Citrus Sinensis ID: 013245
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 447 | ||||||
| 359489711 | 450 | PREDICTED: uncharacterized protein LOC10 | 0.988 | 0.982 | 0.734 | 0.0 | |
| 224064192 | 441 | predicted protein [Populus trichocarpa] | 0.977 | 0.990 | 0.729 | 0.0 | |
| 224127878 | 442 | predicted protein [Populus trichocarpa] | 0.977 | 0.988 | 0.730 | 0.0 | |
| 297745405 | 420 | unnamed protein product [Vitis vinifera] | 0.921 | 0.980 | 0.742 | 0.0 | |
| 255586547 | 457 | conserved hypothetical protein [Ricinus | 0.986 | 0.964 | 0.697 | 0.0 | |
| 147782919 | 486 | hypothetical protein VITISV_044114 [Viti | 0.984 | 0.905 | 0.698 | 0.0 | |
| 356560422 | 439 | PREDICTED: uncharacterized protein LOC10 | 0.975 | 0.993 | 0.682 | 1e-170 | |
| 356571226 | 441 | PREDICTED: uncharacterized protein LOC10 | 0.946 | 0.959 | 0.644 | 1e-166 | |
| 255537733 | 462 | conserved hypothetical protein [Ricinus | 0.957 | 0.926 | 0.584 | 1e-160 | |
| 224072162 | 462 | predicted protein [Populus trichocarpa] | 0.955 | 0.924 | 0.587 | 1e-159 |
| >gi|359489711|ref|XP_002276755.2| PREDICTED: uncharacterized protein LOC100263682 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/452 (73%), Positives = 377/452 (83%), Gaps = 10/452 (2%)
Query: 1 MVKEMRFDSNPLSLYKNKHNHVFVKFAVSFVLLGLAFRLFVSDSIRFSSVNF------ES 54
MV+EMRF+ NP SL++ HNH FVK A+ FVL+GLA RL+ SDSIRFSS E
Sbjct: 1 MVQEMRFEMNPFSLHQ--HNHTFVKCALCFVLMGLAVRLWFSDSIRFSSAVDSVETPPEG 58
Query: 55 QQTQIHVEEANTGPPVPSAPPIKPISADFHPNETHISS-NQEKCDLFTGEWIPDPSGPIY 113
+ + EE S P P+S DF N+ S + KCD+FTG+WIPDPSGP+Y
Sbjct: 59 KTESLAPEEQKAESLEDSLPIQTPVSVDFPGNDNQTSQKDSAKCDIFTGDWIPDPSGPVY 118
Query: 114 SNVTCHAIEGHQNCMRNGRPDSGYLYWRWNPRDCELPRFNPERFLNFMRNKWWAFIGDSI 173
+N +CHAIE HQNCMRNGRPDSGYLYWRWNPRDCELPRFNPERFL+ MRNK WAFIGDSI
Sbjct: 119 TNESCHAIENHQNCMRNGRPDSGYLYWRWNPRDCELPRFNPERFLDLMRNKSWAFIGDSI 178
Query: 174 SRNHVQSLLCILSQVEQAVEVYHDEEYRSKRWQFPSYNFTLSVVWTPFLLKAEVFEDING 233
SRNHVQSLLCILSQVE+AVEVYHDEEYRSKRW FPS+NFTLSV+WTPFL++A++FEDING
Sbjct: 179 SRNHVQSLLCILSQVEEAVEVYHDEEYRSKRWHFPSHNFTLSVIWTPFLIEADIFEDING 238
Query: 234 VSSSEIRLYLDELDTKWTEQYKNFDYVVIAGGKWFLKTAIYHENNTVKGCHYCPGKNLTE 293
VSSS++ L+LD+LD WTEQYK+FDYVVIAGGKWFLKTAIY+ N+TV GCHYCPG+NLTE
Sbjct: 239 VSSSDVMLHLDKLDKNWTEQYKSFDYVVIAGGKWFLKTAIYYVNDTVMGCHYCPGRNLTE 298
Query: 294 LGFDYAYRKALQLVLSFVTRLDQKAFVFLRTTTPDHFENGEWFSGGTCNRSVPFKEGEVE 353
LGF++AYRKALQ++L+FVT D K FVFLRTTTPDHFENGEWFSGGTC R VPFKEGE++
Sbjct: 299 LGFEFAYRKALQMILNFVTGSDHKGFVFLRTTTPDHFENGEWFSGGTCKRMVPFKEGEID 358
Query: 354 MRDIDCTMRDIELEEFGKATG-IGAEKGVTLKLLDTTSLSLLRPDGHPGPYRQFQPFAKD 412
MRDID MRDIELEEF K G E+GV LKLLDTT LSLLRPDGHPGPYRQF PFA+D
Sbjct: 359 MRDIDRIMRDIELEEFEKVVADAGTERGVILKLLDTTHLSLLRPDGHPGPYRQFHPFAED 418
Query: 413 KNAKVQNDCLHWCLPGPIDSWNDLLMEMMVDG 444
KNA VQNDCLHWCLPGPIDSWNDL+MEM+V+G
Sbjct: 419 KNATVQNDCLHWCLPGPIDSWNDLVMEMLVNG 450
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224064192|ref|XP_002301401.1| predicted protein [Populus trichocarpa] gi|222843127|gb|EEE80674.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224127878|ref|XP_002320186.1| predicted protein [Populus trichocarpa] gi|222860959|gb|EEE98501.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|297745405|emb|CBI40485.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|255586547|ref|XP_002533910.1| conserved hypothetical protein [Ricinus communis] gi|223526131|gb|EEF28475.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|147782919|emb|CAN76813.1| hypothetical protein VITISV_044114 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356560422|ref|XP_003548491.1| PREDICTED: uncharacterized protein LOC100794524 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356571226|ref|XP_003553780.1| PREDICTED: uncharacterized protein LOC100795653 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|255537733|ref|XP_002509933.1| conserved hypothetical protein [Ricinus communis] gi|223549832|gb|EEF51320.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|224072162|ref|XP_002303634.1| predicted protein [Populus trichocarpa] gi|222841066|gb|EEE78613.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 447 | ||||||
| TAIR|locus:2035342 | 456 | TBL25 "AT1G01430" [Arabidopsis | 0.968 | 0.949 | 0.563 | 2.2e-137 | |
| TAIR|locus:2125048 | 442 | TBL26 "AT4G01080" [Arabidopsis | 0.771 | 0.780 | 0.616 | 8.7e-132 | |
| TAIR|locus:2136113 | 432 | TBL23 "AT4G11090" [Arabidopsis | 0.944 | 0.976 | 0.504 | 9.2e-123 | |
| TAIR|locus:2128489 | 430 | TBL24 "AT4G23790" [Arabidopsis | 0.939 | 0.976 | 0.504 | 2.9e-119 | |
| TAIR|locus:2146062 | 526 | TBL21 "AT5G15890" [Arabidopsis | 0.776 | 0.659 | 0.460 | 8.3e-90 | |
| TAIR|locus:2146077 | 426 | TBL19 "AT5G15900" [Arabidopsis | 0.776 | 0.814 | 0.423 | 1e-82 | |
| TAIR|locus:2020628 | 416 | TBL27 "TRICHOME BIREFRINGENCE- | 0.885 | 0.951 | 0.394 | 1.2e-81 | |
| TAIR|locus:2091388 | 414 | TBL22 "AT3G28150" [Arabidopsis | 0.758 | 0.818 | 0.383 | 2e-72 | |
| TAIR|locus:2076909 | 373 | TBL20 "AT3G02440" [Arabidopsis | 0.565 | 0.678 | 0.441 | 1.3e-61 | |
| TAIR|locus:2153077 | 501 | YLS7 "AT5G51640" [Arabidopsis | 0.785 | 0.700 | 0.336 | 1.4e-60 |
| TAIR|locus:2035342 TBL25 "AT1G01430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1345 (478.5 bits), Expect = 2.2e-137, P = 2.2e-137
Identities = 253/449 (56%), Positives = 313/449 (69%)
Query: 3 KEMRFDSNPLSLYKNKHNHVFVKFAVSFVLLGLAFRLFVSDSIRFSSVNFESQQTQIHVE 62
K ++ + P ++ N +F+K F+L+GLA+R +++S S + +
Sbjct: 9 KSIKIEGTPFGS-SHQRNQIFLKSVAFFLLIGLAYRFLITNSTVSPVPTVRSSPESLPPD 67
Query: 63 EANTGXXXXXXXXXXXXXXDFHPNETHISSNQ--EKCDLFTGEWIPDPSGPIYSNVTCHA 120
+ D N T I+S KCD+F G W+PDPSGPIY+NV+C
Sbjct: 68 PSGL-----TAITQTSASVDSPANITTIASQNVSTKCDIFIGNWVPDPSGPIYTNVSCRH 122
Query: 121 IEGHQNCMRNGRPDSGYLYWRWNPRDCELPRFNPERFLNFMRNKWWAFIGDSISRNHVQS 180
I+ +QNC++NGRPD YL WRW PRDC+LPRFNPE+FL+ MRNKW AFIGDSISRNHVQS
Sbjct: 123 IQDYQNCLKNGRPDVNYLRWRWQPRDCDLPRFNPEQFLDNMRNKWLAFIGDSISRNHVQS 182
Query: 181 LLCILSQVEQAVEVYHDEEYRSKRWQFPSYNFTLSVVWTPFLLKAEVFEDINGVSSSEIR 240
LLCILSQVE+ +++HD+EY+S+ W+FPSYNFTLSV+W+PFL+KAE FE NGV S+IR
Sbjct: 183 LLCILSQVEEVEDIFHDKEYKSRIWRFPSYNFTLSVIWSPFLVKAETFE--NGVPFSDIR 240
Query: 241 LYLDELDTKWTEQYKNFDYVVIAGGKWFLKTAIYHENNTVKGCHYCPGKN-LTELGFDYA 299
++LD+LD KWT+QY NFDYVVI+GGKWFLKT I+HENNTV GCHYC GKN +TELG+ Y+
Sbjct: 241 VHLDKLDQKWTDQYINFDYVVISGGKWFLKTTIFHENNTVTGCHYCQGKNNMTELGYLYS 300
Query: 300 YRKALQLVLSFVTRLDQKAFVFLRTTTPDHFENGEWFSGGTCNRSVPFKEG-EVEMRDID 358
YRK L LVL FV + KA V RTTTPDHFENGEW SGG CNR++PF EG E EM+ D
Sbjct: 301 YRKVLHLVLDFVAEPNHKAQVLFRTTTPDHFENGEWDSGGFCNRTMPFTEGSEGEMKSED 360
Query: 359 CTMRDIELEEFGKATGIGAE-KGVXXXXXXXXXXXXXRPDGHPGPYRQFQPFAKDKNAK- 416
+MRDIELEEF K T E RPDGHPGPYR PFA KN +
Sbjct: 361 VSMRDIELEEFYKTTTTQQEGSNSNIVLLDTTSMSLLRPDGHPGPYRYPNPFAGLKNKEL 420
Query: 417 --VQNDCLHWCLPGPIDSWNDLLMEMMVD 443
VQNDCLHWCLPGPIDSWNDL++E+M++
Sbjct: 421 NQVQNDCLHWCLPGPIDSWNDLMVEVMLN 449
|
|
| TAIR|locus:2125048 TBL26 "AT4G01080" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2136113 TBL23 "AT4G11090" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2128489 TBL24 "AT4G23790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2146062 TBL21 "AT5G15890" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2146077 TBL19 "AT5G15900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2020628 TBL27 "TRICHOME BIREFRINGENCE-LIKE 27" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2091388 TBL22 "AT3G28150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2076909 TBL20 "AT3G02440" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2153077 YLS7 "AT5G51640" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 447 | |||
| pfam13839 | 270 | pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Estera | 1e-100 | |
| PLN02629 | 387 | PLN02629, PLN02629, powdery mildew resistance 5 | 1e-42 | |
| pfam14416 | 55 | pfam14416, PMR5N, PMR5 N terminal Domain | 3e-26 |
| >gnl|CDD|222410 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p | Back alignment and domain information |
|---|
Score = 300 bits (770), Expect = e-100
Identities = 111/295 (37%), Positives = 155/295 (52%), Gaps = 27/295 (9%)
Query: 149 LPRFNPERFLNFMRNKWWAFIGDSISRNHVQSLLCILSQVEQAVEVYHDEEYRSKRWQFP 208
LPRF+ ++FL +R K F+GDS+SRN +SL+C+LSQVE + + R R++F
Sbjct: 1 LPRFDAQQFLERLRGKRVVFVGDSLSRNQWESLVCLLSQVEPPKGKTLERDGRLFRFRFK 60
Query: 209 SYNFTLSVVWTPFLLKAEVFEDINGVSSSEIRLYLDELDTKWTEQYKNFDYVVIAGGKWF 268
YN T+ W+PFL+ + + + L LD +D KW++ + D +V G W+
Sbjct: 61 DYNVTIEFYWSPFLV------ESDNAEEGKRVLKLDSIDEKWSKLWPGADVLVFNSGHWW 114
Query: 269 LKTAIYHENNTVKGCHYCPGKNLTELGFDYAYRKALQLVLSFV--TRLDQKAFVFLRTTT 326
L +Y G YC N E+GF AYRKAL+ +V K VF RT +
Sbjct: 115 LHRKVYI------GWDYCQKSNYKEMGFLDAYRKALETWAKWVDVNLPPSKTRVFFRTFS 168
Query: 327 PDHFENGEWFSGGTCNRSVPFKEGEVEMRDIDCTMRDIELEEFGKATGIGAEKGVTLKLL 386
P HFE GEW +GG+C + P E + + M DI E + A +KLL
Sbjct: 169 PVHFEGGEWNTGGSCYETEPLL--GSEYKGLTPEMIDIVNEVLSR-----AAMKTPVKLL 221
Query: 387 DTTSLSLLRPDGHPGPYRQFQPFAKDKNAKVQNDCLHWCLPGPIDSWNDLLMEMM 441
D T LS R DGHP YR+ P K+ DCLHWCLPG D+WN+LL+ ++
Sbjct: 222 DITLLSQYRKDGHPSVYRKPGPPKKE------QDCLHWCLPGVPDTWNELLLALL 270
|
The PC-Esterase family is comprised of Cas1p, the Homo sapiens C7orf58, Arabidopsis thaliana PMR5 and a group of plant freezing resistance/coldacclimatization proteins typified by Arabidopsis thaliana ESKIMO1, animal FAM55D proteins, and animal FAM113 proteins. The PC-Esterase family has features that are both similar and different from the canonical GDSL/SGNH superfamily. The members of this family are predicted to have Acyl esterase activity and predicted to modify cell-surface biopolymers such as glycans and glycoproteins. The Cas1p protein has a Cas1_AcylT domain, in addition, with the opposing acyltransferase activity. The C7orf58 family has a ATP-Grasp domain fused to the PC-Esterase and is the first identified secreted tubulin-tyrosine ligase like enzyme in eukaryotes. The plant family with PMR5, ESK1, TBL3 etc have a N-terminal C rich potential sugar binding domain followed by the PC-Esterase domain. Length = 270 |
| >gnl|CDD|215338 PLN02629, PLN02629, powdery mildew resistance 5 | Back alignment and domain information |
|---|
| >gnl|CDD|206583 pfam14416, PMR5N, PMR5 N terminal Domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 447 | |||
| PLN02629 | 387 | powdery mildew resistance 5 | 100.0 | |
| PF13839 | 263 | PC-Esterase: GDSL/SGNH-like Acyl-Esterase family f | 100.0 | |
| PF14416 | 55 | PMR5N: PMR5 N terminal Domain | 99.94 | |
| cd01842 | 183 | SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG | 97.6 |
| >PLN02629 powdery mildew resistance 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-116 Score=899.17 Aligned_cols=327 Identities=32% Similarity=0.610 Sum_probs=285.3
Q ss_pred CCCCCCCccCceecCCCCCCcCCCCCC-CccCCcccccCCCCCCCCceeeecCCCCCCCCCChHHHHHHhcCCeEEEEec
Q 013245 93 NQEKCDLFTGEWIPDPSGPIYSNVTCH-AIEGHQNCMRNGRPDSGYLYWRWNPRDCELPRFNPERFLNFMRNKWWAFIGD 171 (447)
Q Consensus 93 ~~~~CD~f~G~WV~D~~~PlY~~~~Cp-~i~~~~~C~~nGRpD~~Yl~WRWqP~~C~Lprfd~~~fLe~lRgKrl~FVGD 171 (447)
+.++||+|+|+||+|+++|+|++++|| ||+++|||++|||||++|++|||||++|+||||||.+||++|||||||||||
T Consensus 49 ~~~~CD~f~G~WV~D~s~PlY~~~~Cp~fi~~~~nC~knGRPD~~Yl~WRWqP~gC~LPRFda~~fLe~~RgKrl~FVGD 128 (387)
T PLN02629 49 NQSTCALFVGTWVRDDSYPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQPLNCELPRFNGLEFLLKMKGKTVMFVGD 128 (387)
T ss_pred CccccCCCCCeEecCCCCCCCCCCCCccccccccchhhcCCCCcchhhccccCCCCCCCCcCHHHHHHHhcCCeEEEecc
Confidence 467899999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhhhccccceeeeeccccceeeEEeecCCEEEEEEEcccccccccccccCCCCcceeEEEeccccchhh
Q 013245 172 SISRNHVQSLLCILSQVEQAVEVYHDEEYRSKRWQFPSYNFTLSVVWTPFLLKAEVFEDINGVSSSEIRLYLDELDTKWT 251 (447)
Q Consensus 172 Sl~Rnq~~SLlCLL~~v~~~~~v~~~~~~~~~~~~f~~yn~TV~f~WsPFLV~~~~~~~~~g~~~~~~~L~LD~~d~~wa 251 (447)
||+|||||||+|||+++++...+....+.+.++|+|++||+||+||||||||+.+.. .+ ...|+||+++. ++
T Consensus 129 SL~RNQ~eSLvClL~~~~p~~~~~~~~~~~~~~~~F~~yN~TV~~ywspfLV~~~~~---~~----~~~l~LD~id~-~a 200 (387)
T PLN02629 129 SLGRNQWESLICLISSSVPSTRTQMSRGDPLSTFKFLDYGVSISFYKAPYLVDIDAV---QG----KRVLKLEEISG-NA 200 (387)
T ss_pred ccchhHHHHHHHHhhccCCCCceeeecCCceEEEEeccCCEEEEEEecceEEeeecC---CC----ceeEEecCcch-hh
Confidence 999999999999999987655444445567889999999999999999999997632 22 34699999875 69
Q ss_pred hhcCCCcEEEEeceeeeeecceeccCCeeeccccC--CCCccccccHHHHHHHHHHHHHHHHh--ccCCccEEEEeecCC
Q 013245 252 EQYKNFDYVVIAGGKWFLKTAIYHENNTVKGCHYC--PGKNLTELGFDYAYRKALQLVLSFVT--RLDQKAFVFLRTTTP 327 (447)
Q Consensus 252 ~~~~~~DvLVfNtGhWw~r~~~y~e~g~~~g~~~~--~~~~~~~~~~~~Ayr~al~t~~~~v~--~~~~k~~vffRT~SP 327 (447)
+.|+++|||||||||||.+++ .+.||+++ .+.++++|++.+|||+||+||++||+ +++.+++|||||+||
T Consensus 201 ~~w~~~DvlVfntghWw~~~~------~~~~~~~~~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffrT~SP 274 (387)
T PLN02629 201 NAWRDADVLIFNTGHWWSHQG------SLQGWDYIESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSISP 274 (387)
T ss_pred hhhccCCEEEEeCccccCCCC------eeEEeeeeccCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCc
Confidence 999999999999999999864 44666655 44468899999999999999999997 778899999999999
Q ss_pred CCcCCCCCCCCC-----CC-CCcccCCCCcccccccchhhhhhhHHHHhhhhcccccccceeEEEeccccccCCCCCCCC
Q 013245 328 DHFENGEWFSGG-----TC-NRSVPFKEGEVEMRDIDCTMRDIELEEFGKATGIGAEKGVTLKLLDTTSLSLLRPDGHPG 401 (447)
Q Consensus 328 ~Hf~~g~W~~GG-----~C-~~T~P~~~~~~~~~~~~~~m~~i~~ee~~~a~~~~~~~~~~v~lLDIT~lS~~R~DgHps 401 (447)
+||+||+||+|| +| ++|+|+.++++ .++...+|+ ++|++. +.++++|+|||||+||++|||||||
T Consensus 275 ~Hfe~g~Wn~gg~~~~~~C~~et~P~~~~~~-~~~~~~~~~--~ve~v~------~~~~~~v~lLDIT~ls~lR~DgHPs 345 (387)
T PLN02629 275 THYNPSEWSAGASTTTKNCYGETTPMSGMTY-PGAYPDQMR--VVDEVI------RGMHNPAYLLDITLLSELRKDGHPS 345 (387)
T ss_pred ccccCCCcCCCCCCCCCCCccCCccCcCccc-cCcchHHHH--HHHHHH------HhcCCceEEEechhhhhcCCCCCcc
Confidence 999999999875 68 79999986554 344555554 344443 2356799999999999999999999
Q ss_pred CCCCCCcccccCCCCCCCCceecccCCchhHHHHHHHHHHh
Q 013245 402 PYRQFQPFAKDKNAKVQNDCLHWCLPGPIDSWNDLLMEMMV 442 (447)
Q Consensus 402 ~y~~~~~~~~~~~~~~~~DClHWCLPGvpDtWNelL~~~L~ 442 (447)
+|++..+.++.+++..++||+||||||||||||||||++|+
T Consensus 346 ~Y~~~~~~~~~~~p~~~~DC~HWCLPGvpDTWNelL~a~L~ 386 (387)
T PLN02629 346 IYSGDLSPSQRANPDRSADCSHWCLPGLPDTWNQLFYTALF 386 (387)
T ss_pred cccCCCchhhccCCCCCCCcccccCCCCCccHHHHHHHHHh
Confidence 99876566677778889999999999999999999999986
|
|
| >PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p | Back alignment and domain information |
|---|
| >PF14416 PMR5N: PMR5 N terminal Domain | Back alignment and domain information |
|---|
| >cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 447 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 2e-05
Identities = 66/456 (14%), Positives = 121/456 (26%), Gaps = 148/456 (32%)
Query: 82 DFHPNETH------ISSNQEK-CDLFTGEWIPDPSGPIYSNVTCHAIEGHQNCMRNGRPD 134
DF E +S ++ D F + + D I S I ++ +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL-- 65
Query: 135 SGYLYWRWNPRDCELPRFNPERFLNFMRNKWWAFIGDSISRNHVQSLLCILSQVEQAVEV 194
L+W ++F+ + + F+ I Q S + +
Sbjct: 66 --RLFWTL----LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP-----SMMTRMYIE 114
Query: 195 YHDEEYRSKRWQFPSYNFTLSVVWTPFLLKAEVFEDINGVSSSEIRLYLDELDTKWTEQY 254
D Y + F YN V ++R L EL
Sbjct: 115 QRDRLYNDNQ-VFAKYN-----VSRLQPYL-------------KLRQALLEL-------- 147
Query: 255 KNFDYVVIAG----GKWFL--------KTAIYHENN----TVKGCHYCPGKNLTELGFDY 298
+ V+I G GK ++ K + +K C+ P L L
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN-SPETVLEML---- 202
Query: 299 AYRKAL--QLVLSFVTRLDQKAFVFLRTTTP--------------------DHFENGE-W 335
+ L Q+ ++ +R D + + LR + + +N + W
Sbjct: 203 ---QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 336 --FSGG------TCNRSV-----PFKEGEVEMRDIDCTMRDIELEE-FGKATG------- 374
F+ T + V + + T+ E++ K
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 375 -------------IGAE-----------KGVTLKLLDTT---SLSLLRPDGHPGPYRQFQ 407
I K V L T SL++L P + + +
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 408 PFAKDKNAKVQNDCLHWCLPGPIDSWNDLLMEMMVD 443
F + L W D + ++V+
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSD------VMVVVN 409
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 447 | |||
| d3dc7a1 | 207 | Uncharacterized protein Lp3323 {Lactobacillus plan | 82.79 | |
| d3bzwa1 | 248 | Uncharacterized protein BT2961 {Bacteroides thetai | 81.23 |
| >d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323 {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: SGNH hydrolase family: BT2961-like domain: Uncharacterized protein Lp3323 species: Lactobacillus plantarum [TaxId: 1590]
Probab=82.79 E-value=0.21 Score=41.82 Aligned_cols=15 Identities=40% Similarity=0.492 Sum_probs=12.7
Q ss_pred hcCCeEEEEecchhH
Q 013245 161 MRNKWWAFIGDSISR 175 (447)
Q Consensus 161 lRgKrl~FVGDSl~R 175 (447)
+..|||+|+|||++-
T Consensus 2 ~~~kri~~iGDSit~ 16 (207)
T d3dc7a1 2 VSFKRPAWLGDSITA 16 (207)
T ss_dssp BCCSSEEEEESTTTS
T ss_pred CCCCEEEEEehHhhc
Confidence 357999999999984
|
| >d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|