BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013250
         (447 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6GLA1|MSD4_XENTR Myb/SANT-like DNA-binding domain-containing protein 4 OS=Xenopus
           tropicalis GN=msantd4 PE=2 SV=1
          Length = 408

 Score = 40.8 bits (94), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 55/87 (63%), Gaps = 11/87 (12%)

Query: 349 IKKQKLALQNQRVSIQAQAFELEKQHLKW----LRYCSKKDRELERSRLENERIRLDNEQ 404
           ++KQKL L+ QR+SI+A+  ++EK+ L+     LR+    D E ER +LE ER++++ E+
Sbjct: 241 LEKQKLELERQRLSIEAERLQVEKERLQIERERLRHL---DMEHERLQLEKERLQIEREK 297

Query: 405 M---ILHLKQKQFELDLRKTE-VSLEP 427
           +   ++H ++   E D  ++E   L+P
Sbjct: 298 LRLQVMHAEKPNLENDFAQSEKTVLQP 324


>sp|Q2KJB9|MSD4_BOVIN Myb/SANT-like DNA-binding domain-containing protein 4 OS=Bos taurus
           GN=MSANTD4 PE=2 SV=1
          Length = 345

 Score = 37.7 bits (86), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 10/79 (12%)

Query: 338 PSKSMWERREW---IKKQKLALQNQRVSIQAQAFELEKQHLKW----LRYCSKKDRELER 390
           PS+S ++       I+KQKL L+ +R+ I+A+  ++EK+ L+     LR+    D E ER
Sbjct: 193 PSRSAYDEPHLLVNIEKQKLELEKRRLDIEAERLQVEKERLQIEKERLRHL---DMEHER 249

Query: 391 SRLENERIRLDNEQMILHL 409
            +LE ER++++ E++ L +
Sbjct: 250 LQLEKERLQIEREKLRLQI 268


>sp|Q8NCY6|MSD4_HUMAN Myb/SANT-like DNA-binding domain-containing protein 4 OS=Homo
           sapiens GN=MSANTD4 PE=1 SV=1
          Length = 345

 Score = 37.4 bits (85), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 10/79 (12%)

Query: 338 PSKSMWERREW---IKKQKLALQNQRVSIQAQAFELEKQHLKW----LRYCSKKDRELER 390
           PS+S ++       I+KQKL L+ +R+ I+A+  ++EK+ L+     LR+    D E ER
Sbjct: 193 PSRSAYDEPHLLVNIEKQKLELEKRRLDIEAERLQVEKERLQIEKERLRHL---DMEHER 249

Query: 391 SRLENERIRLDNEQMILHL 409
            +LE ER++++ E++ L +
Sbjct: 250 LQLEKERLQIEREKLRLQI 268


>sp|Q501L3|MSD4_RAT Myb/SANT-like DNA-binding domain-containing protein 4 OS=Rattus
           norvegicus GN=Msantd4 PE=2 SV=1
          Length = 345

 Score = 36.2 bits (82), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 7/65 (10%)

Query: 349 IKKQKLALQNQRVSIQAQAFELEKQHLKW----LRYCSKKDRELERSRLENERIRLDNEQ 404
           I+KQKL L+ +R+ I+A+  ++EK+ L+     LR+    D E ER +LE ER++++ E+
Sbjct: 207 IEKQKLELEKRRLDIEAERLQVEKERLQIEKERLRHL---DLEHERLQLEKERLQIEREK 263

Query: 405 MILHL 409
             L L
Sbjct: 264 WRLQL 268


>sp|Q91YU3|MSD4_MOUSE Myb/SANT-like DNA-binding domain-containing protein 4 OS=Mus
           musculus GN=Msantd4 PE=2 SV=1
          Length = 345

 Score = 35.8 bits (81), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 7/65 (10%)

Query: 349 IKKQKLALQNQRVSIQAQAFELEKQHLKW----LRYCSKKDRELERSRLENERIRLDNEQ 404
           I+KQKL L+ +R+ I+A+  ++EK+ L+     LR+    D E ER +LE ER++++ E+
Sbjct: 207 IEKQKLELEKRRLDIEAERLQVEKERLQIEKERLRHL---DLEHERLQLEKERLQIEREK 263

Query: 405 MILHL 409
             L L
Sbjct: 264 WRLQL 268


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.132    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 184,759,276
Number of Sequences: 539616
Number of extensions: 8867601
Number of successful extensions: 90252
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 755
Number of HSP's that attempted gapping in prelim test: 59727
Number of HSP's gapped (non-prelim): 18071
length of query: 447
length of database: 191,569,459
effective HSP length: 121
effective length of query: 326
effective length of database: 126,275,923
effective search space: 41165950898
effective search space used: 41165950898
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)