Query 013251
Match_columns 447
No_of_seqs 81 out of 83
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 07:03:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013251.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013251hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vf5_H Protein PET N; photosyn 12.6 1.1E+02 0.0038 20.6 2.0 13 343-355 12-24 (29)
2 1q90_N Cytochrome B6F complex 12.1 1.2E+02 0.004 20.8 2.0 13 343-355 14-26 (31)
3 2nx7_A Nematocyst outer WALL a 10.8 62 0.0021 21.2 0.3 8 50-57 8-15 (28)
4 2kv5_A FST, putative uncharact 7.9 2.9E+02 0.01 19.1 2.7 18 390-407 7-24 (33)
5 1e0n_A Hypothetical protein; Y 7.9 1.9E+02 0.0066 18.5 1.8 16 294-309 7-22 (27)
6 1d1r_A Hypothetical 11.4 KD pr 7.0 2E+02 0.0069 24.7 2.0 34 45-78 7-42 (116)
7 2pbi_A Regulator of G-protein 6.9 1.7E+02 0.0059 30.0 1.8 46 266-314 49-107 (424)
8 2cso_A Pleckstrin; DEP domain, 6.3 2.4E+02 0.0082 24.5 2.1 50 253-304 30-85 (127)
9 3n57_C Atrial natriuretic fact 5.4 1.5E+02 0.0052 19.8 0.2 11 265-275 4-14 (28)
10 2ysi_A Transcription elongatio 5.3 3E+02 0.01 18.9 1.7 15 294-308 17-31 (40)
No 1
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=12.63 E-value=1.1e+02 Score=20.60 Aligned_cols=13 Identities=15% Similarity=0.248 Sum_probs=9.0
Q ss_pred HHHhhhhhHHHHH
Q 013251 343 FFTTTMSVSFTLR 355 (447)
Q Consensus 343 ~f~fT~~VS~lLR 355 (447)
|.+||+|+|++.+
T Consensus 12 mvvftfSlslVVW 24 (29)
T 1vf5_H 12 LVVFTWSIAMVVW 24 (29)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhheeeeEEEE
Confidence 3445779998865
No 2
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=12.06 E-value=1.2e+02 Score=20.77 Aligned_cols=13 Identities=15% Similarity=0.207 Sum_probs=9.1
Q ss_pred HHHhhhhhHHHHH
Q 013251 343 FFTTTMSVSFTLR 355 (447)
Q Consensus 343 ~f~fT~~VS~lLR 355 (447)
|.+||+|+|++.+
T Consensus 14 mvvfTfSlslVVW 26 (31)
T 1q90_N 14 CVMFSFSLSLVVW 26 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhheeeEEEEE
Confidence 4445789998865
No 3
>2nx7_A Nematocyst outer WALL antigen; cysteine rich, disulfide bonds, rich in turns, structural protein; NMR {Hydra vulgaris}
Probab=10.83 E-value=62 Score=21.20 Aligned_cols=8 Identities=88% Similarity=1.477 Sum_probs=6.4
Q ss_pred CCCCCccc
Q 013251 50 QQPGCSSE 57 (447)
Q Consensus 50 ~~~~Cl~~ 57 (447)
|||||++.
T Consensus 8 qqpgcssa 15 (28)
T 2nx7_A 8 QQPGCSSA 15 (28)
T ss_dssp HSTTCCGG
T ss_pred cCCCcccc
Confidence 78999874
No 4
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=7.94 E-value=2.9e+02 Score=19.06 Aligned_cols=18 Identities=28% Similarity=0.626 Sum_probs=13.0
Q ss_pred hhhhHHHHHHHHHHHHhh
Q 013251 390 LVFVPIMIGILFFLFEFY 407 (447)
Q Consensus 390 LVfvpvmvGm~~fm~EFf 407 (447)
++-.|+.||+.--|++-.
T Consensus 7 ~IIaPivVGvvl~L~d~W 24 (33)
T 2kv5_A 7 LVIAPIFVGLVLEMISRV 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344788899987777654
No 5
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=7.90 E-value=1.9e+02 Score=18.50 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=13.0
Q ss_pred ccCCceeEEecccCeE
Q 013251 294 HTPGQGYLYNCQTKEF 309 (447)
Q Consensus 294 ~~~gkGYLrN~~S~E~ 309 (447)
.+.|+-|.||..|||-
T Consensus 7 ~~~g~~YYyN~~T~~s 22 (27)
T 1e0n_A 7 HENGRPLYYNAEQKTK 22 (27)
T ss_dssp ESSSSEEEEETTTTEE
T ss_pred CCCCCeEEEECCCCCE
Confidence 3678899999999873
No 6
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=6.97 E-value=2e+02 Score=24.67 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=12.7
Q ss_pred hhhccCCCC--CcccccccccCccceEEEEEeecCC
Q 013251 45 HANYVQQPG--CSSEFAGIRMTEAQLIQIKISSAGL 78 (447)
Q Consensus 45 Hi~F~~~~~--Cl~~~~~~~wpr~giLrVeI~~n~~ 78 (447)
+..||+.++ |-+.-....=|++|.++|.+.|+|.
T Consensus 7 ~~vyst~~~~~~~~~~~~~~p~~~~~V~I~~er~gR 42 (116)
T 1d1r_A 7 RLVYSTETGRIDEPKAAPVRPKGDGVVRIQRQTSGR 42 (116)
T ss_dssp ---------------------CCCCEEEEEECCCSS
T ss_pred cEEEeCCCCccCccccccCCCCCCCeEEEEEEeCCC
Confidence 456775444 5443223223578999999998765
No 7
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=6.86 E-value=1.7e+02 Score=30.03 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=32.3
Q ss_pred CCCC-cchHHHHHHhhhccchhHHhhhhcc---cCCceeEEeccc---------CeEEeeec
Q 013251 266 HPCF-GNRWQQLLINRFVGYDTILMNSLLH---TPGQGYLYNCQT---------KEFYNLSY 314 (447)
Q Consensus 266 ~~CF-G~~~~~lll~~fvGYD~ilmnsl~~---~~gkGYLrN~~S---------~E~y~l~~ 314 (447)
..|| |..+..||++++ +.++ --++.- --..||++.+.. +-+|||..
T Consensus 49 p~~F~Gsd~V~WL~~~~-~~~~--~EA~~lg~~L~~~Gyi~~v~d~~~~~fk~d~~~Yrfq~ 107 (424)
T 2pbi_A 49 PHAMTGGDVLQWITQRL-WISN--LEAQNLGNFIVKYGYIYPLQDPKNLILKPDSSLYRFQT 107 (424)
T ss_dssp CCCEEHHHHHHHHHHHH-TCCH--HHHHHHHHHHHHTTSEEESSSTTCCSCCSSSCEEEECC
T ss_pred CCccccHHHHHHHHHcC-CCCh--HHHHHHHHHHHHCCCEEeCCccccccccCCCeeEEeCC
Confidence 5899 999999999998 5555 233321 234688888754 45789974
No 8
>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31
Probab=6.29 E-value=2.4e+02 Score=24.48 Aligned_cols=50 Identities=24% Similarity=0.452 Sum_probs=29.8
Q ss_pred cCceeEEEEeCCC--CCCC-cchHHHHHHhhhcc---chhHHhhhhcccCCceeEEec
Q 013251 253 HNIRTFNISISAQ--HPCF-GNRWQQLLINRFVG---YDTILMNSLLHTPGQGYLYNC 304 (447)
Q Consensus 253 ~nIpt~~V~L~~~--~~CF-G~~~~~lll~~fvG---YD~ilmnsl~~~~gkGYLrN~ 304 (447)
.+|+........+ ..|| |..+.+||+++..= -+.+.+.+.+ -..||++.+
T Consensus 30 ~GV~~~~r~~~~~~~~~cF~GsdlVdWLl~~~~~~sR~EAv~lg~~L--l~~G~i~hV 85 (127)
T 2cso_A 30 KGIKELNLEKDKKIFNHCFTGNCVIDWLVSNQSVRNRQEGLMIASSL--LNEGYLQPA 85 (127)
T ss_dssp SSCCCEEEEETTEEEEEEEEHHHHHHHHHHTTSCSSHHHHHHHHHHH--HHHTSSEEE
T ss_pred CCceeeeEEeccEEecceeechHHHHHHHHcCCCCCHHHHHHHHHHH--HHCCeEEeC
Confidence 4566555555522 4899 99999999987510 1223332221 235888888
No 9
>3n57_C Atrial natriuretic factor; insulysin, insulinase, A-beta degrading enzyme, cryptidase, hydrolase, hormone, disease mutation, diabetes mellitus; 3.03A {Homo sapiens} PDB: 1anp_A
Probab=5.38 E-value=1.5e+02 Score=19.79 Aligned_cols=11 Identities=36% Similarity=1.008 Sum_probs=8.5
Q ss_pred CCCCCcchHHH
Q 013251 265 QHPCFGNRWQQ 275 (447)
Q Consensus 265 ~~~CFG~~~~~ 275 (447)
.+.|||.+..|
T Consensus 4 ~~gCFG~riDR 14 (28)
T 3n57_C 4 RSSCFGGRMDR 14 (28)
T ss_pred cccccCccccc
Confidence 36899988766
No 10
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=5.25 E-value=3e+02 Score=18.94 Aligned_cols=15 Identities=40% Similarity=0.758 Sum_probs=12.5
Q ss_pred ccCCceeEEecccCe
Q 013251 294 HTPGQGYLYNCQTKE 308 (447)
Q Consensus 294 ~~~gkGYLrN~~S~E 308 (447)
...|+=|.||..|||
T Consensus 17 ~~~G~~YYyN~~T~e 31 (40)
T 2ysi_A 17 TPDGKVYYYNARTRE 31 (40)
T ss_dssp CTTSCEEEEETTTCC
T ss_pred CCCCCEEEEECCCCC
Confidence 357888999999997
Done!