Query 013251
Match_columns 447
No_of_seqs 81 out of 83
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 07:03:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013251.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013251hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qzga1 a.29.14.1 (A:4-91) Unc 10.0 65 0.0047 24.8 2.1 9 18-26 26-34 (88)
2 d1o6wa1 b.72.1.1 (A:1-29) Spli 9.5 71 0.0052 19.8 1.8 17 293-309 8-24 (29)
3 d1ywia1 b.72.1.1 (A:15-42) Hun 8.6 76 0.0055 19.5 1.6 16 294-309 8-23 (28)
4 d1j8ka_ b.1.2.1 (A:) Fibronect 6.3 65 0.0047 22.4 0.5 40 200-240 1-40 (94)
5 d1koza_ g.3.6.2 (A:) Grammotox 5.7 1.2E+02 0.0089 19.2 1.5 17 49-66 10-28 (36)
6 d2f2ha2 b.30.5.11 (A:1-247) Pu 5.2 2.3E+02 0.017 24.5 3.8 16 63-78 59-74 (247)
7 d2csoa1 a.4.5.31 (A:8-122) Ple 4.8 98 0.0071 24.1 0.8 29 252-280 22-53 (115)
8 d2dk1a1 b.72.1.1 (A:7-44) WW d 4.8 1.4E+02 0.01 19.2 1.5 16 294-309 8-23 (38)
9 d1o6wa2 b.72.1.1 (A:30-75) Spl 4.3 1.8E+02 0.013 19.5 1.8 16 294-309 21-36 (46)
10 d1uzva_ b.115.1.1 (A:) Fucose- 4.0 1.7E+02 0.013 23.2 1.7 15 66-80 60-74 (114)
No 1
>d2qzga1 a.29.14.1 (A:4-91) Uncharacterized protein MMP1188 {Methanococcus maripaludis [TaxId: 39152]}
Probab=9.96 E-value=65 Score=24.77 Aligned_cols=9 Identities=22% Similarity=0.301 Sum_probs=4.2
Q ss_pred cCcchhhHH
Q 013251 18 LTPRVRAYL 26 (447)
Q Consensus 18 ~~~~vRr~i 26 (447)
+||.+||..
T Consensus 26 VPRNIRr~a 34 (88)
T d2qzga1 26 VPRNIRAAA 34 (88)
T ss_dssp SCHHHHHHH
T ss_pred CChHHHHHH
Confidence 444444443
No 2
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.53 E-value=71 Score=19.77 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=14.0
Q ss_pred cccCCceeEEecccCeE
Q 013251 293 LHTPGQGYLYNCQTKEF 309 (447)
Q Consensus 293 ~~~~gkGYLrN~~S~E~ 309 (447)
+..+|+=|-||.+|||-
T Consensus 8 ~~~~G~~YYyN~~T~eS 24 (29)
T d1o6wa1 8 KDASGRIYYYNTLTKKS 24 (29)
T ss_dssp ECTTCCEEEEETTTTEE
T ss_pred ECCCCCEEEeECCCCCE
Confidence 34688999999999983
No 3
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.63 E-value=76 Score=19.46 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=13.5
Q ss_pred ccCCceeEEecccCeE
Q 013251 294 HTPGQGYLYNCQTKEF 309 (447)
Q Consensus 294 ~~~gkGYLrN~~S~E~ 309 (447)
..+|+=|-||.+|||-
T Consensus 8 ~~~G~~YYyN~~T~eS 23 (28)
T d1ywia1 8 SPDGRTYYYNTETKQS 23 (28)
T ss_dssp ETTTEEEEEETTTTEE
T ss_pred CCCCCEEEeECCCCCE
Confidence 4678999999999983
No 4
>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.26 E-value=65 Score=22.39 Aligned_cols=40 Identities=20% Similarity=0.358 Sum_probs=23.5
Q ss_pred ccCccccccchhhccchhhhhhhhhhccccCCceEEEeeec
Q 013251 200 NLDVPKLMHLLYLDRIHSYAVQWLENRTKAFEPTYLYTMEK 240 (447)
Q Consensus 200 nld~~k~~~~~~~d~l~~~~v~~~e~~~~~~e~~yeYSlE~ 240 (447)
|+|-|..+++.... -++-.+.|-.-......|.++|....
T Consensus 1 ~~d~P~~l~v~~vt-~~sv~l~W~~p~~~~~~y~i~~~~~~ 40 (94)
T d1j8ka_ 1 NIDRPKGLAFTDVD-VDSIKIAWESPQGQVSRYRVTYSSPE 40 (94)
T ss_dssp CCCCCCCCEEEEEE-TTEEEEECCCCSSCCSCEEEEEEETT
T ss_pred CCCCCCCCEEEEec-CCEEEEEEeCCCccccceEEEEEeec
Confidence 67788776665332 24667788543333455667776543
No 5
>d1koza_ g.3.6.2 (A:) Grammotoxin SIA, GrTx {Tarantula (Grammostola spatulata) [TaxId: 432528]}
Probab=5.66 E-value=1.2e+02 Score=19.19 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=11.9
Q ss_pred cCCCCCccccc--ccccCcc
Q 013251 49 VQQPGCSSEFA--GIRMTEA 66 (447)
Q Consensus 49 ~~~~~Cl~~~~--~~~wpr~ 66 (447)
+|.+.|-.|+. . .|||+
T Consensus 10 sqtsdccphlacks-kwprn 28 (36)
T d1koza_ 10 SQTSDCCPHLACKS-KWPRN 28 (36)
T ss_dssp CSSSSSCTTEESCC-SSSSS
T ss_pred ccccccCcchhhcc-cCCce
Confidence 46677877773 4 49987
No 6
>d2f2ha2 b.30.5.11 (A:1-247) Putative glucosidase YicI, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.24 E-value=2.3e+02 Score=24.47 Aligned_cols=16 Identities=6% Similarity=0.135 Sum_probs=12.9
Q ss_pred cCccceEEEEEeecCC
Q 013251 63 MTEAQLIQIKISSAGL 78 (447)
Q Consensus 63 wpr~giLrVeI~~n~~ 78 (447)
-|.+|+|||+|+-...
T Consensus 59 sp~~~virV~i~h~~g 74 (247)
T d2f2ha2 59 SPQEGIVGVRIEHFQG 74 (247)
T ss_dssp CSSTTEEEEEEESCTT
T ss_pred ecCCCEEEEEEEeCCC
Confidence 5899999999986543
No 7
>d2csoa1 a.4.5.31 (A:8-122) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.79 E-value=98 Score=24.07 Aligned_cols=29 Identities=24% Similarity=0.542 Sum_probs=20.8
Q ss_pred ccCceeEEEEeCCC--CCCC-cchHHHHHHhh
Q 013251 252 RHNIRTFNISISAQ--HPCF-GNRWQQLLINR 280 (447)
Q Consensus 252 ~~nIpt~~V~L~~~--~~CF-G~~~~~lll~~ 280 (447)
..+|+...-....+ ..|| |.....||++.
T Consensus 22 ~~Gi~~~~~~~~~~~y~~cF~G~e~V~WL~~~ 53 (115)
T d2csoa1 22 EKGIKELNLEKDKKIFNHCFTGNCVIDWLVSN 53 (115)
T ss_dssp SSSCCCEEEEETTEEEEEEEEHHHHHHHHHHT
T ss_pred CCCceeeEeeeCCeeccccccHHHHHHHHHHc
Confidence 35676666555532 5799 99999999976
No 8
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.76 E-value=1.4e+02 Score=19.24 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.4
Q ss_pred ccCCceeEEecccCeE
Q 013251 294 HTPGQGYLYNCQTKEF 309 (447)
Q Consensus 294 ~~~gkGYLrN~~S~E~ 309 (447)
...|+=|-||..|||-
T Consensus 8 ~~~G~~YYyN~~T~eS 23 (38)
T d2dk1a1 8 TSEGYHYYYDLISGAS 23 (38)
T ss_dssp CSTTCCCEEESSSCCE
T ss_pred CCCCCEEEEECCCCCE
Confidence 4578899999999983
No 9
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.35 E-value=1.8e+02 Score=19.48 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=13.6
Q ss_pred ccCCceeEEecccCeE
Q 013251 294 HTPGQGYLYNCQTKEF 309 (447)
Q Consensus 294 ~~~gkGYLrN~~S~E~ 309 (447)
...|+=|-||..|||-
T Consensus 21 ~~~Gr~YYyN~~T~es 36 (46)
T d1o6wa2 21 TADGKVYYYNPTTRET 36 (46)
T ss_dssp CTTCCEEEEETTTTEE
T ss_pred CCCCCEEEEECCCCCE
Confidence 3688999999999983
No 10
>d1uzva_ b.115.1.1 (A:) Fucose-binding lectin II (PA-LII) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.98 E-value=1.7e+02 Score=23.23 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=13.1
Q ss_pred cceEEEEEeecCCCC
Q 013251 66 AQLIQIKISSAGLWS 80 (447)
Q Consensus 66 ~giLrVeI~~n~~~~ 80 (447)
.|.+||||+-||.-+
T Consensus 60 ~GkVrieV~~nGkps 74 (114)
T d1uzva_ 60 SGKVQVQVSVNGRPS 74 (114)
T ss_dssp TCEEEEEEEETTEEC
T ss_pred CceEEEEEEeCCccc
Confidence 799999999998754
Done!