BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013251
         (447 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q4ZIN3|MBRL_HUMAN Membralin OS=Homo sapiens GN=C19orf6 PE=1 SV=1
          Length = 620

 Score = 66.6 bits (161), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 97/200 (48%), Gaps = 25/200 (12%)

Query: 236 YTMEKGYFLLPEADKSRHNIRTFNISISA-QHPCFGNRWQQLLINRFVGYDTILMNSLL- 293
           Y++E G+  L +A + R +I    +++   +  CFG+R+ +LL++ F+GYD ILM+S+  
Sbjct: 213 YSLEYGFLRLSQATRQRLSIPVMVVTLDPTRDQCFGDRFSRLLLDEFLGYDDILMSSVKG 272

Query: 294 ---HTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVL-MMSLFVFFTTTMS 349
              +   +G+L N  + E Y             +F    + +   L   ++ V F  T+S
Sbjct: 273 LAENEENKGFLRNVVSGEHY-------------RFVSMWMARTSYLAAFAIMVIF--TLS 317

Query: 350 VSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDD 409
           VS  LR +  ++  F V L    +  +     I       L  +  ++G+   + EF++D
Sbjct: 318 VSMLLRYSHHQIFVFIVDLLQMLEMNM----AIAFPAAPLLTVILALVGMEAIMSEFFND 373

Query: 410 QLLAFLVLILVWLCELFTLI 429
              AF ++++VWL + +  I
Sbjct: 374 TTTAFYIILIVWLADQYDAI 393


>sp|Q8CIV2|MBRL_MOUSE Membralin OS=Mus musculus GN=ORF61 PE=1 SV=2
          Length = 574

 Score = 65.5 bits (158), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 94/199 (47%), Gaps = 23/199 (11%)

Query: 236 YTMEKGYFLLPEADKSRHNIRTFNISISA-QHPCFGNRWQQLLINRFVGYDTILMNSLL- 293
           Y++E G+  L +A + R +I    +++   +  CFG+R+ +LL++ F+GYD ILM+S+  
Sbjct: 204 YSLEYGFLRLSQATRQRLSIPVMVVTLDPTRDQCFGDRFSRLLLDEFLGYDDILMSSVKG 263

Query: 294 ---HTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSV 350
              +   +G+L N  + E Y             +F    + +   L  +  +    T+SV
Sbjct: 264 LAENEENKGFLRNVVSGEHY-------------RFVSMWMARTSYL-AAFVIMVIFTLSV 309

Query: 351 SFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQ 410
           S  LR +  ++  F V L    +  +     I       L  +  ++G+   + EF++D 
Sbjct: 310 SMLLRYSHHQIFVFIVDLLQMLEMNM----AIAFPAAPLLTVILALVGMEAIMSEFFNDT 365

Query: 411 LLAFLVLILVWLCELFTLI 429
             AF +++ VWL + +  I
Sbjct: 366 TTAFYIILTVWLADQYDAI 384


>sp|A8EZU1|YBEY_RICCK Endoribonuclease YbeY OS=Rickettsia canadensis (strain McKiel)
           GN=ybeY PE=3 SV=1
          Length = 172

 Score = 32.7 bits (73), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 14  FSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYVQQPGCSSEFAGIRMTEAQLIQIKI 73
           FS V +P++   + Y Y+ +    FC  V+ + +Y QQ    + F  +      LI   +
Sbjct: 87  FSNV-SPKLELLIGYDYMHLGDIAFCYEVIYNESYEQQKTSENHFIHL------LIHSIL 139

Query: 74  SSAGLWSQNDSDSNVVDVTSVD 95
              G   QND+++N+++   ++
Sbjct: 140 HLIGFDHQNDTEANIMENLEIE 161


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.328    0.139    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,277,160
Number of Sequences: 539616
Number of extensions: 6115073
Number of successful extensions: 18296
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 18292
Number of HSP's gapped (non-prelim): 6
length of query: 447
length of database: 191,569,459
effective HSP length: 121
effective length of query: 326
effective length of database: 126,275,923
effective search space: 41165950898
effective search space used: 41165950898
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)