Query 013250
Match_columns 447
No_of_seqs 64 out of 66
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 07:02:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013250.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013250hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebi_A DNA binding protein GT- 99.6 3.5E-16 1.2E-20 124.9 0.8 70 122-202 4-73 (86)
2 3sjm_A Telomeric repeat-bindin 97.2 0.00044 1.5E-08 53.4 4.9 51 121-193 10-60 (64)
3 1w0t_A Telomeric repeat bindin 97.2 0.00044 1.5E-08 50.6 4.6 49 122-193 2-51 (53)
4 1ity_A TRF1; helix-turn-helix, 96.7 0.002 7E-08 49.4 5.1 50 121-193 9-59 (69)
5 2ckx_A NGTRF1, telomere bindin 96.3 0.0053 1.8E-07 49.9 5.5 52 124-195 2-53 (83)
6 2roh_A RTBP1, telomere binding 96.1 0.013 4.5E-07 50.9 7.3 55 121-195 30-84 (122)
7 1guu_A C-MYB, MYB proto-oncoge 96.1 0.0061 2.1E-07 44.0 4.3 46 122-191 3-48 (52)
8 2juh_A Telomere binding protei 96.0 0.0085 2.9E-07 52.1 5.5 55 121-195 16-70 (121)
9 2aje_A Telomere repeat-binding 95.9 0.005 1.7E-07 52.3 3.6 54 121-194 12-65 (105)
10 1x41_A Transcriptional adaptor 95.7 0.015 5.1E-07 43.6 5.1 48 120-191 6-53 (60)
11 2d9a_A B-MYB, MYB-related prot 95.4 0.015 5E-07 43.3 4.1 46 122-191 8-53 (60)
12 2elk_A SPCC24B10.08C protein; 95.4 0.03 1E-06 41.9 5.7 47 122-191 9-55 (58)
13 2dim_A Cell division cycle 5-l 95.2 0.028 9.6E-07 43.0 5.2 45 122-190 9-53 (70)
14 2din_A Cell division cycle 5-l 94.8 0.056 1.9E-06 40.9 5.9 47 123-195 10-56 (66)
15 1gvd_A MYB proto-oncogene prot 94.6 0.026 8.9E-07 40.8 3.4 46 122-191 3-48 (52)
16 2cqr_A RSGI RUH-043, DNAJ homo 94.4 0.069 2.3E-06 42.5 5.7 51 121-192 17-67 (73)
17 2yus_A SWI/SNF-related matrix- 94.3 0.078 2.7E-06 42.4 5.8 46 121-191 17-62 (79)
18 2yum_A ZZZ3 protein, zinc fing 93.8 0.018 6.1E-07 44.5 1.2 48 123-189 9-56 (75)
19 2cqq_A RSGI RUH-037, DNAJ homo 93.8 0.098 3.4E-06 41.4 5.4 48 124-193 10-57 (72)
20 2k9n_A MYB24; R2R3 domain, DNA 93.1 0.1 3.6E-06 42.6 4.7 44 123-190 2-45 (107)
21 2k9n_A MYB24; R2R3 domain, DNA 93.0 0.14 4.8E-06 41.9 5.4 47 124-195 55-101 (107)
22 2cjj_A Radialis; plant develop 92.4 0.23 7.7E-06 41.2 5.9 52 124-196 10-61 (93)
23 1gv2_A C-MYB, MYB proto-oncoge 92.0 0.11 3.7E-06 42.0 3.5 45 122-190 4-48 (105)
24 3osg_A MYB21; transcription-DN 91.9 0.12 4.2E-06 43.4 3.8 47 124-195 64-110 (126)
25 2cu7_A KIAA1915 protein; nucle 91.8 0.27 9.3E-06 37.9 5.4 48 122-194 9-56 (72)
26 1irz_A ARR10-B; helix-turn-hel 91.8 0.25 8.4E-06 39.0 5.1 50 120-189 5-54 (64)
27 2llk_A Cyclin-D-binding MYB-li 91.7 0.18 6.3E-06 40.0 4.4 43 124-192 25-67 (73)
28 3osg_A MYB21; transcription-DN 91.7 0.16 5.4E-06 42.8 4.2 44 122-190 11-54 (126)
29 1gv2_A C-MYB, MYB proto-oncoge 91.2 0.11 3.8E-06 41.9 2.7 46 124-194 58-103 (105)
30 1h8a_C AMV V-MYB, MYB transfor 89.7 0.3 1E-05 40.8 4.2 44 123-190 28-71 (128)
31 3zqc_A MYB3; transcription-DNA 88.0 0.21 7.3E-06 42.1 2.1 46 124-194 56-101 (131)
32 1h8a_C AMV V-MYB, MYB transfor 87.9 0.21 7.2E-06 41.8 2.0 46 124-194 81-126 (128)
33 3zqc_A MYB3; transcription-DNA 86.9 0.39 1.3E-05 40.5 3.1 43 124-190 4-46 (131)
34 2ltp_A Nuclear receptor corepr 85.9 0.15 5.3E-06 41.1 0.0 47 124-195 18-64 (89)
35 1wgx_A KIAA1903 protein; MYB D 85.1 0.96 3.3E-05 36.3 4.3 58 124-211 10-67 (73)
36 1h89_C C-MYB, MYB proto-oncoge 84.8 0.79 2.7E-05 39.6 4.0 44 123-190 59-102 (159)
37 1h89_C C-MYB, MYB proto-oncoge 81.5 0.55 1.9E-05 40.6 1.7 47 123-194 111-157 (159)
38 1x58_A Hypothetical protein 49 80.9 2 6.7E-05 33.8 4.5 51 121-194 7-58 (62)
39 2iw5_B Protein corest, REST co 73.8 2 7E-05 41.3 3.3 45 121-190 132-176 (235)
40 2xag_B REST corepressor 1; ami 64.9 3.5 0.00012 43.0 3.0 56 122-203 380-435 (482)
41 3s9g_A Protein hexim1; cyclin 55.6 31 0.0011 29.6 6.7 52 353-404 39-90 (104)
42 3pf6_A Hypothetical protein PP 44.7 8.3 0.00028 30.2 1.4 26 228-253 24-51 (62)
43 2zd7_A VPS75, vacuolar protein 39.2 6.9 0.00024 37.3 0.3 6 122-127 145-150 (264)
44 1ign_A Protein (RAP1); RAP1,ye 37.9 18 0.00063 35.0 2.9 57 122-199 8-64 (246)
45 2byk_A Chrac-16; nucleosome sl 32.9 9.3 0.00032 33.6 0.0 21 224-244 56-81 (140)
46 3a2a_A Voltage-gated hydrogen 31.8 44 0.0015 26.1 3.6 37 349-392 9-45 (58)
47 1go4_E MAD1 (mitotic arrest de 31.3 26 0.0009 29.7 2.5 45 386-430 19-68 (100)
48 3oja_B Anopheles plasmodium-re 23.4 2E+02 0.0068 28.5 7.6 30 370-399 542-571 (597)
49 2yqk_A Arginine-glutamic acid 23.3 61 0.0021 24.4 3.1 24 122-145 9-32 (63)
50 2ayu_A Nucleosome assembly pro 23.0 18 0.0006 37.0 0.0 22 181-202 117-139 (417)
51 2nx9_A Oxaloacetate decarboxyl 20.5 39 0.0013 34.5 1.9 47 168-221 308-358 (464)
No 1
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=99.56 E-value=3.5e-16 Score=124.89 Aligned_cols=70 Identities=27% Similarity=0.408 Sum_probs=61.8
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHHHHHHHh
Q 013250 122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDI 201 (447)
Q Consensus 122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRYKRlnDi 201 (447)
+..||+.+|++||.|+.+....+.. + ++ ++.+|+.||..|.++||.|||+||++||++|+++||++.|.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~----~-~~------~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~ 72 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNT----S-KS------NKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHH 72 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHH----S-SC------CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHc----c-cc------chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3579999999999999987766643 3 33 48899999999999999999999999999999999999886
Q ss_pred h
Q 013250 202 L 202 (447)
Q Consensus 202 L 202 (447)
-
T Consensus 73 ~ 73 (86)
T 2ebi_A 73 D 73 (86)
T ss_dssp C
T ss_pred c
Confidence 4
No 2
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.17 E-value=0.00044 Score=53.35 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=41.0
Q ss_pred ccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHH
Q 013250 121 HRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNK 193 (447)
Q Consensus 121 ~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnk 193 (447)
.|-+||..+..+|+.+|...| .++|..|++.+.-. .+|+.||.++|.+|.|
T Consensus 10 kk~~WT~eED~~L~~~V~~~G--------------------~~~W~~Ia~~~~~~--~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYG--------------------EGNWAAISKNYPFV--NRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHC--------------------TTCHHHHHHHSCCS--SCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccC--------------------CCchHHHHhhcCCC--CCCHHHHHHHHHHHhc
Confidence 356899999999999998663 24699999875311 4899999999999875
No 3
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.16 E-value=0.00044 Score=50.65 Aligned_cols=49 Identities=18% Similarity=0.328 Sum_probs=41.3
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhccc-ccChhhhhhhhhhHHH
Q 013250 122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGC-QVSPQQCEDKFNDLNK 193 (447)
Q Consensus 122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~-~vSpqQCedKfndLnk 193 (447)
|-.||..+..+||.+|...| .++|..|+..|. | .+|+.||.+.|+++.|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G--------------------~~~W~~Ia~~~~---~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYG--------------------EGNWSKILLHYK---FNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHC--------------------TTCHHHHHHHSC---CSSCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHC--------------------cCCHHHHHHHcC---CCCCCHHHHHHHHHHHHc
Confidence 45799999999999998653 247999999984 5 4999999999999875
No 4
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=96.71 E-value=0.002 Score=49.38 Aligned_cols=50 Identities=18% Similarity=0.326 Sum_probs=41.7
Q ss_pred ccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhccc-ccChhhhhhhhhhHHH
Q 013250 121 HRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGC-QVSPQQCEDKFNDLNK 193 (447)
Q Consensus 121 ~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~-~vSpqQCedKfndLnk 193 (447)
.|-.||..+..+||.+|...| .++|..|++.|. | .+|+.||.+.|+++.+
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G--------------------~~~W~~Ia~~~~---~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYG--------------------EGNWSKILLHYK---FNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHC--------------------SSCHHHHHHHSC---CSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHC--------------------CCcHHHHHHHcC---cCCCCHHHHHHHHHHHcC
Confidence 356799999999999998653 257999999984 4 7999999999998765
No 5
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=96.33 E-value=0.0053 Score=49.93 Aligned_cols=52 Identities=21% Similarity=0.356 Sum_probs=41.5
Q ss_pred cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHH
Q 013250 124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRY 195 (447)
Q Consensus 124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRY 195 (447)
.||..++..||..|.-.| .|+|..|++.....=-.+|+-||.|||++|.|+-
T Consensus 2 ~WT~eEd~~L~~gv~k~G--------------------~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLG--------------------TGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCHHHHHHHHHHHHHHC--------------------SSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC--------------------CCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 599999999999998764 4789999986321113699999999999998754
No 6
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=96.13 E-value=0.013 Score=50.94 Aligned_cols=55 Identities=25% Similarity=0.355 Sum_probs=44.3
Q ss_pred ccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHH
Q 013250 121 HRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRY 195 (447)
Q Consensus 121 ~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRY 195 (447)
.|-.||..++..|+..|.-.| .|+|..|.+.+-..=-.+|+-||.|||.+|.|.-
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G--------------------~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLG--------------------TGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHS--------------------SSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHC--------------------CCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 356899999999999998764 3789999986532113699999999999998754
No 7
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=96.09 E-value=0.0061 Score=44.04 Aligned_cols=46 Identities=20% Similarity=0.490 Sum_probs=38.6
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhH
Q 013250 122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDL 191 (447)
Q Consensus 122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndL 191 (447)
|-.||..+-.+|+.+|...| .++|..|++.|. .+|+.||...|+++
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G--------------------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNG--------------------TDDWKVIANYLP----NRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHC--------------------SSCHHHHHHTST----TCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC--------------------CCCHHHHHHHcC----CCCHHHHHHHHHHH
Confidence 45799999999999998653 257999999985 48999999999875
No 8
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=95.99 E-value=0.0085 Score=52.08 Aligned_cols=55 Identities=22% Similarity=0.342 Sum_probs=45.3
Q ss_pred ccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHH
Q 013250 121 HRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRY 195 (447)
Q Consensus 121 ~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRY 195 (447)
.|-.||..++.+||..|.-.| .|+|..|.+.+..---.+|+-||.|||++|.+.-
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G--------------------~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLG--------------------TGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHG--------------------GGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHC--------------------CCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 456899999999999998764 3799999998744224799999999999998753
No 9
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=95.91 E-value=0.005 Score=52.26 Aligned_cols=54 Identities=22% Similarity=0.350 Sum_probs=42.8
Q ss_pred ccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHH
Q 013250 121 HRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKR 194 (447)
Q Consensus 121 ~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkR 194 (447)
.|-.||..++..|+..|.-.| .|+|..|.+.+.+-=-.+|+-||.|||.+|.|.
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G--------------------~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLG--------------------TGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHC--------------------SSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhC--------------------CCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 466799999999999998664 378999988542111369999999999999874
No 10
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=95.70 E-value=0.015 Score=43.65 Aligned_cols=48 Identities=25% Similarity=0.458 Sum_probs=39.4
Q ss_pred CccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhH
Q 013250 120 WHRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDL 191 (447)
Q Consensus 120 W~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndL 191 (447)
-.|-+||..+-.+||.+|...|. ++|+.|++.|. .+|+.||...|+++
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~--------------------~~W~~Ia~~~~----~Rt~~qcr~r~~~~ 53 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGF--------------------GNWQDVANQMC----TKTKEECEKHYMKY 53 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCT--------------------TCHHHHHHHHT----TSCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCc--------------------CcHHHHHHHhC----CCCHHHHHHHHHHH
Confidence 34567999999999999987642 47999999994 38999999988754
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=95.41 E-value=0.015 Score=43.26 Aligned_cols=46 Identities=26% Similarity=0.476 Sum_probs=38.1
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhH
Q 013250 122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDL 191 (447)
Q Consensus 122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndL 191 (447)
|-.||..+-.+|+.+|...| .++|..|++.|. .+|+.||...|+++
T Consensus 8 k~~Wt~eED~~L~~~v~~~G--------------------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 8 KVKWTHEEDEQLRALVRQFG--------------------QQDWKFLASHFP----NRTDQQCQYRWLRV 53 (60)
T ss_dssp CSCCCHHHHHHHHHHHHHTC--------------------TTCHHHHHHHCS----SSCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhC--------------------CCCHHHHHHHcc----CCCHHHHHHHHHHH
Confidence 45799999999999998753 146999999985 38999999998764
No 12
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=95.38 E-value=0.03 Score=41.88 Aligned_cols=47 Identities=21% Similarity=0.506 Sum_probs=38.6
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhH
Q 013250 122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDL 191 (447)
Q Consensus 122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndL 191 (447)
+-+||..+-.+|+.+|...| .+.|..|++.|.. .+|+.||...|+++
T Consensus 9 ~~~WT~eED~~L~~~v~~~G--------------------~~~W~~IA~~~~~---~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 9 DENWGADEELLLIDACETLG--------------------LGNWADIADYVGN---ARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTT--------------------TTCHHHHHHHHCS---SCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHC--------------------cCCHHHHHHHHCC---CCCHHHHHHHHHHH
Confidence 45799999999999997653 2579999999952 57999999988754
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.20 E-value=0.028 Score=43.02 Aligned_cols=45 Identities=24% Similarity=0.552 Sum_probs=37.6
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhh
Q 013250 122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFND 190 (447)
Q Consensus 122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfnd 190 (447)
|-.||..+-.+|+.+|...| .++|..|++.|. .+|+.||...|++
T Consensus 9 ~~~Wt~eED~~L~~~v~~~G--------------------~~~W~~Ia~~l~----~Rt~~qcr~Rw~~ 53 (70)
T 2dim_A 9 GGVWRNTEDEILKAAVMKYG--------------------KNQWSRIASLLH----RKSAKQCKARWYE 53 (70)
T ss_dssp TCCCCHHHHHHHHHHHHHTC--------------------SSCHHHHHHHST----TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHC--------------------cCCHHHHHHHhc----CCCHHHHHHHHHH
Confidence 34799999999999998654 247999999996 5899999988875
No 14
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.82 E-value=0.056 Score=40.89 Aligned_cols=47 Identities=19% Similarity=0.497 Sum_probs=37.7
Q ss_pred ccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHH
Q 013250 123 MKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRY 195 (447)
Q Consensus 123 mkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRY 195 (447)
-.||..+-.+||.+|...| . +|..|++ |. | +|+.||..-|+.+.+.-
T Consensus 10 ~~WT~eED~~L~~~~~~~g--------------------~-~W~~Ia~-~~--g--Rt~~qcr~Rw~~~l~~~ 56 (66)
T 2din_A 10 TEWSREEEEKLLHLAKLMP--------------------T-QWRTIAP-II--G--RTAAQCLEHYEFLLDKA 56 (66)
T ss_dssp CCCCHHHHHHHHHHHHHCT--------------------T-CHHHHHH-HH--S--SCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC--------------------C-CHHHHhc-cc--C--cCHHHHHHHHHHHhChH
Confidence 4699999999999976532 1 6999999 55 4 99999999998876543
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=94.62 E-value=0.026 Score=40.81 Aligned_cols=46 Identities=22% Similarity=0.471 Sum_probs=37.6
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhH
Q 013250 122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDL 191 (447)
Q Consensus 122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndL 191 (447)
+-.||..+-.+|+.+|...| .+.|..|++.|. .+|+.||...|++.
T Consensus 3 k~~Wt~eED~~L~~~v~~~G--------------------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYG--------------------PKRWSVIAKHLK----GRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHC--------------------TTCHHHHHTTST----TCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHC--------------------cChHHHHHHHcC----CCCHHHHHHHHHHH
Confidence 34799999999999998654 235999999984 47999999998764
No 16
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=94.41 E-value=0.069 Score=42.46 Aligned_cols=51 Identities=20% Similarity=0.367 Sum_probs=41.8
Q ss_pred ccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHH
Q 013250 121 HRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLN 192 (447)
Q Consensus 121 ~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLn 192 (447)
-+-.||..+-++|+.|++.+|.+ + ..+|..|++.|- -+|+.||...|+.|.
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~-------~----------~~rW~~IA~~vp----GRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRG-------S----------SDCWDKIARCVP----SKSKEDCIARYKLLV 67 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSS-------S----------HHHHHHHGGGCS----SSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCC-------C----------CchHHHHHHHcC----CCCHHHHHHHHHHHH
Confidence 44569999999999999998864 1 246999999986 389999998888774
No 17
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=94.26 E-value=0.078 Score=42.42 Aligned_cols=46 Identities=24% Similarity=0.423 Sum_probs=38.0
Q ss_pred ccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhH
Q 013250 121 HRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDL 191 (447)
Q Consensus 121 ~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndL 191 (447)
.+-.||..+..+|+.||...| +.|..|++.|. .+|+.||...|+.|
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G---------------------~~W~~IA~~v~----~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK---------------------DDWNKVSEHVG----SRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS---------------------SCHHHHHHHHS----SCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhC---------------------CCHHHHHHHcC----CCCHHHHHHHHHHh
Confidence 356799999999999987543 46999999985 48999999988765
No 18
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.77 E-value=0.018 Score=44.54 Aligned_cols=48 Identities=10% Similarity=0.197 Sum_probs=38.9
Q ss_pred ccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhh
Q 013250 123 MKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFN 189 (447)
Q Consensus 123 mkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfn 189 (447)
-.||..+-.+|+.+|...|.+... ..+|..|++.|. .+|+.||...|+
T Consensus 9 ~~WT~eEd~~L~~~v~~~g~~~~~---------------~~~W~~IA~~~~----~Rt~~qcr~r~~ 56 (75)
T 2yum_A 9 QLWTVEEQKKLEQLLIKYPPEEVE---------------SRRWQKIADELG----NRTAKQVASQVQ 56 (75)
T ss_dssp SCCCHHHHHHHHHHHHHSCCCSCH---------------HHHHHHHHHHHS----SSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCC---------------cccHHHHHHHhC----CCCHHHHHHHHH
Confidence 369999999999999988854311 257999999995 389999998884
No 19
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=93.76 E-value=0.098 Score=41.39 Aligned_cols=48 Identities=19% Similarity=0.430 Sum_probs=39.1
Q ss_pred cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHH
Q 013250 124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNK 193 (447)
Q Consensus 124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnk 193 (447)
.||..+.++|+.|++.++.+. -..|+.|+..| | +|+.||..+|+.|..
T Consensus 10 ~WT~eE~k~fe~al~~~p~~t-----------------~~RW~~IA~~l---g--Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 10 EWTEEDLSQLTRSMVKFPGGT-----------------PGRWEKIAHEL---G--RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCHHHHHHHHHHHHHSCTTC-----------------TTHHHHHHHHH---T--SCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCC-----------------CcHHHHHHHHh---C--CCHHHHHHHHHHHHH
Confidence 599999999999999887542 13599999998 4 799999987777643
No 20
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=93.10 E-value=0.1 Score=42.64 Aligned_cols=44 Identities=30% Similarity=0.595 Sum_probs=36.6
Q ss_pred ccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhh
Q 013250 123 MKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFND 190 (447)
Q Consensus 123 mkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfnd 190 (447)
.+||..+-.+|+.+|...| .+.|..|+..|. .+|+.||-+.|++
T Consensus 2 ~~Wt~eED~~L~~~v~~~g--------------------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~ 45 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYG--------------------AKDWIRISQLMI----TRNPRQCRERWNN 45 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHC--------------------SSCHHHHHHHTT----TSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHC--------------------CCCHHHHhhhcC----CCCHHHHHHHHHH
Confidence 5799999999999998764 146999999996 4799999987754
No 21
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=93.03 E-value=0.14 Score=41.88 Aligned_cols=47 Identities=21% Similarity=0.365 Sum_probs=40.3
Q ss_pred cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHH
Q 013250 124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRY 195 (447)
Q Consensus 124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRY 195 (447)
.||..+-.+||.+|...| .+|..|++.|. .+|+.||...|+.|.++-
T Consensus 55 ~WT~eEd~~L~~~~~~~G---------------------~~W~~Ia~~l~----gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 55 PWSPEEDMLLDQKYAEYG---------------------PKWNKISKFLK----NRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp CCCHHHHHHHHHHHHHTC---------------------SCHHHHHHHHS----SSCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC---------------------cCHHHHHHHCC----CCCHHHHHHHHHHHHhhH
Confidence 689999999999998764 26999999884 489999999999988764
No 22
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=92.41 E-value=0.23 Score=41.17 Aligned_cols=52 Identities=19% Similarity=0.450 Sum_probs=43.1
Q ss_pred cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHHH
Q 013250 124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYK 196 (447)
Q Consensus 124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRYK 196 (447)
.||..+-++|+.|++.+|.+. -..|..|++.|- | +|+.||...|+.|...-+
T Consensus 10 ~WT~eEd~~L~~al~~~~~~~-----------------~~rW~~IA~~vp--G--RT~~q~k~ry~~l~~dv~ 61 (93)
T 2cjj_A 10 PWSAKENKAFERALAVYDKDT-----------------PDRWANVARAVE--G--RTPEEVKKHYEILVEDIK 61 (93)
T ss_dssp SCCHHHHHHHHHHHHHSCTTC-----------------TTHHHHHHHHST--T--CCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCC-----------------CchHHHHHHHcC--C--CCHHHHHHHHHHHHHHHH
Confidence 599999999999999887641 246999999995 3 899999999999876533
No 23
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=92.04 E-value=0.11 Score=42.02 Aligned_cols=45 Identities=20% Similarity=0.479 Sum_probs=36.5
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhh
Q 013250 122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFND 190 (447)
Q Consensus 122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfnd 190 (447)
+-.||..+-.+|+.+|...|. +.|..|++.|. .+|+.||.+.|.+
T Consensus 4 k~~WT~eED~~L~~~v~~~g~--------------------~~W~~Ia~~l~----~Rt~~qcr~Rw~~ 48 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGP--------------------KRWSVIAKHLK----GRIGKQCRERWHN 48 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCT--------------------TCHHHHHTTST----TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC--------------------CcHHHHhhhhc----CCCHHHHHHHHHh
Confidence 347999999999999986642 36999999985 4799999987655
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=91.92 E-value=0.12 Score=43.43 Aligned_cols=47 Identities=15% Similarity=0.425 Sum_probs=39.7
Q ss_pred cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHH
Q 013250 124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRY 195 (447)
Q Consensus 124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRY 195 (447)
.||..+-.+|+.+|...|. +|..|++.|. .+|+.||...|+.|.++.
T Consensus 64 ~WT~eEd~~L~~~v~~~G~---------------------~W~~Ia~~l~----gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 64 PWTAEEDALLVQKIQEYGR---------------------QWAIIAKFFP----GRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CCCHHHHHHHHHHHHHHCS---------------------CHHHHHTTST----TCCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHCc---------------------CHHHHHHHcC----CCCHHHHHHHHHHHHHhc
Confidence 5999999999999987741 4999998774 489999999999988763
No 25
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=91.84 E-value=0.27 Score=37.87 Aligned_cols=48 Identities=23% Similarity=0.355 Sum_probs=39.5
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHH
Q 013250 122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKR 194 (447)
Q Consensus 122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkR 194 (447)
+-.||..+-.+||.+|...|. +|..|++.|. .+|+.||...|+.+-++
T Consensus 9 ~~~WT~eEd~~l~~~~~~~G~---------------------~W~~Ia~~~~----~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 9 SVKWTIEEKELFEQGLAKFGR---------------------RWTKISKLIG----SRTVLQVKSYARQYFKN 56 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHTCS---------------------CHHHHHHHHS----SSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---------------------CHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence 346999999999999987651 5999999885 37999999999877554
No 26
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=91.76 E-value=0.25 Score=38.97 Aligned_cols=50 Identities=18% Similarity=0.315 Sum_probs=40.3
Q ss_pred CccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhh
Q 013250 120 WHRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFN 189 (447)
Q Consensus 120 W~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfn 189 (447)
=.||.||..+-+.|+.||..+|-| |..||.|-..|...| ++.+|.+--..
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~------------------~AtPk~Il~~M~v~g--LT~~~VkSHLQ 54 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVE------------------RAVPKKILDLMNVDK--LTRENVASHLQ 54 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTT------------------TCCHHHHHHHHCCTT--CCHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCC------------------CCCcHHHHHHcCCCC--CCHHHHHHHHH
Confidence 369999999999999999999833 466888889998877 67777775433
No 27
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=91.75 E-value=0.18 Score=40.05 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=36.2
Q ss_pred cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHH
Q 013250 124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLN 192 (447)
Q Consensus 124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLn 192 (447)
.||..+-.+||.+|...| .+|..|++.| -+|+.||...|+-|.
T Consensus 25 ~wT~EED~~L~~l~~~~G---------------------~kW~~IA~~l-----gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 25 KYTPEEIEKLKELRIKHG---------------------NDWATIGAAL-----GRSASSVKDRCRLMK 67 (73)
T ss_dssp SSCHHHHHHHHHHHHHHS---------------------SCHHHHHHHH-----TSCHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHHC---------------------CCHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 699999999999998764 1399999999 379999999888663
No 28
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=91.71 E-value=0.16 Score=42.77 Aligned_cols=44 Identities=27% Similarity=0.541 Sum_probs=36.3
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhh
Q 013250 122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFND 190 (447)
Q Consensus 122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfnd 190 (447)
|-+||..+-.+|+.+|...|. .|+.|+..|. .+|+.||.+.|++
T Consensus 11 k~~WT~eED~~L~~~v~~~G~---------------------~W~~Ia~~~~----~Rt~~qcr~Rw~~ 54 (126)
T 3osg_A 11 KQKFTPEEDEMLKRAVAQHGS---------------------DWKMIAATFP----NRNARQCRDRWKN 54 (126)
T ss_dssp SCCCCHHHHHHHHHHHHHHTT---------------------CHHHHHHTCT----TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---------------------CHHHHHHHcC----CCCHHHHHHHHhh
Confidence 457999999999999986531 4999999885 3799999988875
No 29
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=91.20 E-value=0.11 Score=41.92 Aligned_cols=46 Identities=20% Similarity=0.518 Sum_probs=38.4
Q ss_pred cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHH
Q 013250 124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKR 194 (447)
Q Consensus 124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkR 194 (447)
.||..+-.+|+.+|...| .+|..|++.|. .+|+.||...|+.|.+|
T Consensus 58 ~Wt~eEd~~L~~~~~~~G---------------------~~W~~Ia~~l~----gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 58 SWTEEEDRIIYQAHKRLG---------------------NRWAEIAKLLP----GRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCHHHHHHHHHHHHHHS---------------------SCHHHHHTTCT----TCCHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHHHhC---------------------CCHHHHHHHcC----CCCHHHHHHHHHHHHhc
Confidence 689999999999998764 26999998773 38999999999988765
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=89.73 E-value=0.3 Score=40.84 Aligned_cols=44 Identities=20% Similarity=0.475 Sum_probs=36.2
Q ss_pred ccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhh
Q 013250 123 MKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFND 190 (447)
Q Consensus 123 mkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfnd 190 (447)
-.||..+-.+|+.+|...|. +.|..|+..|. .+|+.||.+.|++
T Consensus 28 ~~Wt~eED~~L~~~v~~~g~--------------------~~W~~Ia~~l~----~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 28 GPWTKEEDQRVIEHVQKYGP--------------------KRWSDIAKHLK----GRIGKQCRERWHN 71 (128)
T ss_dssp SCCCHHHHHHHHHHHHHTCS--------------------CCHHHHHHHSS----SCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC--------------------CCHHHHHHHhc----CCcHHHHHHHHHH
Confidence 36999999999999987642 36999999985 4799999987765
No 31
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=87.95 E-value=0.21 Score=42.15 Aligned_cols=46 Identities=15% Similarity=0.394 Sum_probs=38.2
Q ss_pred cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHH
Q 013250 124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKR 194 (447)
Q Consensus 124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkR 194 (447)
.||..+-.+|+.+|...|. +|..|++.|. .+|+.||...|+.+.++
T Consensus 56 ~Wt~eEd~~L~~~~~~~G~---------------------~W~~Ia~~l~----gRt~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 56 AWTPEEDETIFRNYLKLGS---------------------KWSVIAKLIP----GRTDNAIKNRWNSSISK 101 (131)
T ss_dssp CCCHHHHHHHHHHHHHSCS---------------------CHHHHTTTST----TCCHHHHHHHHHHTTGG
T ss_pred CCCHHHHHHHHHHHHHHCc---------------------CHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence 4999999999999987651 5999999875 48999999999876543
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=87.91 E-value=0.21 Score=41.83 Aligned_cols=46 Identities=20% Similarity=0.526 Sum_probs=38.9
Q ss_pred cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHH
Q 013250 124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKR 194 (447)
Q Consensus 124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkR 194 (447)
.||..+-.+|+.++...| .+|..|++.|- .+|+.||...|+.|.++
T Consensus 81 ~WT~eEd~~L~~~~~~~G---------------------~~W~~Ia~~l~----gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 81 SWTEEEDRIIYQAHKRLG---------------------NRWAEIAKLLP----GRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp CCCHHHHHHHHHHHHHHC---------------------SCHHHHGGGST----TCCHHHHHHHHHTTTTC
T ss_pred cCCHHHHHHHHHHHHHHC---------------------cCHHHHHHHCC----CCCHHHHHHHHHHHHhc
Confidence 599999999999998764 26999998874 38999999999988764
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=86.88 E-value=0.39 Score=40.54 Aligned_cols=43 Identities=21% Similarity=0.471 Sum_probs=35.5
Q ss_pred cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhh
Q 013250 124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFND 190 (447)
Q Consensus 124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfnd 190 (447)
+||..+-.+|+.+|...| .+.|..|+..|. .+|+.||.+.|.+
T Consensus 4 ~Wt~eED~~L~~~v~~~g--------------------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~ 46 (131)
T 3zqc_A 4 PFTEAEDDLIREYVKENG--------------------PQNWPRITSFLP----NRSPKQCRERWFN 46 (131)
T ss_dssp SCCHHHHHHHHHHHHHHC--------------------SCCGGGGTTSCT----TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC--------------------cCCHHHHHHHHC----CCCHHHHHHHHhh
Confidence 699999999999998764 246999999885 4799999987754
No 34
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=85.86 E-value=0.15 Score=41.14 Aligned_cols=47 Identities=17% Similarity=0.458 Sum_probs=38.8
Q ss_pred cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHH
Q 013250 124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRY 195 (447)
Q Consensus 124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRY 195 (447)
.||..+-.+||.+|...| + +|..|++.|. .+|+.||..-|+.+-+++
T Consensus 18 ~WT~eEd~~l~~~~~~~G--------------------~-~W~~IA~~l~----gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 18 GWTEEEMGTAKKGLLEHG--------------------R-NWSAIARMVG----SKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 589999999999887653 1 4999999985 479999999999877664
No 35
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=85.11 E-value=0.96 Score=36.29 Aligned_cols=58 Identities=28% Similarity=0.499 Sum_probs=43.6
Q ss_pred cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHHHHHHHhhc
Q 013250 124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDILG 203 (447)
Q Consensus 124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRYKRlnDiLG 203 (447)
.||..+.++|..|++.++++. -+-|..|+..+.. .|+.+|..+|+.| .-|
T Consensus 10 ~WT~eE~k~fe~ALa~~~~~t-----------------p~rWe~IA~~V~g----KT~eE~~~hY~~l---------~~~ 59 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLPKHK-----------------PGFWSEVAAAVGS----RSPEECQRKYMEN---------PRG 59 (73)
T ss_dssp CCCHHHHHHHHHHHHHSCSSS-----------------SSHHHHHHHHTTT----SCHHHHHHHHHHS---------SSS
T ss_pred CCCHHHHHHHHHHHHHCCCCC-----------------ccHHHHHHHHcCC----CCHHHHHHHHHHH---------Hhc
Confidence 499999999999999877651 2469999999864 7999998655544 456
Q ss_pred CCcceeee
Q 013250 204 KGLTCQVV 211 (447)
Q Consensus 204 RGtaC~VV 211 (447)
+|+.=.|+
T Consensus 60 ~~s~~~~~ 67 (73)
T 1wgx_A 60 KGSQKHVT 67 (73)
T ss_dssp SCCCCSSS
T ss_pred cccccccc
Confidence 66654443
No 36
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=84.78 E-value=0.79 Score=39.58 Aligned_cols=44 Identities=20% Similarity=0.469 Sum_probs=36.0
Q ss_pred ccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhh
Q 013250 123 MKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFND 190 (447)
Q Consensus 123 mkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfnd 190 (447)
-.||..+-.+||.+|...|. ..|..|++.|. .+|+.||...|++
T Consensus 59 ~~Wt~eEd~~L~~~v~~~g~--------------------~~W~~Ia~~l~----~Rt~~qcr~Rw~~ 102 (159)
T 1h89_C 59 GPWTKEEDQRVIKLVQKYGP--------------------KRWSVIAKHLK----GRIGKQCRERWHN 102 (159)
T ss_dssp SCCCHHHHHHHHHHHHHHCS--------------------CCHHHHHHTST----TCCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhCc--------------------ccHHHHHHHcC----CCCHHHHHHHHHH
Confidence 36999999999999987642 35999999985 4799999987765
No 37
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=81.52 E-value=0.55 Score=40.56 Aligned_cols=47 Identities=19% Similarity=0.503 Sum_probs=39.2
Q ss_pred ccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHH
Q 013250 123 MKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKR 194 (447)
Q Consensus 123 mkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkR 194 (447)
-.||..+-.+|+.++..+| .+|..|++.|- .+|+.||...|+.|.++
T Consensus 111 ~~WT~eEd~~L~~~~~~~g---------------------~~W~~Ia~~l~----gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 111 TSWTEEEDRIIYQAHKRLG---------------------NRWAEIAKLLP----GRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp SCCCHHHHHHHHHHHHHHC---------------------SCHHHHHTTST----TCCHHHHHHHHHTTTCC
T ss_pred cCCChHHHHHHHHHHHHHC---------------------CCHHHHHHHCC----CCCHHHHHHHHHHHHhc
Confidence 4689999999999998764 26999999874 38999999999987654
No 38
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=80.93 E-value=2 Score=33.84 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=38.4
Q ss_pred ccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhccc-ccChhhhhhhhhhHHHH
Q 013250 121 HRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGC-QVSPQQCEDKFNDLNKR 194 (447)
Q Consensus 121 ~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~-~vSpqQCedKfndLnkR 194 (447)
.|-+||.-++..||..|..+| + +|+.|+....- + .+|.-.=.|||.+|.|+
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G--------------------~-~W~~I~~~y~f--~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMG--------------------N-HWNSILWSFPF--QKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHC--------------------S-CHHHHHHHSCC--CTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHh--------------------H-hHHHHHHhCCC--ccCcccchHHHHHHHHHhc
Confidence 466899999999999887663 4 69999875432 2 56777778888888763
No 39
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=73.83 E-value=2 Score=41.26 Aligned_cols=45 Identities=22% Similarity=0.381 Sum_probs=37.0
Q ss_pred ccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhh
Q 013250 121 HRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFND 190 (447)
Q Consensus 121 ~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfnd 190 (447)
..-.||..+.++|+.|+...|.| |..|++.+.. .|+.||..-|.+
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKD---------------------W~~IAk~VgT----KT~~QcKnfY~~ 176 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRD---------------------FQAISDVIGN----KSVVQVKNFFVN 176 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSC---------------------HHHHHHHHSS----CCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCcC---------------------HHHHHHHcCC----CCHHHHHHHHHH
Confidence 45679999999999999887654 8889998753 699999986654
No 40
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=64.91 E-value=3.5 Score=43.01 Aligned_cols=56 Identities=21% Similarity=0.432 Sum_probs=40.4
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHHHHHHHh
Q 013250 122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDI 201 (447)
Q Consensus 122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRYKRlnDi 201 (447)
...||+.+..+|+.++...|+| |..|++.+.-| |+.||..-|.. ++++-.|.+|
T Consensus 380 ~~~WT~eE~~~f~~al~~yGkd---------------------w~~IA~~VgTK----T~~Qvk~fy~~-~kkr~~ld~i 433 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYGRD---------------------FQAISDVIGNK----SVVQVKNFFVN-YRRRFNIDEV 433 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTC---------------------HHHHHHHHSSC----CHHHHHHHHHH-TTTTTTHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcC---------------------HHHHHHHhCCC----CHHHHHHHHHH-HHHHhChHHH
Confidence 3589999999999988776654 88899998654 99999986642 2222226666
Q ss_pred hc
Q 013250 202 LG 203 (447)
Q Consensus 202 LG 203 (447)
|.
T Consensus 434 l~ 435 (482)
T 2xag_B 434 LQ 435 (482)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 41
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=55.60 E-value=31 Score=29.64 Aligned_cols=52 Identities=21% Similarity=0.225 Sum_probs=24.5
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhhhHHhhhchhhhHHHHhhhhhhhhhhhhhh
Q 013250 353 KLALQNQRVSIQAQAFELEKQHLKWLRYCSKKDRELERSRLENERIRLDNEQ 404 (447)
Q Consensus 353 ~LQLEEQrlqIq~q~leLekQRlKWerf~~KKdRElEk~rLENERmrLENER 404 (447)
-|+||+.--+++.+--.|..+....-..-..=+.|+++++.||.+.+.||+.
T Consensus 39 Yl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 39 YLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455554444433333332222111222233345666677777777776653
No 42
>3pf6_A Hypothetical protein PP-LUZ7_GP033; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.60A {Pseudomonas phage LUZ7}
Probab=44.66 E-value=8.3 Score=30.19 Aligned_cols=26 Identities=31% Similarity=0.709 Sum_probs=22.4
Q ss_pred hhHHHHHhhh--cccchhHHHHhhhccC
Q 013250 228 KAKDDVRKIL--GSKHLFYKEMFAYHNG 253 (447)
Q Consensus 228 K~KdevRKiL--sSKHLFyeEMCsYHN~ 253 (447)
.+-||||-+| .|.|=|.+-|-.|||.
T Consensus 24 ~aleear~l~pggshhdfmra~mgyhnt 51 (62)
T 3pf6_A 24 DALEEARLLFPGGTHHDFMRALMGYHNT 51 (62)
T ss_dssp HHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCchHHHHHHHHhhhHH
Confidence 3568999998 5899999999999994
No 43
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=39.18 E-value=6.9 Score=37.26 Aligned_cols=6 Identities=17% Similarity=0.999 Sum_probs=3.2
Q ss_pred cccchh
Q 013250 122 RMKWTD 127 (447)
Q Consensus 122 RmkWtd 127 (447)
.++|..
T Consensus 145 ~I~WK~ 150 (264)
T 2zd7_A 145 PIEWPQ 150 (264)
T ss_dssp CCCCCG
T ss_pred ccccCC
Confidence 356654
No 44
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=37.89 E-value=18 Score=34.95 Aligned_cols=57 Identities=12% Similarity=0.238 Sum_probs=43.4
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHHHHHH
Q 013250 122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLN 199 (447)
Q Consensus 122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRYKRln 199 (447)
+-+||..+-.+||.+|...|- +|+ ...+|..||+.|. -+|+-||.+-|+.+-++ +||
T Consensus 8 k~~FT~EED~~Ile~v~k~Gn----------~r~-----ghk~W~~IAk~Lp----GRT~nsIRnRw~~~L~~--~ln 64 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRKNPT----------RRT-----THTLYDEISHYVP----NHTGNSIRHRFRVYLSK--RLE 64 (246)
T ss_dssp CCCCCHHHHHHHHHHHHTSGG----------GTT-----CSHHHHHHTTTST----TSCHHHHHHHHHHTTGG--GCC
T ss_pred CCCCCHHHHHHHHHHHHHhCc----------Ccc-----ccccHHHHHHHcC----CCCHHHHHHHHHHHHhh--hcc
Confidence 458999999999999987652 332 1234999999877 37999999999985543 455
No 45
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=32.94 E-value=9.3 Score=33.64 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=14.0
Q ss_pred cCChhhHHHH-----HhhhcccchhH
Q 013250 224 HLSAKAKDDV-----RKILGSKHLFY 244 (447)
Q Consensus 224 ~LS~K~Kdev-----RKiLsSKHLFy 244 (447)
+|+..+-.-+ ||.|+-+||..
T Consensus 56 ~Lt~~A~~~a~~~~kRKtI~~~Dl~~ 81 (140)
T 2byk_A 56 HLAGAAYTEEFGQRPGEALKYEHLSQ 81 (140)
T ss_dssp HHHHHHHHHHHTTCCSCEECHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccCHHHHHH
Confidence 4566665666 77788888754
No 46
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=31.83 E-value=44 Score=26.12 Aligned_cols=37 Identities=35% Similarity=0.527 Sum_probs=27.1
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhhHHhhhchhhhHHHHhh
Q 013250 349 IKKQKLALQNQRVSIQAQAFELEKQHLKWLRYCSKKDRELERSR 392 (447)
Q Consensus 349 ~~~r~LQLEEQrlqIq~q~leLekQRlKWerf~~KKdRElEk~r 392 (447)
...|++.|.+..+++-++.-+||-| |.++|.|++++.
T Consensus 9 se~q~~kLKq~n~~L~~kv~~Le~~-------c~e~eQEieRL~ 45 (58)
T 3a2a_A 9 SERQLLRLKQMNVQLAAKIQHLEFS-------CSEKEQEIERLN 45 (58)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 4557888888888888877776543 888888888765
No 47
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=31.26 E-value=26 Score=29.70 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=31.3
Q ss_pred hHHHHhhhhhhhhhhhhhhhhhhhccccccccc-----cccccccCCCCC
Q 013250 386 RELERSRLENERIRLDNEQMILHLKQKQFELDL-----RKTEVSLEPTSL 430 (447)
Q Consensus 386 RElEk~rLENERmrLENERm~Lelr~KELEL~l-----K~~e~~l~p~~~ 430 (447)
++++.+++||+|++=+++.++++|.+..|.-++ |=.-+...|+++
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~ 68 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSV 68 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHH
Confidence 467788888888888888888888776664444 444555555554
No 48
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.36 E-value=2e+02 Score=28.51 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=15.1
Q ss_pred HHHHhhhHHhhhchhhhHHHHhhhhhhhhh
Q 013250 370 LEKQHLKWLRYCSKKDRELERSRLENERIR 399 (447)
Q Consensus 370 LekQRlKWerf~~KKdRElEk~rLENERmr 399 (447)
|++++-+++++..+....+++++.|+...+
T Consensus 542 ~~~~~~~le~~~~~~~~~~~~l~~e~~~~~ 571 (597)
T 3oja_B 542 LEQENIALEKQLDNKRAKQAELRQETSLKR 571 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 445555555555555555555554444443
No 49
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.31 E-value=61 Score=24.41 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=20.8
Q ss_pred cccchhHHHHHHHHHHHhhcCCCC
Q 013250 122 RMKWTDNVVRLLIAAVACVGDDGT 145 (447)
Q Consensus 122 RmkWtd~mvkllI~~v~~~g~d~~ 145 (447)
+..||..+.++|..+++..|+|+.
T Consensus 9 ~~~WT~eE~~~Fe~~l~~yGKdf~ 32 (63)
T 2yqk_A 9 EKCWTEDEVKRFVKGLRQYGKNFF 32 (63)
T ss_dssp CCSCCHHHHHHHHHHHHHTCSCHH
T ss_pred CCCcCHHHHHHHHHHHHHhCccHH
Confidence 467999999999999999988753
No 50
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=22.98 E-value=18 Score=36.99 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=13.8
Q ss_pred hhhhhhhhhhHHH-HHHHHHHhh
Q 013250 181 PQQCEDKFNDLNK-RYKKLNDIL 202 (447)
Q Consensus 181 pqQCedKfndLnk-RYKRlnDiL 202 (447)
--++|.||+.+.+ -|.|=++|+
T Consensus 117 v~eLE~Ky~~~~~PLy~KR~eII 139 (417)
T 2ayu_A 117 MFELENKFLQKYKPIWEQRSRII 139 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777776655 466666666
No 51
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=20.51 E-value=39 Score=34.54 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=38.6
Q ss_pred HHHHHhhcccccChhhhhhhhhhHHHHHHHHHHhhcCC----cceeeecCchhhcccC
Q 013250 168 VSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDILGKG----LTCQVVENPALIDTMS 221 (447)
Q Consensus 168 vs~~M~ekG~~vSpqQCedKfndLnkRYKRlnDiLGRG----taC~VVENpaLLD~md 221 (447)
+-..+.+-|+- +||..+-+.||++|++||.. -+-++|-..|++..|.
T Consensus 308 l~~q~~~~g~~-------~~~~~v~~~~~~v~~~~G~~~~VTP~Sq~~g~~A~~~vl~ 358 (464)
T 2nx9_A 308 MESQLKQQNAL-------DKLDLVLEEIPRVREELGFLPLVTPTSQIVGTQAVINVVL 358 (464)
T ss_dssp HHHHHHTTSCG-------GGHHHHHHHHHHHHHHTTTCCSCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCH-------hHHHHHHHHHHHHHHHcCCCcccCchhHhhHHHHHHHHHc
Confidence 34455777874 89999999999999999994 4558999999998875
Done!