Similarity=0.329 Sum_probs=48.0
Q ss_pred HHHHHH-HHHHHHcCCCeeEEEeccChhhHHHHHhccccCH----------HHHHHHhhhhCCcEEEEeCCCCCCcCeEE
Q 013241 81 EIAVRV-IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------EEAVKLADELGFPVMIKATAGGGGRGMRL 149 (447)
Q Consensus 81 eia~ri-~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~ 149 (447)
+-++++ .+.|++.|+++..-.. |..... .+++. +.+ -++.+.+...+.||++|--..
T Consensus 77 ~~GL~~L~~~~~e~Glp~~Tev~--d~~~v~-~l~~~-vd~lqIgA~~~~n~~LLr~va~~gkPVilK~G~~-------- 144 (285)
T 3sz8_A 77 DEGLKIFAEVKARFGVPVITDVH--EAEQAA-PVAEI-ADVLQVPAFLARQTDLVVAIAKAGKPVNVKKPQF-------- 144 (285)
T ss_dssp HHHHHHHHHHHHHHCCCEEEECC--SGGGHH-HHHTT-CSEEEECGGGTTCHHHHHHHHHTSSCEEEECCTT--------
T ss_pred HHHHHHHHHHHHhcCCeEEEEeC--CHHHHH-HHHHh-CCEEEECccccCCHHHHHHHHccCCcEEEeCCCC--------
Confidence 455555 4456699999775433 332222 12222 322 556666778999999995321
Q ss_pred ECCHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 013241 150 AKEPDEFVKLLQQAKSEAAAAFGNDGVYL 178 (447)
Q Consensus 150 v~~~~el~~~~~~~~~~~~~~~~~~~~lv 178 (447)
-+.+|+..+++.+.+. |+.++++
T Consensus 145 -~t~~ei~~ave~i~~~-----Gn~~i~L 167 (285)
T 3sz8_A 145 -MSPTQLKHVVSKCGEV-----GNDRVML 167 (285)
T ss_dssp -SCGGGTHHHHHHHHHT-----TCCCEEE
T ss_pred -CCHHHHHHHHHHHHHc-----CCCcEEE
Confidence 3678888888776553 4555554
No 147
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=28.27 E-value=90 Score=29.61 Aligned_cols=36 Identities=22% Similarity=0.209 Sum_probs=29.5
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccCh
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk 106 (447)
-++|||.+.|-++.-.++.++.+|..++++....++
T Consensus 177 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~ 212 (348)
T 3two_A 177 GTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHK 212 (348)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTT
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence 479999999999999999999999976666544444
No 148
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=28.06 E-value=76 Score=29.38 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=28.9
Q ss_pred CCcEEEEecC-cHHHHHHHHHHHHcCCCeeEEEecc
Q 013241 70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (447)
Q Consensus 70 ~~~kvLianr-geia~ri~r~~~~lGi~~vav~~~~ 104 (447)
|+++|||.+. |-++..+++.+.+.|.++..+....
T Consensus 10 m~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 45 (318)
T 2r6j_A 10 MKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPN 45 (318)
T ss_dssp CCCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTT
T ss_pred CCCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCC
Confidence 4578999994 9999999999999998877665443
No 149
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=27.99 E-value=2.8e+02 Score=24.78 Aligned_cols=78 Identities=15% Similarity=0.180 Sum_probs=46.7
Q ss_pred ECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCH-
Q 013241 150 AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTP- 228 (447)
Q Consensus 150 v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~- 228 (447)
+.+.++|.+.+++++... -.+-.+|+.+|-.-+.+-++ |..|.++..-. + ..|...+++
T Consensus 168 ~~~~~~l~~~l~~iR~~G------ya~~~~e~~~g~~~iAaPI~-~~~g~~~aals--v-----------~~p~~r~~~~ 227 (249)
T 1mkm_A 168 ITNPRVLKRELEKIRKRG------YAVDNEENEIGIMCVGVPIF-DHNGYPVAGVS--I-----------SGVARKFTEE 227 (249)
T ss_dssp CCCHHHHHHHHHHHHHHS------SEEEESSSSTTEEEEEEEEE-CTTSCEEEEEE--E-----------EEEGGGCCHH
T ss_pred CCCHHHHHHHHHHHHHhC------CcccccccccCCEEEEEEEE-CCCCCEEEEEE--E-----------EEEhHhcCHH
Confidence 356777887777777652 34567889998556666665 55666654311 1 123333444
Q ss_pred ---HHHHHHHHHHHHHHHHcCC
Q 013241 229 ---ELRKAMGDAAVAAAASIGY 247 (447)
Q Consensus 229 ---~~~~~l~~~a~~i~~alg~ 247 (447)
++.+.+.+.+.++-+.+||
T Consensus 228 ~~~~~~~~l~~aa~~is~~lg~ 249 (249)
T 1mkm_A 228 KIEEYSDVLKEKAEEISRKLGY 249 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCc
Confidence 4455666777777777764
No 150
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=27.93 E-value=53 Score=33.11 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=36.0
Q ss_pred EEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEE
Q 013241 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMI 136 (447)
Q Consensus 73 kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVv 136 (447)
||+|++.|..+..+++.+.+.|..++.+. .|. +.+....++++++++.
T Consensus 5 ~iiI~G~G~vG~~la~~L~~~~~~v~vId--~d~--------------~~~~~~~~~~~~~~i~ 52 (461)
T 4g65_A 5 KIIILGAGQVGGTLAENLVGENNDITIVD--KDG--------------DRLRELQDKYDLRVVN 52 (461)
T ss_dssp EEEEECCSHHHHHHHHHTCSTTEEEEEEE--SCH--------------HHHHHHHHHSSCEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEE--CCH--------------HHHHHHHHhcCcEEEE
Confidence 69999999999999999999998877664 454 3444455566766553
No 151
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=27.90 E-value=1.2e+02 Score=28.51 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=28.0
Q ss_pred CcEEEEecC-cHHHHHHHHHHHHcCCCeeEEEecc
Q 013241 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI 104 (447)
Q Consensus 71 ~~kvLianr-geia~ri~r~~~~lGi~~vav~~~~ 104 (447)
.++|||.+. |.++..+++.+.+.|.++..+....
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 44 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPG 44 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence 358999996 9999999999999998877665543
No 152
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=27.79 E-value=3.3e+02 Score=24.33 Aligned_cols=32 Identities=19% Similarity=0.375 Sum_probs=25.8
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEEEe
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav~~ 102 (447)
-+++||.+ .+-++..+++.+.+.|..++.+..
T Consensus 29 ~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r 61 (271)
T 4iin_A 29 GKNVLITGASKGIGAEIAKTLASMGLKVWINYR 61 (271)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 46899988 468999999999999998665543
No 153
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=27.78 E-value=3.3e+02 Score=24.27 Aligned_cols=29 Identities=17% Similarity=0.068 Sum_probs=23.9
Q ss_pred cEEEEec-CcHHHHHHHHHHHHcCCCeeEE
Q 013241 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAV 100 (447)
Q Consensus 72 ~kvLian-rgeia~ri~r~~~~lGi~~vav 100 (447)
+++||.+ .+-|+..+++.+.+.|..++..
T Consensus 5 k~vlVTGas~gIG~aia~~l~~~G~~vv~~ 34 (258)
T 3oid_A 5 KCALVTGSSRGVGKAAAIRLAENGYNIVIN 34 (258)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEEEE
Confidence 6788888 4689999999999999876653
No 154
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=27.76 E-value=3.3e+02 Score=24.34 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=25.0
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEEE
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav~ 101 (447)
-+++||.+ .+-|+..+++.+.+.|..++...
T Consensus 18 ~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~ 49 (270)
T 3is3_A 18 GKVALVTGSGRGIGAAVAVHLGRLGAKVVVNY 49 (270)
T ss_dssp TCEEEESCTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence 47889988 45899999999999998766543
No 155
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=27.74 E-value=1.1e+02 Score=29.37 Aligned_cols=55 Identities=25% Similarity=0.274 Sum_probs=42.5
Q ss_pred cEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEE
Q 013241 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMI 136 (447)
Q Consensus 72 ~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVv 136 (447)
-||++++..+.++.+++++.+.|..++.+.+..|+..- . +.+.+.+.+.|.|++.
T Consensus 23 mrIvf~G~~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~~-------~---~~v~~~A~~~gIpv~~ 77 (329)
T 2bw0_A 23 MKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGK-------A---DPLGLEAEKDGVPVFK 77 (329)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCEEEEEEECCCCSSC-------C---CHHHHHHHHHTCCEEE
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCeEEEEEeCCCcCCC-------C---CHHHHHHHHcCCCEEe
Confidence 48999998899999999999999988888886665210 0 3455677888999765
No 156
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}
Probab=27.71 E-value=1.2e+02 Score=27.98 Aligned_cols=35 Identities=11% Similarity=0.160 Sum_probs=28.6
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccCh
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk 106 (447)
-+++||.+.|.++..++..+.+.|+..+.+. .++.
T Consensus 120 ~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~-~R~~ 154 (272)
T 3pwz_A 120 NRRVLLLGAGGAVRGALLPFLQAGPSELVIA-NRDM 154 (272)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTCCSEEEEE-CSCH
T ss_pred CCEEEEECccHHHHHHHHHHHHcCCCEEEEE-eCCH
Confidence 4799999999999999999999998666554 3444
No 157
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=27.61 E-value=50 Score=30.45 Aligned_cols=33 Identities=27% Similarity=0.267 Sum_probs=27.0
Q ss_pred CcEEEEecCcH---------HHHHHHHHHHHcCCCeeEEEec
Q 013241 71 QEKILVANRGE---------IAVRVIRTAHEMGIPCVAVYST 103 (447)
Q Consensus 71 ~~kvLianrge---------ia~ri~r~~~~lGi~~vav~~~ 103 (447)
.+||+|+..|. .+..++++++++|+.++.+...
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~ 43 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK 43 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecC
Confidence 46899998875 6788999999999998776544
No 158
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=27.27 E-value=1.3e+02 Score=28.59 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=27.8
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEe
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~ 102 (447)
-+++||++.|.++..++..+.++|+..+.+..
T Consensus 148 gk~~lVlGAGGaaraia~~L~~~G~~~v~v~n 179 (312)
T 3t4e_A 148 GKTMVLLGAGGAATAIGAQAAIEGIKEIKLFN 179 (312)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCCEEEEEE
Confidence 47999999999999999999999997665554
No 159
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Probab=26.86 E-value=95 Score=28.75 Aligned_cols=30 Identities=23% Similarity=0.459 Sum_probs=26.4
Q ss_pred cEEEEecCcHHHHHHHHHHHHcCCCeeEEE
Q 013241 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 72 ~kvLianrgeia~ri~r~~~~lGi~~vav~ 101 (447)
+++||++.|..|..++..+.++|+..+.++
T Consensus 120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~ 149 (271)
T 1npy_A 120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIY 149 (271)
T ss_dssp SCEEEECSSTTHHHHHHHHHHTTCCCEEEE
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEE
Confidence 689999999999999999999998655554
No 160
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=26.82 E-value=76 Score=27.58 Aligned_cols=34 Identities=15% Similarity=0.036 Sum_probs=27.9
Q ss_pred cCCcEEEEec-CcHHHHHHHHHHH-HcCCCeeEEEe
Q 013241 69 CRQEKILVAN-RGEIAVRVIRTAH-EMGIPCVAVYS 102 (447)
Q Consensus 69 ~~~~kvLian-rgeia~ri~r~~~-~lGi~~vav~~ 102 (447)
.|++++||.+ .|-++..+++.+. +.|..+..+..
T Consensus 3 ~mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r 38 (221)
T 3r6d_A 3 AMYXYITILGAAGQIAQXLTATLLTYTDMHITLYGR 38 (221)
T ss_dssp CSCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEES
T ss_pred ceEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEec
Confidence 4577899999 5899999999999 89997766543
No 161
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=26.74 E-value=84 Score=28.21 Aligned_cols=52 Identities=21% Similarity=0.262 Sum_probs=36.9
Q ss_pred CcEEEEe--cCcHHHHHHHHHHHH-cCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEE
Q 013241 71 QEKILVA--NRGEIAVRVIRTAHE-MGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIK 137 (447)
Q Consensus 71 ~~kvLia--nrgeia~ri~r~~~~-lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvK 137 (447)
+.||.|+ ++|.....++++++. ++..++.+.+..++ ...+.+++.|.|+..=
T Consensus 12 ~~ri~vl~SG~gsnl~all~~~~~~~~~eI~~Vis~~~a---------------~~~~~A~~~gIp~~~~ 66 (215)
T 3da8_A 12 PARLVVLASGTGSLLRSLLDAAVGDYPARVVAVGVDREC---------------RAAEIAAEASVPVFTV 66 (215)
T ss_dssp SEEEEEEESSCCHHHHHHHHHSSTTCSEEEEEEEESSCC---------------HHHHHHHHTTCCEEEC
T ss_pred CcEEEEEEeCChHHHHHHHHHHhccCCCeEEEEEeCCch---------------HHHHHHHHcCCCEEEe
Confidence 4577776 899999999988754 33456677666653 2466778889998653
No 162
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Probab=26.72 E-value=86 Score=23.46 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=21.3
Q ss_pred HHcCCccEeEEEEEEecCCCEEEEEE
Q 013241 243 ASIGYIGVGTVEFLLDERGSFYFMEM 268 (447)
Q Consensus 243 ~alg~~G~~~vEf~~d~~G~~~~iEi 268 (447)
+..|+.|...++|.++.+|++.=+++
T Consensus 19 ~~~~~~G~V~v~~~i~~~G~v~~~~v 44 (90)
T 1u07_A 19 QALRIEGQVKVKFDVTPDGRVDNVQI 44 (90)
T ss_dssp HHHTCCEEEEEEEEECTTSCEEEEEE
T ss_pred HHCCCceEEEEEEEECCCCCEEEEEE
Confidence 45688999999999999998765554
No 163
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=26.53 E-value=3.5e+02 Score=24.25 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=24.4
Q ss_pred cEEEEec-CcHHHHHHHHHHHHcCCCeeEEE
Q 013241 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 72 ~kvLian-rgeia~ri~r~~~~lGi~~vav~ 101 (447)
+++||.+ .+-|+..+++.+.+.|..++...
T Consensus 28 k~~lVTGas~GIG~aia~~la~~G~~Vv~~~ 58 (267)
T 3u5t_A 28 KVAIVTGASRGIGAAIAARLASDGFTVVINY 58 (267)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHHTCEEEEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEc
Confidence 6788888 46899999999999998876543
No 164
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=26.30 E-value=1.9e+02 Score=27.47 Aligned_cols=62 Identities=23% Similarity=0.240 Sum_probs=43.0
Q ss_pred cEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEe
Q 013241 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKA 138 (447)
Q Consensus 72 ~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP 138 (447)
-||+.++-.+.|+...+++.+.|..++.+++..|+..-.-. .+.-..+.+.+++.|.|++ .|
T Consensus 8 mrivf~Gt~~fa~~~L~~L~~~~~~v~~Vvt~pd~p~grg~----~~~~~~v~~~A~~~gIpv~-~~ 69 (318)
T 3q0i_A 8 LRIVFAGTPDFAARHLAALLSSEHEIIAVYTQPERPAGRGK----KLTASPVKTLALEHNVPVY-QP 69 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHTSSSEEEEEECCCC-------------CCCHHHHHHHHTTCCEE-CC
T ss_pred CEEEEEecCHHHHHHHHHHHHCCCcEEEEEcCCCCcccccc----cCCCCHHHHHHHHcCCCEE-cc
Confidence 38999999999999999999999999999988776332100 0001456677888888864 45
No 165
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Probab=26.12 E-value=1e+02 Score=29.32 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=34.1
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCC-eeEEEeccChhhHHHHHhcc
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLADE 116 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~-~vav~~~~dk~~~~~~lad~ 116 (447)
-++|||.+.|-++.-.++.++.+|.. ++.+....++..+...++++
T Consensus 180 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~ 226 (363)
T 3m6i_A 180 GDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPE 226 (363)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchh
Confidence 37899999999999999999999997 66665555554444444433
No 166
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=26.06 E-value=3.7e+02 Score=24.37 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=25.6
Q ss_pred CCcEEEEec-CcHHHHHHHHHHHHcCCCeeEEE
Q 013241 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 70 ~~~kvLian-rgeia~ri~r~~~~lGi~~vav~ 101 (447)
.-+++||.+ .+-|+..+++.+.+.|..++.+.
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~ 59 (283)
T 3v8b_A 27 PSPVALITGAGSGIGRATALALAADGVTVGALG 59 (283)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 346889988 46899999999999998766553
No 167
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=26.06 E-value=3.6e+02 Score=24.23 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=25.1
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEEE
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav~ 101 (447)
-+++||.+ .+-|+..+++.+.+.|..++.+.
T Consensus 31 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~ 62 (271)
T 3v2g_A 31 GKTAFVTGGSRGIGAAIAKRLALEGAAVALTY 62 (271)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 36889988 46899999999999998766543
No 168
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=25.91 E-value=1.8e+02 Score=27.53 Aligned_cols=61 Identities=21% Similarity=0.339 Sum_probs=42.2
Q ss_pred EEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHH-HHHhccccCHHHHHHHhhhhCCcEEEEeC
Q 013241 73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLADESVCIEEAVKLADELGFPVMIKAT 139 (447)
Q Consensus 73 kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~-~~lad~~v~i~e~~~~~~~ig~PvVvKP~ 139 (447)
||+.++-.+.|+...+++.+.|..++.+++..|+..-. ..+.. ..+.+.+.+.|.|++ .|.
T Consensus 4 rivf~Gtp~fa~~~L~~L~~~~~~v~~Vvt~pd~~~grg~~l~~-----~~v~~~A~~~gIpv~-~~~ 65 (314)
T 3tqq_A 4 KIVFAGTPQFAVPTLRALIDSSHRVLAVYTQPDRPSGRGQKIME-----SPVKEIARQNEIPII-QPF 65 (314)
T ss_dssp EEEEEECSGGGHHHHHHHHHSSSEEEEEECCCC----------C-----CHHHHHHHHTTCCEE-CCS
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCCCccccCCccCC-----CHHHHHHHHcCCCEE-Ccc
Confidence 89999999999999999999999999999877764211 01111 456677778888853 453
No 169
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=25.56 E-value=93 Score=29.93 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=29.3
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCC-CeeEEEeccCh
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDK 106 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi-~~vav~~~~dk 106 (447)
-++|||.+.|-++.-.++.++.+|. .++++....++
T Consensus 194 g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~ 230 (378)
T 3uko_A 194 GSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKK 230 (378)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence 3789999999999999999999999 56666544444
No 170
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=25.51 E-value=1.9e+02 Score=28.30 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=26.4
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEE
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAV 100 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav 100 (447)
-.||+|.+.|.++..+++.++.+|..+..+
T Consensus 184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~ 213 (381)
T 3p2y_A 184 PASALVLGVGVAGLQALATAKRLGAKTTGY 213 (381)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHHTCEEEEE
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCEEEEE
Confidence 479999999999999999999999865544
No 171
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=25.41 E-value=3.7e+02 Score=24.14 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=24.6
Q ss_pred cEEEEec-CcHHHHHHHHHHHHcCCCeeEEE
Q 013241 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 72 ~kvLian-rgeia~ri~r~~~~lGi~~vav~ 101 (447)
+++||.+ .+-|+..+++.+.+.|..++.+.
T Consensus 5 k~~lVTGas~GIG~aia~~la~~G~~V~~~~ 35 (264)
T 3tfo_A 5 KVILITGASGGIGEGIARELGVAGAKILLGA 35 (264)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEE
Confidence 6788888 46799999999999998866553
No 172
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=25.29 E-value=3.7e+02 Score=24.08 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=25.5
Q ss_pred CCcEEEEec-CcHHHHHHHHHHHHcCCCeeEEE
Q 013241 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 70 ~~~kvLian-rgeia~ri~r~~~~lGi~~vav~ 101 (447)
.-+++||.+ .+-|+..+++.+.+.|..++...
T Consensus 27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~ 59 (269)
T 4dmm_A 27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNY 59 (269)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 347889988 46899999999999998766543
No 173
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=25.13 E-value=85 Score=29.85 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=28.8
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCC-CeeEEEeccCh
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDK 106 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi-~~vav~~~~dk 106 (447)
-++|||.+.|-++.-.++.++.+|. .++++....++
T Consensus 167 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~ 203 (352)
T 3fpc_A 167 GDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHC 203 (352)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHH
Confidence 4789999999999999999999998 56665444333
No 174
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=25.11 E-value=3.7e+02 Score=24.18 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=24.7
Q ss_pred cEEEEec-CcHHHHHHHHHHHHcCCCeeEEE
Q 013241 72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 72 ~kvLian-rgeia~ri~r~~~~lGi~~vav~ 101 (447)
+++||.+ .+-|+..+++.+.+.|..++.+.
T Consensus 25 k~~lVTGas~GIG~aia~~la~~G~~V~~~~ 55 (279)
T 3sju_A 25 QTAFVTGVSSGIGLAVARTLAARGIAVYGCA 55 (279)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 6789988 46899999999999998866553
No 175
>2o99_A Acetate operon repressor; ICLR, DNA binding protein; HET: MSE; 1.70A {Escherichia coli} SCOP: d.110.2.2 PDB: 2o9a_A 1td5_A
Probab=25.07 E-value=2.6e+02 Score=23.55 Aligned_cols=79 Identities=16% Similarity=0.102 Sum_probs=49.5
Q ss_pred ECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCC--
Q 013241 150 AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALT-- 227 (447)
Q Consensus 150 v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~-- 227 (447)
+.+.++|.+.+++++... -.+-.+|+.+|-.-+.+-++ |..|.++..-. ++ .|...++
T Consensus 97 ~~~~~~l~~~l~~iR~~G------ya~~~~e~~~gv~~iAaPv~-~~~g~~~aals--v~-----------~p~~r~~~~ 156 (182)
T 2o99_A 97 LVSPVHLKEDLAQTRKRG------YSFDDEEHALGLRCLAACIF-DEHREPFAAIS--IS-----------GPISRITDD 156 (182)
T ss_dssp CCSHHHHHHHHHHHHHHT------SEEEESSSSTTEEEEEEEEE-CTTSCEEEEEE--EE-----------EETTTSCGG
T ss_pred CCCHHHHHHHHHHHHHhC------CEEeccccccCCEEEEEEEE-CCCCCEEEEEE--EE-----------eehHhCCHH
Confidence 457889998888887763 34667889998556777666 55666654211 11 1322233
Q ss_pred --HHHHHHHHHHHHHHHHHcCCc
Q 013241 228 --PELRKAMGDAAVAAAASIGYI 248 (447)
Q Consensus 228 --~~~~~~l~~~a~~i~~alg~~ 248 (447)
+++...+.+.+.++-+.+|+.
T Consensus 157 ~~~~~~~~l~~aa~~is~~lg~~ 179 (182)
T 2o99_A 157 RVTEFGAMVIKAAKEVTLAYGGM 179 (182)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 345667777777777777653
No 176
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=24.90 E-value=1.2e+02 Score=26.93 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=36.4
Q ss_pred EEEecCcHHHHHHHHHHHHc--CCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEE
Q 013241 74 ILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMI 136 (447)
Q Consensus 74 vLianrgeia~ri~r~~~~l--Gi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVv 136 (447)
||+.++|.....+++++++- +..++.+.+..+. ....+.+++.|.|++.
T Consensus 5 vl~Sg~gsnl~ali~~~~~~~~~~~i~~Vis~~~~--------------~~~~~~A~~~gIp~~~ 55 (212)
T 1jkx_A 5 VLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKAD--------------AFGLERARQAGIATHT 55 (212)
T ss_dssp EEESSCCHHHHHHHHHHHTTSSSSEEEEEEESCTT--------------CHHHHHHHHTTCEEEE
T ss_pred EEEECCcHHHHHHHHHHHcCCCCceEEEEEeCCCc--------------hHHHHHHHHcCCcEEE
Confidence 56667888888899888776 4566777776555 3457788899999876
No 177
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=24.76 E-value=1.5e+02 Score=28.19 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=26.9
Q ss_pred CcEEEEecCcHHHHHHHHHHHHc-CCCeeEEEe
Q 013241 71 QEKILVANRGEIAVRVIRTAHEM-GIPCVAVYS 102 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~l-Gi~~vav~~ 102 (447)
-++|||.+.|-++.-.++.++.+ |..++++..
T Consensus 187 g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~ 219 (359)
T 1h2b_A 187 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV 219 (359)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 37999999999999999999999 987665543
No 178
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=24.76 E-value=3.8e+02 Score=24.05 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=25.1
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEEE
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav~ 101 (447)
-+++||.+ .|-|+..+++.+.+.|..++.+.
T Consensus 22 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~ 53 (277)
T 2rhc_B 22 SEVALVTGATSGIGLEIARRLGKEGLRVFVCA 53 (277)
T ss_dssp SCEEEEETCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 36889988 56899999999999998766553
No 179
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=24.57 E-value=1.4e+02 Score=27.76 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=28.5
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccCh
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk 106 (447)
-+++||.+.|-++..++..+.+.|+..+.+. .++.
T Consensus 127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~-~R~~ 161 (283)
T 3jyo_A 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVA-DLDT 161 (283)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCSEEEEE-CSSH
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEE-ECCH
Confidence 4799999999999999999999999755544 3444
No 180
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=24.30 E-value=1.5e+02 Score=28.15 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=27.5
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEe
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~ 102 (447)
-+++||.+.|.++..++..+.+.|...+.+..
T Consensus 154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~n 185 (315)
T 3tnl_A 154 GKKMTICGAGGAATAICIQAALDGVKEISIFN 185 (315)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CCEEEEECCChHHHHHHHHHHHCCCCEEEEEE
Confidence 47999999999999999999999996665543
No 181
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=24.29 E-value=3.6e+02 Score=23.57 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=25.2
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEEE
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav~ 101 (447)
.+++||.+ .+-|+..+++.+.+.|..++.+.
T Consensus 3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~ 34 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMG 34 (235)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
Confidence 47889988 46899999999999998766553
No 182
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=24.24 E-value=3.9e+02 Score=23.92 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=25.1
Q ss_pred CCcEEEEec-CcHHHHHHHHHHHHcCCCeeEE
Q 013241 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAV 100 (447)
Q Consensus 70 ~~~kvLian-rgeia~ri~r~~~~lGi~~vav 100 (447)
.-+++||.+ .+-|+..+++.+.+.|..++.+
T Consensus 29 ~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~ 60 (281)
T 3ppi_A 29 EGASAIVSGGAGGLGEATVRRLHADGLGVVIA 60 (281)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 347889988 4689999999999999876654
No 183
>3b0z_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.45A {Salmonella enterica subsp}
Probab=30.03 E-value=16 Score=29.62 Aligned_cols=29 Identities=24% Similarity=0.427 Sum_probs=24.9
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeE
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVA 99 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~va 99 (447)
..+|+--+.|++|.+|.+.++++|||++.
T Consensus 17 AP~VvAKG~~~~A~~I~e~A~e~gVPi~e 45 (114)
T 3b0z_B 17 APKVVAKGAGLIALRIREIGAEHRVPTLE 45 (114)
Confidence 45777778999999999999999999763
No 184
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=23.97 E-value=4e+02 Score=23.98 Aligned_cols=31 Identities=10% Similarity=0.073 Sum_probs=24.5
Q ss_pred CCcEEEEec-CcHHHHHHHHHHHHcCCCeeEE
Q 013241 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAV 100 (447)
Q Consensus 70 ~~~kvLian-rgeia~ri~r~~~~lGi~~vav 100 (447)
.-+++||.+ .+-|+..+++.+.+.|..++.+
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~ 58 (272)
T 4dyv_A 27 GKKIAIVTGAGSGVGRAVAVALAGAGYGVALA 58 (272)
T ss_dssp -CCEEEETTTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 346788887 4689999999999999876654
No 185
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Probab=23.87 E-value=1.2e+02 Score=28.83 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=29.5
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccCh
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk 106 (447)
-++|||.+.|-++.-+++.++.+|..++++....++
T Consensus 180 g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~ 215 (360)
T 1piw_A 180 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRK 215 (360)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 379999999999999999999999986666544444
No 186
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=23.74 E-value=3.7e+02 Score=23.52 Aligned_cols=31 Identities=16% Similarity=0.137 Sum_probs=25.5
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEEE
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav~ 101 (447)
-+++||.+ .+-++..+++.+.+.|..++.+.
T Consensus 9 ~k~vlITGas~giG~~~a~~l~~~G~~V~~~~ 40 (253)
T 3qiv_A 9 NKVGIVTGSGGGIGQAYAEALAREGAAVVVAD 40 (253)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEc
Confidence 47889988 46899999999999998866553
No 187
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=23.66 E-value=3.2e+02 Score=24.59 Aligned_cols=35 Identities=9% Similarity=-0.003 Sum_probs=26.9
Q ss_pred ccccCCcEEEEec-CcHHHHHHHHHHHHcCCCeeEE
Q 013241 66 KVTCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAV 100 (447)
Q Consensus 66 ~~~~~~~kvLian-rgeia~ri~r~~~~lGi~~vav 100 (447)
+.+..-+++||.+ .+-|+..+++.+.+.|..++.+
T Consensus 21 ~~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~ 56 (271)
T 4ibo_A 21 IFDLGGRTALVTGSSRGLGRAMAEGLAVAGARILIN 56 (271)
T ss_dssp GGCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 4444457899988 4689999999999999875543
No 188
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=23.65 E-value=3.7e+02 Score=23.54 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=25.6
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEEE
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav~ 101 (447)
-+++||.+ .+-++..+++.+.+.|..++.+.
T Consensus 13 ~k~vlITGas~giG~~ia~~l~~~G~~v~~~~ 44 (256)
T 3ezl_A 13 QRIAYVTGGMGGIGTSICQRLHKDGFRVVAGC 44 (256)
T ss_dssp CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 47889988 46899999999999998876654
No 189
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=23.56 E-value=1.1e+02 Score=27.31 Aligned_cols=52 Identities=17% Similarity=0.249 Sum_probs=38.3
Q ss_pred EEEecCcHHHHHHHHHHHHc--CCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEE-EeC
Q 013241 74 ILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMI-KAT 139 (447)
Q Consensus 74 vLianrgeia~ri~r~~~~l--Gi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVv-KP~ 139 (447)
||+.++|.....+++.++.- +..++.+.+..++ ....+.+++.|.|+++ .|.
T Consensus 5 Vl~SG~Gs~L~aLi~~~~~~~~~~~I~~Vvs~~~~--------------~~~~~~A~~~gIp~~~~~~~ 59 (209)
T 1meo_A 5 VLISGTGSNLQALIDSTREPNSSAQIDIVISNKAA--------------VAGLDKAERAGIPTRVINHK 59 (209)
T ss_dssp EEESSSCTTHHHHHHHHHSTTCSCEEEEEEESSTT--------------CHHHHHHHHTTCCEEECCGG
T ss_pred EEEECCchHHHHHHHHHhcCCCCcEEEEEEeCCCC--------------hHHHHHHHHcCCCEEEECcc
Confidence 56778888888888877654 6677888887776 4456778899999874 553
No 190
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=23.48 E-value=3.9e+02 Score=23.65 Aligned_cols=30 Identities=10% Similarity=0.079 Sum_probs=24.9
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEE
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAV 100 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav 100 (447)
-+++||.+ .+-|+..+++.+.+.|..++.+
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~ 38 (259)
T 4e6p_A 8 GKSALITGSARGIGRAFAEAYVREGATVAIA 38 (259)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 37889988 4689999999999999886654
No 191
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=23.44 E-value=4e+02 Score=23.81 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=26.5
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEEEec
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav~~~ 103 (447)
-+++||.+ .+-|+..+++.+.+.|..++.+...
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~ 44 (271)
T 3tzq_B 11 NKVAIITGACGGIGLETSRVLARAGARVVLADLP 44 (271)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47889988 4689999999999999887665443
No 192
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=23.42 E-value=73 Score=30.94 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=28.7
Q ss_pred cEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccC
Q 013241 72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID 105 (447)
Q Consensus 72 ~kvLianrgeia~ri~r~~~~lGi~~vav~~~~d 105 (447)
.+|++++.| .+..++++++++|+.++.+....+
T Consensus 19 ~~I~ilGs~-l~~~l~~aAk~lG~~vi~vd~~~~ 51 (361)
T 2r7k_A 19 ITIATLGSH-TSLHILKGAKLEGFSTVCITMKGR 51 (361)
T ss_dssp CEEEEESST-THHHHHHHHHHTTCCEEEEECTTS
T ss_pred CEEEEECcH-HHHHHHHHHHHCCCEEEEEECCCC
Confidence 359999998 999999999999999998876644
No 193
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=23.40 E-value=1.3e+02 Score=28.06 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=26.9
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEE
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~ 101 (447)
-+++||.+.|.++..++..+.+.|+..+.++
T Consensus 126 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~ 156 (281)
T 3o8q_A 126 GATILLIGAGGAARGVLKPLLDQQPASITVT 156 (281)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCEEEEECchHHHHHHHHHHHhcCCCeEEEE
Confidence 4799999999999999999999998666554
No 194
>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*
Probab=23.39 E-value=3.9e+02 Score=23.69 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=24.7
Q ss_pred ccCCcEEEEec-CcHHHHHHHHHHHHcCCCeeE
Q 013241 68 TCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVA 99 (447)
Q Consensus 68 ~~~~~kvLian-rgeia~ri~r~~~~lGi~~va 99 (447)
+.+-+++||.+ .+-|+..+++.+.+.|..++.
T Consensus 23 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i 55 (267)
T 4iiu_A 23 NAMSRSVLVTGASKGIGRAIARQLAADGFNIGV 55 (267)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence 34457899988 468999999999999987644
No 195
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=23.37 E-value=1.3e+02 Score=29.19 Aligned_cols=36 Identities=8% Similarity=0.224 Sum_probs=28.2
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCC-CeeEEEeccCh
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDK 106 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi-~~vav~~~~dk 106 (447)
-++|||.+.|-++.-.++.++.+|. .++++....++
T Consensus 214 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~ 250 (404)
T 3ip1_A 214 GDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVR 250 (404)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHH
Confidence 4789999999999999999999999 55555433333
No 196
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=23.33 E-value=2.8e+02 Score=24.01 Aligned_cols=31 Identities=10% Similarity=0.053 Sum_probs=25.0
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEEE
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav~ 101 (447)
++++||.+ .+-++..+++.+.+.|..++.+.
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~ 33 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGYALALGA 33 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 47889988 46799999999999998765543
No 197
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=23.31 E-value=3.9e+02 Score=23.67 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=25.6
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEEEe
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav~~ 102 (447)
-+++||.+ .+-|+..+++.+.+.|..++.++.
T Consensus 8 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~ 40 (259)
T 3edm_A 8 NRTIVVAGAGRDIGRACAIRFAQEGANVVLTYN 40 (259)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 36889988 457999999999999998765533
No 198
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=23.22 E-value=2e+02 Score=27.83 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=26.1
Q ss_pred HHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHH
Q 013241 121 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSE 166 (447)
Q Consensus 121 ~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~ 166 (447)
.++.+.+.+.+.|+++|--.. -+.+|+..+++.+...
T Consensus 203 ~~LL~~va~~~kPVilk~G~~---------~tl~ei~~Ave~i~~~ 239 (350)
T 1vr6_A 203 FRLLSKAGSYNKPVLLKRGFM---------NTIEEFLLSAEYIANS 239 (350)
T ss_dssp HHHHHHHHTTCSCEEEECCTT---------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCCcEEEcCCCC---------CCHHHHHHHHHHHHHC
Confidence 556666678899999985321 2678888888876543
No 199
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=23.16 E-value=2.8e+02 Score=25.26 Aligned_cols=34 Identities=9% Similarity=0.037 Sum_probs=25.2
Q ss_pred ccCCcEEEEecC-cHHHHHHHHHHHHcCCCeeEEE
Q 013241 68 TCRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 68 ~~~~~kvLianr-geia~ri~r~~~~lGi~~vav~ 101 (447)
+..=|.+||.+. +=|+..+++.+-+.|..++..+
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~ 40 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILND 40 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 333477888873 4689999999999998766543
No 200
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=22.92 E-value=84 Score=25.99 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=26.1
Q ss_pred HHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHH
Q 013241 123 AVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSE 166 (447)
Q Consensus 123 ~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~ 166 (447)
+...-+.+|.|++.+-..|.+|+|+..-..-+.+...+..+...
T Consensus 59 I~~LE~~lG~~Lf~R~~~G~~grg~~LT~~G~~ll~~a~~il~~ 102 (135)
T 2ijl_A 59 VDALNHMFRQPVICSQRGGKQGGGAALTVFGAELLERYRGMEER 102 (135)
T ss_dssp HHHHHHHBSSCSEEECCC------EEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCeeEEecCCCCCCCceeECHHHHHHHHHHHHHHHH
Confidence 34444578999999988888889998866666666655555444
No 201
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=22.85 E-value=4e+02 Score=23.56 Aligned_cols=31 Identities=26% Similarity=0.229 Sum_probs=25.8
Q ss_pred CcEEEEecC-c-HHHHHHHHHHHHcCCCeeEEE
Q 013241 71 QEKILVANR-G-EIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 71 ~~kvLianr-g-eia~ri~r~~~~lGi~~vav~ 101 (447)
-+++||.+. | -++..+++.+.+.|..++.+.
T Consensus 22 ~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~ 54 (266)
T 3o38_A 22 GKVVLVTAAAGTGIGSTTARRALLEGADVVISD 54 (266)
T ss_dssp TCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCCCchHHHHHHHHHHCCCEEEEec
Confidence 478999998 6 499999999999998866553
No 202
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=22.78 E-value=76 Score=29.70 Aligned_cols=32 Identities=25% Similarity=0.243 Sum_probs=26.6
Q ss_pred CCcEEEEecCcH---------HHHHHHHHHHHcCCCeeEEE
Q 013241 70 RQEKILVANRGE---------IAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 70 ~~~kvLianrge---------ia~ri~r~~~~lGi~~vav~ 101 (447)
|.+||+|+-+|. .+..+++++++.|+.++.+.
T Consensus 12 ~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~ 52 (317)
T 4eg0_A 12 RFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFD 52 (317)
T ss_dssp GGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred hcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEe
Confidence 567888888762 47899999999999988877
No 203
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=22.78 E-value=4.1e+02 Score=23.84 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=25.0
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEEE
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav~ 101 (447)
-+++||.+ .+-|+..+++.+.+.|..++.+.
T Consensus 27 ~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~ 58 (277)
T 4fc7_A 27 DKVAFITGGGSGIGFRIAEIFMRHGCHTVIAS 58 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 36889988 45799999999999998766553
No 204
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=22.77 E-value=91 Score=28.29 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=28.7
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEec
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST 103 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~ 103 (447)
++||||.+.|-++..+++.+.+.|..+..+...
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~ 35 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRS 35 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECT
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 468999999999999999999999988777544
No 205
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=22.72 E-value=1.1e+02 Score=29.35 Aligned_cols=32 Identities=19% Similarity=0.358 Sum_probs=27.5
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEe
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~ 102 (447)
-++|||.+.|-++.-.++.++.+|..++.+..
T Consensus 190 g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~ 221 (363)
T 3uog_A 190 GDRVVVQGTGGVALFGLQIAKATGAEVIVTSS 221 (363)
T ss_dssp TCEEEEESSBHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEec
Confidence 37999999999999999999999997766543
No 206
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=22.66 E-value=1.4e+02 Score=28.94 Aligned_cols=71 Identities=8% Similarity=0.117 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH----------HHHHHHhhhhCCcEEEEeCCCCCCcCeEEEC
Q 013241 82 IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------EEAVKLADELGFPVMIKATAGGGGRGMRLAK 151 (447)
Q Consensus 82 ia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~ 151 (447)
-=..+.+.|++.|++.+..-. |..+.. .+.+.++++ -.+++.+.+.|-|+|+| .|+ .
T Consensus 79 ~~~~L~~~~~~~Gi~~~st~f--D~~svd-~l~~~~v~~~KI~S~~~~N~pLL~~va~~gKPviLs-------tGm---s 145 (350)
T 3g8r_A 79 QMQKLVAEMKANGFKAICTPF--DEESVD-LIEAHGIEIIKIASCSFTDWPLLERIARSDKPVVAS-------TAG---A 145 (350)
T ss_dssp HHHHHHHHHHHTTCEEEEEEC--SHHHHH-HHHHTTCCEEEECSSSTTCHHHHHHHHTSCSCEEEE-------CTT---C
T ss_pred HHHHHHHHHHHcCCcEEeccC--CHHHHH-HHHHcCCCEEEECcccccCHHHHHHHHhhCCcEEEE-------CCC---C
Confidence 345678899999998765433 332222 223333333 56677777889999997 455 3
Q ss_pred CHHHHHHHHHHHHH
Q 013241 152 EPDEFVKLLQQAKS 165 (447)
Q Consensus 152 ~~~el~~~~~~~~~ 165 (447)
+.+|+..+++.+..
T Consensus 146 tl~Ei~~Ave~i~~ 159 (350)
T 3g8r_A 146 RREDIDKVVSFMLH 159 (350)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH
Confidence 88999988877653
No 207
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=22.63 E-value=4.2e+02 Score=23.93 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=25.0
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEEE
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav~ 101 (447)
-+++||.+ .+-|+..+++.+.+.|..++.+.
T Consensus 29 gk~vlVTGas~gIG~aia~~la~~G~~V~~~~ 60 (277)
T 3gvc_A 29 GKVAIVTGAGAGIGLAVARRLADEGCHVLCAD 60 (277)
T ss_dssp TCEEEETTTTSTHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 36888988 45799999999999998766553
No 208
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=22.59 E-value=1.2e+02 Score=28.69 Aligned_cols=80 Identities=21% Similarity=0.237 Sum_probs=47.2
Q ss_pred HHHHHHH-HHHHHcCCCeeEEEeccChhhHHHHHhccccCH----------HHHHHHhhhhCCcEEEEeCCCCCCcCeEE
Q 013241 81 EIAVRVI-RTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------EEAVKLADELGFPVMIKATAGGGGRGMRL 149 (447)
Q Consensus 81 eia~ri~-r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~ 149 (447)
+-++++. +.|++.|+++..- .-|..... .+++. +.+ -++.+.+...+.||++|--..
T Consensus 98 ~~GL~~L~~~~~e~GLpv~Te--v~D~~~v~-~l~~~-vd~lkIgA~~~~n~~LLr~va~~gkPVilK~Gms-------- 165 (298)
T 3fs2_A 98 EKALEVFSDLKKEYGFPVLTD--IHTEEQCA-AVAPV-VDVLQIPAFLCRQTDLLIAAARTGRVVNVKKGQF-------- 165 (298)
T ss_dssp HHHHHHHHHHHHHHCCCEEEE--CCSHHHHH-HHTTT-CSEEEECGGGTTCHHHHHHHHHTTSEEEEECCTT--------
T ss_pred HHHHHHHHHHHHhcCCeEEEE--eCCHHHHH-HHHhh-CCEEEECccccCCHHHHHHHHccCCcEEEeCCCC--------
Confidence 4555554 4556899987643 33332222 12222 322 456666778999999995321
Q ss_pred ECCHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 013241 150 AKEPDEFVKLLQQAKSEAAAAFGNDGVYL 178 (447)
Q Consensus 150 v~~~~el~~~~~~~~~~~~~~~~~~~~lv 178 (447)
-+.+|+..+++.+.+. |+..+++
T Consensus 166 -~t~~ei~~ave~i~~~-----Gn~~iiL 188 (298)
T 3fs2_A 166 -LAPWDMKNVLAKITES-----GNPNVLA 188 (298)
T ss_dssp -CCGGGHHHHHHHHHTT-----TCCCEEE
T ss_pred -CCHHHHHHHHHHHHHc-----CCCeEEE
Confidence 3678888888776543 4555544
No 209
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=22.58 E-value=91 Score=29.44 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=27.0
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEe
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~ 102 (447)
-++|||.+.|-++.-.++.++.+|..++++..
T Consensus 167 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~ 198 (340)
T 3s2e_A 167 GQWVVISGIGGLGHVAVQYARAMGLRVAAVDI 198 (340)
T ss_dssp TSEEEEECCSTTHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 47999999898999999999999997666544
No 210
>2dsy_A Hypothetical protein TTHA0281; structural genomics, thermus thermophilus HB8, NPPSFA; HET: NHE; 1.90A {Thermus thermophilus} SCOP: d.304.1.2
Probab=22.57 E-value=48 Score=25.17 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=18.8
Q ss_pred EEEEcCCHHHHHHHHHHhhhc
Q 013241 368 LIVWAPTREKAIERMKRALND 388 (447)
Q Consensus 368 vi~~g~~~~eA~~~~~~al~~ 388 (447)
+++.|+|.+||++.++.|+..
T Consensus 39 c~t~G~T~eEA~~~a~eAl~~ 59 (87)
T 2dsy_A 39 VWATGKSLKECEANLQAALED 59 (87)
T ss_dssp CEEEESSHHHHHHHHHHHHHH
T ss_pred eeEeeCCHHHHHHHHHHHHHH
Confidence 568999999999999999874
No 211
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=22.32 E-value=1.1e+02 Score=28.56 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=29.3
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccCh
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk 106 (447)
-++|||.+.|-++.-.++.++.+|..++++. ..++
T Consensus 143 g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~ 177 (315)
T 3goh_A 143 QREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLS 177 (315)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-Chhh
Confidence 4799999999999999999999999877776 4344
No 212
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=22.21 E-value=3.5e+02 Score=27.50 Aligned_cols=33 Identities=18% Similarity=0.347 Sum_probs=28.1
Q ss_pred CcEEEEecCcHHHHHHHHHH-HHcCCCeeEEEec
Q 013241 71 QEKILVANRGEIAVRVIRTA-HEMGIPCVAVYST 103 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~-~~lGi~~vav~~~ 103 (447)
-+|+.|...+..+..+++.+ +++|+.++.+.+.
T Consensus 280 GKrv~i~gd~~~~~~la~~L~~ElGm~vv~~gt~ 313 (525)
T 3aek_B 280 GKRVFIFGDGTHVIAAARIAAKEVGFEVVGMGCY 313 (525)
T ss_dssp TCEEEECSSHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CCEEEEEcCchHHHHHHHHHHHHcCCeeEEEecC
Confidence 37999998899999999999 8999998765443
No 213
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=22.19 E-value=4.2e+02 Score=23.66 Aligned_cols=33 Identities=9% Similarity=0.028 Sum_probs=26.8
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEEEec
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST 103 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav~~~ 103 (447)
-+++||.+ .+-|+..+++.+.+.|..++.+...
T Consensus 10 ~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~ 43 (281)
T 3s55_A 10 GKTALITGGARGMGRSHAVALAEAGADIAICDRC 43 (281)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 47889988 4679999999999999987766543
No 214
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Probab=22.07 E-value=2.5e+02 Score=26.08 Aligned_cols=75 Identities=16% Similarity=0.244 Sum_probs=41.7
Q ss_pred HHHHHHH-HHHHHcCCCeeEEEeccChhhHHHHHhccccCH-------HHHHHHhhhhCCcEEEEeCCCCCCcCeEEECC
Q 013241 81 EIAVRVI-RTAHEMGIPCVAVYSTIDKDALHVKLADESVCI-------EEAVKLADELGFPVMIKATAGGGGRGMRLAKE 152 (447)
Q Consensus 81 eia~ri~-r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i-------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~ 152 (447)
+-..++. +.|+++|+++..-........+-..+.| .+.+ -++.+.+...+.||++|--..+ +
T Consensus 72 ~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~~d-~~kIga~~~~n~~ll~~~a~~~kPV~lk~G~~~---------t 141 (280)
T 2qkf_A 72 EEGLKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCD-VIQLPAFLARQTDLVVAMAKTGNVVNIKKPQFL---------S 141 (280)
T ss_dssp HHHHHHHHHHHHHHCCCEEEECCSGGGHHHHHHHCS-EEEECGGGTTBHHHHHHHHHTCCEEEEECCTTS---------C
T ss_pred HHHHHHHHHHHHHcCCcEEEecCCHHHHHHHHhhCC-EEEECcccccCHHHHHHHHcCCCcEEEECCCCC---------C
Confidence 4445444 4458999997754332222111111211 1111 4566777789999999963321 5
Q ss_pred HHHHHHHHHHHHH
Q 013241 153 PDEFVKLLQQAKS 165 (447)
Q Consensus 153 ~~el~~~~~~~~~ 165 (447)
.+|+..+.+.+..
T Consensus 142 ~~e~~~A~~~i~~ 154 (280)
T 2qkf_A 142 PSQMKNIVEKFHE 154 (280)
T ss_dssp GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6688877766543
No 215
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*
Probab=21.90 E-value=4.3e+02 Score=24.02 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=25.3
Q ss_pred CcEEEEecC-cH--HHHHHHHHHHHcCCCeeEEEe
Q 013241 71 QEKILVANR-GE--IAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 71 ~~kvLianr-ge--ia~ri~r~~~~lGi~~vav~~ 102 (447)
-+++||.+. |- |+..+++.+.+.|..++.+..
T Consensus 31 gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r 65 (293)
T 3grk_A 31 GKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQ 65 (293)
T ss_dssp TCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcC
Confidence 478899885 45 999999999999988665543
No 216
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=21.79 E-value=2.2e+02 Score=26.15 Aligned_cols=69 Identities=20% Similarity=0.179 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH----------HHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCH
Q 013241 84 VRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------EEAVKLADELGFPVMIKATAGGGGRGMRLAKEP 153 (447)
Q Consensus 84 ~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~ 153 (447)
..+.+.|+++|+++..-.. |.... ..+++. +.+ .++.+.+.+.+.|+++|--.. -+.
T Consensus 77 ~~l~~~~~~~Gl~~~te~~--d~~~~-~~l~~~-vd~~kIga~~~~n~~ll~~~a~~~kPV~lk~G~~---------~t~ 143 (262)
T 1zco_A 77 RWMREAADEYGLVTVTEVM--DTRHV-ELVAKY-SDILQIGARNSQNFELLKEVGKVENPVLLKRGMG---------NTI 143 (262)
T ss_dssp HHHHHHHHHHTCEEEEECC--CGGGH-HHHHHH-CSEEEECGGGTTCHHHHHHHTTSSSCEEEECCTT---------CCH
T ss_pred HHHHHHHHHcCCcEEEeeC--CHHhH-HHHHhh-CCEEEECcccccCHHHHHHHHhcCCcEEEecCCC---------CCH
Confidence 3456667889988765332 33221 222232 332 456666777899999984221 167
Q ss_pred HHHHHHHHHHHH
Q 013241 154 DEFVKLLQQAKS 165 (447)
Q Consensus 154 ~el~~~~~~~~~ 165 (447)
+|+..+++.+..
T Consensus 144 ~e~~~Av~~i~~ 155 (262)
T 1zco_A 144 QELLYSAEYIMA 155 (262)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 888888876543
No 217
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=21.79 E-value=4.8e+02 Score=24.54 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=23.2
Q ss_pred CCcEEEEecCcH-----HHHHHHHHHHHcCCCeeEE
Q 013241 70 RQEKILVANRGE-----IAVRVIRTAHEMGIPCVAV 100 (447)
Q Consensus 70 ~~~kvLianrge-----ia~ri~r~~~~lGi~~vav 100 (447)
|-+||||+.+|. -|+.+++.+++.|..+.-+
T Consensus 1 M~~~i~i~~GGTgGHi~palala~~L~~~g~~V~~v 36 (365)
T 3s2u_A 1 MKGNVLIMAGGTGGHVFPALACAREFQARGYAVHWL 36 (365)
T ss_dssp --CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCcEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 457999998763 3889999999999875433
No 218
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=21.76 E-value=4.3e+02 Score=23.61 Aligned_cols=32 Identities=6% Similarity=-0.071 Sum_probs=26.4
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEEEe
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav~~ 102 (447)
-+++||.+ .+-|+..+++.+.+.|..++.+..
T Consensus 15 gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r 47 (280)
T 3pgx_A 15 GRVAFITGAARGQGRSHAVRLAAEGADIIACDI 47 (280)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEec
Confidence 47889988 468999999999999998776654
No 219
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=21.70 E-value=1.1e+02 Score=30.39 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=26.8
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEE
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~ 101 (447)
-.||+|.+.|-++..+++.++.+|..+..+.
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D 220 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRLGAVVSATD 220 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEc
Confidence 4799999999999999999999999655443
No 220
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=21.68 E-value=4.5e+02 Score=23.70 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=26.3
Q ss_pred ccccCCcEEEEec-CcHHHHHHHHHHHHcCCCeeEE
Q 013241 66 KVTCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAV 100 (447)
Q Consensus 66 ~~~~~~~kvLian-rgeia~ri~r~~~~lGi~~vav 100 (447)
+.+.+-+++||.+ .+-|+..+++.+.+.|..++.+
T Consensus 20 ~~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~ 55 (281)
T 3v2h_A 20 FQSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLN 55 (281)
T ss_dssp --CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 3344557899998 4689999999999999876544
No 221
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=21.65 E-value=4.4e+02 Score=23.61 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=25.8
Q ss_pred CCcEEEEec-CcHHHHHHHHHHHHcCCCeeEEE
Q 013241 70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 70 ~~~kvLian-rgeia~ri~r~~~~lGi~~vav~ 101 (447)
.-+++||.+ .+-|+..+++.+.+.|..++.+.
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~ 42 (281)
T 3svt_A 10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVG 42 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 347899988 56899999999999998866553
No 222
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Probab=21.62 E-value=4.4e+02 Score=23.62 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=25.1
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEEE
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav~ 101 (447)
-+++||.+ .|-|+..+++.+.+.|..++.+.
T Consensus 29 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~ 60 (283)
T 1g0o_A 29 GKVALVTGAGRGIGREMAMELGRRGCKVIVNY 60 (283)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 36888888 56899999999999998766554
No 223
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=21.60 E-value=1.2e+02 Score=30.39 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=29.8
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEecc
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI 104 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~ 104 (447)
-||+.|...+..+..+++.++++|+.++.+.+..
T Consensus 313 Gkrv~i~~~~~~~~~l~~~L~elGm~vv~~~~~~ 346 (458)
T 3pdi_B 313 SARTAIAADPDLLLGFDALLRSMGAHTVAAVVPA 346 (458)
T ss_dssp TCEEEEECCHHHHHHHHHHHHTTTCEEEEEEESS
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEEECC
Confidence 3899999999999999999999999998776543
No 224
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=21.54 E-value=1.6e+02 Score=27.43 Aligned_cols=35 Identities=14% Similarity=0.067 Sum_probs=28.2
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccCh
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk 106 (447)
-++++|.+.|.++..++..+.+.|...+.++ .++.
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~-nR~~ 175 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLLSTAAERIDMA-NRTV 175 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCSEEEEE-CSSH
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCCCEEEEE-eCCH
Confidence 4799999999999999999999998655543 3444
No 225
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=21.43 E-value=5.3e+02 Score=24.58 Aligned_cols=53 Identities=13% Similarity=0.248 Sum_probs=39.3
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEE
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIK 137 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvK 137 (447)
.+.|+.+..|..+..++-+|+.+|++++.+...... .+-.+.++.+|--+++-
T Consensus 93 ~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~--------------~~k~~~~~~~GA~Vv~v 145 (364)
T 4h27_A 93 CAHFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTP--------------ALTIERLKNEGATVKVV 145 (364)
T ss_dssp CCEEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSC--------------HHHHHHHHTTTCEEEEE
T ss_pred CCEEEEeCCChHHHHHHHHHHHhCCceEEEECCCCC--------------HHHHHHHHHcCCEEEEE
Confidence 467888899999999999999999998887765433 33445556666555544
No 226
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=21.42 E-value=1.5e+02 Score=28.46 Aligned_cols=36 Identities=31% Similarity=0.332 Sum_probs=28.9
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccCh
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk 106 (447)
-++|||.+.|-++.-.++.++.+|..++++....++
T Consensus 195 g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~ 230 (369)
T 1uuf_A 195 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAK 230 (369)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 479999999999999999999999986665544333
No 227
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=21.32 E-value=1.3e+02 Score=30.14 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=29.7
Q ss_pred CccccCCcEEEEecCcHHHHHHHHHHHHcCCCeeEEE
Q 013241 65 LKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 65 ~~~~~~~~kvLianrgeia~ri~r~~~~lGi~~vav~ 101 (447)
+.++..-++|||.+.|+.|.+.++.+.+.|..+..+.
T Consensus 6 ~~~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~ 42 (457)
T 1pjq_A 6 IFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNA 42 (457)
T ss_dssp EEECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEE
T ss_pred eEEECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEc
Confidence 3445555899999999999999999999997655443
No 228
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1
Probab=21.00 E-value=1.5e+02 Score=28.81 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=28.4
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccCh
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk 106 (447)
=++|+|.+-|.++..+++.+.++|..++ .+..|.
T Consensus 173 GktV~V~G~G~VG~~~A~~L~~~GakVv--v~D~~~ 206 (364)
T 1leh_A 173 GLAVSVQGLGNVAKALCKKLNTEGAKLV--VTDVNK 206 (364)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEE--EECSCH
T ss_pred cCEEEEECchHHHHHHHHHHHHCCCEEE--EEcCCH
Confidence 3799999999999999999999999866 334454
No 229
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=20.97 E-value=4.8e+02 Score=24.22 Aligned_cols=93 Identities=15% Similarity=0.088 Sum_probs=51.9
Q ss_pred CcEEEEecCcHHHHH-HHHHHHHc-CCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEe---CCCCCCc
Q 013241 71 QEKILVANRGEIAVR-VIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKA---TAGGGGR 145 (447)
Q Consensus 71 ~~kvLianrgeia~r-i~r~~~~l-Gi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP---~~g~Gg~ 145 (447)
|=|+-|.+-|.++.. .+.++++. ++..++++. .|. +.+.++++++|.|-+..- .-.....
T Consensus 23 mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d-~~~--------------~~a~~~a~~~g~~~~y~d~~ell~~~~i 87 (350)
T 4had_A 23 MLRFGIISTAKIGRDNVVPAIQDAENCVVTAIAS-RDL--------------TRAREMADRFSVPHAFGSYEEMLASDVI 87 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEEC-SSH--------------HHHHHHHHHHTCSEEESSHHHHHHCSSC
T ss_pred ccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEEC-CCH--------------HHHHHHHHHcCCCeeeCCHHHHhcCCCC
Confidence 458999999999965 57777776 555555543 444 555666667766532110 0001233
Q ss_pred CeEEECCHHHHHHHH-HHHHHHHHHhcCCCcEEEeeccCC
Q 013241 146 GMRLAKEPDEFVKLL-QQAKSEAAAAFGNDGVYLEKYVQN 184 (447)
Q Consensus 146 Gv~~v~~~~el~~~~-~~~~~~~~~~~~~~~~lvEefI~G 184 (447)
.+..+-++..+...+ ..+.+. ...+|+|+=+.-
T Consensus 88 DaV~I~tP~~~H~~~~~~al~a------GkhVl~EKPla~ 121 (350)
T 4had_A 88 DAVYIPLPTSQHIEWSIKAADA------GKHVVCEKPLAL 121 (350)
T ss_dssp SEEEECSCGGGHHHHHHHHHHT------TCEEEECSCCCS
T ss_pred CEEEEeCCCchhHHHHHHHHhc------CCEEEEeCCccc
Confidence 444555555443322 222221 367899987654
No 230
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=20.95 E-value=4.4e+02 Score=23.40 Aligned_cols=30 Identities=23% Similarity=0.185 Sum_probs=24.2
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEE
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAV 100 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav 100 (447)
.+++||.+ .+-++..+++.+.+.|..++..
T Consensus 26 ~k~vlITGas~gIG~a~a~~l~~~G~~V~~~ 56 (272)
T 4e3z_A 26 TPVVLVTGGSRGIGAAVCRLAARQGWRVGVN 56 (272)
T ss_dssp SCEEEETTTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 36788888 4689999999999999876443
No 231
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}
Probab=20.95 E-value=1.4e+02 Score=28.12 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=29.5
Q ss_pred CcEEEEecC-cHHHHHHHHHHHHcCCCeeEEEeccCh
Q 013241 71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDK 106 (447)
Q Consensus 71 ~~kvLianr-geia~ri~r~~~~lGi~~vav~~~~dk 106 (447)
-++|||.+. |-++..+++.++.+|..++.+....++
T Consensus 160 g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~ 196 (342)
T 4eye_A 160 GETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAA 196 (342)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 479999997 999999999999999987766554444
No 232
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=20.85 E-value=4.6e+02 Score=23.57 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=25.1
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEEE
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav~ 101 (447)
-+++||.+ .+-|+..+++.+.+.|..++.+.
T Consensus 29 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~ 60 (280)
T 4da9_A 29 RPVAIVTGGRRGIGLGIARALAASGFDIAITG 60 (280)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCeEEEEe
Confidence 46789988 46899999999999998766554
No 233
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=20.85 E-value=4.6e+02 Score=23.50 Aligned_cols=32 Identities=9% Similarity=0.115 Sum_probs=25.4
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEEEe
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav~~ 102 (447)
-+++||.+ .+-|+..+++.+.+.|..++.+..
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r 60 (270)
T 3ftp_A 28 KQVAIVTGASRGIGRAIALELARRGAMVIGTAT 60 (270)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 46888888 468999999999999997665543
No 234
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=20.81 E-value=4.2e+02 Score=23.04 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=25.5
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEEEe
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS 102 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav~~ 102 (447)
-+++||.+ .+-++..+++.+.+.|..++.+..
T Consensus 5 ~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r 37 (247)
T 3lyl_A 5 EKVALVTGASRGIGFEVAHALASKGATVVGTAT 37 (247)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 36888888 468999999999999988665543
No 235
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=20.64 E-value=4.5e+02 Score=23.32 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=25.0
Q ss_pred CcEEEEec-CcHHHHHHHHHHHHcCCCeeEEE
Q 013241 71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 71 ~~kvLian-rgeia~ri~r~~~~lGi~~vav~ 101 (447)
-+++||.+ .+-|+..+++.+.+.|..++.+.
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~ 42 (264)
T 3ucx_A 11 DKVVVISGVGPALGTTLARRCAEQGADLVLAA 42 (264)
T ss_dssp TCEEEEESCCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence 36888888 45799999999999998866553
No 236
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=20.52 E-value=1.3e+02 Score=28.63 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=26.5
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCC-CeeEEEe
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYS 102 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi-~~vav~~ 102 (447)
-++|||.+.|-++.-.++.++.+|. .++.+..
T Consensus 172 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~ 204 (356)
T 1pl8_A 172 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDL 204 (356)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 4799999999999999999999998 5555543
No 237
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=20.40 E-value=1.6e+02 Score=27.29 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=25.6
Q ss_pred CcEEEEecCcHHHHHHHHHHHHcCCCeeEEE
Q 013241 71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY 101 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~~lGi~~vav~ 101 (447)
-+++||++.|-++..++..+.+.| ..+.++
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G-~~v~V~ 147 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQG-LQVSVL 147 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 479999999999999999999999 545444
No 238
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A
Probab=20.33 E-value=2.8e+02 Score=25.92 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=42.3
Q ss_pred HHHHHH-HHHHHHcCCCeeEEEeccChhhHHHHHhccccCH----------HHHHHHhhhhCCcEEEEeCCCCCCcCeEE
Q 013241 81 EIAVRV-IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------EEAVKLADELGFPVMIKATAGGGGRGMRL 149 (447)
Q Consensus 81 eia~ri-~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~ 149 (447)
+-..++ .+.|+++|+++..-. -|..... .+++ .+.+ -++.+.+...+.||++|--..+
T Consensus 75 ~~gl~~l~~~~~~~Glp~~te~--~d~~~~~-~l~~-~vd~~kIgA~~~~n~~Ll~~~a~~~kPV~lk~G~~~------- 143 (292)
T 1o60_A 75 EEGLKIFQELKDTFGVKIITDV--HEIYQCQ-PVAD-VVDIIQLPAFLARQTDLVEAMAKTGAVINVKKPQFL------- 143 (292)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEC--CSGGGHH-HHHT-TCSEEEECGGGTTCHHHHHHHHHTTCEEEEECCTTS-------
T ss_pred HHHHHHHHHHHHHcCCcEEEec--CCHHHHH-HHHh-cCCEEEECcccccCHHHHHHHHcCCCcEEEeCCCCC-------
Confidence 344444 445589999876543 2332222 2222 3333 4566767789999999963321
Q ss_pred ECCHHHHHHHHHHHHH
Q 013241 150 AKEPDEFVKLLQQAKS 165 (447)
Q Consensus 150 v~~~~el~~~~~~~~~ 165 (447)
+.+|+..+.+.+..
T Consensus 144 --t~~ei~~Av~~i~~ 157 (292)
T 1o60_A 144 --SPSQMGNIVEKIEE 157 (292)
T ss_dssp --CGGGHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHH
Confidence 56688888776544
No 239
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=20.20 E-value=2.7e+02 Score=26.05 Aligned_cols=74 Identities=19% Similarity=0.350 Sum_probs=44.4
Q ss_pred HHHHHH-HHHHHHcCCCeeEEEeccChhhHHHHHhccccCH----------HHHHHHhhhhCCcEEEEeCCCCCCcCeEE
Q 013241 81 EIAVRV-IRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI----------EEAVKLADELGFPVMIKATAGGGGRGMRL 149 (447)
Q Consensus 81 eia~ri-~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i----------~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~ 149 (447)
+-++++ .+.|++.|+++..-.. |...... +++. +.+ -++.+.+...+.||++|--..
T Consensus 74 ~~GL~~L~~~~~e~Glp~~tev~--d~~~v~~-l~~~-vd~lkIgA~~~~n~~LLr~~a~~gkPVilK~G~~-------- 141 (288)
T 3tml_A 74 DEGLRILSEVKRQLGLPVLTDVH--SIDEIEQ-VASV-VDVLQTPAFLCRQTDFIHACARSGKPVNIKKGQF-------- 141 (288)
T ss_dssp HHHHHHHHHHHHHHCCCEEEECC--SGGGHHH-HHHH-CSEEEECGGGTTCHHHHHHHHTSSSCEEEECCTT--------
T ss_pred HHHHHHHHHHHHhcCCeEEEEeC--CHHHHHH-HHHh-CCEEEECcccccCHHHHHHHHccCCcEEEeCCCC--------
Confidence 455555 4556689999775433 3222211 1221 222 456666778899999995321
Q ss_pred ECCHHHHHHHHHHHHHHH
Q 013241 150 AKEPDEFVKLLQQAKSEA 167 (447)
Q Consensus 150 v~~~~el~~~~~~~~~~~ 167 (447)
-+.+|+..+++.+.+..
T Consensus 142 -~t~~e~~~ave~i~~~G 158 (288)
T 3tml_A 142 -LAPHDMKNVIDKARDAA 158 (288)
T ss_dssp -CCTTHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcC
Confidence 26788888888877653
No 240
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=20.20 E-value=4.8e+02 Score=24.26 Aligned_cols=31 Identities=29% Similarity=0.266 Sum_probs=21.7
Q ss_pred CcEEEEecCcHHHHHHHHHHH-H-cCCCeeEEE
Q 013241 71 QEKILVANRGEIAVRVIRTAH-E-MGIPCVAVY 101 (447)
Q Consensus 71 ~~kvLianrgeia~ri~r~~~-~-lGi~~vav~ 101 (447)
+-||.|.+-|-++...++.+. + -++..++++
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~ 34 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVT 34 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEE
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCCcEEEEEE
Confidence 357888888888888888887 4 355544443
Done!