Query 013246
Match_columns 447
No_of_seqs 318 out of 2080
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 06:57:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013246.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013246hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5u_A Uncharacterized membran 100.0 5.6E-47 1.9E-51 378.5 26.2 293 89-421 6-302 (320)
2 3v5u_A Uncharacterized membran 99.8 2E-19 7E-24 179.4 14.5 145 276-425 4-148 (320)
3 2oar_A Large-conductance mecha 21.5 45 0.0016 29.5 2.3 32 333-364 31-69 (174)
4 2kdc_A Diacylglycerol kinase; 14.0 3.2E+02 0.011 22.4 5.8 44 76-119 40-84 (121)
5 3hzq_A Large-conductance mecha 12.1 4.8E+02 0.016 21.3 6.1 17 335-351 30-47 (114)
6 3gia_A Uncharacterized protein 7.2 1.2E+03 0.041 22.2 8.3 20 232-251 407-426 (444)
7 3rko_M NADH-quinone oxidoreduc 7.2 1.5E+03 0.052 22.7 9.3 29 277-305 467-495 (509)
8 3lae_A UPF0053 protein HI0107; 7.0 1.5E+02 0.0052 22.1 1.2 25 111-135 20-52 (81)
9 3arc_L Photosystem II reaction 6.8 5.5E+02 0.019 16.5 3.9 27 181-207 7-33 (37)
10 3llb_A Uncharacterized protein 6.4 1.6E+02 0.0056 22.0 1.0 25 110-134 19-51 (83)
No 1
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=100.00 E-value=5.6e-47 Score=378.51 Aligned_cols=293 Identities=18% Similarity=0.161 Sum_probs=241.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--Ccccchhhhhcc-chhHHHHHHHHhhCCCcceeehhhhhHHHHHHHHH
Q 013246 89 PWVFALSLLGLTPLAERVSFLTEQIAFYTG--PTVGGLLNATCG-NATELIIAIFALYGRKIDVVKYSLLGSILSNLLLV 165 (447)
Q Consensus 89 ~~~F~~~~l~iipla~~l~~~~e~la~~~G--~~vgGll~a~~g-n~pElivsi~Al~~g~~~iv~gsilGSil~nlllv 165 (447)
...|++++++++++++++++++|++|+++| |.+.|++++++| |+||+++++.|..+|++|+++||++|||++|++++
T Consensus 6 ~~~l~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~nillv 85 (320)
T 3v5u_A 6 VGYFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIGLV 85 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHHHHHHH
Confidence 346789999999999999999999999999 899999999999 79999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccccccccccchhhhHHHHHHHHHHHHHHH
Q 013246 166 LGTSLFCGGIANLRKEQKYDRKQADVNSLLLLLALLCHMLPLLFKYAAASSDITAKATLQLSRASSIVMLIGYFAYLVFQ 245 (447)
Q Consensus 166 lG~~~l~gg~~~~~~~q~~~~~~a~~~~~ll~lav~~lllP~~~~~~~~~~~~~~~~~~~ls~~~siiLl~~Y~~yl~f~ 245 (447)
+|++.++++++ .++.+. ++. .+++++++.+ ++. ..+ . ++|+++++|+..|+.|++|+
T Consensus 86 lG~~~li~p~~---v~~~~~-~d~----~~~l~~~~~l-~~~-----------~~~--g-is~~~g~~Ll~~Y~~yl~~~ 142 (320)
T 3v5u_A 86 LGLSAIISPII---VDKNLQ-KNI----LVYLLFVIFA-AVI-----------GID--G-FSWIDGVVLLILFIIYLRWT 142 (320)
T ss_dssp HHHHHHHSCBC---CCHHHH-HHH----HHHHHHHHHH-HHH-----------TTT--C-BCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccc---ccHHHH-HHH----HHHHHHHHHH-HHH-----------HHc--c-cHHHHHHHHHHHHHHHHHHH
Confidence 99999998765 333332 331 2223332221 111 122 3 89999999999999999999
Q ss_pred HHhhhhhhccccCCCCCCCccccCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhcCCCcchhhheehhcccchh
Q 013246 246 LWTHREFFEAQEDSEDDDDVTEETPVIGFWSGFAWLVGMTAIIALLSEFVVGTIEDASNSWGISVSFISIILLPIVGNAA 325 (447)
Q Consensus 246 l~th~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~li~~~a~~lV~si~~i~~~~gis~~fiGlillpi~tslp 325 (447)
+++|++ +++ | ++++++.+.++.+.+++++++++..+++++|++++.+++.+|+|+.++|++++|++||+|
T Consensus 143 ~~~~~~-----~~~--~---~~~~~~~~~~~~~~~l~~~l~~l~~~a~~lv~~~~~ia~~~gis~~~iGltlva~gtslP 212 (320)
T 3v5u_A 143 VKNGSA-----EIE--E---NNDKNNPSVVFSLVLLIIGLIGVLVGAELFVDGAKKIALALDISDKVIGFTLVAFGTSLP 212 (320)
T ss_dssp HHHTBC-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTHHHHHTHH
T ss_pred HHhccc-----ccc--c---ccccccccHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHhCCchHHHHHHHHHHHhccH
Confidence 999865 111 1 112234567888999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCcchHHHHHhHHHHHHHHHHHHHHHHHhhcCccccccchhHHHHHHHHHHHHHHHHHcCCccchHHH
Q 013246 326 EHAGAIIFAFKNKLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSLALAIIATAFTLQDGTSHYMKG 405 (447)
Q Consensus 326 E~~~ai~aa~kg~~dlaig~~iGS~i~~~l~vip~~vli~~~~g~~~~l~f~~~~~~~l~lsvll~~~~~~~g~~~~~~G 405 (447)
|+++++.++|||+.|+++||++|||+||.++++|+..++. |++++ .+|...+..+.++..+.++|||++|+||
T Consensus 213 E~~~sv~aa~~g~~~laig~iiGS~ifn~~~v~g~~~li~-----p~~~~--~~d~~~~l~~~~ll~~~~~~~~i~~~eG 285 (320)
T 3v5u_A 213 ELMVSLAAAKRNLGGMVLGNVIGSNIADIGGALAVGSLFM-----HLPAE--NVQMAVLVIMSLLLYLFAKYSKIGRWQG 285 (320)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHHHHHS-----CBCCC--HHHHHHHHHHHHHHHHHHHHSCBSHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHhHHHHHHHHHHHHHHhhc-----cccch--HHHHHHHHHHHHHHHHHHhCCcCcHHHH
Confidence 9999999999999999999999999999999999998875 44443 5666554444444444778999999999
Q ss_pred HHHHHHHHH-HHHHHHH
Q 013246 406 FVLLLCYFV-IGACFFV 421 (447)
Q Consensus 406 ~~Ll~~Y~i-~~~~~~~ 421 (447)
.+|+++|++ |....+.
T Consensus 286 ~~ll~~Y~~~y~~~~~~ 302 (320)
T 3v5u_A 286 ILFLALYIIAIASLRMG 302 (320)
T ss_dssp HHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 999999999 9876553
No 2
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.80 E-value=2e-19 Score=179.37 Aligned_cols=145 Identities=21% Similarity=0.223 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhhcCCCcchhhheehhcccchhhHHHHHHHHHhCCCcchHHHHHhHHHHHHH
Q 013246 276 SGFAWLVGMTAIIALLSEFVVGTIEDASNSWGISVSFISIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAV 355 (447)
Q Consensus 276 ~~i~~L~~~~~li~~~a~~lV~si~~i~~~~gis~~fiGlillpi~tslpE~~~ai~aa~kg~~dlaig~~iGS~i~~~l 355 (447)
..+.+++++.+++..++++++++.+.+++++|+|+.++|+|++|+|||+||+++++.++++|+.|+++||++|||++|.+
T Consensus 4 ~~~~~l~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~nil 83 (320)
T 3v5u_A 4 LGVGYFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIG 83 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCccccccchhHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHccCC
Q 013246 356 FVVPLCVIISWIMGITMDLNFNLLETGSLALAIIATAFTLQDGTSHYMKGFVLLLCYFVIGACFFVSNRP 425 (447)
Q Consensus 356 ~vip~~vli~~~~g~~~~l~f~~~~~~~l~lsvll~~~~~~~g~~~~~~G~~Ll~~Y~i~~~~~~~~~~~ 425 (447)
+++|+..+++++ +++-.+ ..+...+.++.++......|| .+|++|.+|+.+|++|....+.....
T Consensus 84 lvlG~~~li~p~---~v~~~~-~~d~~~~l~~~~~l~~~~~~g-is~~~g~~Ll~~Y~~yl~~~~~~~~~ 148 (320)
T 3v5u_A 84 LVLGLSAIISPI---IVDKNL-QKNILVYLLFVIFAAVIGIDG-FSWIDGVVLLILFIIYLRWTVKNGSA 148 (320)
T ss_dssp THHHHHHHHSCB---CCCHHH-HHHHHHHHHHHHHHHHHTTTC-BCHHHHHHHHHHHHHHHHHHHHHTBC
T ss_pred HHHHHHHHHccc---cccHHH-HHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999998743 221111 223334444444444556788 99999999999999999988776543
No 3
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=21.47 E-value=45 Score=29.52 Aligned_cols=32 Identities=25% Similarity=0.499 Sum_probs=21.5
Q ss_pred HHHhCC-CcchHHHHHhHHHH---HHH---HHHHHHHHH
Q 013246 333 FAFKNK-LDISLGVALGSATQ---IAV---FVVPLCVII 364 (447)
Q Consensus 333 aa~kg~-~dlaig~~iGS~i~---~~l---~vip~~vli 364 (447)
++.||+ +|+|+|+++|++.. +.+ ++.|+..++
T Consensus 31 Fi~RGNViDLAVgVIIGaAF~~IVtSlV~dIImPlIgl~ 69 (174)
T 2oar_A 31 FLARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRI 69 (174)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 455655 59999999999852 222 367776644
No 4
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=13.98 E-value=3.2e+02 Score=22.43 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=32.7
Q ss_pred HHHHHHHhhCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013246 76 PLAIIGQCFGFAE-PWVFALSLLGLTPLAERVSFLTEQIAFYTGP 119 (447)
Q Consensus 76 p~~~~~~~~~~~~-~~~F~~~~l~iipla~~l~~~~e~la~~~G~ 119 (447)
....++-+++.+. .|.+.+..+.++..++.+..+.|.+.++.++
T Consensus 40 ~~i~~~~~l~~s~~e~~~li~~i~lVl~~EllNTAIE~vvD~v~~ 84 (121)
T 2kdc_A 40 LAVVIACWLDVDAITRVLLISSVMLVMIVEILNSAIEAVVDRIGS 84 (121)
T ss_dssp HHHHHHHHCCCCCSHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3333444555543 5777788888999999999999999998773
No 5
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=12.05 E-value=4.8e+02 Score=21.28 Aligned_cols=17 Identities=35% Similarity=0.716 Sum_probs=13.2
Q ss_pred HhCC-CcchHHHHHhHHH
Q 013246 335 FKNK-LDISLGVALGSAT 351 (447)
Q Consensus 335 ~kg~-~dlaig~~iGS~i 351 (447)
.||+ .|+|+|.++|++.
T Consensus 30 ~rGNViDLAVgVIIG~AF 47 (114)
T 3hzq_A 30 LKGNVLDLAIAVVMGAAF 47 (114)
T ss_dssp SCCTTHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHH
Confidence 3444 5999999999984
No 6
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=7.23 E-value=1.2e+03 Score=22.18 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 013246 232 IVMLIGYFAYLVFQLWTHRE 251 (447)
Q Consensus 232 iiLl~~Y~~yl~f~l~th~~ 251 (447)
.+++..++.|.++..+++|+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~ 426 (444)
T 3gia_A 407 ATFIGVLIFEIIYRKVTKRT 426 (444)
T ss_dssp HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHhccCC
Confidence 34444555555544444433
No 7
>3rko_M NADH-quinone oxidoreductase subunit M; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=7.22 E-value=1.5e+03 Score=22.73 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhhh
Q 013246 277 GFAWLVGMTAIIALLSEFVVGTIEDASNS 305 (447)
Q Consensus 277 ~i~~L~~~~~li~~~a~~lV~si~~i~~~ 305 (447)
....+++.++++.+..+.+.+.++..+++
T Consensus 467 ~~~~l~~~~~~lG~~p~~~~~~~~~~~~~ 495 (509)
T 3rko_M 467 MILLLVVLLVLLGFYPQPILDTSHSAIGN 495 (509)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444555555666666666666665543
No 8
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=7.02 E-value=1.5e+02 Score=22.08 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=18.7
Q ss_pred HHHHHHhC--------CcccchhhhhccchhHH
Q 013246 111 EQIAFYTG--------PTVGGLLNATCGNATEL 135 (447)
Q Consensus 111 e~la~~~G--------~~vgGll~a~~gn~pEl 135 (447)
+++.+.+| +|+||++..-+|..|+.
T Consensus 20 ~dl~~~l~~~l~~~~~~Tl~G~i~~~lg~iP~~ 52 (81)
T 3lae_A 20 RDLNKMFNWELDTEDARTFNGLILEHLEEIPDE 52 (81)
T ss_dssp HHHHHHHCCCCCCSSCSBHHHHHHHHCSSCCCT
T ss_pred HHHHHHhCCCCCCCCCccHHHHHHHHhCCCCCC
Confidence 44555555 49999999999988863
No 9
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=6.76 E-value=5.5e+02 Score=16.50 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=15.6
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHH
Q 013246 181 EQKYDRKQADVNSLLLLLALLCHMLPL 207 (447)
Q Consensus 181 ~q~~~~~~a~~~~~ll~lav~~lllP~ 207 (447)
+|......++.|..++++-+++++++.
T Consensus 7 ~q~VELNRTSLy~GLLlifvlavlFss 33 (37)
T 3arc_L 7 RQPVELNRTSLYLGLLLILVLALLFSS 33 (37)
T ss_dssp CCCBCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceechhhHHHHHHHHHHHHHHhhh
Confidence 333333334577777777776666554
No 10
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=6.37 E-value=1.6e+02 Score=22.04 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=0.0
Q ss_pred HHHHHHHhC--------CcccchhhhhccchhH
Q 013246 110 TEQIAFYTG--------PTVGGLLNATCGNATE 134 (447)
Q Consensus 110 ~e~la~~~G--------~~vgGll~a~~gn~pE 134 (447)
.+++.+.+| +|+||++..-+|..|+
T Consensus 19 l~dl~~~l~~~l~~~~~~Tl~G~i~~~lg~iP~ 51 (83)
T 3llb_A 19 VDAFNDFFGSEFSDEEFDTVGGLVMSAFGHLPK 51 (83)
T ss_dssp HHHHHHHHCCCCCTTTCSBHHHHHHHHHSSCCC
T ss_pred HHHHHHHhCCCCCCCCCcCHHHHHHHHhCcCCC
Done!