Query 013251
Match_columns 447
No_of_seqs 81 out of 83
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 01:57:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013251.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013251hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09746 Membralin: Tumour-ass 100.0 1.1E-96 2E-101 745.9 20.6 338 4-431 14-368 (375)
2 KOG2092 Uncharacterized conser 100.0 3.2E-52 6.9E-57 411.0 6.4 307 5-408 55-381 (381)
3 KOG2092 Uncharacterized conser 100.0 3E-30 6.6E-35 255.5 -0.4 186 236-431 1-186 (381)
4 PF03268 DUF267: Caenorhabditi 52.6 45 0.00098 35.3 7.1 45 377-436 233-277 (353)
5 PF12679 ABC2_membrane_2: ABC- 47.6 2.1E+02 0.0046 27.0 10.4 105 294-423 92-198 (277)
6 PF00317 Ribonuc_red_lgN: Ribo 42.1 27 0.00058 28.8 3.0 19 2-20 27-45 (83)
7 KOG4438 Centromere-associated 24.2 78 0.0017 34.5 3.5 42 6-47 385-431 (446)
8 PLN02594 phosphatidate cytidyl 23.5 3.2E+02 0.0069 29.0 7.8 61 370-434 88-148 (342)
9 PF09746 Membralin: Tumour-ass 22.6 33 0.00072 36.6 0.5 15 421-435 343-357 (375)
10 PF04290 DctQ: Tripartite ATP- 22.6 1.1E+02 0.0023 26.2 3.6 29 16-44 55-83 (133)
11 PF03788 LrgA: LrgA family; I 20.2 1.2E+02 0.0027 26.0 3.4 41 377-420 42-82 (96)
12 PF04021 Class_IIIsignal: Clas 20.1 1.7E+02 0.0036 20.2 3.3 23 21-43 2-24 (28)
No 1
>PF09746 Membralin: Tumour-associated protein; InterPro: IPR019144 Membralin is evolutionarily highly conserved, though it appears to represent a unique protein family. The protein appears to contain several transmembrane regions. In humans it is expressed in certain cancers, particularly ovarian cancers []. Membralin-like gene homologues have been identified in plants including grape, cotton and tomato [].
Probab=100.00 E-value=1.1e-96 Score=745.87 Aligned_cols=338 Identities=26% Similarity=0.409 Sum_probs=248.5
Q ss_pred cchHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhcc-CCCCCcccccccccCccceEEEEEeecCCCCCC
Q 013251 4 EHTFIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYV-QQPGCSSEFAGIRMTEAQLIQIKISSAGLWSQN 82 (447)
Q Consensus 4 ~~~f~rv~~~ya~~~~~~vRr~iEfi~Ll~AI~lf~iLvy~Hi~F~-~~~~Cl~~~~~~~wpr~giLrVeI~~n~~~~~~ 82 (447)
|-+|+|||.+|||+|||++||+|||++|+||+++|++|+|||++|+ +|++|++|+++. |||+||+||||+||. |..+
T Consensus 14 ha~f~r~a~~Yar~~p~~~Rr~iEf~~L~~Al~~~~iL~yIH~~F~rsp~tCL~~~~~~-wpR~GIlRveI~~n~-~~~~ 91 (375)
T PF09746_consen 14 HALFFRVALAYARLFPPPVRRFIEFIVLLKALFLFFILIYIHIAFSRSPITCLDHVKDD-WPRDGILRVEIVRNL-ESKN 91 (375)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHhhcc-ccccceeEEEEecCC-Cccc
Confidence 4589999999999999999999999999999999999999999999 889999999995 999999999999985 4444
Q ss_pred CCCCccccccccccchhhhhhhhhhhhhhcccCCcccccccccccCCCCcCCCccccccccccccccccccchHhhhhhh
Q 013251 83 DSDSNVVDVTSVDNAINELEVSGKLALKFWRTDMEPVEHLAEGSVSSQSFKPTDSAVNKIDKEEARNSFALSAKEAFKSA 162 (447)
Q Consensus 83 ~~~s~~~~~~~~~~~~e~l~i~~~~~~~f~k~~~~~~E~~~~~~~~~~~s~~~~d~~v~~~~e~~~~~~~~s~ke~~k~~ 162 (447)
...+++ ++++..+...+- ...+++.+.++. + .+.+. ..... .+.
T Consensus 92 i~~~~~-~ee~L~r~~qep-----~s~siEpsTtee--e---lt~el-~~~~s----~kl-------------------- 135 (375)
T PF09746_consen 92 IFQQYY-DEESLLRNVQEP-----GSYSIEPSTTEE--E---LTTEL-FQNSS----IKL-------------------- 135 (375)
T ss_pred hhhhhh-hhcchhhhhccc-----cccCcCccccch--h---hhHhh-hhccc----ccc--------------------
Confidence 433332 232222222111 011112111100 0 00000 00000 000
Q ss_pred hhcccccccchhhHHHHHHHHHHHHHHhhhhhhccccccCccccccchhhccchhhhhhhhh-------hccccCCceEE
Q 013251 163 IIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLE-------NRTKAFEPTYL 235 (447)
Q Consensus 163 ~~~~~~k~~~~~S~~~~~~~~i~~~~~klw~i~g~~~nld~~k~~~~~~~d~l~~~~v~~~e-------~~~~~~e~~ye 235 (447)
+.. -.++.|. |+..+....|..+.....+++ +.....+|+||
T Consensus 136 ----~~~---~~~~~~~------------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~y~ve 184 (375)
T PF09746_consen 136 ----ESD---LEPSFLS------------------------SDSSLNNTFDEDNISDTFDFEEIMQLKNKVWPQDEYIVE 184 (375)
T ss_pred ----ccc---ccccccC------------------------CcccccccccccccccccccchhhcccccCCcccceeEE
Confidence 000 0000000 000000001111100000110 11123689999
Q ss_pred EeeeceeeccCcccccccCceeEEEEeCC-CCCCCcchHHHHHHhhhccchhHHhhhhcc----cCCceeEEecccCeEE
Q 013251 236 YTMEKGYFLLPEADKSRHNIRTFNISISA-QHPCFGNRWQQLLINRFVGYDTILMNSLLH----TPGQGYLYNCQTKEFY 310 (447)
Q Consensus 236 YSlE~G~L~Ls~~aR~~~nIpt~~V~L~~-~~~CFG~~~~~lll~~fvGYD~ilmnsl~~----~~gkGYLrN~~S~E~y 310 (447)
||+||||||||+++|++|||||++|+||+ +|+||||+|+|+++++|+||||++|+|+|+ ++|||||||++|||||
T Consensus 185 YsleyG~LrLs~~~r~~~nI~~~~v~ldp~~~~CfG~~~~r~ll~~f~GYd~~lm~s~k~la~~e~~~GyL~n~~t~e~y 264 (375)
T PF09746_consen 185 YSLEYGFLRLSEATRQRHNIPVMVVTLDPAKDQCFGDRFSRLLLDEFLGYDDILMSSLKTLAENEDNKGYLRNVVTGEHY 264 (375)
T ss_pred eehhcchhcCCHHHHhhcCCeEEEEEECCCCCCccCchHHHHhhhhhcCccHHHHHHHHHHhcCCCCceeeeecccccce
Confidence 99999999999999999999999999996 899999999999999999999999999995 6899999999999999
Q ss_pred eeecccCCCCCCcccchhhhhhHhhHHHHHHHHHHhhhhhHHHHHhhhhhHHHHHHHHHHhcc----ccccchhHHHHHH
Q 013251 311 NLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQ----HRLPTFQLIFVHV 386 (447)
Q Consensus 311 ~l~~~~~~~~~~ar~~~ylv~k~~Vli~slFv~f~fT~~VS~lLR~tq~qi~~Fiv~l~~~~~----~~~P~a~Li~~~v 386 (447)
||+++|. ++| ++|+ +++|+|++||++|||||||||||||+||||||||++ +.+|+|||+ +|
T Consensus 265 ~fv~~~~----~~r-~sy~--------~a~~~m~~ft~svs~lLR~s~~qif~fiv~ll~~~~~~~~~~~p~a~ll--t~ 329 (375)
T PF09746_consen 265 RFVSMWW----MAR-SSYL--------AAFFVMLIFTFSVSMLLRYSHHQIFVFIVDLLQMLEHNLPIFFPAAPLL--TV 329 (375)
T ss_pred ehhhhhh----hhc-cHHH--------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCccccccceee--ee
Confidence 9998862 456 6786 578899999999999999999999999999999765 455667766 56
Q ss_pred HHHhhhhHHHHHHHHHHHHhhCcchhHHHHHHHHHHhhhhhhHHH
Q 013251 387 IESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLIRY 431 (447)
Q Consensus 387 i~aLVfvpvmvGm~~fm~EFf~D~~~AF~ViliVWlad~f~~is~ 431 (447)
|++ ||||||||||||||++|||||||+||+|||||||||
T Consensus 330 il~------lvgm~~~m~eff~d~~~af~vil~vw~~d~~~~i~c 368 (375)
T PF09746_consen 330 ILA------LVGMEAIMSEFFNDTTTAFYVILIVWLADQYDAICC 368 (375)
T ss_pred ehh------hHHHHHHHHHHhcchhHHHHHHHHHHHHhhccEEEe
Confidence 555 559999999999999999999999999999999997
No 2
>KOG2092 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.2e-52 Score=411.01 Aligned_cols=307 Identities=21% Similarity=0.224 Sum_probs=220.5
Q ss_pred chHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhcc-CCCCCcccccccccCccceEEEEEeecCCC-CCC
Q 013251 5 HTFIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYV-QQPGCSSEFAGIRMTEAQLIQIKISSAGLW-SQN 82 (447)
Q Consensus 5 ~~f~rv~~~ya~~~~~~vRr~iEfi~Ll~AI~lf~iLvy~Hi~F~-~~~~Cl~~~~~~~wpr~giLrVeI~~n~~~-~~~ 82 (447)
.++.|+|..|++.+||..||++|+..|++|.+++..|+|||++|+ +|.+|++++++. |||.||+|||+.+..+. ...
T Consensus 55 al~~~~a~~Ys~~~~~~frrl~egs~lf~a~lvl~~l~~ihi~F~rsp~scl~~~r~~-w~R~gi~rVev~~H~s~r~p~ 133 (381)
T KOG2092|consen 55 ALQNSAAQGYSYYQTREFRRLPEGSALFGAYLVLKCLVLIHILFVRSPMSCLFTLRET-WTRMGIFRVEVQHHASHRLPT 133 (381)
T ss_pred HHHHHHhhhhhhccCHHHHhccchHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhh-hhhheeEEEEEEecchhcchH
Confidence 478999999999999999999999999999999999999999999 999999999996 99999999999974321 100
Q ss_pred CCCCccccc-cccccchhhhhhhhhhhhhhcccCCcccccccccccCCCCcCCCcccccccccccccccccc---chHhh
Q 013251 83 DSDSNVVDV-TSVDNAINELEVSGKLALKFWRTDMEPVEHLAEGSVSSQSFKPTDSAVNKIDKEEARNSFAL---SAKEA 158 (447)
Q Consensus 83 ~~~s~~~~~-~~~~~~~e~l~i~~~~~~~f~k~~~~~~E~~~~~~~~~~~s~~~~d~~v~~~~e~~~~~~~~---s~ke~ 158 (447)
. ...-.++ ++..-..-.+|+.+++. .+.. |+.....-+ +..|.
T Consensus 134 F-l~f~~~~~~~~vF~~~aI~i~s~l~-~~~~-------------------------------e~~e~~m~~~~~~~~~~ 180 (381)
T KOG2092|consen 134 F-LLFFVHVIESLVFVPIAIGILSFLF-EFYD-------------------------------EQLEAFMVLVLVWLCEL 180 (381)
T ss_pred H-HHHHhhhcccccccchhhhHHHhhH-HHhc-------------------------------ccHHHHHHHHHHHHHHh
Confidence 0 0000000 00000011112211111 1111 111111000 00000
Q ss_pred hhhhhh--cccccccchhhHHHHHHHHHHHHHHhhhhhhccccccCccccccchhhccch-hhhhhhhhh---ccccCCc
Q 013251 159 FKSAII--HFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIH-SYAVQWLEN---RTKAFEP 232 (447)
Q Consensus 159 ~k~~~~--~~~~k~~~~~S~~~~~~~~i~~~~~klw~i~g~~~nld~~k~~~~~~~d~l~-~~~v~~~e~---~~~~~e~ 232 (447)
+.+... ...|| -...+.+| +.+....+. --+.++|
T Consensus 181 f~ld~e~~~i~k~---------------------------------------~~p~e~Lnd~~e~~fh~~~f~~~~g~~Y 221 (381)
T KOG2092|consen 181 FTLDSERTPISKK---------------------------------------FFPREFLNDLYELVFHIYFFSYAYGFSY 221 (381)
T ss_pred eeeecccccccCC---------------------------------------CCcHHHhcchhhcccchhhhhhccCchH
Confidence 000000 00011 00112222 122212221 1234778
Q ss_pred eEEEeeeceeeccCcccccccCceeEEEEeCCCCCCCcchHHHHHHhhhccchhHHhhhhcc----cCCceeEEecccCe
Q 013251 233 TYLYTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLH----TPGQGYLYNCQTKE 308 (447)
Q Consensus 233 ~yeYSlE~G~L~Ls~~aR~~~nIpt~~V~L~~~~~CFG~~~~~lll~~fvGYD~ilmnsl~~----~~gkGYLrN~~S~E 308 (447)
.+||+++||+|+|++..|+|++||+++++||+++|||||+..|++|+.|+||||+++.+++. ..++||++|.||+|
T Consensus 222 ~veyt~~yg~lrL~~~fr~r~~IP~~~~~ldt~~Qcfgdq~~rl~i~~f~gy~dtl~~tl~~~a~N~~~~G~lhn~q~~e 301 (381)
T KOG2092|consen 222 LVEYTTAYGMLRLILYFRNRFEIPALQRFLDTSRQCFGDQHPRLHITSFTGYADTLHITLNRTARNRTPSGPLHNTQNTE 301 (381)
T ss_pred HHHHHHHHHHHhccHHHHHhcCCceEEEEecchhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhccCCCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999874 68899999999999
Q ss_pred EEeeecccCCCCCCcccchhhhhhHhhHHHHHHHHHHhhhhhHHHHHhhhhhHHHHHHHHHHh----ccccccchhHHHH
Q 013251 309 FYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHH----AQHRLPTFQLIFV 384 (447)
Q Consensus 309 ~y~l~~~~~~~~~~ar~~~ylv~k~~Vli~slFv~f~fT~~VS~lLR~tq~qi~~Fiv~l~~~----~~~~~P~a~Li~~ 384 (447)
||+|+.++ .++ ++|+.+.. +|.+||+++||+|||+|||||+||+||+++ +.+..|+|||+
T Consensus 302 hy~Fva~~-----~g~-asYl~a~a--------~m~ifT~~~smllryshhqifvFi~dll~m~el~~a~~~p~apll-- 365 (381)
T KOG2092|consen 302 HYSFVADG-----GGV-ASYLEAQA--------EMEIFTVPASMLLRYSHHQIFVFISDLLLMWELGGASSEPLAPLL-- 365 (381)
T ss_pred eEEEeecc-----ccH-HHHHHHhh--------hHhheeccccccccccccceeehHHHHHHHHHhCCCCCcccchHH--
Confidence 99999875 344 68985443 455669999999999999999999999986 46788999998
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhC
Q 013251 385 HVIESLVFVPIMIGILFFLFEFYD 408 (447)
Q Consensus 385 ~vi~aLVfvpvmvGm~~fm~EFf~ 408 (447)
+|+++|| ||+ |+|||+
T Consensus 366 tv~lalv------g~~--~aefF~ 381 (381)
T KOG2092|consen 366 TVFLALV------GED--EAEFFA 381 (381)
T ss_pred HHHHHHh------Cch--hhhhcC
Confidence 9999999 999 999996
No 3
>KOG2092 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=3e-30 Score=255.55 Aligned_cols=186 Identities=69% Similarity=1.103 Sum_probs=176.3
Q ss_pred EeeeceeeccCcccccccCceeEEEEeCCCCCCCcchHHHHHHhhhccchhHHhhhhcccCCceeEEecccCeEEeeecc
Q 013251 236 YTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYA 315 (447)
Q Consensus 236 YSlE~G~L~Ls~~aR~~~nIpt~~V~L~~~~~CFG~~~~~lll~~fvGYD~ilmnsl~~~~gkGYLrN~~S~E~y~l~~~ 315 (447)
|.+++|+..+|++++-+||+ +-++.++++++|||++|++++.+.++||||.+++++.+.-+.||.| .+|.|.-|
T Consensus 1 ~~~~~~~~~~P~~~~p~~N~-~~~~~~~ar~P~~pn~~q~~~~N~lv~~rdrlfhal~~~~a~~Ys~-~~~~~frr---- 74 (381)
T KOG2092|consen 1 YTMEKGYFLLPDEAKPRHNI-TANVSISARHPCFPNRWQQLLINRLVGYRDRLFHALQNSAAQGYSY-YQTREFRR---- 74 (381)
T ss_pred CchhhcccCCCCCCCCCCCC-CCCCCcccCCCCCCchhhhhcccccccHHHHHHHHHHHHHhhhhhh-ccCHHHHh----
Confidence 57899999999999999999 6889999999999999999999999999999999999999999999 88888744
Q ss_pred cCCCCCCcccchhhhhhHhhHHHHHHHHHHhhhhhHHHHHhhhhhHHHHHHHHHHhccccccchhHHHHHHHHHhhhhHH
Q 013251 316 QEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPI 395 (447)
Q Consensus 316 ~~~~~~~ar~~~ylv~k~~Vli~slFv~f~fT~~VS~lLR~tq~qi~~Fiv~l~~~~~~~~P~a~Li~~~vi~aLVfvpv 395 (447)
.|++++-|+.|++.||+++|+++|+. +++++++++|+++.||..|.|++++|..++.|++.++++|++.++||+|+
T Consensus 75 --l~egs~lf~a~lvl~~l~~ihi~F~r--sp~scl~~~r~~w~R~gi~rVev~~H~s~r~p~Fl~f~~~~~~~~vF~~~ 150 (381)
T KOG2092|consen 75 --LPEGSALFGAYLVLKCLVLIHILFVR--SPMSCLFTLRETWTRMGIFRVEVQHHASHRLPTFLLFFVHVIESLVFVPI 150 (381)
T ss_pred --ccchHHHHHHHHHHHHHHHHHHHhhc--CchHHHHHHHhhhhhheeEEEEEEecchhcchHHHHHHhhhcccccccch
Confidence 56677888999999999999999988 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCcchhHHHHHHHHHHhhhhhhHHH
Q 013251 396 MIGILFFLFEFYDDQLLAFLVLILVWLCELFTLIRY 431 (447)
Q Consensus 396 mvGm~~fm~EFf~D~~~AF~ViliVWlad~f~~is~ 431 (447)
+||+..+++||++|+..|||+++.+|+|+.|.+++.
T Consensus 151 aI~i~s~l~~~~~e~~e~~m~~~~~~~~~~f~ld~e 186 (381)
T KOG2092|consen 151 AIGILSFLFEFYDEQLEAFMVLVLVWLCELFTLDSE 186 (381)
T ss_pred hhhHHHhhHHHhcccHHHHHHHHHHHHHHheeeecc
Confidence 999999999999999999999999999999988763
No 4
>PF03268 DUF267: Caenorhabditis protein of unknown function, DUF267; InterPro: IPR004950 This family of proteins, from Caenorhabditis species, have not been characterised though a number are annotated as 'serpentine receptor, class r' proteins.
Probab=52.57 E-value=45 Score=35.34 Aligned_cols=45 Identities=18% Similarity=0.449 Sum_probs=33.5
Q ss_pred cchhHHHHHHHHHhhhhHHHHHHHHHHHHhhCcchhHHHHHHHHHHhhhhhhHHHHHHHH
Q 013251 377 PTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLIRYIFLSL 436 (447)
Q Consensus 377 P~a~Li~~~vi~aLVfvpvmvGm~~fm~EFf~D~~~AF~ViliVWlad~f~~is~~~~~~ 436 (447)
-.||+. ++.|++ --.++.++|.++.++-.+|+++-|+ +|||+.+.
T Consensus 233 ~~aPlf---~f~a~i------N~~Yi~s~F~~~~p~~y~i~li~~l------~a~i~~t~ 277 (353)
T PF03268_consen 233 TFAPLF---CFYALI------NAVYIVSSFFSSVPLLYFICLIFNL------IAIIFITF 277 (353)
T ss_pred hHHHHH---HHHHHH------HHHHhhhhhccCCchHHHHHHHHHH------HHHHHHHH
Confidence 346663 555555 5578999999999999999999986 46666554
No 5
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=47.63 E-value=2.1e+02 Score=27.01 Aligned_cols=105 Identities=11% Similarity=0.198 Sum_probs=54.7
Q ss_pred ccCCceeEEecccCeEEeeecccCCCCCCcccchhhhhhHhhHHHHHHHHHHhhhhhHHHHHhhhhhHHHHHHHHHHhcc
Q 013251 294 HTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQ 373 (447)
Q Consensus 294 ~~~gkGYLrN~~S~E~y~l~~~~~~~~~~ar~~~ylv~k~~Vli~slFv~f~fT~~VS~lLR~tq~qi~~Fiv~l~~~~~ 373 (447)
+|.++|=++-.-|.-. .| .+++.+|+...+..-.+ ++.+..+++++ ..-+.....
T Consensus 92 ~E~e~gTi~~lls~Pi-------------sR-~~i~~gK~l~~~~~~l~-~~~~~~~~~~~----------~~~~~~~~~ 146 (277)
T PF12679_consen 92 GERERGTIELLLSKPI-------------SR-SEILLGKFLAAILFSLL-LLIALLVGYLL----------TLVLIAISG 146 (277)
T ss_pred hccccCEeeHHhcCCC-------------cH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHH----------HHHHHHHhh
Confidence 4666777666554322 23 56777777555433111 33344455443 111222233
Q ss_pred ccccchhHHHHHHHHHhhhhH--HHHHHHHHHHHhhCcchhHHHHHHHHHHh
Q 013251 374 HRLPTFQLIFVHVIESLVFVP--IMIGILFFLFEFYDDQLLAFLVLILVWLC 423 (447)
Q Consensus 374 ~~~P~a~Li~~~vi~aLVfvp--vmvGm~~fm~EFf~D~~~AF~ViliVWla 423 (447)
...+..+.....+...++... +..|+-.++|=+++++..|.-+.+.+|+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~ 198 (277)
T PF12679_consen 147 IPIDLSSFLLLLLLFVLLLLAVLVFISLGLLISSLFRSSASAILASLGLLFL 198 (277)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence 333433332222222222222 34678888899999999888888777764
No 6
>PF00317 Ribonuc_red_lgN: Ribonucleotide reductase, all-alpha domain; InterPro: IPR013509 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The reduction of ribonucleotides to deoxyribonucleotides involves the transfer of free radicals, the function of each metallocofactor is to generate an active site thiyl radical. This thiyl radical then initiates the nucleotide reduction process by hydrogen atom abstraction from the ribonucleotide []. The radical-based reaction involves five cysteines: two of these are located at adjacent anti-parallel strands in a new type of ten-stranded alpha/beta-barrel; two others reside at the carboxyl end in a flexible arm; and the fifth, in a loop in the centre of the barrel, is positioned to initiate the radical reaction []. There are several regions of similarity in the sequence of the large chain of prokaryotes, eukaryotes and viruses spread across 3 domains: an N-terminal domain common to the mammalian and bacterial enzymes; a C-terminal domain common to the mammalian and viral ribonucleotide reductases; and a central domain common to all three [].; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0005524 ATP binding, 0006260 DNA replication, 0055114 oxidation-reduction process; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A 1XJN_A 1XJK_A 3O0O_B 1XJF_A 3O0Q_A ....
Probab=42.07 E-value=27 Score=28.77 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=16.8
Q ss_pred CccchHHHHHHHHhhccCc
Q 013251 2 DPEHTFIRVQERFSRVLTP 20 (447)
Q Consensus 2 ~~~~~f~rv~~~ya~~~~~ 20 (447)
+|+|+|.|||...|..-++
T Consensus 27 tpq~~~~RVA~~la~~e~~ 45 (83)
T PF00317_consen 27 TPQEMFMRVAMALASAEPK 45 (83)
T ss_dssp SHHHHHHHHHHHHHTCCGG
T ss_pred CHHHHHHHHHHHHHHHccc
Confidence 6999999999999987763
No 7
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=24.15 E-value=78 Score=34.50 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=34.9
Q ss_pred hHHHHHHHHh-----hccCcchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 013251 6 TFIRVQERFS-----RVLTPRVRAYLEYIYLFIAITLFCVLVVMHAN 47 (447)
Q Consensus 6 ~f~rv~~~ya-----~~~~~~vRr~iEfi~Ll~AI~lf~iLvy~Hi~ 47 (447)
+..++++.+. ..+-+.+|+.-||-+.++||.++|+|..+|++
T Consensus 385 ~~~kie~~~~~ik~~e~~l~~~~~r~e~~~~i~aI~l~~~llk~HV~ 431 (446)
T KOG4438|consen 385 KVKKIEEKNEEIKKIELFLEIARGREELESQIVAITLECILLKMHVE 431 (446)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777774 33348899999999999999999999999975
No 8
>PLN02594 phosphatidate cytidylyltransferase
Probab=23.52 E-value=3.2e+02 Score=29.04 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=37.6
Q ss_pred HhccccccchhHHHHHHHHHhhhhHHHHHHHHHHHHhhCcchhHHHHHHHHHHhhhhhhHHHHHH
Q 013251 370 HHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLIRYIFL 434 (447)
Q Consensus 370 ~~~~~~~P~a~Li~~~vi~aLVfvpvmvGm~~fm~EFf~D~~~AF~ViliVWlad~f~~is~~~~ 434 (447)
+......+..++-.+|+..-+| ++. .-+++..-++.-...++.+++||.+|.+.-+|-.+.
T Consensus 88 ~k~~~k~qf~~~a~t~~~llyV--~~~--~~~ii~ni~~G~~w~~l~~~lV~~nDi~AY~~G~~f 148 (342)
T PLN02594 88 KKGMYKYQFGQYAWTHMILIVV--FTQ--SSFTVANIFEGIFWFLLPASLIVINDIAAYLFGFFF 148 (342)
T ss_pred HhccccccHHHHHHHHHHHHHH--HHH--HHHHHHHccccHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 3444455555554445443333 332 333444556666778888999999999988776554
No 9
>PF09746 Membralin: Tumour-associated protein; InterPro: IPR019144 Membralin is evolutionarily highly conserved, though it appears to represent a unique protein family. The protein appears to contain several transmembrane regions. In humans it is expressed in certain cancers, particularly ovarian cancers []. Membralin-like gene homologues have been identified in plants including grape, cotton and tomato [].
Probab=22.62 E-value=33 Score=36.56 Aligned_cols=15 Identities=13% Similarity=0.228 Sum_probs=8.3
Q ss_pred HHhhhhhhHHHHHHH
Q 013251 421 WLCELFTLIRYIFLS 435 (447)
Q Consensus 421 Wlad~f~~is~~~~~ 435 (447)
..-|+-.|..+|.+-
T Consensus 343 ff~d~~~af~vil~v 357 (375)
T PF09746_consen 343 FFNDTTTAFYVILIV 357 (375)
T ss_pred HhcchhHHHHHHHHH
Confidence 445555666666543
No 10
>PF04290 DctQ: Tripartite ATP-independent periplasmic transporters, DctQ component; InterPro: IPR007387 The function of the members of this family is unknown, but DctQ homologues are invariably found in the tripartite ATP-independent periplasmic transporters [].
Probab=22.56 E-value=1.1e+02 Score=26.21 Aligned_cols=29 Identities=31% Similarity=0.529 Sum_probs=23.3
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHHHHh
Q 013251 16 RVLTPRVRAYLEYIYLFIAITLFCVLVVM 44 (447)
Q Consensus 16 ~~~~~~vRr~iEfi~Ll~AI~lf~iLvy~ 44 (447)
..+||+.||.++.+..+.+++.+.+++|-
T Consensus 55 ~~l~~~~~~~~~~i~~~~~~~~~~~l~~~ 83 (133)
T PF04290_consen 55 DRLPPRLRRILDIIASLLILVFFAVLAWY 83 (133)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45599999999999988777777766653
No 11
>PF03788 LrgA: LrgA family; InterPro: IPR005538 This family is represented by: YohJ, an inner membrane protein with four predicted transmembrane domains; the C terminus is located in the periplasm []. LrgA, a protein that has been hypothesised to export murein hydrolases []. In Staphylococcus aureus, lrg and cid operons encode homologous proteins that regulate extracellular murein hydrolase activity and penicillin tolerance [, ]. Since the proteins encoded by cidA and lrgA are so similar to the bacteriophage-encoded holin family of proteins, they are considered analogous []. The proteins in this entry are functionally uncharacterised.; GO: 0016021 integral to membrane
Probab=20.15 E-value=1.2e+02 Score=26.02 Aligned_cols=41 Identities=29% Similarity=0.487 Sum_probs=29.2
Q ss_pred cchhHHHHHHHHHhhhhHHHHHHHHHHHHhhCcchhHHHHHHHH
Q 013251 377 PTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILV 420 (447)
Q Consensus 377 P~a~Li~~~vi~aLVfvpvmvGm~~fm~EFf~D~~~AF~ViliV 420 (447)
+++..+. --.++.|+|+.+|+...... +.+.-.++.+++++
T Consensus 42 ~~a~~Ll--~~m~lfFvPa~VGi~~~~~~-l~~~~~~i~~~i~v 82 (96)
T PF03788_consen 42 PAANFLL--KNMALFFVPAGVGIMEYFDL-LAQEGLPILVVIVV 82 (96)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 4555443 34578899999999877654 67777777777665
No 12
>PF04021 Class_IIIsignal: Class III signal peptide; InterPro: IPR007166 This entry represents an amino terminal motif QXSXEXXXL thought to be part of a class III signal sequence for a family of archaeal proteins. The Q residue is the +1 residue of the signal peptidase cleavage site []. Two proteins containing this motif are cleaved by a type IV pilin-like signal peptidase.
Probab=20.07 E-value=1.7e+02 Score=20.17 Aligned_cols=23 Identities=30% Similarity=0.584 Sum_probs=17.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH
Q 013251 21 RVRAYLEYIYLFIAITLFCVLVV 43 (447)
Q Consensus 21 ~vRr~iEfi~Ll~AI~lf~iLvy 43 (447)
|..-.+||+.|+.|+++..+.+-
T Consensus 2 rGQ~SlE~~ili~~vlv~~~i~~ 24 (28)
T PF04021_consen 2 RGQISLEFIILIAAVLVIAIIVI 24 (28)
T ss_pred ccHHhHHHHHHHHHHHHHHHHHH
Confidence 45678999999998887776654
Done!