Query 013246
Match_columns 447
No_of_seqs 318 out of 2080
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 06:58:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013246.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013246hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2oara1 f.16.1.1 (A:10-118) Ga 7.8 37 0.0027 25.8 -0.2 31 334-364 1-37 (109)
2 d2o1ra1 d.145.1.4 (A:1-78) Hyp 7.6 65 0.0047 22.3 1.2 24 111-134 17-48 (78)
3 d2rk5a1 d.145.1.4 (A:5-88) Put 7.1 67 0.0049 22.4 1.0 24 111-134 17-48 (84)
4 d2nwwa1 f.49.1.1 (A:12-416) Pr 6.3 7.6E+02 0.056 21.5 13.3 27 297-325 273-299 (405)
5 d2axtl1 f.23.31.1 (L:1-37) Pho 5.8 3E+02 0.022 16.1 3.5 25 182-206 8-32 (37)
6 d2p3ha1 d.145.1.4 (A:5-102) Un 5.8 82 0.0059 22.9 0.9 17 119-135 36-52 (98)
7 d2plia1 d.145.1.4 (A:5-88) Unc 5.6 91 0.0067 21.8 1.0 25 111-135 22-54 (84)
8 d2r2za1 d.145.1.4 (A:5-88) Put 5.4 90 0.0066 21.8 0.8 25 111-135 20-52 (84)
9 d2r6gf1 e.70.1.1 (F:13-260) Ma 5.1 6.1E+02 0.045 21.1 6.7 36 385-420 35-74 (248)
10 d2nqwa1 d.145.1.4 (A:4-90) Hyp 3.8 1.3E+02 0.0098 20.9 0.8 16 119-134 41-56 (87)
No 1
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=7.83 E-value=37 Score=25.76 Aligned_cols=31 Identities=29% Similarity=0.419 Sum_probs=21.1
Q ss_pred HHhCCCcchHHHHHhHHHHH---H---HHHHHHHHHH
Q 013246 334 AFKNKLDISLGVALGSATQI---A---VFVVPLCVII 364 (447)
Q Consensus 334 a~kg~~dlaig~~iGS~i~~---~---l~vip~~vli 364 (447)
||.|-+|+|+|.++|+.... . -++.|+...+
T Consensus 1 arGNVidLAVgvIiG~AF~~iV~slV~diimPlIg~i 37 (109)
T d2oara1 1 ARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRI 37 (109)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhhc
Confidence 45556799999999998532 2 2467776655
No 2
>d2o1ra1 d.145.1.4 (A:1-78) Hypothetical protein HI0107 {Haemophilus influenzae [TaxId: 727]}
Probab=7.65 E-value=65 Score=22.31 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=19.0
Q ss_pred HHHHHHhC--------CcccchhhhhccchhH
Q 013246 111 EQIAFYTG--------PTVGGLLNATCGNATE 134 (447)
Q Consensus 111 e~la~~~G--------~~vgGll~a~~gn~pE 134 (447)
+++.+++| +|+||+++--+|..||
T Consensus 17 ~dl~~~l~~~l~~~~~~Ti~G~v~~~lg~iP~ 48 (78)
T d2o1ra1 17 RDLNKMFNWELDTEDARTFNGLILEHLEEIPD 48 (78)
T ss_dssp HHHHHHHCCCCCCSSCSBHHHHHHHHCSSCCC
T ss_pred HHHHHHHCCCCCCccchHHHHHHHHHhCcCCC
Confidence 55666665 5899999999998886
No 3
>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Streptococcus mutans [TaxId: 1309]}
Probab=7.14 E-value=67 Score=22.44 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=18.3
Q ss_pred HHHHHHhC--------CcccchhhhhccchhH
Q 013246 111 EQIAFYTG--------PTVGGLLNATCGNATE 134 (447)
Q Consensus 111 e~la~~~G--------~~vgGll~a~~gn~pE 134 (447)
+++.+++| +|+||++.--+|..|+
T Consensus 17 ~dl~~~l~~~l~~~~~dTlgG~v~~~lg~iP~ 48 (84)
T d2rk5a1 17 NDFNEYFETDLESDNVDTIAGFYLTGVGTIPS 48 (84)
T ss_dssp HHHHHHHTCCCCCTTCCBHHHHHHHHHCSCCC
T ss_pred HHHHHHhCCCcccccchhHHHHHHHHhCcCCC
Confidence 45555555 5999999999998885
No 4
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=6.28 E-value=7.6e+02 Score=21.50 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=19.9
Q ss_pred hhHHHhhhhcCCCcchhhheehhcccchh
Q 013246 297 GTIEDASNSWGISVSFISIILLPIVGNAA 325 (447)
Q Consensus 297 ~si~~i~~~~gis~~fiGlillpi~tslp 325 (447)
-+++. +|+.|+++...+.+ +|+|.+..
T Consensus 273 ~~~~~-~~~~gv~~~i~~fv-lPlgatin 299 (405)
T d2nwwa1 273 VTMRV-AKEMGISEGIYSFT-LPLGATIN 299 (405)
T ss_dssp HHHHH-HHTTTCCTTTHHHH-TTTTSSSC
T ss_pred HHHHH-HHHcCCCcccccee-cccchhee
Confidence 34454 47799999998887 58887763
No 5
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.76 E-value=3e+02 Score=16.12 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=13.9
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHH
Q 013246 182 QKYDRKQADVNSLLLLLALLCHMLP 206 (447)
Q Consensus 182 q~~~~~~a~~~~~ll~lav~~lllP 206 (447)
|......++.+..++++-++..++.
T Consensus 8 q~veLNrtsLy~GlLlifvl~vLFs 32 (37)
T d2axtl1 8 QPVELNRTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp CCBCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhhHHHHHHHHHHHHHHHH
Confidence 3333333457777777666665543
No 6
>d2p3ha1 d.145.1.4 (A:5-102) Uncharacterized protein Cgl1194/Cg1349 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=5.75 E-value=82 Score=22.95 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.5
Q ss_pred CcccchhhhhccchhHH
Q 013246 119 PTVGGLLNATCGNATEL 135 (447)
Q Consensus 119 ~~vgGll~a~~gn~pEl 135 (447)
+|+||+++.-+|..|+-
T Consensus 36 ~Tl~G~~~~~lg~iP~~ 52 (98)
T d2p3ha1 36 ETISGLLFDHANALLKT 52 (98)
T ss_dssp CBHHHHHHHHHCSCCCT
T ss_pred cCHHHHHHHHHCcCCCC
Confidence 58999999999988863
No 7
>d2plia1 d.145.1.4 (A:5-88) Uncharacterized protein NMB0537 {Neisseria meningitidis [TaxId: 487]}
Probab=5.62 E-value=91 Score=21.83 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=18.9
Q ss_pred HHHHHHhC--------CcccchhhhhccchhHH
Q 013246 111 EQIAFYTG--------PTVGGLLNATCGNATEL 135 (447)
Q Consensus 111 e~la~~~G--------~~vgGll~a~~gn~pEl 135 (447)
+++.+.+| +|+||++.--+|..|+.
T Consensus 22 ~dl~~~~~~~l~~~~~~TigG~i~~~l~~iP~~ 54 (84)
T d2plia1 22 EDINTFFGTEYSSEEADTIGGLVIQELGHLPVR 54 (84)
T ss_dssp HHHHHHHCCCCCCSSCCBHHHHHHHHHSSCCCT
T ss_pred HHHHHHhCCCCCccccHHHHHHHHHHhCccccC
Confidence 45666666 48999999988888863
No 8
>d2r2za1 d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Enterococcus faecalis [TaxId: 1351]}
Probab=5.35 E-value=90 Score=21.81 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=18.3
Q ss_pred HHHHHHhC--------CcccchhhhhccchhHH
Q 013246 111 EQIAFYTG--------PTVGGLLNATCGNATEL 135 (447)
Q Consensus 111 e~la~~~G--------~~vgGll~a~~gn~pEl 135 (447)
+++.+++| +|+||++.--+|..|+.
T Consensus 20 ~dl~~~l~~~l~~~~~~TigG~i~~~lg~iP~~ 52 (84)
T d2r2za1 20 DEFNEVFETDLHMSDVDTMAGYLITALGTIPDE 52 (84)
T ss_dssp HHHHHHHTCCCCCTTCCBHHHHHHHHHSSCCCT
T ss_pred HHHHHHHCcCCCCccchhHHHHHHHHhCcCCCC
Confidence 44555555 58999999888888864
No 9
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.10 E-value=6.1e+02 Score=21.06 Aligned_cols=36 Identities=6% Similarity=0.034 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCccch----HHHHHHHHHHHHHHHHHH
Q 013246 385 ALAIIATAFTLQDGTSHY----MKGFVLLLCYFVIGACFF 420 (447)
Q Consensus 385 ~lsvll~~~~~~~g~~~~----~~G~~Ll~~Y~i~~~~~~ 420 (447)
++.+++.++++...|.-. .-|++++.+|.+|-+.+=
T Consensus 35 ~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fvi~Pi~yT 74 (248)
T d2r6gf1 35 LILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLFPLVCT 74 (248)
T ss_dssp HHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHheEEEEEccCccceehhhhHHHHHHHHHHHhheeE
Confidence 334445566654444332 368999999999876543
No 10
>d2nqwa1 d.145.1.4 (A:4-90) Hypothetical protein PG0272 {Porphyromonas gingivalis [TaxId: 837]}
Probab=3.80 E-value=1.3e+02 Score=20.86 Aligned_cols=16 Identities=19% Similarity=0.198 Sum_probs=13.7
Q ss_pred CcccchhhhhccchhH
Q 013246 119 PTVGGLLNATCGNATE 134 (447)
Q Consensus 119 ~~vgGll~a~~gn~pE 134 (447)
+|+||+++--+|.+||
T Consensus 41 ~Ti~G~i~~~lg~iP~ 56 (87)
T d2nqwa1 41 DTLSGLFLEIKQELPH 56 (87)
T ss_dssp SBHHHHHHHHHCSCCC
T ss_pred eeHHHHHHHHhCcccc
Confidence 5899999988888886
Done!