Query 013250
Match_columns 447
No_of_seqs 64 out of 66
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 01:56:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013250.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013250hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13837 Myb_DNA-bind_4: Myb/S 99.4 4.6E-14 1E-18 111.3 1.1 80 122-210 1-83 (90)
2 KOG4282 Transcription factor G 98.9 8.8E-08 1.9E-12 93.7 16.0 69 122-201 54-122 (345)
3 PF00249 Myb_DNA-binding: Myb- 97.3 0.00046 9.9E-09 50.4 4.6 47 122-191 1-47 (48)
4 smart00717 SANT SANT SWI3, AD 96.7 0.0021 4.5E-08 44.1 3.6 47 123-193 2-48 (49)
5 PF12776 Myb_DNA-bind_3: Myb/S 96.7 0.0066 1.4E-07 48.7 6.9 84 124-215 1-91 (96)
6 PF13921 Myb_DNA-bind_6: Myb-l 96.5 0.0029 6.2E-08 47.5 3.4 43 125-192 1-44 (60)
7 cd00167 SANT 'SWI3, ADA2, N-Co 96.2 0.0099 2.1E-07 40.3 4.3 44 124-191 1-44 (45)
8 PF13873 Myb_DNA-bind_5: Myb/S 92.7 0.21 4.5E-06 39.3 4.5 70 124-197 4-74 (78)
9 KOG4661 Hsp27-ERE-TATA-binding 91.0 0.52 1.1E-05 52.1 6.7 60 174-246 405-471 (940)
10 PF10545 MADF_DNA_bdg: Alcohol 89.7 0.61 1.3E-05 35.9 4.4 40 160-202 24-63 (85)
11 smart00595 MADF subfamily of S 87.2 0.7 1.5E-05 36.8 3.3 35 162-201 27-61 (89)
12 TIGR01557 myb_SHAQKYF myb-like 87.1 0.95 2.1E-05 35.6 3.9 44 121-186 2-48 (57)
13 KOG4661 Hsp27-ERE-TATA-binding 81.2 3.7 8.1E-05 45.8 6.6 17 388-404 670-686 (940)
14 PLN03212 Transcription repress 79.2 2.8 6E-05 42.0 4.5 48 121-191 24-71 (249)
15 PLN03091 hypothetical protein; 69.9 5.8 0.00013 42.7 4.4 47 121-190 13-59 (459)
16 PLN03091 hypothetical protein; 69.2 7.6 0.00016 41.9 5.0 51 124-199 69-119 (459)
17 PF06524 NOA36: NOA36 protein; 69.1 2.7 5.8E-05 42.9 1.6 9 241-249 232-240 (314)
18 PF06524 NOA36: NOA36 protein; 64.2 3.8 8.3E-05 41.8 1.6 10 206-215 162-171 (314)
19 PLN03212 Transcription repress 63.6 12 0.00027 37.5 5.0 47 124-195 80-126 (249)
20 KOG1832 HIV-1 Vpr-binding prot 61.3 4.2 9.1E-05 47.5 1.5 12 192-203 1260-1271(1516)
21 KOG4739 Uncharacterized protei 54.7 46 0.00099 33.3 7.1 79 350-431 97-175 (233)
22 PF06156 DUF972: Protein of un 54.5 59 0.0013 28.6 7.1 52 349-414 6-57 (107)
23 PF14739 DUF4472: Domain of un 54.1 23 0.0005 31.7 4.5 51 357-412 2-52 (108)
24 PF10045 DUF2280: Uncharacteri 52.4 18 0.00039 32.3 3.6 20 167-186 25-44 (104)
25 PF09356 Phage_BR0599: Phage c 51.5 6.2 0.00013 32.7 0.6 20 174-193 50-69 (80)
26 KOG1492 C3H1-type Zn-finger pr 50.2 4.2 9.1E-05 41.1 -0.7 37 170-215 195-231 (377)
27 KOG1029 Endocytic adaptor prot 44.4 52 0.0011 38.4 6.4 16 14-29 109-124 (1118)
28 COG5665 NOT5 CCR4-NOT transcri 43.1 33 0.00072 37.1 4.5 51 345-406 113-163 (548)
29 PF04931 DNA_pol_phi: DNA poly 42.5 12 0.00027 41.6 1.3 22 178-199 546-567 (784)
30 KOG0943 Predicted ubiquitin-pr 42.0 12 0.00027 45.2 1.3 14 208-221 1597-1614(3015)
31 PF04931 DNA_pol_phi: DNA poly 38.5 17 0.00036 40.7 1.5 11 122-132 472-482 (784)
32 PTZ00266 NIMA-related protein 36.2 93 0.002 36.8 7.0 19 225-245 281-299 (1021)
33 PRK13169 DNA replication intia 35.3 1E+02 0.0022 27.5 5.7 49 349-411 6-54 (110)
34 PF03066 Nucleoplasmin: Nucleo 34.4 13 0.00029 34.1 0.0 8 225-232 39-46 (149)
35 KOG1832 HIV-1 Vpr-binding prot 34.0 21 0.00045 42.2 1.4 8 207-214 1304-1311(1516)
36 KOG0993 Rab5 GTPase effector R 33.8 50 0.0011 36.0 4.1 61 344-404 75-143 (542)
37 KOG3915 Transcription regulato 31.0 94 0.002 34.5 5.5 37 354-390 519-555 (641)
38 KOG1279 Chromatin remodeling f 30.8 50 0.0011 36.2 3.5 44 123-191 254-297 (506)
39 KOG0943 Predicted ubiquitin-pr 29.5 25 0.00054 42.9 1.1 10 125-134 1482-1491(3015)
40 PF00435 Spectrin: Spectrin re 29.5 98 0.0021 23.5 4.1 34 168-202 63-96 (105)
41 PF03871 RNA_pol_Rpb5_N: RNA p 29.0 6.8 0.00015 33.1 -2.6 32 165-196 14-45 (93)
42 KOG1029 Endocytic adaptor prot 26.3 1.4E+02 0.0029 35.3 6.0 12 252-263 263-274 (1118)
43 PF13280 WYL: WYL domain 25.8 42 0.00092 28.3 1.6 32 197-237 141-172 (172)
44 PTZ00266 NIMA-related protein 24.7 2.1E+02 0.0046 34.1 7.3 14 225-238 267-280 (1021)
45 PF08595 RXT2_N: RXT2-like, N- 24.4 22 0.00049 33.0 -0.3 21 238-259 22-43 (149)
46 PF08232 Striatin: Striatin fa 23.8 64 0.0014 29.1 2.4 49 375-423 14-67 (134)
47 KOG3130 Uncharacterized conser 23.7 50 0.0011 35.9 2.0 20 184-203 175-194 (514)
48 PRK09282 pyruvate carboxylase 22.3 43 0.00093 36.9 1.3 46 169-221 305-354 (592)
49 PF15387 DUF4611: Domain of un 21.9 45 0.00097 29.6 1.0 11 228-238 37-47 (96)
50 PF05086 Dicty_REP: Dictyostel 21.9 39 0.00084 39.1 0.8 14 182-195 851-864 (911)
51 PLN03162 golden-2 like transcr 21.4 1.7E+02 0.0036 31.9 5.2 23 121-143 236-258 (526)
52 KOG4196 bZIP transcription fac 20.6 2.4E+02 0.0053 26.4 5.5 13 325-337 31-43 (135)
53 KOG0051 RNA polymerase I termi 20.3 1.2E+02 0.0026 34.2 4.0 70 122-195 436-510 (607)
54 PF08549 SWI-SNF_Ssr4: Fungal 20.2 75 0.0016 36.1 2.5 59 379-439 364-429 (669)
No 1
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=99.41 E-value=4.6e-14 Score=111.32 Aligned_cols=80 Identities=31% Similarity=0.536 Sum_probs=52.0
Q ss_pred cccchhHHHHHHHHHHHh--hcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHHHHHH
Q 013250 122 RMKWTDNVVRLLIAAVAC--VGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLN 199 (447)
Q Consensus 122 RmkWtd~mvkllI~~v~~--~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRYKRln 199 (447)
|.+||+.+|.+||.++.. +..-++. ++.+++ +-.|+.|+..|.+.||.+||.||.+||++|.++|+++.
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~---~~~~~~------~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k 71 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDN---GGKKRN------KKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIK 71 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH-----SS--------HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhh---hccccc------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999988 2221211 111333 56899999999999999999999999999999999999
Q ss_pred Hhh-cCCcceee
Q 013250 200 DIL-GKGLTCQV 210 (447)
Q Consensus 200 DiL-GRGtaC~V 210 (447)
+.. +.|++|..
T Consensus 72 ~~~~~~~~~w~~ 83 (90)
T PF13837_consen 72 DRNKKSGSSWPY 83 (90)
T ss_dssp SSSS----S---
T ss_pred hcCCCCCCcCcC
Confidence 875 55655553
No 2
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=98.85 E-value=8.8e-08 Score=93.71 Aligned_cols=69 Identities=29% Similarity=0.459 Sum_probs=59.5
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHHHHHHHh
Q 013250 122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDI 201 (447)
Q Consensus 122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRYKRlnDi 201 (447)
...|+..+|+.||-|...+...+.- + ++| .-.|+-||++|.+.||.+||.||..||.+|.|+||+-..-
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~----~-~~k------~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~ 122 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRR----G-KLK------GPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAK 122 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh----h-hhc------ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 6899999999999999955444433 2 555 7889999999999999999999999999999999997653
No 3
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.28 E-value=0.00046 Score=50.44 Aligned_cols=47 Identities=32% Similarity=0.622 Sum_probs=40.2
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhH
Q 013250 122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDL 191 (447)
Q Consensus 122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndL 191 (447)
|..||..+..+|+.||...|.+ .|+.|+..|. ..+|+.||..+|.++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~--------------------~W~~Ia~~~~---~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKD--------------------NWKKIAKRMP---GGRTAKQCRSRYQNL 47 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTT--------------------HHHHHHHHHS---SSSTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCc--------------------HHHHHHHHcC---CCCCHHHHHHHHHhh
Confidence 5789999999999999988754 7999999998 778999999999875
No 4
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=96.70 E-value=0.0021 Score=44.11 Aligned_cols=47 Identities=30% Similarity=0.614 Sum_probs=40.3
Q ss_pred ccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHH
Q 013250 123 MKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNK 193 (447)
Q Consensus 123 mkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnk 193 (447)
-.||..+..+|+.++...|. ..|+.|+..|. ..||.+|..+|+.+.+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~--------------------~~w~~Ia~~~~----~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGK--------------------NNWEKIAKELP----GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCc--------------------CCHHHHHHHcC----CCCHHHHHHHHHHHcC
Confidence 46999999999999987654 56999999996 7899999999987754
No 5
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=96.68 E-value=0.0066 Score=48.71 Aligned_cols=84 Identities=19% Similarity=0.393 Sum_probs=62.6
Q ss_pred cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhc-ccccChhhhhhhhhhHHHHHHHHHHhh
Q 013250 124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISR-GCQVSPQQCEDKFNDLNKRYKKLNDIL 202 (447)
Q Consensus 124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ek-G~~vSpqQCedKfndLnkRYKRlnDiL 202 (447)
+||+.+++.||.+...-=.++.-. ..+.+ |+.-|..|...|.++ |..++..||+.||+.|-+.|+.+..|+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~-------~~~~f-k~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~~l~ 72 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRP-------TNGGF-KKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWKELR 72 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCC-------CCCCc-CHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999998876543332221 12222 256799999999885 667789999999999999999999999
Q ss_pred cCCc------ceeeecCch
Q 013250 203 GKGL------TCQVVENPA 215 (447)
Q Consensus 203 GRGt------aC~VVENpa 215 (447)
+..+ +|.|+..++
T Consensus 73 ~~sg~gwd~~~~~i~a~~e 91 (96)
T PF12776_consen 73 NHSGFGWDPETGMITADDE 91 (96)
T ss_pred cCCCceEcCCCCeEECCHH
Confidence 9876 455555444
No 6
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=96.50 E-value=0.0029 Score=47.51 Aligned_cols=43 Identities=28% Similarity=0.697 Sum_probs=34.0
Q ss_pred chhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhh-HH
Q 013250 125 WTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFND-LN 192 (447)
Q Consensus 125 Wtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfnd-Ln 192 (447)
||..+..+|+.+|...|. .|+.|++.|. .+||.||.++|+. |+
T Consensus 1 WT~eEd~~L~~~~~~~g~---------------------~W~~Ia~~l~----~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN---------------------DWKKIAEHLG----NRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS----------------------HHHHHHHST----TS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHCc---------------------CHHHHHHHHC----cCCHHHHHHHHHHHCc
Confidence 999999999999875321 5999999984 8999999999988 63
No 7
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=96.16 E-value=0.0099 Score=40.32 Aligned_cols=44 Identities=30% Similarity=0.723 Sum_probs=37.6
Q ss_pred cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhH
Q 013250 124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDL 191 (447)
Q Consensus 124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndL 191 (447)
.||..+.++|+.++...|. +.|+.|++.|.. +|+.||..+|+.+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~--------------------~~w~~Ia~~~~~----rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK--------------------NNWEKIAKELPG----RTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc--------------------CCHHHHHhHcCC----CCHHHHHHHHHHh
Confidence 4999999999999986653 569999999965 7999999998765
No 8
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=92.70 E-value=0.21 Score=39.32 Aligned_cols=70 Identities=17% Similarity=0.270 Sum_probs=50.0
Q ss_pred cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhccc-ccChhhhhhhhhhHHHHHHH
Q 013250 124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGC-QVSPQQCEDKFNDLNKRYKK 197 (447)
Q Consensus 124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~-~vSpqQCedKfndLnkRYKR 197 (447)
.||..+..+||..|.. ....--+ ..........|...|..|+..+...|. ..|+.||..+|.||-..=|+
T Consensus 4 ~fs~~E~~~Lv~~v~~---~~~il~~-k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk 74 (78)
T PF13873_consen 4 NFSEEEKEILVELVEK---HKDILEN-KFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK 74 (78)
T ss_pred CCCHHHHHHHHHHHHH---hHHHHhc-ccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5889999998876542 1111100 001123455678999999999999888 89999999999999877665
No 9
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=91.01 E-value=0.52 Score=52.13 Aligned_cols=60 Identities=28% Similarity=0.389 Sum_probs=35.8
Q ss_pred hcccccChhhhhhhhhhHHHHHHHHHHhhcCCcceeeecCchh-------hcccCcccCChhhHHHHHhhhcccchhHHH
Q 013250 174 SRGCQVSPQQCEDKFNDLNKRYKKLNDILGKGLTCQVVENPAL-------IDTMSCSHLSAKAKDDVRKILGSKHLFYKE 246 (447)
Q Consensus 174 ekG~~vSpqQCedKfndLnkRYKRlnDiLGRGtaC~VVENpaL-------LD~md~~~LS~K~KdevRKiLsSKHLFyeE 246 (447)
.+.|-||---.--.-.||.+.|-+.-.++| ..||-|--- .=+|. .-+||-|-++ ||+--|
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvG----AKVVTNaRsPGaRCYGfVTMS-------ts~eAtkCI~--hLHrTE 471 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVG----AKVVTNARSPGARCYGFVTMS-------TSAEATKCIE--HLHRTE 471 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceec----eeeeecCCCCCcceeEEEEec-------chHHHHHHHH--Hhhhhh
Confidence 455666665555566677777776655555 467766432 12444 3467777765 666555
No 10
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=89.75 E-value=0.61 Score=35.85 Aligned_cols=40 Identities=18% Similarity=0.601 Sum_probs=33.5
Q ss_pred hhccchhHHHHHHhhcccccChhhhhhhhhhHHHHHHHHHHhh
Q 013250 160 QKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDIL 202 (447)
Q Consensus 160 QKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRYKRlnDiL 202 (447)
.|.-.|..|+..| |..++++.|..+|+.|..+|.|.-.-+
T Consensus 24 ~r~~aw~~Ia~~l---~~~~~~~~~~~~w~~Lr~~y~~~~~~~ 63 (85)
T PF10545_consen 24 LREEAWQEIAREL---GKEFSVDDCKKRWKNLRDRYRRELKKI 63 (85)
T ss_pred HHHHHHHHHHHHH---ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999 666889999999999999998765433
No 11
>smart00595 MADF subfamily of SANT domain.
Probab=87.17 E-value=0.7 Score=36.79 Aligned_cols=35 Identities=17% Similarity=0.541 Sum_probs=30.6
Q ss_pred ccchhHHHHHHhhcccccChhhhhhhhhhHHHHHHHHHHh
Q 013250 162 KGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDI 201 (447)
Q Consensus 162 KgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRYKRlnDi 201 (447)
.-.|..|+..|.. ++..|..||+.|--+|.|..--
T Consensus 27 ~~aW~~Ia~~l~~-----~~~~~~~kw~~LR~~y~~e~~r 61 (89)
T smart00595 27 RKAWEEIAEELGL-----SVEECKKRWKNLRDRYRRELKR 61 (89)
T ss_pred HHHHHHHHHHHCc-----CHHHHHHHHHHHHHHHHHHHHH
Confidence 4489999999966 9999999999999999987543
No 12
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=87.14 E-value=0.95 Score=35.55 Aligned_cols=44 Identities=23% Similarity=0.539 Sum_probs=34.2
Q ss_pred ccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccch---hHHHHHHhhcccccChhhhhh
Q 013250 121 HRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKW---KTVSKIMISRGCQVSPQQCED 186 (447)
Q Consensus 121 ~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkW---k~vs~~M~ekG~~vSpqQCed 186 (447)
.|+-||+.+-..|+.|+..+|. |.| +.|+..|... .+|+.||.-
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~--------------------g~~a~pk~I~~~~~~~--~lT~~qV~S 48 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGG--------------------PDWATPKRILELMVVD--GLTRDQVAS 48 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCC--------------------CcccchHHHHHHcCCC--CCCHHHHHH
Confidence 4899999999999999999853 446 6677777642 359999875
No 13
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=81.22 E-value=3.7 Score=45.81 Aligned_cols=17 Identities=47% Similarity=0.939 Sum_probs=8.4
Q ss_pred HHHhhhhhhhhhhhhhh
Q 013250 388 LERSRLENERIRLDNEQ 404 (447)
Q Consensus 388 lEk~rLENERmrLENER 404 (447)
||+-|||.|||++|.+|
T Consensus 670 mErERLEreRM~ve~eR 686 (940)
T KOG4661|consen 670 MERERLERERMKVEEER 686 (940)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 44445555555555443
No 14
>PLN03212 Transcription repressor MYB5; Provisional
Probab=79.20 E-value=2.8 Score=41.97 Aligned_cols=48 Identities=21% Similarity=0.500 Sum_probs=38.2
Q ss_pred ccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhH
Q 013250 121 HRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDL 191 (447)
Q Consensus 121 ~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndL 191 (447)
.|..||..+=.+|+.+|...| ...|+.|++.| |..+++.||-..|.+.
T Consensus 24 KRg~WT~EEDe~L~~lV~kyG--------------------~~nW~~IAk~~---g~gRT~KQCReRW~N~ 71 (249)
T PLN03212 24 KRGPWTVEEDEILVSFIKKEG--------------------EGRWRSLPKRA---GLLRCGKSCRLRWMNY 71 (249)
T ss_pred cCCCCCHHHHHHHHHHHHHhC--------------------cccHHHHHHhh---hcCCCcchHHHHHHHh
Confidence 377899999999999887542 24699999876 4668999999988754
No 15
>PLN03091 hypothetical protein; Provisional
Probab=69.94 E-value=5.8 Score=42.72 Aligned_cols=47 Identities=21% Similarity=0.449 Sum_probs=37.5
Q ss_pred ccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhh
Q 013250 121 HRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFND 190 (447)
Q Consensus 121 ~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfnd 190 (447)
.|-+||-.+=.+|+.+|...| .+.|+.|++.| |..+++.||-+.|++
T Consensus 13 rKg~WTpEEDe~L~~~V~kyG--------------------~~nWs~IAk~~---g~gRT~KQCRERW~N 59 (459)
T PLN03091 13 RKGLWSPEEDEKLLRHITKYG--------------------HGCWSSVPKQA---GLQRCGKSCRLRWIN 59 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhC--------------------cCCHHHHhhhh---ccCcCcchHhHHHHh
Confidence 355799999999999987442 24699999876 467899999998874
No 16
>PLN03091 hypothetical protein; Provisional
Probab=69.22 E-value=7.6 Score=41.87 Aligned_cols=51 Identities=14% Similarity=0.316 Sum_probs=42.7
Q ss_pred cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHHHHHH
Q 013250 124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLN 199 (447)
Q Consensus 124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRYKRln 199 (447)
.||..+-++||..+..+| .+|..|++.|- -+|..||+..|+.+-|+|.|-.
T Consensus 69 pWT~EED~lLLeL~k~~G---------------------nKWskIAk~LP----GRTDnqIKNRWnslLKKklr~~ 119 (459)
T PLN03091 69 TFSQQEENLIIELHAVLG---------------------NRWSQIAAQLP----GRTDNEIKNLWNSCLKKKLRQR 119 (459)
T ss_pred CCCHHHHHHHHHHHHHhC---------------------cchHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHc
Confidence 599999999998887653 37999999984 4689999999999999887643
No 17
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=69.08 E-value=2.7 Score=42.92 Aligned_cols=9 Identities=22% Similarity=0.213 Sum_probs=3.6
Q ss_pred chhHHHHhh
Q 013250 241 HLFYKEMFA 249 (447)
Q Consensus 241 HLFyeEMCs 249 (447)
|-|=|...+
T Consensus 232 hkyGRQ~~~ 240 (314)
T PF06524_consen 232 HKYGRQGQA 240 (314)
T ss_pred chhccccCC
Confidence 444444333
No 18
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=64.16 E-value=3.8 Score=41.84 Aligned_cols=10 Identities=40% Similarity=0.810 Sum_probs=5.5
Q ss_pred cceeeecCch
Q 013250 206 LTCQVVENPA 215 (447)
Q Consensus 206 taC~VVENpa 215 (447)
.+|||+|...
T Consensus 162 AsCQvLe~E~ 171 (314)
T PF06524_consen 162 ASCQVLESET 171 (314)
T ss_pred hhhhhhhccc
Confidence 4566665543
No 19
>PLN03212 Transcription repressor MYB5; Provisional
Probab=63.59 E-value=12 Score=37.53 Aligned_cols=47 Identities=11% Similarity=0.247 Sum_probs=37.5
Q ss_pred cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHH
Q 013250 124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRY 195 (447)
Q Consensus 124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRY 195 (447)
.||..+-.+||..+..+| .+|..|++.|.. +|..||...|+.+-+++
T Consensus 80 pWT~EED~lLlel~~~~G---------------------nKWs~IAk~LpG----RTDnqIKNRWns~LrK~ 126 (249)
T PLN03212 80 GITSDEEDLILRLHRLLG---------------------NRWSLIAGRIPG----RTDNEIKNYWNTHLRKK 126 (249)
T ss_pred CCChHHHHHHHHHHHhcc---------------------ccHHHHHhhcCC----CCHHHHHHHHHHHHhHH
Confidence 688999998888876542 369999999943 78999999999866554
No 20
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=61.34 E-value=4.2 Score=47.50 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=7.8
Q ss_pred HHHHHHHHHhhc
Q 013250 192 NKRYKKLNDILG 203 (447)
Q Consensus 192 nkRYKRlnDiLG 203 (447)
..||-|+|+-+|
T Consensus 1260 Ih~FD~ft~~~~ 1271 (1516)
T KOG1832|consen 1260 IHRFDQFTDYGG 1271 (1516)
T ss_pred Hhhhhhheeccc
Confidence 457778885444
No 21
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=54.69 E-value=46 Score=33.26 Aligned_cols=79 Identities=19% Similarity=0.086 Sum_probs=43.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhhhHHhhhchhhhHHHHhhhhhhhhhhhhhhhhhhhccccccccccccccccCCCC
Q 013250 350 KKQKLALQNQRVSIQAQAFELEKQHLKWLRYCSKKDRELERSRLENERIRLDNEQMILHLKQKQFELDLRKTEVSLEPTS 429 (447)
Q Consensus 350 ~~r~LQLEEQrlqIq~q~leLekQRlKWerf~~KKdRElEk~rLENERmrLENERm~Lelr~KELEL~lK~~e~~l~p~~ 429 (447)
..++....+|....++...++..|..|-++|-.-....++.. |++..++|+.++++|++..-+- .+|..+..-.|.+
T Consensus 97 ~~~~~~~req~~~~~~K~~e~~~ql~ke~a~~~~nrk~~~~~--E~~nrka~~~~~~~e~~~~ss~-~~~~~~~t~~P~s 173 (233)
T KOG4739|consen 97 LKQLEKDREQTAYFEKKTQEETQQLSKEEAFIENNRKKLQAS--ELENRKAERLISALELKSASSF-IKKSKKNTETPSS 173 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhchhhhhhccccch-hhhcccccCCccc
Confidence 334555556666667777777777777555544444444443 4444566777777777554321 1233222445555
Q ss_pred CC
Q 013250 430 LG 431 (447)
Q Consensus 430 ~g 431 (447)
.+
T Consensus 174 ~~ 175 (233)
T KOG4739|consen 174 SR 175 (233)
T ss_pred cc
Confidence 55
No 22
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=54.52 E-value=59 Score=28.62 Aligned_cols=52 Identities=27% Similarity=0.298 Sum_probs=41.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhhHHhhhchhhhHHHHhhhhhhhhhhhhhhhhhhhccccc
Q 013250 349 IKKQKLALQNQRVSIQAQAFELEKQHLKWLRYCSKKDRELERSRLENERIRLDNEQMILHLKQKQF 414 (447)
Q Consensus 349 ~~~r~LQLEEQrlqIq~q~leLekQRlKWerf~~KKdRElEk~rLENERmrLENERm~Lelr~KEL 414 (447)
|-.++.+||+|-.++..+.-+|+++ +..+--||-+.++||+.+.=.|...+-
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~--------------~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQ--------------LQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5567889999999999999998875 456667999999999998866654433
No 23
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=54.13 E-value=23 Score=31.66 Aligned_cols=51 Identities=24% Similarity=0.388 Sum_probs=37.7
Q ss_pred hhhhhhHHHHHHHHHHHhhhHHhhhchhhhHHHHhhhhhhhhhhhhhhhhhhhccc
Q 013250 357 QNQRVSIQAQAFELEKQHLKWLRYCSKKDRELERSRLENERIRLDNEQMILHLKQK 412 (447)
Q Consensus 357 EEQrlqIq~q~leLekQRlKWerf~~KKdRElEk~rLENERmrLENERm~Lelr~K 412 (447)
|||+|+|-...+.|. .+.=+-+-.-|.|+..|.|+..++||+=+.|++..-
T Consensus 2 EEeKLqISKeLVDLQ-----Ie~~rL~Eq~EaE~FELk~~vL~lE~rvleLel~~~ 52 (108)
T PF14739_consen 2 EEEKLQISKELVDLQ-----IETNRLREQHEAEKFELKNEVLRLENRVLELELHGD 52 (108)
T ss_pred hHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 677788877776543 233333455688999999999999999999988654
No 24
>PF10045 DUF2280: Uncharacterized conserved protein (DUF2280); InterPro: IPR018738 This entry is represented by Burkholderia phage Bups phi1, Orf2.36. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=52.41 E-value=18 Score=32.33 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=16.4
Q ss_pred HHHHHHhhcccccChhhhhh
Q 013250 167 TVSKIMISRGCQVSPQQCED 186 (447)
Q Consensus 167 ~vs~~M~ekG~~vSpqQCed 186 (447)
.|..+=.|-|..||+||||.
T Consensus 25 v~~aVk~eFgi~vsrQqve~ 44 (104)
T PF10045_consen 25 VAEAVKEEFGIDVSRQQVES 44 (104)
T ss_pred HHHHHHHHhCCccCHHHHHH
Confidence 34556678999999999997
No 25
>PF09356 Phage_BR0599: Phage conserved hypothetical protein BR0599; InterPro: IPR018964 This entry describes the C-terminal region of a family of proteins found almost exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus (Rhodopseudomonas capsulata) gene transfer agent, which packages DNA. An apparent exception is Wolbachia pipientis wMel, a bacterial endosymbiont of the fruit fly, which has several candidate phage-related genes physically separate from obvious prophage regions.
Probab=51.52 E-value=6.2 Score=32.73 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=17.4
Q ss_pred hcccccChhhhhhhhhhHHH
Q 013250 174 SRGCQVSPQQCEDKFNDLNK 193 (447)
Q Consensus 174 ekG~~vSpqQCedKfndLnk 193 (447)
-.||.-++.-|..||||+.+
T Consensus 50 ~~GCDkt~~tC~~kF~N~~N 69 (80)
T PF09356_consen 50 YPGCDKTFATCRAKFNNALN 69 (80)
T ss_pred EeCCCCCHHHHHHHhCCccc
Confidence 47999999999999999753
No 26
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=50.24 E-value=4.2 Score=41.06 Aligned_cols=37 Identities=35% Similarity=0.674 Sum_probs=27.6
Q ss_pred HHHhhcccccChhhhhhhhhhHHHHHHHHHHhhcCCcceeeecCch
Q 013250 170 KIMISRGCQVSPQQCEDKFNDLNKRYKKLNDILGKGLTCQVVENPA 215 (447)
Q Consensus 170 ~~M~ekG~~vSpqQCedKfndLnkRYKRlnDiLGRGtaC~VVENpa 215 (447)
+.++|-|-.-|+--| ||---|-|-|+|.||+.|--|.
T Consensus 195 rflkevgnspsavyc---------ryynangicgkgaacrfvhept 231 (377)
T KOG1492|consen 195 RFLKEVGNSPSAVYC---------RYYNANGICGKGAACRFVHEPT 231 (377)
T ss_pred HHHHHhCCCCceeEE---------EEecCCCcccCCceeeeecccc
Confidence 345555555555555 6777899999999999998875
No 27
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.36 E-value=52 Score=38.40 Aligned_cols=16 Identities=25% Similarity=0.522 Sum_probs=8.2
Q ss_pred CCCcccccCCCCcccc
Q 013250 14 GQNVGLLDLESSIPRN 29 (447)
Q Consensus 14 g~~~G~~dle~~~~~~ 29 (447)
|++.|.++...|+...
T Consensus 109 ~fg~Gsls~~qpL~~a 124 (1118)
T KOG1029|consen 109 GFGMGSLSYSQPLPPA 124 (1118)
T ss_pred ccCCCCcCcCCCCCcc
Confidence 4444556655555443
No 28
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=43.06 E-value=33 Score=37.07 Aligned_cols=51 Identities=25% Similarity=0.198 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhHHhhhchhhhHHHHhhhhhhhhhhhhhhhh
Q 013250 345 RREWIKKQKLALQNQRVSIQAQAFELEKQHLKWLRYCSKKDRELERSRLENERIRLDNEQMI 406 (447)
Q Consensus 345 qk~w~~~r~LQLEEQrlqIq~q~leLekQRlKWerf~~KKdRElEk~rLENERmrLENERm~ 406 (447)
|-+||...+-+||+|.-+|++|.+|-.--|-+|-. ..|||=..||||-.|-
T Consensus 113 ~i~~i~~~~~el~~q~e~~ea~e~e~~~erh~~h~-----------~~le~i~~~l~n~~~~ 163 (548)
T COG5665 113 QVLFIHDCLDELQKQLEQYEAQENEEQTERHEFHI-----------ANLENILKKLQNNEMD 163 (548)
T ss_pred ceehHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHhccCCC
Confidence 44699999999999999999998777777888864 4577777777776654
No 29
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=42.50 E-value=12 Score=41.65 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=15.6
Q ss_pred ccChhhhhhhhhhHHHHHHHHH
Q 013250 178 QVSPQQCEDKFNDLNKRYKKLN 199 (447)
Q Consensus 178 ~vSpqQCedKfndLnkRYKRln 199 (447)
+..|..+-+-.+||..-|+++.
T Consensus 546 ~~~~~~~~~~l~dl~~c~~~~~ 567 (784)
T PF04931_consen 546 YNGPEEAVDVLDDLQICYEKAF 567 (784)
T ss_pred hcCChHHHHHHHHHHHHHHHHh
Confidence 3456666778888888887764
No 30
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=41.97 E-value=12 Score=45.22 Aligned_cols=14 Identities=36% Similarity=0.418 Sum_probs=9.2
Q ss_pred eeeecCchhh----cccC
Q 013250 208 CQVVENPALI----DTMS 221 (447)
Q Consensus 208 C~VVENpaLL----D~md 221 (447)
-+-..||+|- |.|+
T Consensus 1597 ~RPman~aLAgnnhD~Md 1614 (3015)
T KOG0943|consen 1597 ARPMANFALAGNNHDAMD 1614 (3015)
T ss_pred cccCCChhhccCCCChhH
Confidence 3455688884 6666
No 31
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=38.48 E-value=17 Score=40.66 Aligned_cols=11 Identities=36% Similarity=0.806 Sum_probs=4.9
Q ss_pred cccchhHHHHH
Q 013250 122 RMKWTDNVVRL 132 (447)
Q Consensus 122 RmkWtd~mvkl 132 (447)
.++|...++..
T Consensus 472 ~~~~~~~l~~~ 482 (784)
T PF04931_consen 472 GMKWLYTLVQI 482 (784)
T ss_pred ccchHHHHHHH
Confidence 34444444443
No 32
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=36.25 E-value=93 Score=36.85 Aligned_cols=19 Identities=37% Similarity=0.403 Sum_probs=10.6
Q ss_pred CChhhHHHHHhhhcccchhHH
Q 013250 225 LSAKAKDDVRKILGSKHLFYK 245 (447)
Q Consensus 225 LS~K~KdevRKiLsSKHLFye 245 (447)
+.|..+-.|..+|. |-|+.
T Consensus 281 ~dPeeRPSa~QlL~--h~~ik 299 (1021)
T PTZ00266 281 LSAKERPSALQCLG--YQIIK 299 (1021)
T ss_pred CChhHCcCHHHHhc--cHHHh
Confidence 55666666666664 44544
No 33
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=35.31 E-value=1e+02 Score=27.49 Aligned_cols=49 Identities=24% Similarity=0.231 Sum_probs=40.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhhHHhhhchhhhHHHHhhhhhhhhhhhhhhhhhhhcc
Q 013250 349 IKKQKLALQNQRVSIQAQAFELEKQHLKWLRYCSKKDRELERSRLENERIRLDNEQMILHLKQ 411 (447)
Q Consensus 349 ~~~r~LQLEEQrlqIq~q~leLekQRlKWerf~~KKdRElEk~rLENERmrLENERm~Lelr~ 411 (447)
+-.+..+||+|--++..++-+|+++ +..+--||-+.++||+.+.-.+..
T Consensus 6 lfd~l~~le~~l~~l~~el~~LK~~--------------~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 6 IFDALDDLEQNLGVLLKELGALKKQ--------------LAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5557899999999999999999875 556677999999999998866653
No 34
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=34.38 E-value=13 Score=34.07 Aligned_cols=8 Identities=63% Similarity=0.779 Sum_probs=4.3
Q ss_pred CChhhHHH
Q 013250 225 LSAKAKDD 232 (447)
Q Consensus 225 LS~K~Kde 232 (447)
|.+++|++
T Consensus 39 Lga~AKdE 46 (149)
T PF03066_consen 39 LGAGAKDE 46 (149)
T ss_dssp E-TTS-SS
T ss_pred cCCCccCc
Confidence 77777773
No 35
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=34.04 E-value=21 Score=42.19 Aligned_cols=8 Identities=38% Similarity=0.625 Sum_probs=5.8
Q ss_pred ceeeecCc
Q 013250 207 TCQVVENP 214 (447)
Q Consensus 207 aC~VVENp 214 (447)
-|+||=|.
T Consensus 1304 qc~VtFNs 1311 (1516)
T KOG1832|consen 1304 QCAVTFNS 1311 (1516)
T ss_pred ceEEEecc
Confidence 48887775
No 36
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.78 E-value=50 Score=36.02 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=45.1
Q ss_pred HHHHH---HHHHHHHHhhhhhhHHHHHHH-HHHHhhhHHhhhchhhhHHHHhhhhhhh----hhhhhhh
Q 013250 344 ERREW---IKKQKLALQNQRVSIQAQAFE-LEKQHLKWLRYCSKKDRELERSRLENER----IRLDNEQ 404 (447)
Q Consensus 344 ~qk~w---~~~r~LQLEEQrlqIq~q~le-LekQRlKWerf~~KKdRElEk~rLENER----mrLENER 404 (447)
.+++| +.+.-+-+..-.-.|++|+.. ||.-|--|..++.|++||+..++.-|.| .-|||++
T Consensus 75 v~rq~~eeVaSlqa~~k~~~~~ye~q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem 143 (542)
T KOG0993|consen 75 VVRQEEEEVASLQASQKSPNPTYECQMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEM 143 (542)
T ss_pred HHHhhccccchhHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHH
Confidence 45666 334333344555678999988 9999999999999999999988877766 4566654
No 37
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=30.97 E-value=94 Score=34.54 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=20.6
Q ss_pred HHHhhhhhhHHHHHHHHHHHhhhHHhhhchhhhHHHH
Q 013250 354 LALQNQRVSIQAQAFELEKQHLKWLRYCSKKDRELER 390 (447)
Q Consensus 354 LQLEEQrlqIq~q~leLekQRlKWerf~~KKdRElEk 390 (447)
..++|+++++|...|.++--|-+=.|=+..|.--+|+
T Consensus 519 ar~qekQiq~Ek~ELkmd~lrerelreslekql~~Er 555 (641)
T KOG3915|consen 519 ARAQEKQIQLEKTELKMDFLRERELRESLEKQLAMER 555 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777666666655555444444444433443
No 38
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=30.83 E-value=50 Score=36.20 Aligned_cols=44 Identities=36% Similarity=0.607 Sum_probs=33.8
Q ss_pred ccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhH
Q 013250 123 MKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDL 191 (447)
Q Consensus 123 mkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndL 191 (447)
=-||++++=||+.+|--.|+| |..|+.--. ..|..||-.||=.|
T Consensus 254 ~~WT~qE~lLLLE~ie~y~dd---------------------W~kVa~hVg----~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 254 PNWTEQETLLLLEAIEMYGDD---------------------WNKVADHVG----TKSQEQCILKFLRL 297 (506)
T ss_pred CCccHHHHHHHHHHHHHhccc---------------------HHHHHhccC----CCCHHHHHHHHHhc
Confidence 359999999999988766655 666665444 67899999999655
No 39
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=29.52 E-value=25 Score=42.90 Aligned_cols=10 Identities=40% Similarity=0.767 Sum_probs=5.1
Q ss_pred chhHHHHHHH
Q 013250 125 WTDNVVRLLI 134 (447)
Q Consensus 125 Wtd~mvkllI 134 (447)
|-+-.|+-||
T Consensus 1482 wl~~Ft~~Li 1491 (3015)
T KOG0943|consen 1482 WLDCFTHCLI 1491 (3015)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 40
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=29.46 E-value=98 Score=23.54 Aligned_cols=34 Identities=21% Similarity=0.538 Sum_probs=27.0
Q ss_pred HHHHHhhcccccChhhhhhhhhhHHHHHHHHHHhh
Q 013250 168 VSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDIL 202 (447)
Q Consensus 168 vs~~M~ekG~~vSpqQCedKfndLnkRYKRlnDiL 202 (447)
....|...+ +-++..+..++..|+.||..|+..+
T Consensus 63 ~~~~L~~~~-~~~~~~i~~~~~~l~~~w~~l~~~~ 96 (105)
T PF00435_consen 63 QAQQLIDSG-PEDSDEIQEKLEELNQRWEALCELV 96 (105)
T ss_dssp HHHHHHHTT-HTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 345565555 6677999999999999999998765
No 41
>PF03871 RNA_pol_Rpb5_N: RNA polymerase Rpb5, N-terminal domain; InterPro: IPR005571 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region, plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) (IPR000783 from INTERPRO) [, , , ]. This entry represents the N-terminal domain of eukaryotic RPB5, which has a core structure consisting of 3 layers alpha/beta/alpha []. The N-terminal domain is involved in DNA binding and is part of the jaw module in the RNA pol II structure []. This module is important for positioning the downstream DNA.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 3H0G_Q 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E 1I50_E ....
Probab=29.00 E-value=6.8 Score=33.07 Aligned_cols=32 Identities=22% Similarity=0.453 Sum_probs=23.6
Q ss_pred hhHHHHHHhhcccccChhhhhhhhhhHHHHHH
Q 013250 165 WKTVSKIMISRGCQVSPQQCEDKFNDLNKRYK 196 (447)
Q Consensus 165 Wk~vs~~M~ekG~~vSpqQCedKfndLnkRYK 196 (447)
|++|-.-|..|||.|++++.+-.|.+...+|-
T Consensus 14 rrTv~eMl~DRGY~V~~~el~~s~~~F~~~~~ 45 (93)
T PF03871_consen 14 RRTVMEMLRDRGYLVSEEELNMSLEEFKEKYG 45 (93)
T ss_dssp HCCCCCCCCCCTEE--CCCCS--HHHHHHHCB
T ss_pred HHHHHHHHhcCCCccChhhhcCCHHHHHHHHc
Confidence 55666778899999999999999999888883
No 42
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.35 E-value=1.4e+02 Score=35.27 Aligned_cols=12 Identities=17% Similarity=0.462 Sum_probs=6.0
Q ss_pred cCCCCCCCCCcC
Q 013250 252 NGKKIPNCHDID 263 (447)
Q Consensus 252 N~nr~~l~~d~~ 263 (447)
-+..+|.--+|.
T Consensus 263 sGq~lP~tlP~E 274 (1118)
T KOG1029|consen 263 SGQPLPKTLPPE 274 (1118)
T ss_pred cCCCCCCCCChh
Confidence 345555555543
No 43
>PF13280 WYL: WYL domain
Probab=25.83 E-value=42 Score=28.25 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=25.2
Q ss_pred HHHHhhcCCcceeeecCchhhcccCcccCChhhHHHHHhhh
Q 013250 197 KLNDILGKGLTCQVVENPALIDTMSCSHLSAKAKDDVRKIL 237 (447)
Q Consensus 197 RlnDiLGRGtaC~VVENpaLLD~md~~~LS~K~KdevRKiL 237 (447)
=+.-||+-|..|.|++.+.|.+.| ++.++++|
T Consensus 141 ~~~~l~~~g~~v~Vl~P~~lr~~~---------~~~l~~~l 172 (172)
T PF13280_consen 141 LLRWLLSFGDHVEVLEPESLRQRL---------KERLEKML 172 (172)
T ss_pred HHHHHHHhCCCEEEECCHHHHHHH---------HHHHHHhC
Confidence 356689999999999988776654 57777775
No 44
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=24.73 E-value=2.1e+02 Score=34.06 Aligned_cols=14 Identities=14% Similarity=0.157 Sum_probs=8.4
Q ss_pred CChhhHHHHHhhhc
Q 013250 225 LSAKAKDDVRKILG 238 (447)
Q Consensus 225 LS~K~KdevRKiLs 238 (447)
.++.+.+-++++|.
T Consensus 267 ~S~eL~dLI~~~L~ 280 (1021)
T PTZ00266 267 KSKELNILIKNLLN 280 (1021)
T ss_pred CCHHHHHHHHHHhc
Confidence 45566666666664
No 45
>PF08595 RXT2_N: RXT2-like, N-terminal; InterPro: IPR013904 The entry represents the N-terminal region of RXT2-like proteins. In Saccharomyces cerevisiae (Baker's yeast), RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth []. A high throughput localisation study has localised RXT2 to the nucleus [].
Probab=24.37 E-value=22 Score=32.99 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=10.1
Q ss_pred cccchhHHHHhhhccC-CCCCCC
Q 013250 238 GSKHLFYKEMFAYHNG-KKIPNC 259 (447)
Q Consensus 238 sSKHLFyeEMCsYHN~-nr~~l~ 259 (447)
++..-||++-+ +||| .|.-|.
T Consensus 22 ~~~~~~~~~~v-ey~G~~r~vL~ 43 (149)
T PF08595_consen 22 PNGPSLYEKVV-EYNGSERSVLQ 43 (149)
T ss_pred CCCccccceee-EECCeeeeEee
Confidence 34444566644 5555 444333
No 46
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=23.83 E-value=64 Score=29.10 Aligned_cols=49 Identities=22% Similarity=0.194 Sum_probs=32.1
Q ss_pred hhHHhhhchhhhHHHHh-----hhhhhhhhhhhhhhhhhhcccccccccccccc
Q 013250 375 LKWLRYCSKKDRELERS-----RLENERIRLDNEQMILHLKQKQFELDLRKTEV 423 (447)
Q Consensus 375 lKWerf~~KKdRElEk~-----rLENERmrLENERm~Lelr~KELEL~lK~~e~ 423 (447)
.+.+|++..|+-|-..| .||-||..+||=.--|..|-|-||..+|.-..
T Consensus 14 ~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~ 67 (134)
T PF08232_consen 14 HRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERA 67 (134)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566665555555 57777777777777777777777777654433
No 47
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.67 E-value=50 Score=35.93 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=13.7
Q ss_pred hhhhhhhHHHHHHHHHHhhc
Q 013250 184 CEDKFNDLNKRYKKLNDILG 203 (447)
Q Consensus 184 CedKfndLnkRYKRlnDiLG 203 (447)
-+|-.+-++--.+||-|++-
T Consensus 175 ~~dvl~~d~ele~~l~d~~~ 194 (514)
T KOG3130|consen 175 SKDVLLADKELEARLEDLER 194 (514)
T ss_pred hhhccCchHHHHHHHHHHhh
Confidence 34556667777888888764
No 48
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=22.34 E-value=43 Score=36.85 Aligned_cols=46 Identities=17% Similarity=0.325 Sum_probs=38.2
Q ss_pred HHHHhhcccccChhhhhhhhhhHHHHHHHHHHhhcCCc----ceeeecCchhhcccC
Q 013250 169 SKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDILGKGL----TCQVVENPALIDTMS 221 (447)
Q Consensus 169 s~~M~ekG~~vSpqQCedKfndLnkRYKRlnDiLGRGt----aC~VVENpaLLD~md 221 (447)
-..+.+.|. .|+|.++-++|+|+|..||-.. +-|||-++|++-.|.
T Consensus 305 ~~q~~~~g~-------~d~~~~vl~e~~~v~~~lG~~~~VTP~Sq~vg~~A~~nv~~ 354 (592)
T PRK09282 305 VSQLKEQNA-------LDKLDEVLEEIPRVREDLGYPPLVTPTSQIVGTQAVLNVLT 354 (592)
T ss_pred HHHHHHCCc-------HHHHHHHHHHHHHHHHHcCCCCeECChhHhHHHHHHHHHHc
Confidence 334556665 4599999999999999999987 579999999998876
No 49
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=21.87 E-value=45 Score=29.58 Aligned_cols=11 Identities=18% Similarity=0.546 Sum_probs=7.6
Q ss_pred hhHHHHHhhhc
Q 013250 228 KAKDDVRKILG 238 (447)
Q Consensus 228 K~KdevRKiLs 238 (447)
+||+.|-.+|+
T Consensus 37 qm~e~vsel~~ 47 (96)
T PF15387_consen 37 QMRELVSELFG 47 (96)
T ss_pred HHHHHHHHHHH
Confidence 67777777665
No 50
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=21.86 E-value=39 Score=39.15 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=7.4
Q ss_pred hhhhhhhhhHHHHH
Q 013250 182 QQCEDKFNDLNKRY 195 (447)
Q Consensus 182 qQCedKfndLnkRY 195 (447)
-+|-+||+.|.+-|
T Consensus 851 l~~~~k~~~L~~~F 864 (911)
T PF05086_consen 851 LRKQDKCEKLKKNF 864 (911)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555543
No 51
>PLN03162 golden-2 like transcription factor; Provisional
Probab=21.39 E-value=1.7e+02 Score=31.93 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=21.5
Q ss_pred ccccchhHHHHHHHHHHHhhcCC
Q 013250 121 HRMKWTDNVVRLLIAAVACVGDD 143 (447)
Q Consensus 121 ~RmkWtd~mvkllI~~v~~~g~d 143 (447)
.||.||...=+.|+.||..+|-|
T Consensus 236 pRLrWTpELH~rFVeAV~qLG~d 258 (526)
T PLN03162 236 AKVDWTPELHRRFVHAVEQLGVE 258 (526)
T ss_pred CcccCCHHHHHHHHHHHHHhCcC
Confidence 69999999999999999999954
No 52
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=20.57 E-value=2.4e+02 Score=26.45 Aligned_cols=13 Identities=23% Similarity=0.248 Sum_probs=7.1
Q ss_pred hhHHHHHHhhccC
Q 013250 325 SVFEMEMARIFQD 337 (447)
Q Consensus 325 ~~~~~d~n~~~~d 337 (447)
....-|+|+-+-.
T Consensus 31 smSVReLNr~LrG 43 (135)
T KOG4196|consen 31 SMSVRELNRHLRG 43 (135)
T ss_pred HhhHHHHHHHhcC
Confidence 3444567765554
No 53
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=20.29 E-value=1.2e+02 Score=34.23 Aligned_cols=70 Identities=19% Similarity=0.228 Sum_probs=44.1
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCcc---Ccccccc--cchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHH
Q 013250 122 RMKWTDNVVRLLIAAVACVGDDGTID---GVEGLKR--KSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRY 195 (447)
Q Consensus 122 RmkWtd~mvkllI~~v~~~g~d~~~d---~~~~~kr--~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRY 195 (447)
|=-||-.+...||.+|..+=+..-+- -+.++.| ..+.|..-=-|-+||..|. .+|+-||.-||+.|..+|
T Consensus 436 r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~----TR~~~qCr~Kw~kl~~~~ 510 (607)
T KOG0051|consen 436 RGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLG----TRSRIQCRYKWYKLTTSP 510 (607)
T ss_pred cCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhc----CCCcchHHHHHHHHHhhH
Confidence 34589999999999995332211110 0000111 1123334456999999444 579999999999999886
No 54
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=20.15 E-value=75 Score=36.09 Aligned_cols=59 Identities=19% Similarity=0.321 Sum_probs=31.2
Q ss_pred hhhchhhhHHHHhhhhhhhhhhhhhhhhhhhcc----ccccccccccccccCCCCCC---CCCcchhh
Q 013250 379 RYCSKKDRELERSRLENERIRLDNEQMILHLKQ----KQFELDLRKTEVSLEPTSLG---NRDRDRDQ 439 (447)
Q Consensus 379 rf~~KKdRElEk~rLENERmrLENERm~Lelr~----KELEL~lK~~e~~l~p~~~g---~r~~~r~~ 439 (447)
.|++.=.+.++.+.-|.|+||-+..|..-.+|+ |+.|++|+. ...+|+..| -|+.||=.
T Consensus 364 eF~kRV~~~ia~~~AEIekmK~~Hak~m~k~k~~s~lk~AE~~LR~--a~~~p~~~G~E~WRlEGrl~ 429 (669)
T PF08549_consen 364 EFRKRVAKKIADMNAEIEKMKARHAKRMAKFKRNSLLKDAEKELRD--AVEDPSETGPEIWRLEGRLD 429 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHh--ccCCccccCccceeeccccc
Confidence 344444555555566666666665554433322 233333333 344777777 57777744
Done!