Query 013253
Match_columns 447
No_of_seqs 545 out of 1595
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 01:58:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4332 Predicted sugar transp 100.0 2.4E-41 5.3E-46 281.0 26.1 425 1-433 1-430 (454)
2 PF05631 DUF791: Protein of un 100.0 9.2E-36 2E-40 263.4 33.0 335 4-339 1-335 (354)
3 COG2814 AraJ Arabinose efflux 100.0 2.7E-30 5.8E-35 234.3 33.4 344 51-431 27-383 (394)
4 PRK10406 alpha-ketoglutarate t 100.0 3.7E-29 8.1E-34 240.6 33.6 337 39-396 20-381 (432)
5 PRK09556 uhpT sugar phosphate 100.0 1.5E-29 3.2E-34 245.7 27.4 336 37-397 25-395 (467)
6 PRK03545 putative arabinose tr 100.0 1.9E-28 4.2E-33 232.8 33.2 337 55-430 27-376 (390)
7 PRK09705 cynX putative cyanate 100.0 1.9E-28 4.2E-33 232.5 32.5 317 56-409 28-357 (393)
8 PRK11551 putative 3-hydroxyphe 100.0 1.5E-28 3.3E-33 235.0 32.0 327 36-395 10-352 (406)
9 COG2271 UhpC Sugar phosphate p 100.0 2E-29 4.4E-34 225.3 23.1 340 32-395 20-390 (448)
10 PRK15075 citrate-proton sympor 100.0 3.6E-28 7.8E-33 233.9 32.6 336 39-393 13-373 (434)
11 TIGR00903 2A0129 major facilit 100.0 4.3E-28 9.4E-33 226.6 31.8 306 57-395 11-324 (368)
12 PRK09952 shikimate transporter 100.0 9.8E-28 2.1E-32 230.8 33.2 333 39-393 20-385 (438)
13 PRK10642 proline/glycine betai 100.0 7.8E-28 1.7E-32 234.8 32.3 332 40-391 15-382 (490)
14 PLN00028 nitrate transmembrane 100.0 5.8E-28 1.3E-32 234.4 30.3 326 57-406 56-404 (476)
15 PRK10489 enterobactin exporter 100.0 3.5E-28 7.6E-33 233.1 28.1 339 41-407 21-374 (417)
16 PRK11663 regulatory protein Uh 100.0 6.5E-28 1.4E-32 232.0 29.6 332 38-395 20-381 (434)
17 PRK10213 nepI ribonucleoside t 100.0 4.7E-27 1E-31 222.8 34.3 328 57-421 40-378 (394)
18 PRK05122 major facilitator sup 100.0 2.5E-27 5.3E-32 226.1 32.3 347 42-431 20-386 (399)
19 TIGR02332 HpaX 4-hydroxyphenyl 100.0 1.2E-27 2.7E-32 228.2 29.2 332 37-395 4-377 (412)
20 TIGR01299 synapt_SV2 synaptic 100.0 1E-27 2.2E-32 238.5 29.4 178 35-222 161-357 (742)
21 TIGR00891 2A0112 putative sial 100.0 1.5E-27 3.2E-32 228.2 29.2 348 35-409 6-392 (405)
22 PRK15402 multidrug efflux syst 100.0 9.6E-27 2.1E-31 222.4 34.2 320 53-395 29-352 (406)
23 PRK10133 L-fucose transporter; 100.0 9.2E-27 2E-31 223.2 32.5 315 52-392 41-387 (438)
24 TIGR00890 2A0111 Oxalate/Forma 100.0 9E-28 1.9E-32 227.3 25.2 311 57-395 23-339 (377)
25 TIGR00900 2A0121 H+ Antiporter 100.0 2.8E-27 6.1E-32 223.0 28.1 330 42-395 4-345 (365)
26 PRK09874 drug efflux system pr 100.0 2.3E-26 4.9E-31 220.3 34.7 355 42-430 19-394 (408)
27 PRK12307 putative sialic acid 100.0 7.4E-27 1.6E-31 224.9 31.3 343 37-409 14-385 (426)
28 PRK10091 MFS transport protein 100.0 2.5E-26 5.3E-31 217.6 33.0 334 42-407 8-350 (382)
29 PRK11102 bicyclomycin/multidru 100.0 1.4E-26 3E-31 219.4 31.1 330 52-404 6-342 (377)
30 PRK14995 methyl viologen resis 100.0 1.4E-26 3.1E-31 226.1 31.3 330 40-395 5-395 (495)
31 PRK11273 glpT sn-glycerol-3-ph 100.0 9.1E-27 2E-31 225.2 29.6 334 36-395 24-391 (452)
32 PRK12382 putative transporter; 100.0 5.5E-26 1.2E-30 216.2 33.2 351 33-426 11-381 (392)
33 TIGR00710 efflux_Bcr_CflA drug 100.0 5.7E-26 1.2E-30 215.8 33.1 321 51-395 19-343 (385)
34 PRK15403 multidrug efflux syst 100.0 1E-25 2.2E-30 214.9 34.3 320 52-394 31-354 (413)
35 PRK11195 lysophospholipid tran 100.0 1E-25 2.2E-30 213.7 33.1 366 40-438 6-386 (393)
36 PRK03699 putative transporter; 100.0 5.4E-26 1.2E-30 216.2 31.2 320 57-409 27-357 (394)
37 PRK10504 putative transporter; 100.0 5.3E-26 1.2E-30 221.6 30.9 321 52-395 25-397 (471)
38 TIGR00899 2A0120 sugar efflux 100.0 7.3E-26 1.6E-30 214.3 30.9 352 44-428 4-368 (375)
39 TIGR00892 2A0113 monocarboxyla 100.0 2.1E-26 4.5E-31 222.4 27.3 338 30-395 8-377 (455)
40 PRK03893 putative sialic acid 100.0 1.3E-25 2.8E-30 220.5 32.4 355 33-411 12-432 (496)
41 PRK15011 sugar efflux transpor 100.0 1.9E-25 4.1E-30 212.2 31.4 362 35-431 13-388 (393)
42 PRK11646 multidrug resistance 100.0 1.9E-25 4.1E-30 212.3 31.3 333 40-407 13-359 (400)
43 PRK03633 putative MFS family t 100.0 2.3E-25 5E-30 210.9 31.2 342 42-427 11-365 (381)
44 PF07690 MFS_1: Major Facilita 100.0 6.7E-27 1.4E-31 219.3 20.0 330 45-397 4-345 (352)
45 PRK11652 emrD multidrug resist 100.0 5.1E-25 1.1E-29 209.7 33.2 318 50-395 21-342 (394)
46 TIGR00893 2A0114 d-galactonate 100.0 1.1E-25 2.5E-30 214.4 28.7 319 56-395 13-355 (399)
47 PRK10473 multidrug efflux syst 100.0 6E-25 1.3E-29 209.1 33.1 276 37-326 3-282 (392)
48 PRK10077 xylE D-xylose transpo 99.9 3.8E-25 8.3E-30 216.3 32.4 336 36-395 7-408 (479)
49 TIGR00902 2A0127 phenyl propri 99.9 3.6E-25 7.8E-30 209.5 30.5 335 42-409 9-357 (382)
50 PRK10054 putative transporter; 99.9 6.5E-25 1.4E-29 208.3 30.5 361 36-428 6-378 (395)
51 TIGR00711 efflux_EmrB drug res 99.9 1.8E-25 4E-30 218.9 27.4 323 51-395 16-392 (485)
52 TIGR00894 2A0114euk Na(+)-depe 99.9 3E-25 6.6E-30 215.8 28.7 310 66-395 70-404 (465)
53 PRK11043 putative transporter; 99.9 2.1E-24 4.6E-29 206.0 32.4 316 51-395 20-339 (401)
54 TIGR00887 2A0109 phosphate:H+ 99.9 1.1E-24 2.3E-29 213.6 30.9 345 31-395 6-436 (502)
55 TIGR00897 2A0118 polyol permea 99.9 3E-24 6.6E-29 204.6 33.0 355 40-422 16-389 (402)
56 TIGR00898 2A0119 cation transp 99.9 5.9E-25 1.3E-29 216.2 28.0 309 58-395 110-454 (505)
57 TIGR00895 2A0115 benzoate tran 99.9 8.1E-25 1.8E-29 208.7 27.3 330 36-395 12-382 (398)
58 TIGR00712 glpT glycerol-3-phos 99.9 2.5E-24 5.4E-29 207.5 30.8 333 38-395 24-389 (438)
59 COG2223 NarK Nitrate/nitrite t 99.9 4.8E-25 1E-29 197.8 23.7 346 57-429 34-396 (417)
60 PRK15034 nitrate/nitrite trans 99.9 6.3E-24 1.4E-28 199.9 31.1 300 57-382 54-376 (462)
61 TIGR00886 2A0108 nitrite extru 99.9 8.4E-25 1.8E-29 206.3 25.2 327 48-395 12-361 (366)
62 PF05977 MFS_3: Transmembrane 99.9 7.7E-24 1.7E-28 204.2 32.0 356 40-424 13-384 (524)
63 TIGR00896 CynX cyanate transpo 99.9 2.3E-24 4.9E-29 202.3 26.2 305 56-394 19-329 (355)
64 TIGR00881 2A0104 phosphoglycer 99.9 8.7E-25 1.9E-29 207.1 22.2 315 57-395 15-354 (379)
65 TIGR00901 2A0125 AmpG-related 99.9 4.4E-24 9.5E-29 200.5 26.4 322 56-396 7-354 (356)
66 TIGR00883 2A0106 metabolite-pr 99.9 7.3E-24 1.6E-28 201.8 27.7 326 58-409 14-377 (394)
67 TIGR00879 SP MFS transporter, 99.9 8.3E-24 1.8E-28 206.9 28.4 319 57-395 48-427 (481)
68 PRK11128 putative 3-phenylprop 99.9 1.7E-23 3.8E-28 198.1 29.6 329 46-409 13-357 (382)
69 TIGR00885 fucP L-fucose:H+ sym 99.9 2.8E-23 6.2E-28 197.4 30.5 314 50-391 16-361 (410)
70 PRK11902 ampG muropeptide tran 99.9 6.1E-23 1.3E-27 195.8 32.6 369 43-438 5-394 (402)
71 TIGR00889 2A0110 nucleoside tr 99.9 2.8E-23 6.1E-28 198.2 30.0 347 44-422 9-390 (418)
72 PRK11010 ampG muropeptide tran 99.9 2.1E-22 4.5E-27 195.9 33.0 329 43-395 18-360 (491)
73 PRK09528 lacY galactoside perm 99.9 3.5E-23 7.7E-28 198.6 26.5 341 39-409 12-380 (420)
74 cd06174 MFS The Major Facilita 99.9 2E-22 4.4E-27 188.8 28.1 294 47-395 9-309 (352)
75 TIGR00882 2A0105 oligosacchari 99.9 2.7E-22 5.8E-27 191.1 28.1 352 39-422 4-383 (396)
76 COG0738 FucP Fucose permease [ 99.9 2.5E-21 5.4E-26 172.7 30.1 303 51-384 27-357 (422)
77 TIGR00792 gph sugar (Glycoside 99.9 7.3E-22 1.6E-26 190.8 28.0 313 61-395 24-362 (437)
78 PRK10207 dipeptide/tripeptide 99.9 2.2E-21 4.8E-26 187.8 30.6 335 57-404 35-434 (489)
79 PRK06814 acylglycerophosphoeth 99.9 1.1E-21 2.4E-26 211.0 31.3 336 42-395 16-378 (1140)
80 KOG1330 Sugar transporter/spin 99.9 1.3E-23 2.7E-28 190.1 13.1 337 39-394 31-392 (493)
81 KOG0569 Permease of the major 99.9 2.3E-21 5.1E-26 181.7 28.2 322 65-402 47-422 (485)
82 PRK08633 2-acyl-glycerophospho 99.9 3.2E-21 6.9E-26 208.1 33.4 311 57-395 30-366 (1146)
83 KOG0254 Predicted transporter 99.9 1.2E-20 2.5E-25 185.1 28.0 328 54-394 64-438 (513)
84 PF03825 Nuc_H_symport: Nucleo 99.9 4.4E-20 9.6E-25 173.2 29.7 348 39-409 4-366 (400)
85 TIGR00924 yjdL_sub1_fam amino 99.9 1.2E-19 2.5E-24 175.8 33.5 341 50-404 23-436 (475)
86 TIGR00806 rfc RFC reduced fola 99.9 8.8E-20 1.9E-24 168.7 29.1 334 36-394 23-396 (511)
87 COG2807 CynX Cyanate permease 99.9 2.7E-19 5.9E-24 157.4 30.3 319 57-409 32-361 (395)
88 PRK09584 tppB putative tripept 99.9 3.5E-19 7.6E-24 173.5 34.7 321 57-394 41-425 (500)
89 KOG2533 Permease of the major 99.9 1.1E-20 2.4E-25 179.6 22.6 302 62-389 71-405 (495)
90 KOG2532 Permease of the major 99.9 1.4E-20 3E-25 178.6 22.9 238 65-310 66-323 (466)
91 TIGR02718 sider_RhtX_FptX side 99.9 3.7E-19 8.1E-24 169.1 31.7 349 51-426 15-383 (390)
92 KOG2504 Monocarboxylate transp 99.9 1E-19 2.2E-24 174.9 23.6 333 35-395 40-432 (509)
93 TIGR00805 oat sodium-independe 99.8 2.7E-20 5.9E-25 185.2 17.9 266 53-326 49-412 (633)
94 KOG3764 Vesicular amine transp 99.8 1.1E-19 2.4E-24 161.1 18.7 231 65-312 99-337 (464)
95 TIGR01301 GPH_sucrose GPH fami 99.8 2.1E-17 4.5E-22 157.1 33.4 380 48-430 15-467 (477)
96 PRK09669 putative symporter Ya 99.8 7.1E-18 1.5E-22 163.0 28.5 300 61-384 34-352 (444)
97 KOG0253 Synaptic vesicle trans 99.8 6.4E-19 1.4E-23 154.4 18.3 329 35-395 72-478 (528)
98 KOG2615 Permease of the major 99.8 2.4E-18 5.1E-23 151.9 19.2 303 75-404 71-411 (451)
99 KOG0252 Inorganic phosphate tr 99.8 4.2E-20 9.1E-25 166.7 7.8 345 39-402 39-459 (538)
100 PF01306 LacY_symp: LacY proto 99.8 2.5E-17 5.5E-22 151.7 24.9 323 40-392 10-353 (412)
101 PRK09848 glucuronide transport 99.8 9.6E-17 2.1E-21 155.4 28.6 316 55-395 26-370 (448)
102 PF06609 TRI12: Fungal trichot 99.8 1.3E-16 2.8E-21 153.8 28.8 313 57-393 64-447 (599)
103 PF11700 ATG22: Vacuole efflux 99.8 4.5E-16 9.7E-21 149.0 31.7 342 75-433 73-467 (477)
104 PF13347 MFS_2: MFS/sugar tran 99.8 2.3E-17 5E-22 158.6 23.0 302 61-384 26-348 (428)
105 PRK10429 melibiose:sodium symp 99.8 2.3E-16 4.9E-21 153.5 27.9 309 57-383 26-356 (473)
106 PRK15462 dipeptide/tripeptide 99.8 1.2E-15 2.6E-20 145.7 31.1 324 57-394 29-420 (493)
107 PF00083 Sugar_tr: Sugar (and 99.8 1.3E-22 2.8E-27 196.8 -16.9 302 73-395 47-393 (451)
108 KOG0255 Synaptic vesicle trans 99.8 1.2E-16 2.6E-21 157.7 24.4 300 65-395 111-450 (521)
109 TIGR00788 fbt folate/biopterin 99.8 5.5E-16 1.2E-20 149.9 27.7 320 57-395 46-395 (468)
110 PTZ00207 hypothetical protein; 99.8 2E-16 4.3E-21 153.6 23.7 124 38-163 25-160 (591)
111 COG2211 MelB Na+/melibiose sym 99.7 2.4E-15 5.2E-20 140.1 28.0 307 57-384 32-360 (467)
112 TIGR01272 gluP glucose/galacto 99.7 3.9E-15 8.5E-20 136.0 22.1 236 119-384 5-263 (310)
113 COG2270 Permeases of the major 99.7 3.8E-14 8.3E-19 128.0 26.2 301 75-395 61-385 (438)
114 PRK11462 putative transporter; 99.7 1.5E-13 3.3E-18 132.9 30.5 295 62-383 35-350 (460)
115 KOG2563 Permease of the major 99.7 8.3E-14 1.8E-18 126.5 26.4 341 37-398 41-406 (480)
116 KOG4686 Predicted sugar transp 99.6 2.2E-15 4.8E-20 127.8 11.8 304 64-398 71-399 (459)
117 COG3104 PTR2 Dipeptide/tripept 99.6 1.6E-13 3.4E-18 126.9 23.8 330 52-394 37-437 (498)
118 KOG2325 Predicted transporter/ 99.6 2.4E-12 5.2E-17 120.5 25.4 183 36-224 29-234 (488)
119 PF03209 PUCC: PUCC protein; 99.5 3.8E-11 8.1E-16 109.2 29.5 350 62-434 5-398 (403)
120 TIGR00889 2A0110 nucleoside tr 99.5 6.4E-12 1.4E-16 120.2 19.4 164 57-225 228-408 (418)
121 KOG2816 Predicted transporter 99.3 4.4E-09 9.5E-14 100.1 27.0 326 40-395 21-374 (463)
122 TIGR00902 2A0127 phenyl propri 99.3 3.9E-10 8.4E-15 106.9 19.9 159 47-214 215-374 (382)
123 PRK09528 lacY galactoside perm 99.3 1.1E-10 2.4E-15 112.2 14.9 145 65-216 255-400 (420)
124 PF03092 BT1: BT1 family; Int 99.2 4.1E-09 8.8E-14 100.9 24.9 325 57-397 10-364 (433)
125 PRK15011 sugar efflux transpor 99.2 8.1E-10 1.8E-14 105.2 19.1 148 58-216 237-388 (393)
126 PRK05122 major facilitator sup 99.2 1.6E-09 3.5E-14 103.4 19.5 150 57-216 236-386 (399)
127 PRK11128 putative 3-phenylprop 99.2 2.7E-09 5.9E-14 101.2 20.2 149 57-214 225-374 (382)
128 TIGR00899 2A0120 sugar efflux 99.2 2E-09 4.3E-14 101.9 18.8 144 63-215 226-370 (375)
129 PRK09705 cynX putative cyanate 99.2 3E-09 6.6E-14 101.2 19.9 161 57-226 225-388 (393)
130 PF01770 Folate_carrier: Reduc 99.2 6.1E-08 1.3E-12 89.6 27.2 311 57-394 23-383 (412)
131 PRK10489 enterobactin exporter 99.2 3.2E-09 7E-14 102.0 19.5 156 58-224 244-404 (417)
132 PRK03633 putative MFS family t 99.2 5.3E-09 1.1E-13 99.2 20.5 149 57-215 220-368 (381)
133 PRK09874 drug efflux system pr 99.1 3.3E-09 7.2E-14 101.6 19.0 152 57-219 239-398 (408)
134 PRK03545 putative arabinose tr 99.1 6.9E-09 1.5E-13 98.7 20.1 142 63-216 232-377 (390)
135 PRK03699 putative transporter; 99.1 3.3E-09 7.2E-14 101.0 17.9 147 57-212 225-373 (394)
136 TIGR00890 2A0111 Oxalate/Forma 99.1 3.3E-09 7.1E-14 100.3 16.2 143 58-211 226-374 (377)
137 PRK11551 putative 3-hydroxyphe 99.1 8.3E-09 1.8E-13 98.8 18.7 148 58-215 241-392 (406)
138 TIGR00880 2_A_01_02 Multidrug 99.1 9.2E-10 2E-14 88.1 9.5 126 84-220 10-139 (141)
139 PRK10642 proline/glycine betai 99.1 1.4E-08 2.9E-13 99.7 19.3 160 57-224 270-434 (490)
140 PRK10054 putative transporter; 99.0 4.9E-09 1.1E-13 99.8 15.3 130 248-395 8-140 (395)
141 TIGR00924 yjdL_sub1_fam amino 99.0 6E-09 1.3E-13 101.4 15.6 159 244-421 6-179 (475)
142 KOG3626 Organic anion transpor 99.0 7.9E-09 1.7E-13 101.3 16.0 267 42-312 98-460 (735)
143 PRK12382 putative transporter; 99.0 2.7E-08 5.8E-13 94.8 19.1 150 57-216 236-386 (392)
144 COG2814 AraJ Arabinose efflux 99.0 5.4E-08 1.2E-12 89.5 19.6 203 3-217 169-384 (394)
145 KOG3098 Uncharacterized conser 99.0 7.1E-07 1.5E-11 84.0 26.6 312 78-395 56-396 (461)
146 PRK09952 shikimate transporter 99.0 4.2E-08 9.1E-13 94.8 19.2 159 57-221 270-434 (438)
147 PRK11663 regulatory protein Uh 99.0 3.2E-08 6.8E-13 95.6 18.2 111 267-395 42-155 (434)
148 PRK15462 dipeptide/tripeptide 99.0 2.3E-08 5E-13 96.1 16.8 132 249-397 11-148 (493)
149 PF03137 OATP: Organic Anion T 99.0 8.5E-11 1.8E-15 114.6 -0.5 254 52-312 18-373 (539)
150 cd06174 MFS The Major Facilita 99.0 5.1E-08 1.1E-12 91.1 17.9 156 51-214 189-347 (352)
151 TIGR02718 sider_RhtX_FptX side 99.0 7.1E-08 1.5E-12 91.8 19.0 158 48-213 219-385 (390)
152 PRK10091 MFS transport protein 98.9 1.1E-07 2.5E-12 90.1 19.9 142 62-211 225-368 (382)
153 PRK11646 multidrug resistance 98.9 2.1E-08 4.5E-13 95.6 14.8 123 255-395 18-143 (400)
154 TIGR00891 2A0112 putative sial 98.9 1.2E-08 2.6E-13 97.5 13.1 110 268-395 32-144 (405)
155 TIGR00710 efflux_Bcr_CflA drug 98.9 2.3E-08 5E-13 94.9 14.9 103 276-395 32-137 (385)
156 PF07690 MFS_1: Major Facilita 98.9 1.7E-08 3.6E-13 94.6 13.4 111 268-395 16-129 (352)
157 PRK10207 dipeptide/tripeptide 98.9 3.9E-08 8.5E-13 95.8 16.1 158 246-421 12-181 (489)
158 TIGR00792 gph sugar (Glycoside 98.9 4.6E-08 1E-12 94.6 16.2 83 70-153 255-339 (437)
159 COG2223 NarK Nitrate/nitrite t 98.9 5.1E-08 1.1E-12 88.8 15.1 201 4-216 176-398 (417)
160 TIGR00882 2A0105 oligosacchari 98.9 4.8E-08 1E-12 93.2 15.9 139 68-214 250-390 (396)
161 KOG0637 Sucrose transporter an 98.9 1.6E-07 3.4E-12 86.3 18.0 148 49-209 44-218 (498)
162 PRK09556 uhpT sugar phosphate 98.9 3.5E-08 7.5E-13 96.2 15.1 152 58-214 279-444 (467)
163 PRK11010 ampG muropeptide tran 98.9 5.1E-07 1.1E-11 88.4 23.1 147 62-216 248-400 (491)
164 PF11700 ATG22: Vacuole efflux 98.9 2.1E-07 4.5E-12 89.7 19.9 154 64-225 309-473 (477)
165 TIGR00883 2A0106 metabolite-pr 98.9 2.5E-08 5.4E-13 94.9 13.5 130 57-194 239-377 (394)
166 TIGR01299 synapt_SV2 synaptic 98.9 6E-08 1.3E-12 97.9 16.1 109 269-395 188-299 (742)
167 PRK15075 citrate-proton sympor 98.9 9.3E-08 2E-12 92.3 16.9 137 57-198 258-400 (434)
168 TIGR00900 2A0121 H+ Antiporter 98.9 1.1E-07 2.5E-12 89.3 17.2 128 58-191 232-362 (365)
169 PRK10504 putative transporter; 98.9 1.3E-07 2.9E-12 92.4 18.2 121 59-184 283-411 (471)
170 TIGR00712 glpT glycerol-3-phos 98.9 8.5E-08 1.8E-12 92.7 16.5 113 268-395 47-162 (438)
171 KOG3762 Predicted transporter 98.9 1.9E-07 4E-12 87.5 17.5 148 242-407 366-522 (618)
172 PRK11273 glpT sn-glycerol-3-ph 98.9 1.6E-07 3.4E-12 91.3 17.8 113 268-395 49-164 (452)
173 COG2271 UhpC Sugar phosphate p 98.8 1.3E-07 2.8E-12 86.3 15.5 113 268-397 49-163 (448)
174 PRK12307 putative sialic acid 98.8 5.6E-08 1.2E-12 93.7 14.3 104 275-395 44-150 (426)
175 TIGR02332 HpaX 4-hydroxyphenyl 98.8 9.9E-08 2.1E-12 91.4 15.8 110 268-395 28-140 (412)
176 TIGR00886 2A0108 nitrite extru 98.8 1E-07 2.2E-12 89.9 15.7 110 267-394 20-133 (366)
177 PRK15402 multidrug efflux syst 98.8 3.6E-07 7.8E-12 87.5 19.5 126 61-194 239-372 (406)
178 TIGR00897 2A0118 polyol permea 98.8 3.8E-07 8.2E-12 87.2 19.1 149 57-215 242-397 (402)
179 PRK10213 nepI ribonucleoside t 98.8 6.2E-07 1.3E-11 85.4 20.1 139 61-211 241-383 (394)
180 TIGR00892 2A0113 monocarboxyla 98.8 1E-07 2.2E-12 92.5 14.9 150 57-213 261-415 (455)
181 PF03825 Nuc_H_symport: Nucleo 98.8 7E-07 1.5E-11 84.4 19.9 168 49-221 219-397 (400)
182 PRK10473 multidrug efflux syst 98.8 4.9E-07 1.1E-11 86.1 19.2 80 63-142 230-310 (392)
183 PRK10077 xylE D-xylose transpo 98.8 3.6E-07 7.7E-12 89.6 17.8 159 59-224 293-462 (479)
184 PRK09848 glucuronide transport 98.8 1.8E-07 4E-12 90.7 15.6 118 65-183 257-383 (448)
185 PRK11902 ampG muropeptide tran 98.8 6.8E-07 1.5E-11 85.4 19.2 143 62-216 235-387 (402)
186 PRK09584 tppB putative tripept 98.8 3E-07 6.5E-12 90.1 16.8 159 244-421 17-188 (500)
187 TIGR00895 2A0115 benzoate tran 98.8 9.1E-08 2E-12 91.2 12.9 111 267-395 36-149 (398)
188 TIGR00879 SP MFS transporter, 98.8 3.4E-07 7.4E-12 89.5 17.2 159 57-223 304-474 (481)
189 PF05977 MFS_3: Transmembrane 98.8 9.7E-07 2.1E-11 86.1 19.9 145 58-213 239-388 (524)
190 TIGR00893 2A0114 d-galactonate 98.8 6.6E-08 1.4E-12 92.0 11.8 104 275-395 20-126 (399)
191 PRK14995 methyl viologen resis 98.8 2.1E-07 4.6E-12 91.3 15.5 133 267-419 25-167 (495)
192 PRK15403 multidrug efflux syst 98.8 3E-07 6.6E-12 88.0 16.0 129 277-424 44-181 (413)
193 PF06963 FPN1: Ferroportin1 (F 98.8 2.4E-05 5.2E-10 73.9 28.1 145 240-394 252-399 (432)
194 PF01306 LacY_symp: LacY proto 98.7 4.2E-07 9.1E-12 84.6 15.6 146 70-222 257-403 (412)
195 TIGR00896 CynX cyanate transpo 98.7 8.4E-07 1.8E-11 83.3 18.0 131 57-194 217-350 (355)
196 PRK11043 putative transporter; 98.7 2.8E-07 6.1E-12 88.1 14.7 109 268-393 23-136 (401)
197 PRK11195 lysophospholipid tran 98.7 1.5E-06 3.3E-11 82.7 19.5 140 63-209 232-372 (393)
198 TIGR00881 2A0104 phosphoglycer 98.7 2.2E-07 4.9E-12 87.8 13.3 109 269-395 16-127 (379)
199 PRK15034 nitrate/nitrite trans 98.7 3.4E-07 7.3E-12 87.2 14.1 110 271-393 57-169 (462)
200 TIGR00711 efflux_EmrB drug res 98.7 2.4E-07 5.2E-12 90.9 13.3 111 267-395 21-134 (485)
201 PRK09669 putative symporter Ya 98.7 4.3E-07 9.2E-12 88.0 14.8 107 76-183 268-383 (444)
202 PRK03893 putative sialic acid 98.7 3.4E-07 7.3E-12 90.2 14.1 110 268-395 40-152 (496)
203 PLN00028 nitrate transmembrane 98.7 5.2E-07 1.1E-11 88.1 15.2 145 60-216 275-430 (476)
204 PRK11652 emrD multidrug resist 98.7 6.5E-07 1.4E-11 85.4 15.5 106 271-394 31-139 (394)
205 TIGR01272 gluP glucose/galacto 98.7 1.6E-06 3.4E-11 79.5 17.1 125 66-203 172-299 (310)
206 PRK10406 alpha-ketoglutarate t 98.7 2.3E-06 5E-11 82.6 18.9 57 57-113 263-320 (432)
207 PF13347 MFS_2: MFS/sugar tran 98.6 8.8E-07 1.9E-11 85.4 15.0 139 45-185 233-381 (428)
208 PRK10133 L-fucose transporter; 98.6 2E-06 4.4E-11 82.9 17.4 134 65-210 288-424 (438)
209 TIGR00903 2A0129 major facilit 98.6 7.6E-07 1.6E-11 83.7 13.9 131 270-421 13-152 (368)
210 KOG1330 Sugar transporter/spin 98.6 1.8E-08 3.9E-13 92.6 2.6 97 284-397 71-167 (493)
211 PRK11102 bicyclomycin/multidru 98.6 7.2E-06 1.6E-10 77.6 20.5 90 63-153 221-315 (377)
212 PRK10429 melibiose:sodium symp 98.6 1.5E-06 3.3E-11 84.8 15.5 125 58-183 252-388 (473)
213 TIGR00885 fucP L-fucose:H+ sym 98.6 1.5E-06 3.3E-11 83.0 15.0 113 268-395 23-138 (410)
214 TIGR00901 2A0125 AmpG-related 98.6 1.5E-06 3.3E-11 81.6 14.3 102 57-159 229-343 (356)
215 COG2807 CynX Cyanate permease 98.5 9.8E-06 2.1E-10 72.7 17.5 168 40-214 211-380 (395)
216 PF02487 CLN3: CLN3 protein; 98.5 6.8E-05 1.5E-09 69.7 23.2 302 75-404 62-390 (402)
217 TIGR00887 2A0109 phosphate:H+ 98.5 1.7E-06 3.6E-11 85.3 13.7 101 284-395 59-159 (502)
218 TIGR00894 2A0114euk Na(+)-depe 98.5 4.1E-06 8.8E-11 81.8 16.0 153 57-216 281-447 (465)
219 PF06813 Nodulin-like: Nodulin 98.5 4.5E-06 9.8E-11 72.7 14.3 129 39-168 1-141 (250)
220 PRK08633 2-acyl-glycerophospho 98.5 7.1E-06 1.5E-10 89.5 19.4 99 62-161 258-361 (1146)
221 TIGR00926 2A1704 Peptide:H+ sy 98.5 3.4E-05 7.4E-10 77.3 21.9 154 57-216 8-179 (654)
222 COG2270 Permeases of the major 98.5 1.3E-06 2.8E-11 80.0 10.5 164 43-213 256-423 (438)
223 TIGR00880 2_A_01_02 Multidrug 98.5 9.9E-07 2.1E-11 70.2 8.9 90 289-395 6-95 (141)
224 KOG3810 Micronutrient transpor 98.4 2.3E-05 5E-10 69.6 16.5 300 65-394 34-369 (433)
225 COG2211 MelB Na+/melibiose sym 98.4 1.1E-05 2.4E-10 76.1 15.6 115 65-181 263-389 (467)
226 KOG4686 Predicted sugar transp 98.4 7.8E-06 1.7E-10 70.6 13.1 129 63-203 291-426 (459)
227 TIGR00805 oat sodium-independe 98.4 1.6E-06 3.5E-11 87.2 10.3 125 268-395 53-216 (633)
228 TIGR00806 rfc RFC reduced fola 98.4 9.8E-06 2.1E-10 76.4 14.5 104 274-395 51-158 (511)
229 TIGR00898 2A0119 cation transp 98.4 3.9E-06 8.5E-11 82.8 12.6 95 284-395 130-224 (505)
230 KOG3764 Vesicular amine transp 98.4 5.4E-06 1.2E-10 75.1 11.7 139 57-198 290-435 (464)
231 KOG2615 Permease of the major 98.4 8.7E-06 1.9E-10 73.4 12.9 105 284-406 71-181 (451)
232 PF06609 TRI12: Fungal trichot 98.4 7E-06 1.5E-10 80.3 13.2 93 284-394 81-173 (599)
233 KOG0569 Permease of the major 98.3 6.3E-06 1.4E-10 78.5 12.4 107 284-404 63-171 (485)
234 PRK11462 putative transporter; 98.3 2.9E-05 6.4E-10 75.4 17.3 111 73-184 264-383 (460)
235 COG3104 PTR2 Dipeptide/tripept 98.3 9.4E-06 2E-10 76.1 13.0 174 243-434 16-206 (498)
236 PRK06814 acylglycerophosphoeth 98.3 3.4E-05 7.3E-10 84.1 18.5 104 59-163 247-375 (1140)
237 PF12832 MFS_1_like: MFS_1 lik 98.3 1.8E-06 3.9E-11 60.2 5.6 68 45-112 8-75 (77)
238 TIGR00769 AAA ADP/ATP carrier 98.3 0.0027 5.7E-08 61.1 28.8 248 59-312 25-334 (472)
239 TIGR00788 fbt folate/biopterin 98.3 3E-05 6.6E-10 75.4 15.3 96 65-161 281-387 (468)
240 COG0477 ProP Permeases of the 98.2 7.7E-05 1.7E-09 68.0 16.3 103 53-156 18-125 (338)
241 KOG2504 Monocarboxylate transp 98.2 3.4E-05 7.3E-10 75.1 14.2 150 57-213 318-470 (509)
242 TIGR01301 GPH_sucrose GPH fami 98.2 3E-05 6.5E-10 74.6 13.3 126 267-394 23-159 (477)
243 PTZ00207 hypothetical protein; 98.1 6.3E-05 1.4E-09 74.1 13.3 115 268-395 47-163 (591)
244 KOG0252 Inorganic phosphate tr 98.0 7.7E-05 1.7E-09 69.1 12.2 99 284-392 87-185 (538)
245 KOG0254 Predicted transporter 98.0 5.6E-05 1.2E-09 74.7 11.7 104 284-404 92-197 (513)
246 PF03209 PUCC: PUCC protein; 98.0 0.0012 2.6E-08 60.9 18.9 170 41-216 212-395 (403)
247 KOG2532 Permease of the major 97.9 0.0001 2.2E-09 70.9 11.7 96 284-394 76-171 (466)
248 PF06779 DUF1228: Protein of u 97.9 2E-05 4.3E-10 55.4 4.9 76 52-127 7-83 (85)
249 COG0738 FucP Fucose permease [ 97.9 0.00042 9.2E-09 63.4 13.9 129 57-195 256-387 (422)
250 PF06813 Nodulin-like: Nodulin 97.9 0.00042 9.2E-09 60.5 13.2 126 258-397 13-141 (250)
251 KOG0255 Synaptic vesicle trans 97.9 0.00014 3E-09 72.2 11.6 91 284-391 121-211 (521)
252 KOG3762 Predicted transporter 97.9 6.3E-05 1.4E-09 71.0 8.4 159 46-211 380-539 (618)
253 KOG3574 Acetyl-CoA transporter 97.7 0.029 6.2E-07 51.3 21.4 96 53-151 47-160 (510)
254 PF05978 UNC-93: Ion channel r 97.6 0.002 4.4E-08 51.8 12.8 78 79-157 44-121 (156)
255 PF05631 DUF791: Protein of un 97.6 0.0088 1.9E-07 54.5 17.5 94 279-390 64-165 (354)
256 KOG2325 Predicted transporter/ 97.6 0.0007 1.5E-08 64.4 10.6 132 245-391 31-169 (488)
257 PF00083 Sugar_tr: Sugar (and 97.5 2.4E-06 5.1E-11 83.1 -6.5 98 284-395 49-146 (451)
258 PF00854 PTR2: POT family; In 97.2 0.014 3.1E-07 55.1 15.7 106 103-216 2-120 (372)
259 KOG2533 Permease of the major 97.2 0.0069 1.5E-07 58.8 13.5 126 284-426 84-219 (495)
260 KOG1479 Nucleoside transporter 97.1 0.087 1.9E-06 49.1 18.7 40 352-391 344-383 (406)
261 KOG0253 Synaptic vesicle trans 97.1 0.0015 3.3E-08 59.1 7.0 124 85-225 394-525 (528)
262 KOG2563 Permease of the major 97.1 0.0088 1.9E-07 55.9 12.1 148 246-404 40-195 (480)
263 KOG3097 Predicted membrane pro 96.8 0.27 5.9E-06 44.2 18.1 90 91-181 77-180 (390)
264 PF03219 TLC: TLC ATP/ADP tran 96.8 0.58 1.3E-05 45.6 23.1 79 234-313 267-351 (491)
265 TIGR00939 2a57 Equilibrative N 96.7 0.66 1.4E-05 44.7 23.6 51 352-402 373-425 (437)
266 KOG1237 H+/oligopeptide sympor 96.3 0.49 1.1E-05 47.1 18.5 154 57-216 58-242 (571)
267 TIGR00926 2A1704 Peptide:H+ sy 96.3 0.046 9.9E-07 55.3 11.5 148 274-430 13-178 (654)
268 PF12832 MFS_1_like: MFS_1 lik 96.2 0.028 6.1E-07 39.1 7.0 46 267-313 19-67 (77)
269 KOG2816 Predicted transporter 95.4 0.17 3.7E-06 48.9 11.0 86 290-395 71-156 (463)
270 KOG3880 Predicted small molecu 95.3 0.4 8.7E-06 42.8 11.8 70 76-145 66-136 (409)
271 PF05978 UNC-93: Ion channel r 95.1 0.24 5.1E-06 39.9 9.3 88 288-393 44-131 (156)
272 PF03092 BT1: BT1 family; Int 94.8 0.24 5.1E-06 47.8 10.0 107 274-391 15-128 (433)
273 KOG3574 Acetyl-CoA transporter 93.9 1.3 2.8E-05 41.0 11.8 136 244-388 27-170 (510)
274 KOG0637 Sucrose transporter an 93.2 0.15 3.3E-06 48.0 5.1 133 259-395 44-187 (498)
275 PF07672 MFS_Mycoplasma: Mycop 93.1 1.5 3.3E-05 38.2 10.6 22 238-259 85-106 (267)
276 PF03137 OATP: Organic Anion T 92.6 0.027 5.8E-07 55.7 -0.8 118 275-394 29-184 (539)
277 COG3202 ATP/ADP translocase [E 91.2 15 0.00033 35.5 23.7 79 36-114 22-104 (509)
278 TIGR00769 AAA ADP/ATP carrier 90.4 18 0.0004 35.2 17.7 48 356-403 133-183 (472)
279 PF01770 Folate_carrier: Reduc 90.2 15 0.00033 34.8 14.7 127 271-415 26-163 (412)
280 PRK03612 spermidine synthase; 90.1 17 0.00037 36.1 15.7 32 65-96 43-74 (521)
281 COG0477 ProP Permeases of the 89.5 1.6 3.4E-05 39.1 7.9 96 284-394 42-138 (338)
282 PF00854 PTR2: POT family; In 88.6 5.4 0.00012 37.6 10.9 81 352-432 34-121 (372)
283 PF13000 Acatn: Acetyl-coenzym 88.4 26 0.00057 34.1 21.3 43 355-397 409-451 (544)
284 PF02487 CLN3: CLN3 protein; 84.3 39 0.00084 32.1 14.3 86 280-383 58-143 (402)
285 KOG3098 Uncharacterized conser 81.2 55 0.0012 31.8 16.6 95 66-161 272-391 (461)
286 PRK03612 spermidine synthase; 80.8 41 0.00089 33.4 13.2 25 356-380 115-139 (521)
287 PF06779 DUF1228: Protein of u 80.1 7.4 0.00016 27.6 5.6 59 268-329 12-73 (85)
288 KOG3626 Organic anion transpor 79.1 3.1 6.7E-05 42.3 4.8 127 275-403 123-291 (735)
289 KOG4332 Predicted sugar transp 76.1 9.2 0.0002 33.8 6.2 79 284-380 75-154 (454)
290 PF01733 Nucleoside_tran: Nucl 75.8 1.1 2.3E-05 41.1 0.6 43 352-394 249-291 (309)
291 PF06963 FPN1: Ferroportin1 (F 75.1 49 0.0011 31.9 11.4 107 65-172 286-406 (432)
292 PF07672 MFS_Mycoplasma: Mycop 72.8 68 0.0015 28.4 10.9 70 76-145 144-225 (267)
293 COG4769 Predicted membrane pro 69.6 20 0.00042 28.8 6.0 48 85-137 86-133 (181)
294 COG5336 Uncharacterized protei 66.9 8 0.00017 28.4 3.2 21 79-99 49-69 (116)
295 TIGR02123 TRAP_fused TRAP tran 60.7 1.3E+02 0.0029 30.5 11.6 32 42-73 116-147 (613)
296 PF13386 DsbD_2: Cytochrome C 59.5 1.1E+02 0.0023 25.8 14.6 27 284-310 153-179 (199)
297 COG3202 ATP/ADP translocase [E 57.1 2E+02 0.0043 28.2 15.1 104 293-398 74-195 (509)
298 TIGR00939 2a57 Equilibrative N 55.2 2.1E+02 0.0045 27.8 12.4 32 352-384 107-138 (437)
299 PF03219 TLC: TLC ATP/ADP tran 53.0 2.4E+02 0.0052 27.9 17.2 27 371-397 164-190 (491)
300 PF02990 EMP70: Endomembrane p 52.2 1.1E+02 0.0023 30.5 9.4 26 287-312 303-328 (521)
301 PF10717 ODV-E18: Occlusion-de 45.6 36 0.00079 23.7 3.4 25 5-29 30-54 (85)
302 PF06800 Sugar_transport: Suga 43.4 1.7E+02 0.0037 26.1 8.2 34 393-426 82-115 (269)
303 KOG2601 Iron transporter [Inor 39.7 96 0.0021 29.2 6.2 40 355-394 390-429 (503)
304 PF07332 DUF1469: Protein of u 37.1 1.8E+02 0.004 22.0 7.5 7 200-206 74-80 (121)
305 TIGR03717 R_switched_YjbE inte 36.1 2.5E+02 0.0054 23.2 8.1 22 6-27 63-84 (176)
306 PRK11469 hypothetical protein; 34.7 2.5E+02 0.0054 23.5 7.6 108 6-116 71-179 (188)
307 PF11947 DUF3464: Protein of u 33.5 84 0.0018 25.2 4.3 29 370-398 113-141 (153)
308 PF04346 EutH: Ethanolamine ut 33.0 3.1E+02 0.0068 25.5 8.3 58 84-141 58-119 (354)
309 KOG4830 Predicted sugar transp 32.4 3.7E+02 0.008 24.1 9.1 43 63-105 43-94 (412)
310 PF11872 DUF3392: Protein of u 31.7 1.2E+02 0.0027 22.5 4.6 37 242-278 43-79 (106)
311 COG2119 Predicted membrane pro 31.2 3.1E+02 0.0067 22.8 9.5 24 91-114 153-176 (190)
312 TIGR00688 rarD rarD protein. T 31.0 1.8E+02 0.0039 25.5 6.7 45 70-116 95-139 (256)
313 COG1593 DctQ TRAP-type C4-dica 30.8 1.6E+02 0.0034 27.7 6.2 47 57-103 294-342 (379)
314 PF08173 YbgT_YccB: Membrane b 30.8 68 0.0015 17.3 2.3 16 3-18 1-16 (28)
315 KOG3810 Micronutrient transpor 30.3 4.7E+02 0.01 24.7 10.5 78 75-153 274-354 (433)
316 PF06123 CreD: Inner membrane 30.1 5.2E+02 0.011 25.0 10.8 57 370-430 364-421 (430)
317 KOG1237 H+/oligopeptide sympor 29.8 5.5E+02 0.012 26.0 10.4 30 353-382 154-183 (571)
318 COG4890 Predicted outer membra 29.6 72 0.0015 17.9 2.3 16 3-18 1-16 (37)
319 PRK11588 hypothetical protein; 28.3 6E+02 0.013 25.2 12.5 37 92-128 136-175 (506)
320 PRK11715 inner membrane protei 28.3 5.6E+02 0.012 24.9 10.6 22 370-391 370-391 (436)
321 PRK14749 hypothetical protein; 27.6 87 0.0019 17.0 2.3 17 3-19 1-17 (30)
322 KOG1479 Nucleoside transporter 27.5 5.6E+02 0.012 24.6 13.2 35 352-386 118-152 (406)
323 PF09527 ATPase_gene1: Putativ 27.1 1.2E+02 0.0025 19.2 3.5 30 85-114 13-43 (55)
324 COG2962 RarD Predicted permeas 26.6 4.8E+02 0.01 23.5 11.2 76 242-326 64-140 (293)
325 TIGR02106 cyd_oper_ybgT cyd op 26.5 88 0.0019 17.1 2.3 17 3-19 1-17 (30)
326 PF11299 DUF3100: Protein of u 26.2 1.3E+02 0.0027 26.0 4.4 61 92-152 127-199 (241)
327 COG5336 Uncharacterized protei 25.5 2.9E+02 0.0063 20.6 6.2 38 287-326 48-86 (116)
328 PF09930 DUF2162: Predicted tr 24.3 3.8E+02 0.0083 23.2 7.0 50 63-115 122-171 (224)
329 PF13000 Acatn: Acetyl-coenzym 23.8 7.3E+02 0.016 24.7 10.5 27 302-329 61-87 (544)
330 PF06808 DctM: DctM-like trans 23.8 3.9E+02 0.0084 25.7 7.9 32 149-180 121-152 (416)
331 PF03596 Cad: Cadmium resistan 23.5 2.4E+02 0.0051 23.7 5.5 14 91-104 154-167 (191)
332 COG2836 Uncharacterized conser 20.8 5.6E+02 0.012 22.2 10.6 25 284-308 167-191 (232)
No 1
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-41 Score=281.01 Aligned_cols=425 Identities=87% Similarity=1.413 Sum_probs=376.1
Q ss_pred CchHHHHHHHHHHHHHHHHhhcccCccCCCCCcccchhhHHHHHHHHHHHhhhhhcchhHhHhHhhcCCCCcchhHHHHH
Q 013253 1 MEMFFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIA 80 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~ 80 (447)
||.|||++++++.+.|.-+|+.+.++++...++.+.+++..++.++.+.+.++++++|+++.++++++....|+|.++..
T Consensus 1 MevfyylvFggl~a~vagLELSk~nkdRintsssFnsFknnyllVyslmmAgDWLQgPYvYyLYstYgFgkG~IgqLfia 80 (454)
T KOG4332|consen 1 MEVFYYLVFGGLAAVVAGLELSKCNKDRINTSSSFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGDIGQLFIA 80 (454)
T ss_pred CeeeehHHHHHHHHHHHHhhhhhcccccccCchhHHHHhhhHHHHHHHHHhhhhhcCceeeeeehhcCccCCccceeeec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh-cccchh
Q 013253 81 GFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFE 159 (447)
Q Consensus 81 ~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~ 159 (447)
++...++++.+.|.++|+-|||+.-+.-++.+.++++.-.+++|..++++|++-|+..+..+.+-.+|++.|+ ++|+..
T Consensus 81 GfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~Fe 160 (454)
T KOG4332|consen 81 GFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFE 160 (454)
T ss_pred ccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCCh
Confidence 9999999999999999999999998888888899999999999999999999999999999999999999999 689999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHH
Q 013253 160 QQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGA 239 (447)
Q Consensus 160 ~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (447)
..|....++-....|+.+-.++++..+..+.+..+.|...+|...+++..+...+.+..|.|+.+++.+.++..++.+..
T Consensus 161 qqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~ENygdps~~kdlltqf~ga 240 (454)
T KOG4332|consen 161 QQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSENYGDPSENKDLLTQFKGA 240 (454)
T ss_pred HhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhccCChhhhHHHHHHhhHh
Confidence 99999999989999999999999999999999999999999999998888888888888999999888888888888888
Q ss_pred HHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHH
Q 013253 240 AVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIV 319 (447)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~ 319 (447)
.+.+.+++++.++..+..++...+|.++..|.|....+..+.+.|.+++.+.++.++|+-+..++..|-..|-+..+.+.
T Consensus 241 a~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaLspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqiv 320 (454)
T KOG4332|consen 241 ARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIV 320 (454)
T ss_pred HHHHhcchHHHHHHHHHHHHhhhhheeeeeecccCCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHH
Confidence 88899999999999999999999999999999999877778888999999999999999999998888766766677777
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhhhhHH
Q 013253 320 FVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIF 399 (447)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~ 399 (447)
+.+....+.++..... ..|+ ..+ ...-+++++++..+.|..+|...-+-.+..|++.|++.+.+++...+++
T Consensus 321 f~vs~a~l~Lpilt~~-vsP~---kes----~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLnif 392 (454)
T KOG4332|consen 321 FLVSIAALLLPILTSS-VSPS---KES----PSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIF 392 (454)
T ss_pred HHHHHHHHHHHHHHhc-cCCC---cCC----chHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhHh
Confidence 7777777777665544 2222 111 1244788999999999999999999999999999999999999999998
Q ss_pred HHHHHHh--hcccch--HHHHHHHHHHHHHHHHHhhhh
Q 013253 400 VCVVLYN--VDAFPI--TVMFGMCSIFLLVASVLQRRL 433 (447)
Q Consensus 400 ~~~~l~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 433 (447)
+...++. .+..+. ..++.+|.....++.+..++.
T Consensus 393 vClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~~~~L 430 (454)
T KOG4332|consen 393 VCLVLYNLHVDAFPTTTRNMFGICSAFLFVASILQRRL 430 (454)
T ss_pred hhhhheecccccCccccchhhhhhHHHHHHHHHHHHHH
Confidence 8877754 233333 478888888877776665554
No 2
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=100.00 E-value=9.2e-36 Score=263.35 Aligned_cols=335 Identities=63% Similarity=1.067 Sum_probs=296.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccCccCCCCCcccchhhHHHHHHHHHHHhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHH
Q 013253 4 FFYLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFG 83 (447)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~ 83 (447)
|||+.++++.++|..+|..++++++..+++.++++|+.++.++.+...+|++++|++..+++++|.++.|++.++..++.
T Consensus 1 ~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~f~~Fqr~yl~vY~La~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~ 80 (354)
T PF05631_consen 1 FYYLVFGVLAAVCAALELSKRTKDRASTNPAFRRFQRKYLLVYLLAMAADWLQGPYLYALYESYGFSEHQIAILFVAGFA 80 (354)
T ss_pred CchhHHHHHHHHHHHHheecccccccccChHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHH
Confidence 68999999999999999999988888888899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccchhhhccCchhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHH
Q 013253 84 SSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWL 163 (447)
Q Consensus 84 ~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~ 163 (447)
.+.+.+++.|.++||+|||+..+..+++.++++++-..++++.++++|++.|++....+.+-.+|++.|+++|+....+.
T Consensus 81 Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L 160 (354)
T PF05631_consen 81 SSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWL 160 (354)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 99999999999999999999999999999999988889999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHH
Q 013253 164 SITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAI 243 (447)
Q Consensus 164 ~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (447)
...+......++.+-.+.++.++.++.+..+.+...||.....+..++.+++...|+|+.++.++.++..++.++..+.+
T Consensus 161 ~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~~~~a~~~i 240 (354)
T PF05631_consen 161 SDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGSFREAWRAI 240 (354)
T ss_pred HHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHHHHHHHHHHH
Confidence 77777655577888888889999988887777778999999998888888888889998877665556666777778889
Q ss_pred hcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHH
Q 013253 244 ASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVS 323 (447)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~ 323 (447)
++||+.+.+.....++.+.+|.++..|.|.+..++.+.+.|.+++.++++.++|+.+..++..|- .|.+..+.....+.
T Consensus 241 ~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~-~~~e~~l~~v~~~a 319 (354)
T PF05631_consen 241 LSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRLLSKS-LRPESLLRYVFAVA 319 (354)
T ss_pred HcCchhHHHHHHHHHHHHHHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 99999999999999999999999999999998666677779999999999999999997766654 45656677777777
Q ss_pred HHHHHHHHHhhhccCC
Q 013253 324 SVSLLLPIVTSFLVAP 339 (447)
Q Consensus 324 ~~~~~~~~~~~~~~~~ 339 (447)
++++.++.+......|
T Consensus 320 a~~l~~pv~~~~~~~p 335 (354)
T PF05631_consen 320 AVSLAIPVVTHIFGQP 335 (354)
T ss_pred HHHHHHHHHHhhccCC
Confidence 7777777766544333
No 3
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-30 Score=234.29 Aligned_cols=344 Identities=17% Similarity=0.232 Sum_probs=242.0
Q ss_pred hhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHH
Q 013253 51 AGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMI 129 (447)
Q Consensus 51 ~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~ 129 (447)
....+..+.+|++.+|+|+|..+.|++.+.+.....+++|+...+.||+.||++++..+.++.++. ++++++||+.+++
T Consensus 27 ttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~ 106 (394)
T COG2814 27 TTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLL 106 (394)
T ss_pred hHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 345555899999999999999999999999888888999999999999999999999999999986 7899999999999
Q ss_pred HHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHH
Q 013253 130 GRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAAC 206 (447)
Q Consensus 130 ~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~ 206 (447)
+|++.|+..|..++...+ +..+. ++|++..+. ...|..++.++|.+++.++.+. |+||..|++.+.
T Consensus 107 aR~~~g~a~G~f~~i~~~-~a~~lvpp~~~~~Aiai--------v~~G~tlA~v~GvPLGt~ig~~--~GWR~~F~~ia~ 175 (394)
T COG2814 107 ARALAGLAHGVFWSIAAA-LAARLVPPGKRGRALAL--------VFTGLTLATVLGVPLGTFLGQL--FGWRATFLAIAV 175 (394)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHcCccchhhHHHH--------HHHHHHHHHHHhccHHHHHHHH--hhHHHHHHHHHH
Confidence 999999999999998855 76666 444444432 2334555555555666665543 677899999999
Q ss_pred HHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---
Q 013253 207 FLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH--- 283 (447)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 283 (447)
+.++..+..+...|+++.+++++.+. ++..+.+|+|+.+.......+...+.+. ..+|...++++..+.+.
T Consensus 176 l~ll~~~~~~~~lP~~~~~~~~~~~~-----~~~~~~l~~p~v~~~l~~t~l~~~g~F~-~ftYi~P~L~~v~g~s~~~v 249 (394)
T COG2814 176 LALLALLLLWKLLPPSEISGSLPGPL-----RTLLRLLRRPGVLLGLLATFLFMTGHFA-LYTYIRPFLESVAGFSVSAV 249 (394)
T ss_pred HHHHHHHHHHHhCCCccCCCCCCcch-----hHHHHHhcCchHHHHHHHHHHHHcchhh-hHHhHHHHHHHccCCCHhHH
Confidence 99988888887888111111111111 1223678889999888888887777777 46666667777766665
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHh
Q 013253 284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA 363 (447)
Q Consensus 284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 363 (447)
+.....++++.++|+.++|++.|| +.|+. +.....+..+....+.+.... .+......++.++
T Consensus 250 s~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~--l~~~~~l~a~~~l~l~~~~~~--------------~~~~~~~~~~wg~ 312 (394)
T COG2814 250 SLVLLAFGIAGFIGNLLGGRLADR-GPRRA--LIAALLLLALALLALTFTGAS--------------PALALALLFLWGF 312 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccc-cchhH--HHHHHHHHHHHHHHHHHhcch--------------HHHHHHHHHHHHH
Confidence 777888999999999999999999 66652 444444444444443333222 1344555556677
Q ss_pred hhccchhHHHHHHhhcCChhhhccccchhhhhh------hHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhh
Q 013253 364 CVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPL------NIFVCVVLYNVDAFPITVMFGMCSIFLLVASVLQR 431 (447)
Q Consensus 364 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
.........+....+..| +.+..+.+++.... |..+|+.+.+. +++......+++..+.+..+..
T Consensus 313 a~~~~~~~~~~~~a~~~p-~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~--~g~~~~~~~~a~l~~~a~~~~~ 383 (394)
T COG2814 313 AFSPALQGLQTRLARLAP-DAADLAGSLNVAAFNLGIALGAALGGLVLDA--LGYAATGWVGAALLLLALLLAL 383 (394)
T ss_pred HhhhhhhHHHHHhcccCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHHHH
Confidence 766555666666666433 44666666655543 33556666666 5555555555555555444443
No 4
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.97 E-value=3.7e-29 Score=240.57 Aligned_cols=337 Identities=14% Similarity=0.129 Sum_probs=202.3
Q ss_pred hHHHHHHHHHHHhhhhhc----chhHhHhHhhcC---CCCcc---hhHHHHHHHHhhhhhccccchhhhccCchhHHHHH
Q 013253 39 KNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYG---FGKGE---IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTY 108 (447)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~----~~~l~~i~~~~g---~s~~~---~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~ 108 (447)
+++.+....+..+.+.+| ....|.+.+|++ .+..+ .+.+++..++...++++++|+++||+||||++..+
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~ 99 (432)
T PRK10406 20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLIS 99 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 444455555556666666 445566778874 44443 34566677776778888999999999999999999
Q ss_pred HHHHHHHH-HHhcCchhH--------HHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHH
Q 013253 109 CLTYILSC-ITKHSPQYK--------ILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVA 179 (447)
Q Consensus 109 ~~~~~i~~-l~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~ 179 (447)
..+++++. ++++++++. .+++.|+++|++.|...+...+ +++|+.+++++.... .....+...|..++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~-~i~e~~p~~~rg~~~-~~~~~~~~~G~~~~~ 177 (432)
T PRK10406 100 VCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSAT-YMSEVAVEGRKGFYA-SFQYVTLIGGQLLAL 177 (432)
T ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHH-HHHHhCCCCcccHHH-HHHHHHHHHHHHHHH
Confidence 99999976 678888764 6899999999999999998866 889883333322211 122223333443444
Q ss_pred HHhhhhhhhhhc--ccccCccchhhhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHH
Q 013253 180 ILSGLFGNLLVD--SFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQS 257 (447)
Q Consensus 180 ~~~~~l~~~l~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (447)
.+...+...+.+ ...|+||.+|.+.++..++..++ ....||+++.+++++ +...+.++++|+++.+.......
T Consensus 178 ~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~-~~~~~e~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~ 252 (432)
T PRK10406 178 LVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWL-RRQLDETSQQETRAL----KEAGSLKGLWRNRRAFIMVLGFT 252 (432)
T ss_pred HHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHH-HhcCCCCchHHHhhh----cccccHHHHHhhHHHHHHHHHHH
Confidence 333333322211 12578999998877766554332 223444332111110 11223556778888776655544
Q ss_pred hh-hhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHh
Q 013253 258 LF-EGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVT 333 (447)
Q Consensus 258 ~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~ 333 (447)
+. ....+. ...|.|.|+++..+.+. +...+...+...++..+.|+++||++||+. +.....+..+........
T Consensus 253 ~~~~~~~~~-~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~--~~~~~~~~~~~~~~~~~~ 329 (432)
T PRK10406 253 AAGSLCFYT-FTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTS--MLCFGSLAALFTVPILSA 329 (432)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH--HHHHHHHHHHHHHHHHHH
Confidence 43 333343 57799999876666654 455556667778888899999999998873 333222222221111111
Q ss_pred hhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhhh
Q 013253 334 SFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPL 396 (447)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~ 396 (447)
.... ++. +..+....+..+..+...+..+.+.+|.+|++.|+++.|+.+...
T Consensus 330 ~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g 381 (432)
T PRK10406 330 LQNV-------SSP----YAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVA 381 (432)
T ss_pred HHcC-------CcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHH
Confidence 1110 000 111222222223333334567788999999999999999876543
No 5
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.97 E-value=1.5e-29 Score=245.74 Aligned_cols=336 Identities=15% Similarity=0.038 Sum_probs=211.9
Q ss_pred hhhHHHHHHHHHHHhhhhhc----chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHH
Q 013253 37 SFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTY 112 (447)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~----~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~ 112 (447)
|..+..+..+++......++ ++..|.+.+|+|+|+.+.|++.+..+....+.+++.|+++||+|||+++..+.++.
T Consensus 25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~ 104 (467)
T PRK09556 25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILS 104 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHH
Confidence 33444555555555544444 67788999999999999999988888888888999999999999999998888777
Q ss_pred HHHH-HH-----hcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 013253 113 ILSC-IT-----KHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSG 183 (447)
Q Consensus 113 ~i~~-l~-----~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~ 183 (447)
++.. .. +.++|++.+++.|+++|++.+...|.... +++|+ ++|++..+.... +..+|..+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~-~i~~~~~~~~rg~a~gi~~~--------~~~lG~~l~~ 175 (467)
T PRK09556 105 AICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYS-TITRWTPRRKRGRFLGFWNI--------SHNLGGAGAG 175 (467)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHH-HHHHHcCccceeeeEEeeec--------ccchhhhHHH
Confidence 6643 22 34789999999999999999998888766 88887 456666554333 2334444444
Q ss_pred hhhhhhhccc-ccCccchhhhHHHHHHHHHHHHHHhccccCCC---CC------Cc---hhH---HHH--HHH-HHHHHh
Q 013253 184 LFGNLLVDSF-SLGPVAPFDAAACFLAIGMVIILSSWTENYGD---PS------ES---KDL---LTQ--FRG-AAVAIA 244 (447)
Q Consensus 184 ~l~~~l~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~------~~---~~~---~~~--~~~-~~~~~~ 244 (447)
.+..++.+.. +.+|+..|...+++.++..+......++++++ .+ +. ++. .++ ..+ ..+..+
T Consensus 176 ~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 255 (467)
T PRK09556 176 GVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVL 255 (467)
T ss_pred HHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHH
Confidence 5444433321 22467777776665554433333222222110 00 00 000 000 011 122367
Q ss_pred cchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHH
Q 013253 245 SDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFV 321 (447)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~ 321 (447)
|+|.+|...+...+.....+. ...|.|.|+++.+|.+. +.......++.+++.++.|+++||++||+. ......
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~-~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~--~~~~~~ 332 (467)
T PRK09556 256 KNPVIWLLCFANIFLYIVRIG-IDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRA--LVACIA 332 (467)
T ss_pred cChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch--HHHHHH
Confidence 888888887776666665554 58899999987777765 555566778899999999999999998873 222222
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhhhh
Q 013253 322 VSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLN 397 (447)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 397 (447)
........... ... ++ .+...+..++.|+..............|.+|++.|+++.|+.+...+
T Consensus 333 ~~~~~~~~~~~-~~~--------~~----~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~ 395 (467)
T PRK09556 333 LALIIFTLGVY-QHA--------TS----EYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAY 395 (467)
T ss_pred HHHHHHHHHHH-Hhc--------Cc----HHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Confidence 22222111111 111 00 11233444445543322223334677799999999999999876533
No 6
>PRK03545 putative arabinose transporter; Provisional
Probab=99.97 E-value=1.9e-28 Score=232.80 Aligned_cols=337 Identities=14% Similarity=0.126 Sum_probs=223.0
Q ss_pred hcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHH
Q 013253 55 LQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRIL 133 (447)
Q Consensus 55 ~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l 133 (447)
...|++|.+.+|+|.|+.++|+..+.......+++++.|+++||+||||++..+..+.+++. .+++++|++.+++.|++
T Consensus 27 ~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ 106 (390)
T PRK03545 27 VPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIG 106 (390)
T ss_pred HHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34677899999999999999999888887777888899999999999999999999998886 67889999999999999
Q ss_pred HHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHH
Q 013253 134 GGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI 210 (447)
Q Consensus 134 ~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~ 210 (447)
+|++.+...+...+ ++.|. ++|++..+. ...+..+|..++|.+++.+.+.. +||..|+..+++.++
T Consensus 107 ~G~~~~~~~~~~~~-~i~~~~~~~~r~~~~g~--------~~~~~~~g~~ig~~l~~~l~~~~--gw~~~f~~~~~~~~l 175 (390)
T PRK03545 107 IAFAHAIFWSITAS-LAIRVAPAGKKAQALSL--------LATGTALAMVLGLPLGRVIGQYL--GWRTTFLAIGGGALI 175 (390)
T ss_pred HHHHHHHHHHHHHH-HHHHhCChhhhhhHHHH--------HHHHHHHHHHHHhhHHHHHHHHh--cHHHHHHHHHHHHHH
Confidence 99999988887756 77766 344443332 23345566677777777666544 567778887776665
Q ss_pred HHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHH
Q 013253 211 GMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIF 287 (447)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 287 (447)
.........||++++++ +. .++.++.+|+|+++.......+.....+. ...+.+.+.++..+.+. +...
T Consensus 176 ~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~g~s~~~~~~~~ 247 (390)
T PRK03545 176 TLLLLIKLLPLLPSEHS---GS----LKSLPLLFRRPALVSLYLLTVVVVTAHFT-AYSYIEPFVQQVAGLSENFATLLL 247 (390)
T ss_pred HHHHHHHhCCCCCCCCc---ch----HHHHHHHHhCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccHHHHHH
Confidence 55444434454332211 11 12344677888776554444433333333 34566666665555544 6666
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhcc
Q 013253 288 ATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGI 367 (447)
Q Consensus 288 ~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 367 (447)
....++.++++++.+++.||+++|+ +..+..+.............. .+...+...+.|++.+.
T Consensus 248 ~~~~~~~~~g~~~~g~l~dr~~~~~---~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~~~~l~g~~~~~ 310 (390)
T PRK03545 248 LLFGGAGIIGSVLFSRLGNRHPSGF---LLIAIALLLVCLLLLLPAANS--------------EWHLSVLSIFWGIAIMC 310 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhccchhH---HHHHHHHHHHHHHHHHHHhch--------------HHHHHHHHHHHHHHHhc
Confidence 7778899999999999999998765 333333333332222111111 12445567777777776
Q ss_pred chhHHHHHHhhcCChhhhccccchhhhh------hhHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHh
Q 013253 368 FWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMFGMCSIFLLVASVLQ 430 (447)
Q Consensus 368 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
..+...+.+.|..|+ .|++++|+.+.. .+..+++.+.+.. ++...+...+...+++....
T Consensus 311 ~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~--g~~~~~~~~~~~~~~~~~~~ 376 (390)
T PRK03545 311 IGLAMQVKVLKLAPD-ATDVAMALFSGIFNIGIGAGALLGNQVSLHL--GLSSIGYVGAALALAALVWS 376 (390)
T ss_pred chHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ChhHHHHHHHHHHHHHHHHH
Confidence 667778888888774 678877766543 3456666666653 44444444444444443333
No 7
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.97 E-value=1.9e-28 Score=232.47 Aligned_cols=317 Identities=16% Similarity=0.161 Sum_probs=204.3
Q ss_pred cchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHH
Q 013253 56 QGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILG 134 (447)
Q Consensus 56 ~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~ 134 (447)
.+|.+|.+.+|+|+|.+|.|++.+...+...+++++.|+++||+|||+++..+..+++++. ++++++|++.+++.|+++
T Consensus 28 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~ 107 (393)
T PRK09705 28 VGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLG 107 (393)
T ss_pred cchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHH
Confidence 3899999999999999999999999888888999999999999999999999999999987 679999999999999999
Q ss_pred HhhhhhhhhhhhHHHHhhhc--ccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHH
Q 013253 135 GIATSLLFSAFESWLVAEHN--KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM 212 (447)
Q Consensus 135 G~~~~~~~~~~~~~~i~~~~--~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~ 212 (447)
|++.+...+.... ++.|+. +|++..+ .+..+...|..+|+.+ ++.+.++. .+||..+...+...++..
T Consensus 108 Gig~~~~~~~~~~-~~~~~~~~~~~~~~g----~~~~~~~~g~~~g~~~----~~~l~~~~-~~w~~~~~~~~~~~~~~~ 177 (393)
T PRK09705 108 GVGIGIIQAVMPS-VIKRRFQQRTPLVMG----LWSAALMGGGGLGAAI----TPWLVQHS-ETWYQTLAWWALPAVVAL 177 (393)
T ss_pred HhHHHHHhhhhhH-HHHHHccccchhHHH----HHHHHHHHHHHHHHHH----HHHHHHhc-CCHHHHHHHHHHHHHHHH
Confidence 9999998887755 677663 3333322 2333333444444444 44444332 245555544333333222
Q ss_pred HHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHH
Q 013253 213 VIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFAT 289 (447)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 289 (447)
.......++++ +++++++ ...++.+++++.+...+...+.....+. ...|.|.+.++ .+.+. +...+.
T Consensus 178 ~~~~~~~~~~~-~~~~~~~------~~~~~~l~~~~~~~l~~~~~~~~~~~~~-~~~~lp~~l~~-~g~s~~~ag~~~~~ 248 (393)
T PRK09705 178 FAWWWQSAREV-ASSHKTT------TTPVRVVFTPRAWTLGVYFGLINGGYAS-LIAWLPAFYIE-IGASAQYSGSLLAL 248 (393)
T ss_pred HHHHHHhcCCC-ccccCCC------cCCcccccCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-cCCChhhhhHHHHH
Confidence 22221111111 1111111 0112345667777666555554444333 57788888865 45544 677788
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccch
Q 013253 290 FMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFW 369 (447)
Q Consensus 290 ~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 369 (447)
..++.++++++.+++.||++||+. ...+..+..+........... .......+.+++.+...
T Consensus 249 ~~i~~i~g~~~~g~l~~r~~~~~~--~~~~~~l~~~~~~~~~~~~~~----------------~~~~~~~l~g~g~g~~~ 310 (393)
T PRK09705 249 MTLGQAAGALLMPAMARHQDRRKL--LMLALVLQLVGFCGFIWLPLQ----------------LPVLWAMVCGLGLGGAF 310 (393)
T ss_pred HHHHHHHHHHHHHHHHhhccchHH--HHHHHHHHHHHHHHHHHccch----------------HHHHHHHHHHHhccchH
Confidence 889999999999999999998873 333433333333222111111 11122345677777777
Q ss_pred hHHHHHHhhcCC-hhhhccccchhhhh------hhHHHHHHHHhhcc
Q 013253 370 PSIMKMRSQYIP-EEARSTIMNFFRIP------LNIFVCVVLYNVDA 409 (447)
Q Consensus 370 ~~~~~~~~~~~p-~~~r~~~~g~~~~~------~~~~~~~~l~~~~~ 409 (447)
|.......+..+ ++++++..|+.+.. .++.+.+++.+..+
T Consensus 311 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g 357 (393)
T PRK09705 311 PLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG 357 (393)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 877777777764 67788888876653 24455556666544
No 8
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.97 E-value=1.5e-28 Score=235.04 Aligned_cols=327 Identities=18% Similarity=0.165 Sum_probs=214.4
Q ss_pred chhhHHHHHHHHHHHhhhhhc----chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHH
Q 013253 36 NSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT 111 (447)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~----~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~ 111 (447)
++++|..+..++...+.++++ ++..|.+.+|+|.|+.+.|++.+...+...+++++.|+++||+|||+++..+.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 89 (406)
T PRK11551 10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVAL 89 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 446777777666666666665 7777889999999999999999988888888889999999999999999999988
Q ss_pred HHHHH-HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcc---cchhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 013253 112 YILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNK---RGFEQQWLSITFSKAIFLGNGLVAILSGLFGN 187 (447)
Q Consensus 112 ~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~---r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~ 187 (447)
..++. ++.++++++.+++.|++.|++.+...+...+ ++.|..+ |++..+. ...+..+|..+++.++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~--------~~~~~~~g~~~~~~~~~ 160 (406)
T PRK11551 90 FGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIA-LTSEAVGPRLRGTAVSL--------MYCGVPFGGALASVIGV 160 (406)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHcCHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 88865 6688999999999999999999998888756 7887733 3443332 22344566666666665
Q ss_pred hhhcccccCccchhhhHHHHHHHHHHHHHHhccccCCCCCCc--hhHHHHHHHHHHHHhcc---hhHHHHHHHHHhhhhh
Q 013253 188 LLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSES--KDLLTQFRGAAVAIASD---EKIALLGAIQSLFEGS 262 (447)
Q Consensus 188 ~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 262 (447)
.+.+ .++|+..|++.+++.++.........||++++++++ ++..++ ..+..+++ ++.+.......+....
T Consensus 161 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (406)
T PRK11551 161 LAAG--DAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAP---VLRALFGEGRATATLLLWISYFFTLIV 235 (406)
T ss_pred HHcc--ccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhh---hHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 5554 345677787766555544444444456543221111 111111 11122221 2222222222222222
Q ss_pred hhhhhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCC
Q 013253 263 MYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAP 339 (447)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 339 (447)
+.....|.|.+.++ .+.+. +.......++.++++++.|++.||+|+|+. +........+......... .
T Consensus 236 -~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~--~~~~~~~~~~~~~~~~~~~-~--- 307 (406)
T PRK11551 236 -LYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRV--VLLIYAGILASLAALAAAP-S--- 307 (406)
T ss_pred -HHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHhcC-c---
Confidence 22346678888765 34433 677778888999999999999999998773 3332222222222211111 1
Q ss_pred CCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 340 SNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
.+...+..++.+++.+...+..+++..|.+|+++|+++.|+.+..
T Consensus 308 -----------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 352 (406)
T PRK11551 308 -----------FAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAV 352 (406)
T ss_pred -----------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHh
Confidence 123445556667777667788899999999999999999887764
No 9
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2e-29 Score=225.27 Aligned_cols=340 Identities=16% Similarity=0.125 Sum_probs=241.3
Q ss_pred CcccchhhHHHHHHHHHHHhhhhhc----chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHH
Q 013253 32 SSAFNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVT 107 (447)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~ 107 (447)
++.++++|+.++...++...+..+. .-..|.+.+|.++|.+|+|.+.+..++...+.-.+.|.++||.+.|+.+..
T Consensus 20 ~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~ 99 (448)
T COG2271 20 DKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAF 99 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehH
Confidence 4456777777888877777766666 666789999999999999988787777777777899999999999999999
Q ss_pred HHHHHHHHH-HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 013253 108 YCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSG 183 (447)
Q Consensus 108 ~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~ 183 (447)
++++.++.. +.+++++.+.+.+..+++|...|.-.|.+.. .++.+ ++||+.-+. ++...++|..+.+.+..
T Consensus 100 gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~-~i~~Wfsr~eRG~~~si----Wn~shNiGGal~~~~~~ 174 (448)
T COG2271 100 GLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCAR-TITHWFSRKERGTWWSI----WNTSHNIGGALAPLVAL 174 (448)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHcCccccCceEEE----ehhhhhcccchHHHHHH
Confidence 999999975 7799999999999999999999999999867 77776 566666653 33334444434333332
Q ss_pred hhhhhhhcccccCccchhhhHHHHHHHHHHHHHHhccccCCC----------CCCchh---H-----HHHHHHHHHHHhc
Q 013253 184 LFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGD----------PSESKD---L-----LTQFRGAAVAIAS 245 (447)
Q Consensus 184 ~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~---~-----~~~~~~~~~~~~~ 245 (447)
+ +.+.. .++||..|+.++++.++..++.+.+.++++++ +++.+. . ....+.-.+.+++
T Consensus 175 l--a~~~~--~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~ 250 (448)
T COG2271 175 L--AFFAF--HGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLK 250 (448)
T ss_pred H--HHHHh--ccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHc
Confidence 1 55553 34778999999998887777666555443321 011110 0 0011123456889
Q ss_pred chhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcC--CCcchhHHHHHH
Q 013253 246 DEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARS--PPRVESYMQIVF 320 (447)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~--g~~~~~~l~~~~ 320 (447)
||.+|.+++...+....-++ +..|.|.|+.|..+.+. +...+.+-+++++|+++.|+++||+ |||. ...+.+
T Consensus 251 Nk~iW~la~a~vfvYivR~g-i~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~--p~~~i~ 327 (448)
T COG2271 251 NKLIWLLALANVFVYVVRYG-INDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRG--PMALIF 327 (448)
T ss_pred ChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccc--hHHHHH
Confidence 99999999999998888887 69999999988777766 6666777899999999999999995 4443 222222
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 321 VVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
.+.. ...+....... . . ..++..+.+++.|+..-...-..-....|..|++..|++.|+....
T Consensus 328 ~~~i-~~~~~~~w~~~-~------~----~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf 390 (448)
T COG2271 328 MLLI-TASLVLYWLAP-N------G----SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLF 390 (448)
T ss_pred HHHH-HHHHHHHHcCC-C------c----cHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhH
Confidence 2222 22222211111 0 1 1235566666667665555556667889999999999999887654
No 10
>PRK15075 citrate-proton symporter; Provisional
Probab=99.97 E-value=3.6e-28 Score=233.86 Aligned_cols=336 Identities=16% Similarity=0.228 Sum_probs=198.5
Q ss_pred hHHHHHHHHHHHhhhhhc----chhHhHhHhhcCCCCcchhHHH-HH-----HHHhhhhhccccchhhhccCchhHHHHH
Q 013253 39 KNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLF-IA-----GFGSSMLFGTIVGSLADKQGRKRACVTY 108 (447)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~----~~~l~~i~~~~g~s~~~~g~~~-~~-----~~~~~~l~~~~~G~l~Dr~Grr~~l~~~ 108 (447)
|++.....++..+.+.+| ++..|.+.+|++.++.+.+... +. .++...+++++.|+++||+||||.++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~ 92 (434)
T PRK15075 13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT 92 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence 344566666677777777 7888899999999888876432 21 2222235567899999999999999999
Q ss_pred HHHHHHHH-HHhcCchhH--------HHHHHHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHH
Q 013253 109 CLTYILSC-ITKHSPQYK--------ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNG 176 (447)
Q Consensus 109 ~~~~~i~~-l~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ 176 (447)
..++.++. +++++++++ .+++.|+++|++.+...+.... +++|+ ++|++..+......+.+..++..
T Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~-~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~ 171 (434)
T PRK15075 93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSV-YLAEIATPGRKGFYTSWQSASQQVAVVFAAL 171 (434)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHH-HHHhhCCcccchHHHHHHHHHHHHHHHHHHH
Confidence 99998876 678999887 4689999999999998887755 88887 44555555433333333333333
Q ss_pred HHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHH
Q 013253 177 LVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQ 256 (447)
Q Consensus 177 ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (447)
+|..+.+.+..... ..++||.+|++......+ .+......||+++..++++ .++.++..+...++++.+......
T Consensus 172 ~g~~l~~~~~~~~~--~~~gWr~~f~~~~~~~~~-~~~~~~~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 246 (434)
T PRK15075 172 LGYLLNQWLSPAQM--AEWGWRIPFLIGCLIVPF-IFLIRRSLEETEEFLARKH--RPSMREIFRSLAANWRIVLAGMLM 246 (434)
T ss_pred HHHHHHHhCCHHHH--hccchHHHHHHHHHHHHH-HHHHHHhcCCCHHHHHhhh--ccccccHHHHHHHhHHHHHHHHHH
Confidence 33333332222222 246788888765433222 1222112233211000000 001111233344555555443333
Q ss_pred HhhhhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHh
Q 013253 257 SLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVT 333 (447)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~ 333 (447)
.+.....+.....|.|.|+++..+.+. +.......++.+++.++.|+++||+|||+. ........... ..+...
T Consensus 247 ~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~--~~~~~~~~~~~-~~~~~~ 323 (434)
T PRK15075 247 VAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPV--LIAFTVLAILT-AYPALS 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH--HHHHHHHHHHH-HHHHHH
Confidence 333333344468889999887666654 444556678889999999999999998873 33322222111 111111
Q ss_pred hhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhh
Q 013253 334 SFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFR 393 (447)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~ 393 (447)
.....+ +. ........+.+++.+...+..+.+..|.+|++.|+++.|+.+
T Consensus 324 ~~~~~~------~~----~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~ 373 (434)
T PRK15075 324 WLVAAP------SF----ARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAY 373 (434)
T ss_pred HHHcCC------ch----HHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHH
Confidence 111000 00 122233444556666666777788999999999999988753
No 11
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.97 E-value=4.3e-28 Score=226.61 Aligned_cols=306 Identities=13% Similarity=0.083 Sum_probs=200.6
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHH
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCIT-KHSPQYKILMIGRILGG 135 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~l~-~~~~~~~~l~~~r~l~G 135 (447)
+|.+|.+.+|+|+|+.|.|++.+..++...+++++.|+++||+|||+++..+......+.+. ...+|++.+++.|+++|
T Consensus 11 ~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G 90 (368)
T TIGR00903 11 SPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAA 90 (368)
T ss_pred HhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 78889999999999999999988888878888889999999999999876655555444433 33479999999999999
Q ss_pred hhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHH
Q 013253 136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM 212 (447)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~ 212 (447)
++.+... .... .++|+ ++|++..+ ....+..+|..+++.++..+.+. ++||..|.+.+++.++..
T Consensus 91 ~g~~~~~-~~~~-~~~~~~~~~~r~~a~~--------~~~~~~~lG~~l~~~~~~~l~~~--~gWr~~f~~~~~l~~~~~ 158 (368)
T TIGR00903 91 LGQPFLL-NAFA-PAASQIREERRDLVIS--------LLSFAMYLGIIFALAAGLKIYTA--GGLQLLIIPIAAVAAAGI 158 (368)
T ss_pred hHhHHHH-HHHH-HHHHHcCHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHH
Confidence 9998654 3334 45666 33333322 23345667777777777777653 567788888777766665
Q ss_pred HHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc--hHHHHHH
Q 013253 213 VIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH--GFIFATF 290 (447)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 290 (447)
++.....||+++++++..+. ++..+..++++|+|.+|.......+.....+. ..+|.|.|+++ .+.+. +......
T Consensus 159 ~~~~~~lp~~p~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~-~~~wlp~~L~~-~g~s~~~~~~~~l~ 235 (368)
T TIGR00903 159 ILVLAALPALPFQAAEGFGF-KDAVKEFGALAGRKDLWIIGAILGFGVALFDN-LAIWLEAALRP-AGLEDIAGDAVALA 235 (368)
T ss_pred HHHHHHcCCCCCCCCCCcch-HHHHHHHHHHHcChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-CCCChHHHHHHHHH
Confidence 55555677754332221111 12223467788999999988888777777666 57899999965 33443 3333333
Q ss_pred HHHHHHHHHHHHHHhhcCCCcchhHH-HH-HHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccc
Q 013253 291 MLASMLGSSLASRLMARSPPRVESYM-QI-VFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIF 368 (447)
Q Consensus 291 ~i~~~~~~~~~g~l~dr~g~~~~~~l-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 368 (447)
...+.+..++++||..||+.+.. .. .....++..... ....+ .+..+....+.+++....
T Consensus 236 ---~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~---~~~~~------------~~~~~~~~~l~~~~~~~~ 297 (368)
T TIGR00903 236 ---ILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLAL---AFELN------------RLALFAFIGIAGLLMLPA 297 (368)
T ss_pred ---HHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHH---HHccc------------cHHHHHHHHHHHHhhhhh
Confidence 33344445788888765432112 11 222222222111 11100 013344455566666667
Q ss_pred hhHHHHHHhhcCChhhhccccchhhhh
Q 013253 369 WPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 369 ~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
++..+++.+|.+|++.|+++.|+.+..
T Consensus 298 ~~~~~~~~~~~~p~~~rgt~~G~~~~~ 324 (368)
T TIGR00903 298 YAIIMDWIGKFCDKELHGKAAGAIGFT 324 (368)
T ss_pred HHHHHHHHHHhcchhhcCcccchhhHH
Confidence 788889999999999999999998874
No 12
>PRK09952 shikimate transporter; Provisional
Probab=99.97 E-value=9.8e-28 Score=230.76 Aligned_cols=333 Identities=16% Similarity=0.091 Sum_probs=199.1
Q ss_pred hHHHHHHHHHHHhhhhhc----chhHhH-hHhhc--CCCCcchhHHH-----HHHHHhhhhhccccchhhhccCchhHHH
Q 013253 39 KNNYLLVYSLMMAGDWLQ----GPYVYY-LYSTY--GFGKGEIGQLF-----IAGFGSSMLFGTIVGSLADKQGRKRACV 106 (447)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~----~~~l~~-i~~~~--g~s~~~~g~~~-----~~~~~~~~l~~~~~G~l~Dr~Grr~~l~ 106 (447)
+++.....++..+.+++| +.+.|. +.+++ +.++. .+.+. +++++...+++++.|+++||+|||+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~ 98 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLM 98 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHH
Confidence 455666666677777777 333333 33455 66665 45432 3455555567778999999999999999
Q ss_pred HHHHHHHHHH-HHhcCchhH--------HHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHH
Q 013253 107 TYCLTYILSC-ITKHSPQYK--------ILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGL 177 (447)
Q Consensus 107 ~~~~~~~i~~-l~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~i 177 (447)
.+..++++++ ++++++|++ .+++.|+++|++.|...+.... ++.|+.+++++.. .......+..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~-~~~e~~p~~~rg~-----~~~~~~~g~~~ 172 (438)
T PRK09952 99 LTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAAL-LAVESAPKNKKAF-----YSSGVQVGYGV 172 (438)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH-HHHHhCCCCCCcH-----HHHHHHHHHHH
Confidence 9999999976 779999987 5889999999999999998755 8888843333322 11223334445
Q ss_pred HHHHhhhhhhhhhcc------cccCccchhhhHHHHHHHHHHHHHHhccccCCCCCCchh--HHHHHHHHHHHHhcchhH
Q 013253 178 VAILSGLFGNLLVDS------FSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKD--LLTQFRGAAVAIASDEKI 249 (447)
Q Consensus 178 g~~~~~~l~~~l~~~------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 249 (447)
|..++..+...+... ..|+||.+|.+.++..++..+ .....||+++..++.++ ..++..+..+.++++|+.
T Consensus 173 G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~-l~~~~~es~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 251 (438)
T PRK09952 173 GLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALW-VRNGMEESAEFEQQQHEQAAAKKRIPVIEALLRHPGA 251 (438)
T ss_pred HHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHH-HHHhCCCChhHHHHHhhcccccccCCHHHHHHHchHH
Confidence 555554443333211 247889999887766544322 22234443221110000 000001122345667776
Q ss_pred HHHHHHHHhh-hhhhhhhhhhcccccccccCCCCch---HHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHH
Q 013253 250 ALLGAIQSLF-EGSMYTFVFLWTPALSPNDEEIPHG---FIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSV 325 (447)
Q Consensus 250 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~ 325 (447)
+.......+. ....+. ...|.|.|.++..+.+.. ......++...++.++.|+++||+|||+. +..+.....+
T Consensus 252 ~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~--~~~~~~~~~~ 328 (438)
T PRK09952 252 FLKIIALRLCELLTMYI-VTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRV--YITGALIGTL 328 (438)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH--HHHHHHHHHH
Confidence 6654433333 233333 567888888777776664 23334456677888899999999998873 3333333222
Q ss_pred HHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhh
Q 013253 326 SLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFR 393 (447)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~ 393 (447)
+.......... . + ..+......++.+++.+...+..+++..|.+|++.|+++.|+..
T Consensus 329 ~~~~~~~~~~~-~------~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~ 385 (438)
T PRK09952 329 SAFPFFMALEA-Q------S----IFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGY 385 (438)
T ss_pred HHHHHHHHHHc-C------C----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHH
Confidence 22111111111 0 0 01123344555567777777888999999999999988877743
No 13
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.97 E-value=7.8e-28 Score=234.80 Aligned_cols=332 Identities=18% Similarity=0.177 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHhhhhhc----chhHhHhHhhcCCCCcc----hhH--HHHHHHHhhhhhccccchhhhccCchhHHHHHH
Q 013253 40 NNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGE----IGQ--LFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC 109 (447)
Q Consensus 40 ~~~~~~~~~~~~~~~~~----~~~l~~i~~~~g~s~~~----~g~--~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~ 109 (447)
++.+....+..+.+++| +...|.+.++++.+..+ ++. .+++.++...+++++.|+++||+|||+++..+.
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34555556666667776 55667777888644332 222 245666767788889999999999999999999
Q ss_pred HHHHHHH-HHhcCchhHH--------HHHHHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHH
Q 013253 110 LTYILSC-ITKHSPQYKI--------LMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGL 177 (447)
Q Consensus 110 ~~~~i~~-l~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~i 177 (447)
++++++. ++++++|++. +++.|+++|++.|...+.... +++|+ ++|++..+.. ..+...|..+
T Consensus 95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~-~~~e~~p~~~Rg~~~~~~----~~~~~~G~~l 169 (490)
T PRK10642 95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASI-FVAEYSPDRKRGFMGSWL----DFGSIAGFVL 169 (490)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHH-HHHHhCCCCCCcHHHHHH----HHHHHHHHHH
Confidence 9999986 7799999875 899999999999999998866 89998 3444443332 2233334444
Q ss_pred HHHHhhhhhhhhhc--ccccCccchhhhHHHHHHHHHHHHHHhccccCCCCCCch---h-HH----HHHHHHHHHHhc-c
Q 013253 178 VAILSGLFGNLLVD--SFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESK---D-LL----TQFRGAAVAIAS-D 246 (447)
Q Consensus 178 g~~~~~~l~~~l~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~----~~~~~~~~~~~~-~ 246 (447)
|..+...+...+.+ ...|+||.+|++..++.++..++ ....||++...++.+ + .. ++.+.+.+++++ +
T Consensus 170 g~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (490)
T PRK10642 170 GAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYL-RHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKH 248 (490)
T ss_pred HHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHH-HHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHHh
Confidence 44443333332221 13578899998876655543333 334565432100000 0 00 000112333333 2
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHH
Q 013253 247 EKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVS 323 (447)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~ 323 (447)
++.+.......+.....+.....|.|.++++..+.+. +.......++..++.++.|+++||+|||+. +..+....
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~--~~~~~~~~ 326 (490)
T PRK10642 249 WRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPF--VILGSVAL 326 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH--HHHHHHHH
Confidence 3333333222222223333357789998876666654 334455567788899999999999999873 33333222
Q ss_pred HHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccch
Q 013253 324 SVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNF 391 (447)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~ 391 (447)
.+........... ++ ........++.+++.+...+....+..|.+|++.|+++.|+
T Consensus 327 ~~~~~~~~~~~~~--------~~----~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~ 382 (490)
T PRK10642 327 FVLAIPAFILINS--------NV----IGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAA 382 (490)
T ss_pred HHHHHHHHHHHhC--------CC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHH
Confidence 2111111111111 00 01334455666666666667778888999999999998886
No 14
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.97 E-value=5.8e-28 Score=234.38 Aligned_cols=326 Identities=14% Similarity=0.079 Sum_probs=201.1
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G 135 (447)
.|.+|.+.+|+|+|..+.+++.+...+...++.++.|+++||+|||+++..+.++.+++. +++++++++.+++.|++.|
T Consensus 56 ~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G 135 (476)
T PLN00028 56 APLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIG 135 (476)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 788899999999999999988777766666777899999999999999999998888876 5688999999999999999
Q ss_pred hhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc---cccCccchhhhHHHHHH
Q 013253 136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS---FSLGPVAPFDAAACFLA 209 (447)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~---~~~~~~~~f~~~~~~~~ 209 (447)
++.+...+ ... +++|+ ++|+...+.. .....+|..++..+.+.+...+.+. ...+||..|.+.+++.+
T Consensus 136 ~~~~~~~~-~~~-~i~~~~~~~~rg~a~g~~----~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l 209 (476)
T PLN00028 136 FSLATFVS-CQY-WMSTMFNGKIVGTANGIA----AGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHI 209 (476)
T ss_pred HHHHhhHH-HHH-HHHHhcChhheeHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Confidence 99886543 334 67776 3445544422 2223345555555555544332221 11367888888777766
Q ss_pred HHHHHHHHhccccCCCCC--Cch----hHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc
Q 013253 210 IGMVIILSSWTENYGDPS--ESK----DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH 283 (447)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (447)
+..+.... .++++++.+ +.+ ...++..+..++.++++++|...+...+.....+. ...+.|.|+.+..+.+.
T Consensus 210 ~~~l~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~g~s~ 287 (476)
T PLN00028 210 IMGILVLT-LGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELT-MDNIIAEYFYDRFGLSL 287 (476)
T ss_pred HHHHHHHH-HcCcCCCCchhhHHhcCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHH-HHhHHHHHHHHhcCCCH
Confidence 55444442 232221110 000 00111123345567788887766655444333333 46678888866666665
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHhhcCCCcch----hHHH-HHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHH
Q 013253 284 ---GFIFATFMLASMLGSSLASRLMARSPPRVE----SYMQ-IVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQL 355 (447)
Q Consensus 284 ---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~----~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (447)
+...+...++.++++++.|+++||++||+. +... ....+.++.... .... ++ .+...
T Consensus 288 ~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~---~~~~--------~~----~~~~~ 352 (476)
T PLN00028 288 ETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIW---LGRA--------NS----LGAAI 352 (476)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHH---hccc--------ch----HHHHH
Confidence 566677778999999999999999986521 1111 111111111111 1111 00 01334
Q ss_pred HHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhhh--hHHHHHHHHh
Q 013253 356 LGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPL--NIFVCVVLYN 406 (447)
Q Consensus 356 ~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~--~~~~~~~l~~ 406 (447)
+..++.+++.+...+..+++..+.. ++.++++.|+.+... +..+++.+.+
T Consensus 353 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~ 404 (476)
T PLN00028 353 VVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF 404 (476)
T ss_pred HHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH
Confidence 4455556655555566666667764 467899988876642 3344444544
No 15
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.97 E-value=3.5e-28 Score=233.10 Aligned_cols=339 Identities=16% Similarity=0.093 Sum_probs=220.3
Q ss_pred HHHHHHHHHHhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHh
Q 013253 41 NYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK 119 (447)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~ 119 (447)
.++....+..++.++..+.+|.+.++++.++.+.|++.+...+...+++++.|+++||+|||+++..+..+.+++. ..+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~ 100 (417)
T PRK10489 21 AVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLA 100 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHH
Confidence 3444456666777777888888889999999999999998888888899999999999999999999887776653 222
Q ss_pred -----cCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 013253 120 -----HSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS 194 (447)
Q Consensus 120 -----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~ 194 (447)
..++++.+++.|++.|++.+...+...+ ++.|..+++++.... + ....+..+|..+++.+++.+.+..+
T Consensus 101 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~-~~~~~~~~g~~~g~~l~g~l~~~~~ 174 (417)
T PRK10489 101 LNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLA-ATPALVGRENLMQAG----A-ITMLTVRLGSVISPALGGLLIAAGG 174 (417)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhh-hhhhccCHHHHHHHH----H-HHHHHHhHHHHhHHHHHHHHHHHHh
Confidence 2678899999999999998887777655 666663333222211 1 2223455666777777777765555
Q ss_pred cCccchhhhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhccccc
Q 013253 195 LGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPAL 274 (447)
Q Consensus 195 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (447)
|+| .|...+...++..+.. .+.|+.+++++++++..++..+..+..+++|.++...+...+.. .... ...+.|.|
T Consensus 175 ~~~--~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~p~~ 249 (417)
T PRK10489 175 VAW--NYGLAAAGTFITLLPL-LRLPALPPPPQPREHPLRSLLAGFRFLLASPVVGGIALLGGLLT-MASA-VRVLYPAL 249 (417)
T ss_pred hHH--HHHHHHHHHHHHHHHH-HhCCCCCCCCcccccchHHHHHHHHHHHcChHHHHHHHHHHHHH-HHHh-HHHhhHHH
Confidence 554 4555554444443333 35555433222222223334445566777777655443333222 2222 46678888
Q ss_pred ccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccch
Q 013253 275 SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSG 351 (447)
Q Consensus 275 ~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (447)
.++..+.+. +...+...++.+++.++.+++.||.++++ .+..+..+..+.......... .
T Consensus 250 ~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~---------------~ 312 (417)
T PRK10489 250 ADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGL--LMLLSTLGSFLAVGLFGLMPM---------------W 312 (417)
T ss_pred HHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcch--HHHHHHHHHHHHHHHHHccch---------------H
Confidence 877666654 66777788899999999999999865554 244444433333332221111 1
Q ss_pred hhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh------hhHHHHHHHHhh
Q 013253 352 SLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNV 407 (447)
Q Consensus 352 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~ 407 (447)
+...+..++.|++.+...+...++.+|..|++.|++++|+.+.. .+..+.+.+.+.
T Consensus 313 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~ 374 (417)
T PRK10489 313 ILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM 374 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH
Confidence 24455667777777777788889999999999999999887653 333445555554
No 16
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.97 E-value=6.5e-28 Score=231.96 Aligned_cols=332 Identities=12% Similarity=0.002 Sum_probs=204.7
Q ss_pred hhHHHHHHHHHHHhhhhhc----chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHH
Q 013253 38 FKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYI 113 (447)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~----~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~ 113 (447)
+++......++..+...++ .+.+|.+.+++|+|+.+.|++.+...+...+++++.|+++||+|||+++.++.++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~ 99 (434)
T PRK11663 20 WRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG 99 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence 3444444444444444332 677889999999999999999888888888999999999999999999999999998
Q ss_pred HHH-HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhc---ccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 013253 114 LSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHN---KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLL 189 (447)
Q Consensus 114 i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l 189 (447)
++. +.++++|++.+++.|++.|++.|...+.... ++.|+. +|++..+. ...+..+|..+++.+.+.+
T Consensus 100 ~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~-~~~~~~~~~~rg~~~~~--------~~~~~~~g~~~~~~~~~~l 170 (434)
T PRK11663 100 IINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAK-LLTAWYSRTERGGWWAI--------WNTAHNVGGALIPLVVGAI 170 (434)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHH-HHHHhCCHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 876 6688999999999999999999988887755 777773 34443332 2233446666777777776
Q ss_pred hcccccCccchhhhHHHHHHHHHHHHHHhccccCCCC---------CCchhH-H------HHHHHHH-HHHhcchhHHHH
Q 013253 190 VDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDP---------SESKDL-L------TQFRGAA-VAIASDEKIALL 252 (447)
Q Consensus 190 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~------~~~~~~~-~~~~~~~~~~~~ 252 (447)
.+. ++||..|.+.+++.++..+......+|++.+. +++++. . .+.++.. +..+++++++..
T Consensus 171 ~~~--~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (434)
T PRK11663 171 ALH--YGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLL 248 (434)
T ss_pred HHc--ccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHH
Confidence 654 56677787766655444333332334322110 000000 0 0111111 125667777776
Q ss_pred HHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCC--CcchhHHHHHHHHHHHHH
Q 013253 253 GAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSP--PRVESYMQIVFVVSSVSL 327 (447)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g--~~~~~~l~~~~~~~~~~~ 327 (447)
.....+...... ....|.|.|+++..+.+. +...+...+++.+++++.|+++||+. +|+. .............
T Consensus 249 ~~~~~~~~~~~~-~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~-~~~~~~~~~~~~~ 326 (434)
T PRK11663 249 SFSYVLVYVVRA-AINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGP-MNLIFAAGILLSV 326 (434)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccH-HHHHHHHHHHHHH
Confidence 655444444433 356789999866666655 55667777899999999999999983 2221 1111111111111
Q ss_pred HHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 328 LLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
......... + ........+..|++.............|..|++.|+++.|+.++.
T Consensus 327 ~~~~~~~~~---------~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 381 (434)
T PRK11663 327 GSLWLMPFA---------S----YVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLF 381 (434)
T ss_pred HHHHHcccc---------c----HHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHH
Confidence 111111111 0 012222223333322222233456678999999999999988764
No 17
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.97 E-value=4.7e-27 Score=222.81 Aligned_cols=328 Identities=15% Similarity=0.163 Sum_probs=212.5
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G 135 (447)
.+.+|++.+|+|.++++.|+..+.......+++++.|+++||+|||+.+..+.++.+++. ++.+++|++.+++.|+++|
T Consensus 40 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 119 (394)
T PRK10213 40 VSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLG 119 (394)
T ss_pred HhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 668889999999999999998888888888889999999999999999999999998876 6688999999999999999
Q ss_pred hhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHH
Q 013253 136 IATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII 215 (447)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~ 215 (447)
++.+...+...+ ++.|+.+++++..... ....+..+|..++|.+++.+.+. ++||..|++.+++.++..+..
T Consensus 120 ~~~g~~~~~~~~-~i~~~~~~~~~~~a~~-----~~~~~~~~g~~ig~~l~~~l~~~--~gw~~~f~~~~~l~~~~~l~~ 191 (394)
T PRK10213 120 LALGGFWAMSAS-LTMRLVPPRTVPKALS-----VIFGAVSIALVIAAPLGSFLGEL--IGWRNVFNAAAVMGVLCIFWI 191 (394)
T ss_pred HhhHHHHHHHHH-HHHHHcCHhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHHH
Confidence 999998888755 7777733333322111 22223446666777777777654 456777877766665544444
Q ss_pred HHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcc-cccccccCCCCc---hHHHHHHH
Q 013253 216 LSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWT-PALSPNDEEIPH---GFIFATFM 291 (447)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~ 291 (447)
....||+++++++. .+..++.+|+|+++.......+.....+.. ..+. |.+.+ ..+.+. +......+
T Consensus 192 ~~~~p~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~-~~g~s~~~~g~~~~~~~ 262 (394)
T PRK10213 192 IKSLPSLPGEPSHQ-------KQNTFRLLQRPGVMAGMIAIFMSFAGQFAF-FTYIRPVYMN-LAGFGVDGLTLVLLSFG 262 (394)
T ss_pred HHHCCCCCcccccc-------hhHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-hcCCChhHHHHHHHHHH
Confidence 44456543221111 112335677888877655444444443332 3444 55554 334444 66777788
Q ss_pred HHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhH
Q 013253 292 LASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPS 371 (447)
Q Consensus 292 i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 371 (447)
++.+++..+.+++.||.+++. +.....+...+.......... .+......++.|++.+...+.
T Consensus 263 ~~~iig~~~~~~l~~r~~~~~---l~~~~~~~~~~~~~l~~~~~~--------------~~~~~~~~~l~G~~~~~~~~~ 325 (394)
T PRK10213 263 IASFVGTSLSSFILKRSVKLA---LAGAPLVLAVSALVLTLWGSD--------------KIVATGVAIIWGLTFALVPVG 325 (394)
T ss_pred HHHHHHHHHHHHHHhccchhH---HHHHHHHHHHHHHHHHHHhhh--------------HHHHHHHHHHHHHHHHhhhHH
Confidence 899999999999999954332 333322222222221111111 134556778888898888898
Q ss_pred HHHHHhhcCChhhhccccchh----hh--hhhHHHHHHHHhhcccchHHHHHHHHH
Q 013253 372 IMKMRSQYIPEEARSTIMNFF----RI--PLNIFVCVVLYNVDAFPITVMFGMCSI 421 (447)
Q Consensus 372 ~~~~~~~~~p~~~r~~~~g~~----~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~ 421 (447)
..+.+++..|++ +++..+.. +. ..+..+++.+.+.. +....+..+++
T Consensus 326 ~~~~~~~~~~~~-~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~--g~~~~~~~~~~ 378 (394)
T PRK10213 326 WSTWITRSLADQ-AEKAGSIQVAVIQLANTCGAAIGGYALDNI--GLTSPLMLSGT 378 (394)
T ss_pred HHHHHHHHCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ChhhHHHHHHH
Confidence 898999988854 33333322 21 24556667776653 34344444433
No 18
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.97 E-value=2.5e-27 Score=226.11 Aligned_cols=347 Identities=15% Similarity=0.099 Sum_probs=209.1
Q ss_pred HHHHHHHHHhhhhhcchhHhH-hHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHh
Q 013253 42 YLLVYSLMMAGDWLQGPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK 119 (447)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~l~~-i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~ 119 (447)
.....++..++.++..|.+|. +.+++|.|+.++|++.+...+...+.+++.|+++||+||||++..+.++.+++. .+.
T Consensus 20 l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~ 99 (399)
T PRK05122 20 IVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYL 99 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHH
Confidence 444455566677777888886 568999999999999999999889999999999999999999999998887653 322
Q ss_pred ---cC-----chhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 013253 120 ---HS-----PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL 188 (447)
Q Consensus 120 ---~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~ 188 (447)
+. .+++.+++.|+++|++.+...+.... ++.|. ++|++..+... .+..+|..+++.+++.
T Consensus 100 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~--------~~~~~g~~~g~~l~~~ 170 (399)
T PRK05122 100 LAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSIL-WGIGRVGALHTGRVISWNG--------IATYGALAIGAPLGVL 170 (399)
T ss_pred HhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHH-HHHhhcChhhhccchhhhh--------hhhhHHHHHHHHHHHH
Confidence 22 25678999999999999999888755 55555 44444433222 2334555666666666
Q ss_pred hhcccccCccchhhhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhh
Q 013253 189 LVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVF 268 (447)
Q Consensus 189 l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (447)
+.+.. +|+..+.+...+.++..+.. ...|++++++++ + ++.+ +.+++ .+.......+.... +....
T Consensus 171 l~~~~--g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~---~~~~----~~~~~--~~~~~~~~~~~~~~-~~~~~ 236 (399)
T PRK05122 171 LYHWG--GLAGLGLLIMLLALLGLLLA-RPRPAVPPVKGE-R---LPFR----RVLGR--VWPYGMGLALASIG-FGTIA 236 (399)
T ss_pred HHHcc--cHHHHHHHHHHHHHHHHHHH-hcCCCCCCCCcc-c---hhHH----HHHHH--HHHHHHHHHHHHHH-HHHHH
Confidence 66544 55666665554443332222 222332211111 1 1111 11111 11111111111111 22234
Q ss_pred hcccccccccCCCC-chHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcc
Q 013253 269 LWTPALSPNDEEIP-HGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGI 347 (447)
Q Consensus 269 ~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (447)
.+.|.+.++. +.+ .+.......++.+++++..+++.||+++|+. +..+..+..+...........
T Consensus 237 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~----------- 302 (399)
T PRK05122 237 TFITLYYAAR-GWDGAALALTLFGVAFVGARLLFGNLINRLGGLRV--AIVSLLVEILGLLLLWLAPSP----------- 302 (399)
T ss_pred HHHHHHHHHc-ccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHHHHHHHhccH-----------
Confidence 4556555432 322 3566667778889999999999999988763 433333333333332221111
Q ss_pred ccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhhhh------HHHHHHHHhhcccchHHHHHHHHH
Q 013253 348 SFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLN------IFVCVVLYNVDAFPITVMFGMCSI 421 (447)
Q Consensus 348 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~ 421 (447)
+...+..++.|++.+..+|.......|..|++.|+++.|+.+...+ ..+.+.+.+.. ++...+...+.
T Consensus 303 ----~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~ 376 (399)
T PRK05122 303 ----WMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF--GYPSIFLAAAL 376 (399)
T ss_pred ----HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CHHHHHHHHHH
Confidence 2445667788888888888888888899999999999988776421 22334444442 34444444444
Q ss_pred HHHHHHHHhh
Q 013253 422 FLLVASVLQR 431 (447)
Q Consensus 422 ~~~~~~~~~~ 431 (447)
..+++.....
T Consensus 377 ~~~~~~~~~~ 386 (399)
T PRK05122 377 AALLGLALTW 386 (399)
T ss_pred HHHHHHHHHH
Confidence 4444433333
No 19
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.96 E-value=1.2e-27 Score=228.20 Aligned_cols=332 Identities=14% Similarity=0.113 Sum_probs=214.2
Q ss_pred hhhHHHHHHHHHHHhhhhhc----chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHH
Q 013253 37 SFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTY 112 (447)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~----~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~ 112 (447)
|.+|+.....++....+.++ +...|.+.+|+|+|+.++|++.+..++...+++++.|+++||+|||+++..+.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 44566666666666666666 66677888999999999999999888888888999999999999999999999999
Q ss_pred HHHH-HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhc---ccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 013253 113 ILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHN---KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL 188 (447)
Q Consensus 113 ~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~ 188 (447)
+++. ++++++|++.+++.|+++|++.+...+.... ++.|+- +|++..+. ...+..+|..+++.+++.
T Consensus 84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~-~~~~~~~~~~rg~~~~~--------~~~~~~~g~~~~~~~~~~ 154 (412)
T TIGR02332 84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILL-YLTFWFPAYFRARANAL--------FMIAMPVTMALGLILSGY 154 (412)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHcCHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 9876 6688999999999999999999999887755 778873 34443332 223444566666666665
Q ss_pred hhcc----cccCccchhhhHHHHHHHHHHHHHHhccccCCCCC---C-chhHH-HH---------------------HHH
Q 013253 189 LVDS----FSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPS---E-SKDLL-TQ---------------------FRG 238 (447)
Q Consensus 189 l~~~----~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~-~~---------------------~~~ 238 (447)
+.+. ..++||..|.+.++..++.........||++++.+ + +++.. +. .+.
T Consensus 155 l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (412)
T TIGR02332 155 ILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRS 234 (412)
T ss_pred HHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHH
Confidence 5432 23578888888777666554444445566543211 0 00000 00 001
Q ss_pred HHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccc-cCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchh
Q 013253 239 AAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN-DEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVES 314 (447)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~ 314 (447)
.+++++ ++.++.......+.....+. ..+|.|.++++ +.+.+. +.......++..++.++.|+++||+++|+.
T Consensus 235 ~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~- 311 (412)
T TIGR02332 235 MLREIF-TPAIMLYTLAYFCLTNTLSA-INIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH- 311 (412)
T ss_pred HHHHhc-ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH-
Confidence 122222 35666655555554444444 57899999976 334433 666677788999999999999999987763
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhh
Q 013253 315 YMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRI 394 (447)
Q Consensus 315 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 394 (447)
..........+...+ ... .. + . ........+.+++.....+.......|.+|++.|+++.|+.+.
T Consensus 312 ~~~~~~~~~~~~~~~-~~~-~~--------~--~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~ 376 (412)
T TIGR02332 312 HTALPYLFAAAGWLL-ASA-TD--------H--N---LIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINA 376 (412)
T ss_pred HHHHHHHHHHHHHHH-HHh-cC--------C--H---HHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHH
Confidence 122222222222211 111 11 0 0 1112222233333333334455566788999999999998887
Q ss_pred h
Q 013253 395 P 395 (447)
Q Consensus 395 ~ 395 (447)
.
T Consensus 377 ~ 377 (412)
T TIGR02332 377 T 377 (412)
T ss_pred h
Confidence 5
No 20
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.96 E-value=1e-27 Score=238.51 Aligned_cols=178 Identities=17% Similarity=0.159 Sum_probs=129.2
Q ss_pred cchhhHHHHHHHHHHHhhhhhc----chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHH
Q 013253 35 FNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCL 110 (447)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~----~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~ 110 (447)
..+++|.++.++.+..+.++++ ++.+|.+.+++|++..+.+++.+..++...++++++|+++||+|||+.++++.+
T Consensus 161 ~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~li 240 (742)
T TIGR01299 161 HGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS 240 (742)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 4567777777777777777665 677888889999999999999888888888888899999999999999999999
Q ss_pred HHHHHH-HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcc---cchhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 013253 111 TYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNK---RGFEQQWLSITFSKAIFLGNGLVAILSGLFG 186 (447)
Q Consensus 111 ~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~---r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~ 186 (447)
+.+++. +++++++++.+++.|++.|++.+...+.... ++.|..+ |++..+..... ..+|.++++.++
T Consensus 241 l~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~-~isE~~p~~~Rg~~~g~~~~~--------~~iG~ila~~la 311 (742)
T TIGR01299 241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFS-YFAEFLAQEKRGEHLSWLCMF--------WMIGGIYAAAMA 311 (742)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Confidence 888875 6688999999999999999999999888755 8888843 34433332222 233444444433
Q ss_pred hhhhcccc-----------cCccchhhhHHHHHHHHHHHHHHhcccc
Q 013253 187 NLLVDSFS-----------LGPVAPFDAAACFLAIGMVIILSSWTEN 222 (447)
Q Consensus 187 ~~l~~~~~-----------~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 222 (447)
..+....+ ++||..+++.++..++.++. .+..||+
T Consensus 312 ~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~-~~~lPES 357 (742)
T TIGR01299 312 WAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGA-LTFMPES 357 (742)
T ss_pred HHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHH-HHHcCCC
Confidence 33332222 35777777766655544333 3355664
No 21
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.96 E-value=1.5e-27 Score=228.23 Aligned_cols=348 Identities=14% Similarity=0.091 Sum_probs=219.0
Q ss_pred cchhhHHHHHHHHHHHhhhhhc----chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHH
Q 013253 35 FNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCL 110 (447)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~----~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~ 110 (447)
+++.+|+.+..+++..+.+.++ .+..|.+.+++|.|+.+.+++.+...+...+++++.|+++||+|||+++..+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 85 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV 85 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4456677666666666666655 778889999999999999999999988888999999999999999999999999
Q ss_pred HHHHHH-HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhc---ccchhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 013253 111 TYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHN---KRGFEQQWLSITFSKAIFLGNGLVAILSGLFG 186 (447)
Q Consensus 111 ~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~ 186 (447)
+.+++. +.+++++++.+++.|++.|++.+...+...+ ++.|.. +|++..+. ...+..+|..+++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~--------~~~~~~~g~~~~~~l~ 156 (405)
T TIGR00891 86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAA-YVIESWPKHLRNKASGL--------LISGYAVGAVVAAQVY 156 (405)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHH-HHHHhCChhhhhHHHHH--------HHHHHHHHHHHHHHHH
Confidence 888876 6688999999999999999999999888766 777773 33343332 2234446666666666
Q ss_pred hhhhcccccCccchhhhHHHHHHHHHHHHHHhccccCCCCCCch---hHHHHHHH---H---HHH--------H----hc
Q 013253 187 NLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESK---DLLTQFRG---A---AVA--------I----AS 245 (447)
Q Consensus 187 ~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~---~~~--------~----~~ 245 (447)
+.+.+..+.+||..|.+..+..++..+ .....||+++.+++++ +..+..++ . .+. . .+
T Consensus 157 ~~l~~~~~~~w~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (405)
T TIGR00891 157 SLVVPVWGDGWRALFFISILPIIFALW-LRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGK 235 (405)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHH-HHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhh
Confidence 666554454577777765544444333 3335565432111100 00000000 0 000 0 00
Q ss_pred chh-HHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHH
Q 013253 246 DEK-IALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFV 321 (447)
Q Consensus 246 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~ 321 (447)
++. +........+...... ....+.|.+..+..+.+. +...+...++.++++++.+++.||+|||+. +.....
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~--~~~~~~ 312 (405)
T TIGR00891 236 RWPTFVYLVVLVLFANLYSH-PIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKA--YVCSLL 312 (405)
T ss_pred hhHHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhh--hHHHHH
Confidence 111 1111112222222222 245677888766666654 566677788999999999999999998873 333333
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh------
Q 013253 322 VSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------ 395 (447)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------ 395 (447)
...+........... .+...+..++.++..+...+...++.+|..|++.|++++|+.+..
T Consensus 313 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~ 378 (405)
T TIGR00891 313 AGQLLIIPVFAIGAN--------------VAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGA 378 (405)
T ss_pred HHHHHHHHHHHhCCc--------------hHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHH
Confidence 222221111111111 123344445555666666778888999999999999999887653
Q ss_pred hhHHHHHHHHhhcc
Q 013253 396 LNIFVCVVLYNVDA 409 (447)
Q Consensus 396 ~~~~~~~~l~~~~~ 409 (447)
.++.+.+.+.+..+
T Consensus 379 ~g~~~~g~l~~~~g 392 (405)
T TIGR00891 379 LAPIIGALLAQRLD 392 (405)
T ss_pred HHHHHHHHHHHhcc
Confidence 23344455555533
No 22
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.96 E-value=9.6e-27 Score=222.44 Aligned_cols=320 Identities=14% Similarity=0.184 Sum_probs=210.3
Q ss_pred hhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHH
Q 013253 53 DWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGR 131 (447)
Q Consensus 53 ~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r 131 (447)
.....|.+|.+.+|+|.|+.+.++..+...+...+.+++.|+++||+||||++..+..+.+++. +..++++++.+++.|
T Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (406)
T PRK15402 29 NDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLR 108 (406)
T ss_pred hhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 3334788888999999999999988888888788888999999999999999999998888876 567889999999999
Q ss_pred HHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHH
Q 013253 132 ILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIG 211 (447)
Q Consensus 132 ~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~ 211 (447)
+++|++.+...+...+ .+.|..++.++...... ...+..++..++|.+++.+.+.. +|+..|++.+++.++.
T Consensus 109 ~l~G~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~i~~~l~~~~--~w~~~~~~~~~~~~~~ 180 (406)
T PRK15402 109 FLQGIGLCFIGAVGYA-AIQESFEEADAIKITAL-----MANVALLAPLLGPLVGAALIHVL--PWRGMFVLFAALAALS 180 (406)
T ss_pred HHHHhHhhhHHHHHHH-HHHHHhChhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcc--CccHHHHHHHHHHHHH
Confidence 9999999888776655 66766332222221111 11123355666777777766544 4566777766666655
Q ss_pred HHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHH
Q 013253 212 MVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFA 288 (447)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 288 (447)
........||++++++++. ..++..++.++.+++|+++.......+....... ...+.|.+.++..+.+. +....
T Consensus 181 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~g~~~~~~g~~~~ 258 (406)
T PRK15402 181 FFGLWRAMPETAGRVGEKL-SLKELGRDYKLVLKNRRFVAGALALGLVSLPLLA-WIALSPVILISGEQLSSYEYGLLQV 258 (406)
T ss_pred HHHHHHhCCCCCccccccc-cHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHhCCCHHHHHHHHH
Confidence 5544445566543322221 1233445667788999888776665554443333 34556777766566655 44445
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccc
Q 013253 289 TFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIF 368 (447)
Q Consensus 289 ~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 368 (447)
...++.+++.++.+++.||+++|+. +..+.....+............. + ..+.......+.+++.+..
T Consensus 259 ~~~~~~~~g~~~~g~l~~r~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~------~----~~~~~~~~~~~~g~g~~~~ 326 (406)
T PRK15402 259 PVFGALIAGNLTLARLTSRRPLRSL--IRMGLWPMVAGLLLAALATVISS------H----AYLWLTAGLSLYAFGIGLA 326 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHHHHHHHHHHHccc------c----cHHHHHHHHHHHHHHHHHH
Confidence 5566788899999999999987763 44444433333333322221100 0 0124456677788888877
Q ss_pred hhHHHHHHhhcCChhhhccccchhhhh
Q 013253 369 WPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 369 ~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
.+..+...... ++++|++..+..++.
T Consensus 327 ~~~~~~~~~~~-~~~~~g~~~~~~~~~ 352 (406)
T PRK15402 327 NAGLYRLTLFS-SDVSKGTVSAAMGML 352 (406)
T ss_pred hhhHHHHHhhh-ccccccHHHHHHHHH
Confidence 77666665444 447788888776653
No 23
>PRK10133 L-fucose transporter; Provisional
Probab=99.96 E-value=9.2e-27 Score=223.23 Aligned_cols=315 Identities=12% Similarity=0.127 Sum_probs=203.5
Q ss_pred hhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HH---hcCchhHHH
Q 013253 52 GDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT---KHSPQYKIL 127 (447)
Q Consensus 52 ~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~---~~~~~~~~l 127 (447)
......+++|.+.+++|+|+.+.|+..+...+...+.+++.|+++||+||||++..+..+++++. ++ .++++++.+
T Consensus 41 ~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~l 120 (438)
T PRK10133 41 ANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLF 120 (438)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 44444888999999999999999999888888888889999999999999999999999999876 33 568999999
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHhhhcccch---hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh-------------hc
Q 013253 128 MIGRILGGIATSLLFSAFESWLVAEHNKRGF---EQQWLSITFSKAIFLGNGLVAILSGLFGNLL-------------VD 191 (447)
Q Consensus 128 ~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~---~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l-------------~~ 191 (447)
++.|+++|++.+...+...+ ++.|..++.+ ..+.. .....+|..+|+.+++.+.... .+
T Consensus 121 l~~r~l~G~g~g~~~~~~~~-~v~~~~~~~~~~~~~s~~----~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~ 195 (438)
T PRK10133 121 LVGLFIIAAGLGCLETAANP-FVTVLGPESSGHFRLNLA----QTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPE 195 (438)
T ss_pred HHHHHHHHHHHHHHHhhHHH-HHHHhCChhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChh
Confidence 99999999999999998866 6666622222 23332 2233334444444443322100 00
Q ss_pred -cccc------CccchhhhHH-HHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhh
Q 013253 192 -SFSL------GPVAPFDAAA-CFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSM 263 (447)
Q Consensus 192 -~~~~------~~~~~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (447)
..+| +||.+|+... +..++..+....+.||.++++++ ++..++..+..++++++|+++...+...+.....
T Consensus 196 ~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~ 274 (438)
T PRK10133 196 QLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS-DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQ 274 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc-cccccchhhhHHHHHhCchHHHHHHHHHHHHHHH
Confidence 0123 4666675433 33333333333344543221111 1111122234557788888776555554444444
Q ss_pred hhhhhhcccccc-cccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCC
Q 013253 264 YTFVFLWTPALS-PNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAP 339 (447)
Q Consensus 264 ~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 339 (447)
+. ...|.+.|+ ++..+.++ +..+....++.+++++..+++.||+|+|+. +..+..+....+.+.... ..
T Consensus 275 ~~-~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~--l~~~~~~~~~~~~~~~~~-~~--- 347 (438)
T PRK10133 275 TA-CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV--LAAYALIAMALCLISAFA-GG--- 347 (438)
T ss_pred HH-HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH--HHHHHHHHHHHHHHHHHc-CC---
Confidence 43 355677774 55667766 667788889999999999999999998873 433333333222222111 11
Q ss_pred CCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchh
Q 013253 340 SNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFF 392 (447)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~ 392 (447)
...+..+.+.+++.+..+|..++...|..|++ .+++.++.
T Consensus 348 ------------~~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~ 387 (438)
T PRK10133 348 ------------HVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFI 387 (438)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHH
Confidence 12355677889999999999999999998875 44444443
No 24
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.96 E-value=9e-28 Score=227.35 Aligned_cols=311 Identities=14% Similarity=0.057 Sum_probs=205.1
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G 135 (447)
.+++|.+.+|+|+|++++|++.+...+...+.+++.|+++||+|||+++..+.++.+++. ++++++|++.+++.|++.|
T Consensus 23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 102 (377)
T TIGR00890 23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLAS 102 (377)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788899999999999999999999999888999999999999999999999999998876 6689999999999999999
Q ss_pred hhhhhhhhhhhHHHHhhh--cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHH
Q 013253 136 IATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV 213 (447)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~ 213 (447)
++.+...+.... .+.|+ ++|++..+ ....+..+|..+++.+.+.+.+. ++||..|...+++.++...
T Consensus 103 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~ 171 (377)
T TIGR00890 103 AGVGIAYGIALN-TAVKWFPDKRGLASG--------IIIGGYGLGSFILSPLITSVINL--EGVPAAFIYMGIIFLLVIV 171 (377)
T ss_pred HHHHHHHHhHHH-HHHHHcCcccHHHHH--------HHHHhcchhHhHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHH
Confidence 999988776655 56665 33444333 22334445555544444444433 4667778877776665544
Q ss_pred HHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHH
Q 013253 214 IILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATF 290 (447)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 290 (447)
......++++++++++++..++.+...++.+|+++.+.......+....... ...+.+.+.++ .+.+. +...+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~ 249 (377)
T TIGR00890 172 LGAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLL-LIGLYKPYGQS-LGLSDGFLVLAVSIS 249 (377)
T ss_pred HHHHheecCchhccccCcccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHH-HHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 4443333322211111111111122345677788777665444443333222 23344445433 34433 5666777
Q ss_pred HHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchh
Q 013253 291 MLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWP 370 (447)
Q Consensus 291 ~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 370 (447)
.++.++++++.+++.||++||+. +..+.....+........... . .+.......+.+++.+...+
T Consensus 250 ~~~~~~~~~~~g~l~dr~g~~~~--~~~~~~~~~~~~~~~~~~~~~-----------~--~~~~~~~~~~~g~~~g~~~~ 314 (377)
T TIGR00890 250 SIFNGGGRPFLGALSDKIGRQKT--MSIVFGISAVGMAAMLFIPML-----------N--DVLFLATVALVFFTWGGTIS 314 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHcccc-----------h--hHHHHHHHHHHHHHhccchh
Confidence 88899999999999999998873 444444443333332211111 0 01233445566777777777
Q ss_pred HHHHHHhhcCChhhhccccchhhhh
Q 013253 371 SIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 371 ~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
...++.+|.+|+++|+++.|+.+..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~g~~~~~ 339 (377)
T TIGR00890 315 LFPSLVSDIFGPANSAANYGFLYTA 339 (377)
T ss_pred ccHHHHHHHhhhhhhhhHhHHHHHH
Confidence 7888999999999999999987764
No 25
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.96 E-value=2.8e-27 Score=222.99 Aligned_cols=330 Identities=15% Similarity=0.094 Sum_probs=226.7
Q ss_pred HHHHHHHHHhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhc
Q 013253 42 YLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH 120 (447)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~ 120 (447)
++...++..++.....+.+|...+|++.++.++|++.+...+...+.+++.|+++||+||||++..+..+.+++. +..+
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 83 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF 83 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence 445556666677777888888889999999999999999888888999999999999999999999988887754 4455
Q ss_pred Cc-----hhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 013253 121 SP-----QYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSL 195 (447)
Q Consensus 121 ~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~ 195 (447)
.+ +++.+++.|+++|++.+...+...+ ++.|..+++++.... .....+..+|..+++.+++.+.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~g~~l~~~l~~~~-- 155 (365)
T TIGR00900 84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQA-MLPDLVPEEQLTQAN-----SLSQAVRSLFYIVGPGIGGLMYATL-- 155 (365)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 55 9999999999999999999888766 888873333322211 1222344566666667777766544
Q ss_pred CccchhhhHHHHHHHHHHHHHH-hccccCCCCCCc-h-hHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhccc
Q 013253 196 GPVAPFDAAACFLAIGMVIILS-SWTENYGDPSES-K-DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTP 272 (447)
Q Consensus 196 ~~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (447)
+|+..|+..++..++..+.... +.||++++++++ + +..++..+..++.+|+|.++.......+...........+.|
T Consensus 156 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (365)
T TIGR00900 156 GIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFP 235 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4566677665555444333332 233332212111 1 222334455667788888877766655555554443336788
Q ss_pred ccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccc
Q 013253 273 ALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISF 349 (447)
Q Consensus 273 ~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (447)
.+.++..+.+. +.......++.+++.++.+++.||.+||+. +..+....++...........
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------------- 300 (365)
T TIGR00900 236 YVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMAL--MTGAIFVIGLAILVVGLTPPN------------- 300 (365)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH--HHHHHHHHHHHHHHHHhhchh-------------
Confidence 88776555554 667777788899999999999999988762 333333333333332221110
Q ss_pred chhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 350 SGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 350 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
.+...+..++.+++.+...+...++..|..|++.|+++.|+.+..
T Consensus 301 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 345 (365)
T TIGR00900 301 -FPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSL 345 (365)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 135567788889999988899999999999999999999987764
No 26
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.96 E-value=2.3e-26 Score=220.28 Aligned_cols=355 Identities=18% Similarity=0.155 Sum_probs=218.0
Q ss_pred HHHHHHHHHhhhhhcchhHhHhHhhcCCCCcc-----hhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH
Q 013253 42 YLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGE-----IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC 116 (447)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~-----~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~ 116 (447)
.....++...+.....|++|.+.+++|.+..+ .|.+.+...+...+.+++.|+++||+|||+.+..+..+.+++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 98 (408)
T PRK09874 19 AWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVM 98 (408)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHH
Confidence 33444555556666789999999999998765 3777888888888999999999999999999999988888876
Q ss_pred -HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhc---ccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 013253 117 -ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHN---KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS 192 (447)
Q Consensus 117 -l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~ 192 (447)
+..+.++++.+++.|++.|++.+. .+.... ++.|.. +|++..+ ....+..+|..+++.+++.+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~l~~~ 168 (408)
T PRK09874 99 VLMGLAQNIWQFLILRALLGLLGGF-VPNANA-LIATQVPRNKSGWALG--------TLSTGGVSGALLGPLAGGLLADS 168 (408)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhhh-HHhHHH-HHHHhcCHhhhhHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999998654 455544 555552 3333322 22233445666666777766654
Q ss_pred cccCccchhhhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhccc
Q 013253 193 FSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTP 272 (447)
Q Consensus 193 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (447)
. +|+..|.+.+.+.++..+......+|++++.+++++ ++. ++..+..++++.+.......+...........+.|
T Consensus 169 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (408)
T PRK09874 169 Y--GLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEM--LHM-REVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILT 243 (408)
T ss_pred h--CHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhh--hHH-HHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 566777777666655554444444543322111111 111 12234456666554332222222122222344455
Q ss_pred ccccccCC-CCc-----hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCc
Q 013253 273 ALSPNDEE-IPH-----GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGG 346 (447)
Q Consensus 273 ~~~~~~~~-~~~-----~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (447)
.|..+..+ .+. +.......++.+++.+..|++.||++||+. +..+.....+...........
T Consensus 244 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~--~~~~~~~~~~~~~~~~~~~~~---------- 311 (408)
T PRK09874 244 LYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKI--LITALIFSVLLLIPMSFVQTP---------- 311 (408)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHHHhccH----------
Confidence 55543222 111 334445567788888999999999998873 333333333222221111111
Q ss_pred cccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh------hhHHHHHHHHhhcccchHHHHHHHH
Q 013253 347 ISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMFGMCS 420 (447)
Q Consensus 347 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~ 420 (447)
+...+...+.|++.+...|...+...+..|++.+++.+++.+.. .++.+++.+.+.. ++...+...+
T Consensus 312 -----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~--g~~~~f~~~~ 384 (408)
T PRK09874 312 -----LQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY--GFRAVFLVTA 384 (408)
T ss_pred -----HHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc--chhHHHHHHH
Confidence 34556667788888888899999999999999999998876553 3345555555543 3445555555
Q ss_pred HHHHHHHHHh
Q 013253 421 IFLLVASVLQ 430 (447)
Q Consensus 421 ~~~~~~~~~~ 430 (447)
++.++..+..
T Consensus 385 ~~~l~~~~~~ 394 (408)
T PRK09874 385 GVVLFNAVYS 394 (408)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 27
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.96 E-value=7.4e-27 Score=224.85 Aligned_cols=343 Identities=16% Similarity=0.114 Sum_probs=211.8
Q ss_pred hhhHHHHHHHHHHHhhhhhc----chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHH
Q 013253 37 SFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTY 112 (447)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~----~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~ 112 (447)
++++..+..+.+..+.++++ .+.+|.+.+|+|+|+.+.+.+.+...+...+++++.|+++||+|||+++..+.++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~ 93 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 45565555656666655555 77778888999999999999888888888888999999999999999999999999
Q ss_pred HHHH-HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 013253 113 ILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL 188 (447)
Q Consensus 113 ~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~ 188 (447)
+++. +.+++++++.+++.|+++|++.+...+.... ++.|. ++|++..+ ....+..+|..+++.+.+.
T Consensus 94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~-~~~~~~~~~~r~~~~~--------~~~~~~~lg~~~~~~l~~~ 164 (426)
T PRK12307 94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACAST-YAVESWPKHLKSKASA--------FLVSGFGIGNIIAAYFMPS 164 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHhCCHhHhhHhhh--------HHHHHHhHHHHHHHHHHHH
Confidence 9876 6688999999999999999999988888755 77776 33444333 2233455666677666666
Q ss_pred hhcccccCccchhhhHHHHHHHHHHHHHHhccccCCCCC----Cc----hhHHHHHHHHHHHHhcchhHHHHHHHHHh--
Q 013253 189 LVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPS----ES----KDLLTQFRGAAVAIASDEKIALLGAIQSL-- 258 (447)
Q Consensus 189 l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 258 (447)
+.+. ++||..|++.....++.. ......||+++.++ ++ ++..+......++++++++++........
T Consensus 165 l~~~--~~w~~~f~i~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (426)
T PRK12307 165 FAEA--YGWRAAFFVGLLPVLLVI-YIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLF 241 (426)
T ss_pred Hccc--CCHHHHHHHHHHHHHHHH-HHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHH
Confidence 6544 456677766443333222 22223344321100 00 00001111245566777766543322211
Q ss_pred hhhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhh
Q 013253 259 FEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSF 335 (447)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 335 (447)
...........+.|.|.++. +.+. +...+...++.++++++.+++.||++||+. ...+.....+..........
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~--~~~~~~~~~~~~~~~~~~~~ 318 (426)
T PRK12307 242 SIFGANWPIFGLLPTYLAGE-GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKT--FSIGLLMSFLFIFPLFRIPQ 318 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHHHHHHHHcc
Confidence 11111112356778777653 4443 556677778899999999999999998873 33333333222222111111
Q ss_pred ccCCCCCCCCccccchhhHHHHHHHHHhh--hccchhHHHHHHhhcCChhhhccccchhhhh------hhHHHHHHHHhh
Q 013253 336 LVAPSNVKSGGISFSGSLQLLGFCTFEAC--VGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNV 407 (447)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~ 407 (447)
. .......++++.+ .....+..+.++.|.+|++.|++++|+.+.. .++.+.+.+.+.
T Consensus 319 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~ 383 (426)
T PRK12307 319 D---------------NYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT 383 (426)
T ss_pred c---------------cHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc
Confidence 1 0112222333332 2223456677889999999999999876553 233444455554
Q ss_pred cc
Q 013253 408 DA 409 (447)
Q Consensus 408 ~~ 409 (447)
.+
T Consensus 384 ~g 385 (426)
T PRK12307 384 MG 385 (426)
T ss_pred cc
Confidence 33
No 28
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.96 E-value=2.5e-26 Score=217.56 Aligned_cols=334 Identities=13% Similarity=0.090 Sum_probs=210.0
Q ss_pred HHHHHHHHHhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhc
Q 013253 42 YLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH 120 (447)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~ 120 (447)
+....++.........|.+|.+.+|+|.|.++.|++.+...+...+++++.|+++||+|||+++..+..+.+++. ++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~ 87 (382)
T PRK10091 8 LALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTL 87 (382)
T ss_pred HHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555566889999999999999999999888888888999999999999999999999999999876 6789
Q ss_pred CchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccch
Q 013253 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAP 200 (447)
Q Consensus 121 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~ 200 (447)
++|++.+++.|+++|++.+...+.... ++.|+.+++++..... ....+..++..+++.+++.+.+. ++||..
T Consensus 88 ~~~~~~l~~~r~l~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~g~~l~~~l~~~--~gwr~~ 159 (382)
T PRK10091 88 SSSYLMLAIGRLVSGFPHGAFFGVGAI-VLSKIIKPGKVTAAVA-----GMVSGMTVANLLGIPLGTYLSQE--FSWRYT 159 (382)
T ss_pred hCcHHHHHHHHHHHHhhhHHHHHHHHH-HHHHhCChHHhhHHHH-----HHHHHHHHHHHHhccHHHHHhhh--ccHHHH
Confidence 999999999999999999988776644 6777643333322111 22345667777777777777653 466778
Q ss_pred hhhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCC
Q 013253 201 FDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE 280 (447)
Q Consensus 201 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (447)
|.+.+++.++..+......||.++++++ +. ++.. +.+|+++.+.......+.....+. ...+.+.+.++..+
T Consensus 160 f~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g 231 (382)
T PRK10091 160 FLLIAVFNIAVLASIYFWVPDIRDEAKG--GL----REQF-HFLRSPAPWLIFAATMFGNAGVFA-WFSYIKPYMMFISG 231 (382)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCccccc--CH----HHHH-HHhcChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcC
Confidence 8887776665554444456664322211 11 1112 345666666554433333333222 23455556655455
Q ss_pred CCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHH
Q 013253 281 IPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLG 357 (447)
Q Consensus 281 ~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (447)
.+. +...+...++.++++++.+++.||+++|+. +.....+..+........... .+...+.
T Consensus 232 ~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~--~~~~~~~~~i~~~~~~~~~~~--------------~~~~~~~ 295 (382)
T PRK10091 232 FSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRI--AAVTDFIIVLALLMLFFFGGM--------------KTASLIF 295 (382)
T ss_pred CCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhH--HHHHHHHHHHHHHHHHHHHhh--------------HHHHHHH
Confidence 554 666778888999999999999999998873 444444433333322221111 0123333
Q ss_pred HHHHHhhhccchh-HHHHHHhhcCChhhhccccch--hhh--hhhHHHHHHHHhh
Q 013253 358 FCTFEACVGIFWP-SIMKMRSQYIPEEARSTIMNF--FRI--PLNIFVCVVLYNV 407 (447)
Q Consensus 358 ~~l~g~~~~~~~~-~~~~~~~~~~p~~~r~~~~g~--~~~--~~~~~~~~~l~~~ 407 (447)
.++.+.+.....+ .......+..|++.++.+.+. .+. ..++..++.+.+.
T Consensus 296 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Gp~~~G~l~~~ 350 (382)
T PRK10091 296 AFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAIGAYCGGMMLTL 350 (382)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHhHHHHHc
Confidence 4444454443333 333455555666666654321 111 2445555666654
No 29
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.96 E-value=1.4e-26 Score=219.36 Aligned_cols=330 Identities=14% Similarity=0.134 Sum_probs=211.9
Q ss_pred hhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHH
Q 013253 52 GDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIG 130 (447)
Q Consensus 52 ~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~ 130 (447)
+..+..|.+|.+.+++|+|+.+.+++.+...+...+++++.|+++||+|||+.+..+.++.+++. ++.++++++.+++.
T Consensus 6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (377)
T PRK11102 6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM 85 (377)
T ss_pred HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 34444789999999999999999999888888888889999999999999999999999998876 66888999999999
Q ss_pred HHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHH
Q 013253 131 RILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI 210 (447)
Q Consensus 131 r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~ 210 (447)
|++.|++.+...+...+ ++.|..+++.+..... ....+..+|..+++.+++.+.+. ++|+..|.+.+.+.++
T Consensus 86 ~~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~ 157 (377)
T PRK11102 86 RFLHGLAAAAASVVINA-LMRDMFPKEEFSRMMS-----FVTLVMTIAPLLAPIIGGWLLVW--FSWHAIFWVLALAAIL 157 (377)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhcCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH--cChHHHHHHHHHHHHH
Confidence 99999999988887755 7777633222222111 12223446666667777766653 4567778777666666
Q ss_pred HHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHH
Q 013253 211 GMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIF 287 (447)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 287 (447)
..+......||+++++++++...++..+..++.+++|+.+...+...+.....+. ...+.|.+..+..+.+. +...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~ 236 (377)
T PRK11102 158 AAALVFFFIPETLPKERRQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFS-FLTAGPFVYIELNGVSPQNFGYYF 236 (377)
T ss_pred HHHHHHHhCCccCcccccCCCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH-HHHcCHHHHHHHhCCCHHHHHHHH
Confidence 5555544556644332222212222234455678888877666555444444333 35566766655555554 6677
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhcc
Q 013253 288 ATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGI 367 (447)
Q Consensus 288 ~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 367 (447)
....++.++++++.+++.||+|+|+. +..+.....+........... + . ..+...+...+...+.+.
T Consensus 237 ~~~~~~~~~~~~~~g~l~~r~g~~~~--~~~~~~~~~~~~~~~~~~~~~-~------~----~~~~~~~~~~~~~~~~~~ 303 (377)
T PRK11102 237 ALNIVFLFVMTIINSRFVRRVGALNM--LRFGLWIQFIMGIWLVVSALL-D------L----GFWALVVGVAAFVGCVSM 303 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHHHHHHHHHHHHHHHHHH-h------h----hHHHHHHHHHHHHHHHHH
Confidence 77788899999999999999998873 333333222211111111111 0 0 012233334444444555
Q ss_pred chhHHHHHHhhcCChhhhccccchhhhh---hhHHHHHHH
Q 013253 368 FWPSIMKMRSQYIPEEARSTIMNFFRIP---LNIFVCVVL 404 (447)
Q Consensus 368 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~---~~~~~~~~l 404 (447)
..+.......|..| +.++++.++.+.. .+..++..+
T Consensus 304 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 304 ISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred hhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 55556667778776 6788887776542 334444444
No 30
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.96 E-value=1.4e-26 Score=226.10 Aligned_cols=330 Identities=15% Similarity=0.033 Sum_probs=224.9
Q ss_pred HHHHHHHHHHHhhhhhc----chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHH
Q 013253 40 NNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILS 115 (447)
Q Consensus 40 ~~~~~~~~~~~~~~~~~----~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~ 115 (447)
|..+....+..+...+| ...+|.+.+|+|.+..+.+++.+...+......++.|+++||+|||+++..+..++.++
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~ 84 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLA 84 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44444445555544444 67789999999999999999988877777778889999999999999999999999997
Q ss_pred H-HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHH-hhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 013253 116 C-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLV-AEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLV 190 (447)
Q Consensus 116 ~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i-~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~ 190 (447)
. ++++++|++.++++|+++|++.+...+.... .+ .+. ++|++..+ .......+|..++|.+++.+.
T Consensus 85 ~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~-~l~~~~~~~~~r~~~~g--------~~~~~~~~g~~~gp~lgg~l~ 155 (495)
T PRK14995 85 SLAAAFSPTASWLIATRALLAIGAAMIVPATLA-GIRATFTEEKQRNMALG--------VWAAVGSGGAAFGPLVGGILL 155 (495)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhh
Confidence 6 7799999999999999999999998887655 44 332 23333332 223345577778888888887
Q ss_pred cccccCccchhhhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHH----------------------------------
Q 013253 191 DSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQF---------------------------------- 236 (447)
Q Consensus 191 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 236 (447)
+.. +||+.|++...+.++..++.....|+++++++++.+.....
T Consensus 156 ~~~--gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (495)
T PRK14995 156 EHF--YWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGA 233 (495)
T ss_pred ccC--ChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 655 45667887776666665555555565433322221110000
Q ss_pred -------HHH--------HHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHHHHHH
Q 013253 237 -------RGA--------AVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGS 298 (447)
Q Consensus 237 -------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~ 298 (447)
... ..+++|+|.+........+.....+. ...+.|.|+++..+.++ |.......++..++.
T Consensus 234 ~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~ 312 (495)
T PRK14995 234 LLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVG-FELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSG 312 (495)
T ss_pred HHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 000 01345666655544444444444343 46678888887777765 777777888999999
Q ss_pred HHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhh
Q 013253 299 SLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQ 378 (447)
Q Consensus 299 ~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 378 (447)
++.|++.||+|+|+ .+..+..+..+........... ++ .+......++.|++.+...+.....+.+
T Consensus 313 ~~~g~l~~r~g~~~--~~~~g~~~~~~~~~~l~~~~~~--------~~----~~~~~~~~~l~G~g~g~~~~~~~~~~~~ 378 (495)
T PRK14995 313 PIAGILVSRLGLRL--VATGGMALSALSFYGLAMTDFS--------TQ----QWQAWGLMALLGFSAASALLASTSAIMA 378 (495)
T ss_pred HHHHHHHHHcCchH--HHHHHHHHHHHHHHHHHHhcCC--------Cc----hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 99999999999876 2444444443333332222111 00 1234556788899999888888999999
Q ss_pred cCChhhhccccchhhhh
Q 013253 379 YIPEEARSTIMNFFRIP 395 (447)
Q Consensus 379 ~~p~~~r~~~~g~~~~~ 395 (447)
..|+++++.+.++.++.
T Consensus 379 ~~~~~~~g~~~~~~~~~ 395 (495)
T PRK14995 379 AAPPEKAAAAGAIETMA 395 (495)
T ss_pred cCCHHhcchHHHHHHHH
Confidence 99999999998887763
No 31
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.96 E-value=9.1e-27 Score=225.23 Aligned_cols=334 Identities=10% Similarity=0.065 Sum_probs=197.9
Q ss_pred chhhHHHHHHHHHHHhhhhhc----chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHH
Q 013253 36 NSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT 111 (447)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~----~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~ 111 (447)
++.+|..+..+++.......+ .+.+|.+.++ |+|+.+.|+..+...+...+++++.|+++||+|||+++..+.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~ 102 (452)
T PRK11273 24 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 102 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHH
Confidence 344455555555554444443 4566777777 99999999998988888889999999999999999999999998
Q ss_pred HHHHH-HHhcC----chhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHH-HHh
Q 013253 112 YILSC-ITKHS----PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVA-ILS 182 (447)
Q Consensus 112 ~~i~~-l~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~-~~~ 182 (447)
.+++. +.++. ++++.+++.|++.|++.+...+.... .+.|+ ++|++..+. .. .+..+|. ..+
T Consensus 103 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~-~~~~~~~~~~r~~~~~~----~~----~~~~~g~~~~~ 173 (452)
T PRK11273 103 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGR-TMVHWWSQKERGGIVSV----WN----CAHNVGGGLPP 173 (452)
T ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHH-HHHHhCChHHHHHHHHH----HH----HHHHhhhhHHH
Confidence 88865 44543 47888999999999999988776655 56665 334443332 22 2233332 223
Q ss_pred hhhhhhhhcccccCccchhhhHHHHHHHHHHHHHHhccccCCC---CCCc------------h-hHHHHHHHH-HHHHhc
Q 013253 183 GLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGD---PSES------------K-DLLTQFRGA-AVAIAS 245 (447)
Q Consensus 183 ~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------------~-~~~~~~~~~-~~~~~~ 245 (447)
+.++..+.... +||..|++.+++.++..++.....||++++ ++++ + +..++.++. .+.++|
T Consensus 174 ~l~~~~~~~~~--gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (452)
T PRK11273 174 LLFLLGMAWFN--DWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLP 251 (452)
T ss_pred HHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHc
Confidence 33222221112 567778877666555444444344443221 0000 0 000011111 224677
Q ss_pred chhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchh-HHHHHHH
Q 013253 246 DEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVES-YMQIVFV 321 (447)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~-~l~~~~~ 321 (447)
++.+|...+...+.....+. ...|.|.|+++..+.+. +.......++.+++.++.|+++||+++++.. .......
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~-~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~ 330 (452)
T PRK11273 252 NKLLWYIAIANVFVYLLRYG-ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMT 330 (452)
T ss_pred ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 88888877666666655554 57799999987666554 5556667788889999999999998432211 1111112
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 322 VSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+..+..... ..... .+ .+...+.....+.......+....+..|.+|++.|+++.|+.+..
T Consensus 331 l~~~~~~~~-~~~~~--------~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 391 (452)
T PRK11273 331 LVTIATIVY-WLNPA--------GN----PTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF 391 (452)
T ss_pred HHHHHHHHH-HHhcc--------cC----hHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHH
Confidence 212221111 11111 00 012223333334333222333455678999999999999987653
No 32
>PRK12382 putative transporter; Provisional
Probab=99.96 E-value=5.5e-26 Score=216.25 Aligned_cols=351 Identities=17% Similarity=0.142 Sum_probs=211.2
Q ss_pred cccchhhHHHHHHHHHHHhhhhhcchhHhH-hHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHH
Q 013253 33 SAFNSFKNNYLLVYSLMMAGDWLQGPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT 111 (447)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~ 111 (447)
++.++..+......++..+..++..|.+|. +.+|+|.|+.++|.+.+...+...+.++++|+++||+||||++..+.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~ 90 (392)
T PRK12382 11 SSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLA 90 (392)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHH
Confidence 333333444444455555566676888885 5689999999999999999998999999999999999999999998887
Q ss_pred HHHHH----HHhc-----CchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHH
Q 013253 112 YILSC----ITKH-----SPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVA 179 (447)
Q Consensus 112 ~~i~~----l~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~ 179 (447)
..++. +.+. .++++.+++.|+++|++.+...+...+ ++.|. ++|++..+..+ .+...|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~-~~~~~~~~~~r~~a~~~~~--------~~~~~g~ 161 (392)
T PRK12382 91 CGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALT-WGLGLVGPKHSGKVMSWNG--------MAMYGAL 161 (392)
T ss_pred HHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCccccchhhhHHH--------HHHHHHH
Confidence 76542 1222 357889999999999999988777655 65555 44555444322 2344555
Q ss_pred HHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhh
Q 013253 180 ILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLF 259 (447)
Q Consensus 180 ~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (447)
.+++.+++.+.+.. +|+..+.+.....++... .....||+++++++++ +.++..+..++ +... ..+.
T Consensus 162 ~~g~~~~~~l~~~~--g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~-----~~l~ 228 (392)
T PRK12382 162 AAGAPLGLLLHSHF--GFAALALTTMVLPLLAWA-FNGTVRKVPAHAGERP----SLWSVVGLIWK-PGLG-----LALQ 228 (392)
T ss_pred HHHHHHHHHHHhcc--ChHHHHHHHHHHHHHHHH-HHHhccCCCCCcccCc----hHHHHHHHHHH-hHHH-----HHHH
Confidence 66666666665444 455555444333332222 2223343322211111 11111222211 1111 1111
Q ss_pred hhhhhhhhhhcccccccccCCCCc-hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccC
Q 013253 260 EGSMYTFVFLWTPALSPNDEEIPH-GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVA 338 (447)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 338 (447)
... +.....+.|.+.++. +.+. +.......++.+++++..+++.||+|+|+. +..+..+..+...........
T Consensus 229 ~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~--~~~~~~~~~~~~~~~~~~~~~-- 302 (392)
T PRK12382 229 GVG-FAVIGTFVSLYFASK-GWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKV--AIVSLLVETVGLLLLWLAPTA-- 302 (392)
T ss_pred HHH-HhHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCee--hHHHHHHHHHHHHHHHHcccH--
Confidence 111 222344556665442 3333 555566677788999999999999998874 444444444433332221111
Q ss_pred CCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh------hhHHHHHHHHhhcccch
Q 013253 339 PSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPI 412 (447)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~ 412 (447)
+.......+.+++.+...|...+...|..|+++|+++.|+.+.. .+..+.+.+.+..+ +
T Consensus 303 -------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g--~ 367 (392)
T PRK12382 303 -------------WVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG--Y 367 (392)
T ss_pred -------------HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--c
Confidence 24455677778888877888888999999999999999987764 23344455555533 4
Q ss_pred HHHHHHHHHHHHHH
Q 013253 413 TVMFGMCSIFLLVA 426 (447)
Q Consensus 413 ~~~~~~~~~~~~~~ 426 (447)
...+...+...++.
T Consensus 368 ~~~~~~~~~~~~~~ 381 (392)
T PRK12382 368 PSVFLAGAISAVLG 381 (392)
T ss_pred hHHHHHHHHHHHHH
Confidence 44444444433333
No 33
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.96 E-value=5.7e-26 Score=215.78 Aligned_cols=321 Identities=14% Similarity=0.083 Sum_probs=218.0
Q ss_pred hhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHH
Q 013253 51 AGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMI 129 (447)
Q Consensus 51 ~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~ 129 (447)
.+.....|.+|.+.+|+|.|+.+.+++.+.......+++++.|+++||+|||+.+..+.++.+++. +..++++++.+++
T Consensus 19 ~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (385)
T TIGR00710 19 LGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLV 98 (385)
T ss_pred HHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 344555888999999999999999999888888888889999999999999999999999888876 6688899999999
Q ss_pred HHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHH
Q 013253 130 GRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA 209 (447)
Q Consensus 130 ~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~ 209 (447)
.|++.|++.+...+...+ ++.|..+++++..... .......+|..+++.+++.+.+. ++|+..|...+...+
T Consensus 99 ~~~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~g~~~~~~l~~~--~~~~~~~~~~~~~~~ 170 (385)
T TIGR00710 99 LRFVQAFGASAGSVISQA-LVRDIYPGEELSRIYS-----ILMPVLALAPAVAPLLGGYILVW--LSWHAIFAFLSLAGI 170 (385)
T ss_pred HHHHHHcchhHHHHHHHH-HHHHhcCcHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHH
Confidence 999999999999888766 7888733333222111 12223445566666666666644 456777777666666
Q ss_pred HHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHH
Q 013253 210 IGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFI 286 (447)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 286 (447)
+.........||+++++++. ..++..+..++.+|+|+++...+...+.....+. ...+.|.+.++..+.++ +..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~ 247 (385)
T TIGR00710 171 LLSALIFFILPETLPYEARI--QISTYFETFLLLLKSKMFWGYALIYGASFGGFFA-FFSGAPFVYIDIMGVSPSVFGLL 247 (385)
T ss_pred HHHHHHHHhCCCCCCCcccC--CHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH-HHHcChHHHHHHcCCCHHHHHHH
Confidence 55555444556554333221 1122234556778888888776665554444443 46677877766666655 566
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhc
Q 013253 287 FATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVG 366 (447)
Q Consensus 287 ~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 366 (447)
.....++.++++++.+++.||+++|+. +..+.....+............. ...+.......+.+++.+
T Consensus 248 ~~~~~~~~~~~~~~~g~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~g~~~~ 315 (385)
T TIGR00710 248 FALNIIAMIFGGFLNGRFIKKWGAKSL--LRMGLILFAVSAVLLEITAILGL----------GSWAMIIGPMMFVGIGNS 315 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHHHHHHHHHHHhcc----------chHHHHHHHHHHHHHHHH
Confidence 677778899999999999999998773 33333333333322222111100 001233445666778888
Q ss_pred cchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 367 IFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 367 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
...+.......|..| +.++++.++.+..
T Consensus 316 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~ 343 (385)
T TIGR00710 316 MISSIAMAYALEDFP-HVAGTASALFGTL 343 (385)
T ss_pred HHHHHHHHHHhccCc-ccchHHHHHHHHH
Confidence 888888888888887 4688888876653
No 34
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.96 E-value=1e-25 Score=214.90 Aligned_cols=320 Identities=15% Similarity=0.136 Sum_probs=202.6
Q ss_pred hhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHH
Q 013253 52 GDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIG 130 (447)
Q Consensus 52 ~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~ 130 (447)
...+..|.+|.+.+++|.+.++.++..+..++...+++++.|+++||+|||+++..+..+++++. ++.+++|++.+++.
T Consensus 31 ~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~ 110 (413)
T PRK15403 31 TTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIA 110 (413)
T ss_pred HHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34444899999999999999999988888888888889999999999999999999999998876 66889999999999
Q ss_pred HHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHH
Q 013253 131 RILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI 210 (447)
Q Consensus 131 r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~ 210 (447)
|+++|++.+...+.. ..++.|..++.++..... ....+..+++.++|.+++.+.+. ++||..|++.+++.++
T Consensus 111 r~l~Gi~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~lg~~l~~~--~gw~~~f~~~~~~~~i 182 (413)
T PRK15403 111 RFIQGTSICFIATVG-YVTVQEAFGQTKGIKLMA-----IITSIVLVAPIIGPLSGAALMHF--VHWKVLFAIIAVMGLI 182 (413)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHhcCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHH
Confidence 999999988655544 335666633322222111 12223446666677777766643 4677888887777666
Q ss_pred HHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHH
Q 013253 211 GMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIF 287 (447)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 287 (447)
..+...+..||++++++++. ..++..++.++++|||+++...+...+.....+. ...+.|.+.++..+.+. +...
T Consensus 183 ~~~~~~~~lp~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~-~~~~~P~~l~~~~g~s~~~~gl~~ 260 (413)
T PRK15403 183 AFVGLLLAMPETVKRGAVPF-SAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMS-WVAVSPVILIDAGGMTTSQFAWTQ 260 (413)
T ss_pred HHHHHHHhCCCCccccCCCC-ChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHhChHHHHHhcCCCHHHHHHHH
Confidence 65555555677544322211 1223344667888999999877666655555444 46678988887777766 4444
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhcc
Q 013253 288 ATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGI 367 (447)
Q Consensus 288 ~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 367 (447)
.....+..++..+.+++.+|..+++. ......+..++..+....... .+ +. .+......++.+++.+.
T Consensus 261 ~~~~~~~~i~~~l~~~~~~~~~~~~~--~~~~~~~~~ig~~l~~~~~~~-~~-----~~----~~~~~~~~~l~~~G~~~ 328 (413)
T PRK15403 261 VPVFGAVIVANAIVARFVKDPTEPRF--IWRAVPIQLVGLALLIVGNLL-WP-----HV----WLWSVLGTSLYAFGIGL 328 (413)
T ss_pred HHHHHHHHHHHHHHHHHhccCCchhH--HHHHHHHHHHHHHHHHHHHHH-cc-----cc----HHHHHHHHHHHHHHHHH
Confidence 45556777777777776655443331 211111111111111111000 00 00 11245677778888888
Q ss_pred chhHHHHHHhhcCChhhhccccchhhh
Q 013253 368 FWPSIMKMRSQYIPEEARSTIMNFFRI 394 (447)
Q Consensus 368 ~~~~~~~~~~~~~p~~~r~~~~g~~~~ 394 (447)
..|......-+..+ ..+|++.++.+.
T Consensus 329 ~~p~~~~~al~~~~-~~~G~a~a~~~~ 354 (413)
T PRK15403 329 IFPTLFRFTLFSNN-LPKGTVSASLNM 354 (413)
T ss_pred HhHHHHHHHhccCC-CCCcHHHHHHHH
Confidence 87777754332211 125666655544
No 35
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.96 E-value=1e-25 Score=213.68 Aligned_cols=366 Identities=14% Similarity=0.036 Sum_probs=223.0
Q ss_pred HHHHHHHHHHHhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HH
Q 013253 40 NNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT 118 (447)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~ 118 (447)
+.+....++..+++......++.+.+|++.++.+.+++.+...+...+.++++|+++||+||||+++.+..+.+++. ++
T Consensus 6 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~ 85 (393)
T PRK11195 6 YAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLM 85 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHH
Confidence 44555556666666666555566778999999999999888888888999999999999999999999999998865 44
Q ss_pred hcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCcc
Q 013253 119 KHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPV 198 (447)
Q Consensus 119 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~ 198 (447)
.++++. ++.|+++|++.+...|...+ ++.|..+++++....+. ......++..++|.+++.+.+. .|+
T Consensus 86 ~~~~~~---~~~r~l~G~~~a~~~pa~~a-~i~~~~~~~~~~~a~~~-----~~~~~~~~~~~Gp~lgG~l~~~---~~~ 153 (393)
T PRK11195 86 LFGIHP---LLAYGLVGIGAAAYSPAKYG-ILTELLPGEKLVKANGW-----MEGSTIAAILLGTVLGGALADP---HAE 153 (393)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHcCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 555553 77899999999999999866 88887433333332221 2223446666667777776642 355
Q ss_pred chhhhHHHHHHHHHHHHHHhccccCCCCCCc----hhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhccccc
Q 013253 199 APFDAAACFLAIGMVIILSSWTENYGDPSES----KDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPAL 274 (447)
Q Consensus 199 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (447)
..+.+.....++..+ .....||++.++++. .+..++..+..+.++++|..........+....... .....|.+
T Consensus 154 ~~~~i~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 231 (393)
T PRK11195 154 AALAVCALIYLLAAL-FNLFIPRLGARRPGQSWNPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGAT-LRFLVLAW 231 (393)
T ss_pred HHHHHHHHHHHHHHH-HHhcCCCCcccccccCCCHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 666555444333322 223455543222111 111233334456677777765443333333222222 23344555
Q ss_pred ccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccch
Q 013253 275 SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSG 351 (447)
Q Consensus 275 ~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (447)
.++.++.++ |.......++.+++++..+++.||.++++. +..+. ..+......... .. .
T Consensus 232 ~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~--~~~g~-~~~~~~~~~~~~-~~--------------~ 293 (393)
T PRK11195 232 APVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRV--LPAGI-LMGLVVLLMALQ-HS--------------L 293 (393)
T ss_pred HHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccch--HHHHH-HHHHHHHHHHHH-hH--------------H
Confidence 555556554 777788889999999999999999887762 33332 222222221111 11 1
Q ss_pred hhHHHHHHHHHhhhccchhHHHHHHhhcCChhh-hccccchhhhhhhH------HHHHHHHhhcccchHHHHHHHHHHHH
Q 013253 352 SLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA-RSTIMNFFRIPLNI------FVCVVLYNVDAFPITVMFGMCSIFLL 424 (447)
Q Consensus 352 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~-r~~~~g~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~ 424 (447)
+.......+.|++.+...+..++..+|..|++. +|++.++.++..+. .+.+.+ +..+......+..++....
T Consensus 294 ~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 372 (393)
T PRK11195 294 LPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVA 372 (393)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHH
Confidence 234556667888888878878888888866665 78888777764322 222222 3334445555555555544
Q ss_pred HHHHHhhhhhhhhc
Q 013253 425 VASVLQRRLMVIAD 438 (447)
Q Consensus 425 ~~~~~~~~~~~~~~ 438 (447)
.......+..++.+
T Consensus 373 ~~~~~~~~~~~~~~ 386 (393)
T PRK11195 373 LAMALLWRWHRRNQ 386 (393)
T ss_pred HHHHHHHHHHHhcc
Confidence 44433333333333
No 36
>PRK03699 putative transporter; Provisional
Probab=99.96 E-value=5.4e-26 Score=216.16 Aligned_cols=320 Identities=12% Similarity=0.061 Sum_probs=200.2
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G 135 (447)
++.+|++.+++|+|+++.+.+.+...+...+++++.|++.||+|||+++..+..+.+++. +.+++++++.+++.|+++|
T Consensus 27 g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G 106 (394)
T PRK03699 27 GMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLG 106 (394)
T ss_pred hhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 788899999999999999998888888777888899999999999999999999888876 6688999999999999999
Q ss_pred hhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHH
Q 013253 136 IATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII 215 (447)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~ 215 (447)
++.+...+...+ ++.|..+++++..... ....+..++..++|.+.+.+.+ ..++||..|...+++.++..++.
T Consensus 107 ~~~g~~~~~~~~-~i~~~~~~~~r~~~~~-----~~~~~~~~g~~~~~~~~~~l~~-~~~gw~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK03699 107 VVSGITMSIGTF-LITHVYEGKQRGSRLL-----FTDSFFSMAGMIFPIIAAYLLA-RSIEWYWVYACIGLVYVAIFILT 179 (394)
T ss_pred HhhHhhccchhH-HhhhhcccchHHHHHH-----HHHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHH
Confidence 999988877655 6777633222222111 1112334555566666555443 23567788877666655444333
Q ss_pred HH-hccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHHH
Q 013253 216 LS-SWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFM 291 (447)
Q Consensus 216 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 291 (447)
.. ..|+.++++++ +. + +..++ ..+++++...+...+.....+. ...|.|.|.++.++.+. +...+...
T Consensus 180 ~~~~~p~~~~~~~~--~~-~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~g~s~~~~~~~~~~~~ 251 (394)
T PRK03699 180 LFSEFPALGKHAPK--AD-K---PVAKE-KWGIGVLFLAIAALLYILAQLT-FISWVPEYAQKKFGMSLEDAGNLVSNFW 251 (394)
T ss_pred HhcCCccccccCcc--cc-C---ccccc-cCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCChHHhhHHHHHHH
Confidence 32 22321111111 10 0 00111 1234555544444444444343 57899999977667665 66667777
Q ss_pred HHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhH
Q 013253 292 LASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPS 371 (447)
Q Consensus 292 i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 371 (447)
++..+++++.++++||+++|+. +.....+..+...... .... . +...+..++.|++.+..++.
T Consensus 252 ~~~~ig~~~~g~l~dr~~~~~~--l~~~~~~~~~~~~~~~-~~~~----------~----~~~~~~~~~~G~~~~~~~~~ 314 (394)
T PRK03699 252 MAYMVGMWIFSFIVRFFDLQRI--LTVLAGLALVLMYLFV-NTDD----------P----SHLLYAILGLGFFSSAIYTT 314 (394)
T ss_pred HHHHHHHHHHHHHHHHhchhhH--HHHHHHHHHHHHHHHH-HcCC----------c----hHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999998873 3333333222222211 1111 0 13344566677777777788
Q ss_pred HHHHHhhcCChhhhccccchhhhh------hhHHHHHHHHhhcc
Q 013253 372 IMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDA 409 (447)
Q Consensus 372 ~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~ 409 (447)
..+...|..|++ +++..|..... .++.+.+.+.+..+
T Consensus 315 ~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g 357 (394)
T PRK03699 315 IITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFG 357 (394)
T ss_pred HHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC
Confidence 888888877654 34444443332 33344455555434
No 37
>PRK10504 putative transporter; Provisional
Probab=99.95 E-value=5.3e-26 Score=221.65 Aligned_cols=321 Identities=13% Similarity=0.066 Sum_probs=211.1
Q ss_pred hhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHH
Q 013253 52 GDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIG 130 (447)
Q Consensus 52 ~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~ 130 (447)
......+.+|.+.+|+|.|+.+.+++.+...+...++.+++|+++||+|||+++..+..+.+++. ++.++++++.+++.
T Consensus 25 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (471)
T PRK10504 25 DTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLA 104 (471)
T ss_pred hHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 33444788899999999999999988877777667788899999999999999999988888875 56788999999999
Q ss_pred HHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHH
Q 013253 131 RILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI 210 (447)
Q Consensus 131 r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~ 210 (447)
|+++|++.+...+.... ++.|..+++++... .+ ....+..+|..++|.+++.+.+.. +||+.|........+
T Consensus 105 ~~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~-~~~~~~~~g~~~g~~~~g~l~~~~--gw~~~f~~~~~~~~l 176 (471)
T PRK10504 105 RVLQGVGGAMMVPVGRL-TVMKIVPREQYMAA----MT-FVTLPGQVGPLLGPALGGLLVEYA--SWHWIFLINIPVGII 176 (471)
T ss_pred HHHHHhhhHHHHHHHHH-HHHHHcCHHHHHHH----HH-HHHHHHHHHHHhhhHHHHHHHhhc--cHHHHHHHHHHHHHH
Confidence 99999999999888755 77776444433321 11 223344567777777777777654 556777776665555
Q ss_pred HHHHHHHhccccCCCCCCchhH------------------------H--------------------HHHH---H-HHHH
Q 013253 211 GMVIILSSWTENYGDPSESKDL------------------------L--------------------TQFR---G-AAVA 242 (447)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~------------------------~--------------------~~~~---~-~~~~ 242 (447)
..+......|+.+.++.+.+.. . ++.. + ...+
T Consensus 177 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (471)
T PRK10504 177 GAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLK 256 (471)
T ss_pred HHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHH
Confidence 5444443334322111110000 0 0000 0 0113
Q ss_pred HhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHH
Q 013253 243 IASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIV 319 (447)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~ 319 (447)
++|||++........+.... +.....+.|.|.++..+.++ +.......++.+++..+.+++.||+|+|+. +..+
T Consensus 257 l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~--~~~~ 333 (471)
T PRK10504 257 LFRTRTFSLGLAGSFAGRIG-SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRV--LVAT 333 (471)
T ss_pred HhcccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH--HHHH
Confidence 56777776655444444443 33346677888876666655 556666667788888999999999998873 4444
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 320 FVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
..+..+...+....... + ..+......++.|++.+...+..+.+..+..|++.++++.|+.++.
T Consensus 334 ~~~~~~~~~~~~~~~~~--------~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 397 (471)
T PRK10504 334 TLGLALVSLLFMLVALL--------G----WYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMI 397 (471)
T ss_pred HHHHHHHHHHHHhcccc--------c----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHH
Confidence 44343333332221111 0 0122334456667788888888899999999999999999887764
No 38
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.95 E-value=7.3e-26 Score=214.26 Aligned_cols=352 Identities=17% Similarity=0.138 Sum_probs=216.3
Q ss_pred HHHHHHHhhhhhcchhHhHh-HhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHH-HHHHHHHHH-HHhc
Q 013253 44 LVYSLMMAGDWLQGPYVYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVT-YCLTYILSC-ITKH 120 (447)
Q Consensus 44 ~~~~~~~~~~~~~~~~l~~i-~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~-~~~~~~i~~-l~~~ 120 (447)
...++..++.+...|.+|.. .+++|.|+.++|++.+...+.+.+.+++.|+++||+||||.++. +.....++. +.++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~ 83 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW 83 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence 34556666777778888864 57899999999999888888888999999999999999987665 444445554 6688
Q ss_pred CchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh-cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccc
Q 013253 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVA 199 (447)
Q Consensus 121 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~ 199 (447)
+++++.+++.|++.|.+.+...|...+ +..|. +++++.... .......+..+|..+++.+++.+.+. ++||.
T Consensus 84 ~~~~~~l~~~~~~~g~~~~~~~p~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~ig~~~~~~l~~~--~~~~~ 156 (375)
T TIGR00899 84 NRNYFLLLVLGVLLSSFASTANPQLFA-LAREHADRTGREAVM----FSSVMRAQISLAWVIGPPLAFWLALG--FGFTV 156 (375)
T ss_pred cchHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHhhhcchhhHH----HHHHHHHHHhHHHHHhhhHHHHHHHh--cccHH
Confidence 999999999999999887777777655 66665 333332111 11122234456677777777777654 45677
Q ss_pred hhhhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccC
Q 013253 200 PFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDE 279 (447)
Q Consensus 200 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (447)
.|++.+...++..+......||.+++++++++ +.+.++.+++++.+.......+.... ......+.|.+.++..
T Consensus 157 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 230 (375)
T TIGR00899 157 MFLTAALAFVLCGVLVWLFLPSYPRGAPGALT-----RLEVRGLLASRDTRLLFVACTLMWGC-NILYIINMPLLIIHEL 230 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCcccccC-----cchhhhhhcCcchHHHHHHHHHHHHH-HHHHHhhhHHHHHHHc
Confidence 88887776665555554445654332221111 11223345666665544333332222 2223456777776655
Q ss_pred CCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHH
Q 013253 280 EIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLL 356 (447)
Q Consensus 280 ~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (447)
+.+. +...........++.++.+++.||+|||+. +........+........... +....
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 293 (375)
T TIGR00899 231 GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRL--MLLAALAGVAFYTGLAADNSL---------------WALLM 293 (375)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHHHH---------------HHHHH
Confidence 6555 444455555677788999999999998873 333333222222221111111 23445
Q ss_pred HHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh------hhHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Q 013253 357 GFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMFGMCSIFLLVASV 428 (447)
Q Consensus 357 ~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 428 (447)
...+.+++.+...+....+.+|..|++ ++++.++.+.. .+..+++.+.+.. ++...+...++..++...
T Consensus 294 ~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~ 368 (375)
T TIGR00899 294 LQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERW--SYHAVYWFAIVMLIVALF 368 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHH
Confidence 566677777877788888999998875 55877776653 2233444444443 344444444444444333
No 39
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.95 E-value=2.1e-26 Score=222.35 Aligned_cols=338 Identities=9% Similarity=0.076 Sum_probs=215.3
Q ss_pred CCCcccchhhHHHHHHHHHHHhhhhhc----chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHH
Q 013253 30 NTSSAFNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRAC 105 (447)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l 105 (447)
+++++...++|.++..+++....+..+ +.++|.+.+++|.|.++.+++.+.......+++++.|+++||+|||+++
T Consensus 8 ~~~~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l 87 (455)
T TIGR00892 8 EGPPPDGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVV 87 (455)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHH
Confidence 344455666777776666555433222 5667889999999999999998888777788889999999999999999
Q ss_pred HHHHHHHHHHH-HHhcCchhHHHHH-HHHHHHhhhhhhhhhhhHHHHhhh--cccchhhhHHHHHHHHHHHHHHHHHHHH
Q 013253 106 VTYCLTYILSC-ITKHSPQYKILMI-GRILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAIL 181 (447)
Q Consensus 106 ~~~~~~~~i~~-l~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~ 181 (447)
+.+.++.+++. +++++++++.+++ .|+++|++.+...+.... ++.++ ++|++..+ ....+..+|..+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~-~~~~~~~~~r~~a~g--------~~~~~~~~g~~~ 158 (455)
T TIGR00892 88 IAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLT-MLGKYFYRRRPLANG--------LAMAGSPVFLST 158 (455)
T ss_pred HhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHH-HHHHHHHhhHHHHHH--------HHHhcccHHHHH
Confidence 99998888876 6688899998865 579999998876555544 56665 33333322 333345566667
Q ss_pred hhhhhhhhhcccccCccchhhhHHHHHHHHHHHHHHhccccCC----CCC-------Cch-hH------HHHHHHH-HHH
Q 013253 182 SGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYG----DPS-------ESK-DL------LTQFRGA-AVA 242 (447)
Q Consensus 182 ~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~----~~~-------~~~-~~------~~~~~~~-~~~ 242 (447)
++.+++.+.+. ++||..|++.+++.++..+......++.+. +++ +.. +. .++..+. ..+
T Consensus 159 ~~~l~~~l~~~--~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (455)
T TIGR00892 159 LAPLNQYLFES--FGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFS 236 (455)
T ss_pred HHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchH
Confidence 77777777654 456778888776655443333222221110 000 000 00 0011110 114
Q ss_pred HhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCC--CcchhHHH
Q 013253 243 IASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSP--PRVESYMQ 317 (447)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g--~~~~~~l~ 317 (447)
.+++|.++.......+.....+. ...+.|.|.++ .+.+. +...+..+++.+++++..+++.||.. +|+...+.
T Consensus 237 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 314 (455)
T TIGR00892 237 LFTHRGFLVYLSGNVIMFLGFFA-PIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFS 314 (455)
T ss_pred HhcCchHHHHHHHHHHHHHHccc-hHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHH
Confidence 66778877666555544444333 45677777754 35544 66777788889999999999999843 23211111
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 318 IVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
.+....++.......... .+...+..++.|++.+...+...+++.|.+|++++++++|+.+..
T Consensus 315 ~~~~~~~l~~ll~~~~~~---------------~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 377 (455)
T TIGR00892 315 FALLFNGLTHLLCALAGD---------------YTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIV 377 (455)
T ss_pred HHHHHHHHHHHHHHHhch---------------HHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHH
Confidence 122222222222111111 134566677888888888899999999999999999999988764
No 40
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.95 E-value=1.3e-25 Score=220.51 Aligned_cols=355 Identities=13% Similarity=0.072 Sum_probs=206.2
Q ss_pred cccchhhHHHHHHHHHHHhhhhhc----chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHH
Q 013253 33 SAFNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTY 108 (447)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~ 108 (447)
+..++.+|..+....+..+.+.++ .+.+|.+.+++|.|+.+.+++.+...+...+++++.|+++||+|||+.+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 91 (496)
T PRK03893 12 RHLNRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVIS 91 (496)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 333455565555555555544444 7778889999999999999988888887888889999999999999999999
Q ss_pred HHHHHHHH-HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 013253 109 CLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN 187 (447)
Q Consensus 109 ~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~ 187 (447)
.++.+++. +.++++|++.+++.|++.|++.+...+.... ++.|..++.++.... .....+..+|..+++.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~-----~~~~~~~~~g~~~~~~~~~ 165 (496)
T PRK03893 92 IVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSAT-YVIESWPKHLRNKAS-----GFLISGFSIGAVVAAQVYS 165 (496)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 99888876 6688999999999999999999988887755 777763222222111 1223345567777777777
Q ss_pred hhhcccccCccchhhhHHHHHHHHHHHHHHhccccCCCCC--CchhHHHHHHHHH----HH----------------Hhc
Q 013253 188 LLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPS--ESKDLLTQFRGAA----VA----------------IAS 245 (447)
Q Consensus 188 ~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~----------------~~~ 245 (447)
.+.+. ++||..|.+.....++. +......||+++.++ +.++..++..+.. ++ ...
T Consensus 166 ~l~~~--~~w~~~f~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (496)
T PRK03893 166 LVVPV--WGWRALFFIGILPIIFA-LWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFA 242 (496)
T ss_pred HHhcc--CCHHHHHHHHHHHHHHH-HHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 76654 45666666544333322 222234454321110 0000000000000 00 000
Q ss_pred c--hhHH---------------------------HHHHHHHhhhhhhh-hhhhhcccccccccCCCCc---hHHHHHHHH
Q 013253 246 D--EKIA---------------------------LLGAIQSLFEGSMY-TFVFLWTPALSPNDEEIPH---GFIFATFML 292 (447)
Q Consensus 246 ~--~~~~---------------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~i 292 (447)
. +..+ .............+ .....+.|.|+++..+.+. +...+...+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~ 322 (496)
T PRK03893 243 GNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGF 322 (496)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence 0 0000 00000000000000 0124567888866666655 677777888
Q ss_pred HHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHH
Q 013253 293 ASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSI 372 (447)
Q Consensus 293 ~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 372 (447)
+.++++++.|++.||+|||+. +..+..+..+........... . .+......++.+.......+..
T Consensus 323 ~~~~g~~~~g~l~dr~g~~~~--~~~~~~~~~~~~~~~~~~~~~-----------~--~~~~~~~~~~~~~~~~~~~~~~ 387 (496)
T PRK03893 323 GAAVGCCVGGFLGDWLGTRKA--YVCSLLISQLLIIPVFAIGGA-----------N--VWVLGLLLFFQQMLGQGISGLL 387 (496)
T ss_pred HHHHHHHHHHHHHHHhcchHH--HHHHHHHHHHHHHHHhhcccc-----------H--HHHHHHHHHHHHHHhcccchhh
Confidence 999999999999999998873 333333322222221111111 0 0122222222222222244667
Q ss_pred HHHHhhcCChhhhccccchhhhh------hhHHHHHHHHhhcccc
Q 013253 373 MKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFP 411 (447)
Q Consensus 373 ~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~ 411 (447)
.++.+|.+|++.|++++|+.+.. .++.+++.+.+..++.
T Consensus 388 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~ 432 (496)
T PRK03893 388 PKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLG 432 (496)
T ss_pred HHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChH
Confidence 78899999999999999886653 2334455555554433
No 41
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.95 E-value=1.9e-25 Score=212.23 Aligned_cols=362 Identities=16% Similarity=0.159 Sum_probs=212.8
Q ss_pred cchhhHHHHHHHHHHHhhhhhcchhHhH-hHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHH-HHHHHH
Q 013253 35 FNSFKNNYLLVYSLMMAGDWLQGPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACV-TYCLTY 112 (447)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~-~~~~~~ 112 (447)
.+...+..++..++..++..+..|.+|. +.+|+|.|++++|.+.+.....+.+.+++.|..+||+||||.++ .+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~ 92 (393)
T PRK15011 13 FDLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLG 92 (393)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 3444556666677777777777888876 45889999999999877666667777776655599999998755 445555
Q ss_pred HHHH-HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh-cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 013253 113 ILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLV 190 (447)
Q Consensus 113 ~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~ 190 (447)
+++. +.+++++++.+++.+.+.|...+...|.... +..|+ ++|++... .++.....+..+|..++|.+++.+.
T Consensus 93 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~lg~~~g~~i~~~l~ 167 (393)
T PRK15011 93 VLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFA-LAREHADKTGREAV----MFSSFLRAQVSLAWVIGPPLAYALA 167 (393)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHhhhccchHH----HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5554 5678899998876665555444555666644 66665 34444322 1222333455677788888888877
Q ss_pred cccccCccchhhhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchh-HHHHHHHHHhhhhhhhhhhhh
Q 013253 191 DSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEK-IALLGAIQSLFEGSMYTFVFL 269 (447)
Q Consensus 191 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 269 (447)
++. +||..|+..+...++..+......||.++++++.++.. +...++++ .+.......... ..+.....
T Consensus 168 ~~~--gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 237 (393)
T PRK15011 168 MGF--SFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATGTL-------EAPRRNRRDTLLLFVICTLMW-GTNSLYII 237 (393)
T ss_pred Hhc--ChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccccc-------cccccccccHHHHHHHHHHHH-HHHHHHHH
Confidence 544 66788888777666655555545666543222211110 11122222 222222222222 22333456
Q ss_pred cccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCc
Q 013253 270 WTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGG 346 (447)
Q Consensus 270 ~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (447)
+.|.|.++..+.+. +.......+..+++.++.|+++||++||+. +............. ......
T Consensus 238 ~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~--~~~~~~~~~~~~~~-~~~~~~---------- 304 (393)
T PRK15011 238 NMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFL--MRVAAVAGVCFYAG-MLMAHS---------- 304 (393)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH--HHHHHHHHHHHHHH-HHHHhh----------
Confidence 78888877666665 555555556778889999999999998873 33332222222211 111111
Q ss_pred cccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh------hhHHHHHHHHhhcccchHHHHHHHH
Q 013253 347 ISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMFGMCS 420 (447)
Q Consensus 347 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~ 420 (447)
.+..+....+.++..+...+....+.+|..|++ |+++.++.+.. .+..+++.+.+.. ++...+..+.
T Consensus 305 ----~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~--g~~~~~~~~~ 377 (393)
T PRK15011 305 ----PAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIW--NYHAVFWFAL 377 (393)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHH
Confidence 023344445555566655666677888998865 88888776553 2334445555543 4444444444
Q ss_pred HHHHHHHHHhh
Q 013253 421 IFLLVASVLQR 431 (447)
Q Consensus 421 ~~~~~~~~~~~ 431 (447)
...++..+...
T Consensus 378 ~~~~~~~~~~~ 388 (393)
T PRK15011 378 VMIIATLFCLL 388 (393)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 42
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.95 E-value=1.9e-25 Score=212.30 Aligned_cols=333 Identities=17% Similarity=0.131 Sum_probs=214.5
Q ss_pred HHHHHHHHHHHhhhhhcchhHhH-hHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-H
Q 013253 40 NNYLLVYSLMMAGDWLQGPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-I 117 (447)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~-i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l 117 (447)
+..+...++...+.....|+++. +.+++|+|+.++|.+.+...+...+.+++.|+++||+|||+++..+..+.+++. +
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~ 92 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFAT 92 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 44555556666677777788775 458899999999999988888888888999999999999999999999999876 5
Q ss_pred HhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 013253 118 TKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS 194 (447)
Q Consensus 118 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~ 194 (447)
+.++++++.+++.|+++|++.+...+...+ ++.|. ++|++..+... ....+|..++|.+++.+. .
T Consensus 93 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~--------~~~~~g~~ig~~l~g~l~-~-- 160 (400)
T PRK11646 93 MAIAHEPWLLWLSCILSGLGGTLFDPPRTA-LVIKLIRPHQRGRFFSLLM--------MQDSAGAVIGALLGSWLL-Q-- 160 (400)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH-H--
Confidence 678899999999999999999888777756 66665 34444333222 234455566666666655 2
Q ss_pred cCccchhhhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhccccc
Q 013253 195 LGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPAL 274 (447)
Q Consensus 195 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (447)
++|+..|++.+...++..+......||.+.++ +. ++..++.++.+++|+++.............. ....+.|.|
T Consensus 161 ~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~ 234 (400)
T PRK11646 161 YDFRLVCATGAVLFVLAAAFNAWLLPAYKLST-VR----TPVREGMTRVLRDKRFVTYVLTLTGYYMLAV-QVMLMLPIM 234 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCcccccc-cc----hhhHHHHHHHHcCchHHHHHHHHHHHHHHHH-HHHHhhhhh
Confidence 46677788776665554444333445432111 11 1223345677888887665444333222222 235678888
Q ss_pred ccccCCCCc--hHHHHHHHHHHHHHHHHHHHHhhc-CCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccch
Q 013253 275 SPNDEEIPH--GFIFATFMLASMLGSSLASRLMAR-SPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSG 351 (447)
Q Consensus 275 ~~~~~~~~~--~~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (447)
.++..+.+. +...+...+....+....+++.|| ++.++ .+..+..+..+...........
T Consensus 235 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~~~~~~~~l~~~~~~--------------- 297 (400)
T PRK11646 235 VNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEH--RLMAGLLIMSLSMFPIGMVSNL--------------- 297 (400)
T ss_pred HHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHhhhH---------------
Confidence 776544333 555566666555555555666654 54343 2334433333333322221111
Q ss_pred hhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhhh------hHHHHHHHHhh
Q 013253 352 SLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPL------NIFVCVVLYNV 407 (447)
Q Consensus 352 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~------~~~~~~~l~~~ 407 (447)
+.......+.+.+.+...|...++..|..|++.|++++|+.+... ++.+++.+.+.
T Consensus 298 ~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 298 QQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 234445566777777777888999999999999999999887642 33445555554
No 43
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.95 E-value=2.3e-25 Score=210.93 Aligned_cols=342 Identities=13% Similarity=0.123 Sum_probs=206.4
Q ss_pred HHHHHHHHHhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhc
Q 013253 42 YLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH 120 (447)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~ 120 (447)
++...++..+......|++|.+.+|+|.|+.++|++.+...+...+++++.|+++||+|||+.+..+.++.+++. .+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~ 90 (381)
T PRK03633 11 LLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGL 90 (381)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555666899999999999999999999999988888999999999999999999999999998876 6688
Q ss_pred CchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCc
Q 013253 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGP 197 (447)
Q Consensus 121 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~ 197 (447)
++|++.+++.|+++|++.+...+.... .+.+. ++|++..+. .. .+..+|..+++.+++.+.+... +
T Consensus 91 ~~~~~~l~~~~~l~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~----~~~~~g~~~g~~~~~~l~~~~~--~ 159 (381)
T PRK03633 91 MVGFWSWLAWRFVAGIGCAMIWVVVES-ALMCSGTSRNRGRLLAA----YM----MVYYLGTVLGQLLVSKVSTELM--S 159 (381)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCHHHHHHHHHH----HH----HHHHHHHHHHHHHHhccccccc--c
Confidence 999999999999999999988887655 43443 333443332 22 2344555666666665543221 1
Q ss_pred cchhhhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccc
Q 013253 198 VAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN 277 (447)
Q Consensus 198 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (447)
...+.. .............+.+++++++ +++ ++.++.+|+|+++........ ....+.....+.|.|.++
T Consensus 160 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~lp~~~~~ 229 (381)
T PRK03633 160 VLPWVT-GLVLAAILPLLFTRILNQQAEN-HDS-------TSIWPMLKLRQARLGVNGCII-SGIVLGSLYGLMPLYLNH 229 (381)
T ss_pred hHHHHH-HHHHHHHHHHHHhcccCCCCCC-CCC-------CCHHHHHHhcchHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 222222 2111111111121222221111 100 122345566665543322222 222222245567887765
Q ss_pred cCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhH
Q 013253 278 DEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQ 354 (447)
Q Consensus 278 ~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (447)
. +.+. +...+...++.+++++..+++.||+++|+. +..+.....++..... ... ..
T Consensus 230 ~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~--l~~~~~~~~~~~~~~~--~~~----------------~~ 288 (381)
T PRK03633 230 Q-GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLV--LRVQVFVVILGSIAML--SQA----------------AM 288 (381)
T ss_pred c-CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHH--HHHHHHHHHHHHHHHh--hhH----------------HH
Confidence 3 4443 566677778899999999999999998862 4433333333322211 111 22
Q ss_pred HHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh------hhHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 013253 355 LLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMFGMCSIFLLVAS 427 (447)
Q Consensus 355 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 427 (447)
.....+.+.+.....|...+.+.|..|+++++...+..+.. .++.+++.+.+..+ ....+...+...++..
T Consensus 289 ~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g--~~~~f~~~~~~~l~~~ 365 (381)
T PRK03633 289 APALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS--DNLLFIMIASVSFIYL 365 (381)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHH
Confidence 33445556655567799999999999988766655543322 34455666666543 3344444444444333
No 44
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.95 E-value=6.7e-27 Score=219.33 Aligned_cols=330 Identities=22% Similarity=0.293 Sum_probs=220.8
Q ss_pred HHHHHHhhhhhcchhHh-HhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCc
Q 013253 45 VYSLMMAGDWLQGPYVY-YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSP 122 (447)
Q Consensus 45 ~~~~~~~~~~~~~~~l~-~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~ 122 (447)
..++..+......|.+| .+.+++|.|+.+++++.+...+...+.+++.|+++||+|||+++..+.++.+++. +..+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~ 83 (352)
T PF07690_consen 4 AFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFAS 83 (352)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhh
Confidence 34555556666688888 7889999999999999999888889999999999999999999999999998884 445657
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhh
Q 013253 123 QYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFD 202 (447)
Q Consensus 123 ~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~ 202 (447)
|++.+++.|++.|++.+...+...+ ++.|..+++++.... .....+..+|..+++.+++.+.+.. +|+..|+
T Consensus 84 ~~~~~~~~~~l~g~~~~~~~~~~~~-~i~~~~~~~~~~~~~-----~~~~~~~~~g~~~g~~l~~~l~~~~--~~~~~~~ 155 (352)
T PF07690_consen 84 NFWLLLIARFLLGIGSGFFSPASNA-LIADWFPPEERGRAF-----GILSAGFSLGSILGPLLGGFLISYF--GWRWAFL 155 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCTCCHHHHH-----HHHHHHHHHHHHHHHHHHHHCCCHC--HHCCHHH
T ss_pred hHHHHhhhccccccccccccccccc-cccccchhhhhhhcc-----ccccchhhhhhhcccchhhhhhhcc--ccccccc
Confidence 8889999999999999999998866 888873333332211 1233345567777777777777444 4667788
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCC---chh---HHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhccccccc
Q 013253 203 AAACFLAIGMVIILSSWTENYGDPSE---SKD---LLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSP 276 (447)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (447)
+.+++.++..++.....+++++++++ .++ ..++..+..+..++++.+|............ +.....+.|.|.+
T Consensus 156 ~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 234 (352)
T PF07690_consen 156 ISAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFV-FSGFSFFLPLYLQ 234 (352)
T ss_dssp HHHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHH-HHHHHHHHHHHCC
T ss_pred cccchhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhHHHHH-HHHhhcccchhhh
Confidence 88877777655433233332222111 111 1111112255667777665232222222223 3335778888877
Q ss_pred ccCCCC-c---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchh
Q 013253 277 NDEEIP-H---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGS 352 (447)
Q Consensus 277 ~~~~~~-~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (447)
+..+.+ . +.......+...+++++.+++.||+++|+. .........+............+ ..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------------~~ 300 (352)
T PF07690_consen 235 EVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRR--LLIAILLLILGALGLLLLPFSSS------------PV 300 (352)
T ss_dssp HHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHHCCSHHHCH------------HH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH--HHHHHHHHHHHHHHHHHHHHhhh------------HH
Confidence 766766 3 555677778888889999999999988663 22222222222222211111100 12
Q ss_pred hHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhhhh
Q 013253 353 LQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLN 397 (447)
Q Consensus 353 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 397 (447)
.......+.|++.+...+...++..|..|+++|+++.|+.+...+
T Consensus 301 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 345 (352)
T PF07690_consen 301 WLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGS 345 (352)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 445567778889998899999999999999999999999876543
No 45
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.95 E-value=5.1e-25 Score=209.73 Aligned_cols=318 Identities=13% Similarity=0.078 Sum_probs=205.4
Q ss_pred HhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHH
Q 013253 50 MAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILM 128 (447)
Q Consensus 50 ~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~ 128 (447)
.+......|.+|.+.+++|.|+.+.+++.+...+...+++++.|+++||+|||+.+..+..+..++. +..++++++.++
T Consensus 21 ~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~ 100 (394)
T PRK11652 21 QMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLI 100 (394)
T ss_pred HHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 3444555888899999999999999999888888888889999999999999999999998888875 567889999999
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHH
Q 013253 129 IGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFL 208 (447)
Q Consensus 129 ~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~ 208 (447)
+.|++.|++.+...+.... +..|..++.+... .......+..++..++|.+++.+.+. ++||..|+..++..
T Consensus 101 ~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~i~~~l~~~--~g~~~~f~~~~~~~ 172 (394)
T PRK11652 101 AASAIQGLGTGVGGVMART-LPRDLYEGTQLRH-----ANSLLNMGILVSPLLAPLIGGLLTTL--FGWRACYLFLLLLG 172 (394)
T ss_pred HHHHHHHhhhhHHHHHHHH-HHHHhcCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhc--cChHHHHHHHHHHH
Confidence 9999999998877666544 6666522222221 11223445566777777777776653 45677787766655
Q ss_pred HHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hH
Q 013253 209 AIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GF 285 (447)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 285 (447)
++.........||+++++++++ +..+..++.+|+|+.+............... ...+.+.+.++..+.+. +.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~ 247 (394)
T PRK11652 173 AGVTFSMARWMPETRPADARRT----RVLASYRTLLSNRRFNCYLLMLIGTLAGIAV-FEACSGVLMGAVLGLSSMTVSI 247 (394)
T ss_pred HHHHHHHHHhCCccCccccchh----HHHHHHHHHHcChHHHHHHHHHHHHHHHHHH-HHHhChHHHHHHcCCCHHHHHH
Confidence 5444444445566443322211 2344566778888776554433332222222 34456667766566665 55
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhh
Q 013253 286 IFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACV 365 (447)
Q Consensus 286 ~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 365 (447)
......++.+++..+.+++.||.+++. ...........+....+...... ..+.......+.+++.
T Consensus 248 ~~~~~~~~~~~g~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~g~ 313 (394)
T PRK11652 248 LFILPIPAAFFGAWFAGRPNKRFSTLM-WQSVICCLLAGLLMWIPGWFGVM-------------NVWTLLVPAALFFFGA 313 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccc-------------cHHHHHHHHHHHHHHH
Confidence 555566777888888888888886222 11111111111111111111000 0134566677788888
Q ss_pred ccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 366 GIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 366 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+...|...++..|..|+ +++++.++.+..
T Consensus 314 ~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~ 342 (394)
T PRK11652 314 GMLFPLATSGAMEPFPY-LAGTAGALLGGL 342 (394)
T ss_pred HHHHHHHHHHHHhhccc-cchHHHHHHHHH
Confidence 88889999999999874 578877776643
No 46
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.95 E-value=1.1e-25 Score=214.37 Aligned_cols=319 Identities=15% Similarity=0.072 Sum_probs=207.9
Q ss_pred cchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHH
Q 013253 56 QGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILG 134 (447)
Q Consensus 56 ~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~ 134 (447)
..+..|.+.+++|.|+.+.|++.+...+...+.+++.|+++||+|||+++..+.++.+++. +.++++|++.+++.|++.
T Consensus 13 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 92 (399)
T TIGR00893 13 LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLL 92 (399)
T ss_pred hhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 3566678889999999999999999888888999999999999999999999999988876 668889999999999999
Q ss_pred HhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHH
Q 013253 135 GIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVI 214 (447)
Q Consensus 135 G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~ 214 (447)
|++.+...+.... ++.|..+++++.... .....+..+|..+++.+++.+.+.. +|+..|...+++.++..+.
T Consensus 93 g~~~~~~~~~~~~-~~~~~~~~~~r~~~~-----~~~~~~~~~g~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~ 164 (399)
T TIGR00893 93 GAAEAPFFPGIIL-IVASWFPASERATAV-----SIFNSAQGLGGIIGGPLVGWILIHF--SWQWAFIIEGVLGIIWGVL 164 (399)
T ss_pred HHHHHhhhhHHHH-HHHHhCCHHHHHHHH-----HHHHHhchHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHH
Confidence 9999999888756 888873322222211 1223344566677777777666544 4567777766665554444
Q ss_pred HHHhccccCCCCCCchhHHH------------------HHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhccccccc
Q 013253 215 ILSSWTENYGDPSESKDLLT------------------QFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSP 276 (447)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (447)
.....||+++++++.++..+ +..+..++.+++|+++.......+....... ...+.|.+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 243 (399)
T TIGR00893 165 WLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGF-FLTWFPTYLV 243 (399)
T ss_pred hhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHH-HHHHHHHHHH
Confidence 44334443221111000000 0011244667788877776665555555443 5778888887
Q ss_pred ccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHH--HHHHHHHHHHHhhhccCCCCCCCCccccch
Q 013253 277 NDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFV--VSSVSLLLPIVTSFLVAPSNVKSGGISFSG 351 (447)
Q Consensus 277 ~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (447)
+..+.+. +.......++.+++.+..+++.||++||+......... ............... . + ..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~----~~ 312 (399)
T TIGR00893 244 QERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNY-V------N----IP 312 (399)
T ss_pred HHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc-c------h----hH
Confidence 7666654 66677778889999999999999999885211111111 111111111111111 0 0 01
Q ss_pred hhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 352 SLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 352 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+.......+.+++.+ ..+...++.+|..|++.|+++.|+.+..
T Consensus 313 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 355 (399)
T TIGR00893 313 YAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSL 355 (399)
T ss_pred HHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHH
Confidence 122222333333333 6789999999999999999999887764
No 47
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.95 E-value=6e-25 Score=209.09 Aligned_cols=276 Identities=14% Similarity=0.096 Sum_probs=181.4
Q ss_pred hhhHHHHHHHHHHHhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH
Q 013253 37 SFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC 116 (447)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~ 116 (447)
|+-............+.....+.+|.+.+++|.|+.+.++..+...+...++.++.|+++||+|||+.+..+.++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~ 82 (392)
T PRK10473 3 RFLLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIAS 82 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHH
Confidence 33333444444444455555788999999999999999998888877777888999999999999999999999988876
Q ss_pred -HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 013253 117 -ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSL 195 (447)
Q Consensus 117 -l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~ 195 (447)
+...+++++.+++.|+++|++.+...+...+ ++.|..+++++...... ......++..++|.+++.+.+. +
T Consensus 83 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~-----~~~~~~i~~~~~~~i~~~l~~~--~ 154 (392)
T PRK10473 83 LLCSLAETSSLFLAGRFLQGIGAGCCYVVAFA-ILRDTLDDRRRAKVLSL-----LNGITCIIPVLAPVLGHLIMLK--F 154 (392)
T ss_pred HHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHcCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhC--c
Confidence 5678899999999999999999988777655 77776333333222211 1122335556666666665543 4
Q ss_pred CccchhhhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccc
Q 013253 196 GPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALS 275 (447)
Q Consensus 196 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (447)
+|+..|++.+.+.++..++.....||++++++++++ +..+..++.+++++++.......+....... ...+.|.+.
T Consensus 155 g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 230 (392)
T PRK10473 155 PWQSLFYTMAAMGILVLLLSLFILKETRPARAPAAS---SKPRENSESLLNRFFLSRLVITTLSVTVILT-FVNTSPVLL 230 (392)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCcc---chHHHHHHHHhCHHHHHHHHHHHHHHHHHHH-HHHhCHHHH
Confidence 567777777666655555544455655433221111 1122334567777766554444333333232 345667676
Q ss_pred cccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHH
Q 013253 276 PNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVS 326 (447)
Q Consensus 276 ~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~ 326 (447)
++..+.+. +.......++.+++.++.+++.||+|+|+. +..+.....+.
T Consensus 231 ~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~--~~~~~~~~~~~ 282 (392)
T PRK10473 231 MEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTL--MLTSQVLFLAA 282 (392)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHH
Confidence 66566655 556677778899999999999999998773 44444433333
No 48
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.95 E-value=3.8e-25 Score=216.28 Aligned_cols=336 Identities=14% Similarity=0.101 Sum_probs=196.8
Q ss_pred chhhHHHHHHHHHHHhhhhhc----chhHhHhHhhc--------CCCCcchhHHHHHHHHhhhhhccccchhhhccCchh
Q 013253 36 NSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTY--------GFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKR 103 (447)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~----~~~l~~i~~~~--------g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~ 103 (447)
++++++...+..+..+.++++ ++..|.+.+++ +.++.+.+++.+...+...++++++|+++||+||||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~ 86 (479)
T PRK10077 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (479)
T ss_pred chHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 344566666666666666666 66666676666 888899999988888888889999999999999999
Q ss_pred HHHHHHHHHHHHH-HHhcC------------chhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhc---ccchhhhHHHHHH
Q 013253 104 ACVTYCLTYILSC-ITKHS------------PQYKILMIGRILGGIATSLLFSAFESWLVAEHN---KRGFEQQWLSITF 167 (447)
Q Consensus 104 ~l~~~~~~~~i~~-l~~~~------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~---~r~~~~~~~~~~~ 167 (447)
++..+.+++.++. .+++. ++++.+++.|+++|++.|...+.... +++|+. +|++..+..+
T Consensus 87 ~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~-~i~e~~~~~~rg~~~~~~~--- 162 (479)
T PRK10077 87 SLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPM-YIAEIAPAHIRGKLVSFNQ--- 162 (479)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHH-HHHhhCChhhhhHHHHHHH---
Confidence 9999999988765 44432 23567889999999999999998866 889983 3444443322
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhc------ccccCccchhhhHHHHHHHHHHHHHHhccccCCC---CCCchh---HHH-
Q 013253 168 SKAIFLGNGLVAILSGLFGNLLVD------SFSLGPVAPFDAAACFLAIGMVIILSSWTENYGD---PSESKD---LLT- 234 (447)
Q Consensus 168 ~~~~~~g~~ig~~~~~~l~~~l~~------~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~- 234 (447)
.+.. +|..+++.++..+.. ...++||.+|++.++..++..+. ....||+++. +++.++ ..+
T Consensus 163 -~~~~----~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~~l~~~~~~~~~~~~~~~ 236 (479)
T PRK10077 163 -FAII----FGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETPRYLMSRGKQEQAEGILRK 236 (479)
T ss_pred -HHHH----HHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcHHHHHcCCHHHHHHHHHH
Confidence 2233 333333333222211 12467888888876666555443 3356765421 111111 000
Q ss_pred --------HHHHHHHHHhc-----chhHHHH---HHH-----HHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHH
Q 013253 235 --------QFRGAAVAIAS-----DEKIALL---GAI-----QSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATF 290 (447)
Q Consensus 235 --------~~~~~~~~~~~-----~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 290 (447)
+..+..++..+ .++.+.. .+. ..+.+...+....++.|.+.++ .+.+. .......
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~ 315 (479)
T PRK10077 237 IMGNTLATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIV 315 (479)
T ss_pred HcCChhHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHH
Confidence 00001111111 1111100 000 0111111112234455665543 33332 3444556
Q ss_pred HHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccch-
Q 013253 291 MLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFW- 369 (447)
Q Consensus 291 ~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~- 369 (447)
++..+++.++.++++||+|||+. +..+..+..++............ . ........++++++.+...
T Consensus 316 ~~~~~i~~~~~g~l~dr~g~r~~--~i~~~~~~~v~~~~l~~~~~~~~---------~--~~~~~~~~~~~~~~~~~~~~ 382 (479)
T PRK10077 316 GVINLTFTVLAIMTVDKFGRKPL--QIIGALGMAIGMFSLGTAFYTQA---------P--GIVALLSMLFYVAAFAMSWG 382 (479)
T ss_pred HHHHHHHHHHHHHHHHHhcChHH--HHHhHHHHHHHHHHHHHHHhcCc---------c--cHHHHHHHHHHHHHHhcccc
Confidence 67888999999999999998873 44444444444333322211100 0 0123334455555555433
Q ss_pred hHHHHHHhhcCChhhhccccchhhhh
Q 013253 370 PSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 370 ~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
|..+.+++|.+|++.|+++.|+.+..
T Consensus 383 ~~~~~~~~e~~p~~~r~~~~g~~~~~ 408 (479)
T PRK10077 383 PVCWVLLSEIFPNAIRGKALAIAVAA 408 (479)
T ss_pred chhHHHhHhhCChhHHHHHHHHHHHH
Confidence 77899999999999999999987654
No 49
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.95 E-value=3.6e-25 Score=209.52 Aligned_cols=335 Identities=12% Similarity=0.063 Sum_probs=224.3
Q ss_pred HHHHHHHHHhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHH-HH-H-HH
Q 013253 42 YLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYI-LS-C-IT 118 (447)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~-i~-~-l~ 118 (447)
....++......++..|++|.+.+|+|.|..++|.+.+...+...+.++++|+++||+|||+.......... +. . ..
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~ 88 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFS 88 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566777999999999999999999999999888888999999999999998554322222211 11 2 33
Q ss_pred hcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh-cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCc
Q 013253 119 KHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGP 197 (447)
Q Consensus 119 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~ 197 (447)
..+++++.+++.|.++|.+.+...|...+ +..|+ ++|++..+..+. +..+|..++|.+++.+.+.. +|
T Consensus 89 ~~~~~~~~l~~~~~l~~~~~~~~~p~~~a-l~~~~~~~~~~~~g~~~~--------~~slG~~~g~~l~g~l~~~~--g~ 157 (382)
T TIGR00902 89 AGAHNAWLLFIAIGLFALFFSAGMPIGDA-LANTWQKQFGLDYGKVRL--------IGSAAFIIGSALFGGLIGMF--DE 157 (382)
T ss_pred HhhhhHHHHHHHHHHHHHHHccchhHHHH-HHHHHHHHcCCCccHHHH--------HHHHHHHHHHHHHHHHHHHc--Ch
Confidence 56889999999999999998888888766 55555 445554443222 34477777788888877654 45
Q ss_pred cchhhhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccc
Q 013253 198 VAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN 277 (447)
Q Consensus 198 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (447)
|..|.+......+.. ......|+.+++++++++. ++..+..++++|+|+++.......+.+..... ...+.|.|.++
T Consensus 158 ~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~-~~~~~~~~l~~ 234 (382)
T TIGR00902 158 QNILAILTAGLAFML-IGFLIKPTIPPKDAIPEDE-SQGDSAFIALLKNPMNLRFLAAVCLIQGAHAA-YYGFSAIYWQA 234 (382)
T ss_pred hHHHHHHHHHHHHHH-HHHHcCCCCCCCccccccc-cccchhHHHHHcChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 566766544432222 2221222211111111111 11122456788999998887776666655444 46678888865
Q ss_pred cCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhH
Q 013253 278 DEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQ 354 (447)
Q Consensus 278 ~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (447)
.|.+. |..+....++.+++....+++.||+|+|+. +..+.....+........... +..
T Consensus 235 -~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~--l~~~~~~~~~~~~~~~~~~~~---------------~~~ 296 (382)
T TIGR00902 235 -AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDL--LLISAIACVGRWAIIGAIEAF---------------PLI 296 (382)
T ss_pred -CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHH--HHHHHHHHHHHHHHHHhHhhH---------------HHH
Confidence 56655 667777778899999999999999998773 545555555444443322222 356
Q ss_pred HHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh-------hhHHHHHHHHhhcc
Q 013253 355 LLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP-------LNIFVCVVLYNVDA 409 (447)
Q Consensus 355 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-------~~~~~~~~l~~~~~ 409 (447)
+....+.++.++...+....++++. |++.|+++.++++.. .+..+++.+.+..+
T Consensus 297 ~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g 357 (382)
T TIGR00902 297 FLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG 357 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7778999999999999999999998 999999888886531 24566677777643
No 50
>PRK10054 putative transporter; Provisional
Probab=99.95 E-value=6.5e-25 Score=208.26 Aligned_cols=361 Identities=14% Similarity=0.075 Sum_probs=224.3
Q ss_pred chhhHHHHHHHHHHHhhhhhcchhHhHhH-hhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHH
Q 013253 36 NSFKNNYLLVYSLMMAGDWLQGPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL 114 (447)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i 114 (447)
+|..+.++...++...+.+...|++|... +++|+|+.++|++.+...+.+.+.+++.|+++||+|||+++..+.++.++
T Consensus 6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~ 85 (395)
T PRK10054 6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFAS 85 (395)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHH
Confidence 33344555556666667777788877554 78999999999999988888888999999999999999999999988888
Q ss_pred HH-HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 013253 115 SC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF 193 (447)
Q Consensus 115 ~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~ 193 (447)
+. +..++++++.+++.|.+.|.+.+...+.... +..|..+++++.... + .......+|..++|.+++.+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~----g-~~~~~~~lg~~igp~l~~~l~~-- 157 (395)
T PRK10054 86 GFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKA-WFADNLSSTSKTKIF----S-LNYTMLNIGWTVGPPLGTLLVM-- 157 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCHhHHHHHH----H-HHHHHHHHHHHHHHHHHHHHHH--
Confidence 76 5688999999999999998887777666655 666652222222211 1 1122334566666677766653
Q ss_pred ccCccchhhhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccc
Q 013253 194 SLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPA 273 (447)
Q Consensus 194 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (447)
++|+.+|...+++.++..+......|+++++++++++ ++ .+.++.+|+|+++.......+....... ...+.+.
T Consensus 158 -~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~ 231 (395)
T PRK10054 158 -QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATETG--SV--WSPSVLLQDKALLWFTCSGFLASFVSGA-FASCISQ 231 (395)
T ss_pred -hccCcHHHHHHHHHHHHHHHHHHHHhccccccccchh--hh--hhhhhhccCceehHHHHHHHHHHHHHHH-hhhhHHH
Confidence 3567788877766665544443334444322211111 11 1235677888887766555544433222 2234444
Q ss_pred ccc--ccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccc
Q 013253 274 LSP--NDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGIS 348 (447)
Q Consensus 274 ~~~--~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (447)
+.. ++.+.+. +.......+.....+...+++.||.++|+. +..+..+..+...........
T Consensus 232 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~------------ 297 (395)
T PRK10054 232 YVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPL--MTAGTLCFVIGLVGFIFSGNS------------ 297 (395)
T ss_pred HHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhH--HHHHHHHHHHHHHHHHHcchH------------
Confidence 442 2223333 445555555666667888999999987773 444443333333332211111
Q ss_pred cchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh-----hhHHHHHHHHhhcccchHHHHHHHHHHH
Q 013253 349 FSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP-----LNIFVCVVLYNVDAFPITVMFGMCSIFL 423 (447)
Q Consensus 349 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 423 (447)
.+...+...+.+++.+...|..++.+.+..|++.|++..+..+.. .++..++.+.+.. ++...+.+.+...
T Consensus 298 --~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~Gp~~~G~l~~~~--g~~~~~~~~~~~~ 373 (395)
T PRK10054 298 --LLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQSLGWLGAAINPLVSGVILTTL--PPWSLFVILALAI 373 (395)
T ss_pred --HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHHHHHHHHHHHHHHHHHHHHHc--ChhhHHHHHHHHH
Confidence 123455677788888877788899999999999999887754432 4556666666663 4444444444443
Q ss_pred HHHHH
Q 013253 424 LVASV 428 (447)
Q Consensus 424 ~~~~~ 428 (447)
.+..+
T Consensus 374 ~~~~~ 378 (395)
T PRK10054 374 VAAWL 378 (395)
T ss_pred HHHHH
Confidence 33333
No 51
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.95 E-value=1.8e-25 Score=218.94 Aligned_cols=323 Identities=14% Similarity=0.113 Sum_probs=220.1
Q ss_pred hhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHH
Q 013253 51 AGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMI 129 (447)
Q Consensus 51 ~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~ 129 (447)
+......+.+|.+.+++|.|+.+.+++.+...+...++.++.|+++||+|||+.+..+.++..++. ++++++|++.+++
T Consensus 16 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (485)
T TIGR00711 16 LDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMII 95 (485)
T ss_pred HHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 344444788899999999999999999888888888888999999999999999999999998876 6789999999999
Q ss_pred HHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHH
Q 013253 130 GRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA 209 (447)
Q Consensus 130 ~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~ 209 (447)
.|+++|++.+...+...+ ++.|..+++++.. .......+..+|..+++.+++++.++. +||+.|++...+.+
T Consensus 96 ~~~~~G~~~~~~~~~~~~-~i~~~~~~~~r~~-----~~~~~~~~~~~g~~~g~~~~~~l~~~~--~w~~~f~~~~~~~~ 167 (485)
T TIGR00711 96 FRVIQGFGGGPLIPLSFS-TLLNIYPPEKRGR-----AMAIWGLTVLVAPALGPTLGGWIIENY--HWRWIFLINVPIGI 167 (485)
T ss_pred HHHHHHhhhhhHHHHHHH-HHHHHCCHHHHHH-----HHHHHHHHHHHHhhhhhccHhHhccCc--CceehhhhhhHHHH
Confidence 999999999999888766 7787733222222 111233445577777888888877544 55666777666655
Q ss_pred HHHHHHHHhccccCCCCCCchhHH----------------------------------------------HHHH--H--H
Q 013253 210 IGMVIILSSWTENYGDPSESKDLL----------------------------------------------TQFR--G--A 239 (447)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~--~--~ 239 (447)
+.........||++++++++.+.. ++.+ + .
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (485)
T TIGR00711 168 IVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLV 247 (485)
T ss_pred HHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 554444444454332221111100 0000 0 0
Q ss_pred HHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHH
Q 013253 240 AVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYM 316 (447)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l 316 (447)
..+.+++|+++...+...+.....+. ..++.|.|.++..+.+. +.......++.+++.++.|++.||+|||+. +
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~--~ 324 (485)
T TIGR00711 248 DLRLFKYRNFTIGCVYMSLLGLGLYG-SFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKL--V 324 (485)
T ss_pred CHHHHcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH--H
Confidence 11345666666665555554444444 46788988887777665 666677778899999999999999998772 4
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 317 QIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
..+..+..+........... . . ..+.......+.|++.+...+.......+..|+++++++.|+.++.
T Consensus 325 ~~g~~~~~~~~~~~~~~~~~-~------~----~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 392 (485)
T TIGR00711 325 TIGLILYAVGFYWRAFTFTP-D------T----PFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFT 392 (485)
T ss_pred HHHHHHHHHHHHHHhccCCC-C------C----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHH
Confidence 44444443333332211111 0 0 0124455577888888888877788888889999999999887764
No 52
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.95 E-value=3e-25 Score=215.84 Aligned_cols=310 Identities=12% Similarity=-0.001 Sum_probs=197.0
Q ss_pred hcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HH--hcCchhHHHHHHHHHHHhhhhhhh
Q 013253 66 TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT--KHSPQYKILMIGRILGGIATSLLF 142 (447)
Q Consensus 66 ~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~--~~~~~~~~l~~~r~l~G~~~~~~~ 142 (447)
|++++..+.|.+.+.......+++++.|+++||+|||+++..+.++.+++. ++ +...+++.+++.|+++|++.+...
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence 789999999999888888888889999999999999999999999888865 43 334668889999999999999999
Q ss_pred hhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHHHHhcccc
Q 013253 143 SAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTEN 222 (447)
Q Consensus 143 ~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 222 (447)
+.... +++|+.+++++.. .......+..+|..+++.+++.+.+.. .+||.+|++.++..++..+......+|+
T Consensus 150 ~~~~~-~~~~~~~~~~r~~-----~~~~~~~~~~~g~~i~~~l~~~l~~~~-~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 222 (465)
T TIGR00894 150 PATHK-IIVKWAPPKERSR-----LLGMSTSGFQLGTFIFLPISGWLCESW-GGWPMIFYVFGIVGCAWSLLWFVFPADD 222 (465)
T ss_pred hhHHH-HHHhcCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence 98866 8888844433332 222334456677777777777776532 2667788887776655444433333332
Q ss_pred CCCCCC-chhHHHH-------------HHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hH
Q 013253 223 YGDPSE-SKDLLTQ-------------FRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GF 285 (447)
Q Consensus 223 ~~~~~~-~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 285 (447)
++++++ .++..+. .+..++++++++.++...+...+.....+. ...|.|.|+++..+.+. +.
T Consensus 223 p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lp~~l~~~~g~s~~~~g~ 301 (465)
T TIGR00894 223 PSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTI-LPTYLPTFISWVLRVSGKENGL 301 (465)
T ss_pred cccCCCCCHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcChHHhHH
Confidence 221111 1111000 011356778888888877666665555554 57899999987666655 66
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcchhH-H-H--HHHHHHHHHHHH-HHHhhhccCCCCCCCCccccchhhHHHHHHH
Q 013253 286 IFATFMLASMLGSSLASRLMARSPPRVESY-M-Q--IVFVVSSVSLLL-PIVTSFLVAPSNVKSGGISFSGSLQLLGFCT 360 (447)
Q Consensus 286 ~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~-l-~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 360 (447)
..+...++..++.++.|+++||+++|+... . . ............ ......... + .+..+..+.+
T Consensus 302 ~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~l 370 (465)
T TIGR00894 302 LSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSA-------A----FYLTIIILTL 370 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------c----hHHHHHHHHH
Confidence 667778889999999999999875442110 0 0 111111111111 111111100 0 1133344445
Q ss_pred HHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 361 FEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 361 ~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
.+.+.+...+.......|..|+ .+|.+.|+.++.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~ 404 (465)
T TIGR00894 371 ANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLP 404 (465)
T ss_pred HHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHH
Confidence 4555554555555666677766 788888887765
No 53
>PRK11043 putative transporter; Provisional
Probab=99.94 E-value=2.1e-24 Score=205.99 Aligned_cols=316 Identities=14% Similarity=0.120 Sum_probs=205.9
Q ss_pred hhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHH
Q 013253 51 AGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMI 129 (447)
Q Consensus 51 ~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~ 129 (447)
+......|.+|.+.+++|.|+++.++..+...+...++++++|+++||+|||+.+..+..+.+++. +..++++++.+++
T Consensus 20 ~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (401)
T PRK11043 20 LATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLV 99 (401)
T ss_pred HHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 344444888888899999999999999998888888889999999999999999999998888876 6688999999999
Q ss_pred HHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHH
Q 013253 130 GRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA 209 (447)
Q Consensus 130 ~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~ 209 (447)
.|+++|++.+...+...+ ++.|..++++..+.... ......++..++|.+++.+.+.. +|+..|++...+.+
T Consensus 100 ~~~l~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~i~~~l~~~~--g~~~~~~~~~~~~~ 171 (401)
T PRK11043 100 LRFVQAVGVCSAAVIWQA-LVIDRYPAQKANRVFAT-----IMPLVALSPALAPLLGAWLLNHF--GWQAIFATLFAITL 171 (401)
T ss_pred HHHHHHhhhHHHHHHHHH-HHHHhcCcHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHH
Confidence 999999998877766545 67776444433332222 12234456667777777776544 56677777666655
Q ss_pred HHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHH
Q 013253 210 IGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFI 286 (447)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 286 (447)
+..+... ..+|+++++++ + +.+.+.++.+|+|+.+...+...+.....+. ...+.|.+.++ .+.+. +..
T Consensus 172 ~~~~~~~-~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~-~g~s~~~~g~~ 243 (401)
T PRK11043 172 LLILPTL-RLKPSKKARKQ-S----QDALTFKQLLKSKTYLGNVLIFAACSAAFFA-WLTGSPFILEQ-MGYSPADIGLS 243 (401)
T ss_pred HHHHHHH-HcCCCCCcccc-c----hHHHHHHHHHcChhHHHHHHHHHHHHHHHHH-HHHHhHHHHHH-cCCCHHHHHHH
Confidence 5444433 34443322211 1 1123456677788776554444443333333 35667777654 45554 555
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhc
Q 013253 287 FATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVG 366 (447)
Q Consensus 287 ~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 366 (447)
.....++.+++.+..+++.||+++|+. .........++............ ++ .+.......+.+++.+
T Consensus 244 ~~~~~~~~~~g~~~~~~l~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~ 311 (401)
T PRK11043 244 YVPQTIAFLVGGYGCRAALQKWGGEQL--LPWLLVLFAVSVIAIWLASLLSH------PS----LVPLLIPFCVMAAANG 311 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHH--HHHHHHHHHHHHHHHHHHHHhcc------Cc----HHHHHHHHHHHHHHHH
Confidence 555667888899999999999987763 22222222222221111111100 00 1234455667788888
Q ss_pred cchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 367 IFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 367 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
..+|...+...|..|+ +++++.|+.+..
T Consensus 312 ~~~~~~~~~~~~~~~~-~~g~~~g~~~~~ 339 (401)
T PRK11043 312 AIYPIVVAQALRPFPQ-ATGKAAALQNTL 339 (401)
T ss_pred HHHHHHHHHHhhhCcc-cChHHHHHHHHH
Confidence 8888888888887765 689998887764
No 54
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.94 E-value=1.1e-24 Score=213.61 Aligned_cols=345 Identities=11% Similarity=-0.036 Sum_probs=198.0
Q ss_pred CCcccchhhHHHHHHHHHHHhhhhhc----chhHhHhHhhc-----CCCCcchhHHHHHHHHhhhhhccccchhhhccCc
Q 013253 31 TSSAFNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTY-----GFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR 101 (447)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~i~~~~-----g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Gr 101 (447)
++.++.++++..+.++.+..+.++++ +...|.+.+++ +.++.+.+++.+...+...++++++|+++||+||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Gr 85 (502)
T TIGR00887 6 DTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGR 85 (502)
T ss_pred hccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44567778888888888888888887 44455554432 3445566777777777777888899999999999
Q ss_pred hhHHHHHHHHHHHHH-HHhcCch------hHHHHHHHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHH
Q 013253 102 KRACVTYCLTYILSC-ITKHSPQ------YKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAI 171 (447)
Q Consensus 102 r~~l~~~~~~~~i~~-l~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~ 171 (447)
|+++..+.++..++. +++++++ ++.+++.|+++|++.+...+.... +++|. +.|++..+.... ..
T Consensus 86 r~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~-~~~e~~p~~~Rg~~~~~~~~----~~ 160 (502)
T TIGR00887 86 KRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAI-ITSEFATKKWRGAMMAAVFA----MQ 160 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhcChhhHHHHHHHHHH----HH
Confidence 999999999998875 5566655 789999999999999999888855 88988 444444443332 33
Q ss_pred HHHHHHHHHHhhhhhhhhhc-----------------ccccCccchhhhHHHHHHHHHHHHHHhccccCC------CCCC
Q 013253 172 FLGNGLVAILSGLFGNLLVD-----------------SFSLGPVAPFDAAACFLAIGMVIILSSWTENYG------DPSE 228 (447)
Q Consensus 172 ~~g~~ig~~~~~~l~~~l~~-----------------~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 228 (447)
.+|..+|+.++..+.....+ ...|+||.++.+.++..++..+.. +..||+++ ++++
T Consensus 161 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~-~~lpESpr~l~~~~~~~~ 239 (502)
T TIGR00887 161 GFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFR-LTIPETPRYTADVAKDVE 239 (502)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHhCcchH
Confidence 33444444443332221110 124689999877666655544443 35676432 1111
Q ss_pred -chhHHH----------------------HHHHHHHHHhcc---hhHHHHH---HHHHhhhhhhhhhhhhcccccccccC
Q 013253 229 -SKDLLT----------------------QFRGAAVAIASD---EKIALLG---AIQSLFEGSMYTFVFLWTPALSPNDE 279 (447)
Q Consensus 229 -~~~~~~----------------------~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (447)
+++..+ ..+..+++++++ ++.+... ....+.....+.....|.|.++++ .
T Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~ 318 (502)
T TIGR00887 240 QAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-I 318 (502)
T ss_pred HHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-H
Confidence 110000 001123444432 1211111 111111222222245667777643 2
Q ss_pred CCCc---hH------------HHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 013253 280 EIPH---GF------------IFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS 344 (447)
Q Consensus 280 ~~~~---~~------------~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (447)
|.+. +. ......++.+++.++.++++||+|||+. +..+..+.+++..+.........
T Consensus 319 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~--l~~~~~~~~~~~~~l~~~~~~~~------ 390 (502)
T TIGR00887 319 GYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPI--QLMGFFILTVLFFVLGFAYNHLS------ 390 (502)
T ss_pred cCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhH--HHHHHHHHHHHHHHHHHHHHhcc------
Confidence 3221 10 1223335667788999999999999883 44444444444333332211100
Q ss_pred CccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 345 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
. . ...........+......+..+.+..|.+|++.|+++.|+.+..
T Consensus 391 ~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~ 436 (502)
T TIGR00887 391 T--H---GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAAS 436 (502)
T ss_pred h--h---HHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHH
Confidence 0 0 01111111111212224467788889999999999999987764
No 55
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.94 E-value=3e-24 Score=204.63 Aligned_cols=355 Identities=11% Similarity=0.123 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HH
Q 013253 40 NNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT 118 (447)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~ 118 (447)
.......++...+.+...++++.+.+|+|.|+.+.|++.+...+...+++++.|+++||+||||++..+..+.+++. ++
T Consensus 16 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~ 95 (402)
T TIGR00897 16 LWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAF 95 (402)
T ss_pred hHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 34445555666677777777788889999999999999888888888889999999999999999999999888764 32
Q ss_pred ---hc-CchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHH-HHhhhhhhhhh
Q 013253 119 ---KH-SPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVA-ILSGLFGNLLV 190 (447)
Q Consensus 119 ---~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~-~~~~~l~~~l~ 190 (447)
+. .++++.+++.|+++|++.+...+.... .+.|. ++|++..+.... +..+|. .+++.+++.+.
T Consensus 96 ~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~-~~~~~~~~~~~g~~~g~~~~--------~~~~g~~~~g~~~~~~l~ 166 (402)
T TIGR00897 96 IVFGLGHANYPLILLFYGIRGLGYPLFAYSFLV-WVVYNTKQDNLSSAVGWFWA--------VYSIGIGVFGSYYSSYAI 166 (402)
T ss_pred HHHhccCccHHHHHHHHHHHHcchHHHHhHHHH-HHHHhCCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhcc
Confidence 23 358889999999999998877666544 44443 445554443322 233443 35566666665
Q ss_pred cccccCccchhhhHHHHHHHHHHHHHHhccccCCC-CCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhh
Q 013253 191 DSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGD-PSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFL 269 (447)
Q Consensus 191 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (447)
+..+| +..++.......+.........++.+++ ++++++..++..+..++++|+|+++...+...+.....+. ..+
T Consensus 167 ~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 243 (402)
T TIGR00897 167 PAFGE--MNTLWSALAFVLTGGVIALFSNKDIFTPQHMQTREKFSELGKAATILFTNPNVLLGGMVRIINTIGLFG-FAV 243 (402)
T ss_pred cccch--HHHHHHHHHHHHHHHHHHHhccCCCCCcccccCCcchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHH-HHH
Confidence 54443 2223322222222222222222222111 1111111223334456788899888776665554444444 577
Q ss_pred cccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCc
Q 013253 270 WTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGG 346 (447)
Q Consensus 270 ~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (447)
|.|.|.++ .+.+. +.......++..++++..|+++||++||+.. .........+.............+ +
T Consensus 244 ~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~-~~~~~l~~~~~~~~l~~~~~~~~~------~ 315 (402)
T TIGR00897 244 FLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTV-RWFGGVGCGIFTLALYYIPQHFGH------S 315 (402)
T ss_pred HHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH-HHHHHHHHHHHHHHHHHHHHccCC------c
Confidence 88988754 55554 4555667788999999999999999987731 111222222221121111111000 0
Q ss_pred cccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhhh------hHHHHHHHHhhcccchHHHHHHHH
Q 013253 347 ISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPL------NIFVCVVLYNVDAFPITVMFGMCS 420 (447)
Q Consensus 347 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~ 420 (447)
.+...+..++.|++.+...+ ......|..| ++|+++.|+.+... ++.+++.+.+.. ++...+..++
T Consensus 316 ----~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~--g~~~~~~~~a 387 (402)
T TIGR00897 316 ----FAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF--GAIGVVWIFA 387 (402)
T ss_pred ----HHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--chHHHHHHHH
Confidence 12344556666776665444 3456667655 57999999877652 334444555543 3333444433
Q ss_pred HH
Q 013253 421 IF 422 (447)
Q Consensus 421 ~~ 422 (447)
++
T Consensus 388 ~~ 389 (402)
T TIGR00897 388 AL 389 (402)
T ss_pred HH
Confidence 33
No 56
>TIGR00898 2A0119 cation transport protein.
Probab=99.94 E-value=5.9e-25 Score=216.24 Aligned_cols=309 Identities=13% Similarity=0.036 Sum_probs=199.9
Q ss_pred hhHhHhHhhcCCC---CcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHH
Q 013253 58 PYVYYLYSTYGFG---KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRIL 133 (447)
Q Consensus 58 ~~l~~i~~~~g~s---~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l 133 (447)
+..+.+.+|+|++ +.+.++..+..++...+++++.|+++||+|||+++..+.++.+++. +.++++|++.+++.|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 6677888999998 8889998888888888888999999999999999999999988876 66899999999999999
Q ss_pred HHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHH
Q 013253 134 GGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV 213 (447)
Q Consensus 134 ~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~ 213 (447)
.|++.+...+.... ++.|..+++++.. .......+..+|.++++.++..+. +||..+++.++..++..+
T Consensus 190 ~G~~~~~~~~~~~~-~~~e~~~~~~r~~-----~~~~~~~~~~~g~~~~~~~~~~~~-----~wr~~~~~~~i~~~~~~~ 258 (505)
T TIGR00898 190 VGMGIGGIWVQAVV-LNTEFLPKKQRAI-----VGTLIQVFFSLGLVLLPLVAYFIP-----DWRWLQLAVSLPTFLFFL 258 (505)
T ss_pred HHhhccchHHHHHH-HhheecChhhhHH-----HHHHHHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHH
Confidence 99999998888756 8888843333322 111223455566666666665543 267777777666555444
Q ss_pred HHHHhccccCC------CCCCchhHHHH------------------------H--HHHHHHHhcchhHHHHHHHHHhhhh
Q 013253 214 IILSSWTENYG------DPSESKDLLTQ------------------------F--RGAAVAIASDEKIALLGAIQSLFEG 261 (447)
Q Consensus 214 ~~~~~~~~~~~------~~~~~~~~~~~------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (447)
.. ...||+++ +.+++++..++ . +...++++++|+.+...+...+...
T Consensus 259 ~~-~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 337 (505)
T TIGR00898 259 LS-WFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWF 337 (505)
T ss_pred HH-HhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHH
Confidence 43 35565421 11111000000 0 0133456677776665444433322
Q ss_pred hhhhhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 013253 262 SMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSN 341 (447)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (447)
.... .++...+..+..+.+........++..+++.++.+++.||+|||+. +.....+.+++..........
T Consensus 338 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~--~~~~~~~~~~~~l~~~~~~~~----- 408 (505)
T TIGR00898 338 TTAF--SYYGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYT--MAASLLLAGVALLLLLFVPVD----- 408 (505)
T ss_pred HHHH--HHHHHhccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH--HHHHHHHHHHHHHHHHHcCCC-----
Confidence 2111 1121122222334444444456677888999999999999998873 444444444444333222111
Q ss_pred CCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 342 VKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
. .+......++.+++.+..++..+.+.+|.+|++.|++++|+.+..
T Consensus 409 ----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~ 454 (505)
T TIGR00898 409 ----L----YFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTM 454 (505)
T ss_pred ----c----hHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHH
Confidence 0 023344455556667777788899999999999999999987764
No 57
>TIGR00895 2A0115 benzoate transport.
Probab=99.94 E-value=8.1e-25 Score=208.74 Aligned_cols=330 Identities=21% Similarity=0.220 Sum_probs=209.1
Q ss_pred chhhHHHHHHHHHHHhhhhhc----chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHH
Q 013253 36 NSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLT 111 (447)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~----~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~ 111 (447)
++.++..+..+.+..+.++.+ .+..|.+.+++|.++.+.+++.+...+...+++++.|+++||+|||+.+..+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 91 (398)
T TIGR00895 12 SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL 91 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 344455444444444443332 6677888899999999999998888887888889999999999999999999988
Q ss_pred HHHHH-HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhc---ccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 013253 112 YILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHN---KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN 187 (447)
Q Consensus 112 ~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~ 187 (447)
.+++. +..++++++.+++.|++.|++.+...+...+ ++.|.. +|++..+. ...+..+|..+++.+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~--------~~~~~~~g~~~~~~~~~ 162 (398)
T TIGR00895 92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNA-LVSEYAPKRFRGTAVGL--------MFCGYPIGAAVGGFLAG 162 (398)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHH-HHHHHcCHHhhchhHhh--------HhhHHHHHHHHHHHHHH
Confidence 88876 5678899999999999999999998888766 778773 34443332 22344456666666666
Q ss_pred hhhcccccCccchhhhHHHHHHHHHHHHHHhccccCCC---C--CC----------------------chhHHHHHHHHH
Q 013253 188 LLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGD---P--SE----------------------SKDLLTQFRGAA 240 (447)
Q Consensus 188 ~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~--~~----------------------~~~~~~~~~~~~ 240 (447)
.+.+.. +|+..|.+.+.+..+.........||++.. + ++ .++..++.++..
T Consensus 163 ~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (398)
T TIGR00895 163 WLIPVF--GWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVF 240 (398)
T ss_pred HHhhcc--cceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHH
Confidence 666544 556667766544444444433344443210 0 00 000000011111
Q ss_pred HHHhcc---hhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchh
Q 013253 241 VAIASD---EKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVES 314 (447)
Q Consensus 241 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~ 314 (447)
+..+++ ++.+.......+.... +.....|.|.+.+ ..+.+. +.......++.+++.++.+++.||+++|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 316 (398)
T TIGR00895 241 KALFQGKTARITVLLWLLYFMLLVG-VYFLTNWLPKLMV-ELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV-- 316 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH--
Confidence 222222 2222222222222223 3335667774443 344443 66667778889999999999999998874
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhh
Q 013253 315 YMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRI 394 (447)
Q Consensus 315 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 394 (447)
.........+........... .+......++.+++.+...+...++.+|.+|++.|+++.|+.+.
T Consensus 317 -~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 381 (398)
T TIGR00895 317 -TALLLLLGAVFAVLVGSTLFS--------------PTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIG 381 (398)
T ss_pred -HHHHHHHHHHHHHHHHHHhhC--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 333333333322222211111 12456667788888888889999999999999999999988766
Q ss_pred h
Q 013253 395 P 395 (447)
Q Consensus 395 ~ 395 (447)
.
T Consensus 382 ~ 382 (398)
T TIGR00895 382 I 382 (398)
T ss_pred H
Confidence 4
No 58
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.94 E-value=2.5e-24 Score=207.50 Aligned_cols=333 Identities=12% Similarity=0.055 Sum_probs=196.0
Q ss_pred hhHHHHHHHHHHHhhhhhc----chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHH
Q 013253 38 FKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYI 113 (447)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~----~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~ 113 (447)
.++..+..+.+.......+ ....|.+. +.|.|+++.+++.+...+...++.++.|+++||+|||+.+..+.++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~ 102 (438)
T TIGR00712 24 LRWQVFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHhhhHHHH-HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence 3444444444444444333 33345554 469999999999888888888889999999999999999999988888
Q ss_pred HHH-HHhcC----chhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhc---ccchhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 013253 114 LSC-ITKHS----PQYKILMIGRILGGIATSLLFSAFESWLVAEHN---KRGFEQQWLSITFSKAIFLGNGLVAILSGLF 185 (447)
Q Consensus 114 i~~-l~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l 185 (447)
++. +.++. ++++.+.+.|++.|++.+...+.... .+.|.. +|++..+. ...+..+|..+++.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~-~i~~~~~~~~rg~~~~~--------~~~~~~~g~~~~~~l 173 (438)
T TIGR00712 103 AVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGR-TMVHWWSQSERGTIVSI--------WNCAHNIGGGIPPLL 173 (438)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHH-HHHHhcCcccchhHHHH--------HHHHHHhHhHHHHHH
Confidence 875 44443 56778889999999999988777655 666763 34443332 222333455555544
Q ss_pred hhhhhcccccCccchhhhHHHHHHHHHHHHHHhccccCCCC---C-C---c-------hhHHH--HHHHH-HHHHhcchh
Q 013253 186 GNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDP---S-E---S-------KDLLT--QFRGA-AVAIASDEK 248 (447)
Q Consensus 186 ~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~-~---~-------~~~~~--~~~~~-~~~~~~~~~ 248 (447)
.+...+. ..+||..|+..+++.++..+......||+++++ + + . ++..+ +.++. .+..+|++.
T Consensus 174 ~~~~~~~-~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (438)
T TIGR00712 174 VLLGMAW-FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKL 252 (438)
T ss_pred HHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCch
Confidence 4433221 235677888877666654444433444422110 0 0 0 00000 01111 124678888
Q ss_pred HHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHH
Q 013253 249 IALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSV 325 (447)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~ 325 (447)
++...+...+.....+. ...|.|.|+++..+.+. +.......+.+++++++.+++.||+++++.. . .+......
T Consensus 253 ~~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~-~-~~~~~~~~ 329 (438)
T TIGR00712 253 LWYIAIANVFVYLLRYG-VLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRG-A-TGVFFMTL 329 (438)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc-H-HHHHHHHH
Confidence 88776655555544444 56789999987666554 5666777788999999999999999654421 2 12111111
Q ss_pred HHH-HHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 326 SLL-LPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 326 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
... ........ . .+. +......+..+++.............|.+|++.|+++.|+.+..
T Consensus 330 ~~~~~~~~~~~~-~------~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 389 (438)
T TIGR00712 330 VTIAVIVYWMNP-A------GNP----LVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF 389 (438)
T ss_pred HHHHHHHHHhcC-C------Cch----HHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchH
Confidence 111 11111111 0 000 12222333334332222223345678999999999999987653
No 59
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.94 E-value=4.8e-25 Score=197.79 Aligned_cols=346 Identities=19% Similarity=0.164 Sum_probs=228.8
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCc---hhHHHHHHHH
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSP---QYKILMIGRI 132 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~---~~~~l~~~r~ 132 (447)
+|+.+.+.+|+|+|+.|.+++.....+.+.+..++.|.+.||+|.|+....+.++..+-+ ..+++. +++++++.+.
T Consensus 34 s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gl 113 (417)
T COG2223 34 SPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGL 113 (417)
T ss_pred HHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHH
Confidence 777778889999999999999999999999999999999999999999999999988865 445544 4569999999
Q ss_pred HHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccc-CccchhhhHHHHH
Q 013253 133 LGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSL-GPVAPFDAAACFL 208 (447)
Q Consensus 133 l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~-~~~~~f~~~~~~~ 208 (447)
+.|++.+...... + .++++ +++|...++. + ..++|..+...++|.+... .++ .|+....+..+..
T Consensus 114 l~G~~GasFav~m-~-~~s~~fP~~~qG~AlGI~----g-~GN~G~av~q~~~P~v~~~----~g~~~w~~~~~i~~~~l 182 (417)
T COG2223 114 LLGLAGASFAVGM-P-NASFFFPKEKQGLALGIA----G-AGNLGVAVAQLVAPLVAVA----FGFLAWRNVAGIYVVAL 182 (417)
T ss_pred HHhcccceehccc-c-cccccCChhhhhHHHHHh----c-cccccHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHH
Confidence 9999977665443 6 77777 4445544422 2 3444555555555555443 442 2555555555555
Q ss_pred HHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hH
Q 013253 209 AIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GF 285 (447)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 285 (447)
++..+..+....+.++.+.+.++.. + ...+.+.++++.|.+.+.+......... ...++|.|++++++.+. +.
T Consensus 183 ~v~~v~~~~~~~d~p~~r~~~~~~~-~--~~~~~v~~~~~~W~lsllY~~tFG~Fvg-fs~~l~~~~~~~fg~~~~~Ag~ 258 (417)
T COG2223 183 AIAAVLAWLGMNDVPEHRASVKPQL-P--AQLKAVFSNKDTWLLSLLYFATFGGFVG-FSAYLPMYLVTQFGLSPVTAGL 258 (417)
T ss_pred HHHHHHHHHHhCCChhhhccccccc-h--hHHHHHhcCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCChhhHHH
Confidence 5544444434333322111111111 1 4566788899999999988887777666 68999999999988876 56
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhh
Q 013253 286 IFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACV 365 (447)
Q Consensus 286 ~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 365 (447)
........+.+.++.+|+++||+|.+|. +...+..+.++............. ....+..+..+....+..
T Consensus 259 ~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv--~~~~f~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~l~l~~~~ 328 (417)
T COG2223 259 IAFLFPLIGALARPLGGWLSDRIGGRRV--TLAVFVGMALAAALLSLFLTGFGH--------GGSFVVFVAVFLALFVFA 328 (417)
T ss_pred HHHHHHHHHHHHHhccchhhhhccchhH--HHHHHHHHHHHHHHHHcccccccc--------CcchHHHHHHHHHHHHHh
Confidence 6677778889999999999999998883 555555555555554433322110 111235555566667777
Q ss_pred ccchhHHHHHHhhcCChhhhccccchhhhhhhH------HHHHHHHhhcccchHHHHHHHHHHHHHHHHH
Q 013253 366 GIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNI------FVCVVLYNVDAFPITVMFGMCSIFLLVASVL 429 (447)
Q Consensus 366 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (447)
+..+...+.++...+|++ .|.+.|+.....+. ..-+...+.++ .+...+.......+++...
T Consensus 329 G~GnGsvfk~Ip~if~~~-~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg-~~~~~f~~~~~~~~~a~v~ 396 (417)
T COG2223 329 GLGNGSVFKMIPVIFPKE-TGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG-SYTGAFMLLLAFYLVALVL 396 (417)
T ss_pred ccCcchheeechHHHHhh-hhHHHHHHHHhccccccchhHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHH
Confidence 777878888888888875 46666665554222 12233344444 4444444444444444433
No 60
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.94 E-value=6.3e-24 Score=199.94 Aligned_cols=300 Identities=13% Similarity=0.032 Sum_probs=192.2
Q ss_pred chhHhHhHh-hcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcC-----chhHHHHH
Q 013253 57 GPYVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS-----PQYKILMI 129 (447)
Q Consensus 57 ~~~l~~i~~-~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~-----~~~~~l~~ 129 (447)
+|..+.+.+ |+|+|++|.+++.++..+.+.+..++.|++.||+|.|+++.++.++.++.+ ..+++ ++++.+++
T Consensus 54 ~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli 133 (462)
T PRK15034 54 SAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIV 133 (462)
T ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHH
Confidence 777777765 899999999999998888888888889999999999999999999998876 55655 89999999
Q ss_pred HHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh-hhccccc----------
Q 013253 130 GRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL-LVDSFSL---------- 195 (447)
Q Consensus 130 ~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~-l~~~~~~---------- 195 (447)
.|++.|++ +..++.... .++++ ++|++..+... ...+.|..++..+.|.+... +.+..+|
T Consensus 134 ~r~l~Gig-g~~f~~~~~-~vs~wfp~~~rG~A~Gi~~----g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~ 207 (462)
T PRK15034 134 IALLCGFA-GANFASSMG-NISFFFPKAKQGSALGING----GLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSV 207 (462)
T ss_pred HHHHHHHH-HHhHHHHHH-HHHHHCCHhHhHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccch
Confidence 99999998 556666656 77777 34555555332 23344555555555554321 1111121
Q ss_pred -CccchhhhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhccccc
Q 013253 196 -GPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPAL 274 (447)
Q Consensus 196 -~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (447)
+|+..+....++.++..+..++..++.++ + ++. .++..+.+|+|+.|..++.+.+....... ..++.|.|
T Consensus 208 ~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-~---~~~----~~~~~~vlk~~~~Wllslly~~tFG~fvg-~s~~lp~~ 278 (462)
T PRK15034 208 MSLANAAWIWVPLLAIATIAAWSGMNDIAS-S---RAS----IADQLPVLQRLHLWLLSLLYLATFGSFIG-FSAGFAML 278 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccc-c---ccC----HHHHHHHhCCCchhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 24554555555444444444433332221 1 111 12344688999999998888776666554 57789998
Q ss_pred ccccCCCCchH-HHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhh
Q 013253 275 SPNDEEIPHGF-IFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSL 353 (447)
Q Consensus 275 ~~~~~~~~~~~-~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (447)
.++.++..... ......+...+.++++|+++||+|+++. +..+.....+........... . + ....+.
T Consensus 279 ~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~v--l~~~~i~~~i~~~~~~l~lp~-~------~--~~~~~~ 347 (462)
T PRK15034 279 AKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRV--TLINFIFMAIFSALLFLTLPG-T------G--SGNFIA 347 (462)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHH--HHHHHHHHHHHHHHHHHHhcc-c------c--ccHHHH
Confidence 87765432212 2233457788889999999999998873 444444333333221111111 0 0 011234
Q ss_pred HHHHHHHHHhhhccchhHHHHHHhhcCCh
Q 013253 354 QLLGFCTFEACVGIFWPSIMKMRSQYIPE 382 (447)
Q Consensus 354 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~ 382 (447)
....++...++.|..+...+-++.+.+|+
T Consensus 348 ~~~~~~~l~~~~G~gngsvfk~ip~~f~~ 376 (462)
T PRK15034 348 FYAVFMGLFLTAGLGSGSTFQMIAVIFRQ 376 (462)
T ss_pred HHHHHHHHHHHhcccchHHHHhhHHHHhh
Confidence 45555555567777777788788887774
No 61
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.94 E-value=8.4e-25 Score=206.30 Aligned_cols=327 Identities=15% Similarity=0.127 Sum_probs=204.2
Q ss_pred HHHhhhhhcchhHhH-hHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCc-hh
Q 013253 48 LMMAGDWLQGPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSP-QY 124 (447)
Q Consensus 48 ~~~~~~~~~~~~l~~-i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~-~~ 124 (447)
+.........|++|. +.+++|+|+.+.+++.+...+...+.+++.|+++||+|||+.+..+.++..++. ++++++ ++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~ 91 (366)
T TIGR00886 12 LSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSY 91 (366)
T ss_pred HHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 333344444888885 889999999999999999888888999999999999999999999999998876 667888 99
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc----cccCc
Q 013253 125 KILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS----FSLGP 197 (447)
Q Consensus 125 ~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~----~~~~~ 197 (447)
+.+++.|+++|++.+.. +...+ +++|+ ++|++..+.. ......|..+++.+++.+...+.+. ...+|
T Consensus 92 ~~~~~~~~~~g~~~~~~-~~~~~-~~~~~~~~~~r~~~~~~~----~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w 165 (366)
T TIGR00886 92 SVLLLLRLFIGIAGGSF-ASCMP-WISFFFPKKIQGTALGLA----AGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAW 165 (366)
T ss_pred HHHHHHHHHHHHhchhh-HhHHH-HHHHhcCHhhhhHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 99999999999986654 44445 77776 3344444322 2233445556666665554433221 11245
Q ss_pred cchh-hhHHHHHHHHHHHHHHhccccCCCCCCchh-HH--------HHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhh
Q 013253 198 VAPF-DAAACFLAIGMVIILSSWTENYGDPSESKD-LL--------TQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFV 267 (447)
Q Consensus 198 ~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (447)
|+.| ...+.+..+.........+|++++++++++ .. ++..+..++.+++|+++...+...+.....+. .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 244 (366)
T TIGR00886 166 GWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLG-V 244 (366)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHH-H
Confidence 5556 332333332222222233332211111110 00 00111345567778877766655554444343 5
Q ss_pred hhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 013253 268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS 344 (447)
Q Consensus 268 ~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (447)
..+.|.|.++.++.+. +.......+..++++++.+++.||+|+|+. ..........+..+.......
T Consensus 245 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~--~~~~~~~~~~~~~~~~~~~~~-------- 314 (366)
T TIGR00886 245 SSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARK--LLMSFLGVAMGAFLVVLGLVS-------- 314 (366)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchh--HHHHHHHHHHHHHHHHhcCCC--------
Confidence 6778888877666655 556667778889999999999999998873 333333333322222211111
Q ss_pred CccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 345 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+. ..+.......+..+..+...+..++...+..| +++++++|+.+..
T Consensus 315 ~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~ 361 (366)
T TIGR00886 315 PL---SLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAI 361 (366)
T ss_pred cc---hHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHh
Confidence 00 01233445555666777777778888888887 5789988886654
No 62
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.94 E-value=7.7e-24 Score=204.23 Aligned_cols=356 Identities=18% Similarity=0.212 Sum_probs=237.0
Q ss_pred HHHHHHHHHHHhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH--H
Q 013253 40 NNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC--I 117 (447)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~--l 117 (447)
+.+.....+..+++++....++-+..+..-|+..++.+.....+...+.++++|.++||++|||+++.+.++.++.. +
T Consensus 13 r~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L 92 (524)
T PF05977_consen 13 RRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLL 92 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH
Confidence 33556667778888888665555566677788899999999999899999999999999999999999988775532 2
Q ss_pred --Hhc--CchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 013253 118 --TKH--SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF 193 (447)
Q Consensus 118 --~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~ 193 (447)
... ..+.+.+++.-++.|++.+...|+.++ ++.|..++....+... .......+...+||.+++.+....
T Consensus 93 ~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A-~ip~lV~~~~L~~A~a-----l~s~~~niar~iGPalgG~Lva~~ 166 (524)
T PF05977_consen 93 AVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQA-IIPELVPKEDLPAANA-----LNSISFNIARIIGPALGGILVAFF 166 (524)
T ss_pred HHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccHhhHHHHHH-----HHHHHHHHHHhccchHHHHHHHHH
Confidence 222 357889999999999999999999877 8888755555443221 222334455566666666655433
Q ss_pred ccCccchhhhHHHHHHHHHHHHHHhccc-cCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhccc
Q 013253 194 SLGPVAPFDAAACFLAIGMVIILSSWTE-NYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTP 272 (447)
Q Consensus 194 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (447)
|- ...|.+.++..++....+. .+++ .++++.++++..+.+++..+.+.++|..........++...... ....+|
T Consensus 167 G~--~~~f~inalsfl~~i~~l~-~~~~~~~~~~~~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a-~~aLlP 242 (524)
T PF05977_consen 167 GA--AAAFLINALSFLISILALL-RWKPPPPPSSLPRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASA-VWALLP 242 (524)
T ss_pred HH--HHHHHHHHHHHHHHHHHHH-HccccccccccchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhH-HHHhhh
Confidence 33 4556666555444433333 3333 22222233344566677777777777766554443333333222 345678
Q ss_pred ccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccc
Q 013253 273 ALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISF 349 (447)
Q Consensus 273 ~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (447)
.+.++..+.++ |.+.+..++++++|.++.+++.+|+++++ .+..+....+++.....+....
T Consensus 243 l~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~--lv~~~~~~~a~~~~~lal~~~~------------- 307 (524)
T PF05977_consen 243 LFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRR--LVLLASLLFALALLLLALSPSF------------- 307 (524)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcch--hhHHHHHHHHHHHHHHhcchHH-------------
Confidence 88877776655 78888999999999999999999987766 2444444444444443332222
Q ss_pred chhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh------hhHHHHHHHHhhcccchHHHHHHHHHHH
Q 013253 350 SGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMFGMCSIFL 423 (447)
Q Consensus 350 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 423 (447)
+...+.+++.|++.........+..++..|++.||++++++++. .+.++.+.+.+.. +....+..+++..
T Consensus 308 --~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~--g~~~al~~a~~~l 383 (524)
T PF05977_consen 308 --WLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF--GVRTALLIAGAAL 383 (524)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CHHHHHHHHHHHH
Confidence 46677788888888888888999999999999999999988764 2334445555543 3333344444333
Q ss_pred H
Q 013253 424 L 424 (447)
Q Consensus 424 ~ 424 (447)
+
T Consensus 384 l 384 (524)
T PF05977_consen 384 L 384 (524)
T ss_pred H
Confidence 3
No 63
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.94 E-value=2.3e-24 Score=202.30 Aligned_cols=305 Identities=15% Similarity=0.112 Sum_probs=195.7
Q ss_pred cchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 013253 56 QGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGG 135 (447)
Q Consensus 56 ~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~l~~~~~~~~~l~~~r~l~G 135 (447)
.+|.+|.+.+|+|.|+++.|+..+...+...+++++.|+++||+||||++..+.++..++.+....++.+.+++.|++.|
T Consensus 19 ~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 98 (355)
T TIGR00896 19 VGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIRSAPGTALLFAGTALIG 98 (355)
T ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 38899999999999999999999999888889999999999999999999999888877653337788999999999999
Q ss_pred hhhhhhhhhhhHHHHhhhc--ccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHH
Q 013253 136 IATSLLFSAFESWLVAEHN--KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV 213 (447)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~~--~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~ 213 (447)
++.+...+.... ++.|.. +|++..+ ..+ .+..+|..+++.+++.+.+..+++||..|...+...++...
T Consensus 99 ~g~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~----~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~ 169 (355)
T TIGR00896 99 VGIAIINVLLPS-LIKRDFPQRVGLMTG----LYS----MALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL 169 (355)
T ss_pred HHHHHHhccchH-HHHHhCcchhhHHHH----HHH----HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 999987776644 666652 3333322 222 23345555555555555544444577777665544433322
Q ss_pred HHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHH
Q 013253 214 IILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATF 290 (447)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 290 (447)
. ..|+.+++++++++. + +...++.+|+|+.+.......+.....+. ...|.|.+.++ .+.+. +...+..
T Consensus 170 ~---~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lp~~~~~-~g~~~~~~g~~~~~~ 241 (355)
T TIGR00896 170 A---WIPQVRRRVAANQTT-T--RLTPVRIWRSPLAWQVTVFFGLQSGLYYS-LIGWLPAILIS-HGASAATAGSLLALM 241 (355)
T ss_pred H---HhhhhccccCCCCCC-C--CCCCchhhcCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 2 223322111111110 0 11234567778777665554444444333 46788888865 35544 6677788
Q ss_pred HHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchh
Q 013253 291 MLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWP 370 (447)
Q Consensus 291 ~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 370 (447)
.++.+++++..|++.||+++|+. .+..+..+..++.......... .......+.|++.+..+|
T Consensus 242 ~~~~i~~~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~g~~~g~~~~ 304 (355)
T TIGR00896 242 QLAQAASALLIPALARRVKDQRG-IVAVLAVLQLVGLCGLLFAPMH----------------GLWAWALVLGLGQGGAFP 304 (355)
T ss_pred HHHHHHHHHhHHHHHhhhccchH-HHHHHHHHHHHHHHHHHHhhhh----------------HHHHHHHHHHHhhhhHhH
Confidence 89999999999999999965442 2333333333333322221111 111245677888888888
Q ss_pred HHHHHHhhcC-Chhhhccccchhhh
Q 013253 371 SIMKMRSQYI-PEEARSTIMNFFRI 394 (447)
Q Consensus 371 ~~~~~~~~~~-p~~~r~~~~g~~~~ 394 (447)
...+...+.. +++.+++..++.+.
T Consensus 305 ~~~~~~~~~~~~~~~~g~~~~~~~~ 329 (355)
T TIGR00896 305 LALTLIGLRSRQAAQAAALSAMAQS 329 (355)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHH
Confidence 8777766554 45666777776543
No 64
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.93 E-value=8.7e-25 Score=207.07 Aligned_cols=315 Identities=14% Similarity=0.091 Sum_probs=202.1
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G 135 (447)
.+.+|.+.+++|.|+.+.|++.+...+...+++++.|+++||+|||+.+..+.++.+++. +.+++++++.+++.|++.|
T Consensus 15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 94 (379)
T TIGR00881 15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNG 94 (379)
T ss_pred hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 666788889999999999999998888888889999999999999999999999998876 6688999999999999999
Q ss_pred hhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhh-hhhhhhhcccccCccchhhhHHHHHHHH
Q 013253 136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSG-LFGNLLVDSFSLGPVAPFDAAACFLAIG 211 (447)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~-~l~~~l~~~~~~~~~~~f~~~~~~~~~~ 211 (447)
++.+...+...+ ++.|. ++|++..+.... +..+|..+++ .++..+.+. ++|+..|.+.+.+.++.
T Consensus 95 ~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~--------~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 163 (379)
T TIGR00881 95 IFQGMGWPPCGR-TVTKWFSRSERGTWVSFWNC--------SHNVGGGLLPPLVLFGIAEL--YSWHWVFIVPGIIAIIV 163 (379)
T ss_pred hhccccCCchHH-HHHHhcCHhhheeeEeehhc--------cchhHHHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHH
Confidence 999998888766 77776 344554443222 2334555555 234444433 45667777766655554
Q ss_pred HHHHHHhccccCCCC----------CC-------chhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhccccc
Q 013253 212 MVIILSSWTENYGDP----------SE-------SKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPAL 274 (447)
Q Consensus 212 ~~~~~~~~~~~~~~~----------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (447)
.+......+|+++++ ++ .++..++.+...++.+++|.++...+...+....... ...+.|.|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 242 (379)
T TIGR00881 164 SLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTG-ILDWSPLY 242 (379)
T ss_pred HHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 444433333322110 00 0000011122345667788887776665555554444 56788888
Q ss_pred ccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccch
Q 013253 275 SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSG 351 (447)
Q Consensus 275 ~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (447)
.++..+.+. +.......++.++++++.+++.||..+|+................. ...... . .+ .
T Consensus 243 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~------~~----~ 310 (379)
T TIGR00881 243 LTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLL-VYWLNP-A------AN----P 310 (379)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH-HHhcCc-c------hh----H
Confidence 877666654 6667777888999999999999986433321121111111111111 111110 0 00 1
Q ss_pred hhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 352 SLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 352 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+......++.+.......+....+..|..|++.|+++.|+.+..
T Consensus 311 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 354 (379)
T TIGR00881 311 LMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFF 354 (379)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHh
Confidence 13334444555544445566678899999999999999887764
No 65
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.93 E-value=4.4e-24 Score=200.50 Aligned_cols=322 Identities=15% Similarity=0.049 Sum_probs=201.6
Q ss_pred cchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhcc-----CchhHH-HHHHHHHHHHH-HHhcC---chhH
Q 013253 56 QGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-----GRKRAC-VTYCLTYILSC-ITKHS---PQYK 125 (447)
Q Consensus 56 ~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~-----Grr~~l-~~~~~~~~i~~-l~~~~---~~~~ 125 (447)
..+.+|.+.+|+|+|.+|+|...... ....+ ++++|+++||+ ||||.+ +.+.+..++.. ..++. .+.+
T Consensus 7 ~~~~~~~~~~~~g~s~~~~g~~~~~~-~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~ 84 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSLKTIGFFSLVG-LPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLP 84 (356)
T ss_pred HHhHHHHHHHHcCCCHHHHHHHHHHH-HHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHH
Confidence 36677889999999999999885443 32333 77899999998 899975 56666666654 44565 4566
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc------cC
Q 013253 126 ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS------LG 196 (447)
Q Consensus 126 ~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~------~~ 196 (447)
.+....++.+.+.+...+...+ ++.|. ++|++..+.. ..+..+|..+++.+++.+.+..+ |+
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~~a-~~~~~~~~~~r~~~~~~~--------~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~ 155 (356)
T TIGR00901 85 LLAGLAFLIAFFSATQDIALDA-WRLEILSDEELGYGSTIY--------IVGYRAGMLLSGSLALVLASPEFANTGLITL 155 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhCCHhhhchHHHHH--------HHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 6777788888888888787766 77777 3444433322 23344555555555555544333 55
Q ss_pred ccchhhhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchh---HHHHHHHHHhhhhhhhhhhhhcccc
Q 013253 197 PVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEK---IALLGAIQSLFEGSMYTFVFLWTPA 273 (447)
Q Consensus 197 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (447)
||.+|.+.++..++..+......||++++++++++..++.++..++++++|. .+...+...+.....+. ...+.|.
T Consensus 156 wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 234 (356)
T TIGR00901 156 WGYIFFWTALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSA-ATVLTTL 234 (356)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 8999988887766655444433455332211111112223345566677664 55554444444444333 5677888
Q ss_pred cccccCCCCc---hHHHHHHH-HHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccc
Q 013253 274 LSPNDEEIPH---GFIFATFM-LASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISF 349 (447)
Q Consensus 274 ~~~~~~~~~~---~~~~~~~~-i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (447)
|.++ .+.+. +......+ +..+++.++++++.||+|+|+. +..+..+..+.............+. +....
T Consensus 235 ~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 307 (356)
T TIGR00901 235 FLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYA--LLLFGIVQALTNAGFVWLASNGHHD----GITFP 307 (356)
T ss_pred HHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHHHHHHHHHhcCccc----ccccc
Confidence 8776 66665 44444444 5678899999999999998873 4444444443333322221110000 00000
Q ss_pred chhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhhh
Q 013253 350 SGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPL 396 (447)
Q Consensus 350 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~ 396 (447)
..+......++.+++.+..++...++.+|..|+++|++.+|+.+...
T Consensus 308 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 354 (356)
T TIGR00901 308 HLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLS 354 (356)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 12345566677788899999999999999999999999999876543
No 66
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.93 E-value=7.3e-24 Score=201.81 Aligned_cols=326 Identities=17% Similarity=0.207 Sum_probs=192.4
Q ss_pred hhHhHhHhhcC--CCCcchhHHHH-----HHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhH----
Q 013253 58 PYVYYLYSTYG--FGKGEIGQLFI-----AGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYK---- 125 (447)
Q Consensus 58 ~~l~~i~~~~g--~s~~~~g~~~~-----~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~---- 125 (447)
+..+.+.+++. .++.+.+...+ ..++...+++++.|+++||+||||++..+.++..++. +++++++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGI 93 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHH
Confidence 33445555543 45566664333 3344445677899999999999999999999998876 668888875
Q ss_pred ----HHHHHHHHHHhhhhhhhhhhhHHHHhhhc---ccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc------c
Q 013253 126 ----ILMIGRILGGIATSLLFSAFESWLVAEHN---KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD------S 192 (447)
Q Consensus 126 ----~l~~~r~l~G~~~~~~~~~~~~~~i~~~~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~------~ 192 (447)
.+++.|+++|++.+...+.... ++.|.. +|++..+. ... +..+|..+++.++..+.. .
T Consensus 94 ~~~~~~~~~r~l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~----~~~----~~~~G~~i~~~~~~~~~~~~~~~~~ 164 (394)
T TIGR00883 94 WAPILLLLARLIQGFSLGGEWGGAAL-YLAEYAPPGKRGFYGSF----QQV----GAPVGLLLAALTVLLLSYLLGDDAL 164 (394)
T ss_pred HHHHHHHHHHHHHHhhccccccccHH-HhhhcCCcccchHHHHH----HHH----HHHHHHHHHHHHHHHHHHhcCHHHh
Confidence 4889999999999998888755 788873 33333332 222 333444444433322211 1
Q ss_pred cccCccchhhhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchh--HHHHHHHHHhhhhhhhhhhhhc
Q 013253 193 FSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEK--IALLGAIQSLFEGSMYTFVFLW 270 (447)
Q Consensus 193 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 270 (447)
..++||.+|.+...+.++..... ...||++++++++++ .++.+++.++.+++++ ++.......+.... +.....+
T Consensus 165 ~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 241 (394)
T TIGR00883 165 LEWGWRIPFLVSAVLVLIGLYLR-RNLEETPVFEKAQEK-HKKKRGPIRETLTKHRKPFLLGLGLVIATTTT-FYLITTY 241 (394)
T ss_pred hccchHHHHHHHHHHHHHHHHHH-HhcCCChhHHHHHhc-cccccCCHHHHHHhchHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 24678888887666555443332 244443321111100 0111122334444444 44443333333333 3335678
Q ss_pred ccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHH-HHHHHhhhccCCCCCCCCc
Q 013253 271 TPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSL-LLPIVTSFLVAPSNVKSGG 346 (447)
Q Consensus 271 ~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 346 (447)
.|.|.++..+.+. +.......++..++.++.+++.||+|||+. +.....+..... ......... +
T Consensus 242 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~--~~~~~~~~~~~~~~~~~~~~~~--------~- 310 (394)
T TIGR00883 242 LPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPV--LIIFTVLAALLAVPLLMALLDS--------G- 310 (394)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH--HHHHHHHHHHHHHHHHHHHhcC--------C-
Confidence 8888866556554 555666778899999999999999998873 222222222211 111111111 0
Q ss_pred cccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhh-hh------hhHHHHHHHHhhcc
Q 013253 347 ISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFR-IP------LNIFVCVVLYNVDA 409 (447)
Q Consensus 347 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~------~~~~~~~~l~~~~~ 409 (447)
..+......++.+++.+...+..+++..|.+|++.|+++.++.. .. .++.+++.+.+..+
T Consensus 311 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 311 ---SFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred ---chHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 01244555677777888888889999999999999999988742 21 23345555555544
No 67
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.93 E-value=8.3e-24 Score=206.87 Aligned_cols=319 Identities=15% Similarity=0.131 Sum_probs=183.8
Q ss_pred chhHhHhHhhcCCC--------CcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhc---Cchh
Q 013253 57 GPYVYYLYSTYGFG--------KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH---SPQY 124 (447)
Q Consensus 57 ~~~l~~i~~~~g~s--------~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~---~~~~ 124 (447)
.+.++.+.++++.+ ..+.+++.+...+...++++++|+++||+|||+++..+.++..++. ++.+ ..++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (481)
T TIGR00879 48 GGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSV 127 (481)
T ss_pred hhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 66667777777666 7899999999999888999999999999999999999999998875 4433 4456
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhh---hhhhcccccCcc
Q 013253 125 KILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG---NLLVDSFSLGPV 198 (447)
Q Consensus 125 ~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~---~~l~~~~~~~~~ 198 (447)
+.+++.|+++|++.+...+.... ++.|. ++|++..+.. ..+..+|..+++.++ ....+ ..+||
T Consensus 128 ~~~~~~r~l~G~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~--------~~~~~~G~~~~~~~~~~~~~~~~--~~~w~ 196 (481)
T TIGR00879 128 EMLIVGRVLLGIGVGIASALVPM-YLSEIAPKALRGALTSLY--------QLAITFGILVAYGFGSGKVSLNN--TLGWR 196 (481)
T ss_pred HHHHHHHHHHHhhhhHHHhHHHH-HHHccCChhhhhhhhhHH--------HHHHHHHHHHHHHHHHHhhcCCC--CccHH
Confidence 68999999999999999887755 88887 3344433322 223445555555555 33332 34667
Q ss_pred chhhhHHHHHHHHHHHHHHhccccCC------CCCCchhHHHH-----------HH-----------------HHHHHHh
Q 013253 199 APFDAAACFLAIGMVIILSSWTENYG------DPSESKDLLTQ-----------FR-----------------GAAVAIA 244 (447)
Q Consensus 199 ~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-----------~~-----------------~~~~~~~ 244 (447)
..|.+.+...++..+.. ...||++. +.++.++..++ .+ +.+++.+
T Consensus 197 ~~f~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (481)
T TIGR00879 197 IPLGLQLIPAGLLFLGL-FFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLF 275 (481)
T ss_pred HHHHHHHHHHHHHHHHH-hcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 77877555444433332 34455321 00000000000 00 0001111
Q ss_pred cc-----hhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHH
Q 013253 245 SD-----EKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYM 316 (447)
Q Consensus 245 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l 316 (447)
+. ++.+.......+...........+.|.+.++ .+.+. +.......++.+++.++.+++.||++||+. +
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~--~ 352 (481)
T TIGR00879 276 SSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPL--L 352 (481)
T ss_pred hcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH--H
Confidence 11 1222222222222222222235556665543 34433 556666778889999999999999998873 4
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccc-hhHHHHHHhhcCChhhhccccchhhhh
Q 013253 317 QIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIF-WPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
..+..+..++............+. .+ ....+.......+...+.+.. .+....+..|.+|++.|+++.++.+..
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 427 (481)
T TIGR00879 353 LIGAAGMAICLFVLGILGASFVTG----SS-KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAA 427 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCC----cc-cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHH
Confidence 444444333333332111110000 00 000112233333333333333 366778889999999999999887765
No 68
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.93 E-value=1.7e-23 Score=198.09 Aligned_cols=329 Identities=13% Similarity=0.088 Sum_probs=212.0
Q ss_pred HHHHHhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCch----hHHHHHHHHHHHHH-HHhc
Q 013253 46 YSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRK----RACVTYCLTYILSC-ITKH 120 (447)
Q Consensus 46 ~~~~~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr----~~l~~~~~~~~i~~-l~~~ 120 (447)
++....+.++..|++|...+|+|.|..++|++.+...+...+.++++|+++||+||| +.+.+..... .. ....
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~ 90 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG 90 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence 444456677779999999999999999999999999888889999999999999994 3332222111 22 2345
Q ss_pred CchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh-cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccc
Q 013253 121 SPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVA 199 (447)
Q Consensus 121 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~ 199 (447)
.++++.+++.|++.|++.+...|...+ +..++ ++|++..+..+. +..+|..++|.+++.+.++. +||.
T Consensus 91 ~~~~~~l~i~~~l~g~~~~~~~~~~~a-~~~~~~~~~~~a~~~~~~--------~~~lg~~igp~lgg~l~~~~--g~~~ 159 (382)
T PRK11128 91 AHSFWLLFVAIGLFNLFFSPLVPLTDA-LANTWQKQIGLDYGKVRL--------WGSIAFVIGSALTGKLVSWF--GEQA 159 (382)
T ss_pred cccHHHHHHHHHHHHHHHcccccHHHH-HHHHHHhhccCCcchHHH--------HHHHHHHHHHHHHHHHHHHc--ChhH
Confidence 788999999999999998888887655 66655 444544443222 22366777777777777544 5677
Q ss_pred hhhhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccC
Q 013253 200 PFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDE 279 (447)
Q Consensus 200 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (447)
.|+..+...++..+... ..||++++++++++ .++..++.++++|+|+++.......+....... ...+.|.|.++ .
T Consensus 160 ~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~-~ 235 (382)
T PRK11128 160 ILWILTAGVASMLLGQL-LRPTIMPQGESRQQ-ESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAA-YYGFSAIYWQA-A 235 (382)
T ss_pred HHHHHHHHHHHHHHHHH-ccCCCCCccccccc-cccccchHHHHHcChhHHHHHHHHHHHHHHhHh-HHHHHHHHHHH-C
Confidence 77766654443333222 34443322211111 111123567888999888776655555444322 34556667654 4
Q ss_pred CCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHH
Q 013253 280 EIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLL 356 (447)
Q Consensus 280 ~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (447)
+.+. |...+...++.++...+.+++.||+++|+. +..+.....+.......... .+...+
T Consensus 236 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~--l~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 298 (382)
T PRK11128 236 GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDL--LLLSAICGVVRWGLMGSTTA---------------LPWLIV 298 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHHhhhh---------------HHHHHH
Confidence 5444 666677778888899999999999988873 44444444433332222111 135566
Q ss_pred HHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh-------hhHHHHHHHHhhcc
Q 013253 357 GFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP-------LNIFVCVVLYNVDA 409 (447)
Q Consensus 357 ~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-------~~~~~~~~l~~~~~ 409 (447)
..++.+++.+...+....+..+. +++++++..+..+.. .+..+++.+.+..+
T Consensus 299 ~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g 357 (382)
T PRK11128 299 IQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG 357 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 78888888888888888888887 555567777765522 23456666666644
No 69
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.93 E-value=2.8e-23 Score=197.41 Aligned_cols=314 Identities=9% Similarity=0.063 Sum_probs=206.6
Q ss_pred HhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HH---hcCchhH
Q 013253 50 MAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT---KHSPQYK 125 (447)
Q Consensus 50 ~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~---~~~~~~~ 125 (447)
.+.+++..|++|.+.+++|.|+.|.|++.+..+....+.+++.|++.||+|||+++..+..+.+++. +. ...++++
T Consensus 16 G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~ 95 (410)
T TIGR00885 16 GFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYT 95 (410)
T ss_pred HHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 3455666899999999999999999999999998888999999999999999999999999998876 32 3357899
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc-----------
Q 013253 126 ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD----------- 191 (447)
Q Consensus 126 ~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~----------- 191 (447)
.+++.|++.|+|.+...+...+ ++.+. ++++++.+.. .....+|..+|+.+++.+.....+
T Consensus 96 ~~l~~~~l~G~g~g~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~ 170 (410)
T TIGR00885 96 LFLVGLFILTAGLGFLETAANP-YILVMGPESTATRRLNLA----QSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLS 170 (410)
T ss_pred HHHHHHHHHHhhHHHHHhhhhH-HHHHHCCHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcC
Confidence 9999999999999999888766 66555 3344444433 333444555555554443211100
Q ss_pred ---------ccccCccchhhhHHHHHHHHHHHHH-HhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhh
Q 013253 192 ---------SFSLGPVAPFDAAACFLAIGMVIIL-SSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEG 261 (447)
Q Consensus 192 ---------~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (447)
....+||.+|.+.+.+.++..+... .+.||.++++++ + ++..+..++.+|+|+++...+...+...
T Consensus 171 ~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~l~~f~yvg 246 (410)
T TIGR00885 171 PEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHSDAK-Q---ISFSASLSRLARIRHYREGVIAQFFYVG 246 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc-c---ccchhhHHHHHhChhHHHHHHHHHHHHH
Confidence 0113578888877776655443332 234432211111 1 1112234467788888776666555555
Q ss_pred hhhhhhhhccccccccc-CCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhcc
Q 013253 262 SMYTFVFLWTPALSPND-EEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLV 337 (447)
Q Consensus 262 ~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 337 (447)
.... ...+.+.|.++. .+.+. +...+.......+|+++++++.||+++|+ .+........++..+.......
T Consensus 247 ~e~~-~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~--~l~i~~~~~~~~~ll~~~~~~~- 322 (410)
T TIGR00885 247 VQIM-CWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHK--VLMAYAIIGMALCLGSIFAGGH- 322 (410)
T ss_pred HHHH-HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHHHHHHHcCCh-
Confidence 5444 456777777542 23333 33344555778999999999999998776 2444444433333332221111
Q ss_pred CCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccch
Q 013253 338 APSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNF 391 (447)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~ 391 (447)
.....+.+.+++.+..+|..+++..+..+++.+..+.++
T Consensus 323 ---------------~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l 361 (410)
T TIGR00885 323 ---------------VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGL 361 (410)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 346677788888888999999999999998876544443
No 70
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.93 E-value=6.1e-23 Score=195.77 Aligned_cols=369 Identities=15% Similarity=0.038 Sum_probs=215.4
Q ss_pred HHHHHHHHhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhcc-----Cchh-HHHHHHHHHHHHH
Q 013253 43 LLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-----GRKR-ACVTYCLTYILSC 116 (447)
Q Consensus 43 ~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~-----Grr~-~l~~~~~~~~i~~ 116 (447)
+.+++.-....++..+.+|...++.|+|.+|+|.+...... .+..+++|+++||+ |||| .+..+..+.+++.
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~ 82 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI 82 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence 33444444556666888889999999999999988665554 47788999999999 8876 6777777777664
Q ss_pred -HHhcC---chhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 013253 117 -ITKHS---PQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS 192 (447)
Q Consensus 117 -l~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~ 192 (447)
..++. ++++.+++..++.++..+...+...+ ++.|..+++++... +.....|..+|..+++.++..+.+.
T Consensus 83 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a-l~~~~~~~~~r~~~-----~~~~~~g~~~g~i~g~~l~~~l~~~ 156 (402)
T PRK11902 83 AAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDA-YSTDVLHPEERGAG-----AAVKVLGYRLAMLVSGGLALWLADR 156 (402)
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcChhhhhHH-----HHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 44554 45777888888888888888888766 88887333322221 1122234555666666666665542
Q ss_pred cccCccchhhhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhccc
Q 013253 193 FSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTP 272 (447)
Q Consensus 193 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (447)
.++||..|++.+++.++..+.. ...||++.+++++++..++..+..++++|+|.++.......+....... ...+.+
T Consensus 157 -~~gw~~~f~i~a~~~l~~~l~~-~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~-~~~~~~ 233 (402)
T PRK11902 157 -VLGWGNTYLLMAGLMLAGALTT-LWAPEPEVPARPPRSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAF-AGSLST 233 (402)
T ss_pred -ccCHHHHHHHHHHHHHHHHHHH-HhcCCCcccccccchhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHH-HHHHHH
Confidence 2478888888777665544433 3455543332222222223445667788998887765555444433222 122333
Q ss_pred ccccccCCCCc---hHHHHHHH-HHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccc
Q 013253 273 ALSPNDEEIPH---GFIFATFM-LASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGIS 348 (447)
Q Consensus 273 ~~~~~~~~~~~---~~~~~~~~-i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (447)
.+..+..+.+. +......+ ++.+++..+.+++.||+++|+. +........+............+ +
T Consensus 234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~--l~~~~~~~~l~~l~~~~~~~~~~-------~-- 302 (402)
T PRK11902 234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRS--LMLFGVLQAVSNLGYWVLAVTPK-------H-- 302 (402)
T ss_pred HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHhcCC-------c--
Confidence 34555556655 44443433 4578899999999999998773 33333332222221111111100 0
Q ss_pred cchhhHHHHH----HHHHhhhccchhHHHHHHhhcCChhhhccccchh---hhhhhHHHHHHHHhhcccchHHHHHHHHH
Q 013253 349 FSGSLQLLGF----CTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFF---RIPLNIFVCVVLYNVDAFPITVMFGMCSI 421 (447)
Q Consensus 349 ~~~~~~~~~~----~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 421 (447)
.+...... +..+++.+...+....++++..|.+.++...+.. +...+. +++.+.+.. ++...+...++
T Consensus 303 --~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~G~l~~~~--G~~~~f~~~~~ 377 (402)
T PRK11902 303 --LWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGP-TSGYLVEAY--GWPGFYLMTVV 377 (402)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh--ChHHHHHHHHH
Confidence 12233333 3455566666788888888888888776433322 212333 466666664 44555555555
Q ss_pred HHHHHHHHhhhhhhhhc
Q 013253 422 FLLVASVLQRRLMVIAD 438 (447)
Q Consensus 422 ~~~~~~~~~~~~~~~~~ 438 (447)
+.++..++..+.+++.+
T Consensus 378 ~~~~~~~~~~~~~~~~~ 394 (402)
T PRK11902 378 IALPGLALLWLMRGTIG 394 (402)
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 55554444444444333
No 71
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.93 E-value=2.8e-23 Score=198.24 Aligned_cols=347 Identities=12% Similarity=0.041 Sum_probs=210.1
Q ss_pred HHHHHHHhhhhhcchhHh-HhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCc-hhHHHHHHHHHHHHH-HHhc
Q 013253 44 LVYSLMMAGDWLQGPYVY-YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR-KRACVTYCLTYILSC-ITKH 120 (447)
Q Consensus 44 ~~~~~~~~~~~~~~~~l~-~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Gr-r~~l~~~~~~~~i~~-l~~~ 120 (447)
...++.+...+...|.++ .+.+++|+|..|+|++.+...+...++++++|+++||+|| |+++.++.++..++. +..+
T Consensus 9 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~ 88 (418)
T TIGR00889 9 FMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQ 88 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555544444 4557799999999999999999999999999999999965 778888887776665 6678
Q ss_pred CchhHHHHHHHHHHHhhhhhhhhhhhHHH---Hh----h---hcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 013253 121 SPQYKILMIGRILGGIATSLLFSAFESWL---VA----E---HNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLV 190 (447)
Q Consensus 121 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~---i~----~---~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~ 190 (447)
.++++.+++.|++.|++.+...+...+.. .. | ..+|.+. ++ . +|..+++.+++.+.
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~-------~G---~----lG~~ig~~l~g~l~ 154 (418)
T TIGR00889 89 VTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRV-------MG---T----IGFIAAMWAVSLLD 154 (418)
T ss_pred hcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeee-------eh---h----HHHHHHHHHHHHhc
Confidence 89999999999999998777777665522 11 1 1122221 11 1 34444455555442
Q ss_pred cccccCccchhhhHHHHHHHHHHHHHHhccccCCCCCCc-hhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhh
Q 013253 191 DSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSES-KDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFL 269 (447)
Q Consensus 191 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (447)
....| .+|++.+++.++..+. ....||++++++++ .+..+......++.+|+|+++.+.+...+...... ....
T Consensus 155 --~~~~~-~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~-~~~~ 229 (418)
T TIGR00889 155 --IELSN-IQLYITAGSSALLGVF-ALTLPDIPVAKSTAKMSIKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQ-ITNI 229 (418)
T ss_pred --ccchh-HHHHHHHHHHHHHHHH-HhcCCCCCCCccccccCHHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHH-HHHH
Confidence 12223 3455555555544433 33556653222211 11111111234467888887766555554433322 2344
Q ss_pred ccccccccc-CC--------CCc-hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCC
Q 013253 270 WTPALSPND-EE--------IPH-GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAP 339 (447)
Q Consensus 270 ~~~~~~~~~-~~--------~~~-~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 339 (447)
+.|.+.++. .+ .+. +...+...+..+++.+..+++.||+|+|+. +..+..+..+...........
T Consensus 230 ~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~--l~~~~~~~~v~~~l~~~~~~~--- 304 (418)
T TIGR00889 230 FGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKV--MLLSLVAWALRFGFFAYGDPE--- 304 (418)
T ss_pred hHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH--HHHHHHHHHHHHHHHHHcCcc---
Confidence 556555432 11 122 677777788899999999999999998873 444444444443333221110
Q ss_pred CCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhh-hh------hhHHHHHHHHhhcc---
Q 013253 340 SNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFR-IP------LNIFVCVVLYNVDA--- 409 (447)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~------~~~~~~~~l~~~~~--- 409 (447)
....+..++..++.+++.+...+....++.|.+|++.|++++|+.+ .. .++.+++.+.+..+
T Consensus 305 --------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~ 376 (418)
T TIGR00889 305 --------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYG 376 (418)
T ss_pred --------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccc
Confidence 0001234556777888888788888999999999999999998886 32 23455566655533
Q ss_pred -cchHHHHHHHHHH
Q 013253 410 -FPITVMFGMCSIF 422 (447)
Q Consensus 410 -~~~~~~~~~~~~~ 422 (447)
.++...+..+++.
T Consensus 377 ~~~~~~~f~~~~~~ 390 (418)
T TIGR00889 377 TFDWQTMWLFFAGY 390 (418)
T ss_pred CCchHHHHHHHHHH
Confidence 2344444444333
No 72
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.92 E-value=2.1e-22 Score=195.91 Aligned_cols=329 Identities=14% Similarity=0.058 Sum_probs=197.7
Q ss_pred HHHHHHHHhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhcc-----CchhH-HHHHHHHHHHHH
Q 013253 43 LLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-----GRKRA-CVTYCLTYILSC 116 (447)
Q Consensus 43 ~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~-----Grr~~-l~~~~~~~~i~~ 116 (447)
+.+++.......+..+.+|...++.|.|.+++|........ .+..+++|+++||+ ||||. +..+.+..+++.
T Consensus 18 ~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~ 95 (491)
T PRK11010 18 LILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQA--YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAI 95 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHH
Confidence 33334444455566888889999999999999986333332 25677899999999 99986 556666666664
Q ss_pred -HHhcC---chhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 013253 117 -ITKHS---PQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS 192 (447)
Q Consensus 117 -l~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~ 192 (447)
.+++. ++++.+.+.+++.|++.+...+...+ +..|+.+++++.. .......|..+|..+++.++.++.+.
T Consensus 96 ~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a-~~~~~~~~~~rg~-----~~~i~~~g~~lG~llg~~l~~~l~~~ 169 (491)
T PRK11010 96 AAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDA-WKTDVLPAEERGA-----GAAISVLGYRLAMLVSGGLALWLADR 169 (491)
T ss_pred HHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcChhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44453 57888999999999999988888756 8888733323222 12223345556666666666666642
Q ss_pred cccCccchhhhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhccc
Q 013253 193 FSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTP 272 (447)
Q Consensus 193 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (447)
.++||..|++.+.+.++..+... ..||++++++++++..++..++.++.+++++.+.......+....... ...+.+
T Consensus 170 -~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~-~~~~~~ 246 (491)
T PRK11010 170 -YLGWQGMYWLMAALLIPCIIATL-LAPEPTDTIPVPKTLEQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAF-AMSLTT 246 (491)
T ss_pred -ccCHHHHHHHHHHHHHHHHHHHH-hcCCCccccccccchhhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 25788889887776665544443 345543221111111112223455667777666554444433333222 355667
Q ss_pred ccccccCCCCc---hHHHH-HHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccc
Q 013253 273 ALSPNDEEIPH---GFIFA-TFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGIS 348 (447)
Q Consensus 273 ~~~~~~~~~~~---~~~~~-~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (447)
.|+.+..|.+. +.... ...++.+++.++.|+++||+|+|+. +.....+..+........... .++
T Consensus 247 ~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~--l~i~~~l~~l~~l~~~~l~~~-~~~-------- 315 (491)
T PRK11010 247 TFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRA--LMIFGILQGVSNAGYWLLSIT-DKN-------- 315 (491)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHhc-ccc--------
Confidence 67655566665 44443 3346889999999999999998763 333333222222111111111 000
Q ss_pred cchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 349 FSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 349 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
.+......++..+..+...+...++..+..|++.+++..|+.+..
T Consensus 316 --~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~ 360 (491)
T PRK11010 316 --LYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSAL 360 (491)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 112233444444455555566788888888888888887776653
No 73
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.92 E-value=3.5e-23 Score=198.64 Aligned_cols=341 Identities=14% Similarity=0.061 Sum_probs=189.2
Q ss_pred hHHHHHHHHHHHhhhhhcchhHhHhH-hhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHH
Q 013253 39 KNNYLLVYSLMMAGDWLQGPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCI 117 (447)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~l 117 (447)
.|......++..++.+...|++|... +++|+|+.++|.+.+...+...+.++++|+++||+||||++.++..+.++...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~ 91 (420)
T PRK09528 12 YWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFG 91 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 34444444555555555677777655 55999999999999999999999999999999999999999887666554321
Q ss_pred -H-h--cCc-----hhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh-cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 013253 118 -T-K--HSP-----QYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN 187 (447)
Q Consensus 118 -~-~--~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~ 187 (447)
. . .++ ......+.++..|.+.....+.... +..+. +++++..+..+. +..+|..+++.+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~--------~~~~g~~i~~~~~g 162 (420)
T PRK09528 92 PFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEA-YIERVSRRSGFEYGRARM--------WGSLGWALCAFIAG 162 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhh-HHHHHHhhccccchhhHH--------hhhHHHHHHHHHHH
Confidence 1 1 111 1111223334444333333333322 32222 222322222211 23355666666666
Q ss_pred hhhcccccCccchhhhHHHHHHHHHHHHHHhccccCCCC---CCch-hHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhh
Q 013253 188 LLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDP---SESK-DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSM 263 (447)
Q Consensus 188 ~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (447)
.+.+ .+|+.+|+..+.+.++.........+|+++++ ++++ +..+...+..++.+|+|+++...+........
T Consensus 163 ~l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~- 238 (420)
T PRK09528 163 ILFN---INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGANASAVSLKDALALLKLPKFWFLVLYVIGVACF- 238 (420)
T ss_pred HHHh---cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccchhcccccccHHHHHHHccCCCeEeehHHHHHHHHH-
Confidence 6653 35567787766666555444443333322211 1010 00111122344567788766554433322222
Q ss_pred hhhhhhcccccccccC---CCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhcc
Q 013253 264 YTFVFLWTPALSPNDE---EIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLV 337 (447)
Q Consensus 264 ~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 337 (447)
+.....+.|.|..+.. +.+. +...+...+...++.++.|++.||+|+|+. +..+..+..+...........
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~--~~~~~~l~~~~~~l~~~~~~~- 315 (420)
T PRK09528 239 YDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNA--LLLAGTIMAVRIIGSGFATGP- 315 (420)
T ss_pred HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh--hHHHHHHHHHHHHHHHhcccH-
Confidence 2222334555543221 2222 666777778888999999999999999873 444444444333332221111
Q ss_pred CCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccch-hhhh------hhHHHHHHHHhhcc
Q 013253 338 APSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNF-FRIP------LNIFVCVVLYNVDA 409 (447)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~------~~~~~~~~l~~~~~ 409 (447)
+.......+.+++.+...+....+.+|..|++.+++..+. +++. .+..+.+++.+..+
T Consensus 316 --------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G 380 (420)
T PRK09528 316 --------------LEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG 380 (420)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 2445556666777766667777888999999999887654 2321 33344555656533
No 74
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.92 E-value=2e-22 Score=188.76 Aligned_cols=294 Identities=24% Similarity=0.312 Sum_probs=212.8
Q ss_pred HHHHhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhH
Q 013253 47 SLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYK 125 (447)
Q Consensus 47 ~~~~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~ 125 (447)
+..........+..|.+.+++|.++.+.+++.+...+...+.+++.|+++||+|||+.+..+..+..++. ...+.++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 88 (352)
T cd06174 9 FLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLW 88 (352)
T ss_pred HHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHH
Confidence 3444455555788888889999999999999999888888999999999999999999999999998876 567789999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHhhhc---ccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhh
Q 013253 126 ILMIGRILGGIATSLLFSAFESWLVAEHN---KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFD 202 (447)
Q Consensus 126 ~l~~~r~l~G~~~~~~~~~~~~~~i~~~~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~ 202 (447)
.+++.|++.|++.+...+...+ ++.|.. +|++..+. ...+..+|..+++.+++.+.+..+ |+..+.
T Consensus 89 ~~~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~ 157 (352)
T cd06174 89 LLLVGRFLLGLGGGALYPAAAA-LIAEWFPPKERGRALGL--------FSAGFGLGALLGPLLGGLLAESLG--WRWLFL 157 (352)
T ss_pred HHHHHHHHHHcccccccHhHHH-HHHHhCCccchhhhhhH--------HHHHHHHHHHHHHHHHHHHHHHhh--HHHHHH
Confidence 9999999999999999888866 788873 33343332 223445666666677776665444 566677
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCC
Q 013253 203 AAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIP 282 (447)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (447)
..+...++..+... ..+ |+++.......+....... ...+.|.+.++..+.+
T Consensus 158 ~~~~~~~~~~~~~~-~~~--------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 209 (352)
T cd06174 158 ILAILGLLLALLLL-FLL--------------------------RLLLLLALAFFLLSFGYYG-LLTYLPLYLQEVLGLS 209 (352)
T ss_pred HHHHHHHHHHHHHH-HHH--------------------------HHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCC
Confidence 76666555544433 222 3334444444444444333 4667777776654544
Q ss_pred c---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHH
Q 013253 283 H---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFC 359 (447)
Q Consensus 283 ~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (447)
. +.......++..++.++.+++.||++||+. .+..+.....+........... +...+...
T Consensus 210 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~---------------~~~~~~~~ 273 (352)
T cd06174 210 AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL-LLLIGLLLAALGLLLLALAPSL---------------ALLLVALL 273 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhccH---------------HHHHHHHH
Confidence 4 667778889999999999999999988762 2444444444444433322211 35677788
Q ss_pred HHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 360 TFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 360 l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+.+++.+...+...++..|..|+++|++.+|+.+..
T Consensus 274 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (352)
T cd06174 274 LLGFGLGFAFPALLTLASELAPPEARGTASGLFNTF 309 (352)
T ss_pred HHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999987764
No 75
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.91 E-value=2.7e-22 Score=191.09 Aligned_cols=352 Identities=13% Similarity=0.059 Sum_probs=206.3
Q ss_pred hHHHHHHHHHHHhhhhhcchhHhHhH-hhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-
Q 013253 39 KNNYLLVYSLMMAGDWLQGPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC- 116 (447)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~- 116 (447)
-|......++...+.+...|++|... +++|.|+.+.|++.+...+...+.+++.|+++||+|||+.++.+....+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~ 83 (396)
T TIGR00882 4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFA 83 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 34555556666666777788887655 5789999999999999999999999999999999999999988776665432
Q ss_pred H---HhcCc-----hhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhc-ccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 013253 117 I---TKHSP-----QYKILMIGRILGGIATSLLFSAFESWLVAEHN-KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN 187 (447)
Q Consensus 117 l---~~~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~-~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~ 187 (447)
. ..+.+ .+..+++.|++.|++.+...+.... +..|.. +++...+..+. ...+|..+++.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~--------~~~~g~~~g~~~~g 154 (396)
T TIGR00882 84 PFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEA-YIEKVSRNSNFEYGKARM--------FGCVGWALCASIAG 154 (396)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHH-HHHHhhhhcccccchhhh--------hcccHHHHHHHHHh
Confidence 1 12222 2334567788899988888777755 555542 22222121111 22355566666666
Q ss_pred hhhcccccCccchhhhHHHHHHHHHHHHHHhccccCCCCCCch----hHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhh
Q 013253 188 LLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSESK----DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSM 263 (447)
Q Consensus 188 ~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (447)
.+.+ ++|+.+|++.+.+.++..+......||+++++++++ +..++..++.++.+|+|+++............
T Consensus 155 ~l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~- 230 (396)
T TIGR00882 155 ILFS---IDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVANALGANASAFSLKLALELFRQRKFWMFVLYVVGVACV- 230 (396)
T ss_pred hhhc---cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhcccccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHH-
Confidence 5543 467888888777666555444333333221111000 00111123456778888877665444333322
Q ss_pred hhhhhhcccccccccC---CCC--c-hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhcc
Q 013253 264 YTFVFLWTPALSPNDE---EIP--H-GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLV 337 (447)
Q Consensus 264 ~~~~~~~~~~~~~~~~---~~~--~-~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 337 (447)
+.....+.|.|.++.. +.+ . +...+...+...++....+++.||+|+|+. +..+..+.++...........
T Consensus 231 ~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~--l~~~~~l~~l~~~~~~~~~~~- 307 (396)
T TIGR00882 231 YDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNA--LLIAGTIMSVRIIGSSFATTA- 307 (396)
T ss_pred HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh--HHHHHHHHHHHHHHHHhcCCh-
Confidence 2223334555544322 222 1 666677778888889999999999998883 444444444433332211111
Q ss_pred CCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccch-hhhh------hhHHHHHHHHhhccc
Q 013253 338 APSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNF-FRIP------LNIFVCVVLYNVDAF 410 (447)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~------~~~~~~~~l~~~~~~ 410 (447)
+......++.+++..........+..+..|++.+++..+. .+.. .+..+++.+.+..+
T Consensus 308 --------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G- 372 (396)
T TIGR00882 308 --------------LEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG- 372 (396)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-
Confidence 2445556666666554445555567777888888776655 2321 23344455655533
Q ss_pred chHHHHHHHHHH
Q 013253 411 PITVMFGMCSIF 422 (447)
Q Consensus 411 ~~~~~~~~~~~~ 422 (447)
+...+...++.
T Consensus 373 -~~~~f~~~~~~ 383 (396)
T TIGR00882 373 -FQGAYLVLGCI 383 (396)
T ss_pred -cHHHHHHHHHH
Confidence 43444433333
No 76
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.91 E-value=2.5e-21 Score=172.74 Aligned_cols=303 Identities=19% Similarity=0.219 Sum_probs=217.7
Q ss_pred hhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HH---hcCchhHH
Q 013253 51 AGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT---KHSPQYKI 126 (447)
Q Consensus 51 ~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~---~~~~~~~~ 126 (447)
+.+....+.+|.+.+.++++..|.+.+....+....+.+++.|++.+|+|+|+.++.++.++++++ +. +...++..
T Consensus 27 ~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~ 106 (422)
T COG0738 27 FITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGF 106 (422)
T ss_pred HHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 355555899999999999999999999888888888889999999999999999999999999986 43 45778999
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc-----------
Q 013253 127 LMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS----------- 192 (447)
Q Consensus 127 l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~----------- 192 (447)
++++-++.|.|.+...+++.+ +++.. ++..++....+.. +++|.+++|.+++.+..+
T Consensus 107 FL~~lFila~Gi~~LetaaNp-~v~~lg~~~~a~~rlnl~q~f--------n~lGa~~gp~~g~~lils~~~~~~~~~~~ 177 (422)
T COG0738 107 FLVALFILASGIGLLETAANP-YVTLLGKPESAAFRLNLAQAF--------NGLGAILGPLLGSSLILSGVALTMSAAQI 177 (422)
T ss_pred HHHHHHHHHhhhHHHHhccch-HHHHhCCchhHHHHHHHHHHh--------hhhHHHHHHHHHHHHHHhhhhhccCHHHH
Confidence 999999999999999999988 87766 2244555544443 346666666666666541
Q ss_pred ccc------CccchhhhHHHHHHHHHHHHH-HhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhh
Q 013253 193 FSL------GPVAPFDAAACFLAIGMVIIL-SSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYT 265 (447)
Q Consensus 193 ~~~------~~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (447)
..| .++.+|...+....+..+... .+.|+.+..+++..+..+ ....+++|+|+.+...+..+++.+....
T Consensus 178 ~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~~~---~~~~~l~~~~~~~~gvl~~FlYVG~Eva 254 (422)
T COG0738 178 LAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGASGS---AGLSSLFQNKHLRLGVLAIFLYVGAEVA 254 (422)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccccccccc---chHHHHHhChHHHHHHHHHHHHHhHHHH
Confidence 011 256677766655554443333 344554433322221111 1445788999999888888888777666
Q ss_pred hhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 013253 266 FVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNV 342 (447)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (447)
...|++.|..+..|.+. +...+....+.++|++++.++.+|+...+ .+........+.+....+....
T Consensus 255 -~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k--~Laf~a~~~ill~~~~~l~~g~------ 325 (422)
T COG0738 255 -IGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEK--YLAFYALIAILLLLAVALIGGV------ 325 (422)
T ss_pred -HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH--HHHHHHHHHHHHHHHHHHhcCh------
Confidence 58889999877666555 55667778999999999999999995555 3444433333333332322222
Q ss_pred CCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhh
Q 013253 343 KSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA 384 (447)
Q Consensus 343 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~ 384 (447)
+.+....+.|+..+..+|..++...+..|++.
T Consensus 326 ----------v~~~~l~~ig~F~simfPTIfslal~~l~~~t 357 (422)
T COG0738 326 ----------VALYALFLIGLFNSIMFPTIFSLALKNLGEHT 357 (422)
T ss_pred ----------HHHHHHHHHHHHhHHHHHHHHHHHHhccCccc
Confidence 66788888999999999999999999999443
No 77
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.91 E-value=7.3e-22 Score=190.85 Aligned_cols=313 Identities=13% Similarity=0.111 Sum_probs=192.3
Q ss_pred hHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhc----cCchh-HHHHHHHHHHHHH-HHhcCch------hHHHH
Q 013253 61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK----QGRKR-ACVTYCLTYILSC-ITKHSPQ------YKILM 128 (447)
Q Consensus 61 ~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr----~Grr~-~l~~~~~~~~i~~-l~~~~~~------~~~l~ 128 (447)
+.+.+++|+|+.++|.+.++..+...+..|+.|+++|| +|||| .++.+....+++. ++...++ ...++
T Consensus 24 ~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 103 (437)
T TIGR00792 24 FFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAY 103 (437)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence 34557899999999999999999999999999999998 67755 5667777777665 4444443 45667
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHhhh----cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-cccccCccchhhh
Q 013253 129 IGRILGGIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLV-DSFSLGPVAPFDA 203 (447)
Q Consensus 129 ~~r~l~G~~~~~~~~~~~~~~i~~~----~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~-~~~~~~~~~~f~~ 203 (447)
+.+++.+++.+...+...+ +..|. ++|++..+.. .....+|..++..+.+.+...+. +...++|+..+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~a-l~~~~~~~~~~R~~~~~~~----~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i 178 (437)
T TIGR00792 104 ITYILLGLFYSFVNIPYWS-LVPAITLDPRERESLSTFR----RFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALV 178 (437)
T ss_pred HHHHHHHHHHHhhcccHhh-CcccccCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHH
Confidence 7788888888876655444 55544 3344433322 22233333333333222222211 1123577888877
Q ss_pred HHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc
Q 013253 204 AACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH 283 (447)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (447)
.+++.++..+......+|++++++++++...+..+..++++++|+++.......+....... ...+.+.|.++..+.+.
T Consensus 179 ~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 257 (437)
T TIGR00792 179 LALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNI-KNGVQVYYFTYVLGDPE 257 (437)
T ss_pred HHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HcchhheeEeeecCChH
Confidence 77777666555554556554221111111123445667788999888776665555544333 34455556555444322
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHH
Q 013253 284 --GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTF 361 (447)
Q Consensus 284 --~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 361 (447)
+.......++.+++.++.+++.||+|+|+. +..+..+..+........... .+...+..++.
T Consensus 258 ~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~--~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~ 321 (437)
T TIGR00792 258 LFSYMGSIAIVAGLIGVLLFPRLVKKFGRKIL--FAGGILLMVLGYLIFFFAGSN--------------LPLILVLIILA 321 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH--HHHHHHHHHHHHHHHHHcchh--------------HHHHHHHHHHH
Confidence 555566678899999999999999998873 444444333333332221111 12445566777
Q ss_pred HhhhccchhHHHHHHhhcCC-------hhhhccccchhhhh
Q 013253 362 EACVGIFWPSIMKMRSQYIP-------EEARSTIMNFFRIP 395 (447)
Q Consensus 362 g~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~ 395 (447)
+++.+..++..+++.+|..| ++.+|+..|+.++.
T Consensus 322 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 362 (437)
T TIGR00792 322 GFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFV 362 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHH
Confidence 88888888999999998876 34467777776663
No 78
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.91 E-value=2.2e-21 Score=187.80 Aligned_cols=335 Identities=12% Similarity=0.100 Sum_probs=193.9
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhc-cCchhHHHHHHHHHHHHH-HHhcCchhHH-HHHHHHH
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSC-ITKHSPQYKI-LMIGRIL 133 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr-~Grr~~l~~~~~~~~i~~-l~~~~~~~~~-l~~~r~l 133 (447)
..+..++.+++|.+.++.+++.........+..+++|+++|| +||||++..+.++++++. +++++++... ++++|++
T Consensus 35 ~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l 114 (489)
T PRK10207 35 GILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGT 114 (489)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 334445668899999999888777776677777789999999 999999999999999986 6677766444 5589999
Q ss_pred HHhhhhhhhhhhhHHHHhhh-cccc-hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHH
Q 013253 134 GGIATSLLFSAFESWLVAEH-NKRG-FEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIG 211 (447)
Q Consensus 134 ~G~~~~~~~~~~~~~~i~~~-~~r~-~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~ 211 (447)
+|+|.|...|...+ ++.|. .++. ++.+. ++ ....+..+|..++|.+++++.++.+ |++.|++.++..++.
T Consensus 115 ~~ig~g~~~~~~~~-li~~~~p~~~~~~~~~----~~-~~~~~~nig~~~g~~l~g~l~~~~g--w~~~F~i~~i~~~~~ 186 (489)
T PRK10207 115 IAVGNGLFKANPAS-LLSKCYPPKDPRLDGA----FT-LFYMSINIGSLISLSLAPVIADKFG--YSVTYNLCGAGLIIA 186 (489)
T ss_pred HHhccccccCCHHH-HHHHhcCCCchhhhcc----hh-HHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 99999999988866 78876 2221 22221 11 2233444566666666666665554 566787754433322
Q ss_pred HHHHH--HhccccCC-CCCC-chhHHHH----------------------H-----------------H--HHHHHHhcc
Q 013253 212 MVIIL--SSWTENYG-DPSE-SKDLLTQ----------------------F-----------------R--GAAVAIASD 246 (447)
Q Consensus 212 ~~~~~--~~~~~~~~-~~~~-~~~~~~~----------------------~-----------------~--~~~~~~~~~ 246 (447)
.+... ++..++.+ ++++ +.+.... . . ...++..|+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~~~~r~ 266 (489)
T PRK10207 187 LLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKLDKTGRN 266 (489)
T ss_pred HHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 22222 11111111 1111 1110000 0 0 000112233
Q ss_pred hhHHHHHHH-HHhhhhhhhhhhhhcccccccccCC-------CCchHHHHHHHHHHHHHHHHHHHHhhcCCCcch-----
Q 013253 247 EKIALLGAI-QSLFEGSMYTFVFLWTPALSPNDEE-------IPHGFIFATFMLASMLGSSLASRLMARSPPRVE----- 313 (447)
Q Consensus 247 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~----- 313 (447)
|.+....+. ........+....+..+.+.++..+ .+++.......+..++..++.+++.||.++|+.
T Consensus 267 r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~ 346 (489)
T PRK10207 267 KMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMP 346 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcH
Confidence 332222211 1222222233333444445443211 223555566667777888888999999987751
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhh
Q 013253 314 SYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFR 393 (447)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~ 393 (447)
..+..+..+.++++............ .+.....|+.+...++.+++.+...|...+.+.+..|++.++.++|+.+
T Consensus 347 ~k~~~G~~l~~~~~~~~~~~~~~~~~-----~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~ 421 (489)
T PRK10207 347 MKFTLGMFLCSLGFLTAAAAGMWFAD-----AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWF 421 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHH
Confidence 01444555544444332111110000 0001223566788899999999999999999999999999999999977
Q ss_pred hh--hhHHHHHHH
Q 013253 394 IP--LNIFVCVVL 404 (447)
Q Consensus 394 ~~--~~~~~~~~l 404 (447)
.. .+..+++.+
T Consensus 422 l~~~ig~~lg~~l 434 (489)
T PRK10207 422 LTQAAAFLLGGYV 434 (489)
T ss_pred HHHHHHHHHHHHH
Confidence 64 333444433
No 79
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.91 E-value=1.1e-21 Score=211.01 Aligned_cols=336 Identities=15% Similarity=0.082 Sum_probs=206.6
Q ss_pred HHHHHHHHHhhhhhc-ch---hH-hHhHhhcCCCC-cchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHH---HH
Q 013253 42 YLLVYSLMMAGDWLQ-GP---YV-YYLYSTYGFGK-GEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCL---TY 112 (447)
Q Consensus 42 ~~~~~~~~~~~~~~~-~~---~l-~~i~~~~g~s~-~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~---~~ 112 (447)
++...++..+++.+. .. +. +.+.++.+.+. ...++..++..+...++++++|+++||+|||+++..... ..
T Consensus 16 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~ 95 (1140)
T PRK06814 16 LFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGI 95 (1140)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHH
Confidence 444455666666554 11 11 12223333332 335566666777778999999999999999998644222 22
Q ss_pred HHHH-HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 013253 113 ILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL 188 (447)
Q Consensus 113 ~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~ 188 (447)
.... .....++++.+++.|+++|++.+...|...+ ++.|. +++++..++ ...+..+|.+++|.++++
T Consensus 96 ~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a-~l~~~~~~~~~~~a~~~--------~~~~~~ig~~igp~l~g~ 166 (1140)
T PRK06814 96 AALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS-ILPDHLNKDELLGANAL--------VEAGTFIAILLGTIIGGL 166 (1140)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH-hhHhhcCccccchhhHH--------HHHHHHHHHHHHHHHHHH
Confidence 2222 3344589999999999999999999998877 77777 334444433 233455677777777777
Q ss_pred hhcccccCccchhhhHHHHHHHHHHHHHHhccccCCCCCCc---hhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhh
Q 013253 189 LVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSES---KDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYT 265 (447)
Q Consensus 189 l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (447)
+.+..+ |+..|....+..++. ++...+.|+.+.++++. .+..++....++.+++++.++...+...+.......
T Consensus 167 l~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1140)
T PRK06814 167 ATISGN--FVILVALLMGIAVLG-WLASLFIPKTGNAAPDLKIDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAV 243 (1140)
T ss_pred HHhccc--cHHHHHHHHHHHHHH-HHHHhhCCCCCCCCCCCeeccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 776554 455553333333332 33333455443221111 112233345677788888888877666665555443
Q ss_pred hhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 013253 266 FVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNV 342 (447)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (447)
...+.|.|.++.++.+. +.+.+...++.+++.+..+++.||..+++. +..+..+.++...............
T Consensus 244 -~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~-- 318 (1140)
T PRK06814 244 -VLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLY--VPIGALLMGLFGLDLAFASSSVPAE-- 318 (1140)
T ss_pred -HHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeee--ehHHHHHHHHHHHHHHhcccccccc--
Confidence 46789999987777665 777788889999999999999988765542 3333333322222221110000000
Q ss_pred CCCc--------cccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 343 KSGG--------ISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 343 ~~~~--------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
... .....+...+..+++|++.+...+...+++++..|++.||+++|+.++.
T Consensus 319 -~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~ 378 (1140)
T PRK06814 319 -PAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVL 378 (1140)
T ss_pred -cccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHH
Confidence 000 0011245567777888888888888999999999999999999987764
No 80
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.3e-23 Score=190.11 Aligned_cols=337 Identities=15% Similarity=0.117 Sum_probs=207.7
Q ss_pred hHHHHHHHHHHHhhhhhc----chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHH
Q 013253 39 KNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL 114 (447)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~----~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i 114 (447)
.++.+.+.++..+.+.++ ....+.+.+.+|++++..|.+.+...+...+++|+.|+++|||+||+++..+..++.+
T Consensus 31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~ 110 (493)
T KOG1330|consen 31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTL 110 (493)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHH
Confidence 455666666777777766 3455677889999999999988888888889999999999999999999999999999
Q ss_pred HH-HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 013253 115 SC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF 193 (447)
Q Consensus 115 ~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~ 193 (447)
+. .++++..+|+++++|.+.|+|.+...|.+.+ +++|.-+..++...... +... ..+|..+|.+.+..+.+..
T Consensus 111 Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s-~IaD~f~~~~Rs~~~~i-fy~~----ipvGsglG~vvgs~va~~~ 184 (493)
T KOG1330|consen 111 AVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPS-LIADSFPDDKRSRVLGI-FYFA----IPVGSGLGYVVGSVVASLT 184 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhcccchh-HhhhcCcchhhhHHHHH-hhhh----cccccceeEEeeeeeccCc
Confidence 87 6799999999999999999999999999977 99998333333332222 2223 3355555555566655556
Q ss_pred ccCccchhhhHHHHHHHHHHHHHHhccccCCCC-CCchh------HHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhh
Q 013253 194 SLGPVAPFDAAACFLAIGMVIILSSWTENYGDP-SESKD------LLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTF 266 (447)
Q Consensus 194 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (447)
+| ||+.|...+++.++..++.....+|.+++. ++.++ ......++.+...|++.+....+.....++..-.
T Consensus 185 ~~-Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs- 262 (493)
T KOG1330|consen 185 FW-WRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGS- 262 (493)
T ss_pred cc-eEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccc-
Confidence 65 889999999988887777765555543211 11111 1122233444555545443333333333333222
Q ss_pred hhhcccccccc-----cCCCCchHHH-HHHHHHHHHHHHHHHHHhhcCCCcch--hHHHH--HHHHHHHHHHHHH--Hhh
Q 013253 267 VFLWTPALSPN-----DEEIPHGFIF-ATFMLASMLGSSLASRLMARSPPRVE--SYMQI--VFVVSSVSLLLPI--VTS 334 (447)
Q Consensus 267 ~~~~~~~~~~~-----~~~~~~~~~~-~~~~i~~~~~~~~~g~l~dr~g~~~~--~~l~~--~~~~~~~~~~~~~--~~~ 334 (447)
+..|.|.+... +.+-+.+.++ .+...++.+|.+.+|.++||+.|+.. ..... .....+....++. ...
T Consensus 263 ~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~ 342 (493)
T KOG1330|consen 263 LSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFP 342 (493)
T ss_pred cchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHH
Confidence 35566665432 1222334444 55667889999999999998422110 00111 1111111111111 111
Q ss_pred hccCCCCCCCCccccchhhHHHHHHHHHhhhccch-hHHHHHHhhcCChhhhccccchhhh
Q 013253 335 FLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFW-PSIMKMRSQYIPEEARSTIMNFFRI 394 (447)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~p~~~r~~~~g~~~~ 394 (447)
..... .....+.+++.|....... ....-+..|.+|++.|.+++++...
T Consensus 343 ~~~~~-----------s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~ 392 (493)
T KOG1330|consen 343 AFTSS-----------SMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTV 392 (493)
T ss_pred hhhhH-----------HHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHH
Confidence 11000 0133333444444433333 4455577899999999999877554
No 81
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.90 E-value=2.3e-21 Score=181.68 Aligned_cols=322 Identities=17% Similarity=0.208 Sum_probs=189.1
Q ss_pred hhcC--CCCcchh----HHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-H---HhcCchhHHHHHHHHHH
Q 013253 65 STYG--FGKGEIG----QLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-I---TKHSPQYKILMIGRILG 134 (447)
Q Consensus 65 ~~~g--~s~~~~g----~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l---~~~~~~~~~l~~~r~l~ 134 (447)
+++| .++.+.. ...+...+.+++++...|.++||+|||..+..+.++..++. + +...++++.++++|++.
T Consensus 47 ~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~ 126 (485)
T KOG0569|consen 47 ERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIV 126 (485)
T ss_pred HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4566 4555554 33444556677777889999999999999999988887753 2 24588999999999999
Q ss_pred HhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh-hhcccccCccchhhhHHHHHHHHHH
Q 013253 135 GIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL-LVDSFSLGPVAPFDAAACFLAIGMV 213 (447)
Q Consensus 135 G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~-l~~~~~~~~~~~f~~~~~~~~~~~~ 213 (447)
|+..|...... +.++.|..+...++. .+....++..+|..++..++.. +.. ..-.|.+.+....+..++..+
T Consensus 127 Gl~~gl~~~~~-pmyl~E~sP~~~RG~-----~g~~~~~~~~~g~ll~~~~~l~~ilG-t~~~W~~l~~~~~i~~~~~l~ 199 (485)
T KOG0569|consen 127 GLACGLSTGLV-PMYLTEISPKNLRGA-----LGTLLQIGVVIGILLGQVLGLPSLLG-TEDLWPYLLAFPLIPALLQLA 199 (485)
T ss_pred HHHhHHHHHHH-HHHHhhcChhhhccH-----HHHHHHHHHHHHHHHHHHHccHHhcC-CCcchHHHHHHHHHHHHHHHH
Confidence 99999998776 668999855544443 2222333334444444333321 111 112455666666665555544
Q ss_pred HHHHhccccCC-------CCCCchhHHHHH--------------------------HHHHHHHhcchhHHHH----HHHH
Q 013253 214 IILSSWTENYG-------DPSESKDLLTQF--------------------------RGAAVAIASDEKIALL----GAIQ 256 (447)
Q Consensus 214 ~~~~~~~~~~~-------~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~----~~~~ 256 (447)
.. ++.||+++ +++++++..+.. ..+.+++++++..... ....
T Consensus 200 ~l-~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~ 278 (485)
T KOG0569|consen 200 LL-PFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVS 278 (485)
T ss_pred HH-hcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHH
Confidence 44 47787543 222222111100 0123456666443332 2222
Q ss_pred Hhhhhhhhhhhhhccccccc-ccCCCCc-hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhh
Q 013253 257 SLFEGSMYTFVFLWTPALSP-NDEEIPH-GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTS 334 (447)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~ 334 (447)
...+.........|...+++ .+...+. .......++...+.++++.++.||.|||+. ++.+..+..+...+.....
T Consensus 279 ~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpL--ll~~~~~~~~~~~~~~~~~ 356 (485)
T KOG0569|consen 279 FAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPL--LLISLSLMAVALLLMSIAL 356 (485)
T ss_pred HHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH--HHHHHHHHHHHHHHHHHHH
Confidence 22333333334445544443 3333333 344456678899999999999999999983 5555555444444433222
Q ss_pred hccCCCCCCCCccccchhhHHHHHHHHHhhhccch-hHHHHHHhhcCChhhhccccchhhhh---hhHHHHH
Q 013253 335 FLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFW-PSIMKMRSQYIPEEARSTIMNFFRIP---LNIFVCV 402 (447)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~p~~~r~~~~g~~~~~---~~~~~~~ 402 (447)
...+. .+ ....+..+.+.+++.+.++... |+.+-+.+|.+|++.|+++++..... .+..++.
T Consensus 357 ~l~~~----~~--~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~ 422 (485)
T KOG0569|consen 357 FLSNS----FG--SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGF 422 (485)
T ss_pred HHHHH----hh--hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 22100 00 1111234566677777777664 99999999999999999998775543 4444443
No 82
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.90 E-value=3.2e-21 Score=208.12 Aligned_cols=311 Identities=15% Similarity=0.046 Sum_probs=197.4
Q ss_pred chhHhHhHhhcCCCCcc--hhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH----HHhcCchhHHHHHH
Q 013253 57 GPYVYYLYSTYGFGKGE--IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC----ITKHSPQYKILMIG 130 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~--~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~----l~~~~~~~~~l~~~ 130 (447)
..+.+.+..+++.+.+. .+++.++..+...++++++|+++||+|||++++.+.++..+.. ++...++++.+++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 109 (1146)
T PRK08633 30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAV 109 (1146)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 44445566667665433 5677777777777888999999999999999999887665432 23456789999999
Q ss_pred HHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc--------cccCccc
Q 013253 131 RILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS--------FSLGPVA 199 (447)
Q Consensus 131 r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~--------~~~~~~~ 199 (447)
|+++|++.+...+...+ ++.|. ++|++..+.... +..+|.++++.+++++.+. .+| |.+
T Consensus 110 r~l~G~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~~~--------~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~-~~~ 179 (1146)
T PRK08633 110 TFLLGAQSAIYSPAKYG-IIPELVGKENLSRANGLLEA--------FTIVAILAGTALFSFLFESVNGNTPSEILG-RIA 179 (1146)
T ss_pred HHHHHHHHHhhchHHHh-hhHHhcCcccchhhhhHHHH--------HHHHHHHHHHHHHHHHHHhhcccccccccc-chH
Confidence 99999999999888866 88887 445554443322 3345555555555555543 112 222
Q ss_pred hhhhHHHHHHHHHHHHHHhccccCCCCCC-----chhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhccccc
Q 013253 200 PFDAAACFLAIGMVIILSSWTENYGDPSE-----SKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPAL 274 (447)
Q Consensus 200 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (447)
.+....+...+..++.....|+.+...++ .....+...+..+.+++++.++...+...+....... ...+.|.|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 258 (1146)
T PRK08633 180 PAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQL-AQANFPAY 258 (1146)
T ss_pred HHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH-HHHhhHHH
Confidence 22222222222222222244543322111 1111223344566778888777665555544444333 46677888
Q ss_pred ccccCCCCc----hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccc
Q 013253 275 SPNDEEIPH----GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFS 350 (447)
Q Consensus 275 ~~~~~~~~~----~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (447)
.++..+.+. +.+.+...++.+++.++.+++.||+++++. +.++..+..++..........
T Consensus 259 ~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~-------------- 322 (1146)
T PRK08633 259 AKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGL--VPLGALGLALSLFLLPTAPSL-------------- 322 (1146)
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccc--hhHHHHHHHHHHHHHHHhhhH--------------
Confidence 766555543 566677778899999999999999987763 334443333333332222111
Q ss_pred hhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 351 GSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 351 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+..++..++.+++.+...+...+++.+..|++.|++++|+.++.
T Consensus 323 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~ 366 (1146)
T PRK08633 323 -ASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFL 366 (1146)
T ss_pred -HHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHH
Confidence 35566778888888888888999999999999999999887764
No 83
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.89 E-value=1.2e-20 Score=185.14 Aligned_cols=328 Identities=17% Similarity=0.147 Sum_probs=198.4
Q ss_pred hhcchhHhHhHhhcC-----CCC--cchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhH
Q 013253 54 WLQGPYVYYLYSTYG-----FGK--GEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYK 125 (447)
Q Consensus 54 ~~~~~~l~~i~~~~g-----~s~--~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~ 125 (447)
+...+....+.++.. .+. .+.+++.+...+.+.+++++.|+++|++|||+.++.+.+++.++. ++++++|++
T Consensus 64 g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~ 143 (513)
T KOG0254|consen 64 GGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWY 143 (513)
T ss_pred ccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 344666666654321 122 234788888888888999999999999999999999999999986 779999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHH
Q 013253 126 ILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAA 205 (447)
Q Consensus 126 ~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~ 205 (447)
+++++|+++|+|.|...... +.+++|..++..|+.... ....... +|..++..++....+. .++||.++.+..
T Consensus 144 ~l~~GR~l~G~g~G~~~~~~-piy~sEiap~~~RG~l~~-~~~l~~~----~Gi~~~~~~~~~~~~~-~~~Wr~~~~~~~ 216 (513)
T KOG0254|consen 144 QLIVGRILTGLGVGGASVLA-PVYISEIAPAHIRGTLVS-LYQLFIT----IGILLGYCINYGTSKV-YAGWRIPLGLAL 216 (513)
T ss_pred HHHHHHHHhccchhhhhhcc-hhhHhhcCChhhhHHHHH-HHHHHHH----HHHHHHHHHhhhhccC-CccHHHHHHHHH
Confidence 99999999999999998776 558999844433333221 1222222 3333332222222211 267888877777
Q ss_pred HHHHHHHHHHHHhccccCC------CCCCchhHHHHHHH----------------------------HHHHHhc--chh-
Q 013253 206 CFLAIGMVIILSSWTENYG------DPSESKDLLTQFRG----------------------------AAVAIAS--DEK- 248 (447)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~----------------------------~~~~~~~--~~~- 248 (447)
+..++..+. ....||++. +.+++++..+++.+ .++++++ .++
T Consensus 217 i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 295 (513)
T KOG0254|consen 217 IPAVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKR 295 (513)
T ss_pred HHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHH
Confidence 666665555 445666432 22221111111100 0111221 112
Q ss_pred HHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc-hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHH
Q 013253 249 IALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH-GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSL 327 (447)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~ 327 (447)
.........+.+...+....+|.+.+++.....+. .......++...++..++..+.||+|||+ .++.+.....++.
T Consensus 296 ~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~--lll~s~~~m~~~~ 373 (513)
T KOG0254|consen 296 LIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRK--LLLFGAAGMSICL 373 (513)
T ss_pred HHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHhHHHHHHHH
Confidence 22233344444555555567777777765433323 33444556778888888899999999998 3555555555555
Q ss_pred HHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccch-hHHHHHHhhcCChhhhccccchhhh
Q 013253 328 LLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFW-PSIMKMRSQYIPEEARSTIMNFFRI 394 (447)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~p~~~r~~~~g~~~~ 394 (447)
.+........... .+......+..+...+++-..++..+ |..+.+.+|.+|.+.|+++.++...
T Consensus 374 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~ 438 (513)
T KOG0254|consen 374 VILAVVGVFALYY---PNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVA 438 (513)
T ss_pred HHHHHHHHHhccC---CCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHH
Confidence 5444333221110 00112223445555555555555555 7788899999999999999887553
No 84
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.88 E-value=4.4e-20 Score=173.23 Aligned_cols=348 Identities=18% Similarity=0.169 Sum_probs=214.8
Q ss_pred hHHHHHHHHHHHhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccC-chhHHHHHHHHHHHHH-
Q 013253 39 KNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQG-RKRACVTYCLTYILSC- 116 (447)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~G-rr~~l~~~~~~~~i~~- 116 (447)
+.++....++..+..+...|+++...++.|.|..|+|.+.+...+...+..+++|.++||++ +||.+.+..++.++..
T Consensus 4 ~~rLs~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~ 83 (400)
T PF03825_consen 4 KFRLSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALL 83 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHH
Confidence 44555566666777777789998888999999999999999999988888889999999986 5667766666666654
Q ss_pred HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh-cccchhhhHHHHHHHHHHHHHHHHHHHH-hhhhhhhhhcccc
Q 013253 117 ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAIL-SGLFGNLLVDSFS 194 (447)
Q Consensus 117 l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~-~~~l~~~l~~~~~ 194 (447)
.....++++.++...++..+......|...+ +.-+. ++++..-+..+..-+. |..++... +..+.+. .+
T Consensus 84 ~~~~~~~f~~~~~~~~l~~~~~~p~~pl~ds-i~~~~~~~~~~~YG~iRlwGSi----Gf~~~~~~~~~~~~~~----~~ 154 (400)
T PF03825_consen 84 LLAFSSSFWWLFVIMLLFSFFFSPTMPLSDS-IALSYLGDRGKDYGRIRLWGSI----GFIVAALAFGGLLGGY----LG 154 (400)
T ss_pred HHHHhccHHHHHHHHHHHHHHHccHHHHHHH-HHHHHcccccCCCCcchhhhhH----HHHHHHHHHHHHHHhh----hc
Confidence 4567888998888888888887777777766 54443 3333333333333222 33232221 1112221 22
Q ss_pred cCc-cchhhhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccc
Q 013253 195 LGP-VAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPA 273 (447)
Q Consensus 195 ~~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (447)
++. ...+++.+...++..... ...|+.+++++++++..++..++..+++|+|++....+...+.+.. .....++.+.
T Consensus 155 ~~~~~~~~~i~~~~~~ll~~~~-l~lp~~~~~~~~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~-~~~~~~f~~~ 232 (400)
T PF03825_consen 155 ISGTSLIFYIAAILSLLLAGFA-LFLPKTPPKRSAKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGIS-HAAYYTFFSI 232 (400)
T ss_pred cccccHHHHHHHHHHHHHHHHH-HhCCCCccccccCCCcccccchHHHHHhcCccHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 221 223444443333222222 2445544222222222222222334688999888776666555544 3335667788
Q ss_pred cccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccc
Q 013253 274 LSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFS 350 (447)
Q Consensus 274 ~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (447)
|+++..+.+. +...+...+++++.-...+++.+|+|.++ .+.++.....+=..+......+ .+..
T Consensus 233 yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~--ll~~a~~~~~vR~~l~a~~~~~----------~~~~ 300 (400)
T PF03825_consen 233 YLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKW--LLLLALVAYAVRWLLYAYFSDP----------WPFI 300 (400)
T ss_pred HHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHHHHHHHHhcCC----------cHHH
Confidence 8876543322 66667777889999999999999998776 2444444433333332222111 0100
Q ss_pred hhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh-------hhHHHHHHHHhhcc
Q 013253 351 GSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP-------LNIFVCVVLYNVDA 409 (447)
Q Consensus 351 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-------~~~~~~~~l~~~~~ 409 (447)
.........+.|..++..+.....++.+..|++.|+++.++++.. .+..+++++.+..+
T Consensus 301 ~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g 366 (400)
T PF03825_consen 301 VALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG 366 (400)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 112233345689999999999999999999999999999887652 23355667766533
No 85
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.88 E-value=1.2e-19 Score=175.82 Aligned_cols=341 Identities=12% Similarity=0.118 Sum_probs=200.1
Q ss_pred HhhhhhcchhHhHhH-hh--cCCCCcchhHHHHHHHHhhhhhccccchhhhc-cCchhHHHHHHHHHHHHH-HHhcCchh
Q 013253 50 MAGDWLQGPYVYYLY-ST--YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSC-ITKHSPQY 124 (447)
Q Consensus 50 ~~~~~~~~~~l~~i~-~~--~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr-~Grr~~l~~~~~~~~i~~-l~~~~~~~ 124 (447)
.++.....+.+|... ++ +|++..+.|.+.+.......++++++|+++|| +|||+++..+.++.+++. +.++++++
T Consensus 23 ~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~ 102 (475)
T TIGR00924 23 RFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYP 102 (475)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccH
Confidence 344444466676655 44 89999999999888888888888999999999 899999999999999886 66888888
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHhhhccc---chhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchh
Q 013253 125 KILMIGRILGGIATSLLFSAFESWLVAEHNKR---GFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPF 201 (447)
Q Consensus 125 ~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r---~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f 201 (447)
+.+.+.|.+.|++.|...+...+ +++|..++ +++... ++ ....+..+|..+++.+++++.+.. +|+..|
T Consensus 103 ~~~~~~~~l~g~g~g~~~~~~~~-~~a~~~~~~~~~~r~~~----~~-~~~~~~niG~~ig~~l~g~l~~~~--g~~~~f 174 (475)
T TIGR00924 103 DLIFYGLGTIAVGSGLFKANPSS-MVGKLYERGDMPRRDGG----FT-LFYMSINIGSFISPLLAGVIAENY--GYHVGF 174 (475)
T ss_pred hHHHHHHHHHHhccccccCCHHH-HHHHhcCCCCcccccce----eh-hHHHHHHHHHHHHHHHHHHHHHhc--ChHHHH
Confidence 89999999999999998887755 77765221 122221 11 222344466667777777766544 456777
Q ss_pred hhHHHHHHHHHHHHHHhc---cccCCCCCC--ch--hHHHHHH-------------------------------------
Q 013253 202 DAAACFLAIGMVIILSSW---TENYGDPSE--SK--DLLTQFR------------------------------------- 237 (447)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~--~~~~~~~------------------------------------- 237 (447)
...++..++..+...... ++.+.++++ ++ +..+...
T Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (475)
T TIGR00924 175 NLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFF 254 (475)
T ss_pred HHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 776654444333322111 111111110 00 0000000
Q ss_pred ------HHHHHHhcchhH-HHHHHHHHhhhhhhhhhhhhccccccccc-------CCCCchHHHHHHHHHHHHHHHHHHH
Q 013253 238 ------GAAVAIASDEKI-ALLGAIQSLFEGSMYTFVFLWTPALSPND-------EEIPHGFIFATFMLASMLGSSLASR 303 (447)
Q Consensus 238 ------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~g~ 303 (447)
+..++..|++.. ....+.........+....+..+.+.++. ++.+.+.+.+...+..++.+++..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~ 334 (475)
T TIGR00924 255 FRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAM 334 (475)
T ss_pred HHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHH
Confidence 000001111111 11111222222233333344344444332 2233477888888777777766554
Q ss_pred HhhcCCC-----cchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhh
Q 013253 304 LMARSPP-----RVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQ 378 (447)
Q Consensus 304 l~dr~g~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 378 (447)
+..|.+| +....+..+..+.++++..........+ .+.....++.+...++.+++.....|..+++..|
T Consensus 335 ~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~ 408 (475)
T TIGR00924 335 IWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFAD------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTK 408 (475)
T ss_pred HHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcC------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333322 2211235556665555544433211100 1112334677888999999999999999999999
Q ss_pred cCChhhhccccchhhhh--hhHHHHHHH
Q 013253 379 YIPEEARSTIMNFFRIP--LNIFVCVVL 404 (447)
Q Consensus 379 ~~p~~~r~~~~g~~~~~--~~~~~~~~l 404 (447)
..|++.||+.+|+.... .+..+++.+
T Consensus 409 ~aP~~~~g~~~g~~~l~~~~g~~l~~~~ 436 (475)
T TIGR00924 409 IAPQRLMGQMLGMWFLAQAMGSLLGGYL 436 (475)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987764 333444433
No 86
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.88 E-value=8.8e-20 Score=168.67 Aligned_cols=334 Identities=12% Similarity=0.073 Sum_probs=203.9
Q ss_pred chhhHHHHHHHHHHHhhhh--hcchhHhHhHhhcCCCCcc-hhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHH
Q 013253 36 NSFKNNYLLVYSLMMAGDW--LQGPYVYYLYSTYGFGKGE-IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTY 112 (447)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~--~~~~~l~~i~~~~g~s~~~-~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~ 112 (447)
+.+++..+.+|...++.+. -..-..|.+.+|+|+|+.| .|.+++..+....+..++.|+++||+|.|+++..+.+.+
T Consensus 23 ~~W~~~~~~lC~fGF~~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~W 102 (511)
T TIGR00806 23 KSWRVLVLYLCFYGFMAQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSF 102 (511)
T ss_pred cchhHHHHHHHHHHHHHHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 4444445555554444221 1133456778899999999 898888887777788889999999999999999999999
Q ss_pred HHHH-HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 013253 113 ILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD 191 (447)
Q Consensus 113 ~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~ 191 (447)
++.. +.++++++..+.+.|++.|++.|... +... ++..+-++..+... ......+..+|.+++++++++ ..
T Consensus 103 sl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~s-yI~~WfP~kER~ra-----tsi~~sg~~vG~~Ia~~L~ql-l~ 174 (511)
T TIGR00806 103 VCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSS-YIFSLVPPSRYQRA-----AAYSRAAVLLGVFLSSVLGQL-LV 174 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHCCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH-HH
Confidence 9876 77899999999999999999999998 6545 78877333333321 123334555666666677666 33
Q ss_pred ccccCccc-hhhhHHHHHHHHHHHHHHhccccCC------C---------------CCC---ch--------hHHHHHHH
Q 013253 192 SFSLGPVA-PFDAAACFLAIGMVIILSSWTENYG------D---------------PSE---SK--------DLLTQFRG 238 (447)
Q Consensus 192 ~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~------~---------------~~~---~~--------~~~~~~~~ 238 (447)
..+|++-. ..++......+++++.+ .+|..++ + +++ .. ...+.+..
T Consensus 175 s~gWr~y~~Ln~Isl~s~~~a~~~a~-~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 253 (511)
T TIGR00806 175 TLGWISYSTLNIISLVFMTFSVFLAL-FLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLS 253 (511)
T ss_pred hcCchhHHHHHHHHHHHHHHHHHHHH-hCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHH
Confidence 34554422 22233332333333322 3332111 0 000 00 00112223
Q ss_pred HHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCC-C--CchHHHHHHHHHHHHHHHHHHHHhhcCCCcchhH
Q 013253 239 AAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE-I--PHGFIFATFMLASMLGSSLASRLMARSPPRVESY 315 (447)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~ 315 (447)
..+...+|++++...+-..+...+ +..+.+|...+-++..+ . -.|.+-++..+.+.+.++..|++-.++.+.....
T Consensus 254 ~~~~~y~n~~vl~WSlWwa~a~~g-~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~ 332 (511)
T TIGR00806 254 ELVTIYRNPQLLLWSLWWVFNSAG-YYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLL 332 (511)
T ss_pred HHHHHhcCcchhhhhHHHHHHhhH-HHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHH
Confidence 444556677766666555444444 33344444333222111 1 1266777777778888999999855553322222
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhh
Q 013253 316 MQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRI 394 (447)
Q Consensus 316 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 394 (447)
+.+...+.+.++.+..... ..|+..++.++++..+....++...-+++...++.-|...|++++
T Consensus 333 l~v~s~~~~gll~~m~~t~---------------~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtf 396 (511)
T TIGR00806 333 IAVVSAIQAGLVFWMSQSH---------------DIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTF 396 (511)
T ss_pred HHHHHHHHHHHhhhhhccc---------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHH
Confidence 2222333333322221111 137889999999999999889999999999888888999998664
No 87
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.7e-19 Score=157.40 Aligned_cols=319 Identities=15% Similarity=0.140 Sum_probs=217.0
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHh
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGI 136 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~l~~~~~~~~~l~~~r~l~G~ 136 (447)
+|.++++.+|+|+|.++.|.+.+...+.-.+++++..+++.|+|.++.+..++++..++.+.-...+.+.++.+-.+.|.
T Consensus 32 gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~~~~L~~gt~l~G~ 111 (395)
T COG2807 32 GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLPLLFLGTLLAGA 111 (395)
T ss_pred hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 89999999999999999999999998888899999999999999999999999999999866333388889999999999
Q ss_pred hhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHHH
Q 013253 137 ATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIIL 216 (447)
Q Consensus 137 ~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~ 216 (447)
+.+.......+ ++.++-+ ++.+.....++.....+..+++.+.+.+... . .+||.....-+...+++++.-
T Consensus 112 gIav~nVLLPs-lIK~~Fp--k~~~~mtglYs~sl~~~aaLaa~lavpla~~----~-~gW~~aL~~WAl~allAl~~W- 182 (395)
T COG2807 112 GIAVINVLLPS-LIKRDFP--KRVGLMTGLYSTSLGAGAALAAALAVPLAQH----S-GGWRGALGFWALLALLALLIW- 182 (395)
T ss_pred hHHHHHHhhhH-HHHhhcc--cchhhHHhHHHHHHHHHHHHHhhhhhHHHHh----h-ccHHHHHHHHHHHHHHHHHHH-
Confidence 99999877744 6766522 2233344456666666666777766666654 3 245555555555555444333
Q ss_pred Hhcccc-CC-CCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhccccccccc-CCCCc-hHHHHHHHH
Q 013253 217 SSWTEN-YG-DPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPND-EEIPH-GFIFATFML 292 (447)
Q Consensus 217 ~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~i 292 (447)
+|.. ++ .++++.+ ..+...++|+|..|.+.+...+.+...|. ...|+|.+..|. .+... |...+...+
T Consensus 183 --lPq~~r~~~~~~~~~-----~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~-~~~WLP~ili~~G~sa~~aG~llsl~~l 254 (395)
T COG2807 183 --LPQALREQAASIATK-----LVSVRKVWRSPLAWQVTLFMGLQSLLYYI-VIGWLPAILIDRGLSAAEAGSLLSLMQL 254 (395)
T ss_pred --hhhcccccccccccc-----cccccccccCchhHHHHHHHHhhHHHHHH-HHHHHHHHHHHcCCCHHHhhhHHHHHHH
Confidence 3331 11 1111111 11223578999999999888887777676 699999988653 33322 788888899
Q ss_pred HHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHH
Q 013253 293 ASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSI 372 (447)
Q Consensus 293 ~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 372 (447)
..++.++....+.+|...++. ..........+..+-..+.+.. ......++.|++.|..+|..
T Consensus 255 ~~~~~~ll~P~la~R~~n~r~-~~~~~~~~~l~G~~G~~~~P~~----------------~~~lw~~llG~G~G~~F~la 317 (395)
T COG2807 255 AQLPTALLIPLLARRSKNQRP-LVVLALLLMLVGLVGLLLAPGQ----------------LPILWALLLGLGQGGAFPLA 317 (395)
T ss_pred HHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHHHHHHhhhh----------------HHHHHHHHHhCccchHHHHH
Confidence 999999999999998544442 1222222222222222222222 22333688999999999999
Q ss_pred HHHHhhcCChhhhccc-cchhh----h--hhhHHHHHHHHhhcc
Q 013253 373 MKMRSQYIPEEARSTI-MNFFR----I--PLNIFVCVVLYNVDA 409 (447)
Q Consensus 373 ~~~~~~~~p~~~r~~~-~g~~~----~--~~~~~~~~~l~~~~~ 409 (447)
...+.+..++.+++.. .|+.+ . +.++...+.+.|..+
T Consensus 318 L~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g 361 (395)
T COG2807 318 LTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG 361 (395)
T ss_pred HHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence 9999988777664422 22222 2 355566677777655
No 88
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.88 E-value=3.5e-19 Score=173.48 Aligned_cols=321 Identities=15% Similarity=0.120 Sum_probs=184.8
Q ss_pred chhHh-HhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhc-cCchhHHHHHHHHHHHHH-HHhcCc-hhHHHHHHHH
Q 013253 57 GPYVY-YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSC-ITKHSP-QYKILMIGRI 132 (447)
Q Consensus 57 ~~~l~-~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr-~Grr~~l~~~~~~~~i~~-l~~~~~-~~~~l~~~r~ 132 (447)
.++++ ++.+++|+|+.+.+++.+..........+++|+++|| +|||+.+..+.++.+++. ++++++ +.+.+.+.|+
T Consensus 41 ~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~ 120 (500)
T PRK09584 41 QGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMA 120 (500)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 44444 4458999999888877666544444445689999999 599999999999998875 556654 5667778899
Q ss_pred HHHhhhhhhhhhhhHHHHhhh-c-ccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHH
Q 013253 133 LGGIATSLLFSAFESWLVAEH-N-KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI 210 (447)
Q Consensus 133 l~G~~~~~~~~~~~~~~i~~~-~-~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~ 210 (447)
++|++.|...+...+ ++.|. + ++.++.+. ++ ....+..+|..++|.+++++.+.. +|+..|.+.++...+
T Consensus 121 l~gig~g~~~~~~~~-l~~~~f~~~~~~~~~~----~~-~~~~~~~iG~~~gp~i~g~l~~~~--g~~~~F~i~~i~~~i 192 (500)
T PRK09584 121 TIAVGNGLFKANPSS-LLSTCYEKDDPRLDGA----FT-MYYMSINIGSFFSMLATPWLAAKY--GWSVAFALSVVGMLI 192 (500)
T ss_pred HHHHhhhcccCCHHH-HHHHhcCCCchhhhhc----ch-HHHHHHHHHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHH
Confidence 999999988887755 77776 2 22222221 12 223345577777778888777644 566778776654333
Q ss_pred HH---HHHHHhccccCCCCC-CchhHHHHH---------------------------------------HH--HHHHHhc
Q 013253 211 GM---VIILSSWTENYGDPS-ESKDLLTQF---------------------------------------RG--AAVAIAS 245 (447)
Q Consensus 211 ~~---~~~~~~~~~~~~~~~-~~~~~~~~~---------------------------------------~~--~~~~~~~ 245 (447)
.. +......++..++++ ++.+..+.. .. ..++..|
T Consensus 193 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (500)
T PRK09584 193 TVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFAMKGAAR 272 (500)
T ss_pred HHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Confidence 32 222222333211111 101100000 00 0000111
Q ss_pred chhHHHHHHHHHhhhhhhhhhhhhccccccc----c-------cCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCc--c
Q 013253 246 DEKIALLGAIQSLFEGSMYTFVFLWTPALSP----N-------DEEIPHGFIFATFMLASMLGSSLASRLMARSPPR--V 312 (447)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~--~ 312 (447)
++.+.. +...+.....+. .....|.++. + +...+.+...+...+..++..++..++-+|.++| .
T Consensus 273 -~~~~~~-~~~~~~~i~f~~-~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~ 349 (500)
T PRK09584 273 -RKMIVA-FILMLEAIIFFV-LYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPM 349 (500)
T ss_pred -HHHHHH-HHHHHHHHHHHH-HHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCc
Confidence 122211 111121221121 2223333321 1 1122346677777777677766665555555443 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchh
Q 013253 313 ESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFF 392 (447)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~ 392 (447)
.+.+.++..+.++++..........+ ++-....++.+...++.+++.....|...+++.+..|++.||+.+|..
T Consensus 350 ~~~~~~G~~l~~l~f~~l~~~~~~~~------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~ 423 (500)
T PRK09584 350 PHKFAIGMVLCSGAFLVLPLGAKFAN------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSW 423 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHH
Confidence 22366666676766665444332211 111223346788899999999999999999999999999999999986
Q ss_pred hh
Q 013253 393 RI 394 (447)
Q Consensus 393 ~~ 394 (447)
..
T Consensus 424 ~l 425 (500)
T PRK09584 424 FL 425 (500)
T ss_pred HH
Confidence 54
No 89
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.87 E-value=1.1e-20 Score=179.58 Aligned_cols=302 Identities=12% Similarity=0.072 Sum_probs=201.2
Q ss_pred HhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHH-HHHHhcCchhHHHHHHHHHHHhhhhh
Q 013253 62 YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SCITKHSPQYKILMIGRILGGIATSL 140 (447)
Q Consensus 62 ~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i-~~l~~~~~~~~~l~~~r~l~G~~~~~ 140 (447)
.+.+|.+....|.+.+.++.++...++..++|.+.||++-.+.+....+.+++ +.+....+|++.+++.|++.|+.++.
T Consensus 71 g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~ 150 (495)
T KOG2533|consen 71 GLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESG 150 (495)
T ss_pred CCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcc
Confidence 45588888888999887777777778888999999999988888888888877 44667799999999999999999999
Q ss_pred hhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc----ccccCccchhhhHHHHHHHHHH
Q 013253 141 LFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD----SFSLGPVAPFDAAACFLAIGMV 213 (447)
Q Consensus 141 ~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~----~~~~~~~~~f~~~~~~~~~~~~ 213 (447)
.+|.... +++.+ ++|+.+.++.... ..+|.+++++++..+.+ ..-.+||+.|.+.+++.++..+
T Consensus 151 ~wP~~~~-~lg~wy~~~e~g~r~~~~~a~--------~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi 221 (495)
T KOG2533|consen 151 GWPGVVA-ILGNWYGKSERGLRMGIWYAS--------ASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGI 221 (495)
T ss_pred cchHHHH-HHHhhcChhhhhhhHHHHHHh--------cchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHh
Confidence 9999866 77777 5566666544333 33444444444444221 1224677889999988888777
Q ss_pred HHHHhccccCCCC---CCchh-----HH---------H-HHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccc
Q 013253 214 IILSSWTENYGDP---SESKD-----LL---------T-QFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALS 275 (447)
Q Consensus 214 ~~~~~~~~~~~~~---~~~~~-----~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (447)
+.++.+|+++.+. ++.++ .. + ......++.+++|++|...+...+.....++ ..+|+|.++
T Consensus 222 ~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~-~~~~lpl~l 300 (495)
T KOG2533|consen 222 VVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYG-FSYWLPLYL 300 (495)
T ss_pred eEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhcccc-HHHHHHHHH
Confidence 7766666654411 11100 00 0 1123566788999999999999888888776 589999999
Q ss_pred cccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCC---CcchhHHHHHHHHHHHHH-HHHHHhhhccCCCCCCCCccc
Q 013253 276 PNDEEIPH---GFIFATFMLASMLGSSLASRLMARSP---PRVESYMQIVFVVSSVSL-LLPIVTSFLVAPSNVKSGGIS 348 (447)
Q Consensus 276 ~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g---~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 348 (447)
++..+.+. +.+.....++++++.+++|.++||.. .++. .......+..... .........
T Consensus 301 ~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~-~~~~~~~~~~~~g~~~l~~~~~~------------ 367 (495)
T KOG2533|consen 301 KSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRL-LFIVFLCLYAIIGAISLLAAAVL------------ 367 (495)
T ss_pred HcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHHHHHhhccc------------
Confidence 87544544 55667778999999999999999953 2221 1111222211111 211111101
Q ss_pred cchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhcccc
Q 013253 349 FSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIM 389 (447)
Q Consensus 349 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~ 389 (447)
............+.....+......++....+.|....
T Consensus 368 ---~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~ 405 (495)
T KOG2533|consen 368 ---PGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTT 405 (495)
T ss_pred ---hHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHH
Confidence 12233334444455556678888888888777655443
No 90
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.87 E-value=1.4e-20 Score=178.60 Aligned_cols=238 Identities=22% Similarity=0.203 Sum_probs=177.6
Q ss_pred hhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhc--CchhHHHHHHHHHHHhhhhhh
Q 013253 65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH--SPQYKILMIGRILGGIATSLL 141 (447)
Q Consensus 65 ~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~--~~~~~~l~~~r~l~G~~~~~~ 141 (447)
.++++|+.|.|++++..+....+...+.|+++||+|.|+++..+.++.++++ +..+ ..+++.+++.|++||++.|..
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~ 145 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL 145 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence 4788999999999998888777888899999999999999999999999976 5543 456668899999999999999
Q ss_pred hhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHHHHhccc
Q 013253 142 FSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTE 221 (447)
Q Consensus 142 ~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 221 (447)
+|+... +.+.+.+...+.. +......|..+|.+++-++++++.+. .+||+..|++.+.+.++..++......|
T Consensus 146 ~pa~~~-i~~~W~P~~Ers~-----~~ail~~g~q~g~v~~mp~sg~lc~s-~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 146 FPAIGS-ILAKWAPPNERST-----FIAILTAGSQLGTIITMPVSGLLCES-SLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred Hhhhhc-eeeeECCHHHHHH-----HHHHHHHHHHHHHHHHHHhHHHHhcc-CCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 999866 7777733333322 22233345667788887888888865 4788899999888877655444333333
Q ss_pred cCCCCCC-chhHHHH-------------HHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---h
Q 013253 222 NYGDPSE-SKDLLTQ-------------FRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---G 284 (447)
Q Consensus 222 ~~~~~~~-~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 284 (447)
++.+++. .+++++. ...+++++++++.+|...+.........+. +..|.|.|+++.++.+. |
T Consensus 219 ~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~-l~~y~PtY~~~VL~f~v~~~G 297 (466)
T KOG2532|consen 219 SPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYL-LLTYLPTYLKEVLGFDVRETG 297 (466)
T ss_pred CcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHhCCChhhhh
Confidence 2222110 0111111 122578899999999988887777777665 69999999998887775 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCC
Q 013253 285 FIFATFMLASMLGSSLASRLMARSPP 310 (447)
Q Consensus 285 ~~~~~~~i~~~~~~~~~g~l~dr~g~ 310 (447)
...++..+...+..+++|.++||..+
T Consensus 298 ~~salP~l~~~~~k~~~g~lsD~l~~ 323 (466)
T KOG2532|consen 298 FLSALPFLAMAIVKFVAGQLSDRLTF 323 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888899999999999999999865
No 91
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.87 E-value=3.7e-19 Score=169.12 Aligned_cols=349 Identities=13% Similarity=0.002 Sum_probs=195.7
Q ss_pred hhhhhcchhHhHhHhhcCCCCcchhHH--HHHHHHhhhhhcccc-chhhhccCchhHHHHHHHHH-HH-HH-HH--hcCc
Q 013253 51 AGDWLQGPYVYYLYSTYGFGKGEIGQL--FIAGFGSSMLFGTIV-GSLADKQGRKRACVTYCLTY-IL-SC-IT--KHSP 122 (447)
Q Consensus 51 ~~~~~~~~~l~~i~~~~g~s~~~~g~~--~~~~~~~~~l~~~~~-G~l~Dr~Grr~~l~~~~~~~-~i-~~-l~--~~~~ 122 (447)
+..++..|.+|...+|.|.|.+++|.. ....+....+.+|++ ++..||+||||..++...+. +. .. +. ....
T Consensus 15 ~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~ 94 (390)
T TIGR02718 15 IPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDV 94 (390)
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcch
Confidence 344555899999999999999999986 355677777888877 55799999999976665332 22 11 22 1222
Q ss_pred h-hHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchh
Q 013253 123 Q-YKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPF 201 (447)
Q Consensus 123 ~-~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f 201 (447)
+ ...++....+.++..+...+.... +..|.. |++..+. .+.....|..+|..+++...+++.+.. +||.+|
T Consensus 95 ~~~~~~~~~~~~~~~~~a~~d~~~d~-~~~~~~-~~~~~~~----~~~~~~~g~~lG~~~g~~~~~~l~~~~--gw~~~f 166 (390)
T TIGR02718 95 AGAGWAVGLLACASLASATQDIATDG-MAAEHF-NGRTLAK----GNAVQIAGVMIGFFGGGAGTLVLFGKF--GQRPAF 166 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhC-CHhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHh--CHHHHH
Confidence 2 333344445555565666565544 444432 2222221 222334455667777776666666544 567888
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCC
Q 013253 202 DAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEI 281 (447)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (447)
++.+.+.++..+... ..+|++++++++++ +..++.++.+|+|+.+.......+....... ...+.+.|.++ .+.
T Consensus 167 ~~~a~l~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~-~G~ 240 (390)
T TIGR02718 167 LLVACVPLASLVCVL-WLKDRAVASPEAPL---ARRASLFRFFRRPLAWSLLALALLSAMTAVS-GFGLSKLYLVD-AGW 240 (390)
T ss_pred HHHHHHHHHHHHHHH-HcCCCCcCccccch---hhHHHHHHHHcCcCHHHHHHHHHHHHHHHHH-HHHHhhHHHHh-cCC
Confidence 888777665555443 33333222111111 1123455778888777665555554444333 34566777765 466
Q ss_pred Cc---hHHHHHHH-HHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHH
Q 013253 282 PH---GFIFATFM-LASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLG 357 (447)
Q Consensus 282 ~~---~~~~~~~~-i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (447)
+. +....... ...+++.++.|++.||+|+|+. +..+..+................ ....+.....
T Consensus 241 s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~--l~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 309 (390)
T TIGR02718 241 PLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRT--FILGVGLAGSLALLWFAQAAFWL---------APGIAVAWSC 309 (390)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHccc---------CCcHHHHHHH
Confidence 65 55555544 3566778999999999998873 33333332222221111111100 0001122333
Q ss_pred HHHHHhhhccchhHHHHHHhhcCCh-hhhccccchhhhh------hhHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 013253 358 FCTFEACVGIFWPSIMKMRSQYIPE-EARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMFGMCSIFLLVA 426 (447)
Q Consensus 358 ~~l~g~~~~~~~~~~~~~~~~~~p~-~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 426 (447)
..+.++..+...+..++...+..++ +.+++.+++.+.. .+..+++.+.+..+ +...+..++.+.+++
T Consensus 310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G--~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG--YAGGFLSGTVLAVLA 383 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHH
Confidence 3444556677777788887777766 7788888776653 33355556666533 434444444443333
No 92
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.86 E-value=1e-19 Score=174.87 Aligned_cols=333 Identities=14% Similarity=0.158 Sum_probs=232.0
Q ss_pred cchhhHHHHHHHHHHHh-hhhhc---chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHH
Q 013253 35 FNSFKNNYLLVYSLMMA-GDWLQ---GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCL 110 (447)
Q Consensus 35 ~~~~~~~~~~~~~~~~~-~~~~~---~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~ 110 (447)
...+.|.+....++... .+++. +.+.+.+.++++.+.++++|+.++......+.+|+.+.+.||+|.|++.+.+.+
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~ 119 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL 119 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence 45566776666655544 44444 556678889999999999999999998899999999999999999999999999
Q ss_pred HHHHHH-HHhcCchhHHHHHH-HHHHHhhhhhhhhhhhHHHHhhh--cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 013253 111 TYILSC-ITKHSPQYKILMIG-RILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG 186 (447)
Q Consensus 111 ~~~i~~-l~~~~~~~~~l~~~-r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~ 186 (447)
+..++. +.++++++|++++. -++.|+|.+..+..+.. ++..+ ++|+.. +.....|.++|..+-|.+.
T Consensus 120 v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiv-iv~~YF~kkR~lA--------~Gia~~GsG~G~~~~~~l~ 190 (509)
T KOG2504|consen 120 VAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVV-ILGTYFEKKRALA--------TGIAVSGTGVGTVVFPPLL 190 (509)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhh-hhhhHhHHHHHHH--------HhhhhccCCcceeeHHHHH
Confidence 999997 67999999877655 58899999999888755 77766 444443 3355568889999999999
Q ss_pred hhhhcccccCccchhhhHHHHHHHHHHHHHHhccccCC-----------------------------CCCCch-------
Q 013253 187 NLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYG-----------------------------DPSESK------- 230 (447)
Q Consensus 187 ~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~------- 230 (447)
..+.+..+| |..+++.+.+.+-.........|.... +.+...
T Consensus 191 ~~l~~~~G~--r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (509)
T KOG2504|consen 191 KYLLSKYGW--RGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNL 268 (509)
T ss_pred HHHHHHhCc--HHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccch
Confidence 999877666 455655555544444443333441000 000000
Q ss_pred -------hHHH--HHHHH----HHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHH
Q 013253 231 -------DLLT--QFRGA----AVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLAS 294 (447)
Q Consensus 231 -------~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~ 294 (447)
+..+ ..+.. ..++++++.++.+.+...+...+.+. ...++|.|.++ .+.+. +...+..++..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~-p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~ 346 (509)
T KOG2504|consen 269 ATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNV-PFVYLPSYAKS-LGLSSNDAAFLLSIIGVSD 346 (509)
T ss_pred hhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHH-HHHHHHHHHhh-cCCChhhhHHHHHHHHHhh
Confidence 0000 01111 14678888888888777777777665 46777877763 33333 77888899999
Q ss_pred HHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHH
Q 013253 295 MLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMK 374 (447)
Q Consensus 295 ~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 374 (447)
++++++.|++.|+...++......+....++........... +.......++|++.|........
T Consensus 347 i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~---------------~~l~~~~~~fG~~~g~~~~l~~~ 411 (509)
T KOG2504|consen 347 IIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTY---------------VGLIVFSILFGFCVGSFSSLTPV 411 (509)
T ss_pred hhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccH---------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987555333333444444443222211111 36677788888888877787778
Q ss_pred HHhhcCChhhhccccchhhhh
Q 013253 375 MRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 375 ~~~~~~p~~~r~~~~g~~~~~ 395 (447)
.+.|..+.+.-..+.|+....
T Consensus 412 i~~~~~g~~~l~~a~Gl~l~~ 432 (509)
T KOG2504|consen 412 ILVDLVGLEKLSNAYGLLLLF 432 (509)
T ss_pred HHHHHcChhhcchHHHHHHHH
Confidence 999999999988888876654
No 93
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.85 E-value=2.7e-20 Score=185.17 Aligned_cols=266 Identities=13% Similarity=0.130 Sum_probs=178.3
Q ss_pred hhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCc---------
Q 013253 53 DWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSP--------- 122 (447)
Q Consensus 53 ~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~--------- 122 (447)
.++..+.++.+.++|+++..+.|++.+...+...+..++.|++.||+||||.+.++.++++++. +.++.+
T Consensus 49 ~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~ 128 (633)
T TIGR00805 49 NGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYS 128 (633)
T ss_pred HHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccc
Confidence 3444777888999999999999988888888777888899999999999999999999999986 445432
Q ss_pred ------------------------------------------hhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhh
Q 013253 123 ------------------------------------------QYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQ 160 (447)
Q Consensus 123 ------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~ 160 (447)
.+..++++|+++|+|.+...+...+ ++.|+.++.++.
T Consensus 129 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~-~i~d~~~~~~~~ 207 (633)
T TIGR00805 129 TTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS-YIDDFAKSKNSP 207 (633)
T ss_pred ccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch-hhhccCCccccH
Confidence 2457789999999999999998866 899984333333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc-cc---------------C----ccchhhhHHHHHHHHHHHHHHhcc
Q 013253 161 QWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF-SL---------------G----PVAPFDAAACFLAIGMVIILSSWT 220 (447)
Q Consensus 161 ~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~-~~---------------~----~~~~f~~~~~~~~~~~~~~~~~~~ 220 (447)
..... ...+..+|+.+++.+++.+.+.. +| + |+..|++.+++.++..+... ..|
T Consensus 208 ~~~~i-----~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~-~~p 281 (633)
T TIGR00805 208 LYIGI-----LESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF-FFP 281 (633)
T ss_pred HHHHH-----HHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH-hCc
Confidence 22222 22234455555555555544321 11 2 56677777666655444333 334
Q ss_pred ccCCCC---C-----Cc-------h-------hHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhccccccccc
Q 013253 221 ENYGDP---S-----ES-------K-------DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPND 278 (447)
Q Consensus 221 ~~~~~~---~-----~~-------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (447)
++.+++ + +. + +..++..+..++++++|.++...+...+.....+. ...|.|.|+++.
T Consensus 282 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~-~~~~lP~yl~~~ 360 (633)
T TIGR00805 282 KALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNG-YITFLPKYLENQ 360 (633)
T ss_pred cccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 322111 0 00 0 00112233466789999998888777777776665 578999999988
Q ss_pred CCCCc---hHHHHHHHH-HHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHH
Q 013253 279 EEIPH---GFIFATFML-ASMLGSSLASRLMARSPPRVESYMQIVFVVSSVS 326 (447)
Q Consensus 279 ~~~~~---~~~~~~~~i-~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~ 326 (447)
++.++ +.+.....+ +.+++.+++|+++||++.+..+.+..+.....+.
T Consensus 361 ~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~ 412 (633)
T TIGR00805 361 YGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLS 412 (633)
T ss_pred cCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHH
Confidence 88877 444444444 5678999999999999866544444444443333
No 94
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.1e-19 Score=161.13 Aligned_cols=231 Identities=20% Similarity=0.234 Sum_probs=170.9
Q ss_pred hhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHhhhhhhhh
Q 013253 65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFS 143 (447)
Q Consensus 65 ~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~ 143 (447)
++.+-+++++|+++..-.+...+.+|+.|.+.||+|+|-.+++++.+...++ +.++.++++.++++|.+||+|.+....
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t 178 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT 178 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence 4556678899999999888899999999999999999999999999999987 779999999999999999999999999
Q ss_pred hhhHHHHhhh----cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHHHHhc
Q 013253 144 AFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSW 219 (447)
Q Consensus 144 ~~~~~~i~~~----~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 219 (447)
+..+ +++|. .+|++.++.. ..+.++|..++|.+|+.+.+..|. +.+|.+.++++++-..+.+...
T Consensus 179 sgla-mlAd~f~~d~er~~vmGia--------lgfislG~lvgPpfGGilYe~~Gk--~aPFlVL~~v~Lld~~L~l~vi 247 (464)
T KOG3764|consen 179 SGLA-MLADVFPEDNERGSVMGIA--------LGFISLGVLVGPPFGGILYEFAGK--SAPFLVLAIVLLLDGALQLLVI 247 (464)
T ss_pred hhHH-HHHHHcccchhhhHHHHHH--------HHHHhccceecCCcccchHhhcCC--cCcHHHHHHHHHHHHHHHHhee
Confidence 8877 77665 3345544422 224557888899999998876554 6899999988888777666444
Q ss_pred cccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHHHH
Q 013253 220 TENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASML 296 (447)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~ 296 (447)
+..+.++++.++ ....++++++|..+.........+.+ ..+..--++.+..+....+. |..+....+...+
T Consensus 248 ~p~~~~~~~~~~-----~~~~~~Ll~dP~I~~~agai~~~n~~-lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~i 321 (464)
T KOG3764|consen 248 EPTEMDPDSTEQ-----GTPMWSLLMDPYILLIAGAITFSNSS-LAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAI 321 (464)
T ss_pred CccccCcccccc-----CccHHHHHhCchHhhhhcchhhccch-HHHhCcccHHHHHHhccCCCcceeeeecccccchhc
Confidence 433322221111 22445778888887766555544444 22333344444555544332 6777777888999
Q ss_pred HHHHHHHHhhcCCCcc
Q 013253 297 GSSLASRLMARSPPRV 312 (447)
Q Consensus 297 ~~~~~g~l~dr~g~~~ 312 (447)
+..+.|.+.||++..+
T Consensus 322 g~~lfg~la~k~~~~~ 337 (464)
T KOG3764|consen 322 GTNLFGKLADKYPHLR 337 (464)
T ss_pred cCchHHHHHHhcCchh
Confidence 9999999999998555
No 95
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.84 E-value=2.1e-17 Score=157.09 Aligned_cols=380 Identities=14% Similarity=0.087 Sum_probs=213.1
Q ss_pred HHHhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhh----ccCchhHHHHHHHHH-HHHH-HHhcC
Q 013253 48 LMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD----KQGRKRACVTYCLTY-ILSC-ITKHS 121 (447)
Q Consensus 48 ~~~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~D----r~Grr~~l~~~~~~~-~i~~-l~~~~ 121 (447)
...++..++.++++++.+++|.++.+.+.+..++.+.+.+.+|+.|+++| |+||||.++.+..+. .++. +.+++
T Consensus 15 Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~ 94 (477)
T TIGR01301 15 GVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFA 94 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhC
Confidence 33456666688888888999999999999999999999999999999999 599999988864444 4454 45666
Q ss_pred chhH-----------------HHHHHHHHHHhhhhhhhhhhhHHHHhhhcc-cchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 013253 122 PQYK-----------------ILMIGRILGGIATSLLFSAFESWLVAEHNK-RGFEQQWLSITFSKAIFLGNGLVAILSG 183 (447)
Q Consensus 122 ~~~~-----------------~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~-r~~~~~~~~~~~~~~~~~g~~ig~~~~~ 183 (447)
++.. ..+++-.+..++.....+...+ +++|..+ +.++.+......+....+|+.+|..++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rA-LiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~ 173 (477)
T TIGR01301 95 ADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRA-FLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGA 173 (477)
T ss_pred chhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6543 2223333444577777777755 8888732 2222122222233333444444444443
Q ss_pred hhh--h---hh----hcccccCccchhhhHHHHHHHHHHHHHHhccccCCCCCCc-------hh----HHHHHHHHHHHH
Q 013253 184 LFG--N---LL----VDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSES-------KD----LLTQFRGAAVAI 243 (447)
Q Consensus 184 ~l~--~---~l----~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~~~~~~~~~~~~ 243 (447)
... . .. .+....+.+..|.+.+++.++...+.....+|++..+++. +. ..+..++-++.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 253 (477)
T TIGR01301 174 YSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFGELFGAF 253 (477)
T ss_pred HHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHHHHHHHH
Confidence 321 0 00 0011124567888888877777777766667754311110 00 011112222333
Q ss_pred hcc-hhHHHHHHHHHhhhhhhhhhhhhcccccc-cccCCCC--------ch-----HHHHHHHHHHHHHHHHHHHHhhcC
Q 013253 244 ASD-EKIALLGAIQSLFEGSMYTFVFLWTPALS-PNDEEIP--------HG-----FIFATFMLASMLGSSLASRLMARS 308 (447)
Q Consensus 244 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~-----~~~~~~~i~~~~~~~~~g~l~dr~ 308 (447)
.+- |..+.++....+...+.+.+ ..|...+. ++.++.+ .| .....+++...+.+++..++.+|+
T Consensus 254 ~~mP~~m~~l~~vqffsW~a~f~~-~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~ 332 (477)
T TIGR01301 254 KYLPRPVWILLLVTCLNWIAWFPF-ILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW 332 (477)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHH-HHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333 44556666666666666664 44444444 3333321 12 223344455667778888999999
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhhccC---CCCCCCC---ccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCCh
Q 013253 309 PPRVESYMQIVFVVSSVSLLLPIVTSFLVA---PSNVKSG---GISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPE 382 (447)
Q Consensus 309 g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~ 382 (447)
|+|+. ....+..+.++++....+.....+ +.+.++. +.....+..++.+.+.|+..+..+...++++++..|+
T Consensus 333 g~~k~-~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~ 411 (477)
T TIGR01301 333 GAGKR-LWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSN 411 (477)
T ss_pred ccchh-HHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccc
Confidence 86441 223444444444444433332100 0000000 0111125677788889999999999999999999996
Q ss_pred hh--hccccchhhhhhh------HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHh
Q 013253 383 EA--RSTIMNFFRIPLN------IFVCVVLYNVDAFPITVMFGMCSIFLLVASVLQ 430 (447)
Q Consensus 383 ~~--r~~~~g~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
+. .|..+|+.|...- .+..+.+....+......+...++..+++.+..
T Consensus 412 ~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~ 467 (477)
T TIGR01301 412 LGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLA 467 (477)
T ss_pred cCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHH
Confidence 44 4777888887521 122233333333344455555555555544443
No 96
>PRK09669 putative symporter YagG; Provisional
Probab=99.83 E-value=7.1e-18 Score=163.00 Aligned_cols=300 Identities=14% Similarity=0.143 Sum_probs=172.2
Q ss_pred hHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhc----cCchhH-HHHHHHHHHHHH-HHhcCch------hHHHH
Q 013253 61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK----QGRKRA-CVTYCLTYILSC-ITKHSPQ------YKILM 128 (447)
Q Consensus 61 ~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr----~Grr~~-l~~~~~~~~i~~-l~~~~~~------~~~l~ 128 (447)
+...+++|+|+.++|.++.+..+...+..|+.|+++|| +||||. ++.+.+..+++. +....++ ...++
T Consensus 34 ~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~ 113 (444)
T PRK09669 34 YFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYAC 113 (444)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence 34457899999999999999999999999999999998 787555 556666666654 3333332 44556
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHhhhc----ccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc-ccccCccchhhh
Q 013253 129 IGRILGGIATSLLFSAFESWLVAEHN----KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD-SFSLGPVAPFDA 203 (447)
Q Consensus 129 ~~r~l~G~~~~~~~~~~~~~~i~~~~----~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~-~~~~~~~~~f~~ 203 (447)
+...+.+.+.........+ +.+|.. +|.+..++ ......+|..+++.+..++...+.+ ....+|+..+.+
T Consensus 114 ~~~~l~~~~~t~~~ip~~a-l~~~~t~~~~eR~~l~~~----r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i 188 (444)
T PRK09669 114 VTYILLSLVYTAINVPYCA-MPGAITNDPRERHSLQSW----RFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMV 188 (444)
T ss_pred HHHHHHHHHHHhhcchHHH-hHHHhcCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence 6666667666655555434 666652 23332222 2223344444554444333333221 112356666666
Q ss_pred HHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc
Q 013253 204 AACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH 283 (447)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (447)
.+++..+..+......+|++.+++++ .++..+..++.+|||+++.+.....+....... .....+.|.++..+.+.
T Consensus 189 ~~ii~~v~~~~~~~~~~e~~~~~~~~---~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~ 264 (444)
T PRK09669 189 MGLLGVVLFFCCFFMTKERYTPEVDN---SSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVT-RGGATLYYVNYVLLRPD 264 (444)
T ss_pred HHHHHHHHHHHHhCCeEEecCCCCcC---CCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HhhhhheeeeeecCCHH
Confidence 66665555444443444432222111 122345667788999887775554443333221 22233333343333322
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHH
Q 013253 284 --GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTF 361 (447)
Q Consensus 284 --~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 361 (447)
+.......+..+++.++.+++.||+|+|+. ...+.....+........... + .+...+..++.
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~--~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~i~ 329 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRA--FKWTIVAFVILSALIFFIPPS---------N----VWLIFALNILF 329 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH--HHHHHHHHHHHHHHHHHhCcc---------h----HHHHHHHHHHH
Confidence 334444457778888899999999998873 333333222222211111111 0 12456666788
Q ss_pred HhhhccchhHHHHHHhhcCChhh
Q 013253 362 EACVGIFWPSIMKMRSQYIPEEA 384 (447)
Q Consensus 362 g~~~~~~~~~~~~~~~~~~p~~~ 384 (447)
+++.+...+..+++++|..+.++
T Consensus 330 g~~~~~~~~~~~am~ad~~d~~e 352 (444)
T PRK09669 330 NFIQNLTTPLQWSMFSDVVDYEE 352 (444)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999889999999999987433
No 97
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.82 E-value=6.4e-19 Score=154.43 Aligned_cols=329 Identities=15% Similarity=0.105 Sum_probs=195.0
Q ss_pred cchhhHHHHHHHHHHHhhhhhc----chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHH
Q 013253 35 FNSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCL 110 (447)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~----~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~ 110 (447)
+.+++|..........+.+.+. .-+.|...+.+|.+..|...+.........+++..+|..+|++|||+.+.....
T Consensus 72 fgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l 151 (528)
T KOG0253|consen 72 FGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFL 151 (528)
T ss_pred cccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHH
Confidence 4577888777777777766665 333445567788888888888777777666777799999999999999999988
Q ss_pred HHHH-HHHHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 013253 111 TYIL-SCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFG 186 (447)
Q Consensus 111 ~~~i-~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~ 186 (447)
...+ +.+.+.++|+..+++.|.+.|+|.|+ .|...+ +-.|. .+|....- .. .-+.+|.+....+.
T Consensus 152 ~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~-~yle~lp~~~r~~~~V--------~~-~~waig~v~ea~la 220 (528)
T KOG0253|consen 152 VTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSA-IYLEFLPSSHRWLLTV--------MS-FFWAIGQVFEALLA 220 (528)
T ss_pred HHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHH-HHHHhccCcCCCcchh--------HH-HHHHHHHHHHHHHH
Confidence 8877 45889999999999999999999999 576645 44555 33333221 11 23556777777777
Q ss_pred hhhhcccccCccchhhhHHHHHHHHHHHHHHhccccCC------CCCCchhHHHHHH-----------------------
Q 013253 187 NLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYG------DPSESKDLLTQFR----------------------- 237 (447)
Q Consensus 187 ~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~----------------------- 237 (447)
-..+.+.+|||++.+.. ....+...+ .++.||+++ ++.++-+..+++.
T Consensus 221 w~vm~~~gwr~~l~~~~--~pl~~~a~f-~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e 297 (528)
T KOG0253|consen 221 WGVMSNFGWRYLLFTSS--TPLMFAARF-LVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQE 297 (528)
T ss_pred HHHHHhhhHHHHHHHHH--hHHHHHHHH-HhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhh
Confidence 77777777877643332 222222222 224565432 2211111111110
Q ss_pred ----------------HHHHHHhcchhHHHHHH---HHHhhhhhhhhhhh-----------------hcccccccccC--
Q 013253 238 ----------------GAAVAIASDEKIALLGA---IQSLFEGSMYTFVF-----------------LWTPALSPNDE-- 279 (447)
Q Consensus 238 ----------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-----------------~~~~~~~~~~~-- 279 (447)
.....++. |++....+ ...+.+...|+... -..|.+.+...
T Consensus 298 ~~~~~~~~~~a~ke~rg~~~nLls-p~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c 376 (528)
T KOG0253|consen 298 ESDLDDSKSSAAKEVRGGTTNLLS-PKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANC 376 (528)
T ss_pred hhchhhhhhccccccccchHhhcC-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcC
Confidence 00111111 11111111 11111111111111 12222222110
Q ss_pred C-CCc-hH-HHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHH
Q 013253 280 E-IPH-GF-IFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLL 356 (447)
Q Consensus 280 ~-~~~-~~-~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (447)
. .+. .+ -.........+|.++.+++.||+|||++ +.....+.++........... + ...+
T Consensus 377 ~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkT--Mal~l~~f~iflfll~~c~~r---n------------~~tv 439 (528)
T KOG0253|consen 377 PLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKT--MALSLILFGIFLFLLTTCKTR---N------------AYTV 439 (528)
T ss_pred CccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHhcCc---c------------hhHH
Confidence 0 111 11 1234568899999999999999999985 555555555444433222111 0 3344
Q ss_pred HHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 357 GFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 357 ~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
..+...++....+...+.|..|.+|+..|+++.|..+..
T Consensus 440 llf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsm 478 (528)
T KOG0253|consen 440 LLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSM 478 (528)
T ss_pred HHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhH
Confidence 455556666777778899999999999999999987764
No 98
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.81 E-value=2.4e-18 Score=151.88 Aligned_cols=303 Identities=17% Similarity=0.174 Sum_probs=174.2
Q ss_pred hHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh
Q 013253 75 GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH 153 (447)
Q Consensus 75 g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~ 153 (447)
|.+-+...+...+.++.+|.++||+|||++++++++..+++. +.+.+.|+..+.++|++.|+.-|...+.- + +++|.
T Consensus 71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~r-A-iisdV 148 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIR-A-IISDV 148 (451)
T ss_pred hhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHH-H-HHHhh
Confidence 455555556666888899999999999999999999999986 67999999777777999999999886653 5 88887
Q ss_pred ---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHH----HHHHHHHHhccccCCCC
Q 013253 154 ---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA----IGMVIILSSWTENYGDP 226 (447)
Q Consensus 154 ---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~----~~~~~~~~~~~~~~~~~ 226 (447)
+.|+..++..... .++|.++||.+|+++.+..+-.-+++|.....+.. ........+.||+-+.+
T Consensus 149 ~sek~r~l~ms~v~~a--------~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~r 220 (451)
T KOG2615|consen 149 VSEKYRPLGMSLVGTA--------FGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLR 220 (451)
T ss_pred cChhhccceeeeeehh--------hhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccch
Confidence 5566655533333 33555666666666554111111244444322222 11233334677753322
Q ss_pred CCc---hhHHH------HHHH-H---HHHHhcchhHHH------HHHHHHhhhhhhhhhhhhcccccccccCCCCc---h
Q 013253 227 SES---KDLLT------QFRG-A---AVAIASDEKIAL------LGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---G 284 (447)
Q Consensus 227 ~~~---~~~~~------~~~~-~---~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 284 (447)
++. .+..+ +..+ . .-...||++... .....-+.....+....++.+.+..++++.++ |
T Consensus 221 k~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G 300 (451)
T KOG2615|consen 221 KRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQG 300 (451)
T ss_pred hhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhhe
Confidence 222 11100 0000 0 011233332221 11111111222222234444445456677665 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH--hhhccCCCCCCCCccccchhhHHHHHHHHH
Q 013253 285 FIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIV--TSFLVAPSNVKSGGISFSGSLQLLGFCTFE 362 (447)
Q Consensus 285 ~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 362 (447)
.+++..++.+.+.+....+..||..... .+.....+..+.+.+ ......+ .....+..+..
T Consensus 301 ~vl~~tGl~m~~~ql~~~~~l~~~~~~~-----~a~l~~~l~~~vP~~llls~~~~~------------~~l~~~s~l~s 363 (451)
T KOG2615|consen 301 KVLSTTGLLMLVIQLALVPILPRYKGNI-----KAVLLFSLLLIVPAFLLLSLARTP------------VVLYLGSTLKS 363 (451)
T ss_pred eeeehhhHHHHHHHHhccccccccccch-----hhHHHHHHHHHHHHHHHHhccccc------------hhhhHHHHHHH
Confidence 7777777777776666666666653111 111111222222222 2222111 25677788888
Q ss_pred hhhccchhHHHHHHhhcCChhhhccccchhhhh------hhHHHHHHH
Q 013253 363 ACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVL 404 (447)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l 404 (447)
+......+....++....|+++||+.+|+.+.. .++++++.+
T Consensus 364 f~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i 411 (451)
T KOG2615|consen 364 FSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVI 411 (451)
T ss_pred HHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhee
Confidence 888888899999999999999999999998764 444555444
No 99
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.81 E-value=4.2e-20 Score=166.72 Aligned_cols=345 Identities=13% Similarity=0.075 Sum_probs=188.9
Q ss_pred hHHHHHHHHHHHhhhhhc-------chhHhHhHhhcC-------CCCcchhHHHHHHHHhhhhhccccchhhhccCchhH
Q 013253 39 KNNYLLVYSLMMAGDWLQ-------GPYVYYLYSTYG-------FGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRA 104 (447)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~-------~~~l~~i~~~~g-------~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~ 104 (447)
+.+.+.+.....+.|.++ .|.+..++ +| .++...+.+..+.++...+++++.|++.||+|||++
T Consensus 39 ~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY--~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~v 116 (538)
T KOG0252|consen 39 HFKAIIIAGMGFFTDSYDLFSISLVTKILGYLY--YHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKV 116 (538)
T ss_pred HHHHHHHhhhhhcccchhhhhHHHHHHHHHHHh--cCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 334556666677777777 33333333 22 334444566666666666777789999999999999
Q ss_pred HHHHHHHHHHHH-HHhcCc-------hhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHH
Q 013253 105 CVTYCLTYILSC-ITKHSP-------QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFL 173 (447)
Q Consensus 105 l~~~~~~~~i~~-l~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~ 173 (447)
+...+++..+++ ++++.. -..++...|++.|+|.|+.+|...+ +.+|. ++|+...+..-...+.+...
T Consensus 117 YG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAt-I~SE~an~~~RGa~iaavFa~Qg~Gila 195 (538)
T KOG0252|consen 117 YGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSAT-IMSESANKKTRGAFIAAVFAMQGFGILA 195 (538)
T ss_pred hhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHH-HhhhhhhhccccceeEEEEEecchhHhh
Confidence 999999998876 555421 2458899999999999999999844 88888 55666665555555555555
Q ss_pred HHHHHHHHhhhhhhhhhc-----ccccCccchhhhHHHHHHHHHHHHHHhccccCCCC----CC---c-hhHHHHHH---
Q 013253 174 GNGLVAILSGLFGNLLVD-----SFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDP----SE---S-KDLLTQFR--- 237 (447)
Q Consensus 174 g~~ig~~~~~~l~~~l~~-----~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~-~~~~~~~~--- 237 (447)
|..++.++...+-..+-. +...-||..+.+..+..+..+...+ ..||++.-+ ++ + ++..++..
T Consensus 196 G~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl-~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~ 274 (538)
T KOG0252|consen 196 GGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRL-KMPETARYTALVSKKLKQAAGDMKKVLSVDI 274 (538)
T ss_pred ccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcchhHHHHhhcCHhhhhhcccccccccc
Confidence 555555444433222221 1223488888887777776666655 566643211 00 0 00000000
Q ss_pred -----------------HHHHHHhcc---hhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc-----------hHH
Q 013253 238 -----------------GAAVAIASD---EKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH-----------GFI 286 (447)
Q Consensus 238 -----------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 286 (447)
+.+...+.. ++.+..+...++.-.+.|. ...+....+++ .+..+ +..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~-~nL~~s~I~~~-ig~~~~~~~~~~~~~vA~~ 352 (538)
T KOG0252|consen 275 EAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYG-QNLFQSVIFSA-IGVIPSANTYHELFKVAEG 352 (538)
T ss_pred chhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-cccHHHHHHHh-hccCCCcchHHHHHHHHHH
Confidence 001111111 2222223333333333333 23333333321 11111 111
Q ss_pred HHHHH-HHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHH-hh
Q 013253 287 FATFM-LASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFE-AC 364 (447)
Q Consensus 287 ~~~~~-i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g-~~ 364 (447)
..+.. .+.++|..+...++|++||+. +.+.++.+..+.........+... +.. ..++...+.. ++
T Consensus 353 ~~iia~~~~vPGyw~tv~~id~iGRk~--iq~~GF~~~~i~~~~~~~~y~~~~-------~~~----Gf~v~y~l~~ff~ 419 (538)
T KOG0252|consen 353 NLIIAVCSTVPGYWFTVYFIDIIGRKY--IQLMGFFIMTIFFFVIAGPYNQLE-------NTI----GFVVLYSLTFFFG 419 (538)
T ss_pred HHHHHHHccCCceeEEEEEeehhhhHH--HHHhhHHHHHHHHHHHcCCccccc-------ccC----ceeehHHHHHHHH
Confidence 11222 334557777788999999998 355556555555544433222100 001 1122222222 22
Q ss_pred hccchhHHHHHHhhcCChhhhccccchhhhh--hhHHHHH
Q 013253 365 VGIFWPSIMKMRSQYIPEEARSTIMNFFRIP--LNIFVCV 402 (447)
Q Consensus 365 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~--~~~~~~~ 402 (447)
.-........+.+|.+|.+.|++..|+.... .+.+++.
T Consensus 420 NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~ 459 (538)
T KOG0252|consen 420 NFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGA 459 (538)
T ss_pred hcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHH
Confidence 2234456677889999999999999997664 3444443
No 100
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.80 E-value=2.5e-17 Score=151.72 Aligned_cols=323 Identities=13% Similarity=0.078 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHhhhhhcchhHhHhHhh-cCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHH--HH
Q 013253 40 NNYLLVYSLMMAGDWLQGPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL--SC 116 (447)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i--~~ 116 (447)
+..-..++...+..+...|+.+...++ .|+|.+|+|.++++..+...+.+|+.|.++||.|.||-++.......+ +.
T Consensus 10 ~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~p 89 (412)
T PF01306_consen 10 WWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGP 89 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHH
Confidence 334444455555666668888776664 899999999999999999999999999999999987766555433322 22
Q ss_pred --HHhcC----chh-HHHHHHHHHHHhhhhhhhhhhhHHHHhhh-cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 013253 117 --ITKHS----PQY-KILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL 188 (447)
Q Consensus 117 --l~~~~----~~~-~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~ 188 (447)
...+. .|. ...+++-+..|+......|...+ ++.+. ++.+..-+..+.. .++|.+++..++|.
T Consensus 90 ff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea-~~er~sr~~~feYG~~R~w--------GSig~ai~s~~~G~ 160 (412)
T PF01306_consen 90 FFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEA-YAERVSRRNGFEYGRARMW--------GSIGFAIASLLAGI 160 (412)
T ss_dssp HHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHH-HHHHHHHHHSS-HHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH-HHHHHHHHhcCCcchHHHH--------hhHHHHHHHHHhhe
Confidence 11222 222 12233333334444444444444 43333 2233333333332 22444444555555
Q ss_pred hhcccccCccchhhhHHHHHHHHHHHHHHhccccCCC--CCCc--hhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhh
Q 013253 189 LVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGD--PSES--KDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMY 264 (447)
Q Consensus 189 l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (447)
+.+ ++....|++.....++..++.....|+++++ .++. .+..+...++..+++|+|++|.+.+..........
T Consensus 161 L~~---i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~ 237 (412)
T PF01306_consen 161 LFN---INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYD 237 (412)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred eee---eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 543 2334567765555444444433233332211 1111 11111112345678899999987665544333322
Q ss_pred hhhhhcccccccccCCC-----Cc-hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccC
Q 013253 265 TFVFLWTPALSPNDEEI-----PH-GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVA 338 (447)
Q Consensus 265 ~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 338 (447)
. .....|.|....++. .. |...+...+.+++.-.+.+++.+|+|.|+. +.+...+..+=.....+....
T Consensus 238 v-fdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~--Lllag~i~~iRi~~~~~~~~~-- 312 (412)
T PF01306_consen 238 V-FDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNL--LLLAGVIMAIRIIGSGFATNP-- 312 (412)
T ss_dssp H-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHT--SH--
T ss_pred H-HHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhH--HHHHHHHHHHHHHHHhhhcch--
Confidence 2 222233333322221 11 677777778899999999999999999883 555444444433333322222
Q ss_pred CCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchh
Q 013253 339 PSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFF 392 (447)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~ 392 (447)
+.+...-.+.++..........-++++.+|++..++...+.
T Consensus 313 -------------~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~ 353 (412)
T PF01306_consen 313 -------------WVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVG 353 (412)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Confidence 57788889999999999999999999999999988877664
No 101
>PRK09848 glucuronide transporter; Provisional
Probab=99.79 E-value=9.6e-17 Score=155.36 Aligned_cols=316 Identities=11% Similarity=0.030 Sum_probs=176.7
Q ss_pred hcchhHhH-hHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhcc----CchhHH-HHHHHHHHHH-HHH-h----cCc
Q 013253 55 LQGPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ----GRKRAC-VTYCLTYILS-CIT-K----HSP 122 (447)
Q Consensus 55 ~~~~~l~~-i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~----Grr~~l-~~~~~~~~i~-~l~-~----~~~ 122 (447)
+..++++. +.+++|+++.++|.+.....+...+..|+.|+++||. ||||.. ..+.+...+. .+. . +.+
T Consensus 26 ~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (448)
T PRK09848 26 MGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSH 105 (448)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCc
Confidence 33455443 3466799999999999999999999999999999996 777755 4555544443 222 1 112
Q ss_pred h--hHHHHHHHHHHHhhhhhhhhhhhHHHHhhh----cccchhhhHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhccccc
Q 013253 123 Q--YKILMIGRILGGIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSK-AIFLGNGLVAILSGLFGNLLVDSFSL 195 (447)
Q Consensus 123 ~--~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~----~~r~~~~~~~~~~~~~-~~~~g~~ig~~~~~~l~~~l~~~~~~ 195 (447)
+ ....+....+.+++.+...+...+ +..|. ++|.+..+......+. ....+..+++.+++..++.. ..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~a-l~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~----~~ 180 (448)
T PRK09848 106 SSKVVYAYLTYMGLGLCYSLVNIPYGS-LATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEM----VS 180 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccHhh-hhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch----hh
Confidence 2 223444556778777777765544 44433 3343332222111111 12233333444433222111 11
Q ss_pred CccchhhhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccc
Q 013253 196 GPVAPFDAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALS 275 (447)
Q Consensus 196 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (447)
+|.....+..++..+..+......||+.++++++ ++..+..++++|||+++...+...+....... ...+.|.|.
T Consensus 181 ~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~----~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~-~~~~~~~~~ 255 (448)
T PRK09848 181 VYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQ----PSLKISLQTLKRNRPLFMLCIGALCVLISTFA-VSASSLFYV 255 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCcEeccCCCccC----CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HhhhheeeE
Confidence 1111111222222222223332345543222221 13344567789999988877666665555444 455677777
Q ss_pred cccCCCCc--hHHHHH-HHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchh
Q 013253 276 PNDEEIPH--GFIFAT-FMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGS 352 (447)
Q Consensus 276 ~~~~~~~~--~~~~~~-~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (447)
++..+.+. +..... ..++.+++.++.+++.||+|+|+. +..+..+..++.......... + .+
T Consensus 256 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~--~~~g~~~~~i~~~~~~~~~~~---------~----~~ 320 (448)
T PRK09848 256 RYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNT--FLIGALLGTCGYLLFFWVSVW---------S----LP 320 (448)
T ss_pred eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH--HHHHHHHHHHHHHHHHHcCch---------h----HH
Confidence 77777655 323223 345677889999999999998873 444544444443332221100 0 13
Q ss_pred hHHHHHHHHHhhhccchhHHHHHHhhcCChhh-------hccccchhhhh
Q 013253 353 LQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA-------RSTIMNFFRIP 395 (447)
Q Consensus 353 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~-------r~~~~g~~~~~ 395 (447)
.......+.+++.+...+..+++.+|..|+++ +|...|+.++.
T Consensus 321 ~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~ 370 (448)
T PRK09848 321 VALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFT 370 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHH
Confidence 44556777888999889999999999887653 36666666653
No 102
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.79 E-value=1.3e-16 Score=153.78 Aligned_cols=313 Identities=13% Similarity=0.062 Sum_probs=182.5
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G 135 (447)
...++.+.+|+|-+ ....|+.....+...+..++.|+++|.+|||..++.+.++..+|. +++-++|...++.+..+.|
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~G 142 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYG 142 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHH
Confidence 56678899999875 455566666666677788899999999999999999999999987 6799999999999999999
Q ss_pred hhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHH
Q 013253 136 IATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII 215 (447)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~ 215 (447)
+|.|...... . .++|..+.+++.-. .. ............++.++..+..+.+| |+.|++..+...+.++..
T Consensus 143 vgaG~~~~~~-~-~isEl~p~k~R~~~----~~-~~~~~~i~~~~~~~~ia~~~~~~~~W--Rw~~~~~~i~~~i~~vl~ 213 (599)
T PF06609_consen 143 VGAGVQELAA-L-AISELVPNKWRGLG----LA-IASIPFIITTWISPLIAQLFAAHSGW--RWIFYIFIIWSGIALVLI 213 (599)
T ss_pred HhhHHHHHHH-H-HHHHhcccchhhhH----hH-HHHHHHHhhhcccHHHHHHhccCCCc--chHHHHHHHHHHHHHHHH
Confidence 9987776442 3 57888433333211 11 11122223333455565555544455 555666555544443332
Q ss_pred H-HhccccCCCC--C--CchhHHHHHHH-------------------------H--------------------------
Q 013253 216 L-SSWTENYGDP--S--ESKDLLTQFRG-------------------------A-------------------------- 239 (447)
Q Consensus 216 ~-~~~~~~~~~~--~--~~~~~~~~~~~-------------------------~-------------------------- 239 (447)
. +..|+++.+. + ..++..++++- +
T Consensus 214 ~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~ 293 (599)
T PF06609_consen 214 FFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWF 293 (599)
T ss_pred HHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhh
Confidence 2 2344332211 1 11111111100 0
Q ss_pred --------HHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCC------chHHHHHHHHHHHHHHHHHHHHh
Q 013253 240 --------AVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIP------HGFIFATFMLASMLGSSLASRLM 305 (447)
Q Consensus 240 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~g~l~ 305 (447)
..+++|++|.+...+...+.....+.....+.|......++.+ .+......+.+...+..+.+.+.
T Consensus 294 ~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~ 373 (599)
T PF06609_consen 294 GAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLF 373 (599)
T ss_pred ccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHH
Confidence 0135555444444333333333333334455565444333332 25555667788888888899999
Q ss_pred hcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhh
Q 013253 306 ARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEAR 385 (447)
Q Consensus 306 dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r 385 (447)
.+++|-|. .+..+.......+.+....... +. . ..+...++.+++.|.........++-..|++.-
T Consensus 374 ~~ir~~Kw-~li~~~~~~ta~~Gama~~~~~-n~--------~----~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~i 439 (599)
T PF06609_consen 374 SKIRHIKW-QLIFGSVLMTAFCGAMAAVRPD-NK--------N----AAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDI 439 (599)
T ss_pred HHccchhH-HHHHHHHHHHHHHHHHHHccCC-Cc--------c----hHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHH
Confidence 88865553 2334433333332332222111 11 1 234556677778877777777777788899988
Q ss_pred ccccchhh
Q 013253 386 STIMNFFR 393 (447)
Q Consensus 386 ~~~~g~~~ 393 (447)
+++.|+..
T Consensus 440 g~a~gL~~ 447 (599)
T PF06609_consen 440 GTATGLTG 447 (599)
T ss_pred HHHHHHHH
Confidence 87766543
No 103
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.79 E-value=4.5e-16 Score=149.04 Aligned_cols=342 Identities=12% Similarity=0.095 Sum_probs=201.7
Q ss_pred hHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHH-HH-HHhc-Cch-hHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 013253 75 GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SC-ITKH-SPQ-YKILMIGRILGGIATSLLFSAFESWLV 150 (447)
Q Consensus 75 g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i-~~-l~~~-~~~-~~~l~~~r~l~G~~~~~~~~~~~~~~i 150 (447)
+...++..+...+..|+.|.++|+-|+||.++....+... ++ ...+ .++ ++...+.-++.-++.+.......+ ++
T Consensus 73 ~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna-~L 151 (477)
T PF11700_consen 73 LYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA-YL 151 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 4566677777888899999999999988887776655544 43 3333 344 433344444444555555554444 66
Q ss_pred hhhcccchh--------------------------hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc------ccccCcc
Q 013253 151 AEHNKRGFE--------------------------QQWLSITFSKAIFLGNGLVAILSGLFGNLLVD------SFSLGPV 198 (447)
Q Consensus 151 ~~~~~r~~~--------------------------~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~------~~~~~~~ 198 (447)
.|..++... .. ..+.+...|+ +|.++.-.+.-.+.. ...+.-|
T Consensus 152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----vS~~G~a~Gy-~G~~v~l~i~l~~~~~~~~~~~~~~~~r 226 (477)
T PF11700_consen 152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGR----VSGLGWALGY-IGGLVALLISLLLVISPGSTASNTWAIR 226 (477)
T ss_pred HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhch----hHHHHHHHHH-HHHHHHHHHHHHHHHcCCCccccchhhh
Confidence 555222111 22 2222333333 333332222221111 1123446
Q ss_pred chhhhHHHHHHHHHHHHHHhccccCC-CCCC-ch----hHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhccc
Q 013253 199 APFDAAACFLAIGMVIILSSWTENYG-DPSE-SK----DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTP 272 (447)
Q Consensus 199 ~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (447)
..+.+.++..++..+......||+++ ++.+ .+ ...+++.+..++..|+|......+...++..+... +.....
T Consensus 227 ~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~t-i~~~~~ 305 (477)
T PF11700_consen 227 VAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNT-IISFAG 305 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 66666666655555555555666544 1111 11 22355566777888889888888888887777666 577777
Q ss_pred ccccccCCCCch---HHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH--hhhccCCCCCCCCcc
Q 013253 273 ALSPNDEEIPHG---FIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIV--TSFLVAPSNVKSGGI 347 (447)
Q Consensus 273 ~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 347 (447)
.|.++..+.+.. .......+.+++|+++.+++.||+|.|+.+.+........+......+ .....+
T Consensus 306 i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g--------- 376 (477)
T PF11700_consen 306 IYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFG--------- 376 (477)
T ss_pred HHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccC---------
Confidence 788888888773 334556688999999999999999998433344443333222222211 111100
Q ss_pred ccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh------hhHHHHHHHHhhcccchHHHHHHHHH
Q 013253 348 SFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMFGMCSI 421 (447)
Q Consensus 348 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~ 421 (447)
....+.+.+..++.|+..|..++...++.+|..|+++.+.-+|++.+. .|+++-+.+.+.++ +....+....+
T Consensus 377 ~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg-~~r~g~~~l~~ 455 (477)
T PF11700_consen 377 LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG-SQRYGFLFLLV 455 (477)
T ss_pred cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhHHHHHHH
Confidence 001245677788899999999999999999999999999999998874 44455555555544 23333333344
Q ss_pred HHHHHHHHhhhh
Q 013253 422 FLLVASVLQRRL 433 (447)
Q Consensus 422 ~~~~~~~~~~~~ 433 (447)
+.++...+....
T Consensus 456 lf~~gl~ll~~v 467 (477)
T PF11700_consen 456 LFLIGLILLFFV 467 (477)
T ss_pred HHHHHHHHHhhc
Confidence 444444443333
No 104
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.79 E-value=2.3e-17 Score=158.62 Aligned_cols=302 Identities=17% Similarity=0.162 Sum_probs=194.1
Q ss_pred hHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhh----ccCchhHHH-HHHHHHHHHH-HHhcC-c-------hhHH
Q 013253 61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD----KQGRKRACV-TYCLTYILSC-ITKHS-P-------QYKI 126 (447)
Q Consensus 61 ~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~D----r~Grr~~l~-~~~~~~~i~~-l~~~~-~-------~~~~ 126 (447)
+...+..|+++..+|.+..+.-+...+..|+.|.++| |+||||..+ ++.+..+++. ++... + ....
T Consensus 26 ~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~ 105 (428)
T PF13347_consen 26 YFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVW 105 (428)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHH
Confidence 4445778999999999999999999999999999999 899877655 5667777775 33333 3 2234
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHhhh----cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc-cCccchh
Q 013253 127 LMIGRILGGIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS-LGPVAPF 201 (447)
Q Consensus 127 l~~~r~l~G~~~~~~~~~~~~~~i~~~----~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~-~~~~~~f 201 (447)
+.+..++..++.........+ +..|. ++|.+..+.. .....+|..+...+.+.+...+.+... .+|+...
T Consensus 106 ~~~~~~l~~~~~t~~~i~~~a-l~~~lt~~~~~R~~l~~~~----~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~ 180 (428)
T PF13347_consen 106 LFVFYILFDIAYTFVQIPYNA-LIPELTPDPDERTRLSSWR----MIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMA 180 (428)
T ss_pred HHHHHHHHHHhhhhccCchhh-cCccccccHhhhhhHHHHH----HHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHH
Confidence 566666778887777666545 65555 3344433322 223333443344444444433332221 2566666
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCC
Q 013253 202 DAAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEI 281 (447)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (447)
.+.+++..+.........+|++++.+ .++...+.++..++++|||+++.+.....+....... .....+.|.++..+.
T Consensus 181 ~v~~iv~~v~~~i~~~~~ke~~~~~~-~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~-~~~~~~y~~~~vl~~ 258 (428)
T PF13347_consen 181 LVLAIVGLVFFLITFFFVKERSVEVT-EQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFAL-MNTFLPYYFTYVLGN 258 (428)
T ss_pred HHHHHHHHHHhhhhhheeeecccccc-ccccccccccchhhhcccchHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHhcC
Confidence 66666666666665555566222222 2222334556677889999888776666655444332 344555555555444
Q ss_pred Cc--hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHH
Q 013253 282 PH--GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFC 359 (447)
Q Consensus 282 ~~--~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (447)
+. +.......+..+++.++.++++||+|+|+. ...+..+..+......+.... + .+...+...
T Consensus 259 ~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~--~~~~~~~~~~~~~~~~~~~~~-~------------~~~~~i~~~ 323 (428)
T PF13347_consen 259 EGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKV--YIIGLLLAALGFLLLFFLGPG-S------------PWLVLILFI 323 (428)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHccceee--hhhhHHHHHHHHHHHHHHHhh-h------------HHHHHHHHH
Confidence 43 556666778899999999999999999984 555555555554444433311 0 147788888
Q ss_pred HHHhhhccchhHHHHHHhhcCChhh
Q 013253 360 TFEACVGIFWPSIMKMRSQYIPEEA 384 (447)
Q Consensus 360 l~g~~~~~~~~~~~~~~~~~~p~~~ 384 (447)
+.|++.+..++..+++.+|..+.++
T Consensus 324 l~gi~~~~~~~~~~a~~ad~id~~e 348 (428)
T PF13347_consen 324 LAGIGYGAFFVIPWAMLADVIDYDE 348 (428)
T ss_pred HhHhhhcccccccccccccchhhHH
Confidence 9999999999999999999988654
No 105
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.78 E-value=2.3e-16 Score=153.52 Aligned_cols=309 Identities=14% Similarity=0.135 Sum_probs=170.3
Q ss_pred chhHhHhH-hhcCCCCcchhHHHHHHHHhhhhhccccchhhh----ccCc-hhHHHHHHHHHHHHH-HHhcCch------
Q 013253 57 GPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD----KQGR-KRACVTYCLTYILSC-ITKHSPQ------ 123 (447)
Q Consensus 57 ~~~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~D----r~Gr-r~~l~~~~~~~~i~~-l~~~~~~------ 123 (447)
.++++..+ +.+|+++.++|.++.+.-+...+..|+.|.++| |+|| |+.++.+.+..+++. ++...++
T Consensus 26 ~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~ 105 (473)
T PRK10429 26 YMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQ 105 (473)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHH
Confidence 55555444 667999999999999999999999999999999 5699 555566777777764 3333221
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhHHHHhhh----cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc-ccccCcc
Q 013253 124 YKILMIGRILGGIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD-SFSLGPV 198 (447)
Q Consensus 124 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~----~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~-~~~~~~~ 198 (447)
+..+++...+.+++.........+ +..|. ++|.+..++.+. ...+|..+++.+...+.....+ ...-+|+
T Consensus 106 ~~~~~~~~~l~~~~~t~~~ip~~a-l~~~lt~~~~eR~~l~~~~~~----~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~ 180 (473)
T PRK10429 106 YVFVCVTYILWGMTYTIMDIPFWS-LVPTLTLDKREREQLVPYPRF----FASLAGFVTAGFTLPFVNYVGGGDRGFGFQ 180 (473)
T ss_pred HHHHHHHHHHHHHHHHHHcchHHh-hhHHhCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence 334555566667777666665544 55554 444443333222 1222222222222211111110 0011334
Q ss_pred chhhhHHHHHHHHHHHHHHhccccCCCCC--CchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhccccccc
Q 013253 199 APFDAAACFLAIGMVIILSSWTENYGDPS--ESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSP 276 (447)
Q Consensus 199 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (447)
....+.+++..+..+......+|++.+++ ++++...+.++..+.+++||+++.+.....+....... ...+.+.|.+
T Consensus 181 ~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~-~~~~~~y~~~ 259 (473)
T PRK10429 181 MFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNI-INGFAIYYFT 259 (473)
T ss_pred HHHHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HhhheeeEEE
Confidence 44444444444433344333455421111 11111123455566777888877766655555444332 3445555555
Q ss_pred ccCCCCc--hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhH
Q 013253 277 NDEEIPH--GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQ 354 (447)
Q Consensus 277 ~~~~~~~--~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (447)
...+.+. +.......++.+++.++.+++.||+|+|+. +..+..+..+............. + ..+..
T Consensus 260 y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~--~~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~ 327 (473)
T PRK10429 260 YVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRIL--WAGASIFPVLSCGVLLLMGLAAP------H----NALLI 327 (473)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH--HHHHHHHHHHHHHHHHHHhccCc------h----hHHHH
Confidence 4433322 445555567888999999999999998873 33333332222222211111100 0 01344
Q ss_pred HHHHHHHHhhhccchhHHHHHHhhcCChh
Q 013253 355 LLGFCTFEACVGIFWPSIMKMRSQYIPEE 383 (447)
Q Consensus 355 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~ 383 (447)
.+...+.+++.+..++..+++.+|..+.+
T Consensus 328 ~i~~~l~g~~~~~~~~~~~am~ad~id~~ 356 (473)
T PRK10429 328 VIAGILLNIGTALFWVLQVIMVADTVDYG 356 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 55667778888888888999999997743
No 106
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.77 E-value=1.2e-15 Score=145.72 Aligned_cols=324 Identities=15% Similarity=0.088 Sum_probs=181.2
Q ss_pred chhHhH-hHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhcc-CchhHHHHHHHHHHHHH-HHhcCc-hhHHHHHHHH
Q 013253 57 GPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLTYILSC-ITKHSP-QYKILMIGRI 132 (447)
Q Consensus 57 ~~~l~~-i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~-Grr~~l~~~~~~~~i~~-l~~~~~-~~~~l~~~r~ 132 (447)
..++|. +.+++|+++.+.+.+.........+..+++|+++||+ ||||++.++.++.+++. +.+..+ +...+.+...
T Consensus 29 ~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~ 108 (493)
T PRK15462 29 RALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLA 108 (493)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 344443 4467899999999887777777777778999999999 99999999999998875 444432 2233444444
Q ss_pred HHHhhhhhhhhhhhHHHHhhh-ccc-chhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHH
Q 013253 133 LGGIATSLLFSAFESWLVAEH-NKR-GFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI 210 (447)
Q Consensus 133 l~G~~~~~~~~~~~~~~i~~~-~~r-~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~ 210 (447)
+.+++.|...+...+ +++|. .++ .++.+ .++..+..++ +|..++|.+.+++.+.. +|+..|...++..++
T Consensus 109 li~iG~G~~~~~~~a-lv~elfp~~~~~R~s----gf~i~Y~~~n-lG~~iap~l~g~L~~~~--Gw~~~F~iaaigm~l 180 (493)
T PRK15462 109 IIVCGYGLFKSNVSC-LLGELYEPTDPRRDG----GFSLMYAAGN-VGSIIAPIACGYAQEEY--SWAMGFGLAAVGMIA 180 (493)
T ss_pred HHHHhcccccccHHH-HHHHHCCCCCccccc----eehHHHHHHH-HHHHHHHHHHHHHHhhh--ChHHHHHHHHHHHHH
Confidence 555666666665544 77776 221 22322 2333333333 67778888888877544 556777776544444
Q ss_pred HHHHHHHhc---cccCC-CCCCchhHHHH---------------------HHHHH---------------------HHH-
Q 013253 211 GMVIILSSW---TENYG-DPSESKDLLTQ---------------------FRGAA---------------------VAI- 243 (447)
Q Consensus 211 ~~~~~~~~~---~~~~~-~~~~~~~~~~~---------------------~~~~~---------------------~~~- 243 (447)
..+...... ++..+ ++++.++.... ..+.. ++.
T Consensus 181 ~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (493)
T PRK15462 181 GLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAEN 260 (493)
T ss_pred HHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 333332211 12111 11111100000 00000 000
Q ss_pred hcchhHHHHHHHHHhhh---hhhhhhhhhcccccccc-------cCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCc-c
Q 013253 244 ASDEKIALLGAIQSLFE---GSMYTFVFLWTPALSPN-------DEEIPHGFIFATFMLASMLGSSLASRLMARSPPR-V 312 (447)
Q Consensus 244 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~-~ 312 (447)
..+|+-....+...+.. ...|....+-+..|.++ +++.+++...+.+.+..++.+++.+++-.|..|| +
T Consensus 261 ~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~ 340 (493)
T PRK15462 261 QKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNR 340 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 00121111111111111 11121112222222222 1234557888888888777777777775555321 1
Q ss_pred --h--hHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccc
Q 013253 313 --E--SYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTI 388 (447)
Q Consensus 313 --~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~ 388 (447)
. .-...+..+.++++..........++ +...+.++.+....+++++.-+..|...+.+++..|++.|+..
T Consensus 341 ~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~------~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~ 414 (493)
T PRK15462 341 TVRIWGKFALGLGLMSAGFCILTLSARWSAM------YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVL 414 (493)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhcCC------CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHH
Confidence 1 12556666666666554433222111 1123345678888889999999999999999999999999999
Q ss_pred cchhhh
Q 013253 389 MNFFRI 394 (447)
Q Consensus 389 ~g~~~~ 394 (447)
+|....
T Consensus 415 mg~w~l 420 (493)
T PRK15462 415 TGIYML 420 (493)
T ss_pred HHHHHH
Confidence 998754
No 107
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.77 E-value=1.3e-22 Score=196.81 Aligned_cols=302 Identities=21% Similarity=0.223 Sum_probs=174.8
Q ss_pred chhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCc---hhHHHHHHHHHHHhhhhhhhhhhhHH
Q 013253 73 EIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSP---QYKILMIGRILGGIATSLLFSAFESW 148 (447)
Q Consensus 73 ~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~ 148 (447)
+.++..+..++...+++++.|.++||+|||+.+..+.++..++. +.++++ |++.+.++|+++|++.|...+....
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~- 125 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI- 125 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 45677777788788888899999999999999999999999986 668888 9999999999999999999888845
Q ss_pred HHhhhc---ccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc-ccCccchhhhHHHHHHHHHHHHHHhccccC-
Q 013253 149 LVAEHN---KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF-SLGPVAPFDAAACFLAIGMVIILSSWTENY- 223 (447)
Q Consensus 149 ~i~~~~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~- 223 (447)
++.|.. +|++.....+. +..+|..++..++....+.. .+.||..+....+..++..+.. ...||++
T Consensus 126 ~~~E~~~~~~R~~~~~~~~~--------~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~ 196 (451)
T PF00083_consen 126 YISEIAPPKHRGFLSSLFQL--------FWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR-FFLPESPR 196 (451)
T ss_pred cccccccccccccccccccc--------ccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 899983 34443332222 23344444444333322222 3567887777666665444333 3556642
Q ss_pred -----CCCCCchhHHHHH-----------------HH------HHHHHhcchh----HHHHHHHHHhhhhhhhhhhhhcc
Q 013253 224 -----GDPSESKDLLTQF-----------------RG------AAVAIASDEK----IALLGAIQSLFEGSMYTFVFLWT 271 (447)
Q Consensus 224 -----~~~~~~~~~~~~~-----------------~~------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 271 (447)
++.+++++..++. ++ .+++++++++ .........+.+...+.....|.
T Consensus 197 wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 276 (451)
T PF00083_consen 197 WLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYS 276 (451)
T ss_pred eecccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccc
Confidence 2222222221110 00 1223444432 22222222222233333345556
Q ss_pred cccccccCCCCch-HHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHH--HhhhccCCCCCCCCccc
Q 013253 272 PALSPNDEEIPHG-FIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPI--VTSFLVAPSNVKSGGIS 348 (447)
Q Consensus 272 ~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 348 (447)
|.+.++. +.+.. .......+...++.+++..+.||+|||+. +..+.....++..... ....... .....
T Consensus 277 ~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~--~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 348 (451)
T PF00083_consen 277 PSIFENA-GISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKL--LIIGLLLMAICSLILGIIFFLGVSS-----SSWWS 348 (451)
T ss_pred ccccccc-ccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-----ccccc
Confidence 6555442 33333 22233445667777888899999999973 4444444444433332 1111100 00000
Q ss_pred cchhhHHHHHHHHHhhhcc-chhHHHHHHhhcCChhhhccccchhhhh
Q 013253 349 FSGSLQLLGFCTFEACVGI-FWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 349 ~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
...+....+....++. ..+..+.+..|.+|++.|+++.|+....
T Consensus 349 ---~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~ 393 (451)
T PF00083_consen 349 ---ILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAV 393 (451)
T ss_pred ---cccceeeeecccccccccccccccccccccccccccccccccccc
Confidence 1222333333333332 3377778999999999999999987764
No 108
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.77 E-value=1.2e-16 Score=157.67 Aligned_cols=300 Identities=15% Similarity=0.064 Sum_probs=184.1
Q ss_pred hhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHhhhhhhhh
Q 013253 65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFS 143 (447)
Q Consensus 65 ~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~ 143 (447)
+.+..+........++.++...+++.++|+++||+|||++++.++++..++. ..++++|++.+++.|++.|++.+....
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence 4555555566566566666555666689999999999999999999999865 779999999999999999999999988
Q ss_pred hhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHHHHhcc
Q 013253 144 AFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWT 220 (447)
Q Consensus 144 ~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 220 (447)
.... ++.|. ++|+..... ......++.+++..++++.+ +||+.+++..+...+.++. ....|
T Consensus 191 ~~~~-~~~E~~~~~~R~~~~~~---------~~~~~~~~~~~~~~~a~~~~----~Wr~~~~~~~~~~~~~~~~-~~l~~ 255 (521)
T KOG0255|consen 191 VGFG-LVAEIVSPKQRGLALTL---------GGFFFVGGLMLPAGAAYITR----DWRWLFWIISIPSGLFLLL-WFLPP 255 (521)
T ss_pred HhHh-hheeecCcchhhHHHHH---------HHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHH-HHccC
Confidence 8755 88888 333333221 11233455566666666663 5666677766666554444 21222
Q ss_pred cc------CCCCCCchhHHHHHH--------------H----------------HHHHHhcchhHHHHHHHHHhhhhhhh
Q 013253 221 EN------YGDPSESKDLLTQFR--------------G----------------AAVAIASDEKIALLGAIQSLFEGSMY 264 (447)
Q Consensus 221 ~~------~~~~~~~~~~~~~~~--------------~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (447)
|. +++.+++.+..++.. . ...++++.++.....+...+.. ..+
T Consensus 256 Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~-~~~ 334 (521)
T KOG0255|consen 256 ESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIW-FVF 334 (521)
T ss_pred cChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHH-HHH
Confidence 42 222222222111110 0 0112333333222222222211 111
Q ss_pred hhhhhcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 013253 265 TFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS 344 (447)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (447)
. ..++.-.+.....+.+........+..........+...||.|||.. ......+..++............
T Consensus 335 ~-~~y~gl~~~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~--~~~~~~~~~~~~~~~~~~~~~~~------ 405 (521)
T KOG0255|consen 335 S-LVYYGLSLNVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPP--LFLSLFLAGIGLLLFGWLPDDLG------ 405 (521)
T ss_pred h-HHHHhhhhhhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHH--HHHHHHHHHHHHHHHHHhhccch------
Confidence 1 22333333444566666666666667788888888999999988873 55555555555555444433310
Q ss_pred CccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 345 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
. +...+...+..++.+..+...+.+..|.+|+..|..+.+..+..
T Consensus 406 -~-----~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~ 450 (521)
T KOG0255|consen 406 -G-----WLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAA 450 (521)
T ss_pred -h-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 0 13344455555666667777799999999999999998887764
No 109
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.76 E-value=5.5e-16 Score=149.89 Aligned_cols=320 Identities=14% Similarity=0.043 Sum_probs=185.4
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccC-----chhHHHHHHHHHH-HHH-HHhcCchhHHHH-
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQG-----RKRACVTYCLTYI-LSC-ITKHSPQYKILM- 128 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~G-----rr~~l~~~~~~~~-i~~-l~~~~~~~~~l~- 128 (447)
.+..|.+.+++|+|+++++...+...+...+ .+++|.++||++ ||+.++++.++.. +.. ..+..++.....
T Consensus 46 ~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~ 124 (468)
T TIGR00788 46 LPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAA 124 (468)
T ss_pred hhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 4455566678999999998777776664444 566999999998 7777777776663 333 234445544444
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHhhh--cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHH
Q 013253 129 IGRILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAAC 206 (447)
Q Consensus 129 ~~r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~ 206 (447)
+..++.+++.+...+...+ +..|. ++++.........+. . ..+|..+++.+++.+.+.. +|+..|++.+.
T Consensus 125 ~~~~l~~~~~a~~dv~~da-~~~e~~~~~~~~~~~~~s~~~~-~----~~~G~~vg~~l~G~l~~~~--~~~~~f~~~a~ 196 (468)
T TIGR00788 125 AFIFLAALAKALYDVLVDS-LYSERIRESPSAGPSLVSWMWG-A----SATGGLISSLLGGPLLDKT--LTRILFLITAA 196 (468)
T ss_pred HHHHHHHHHHHHHHHhHHH-HHhhhhhcCCCcCCCeeeHHHH-H----HHHHHHHHHHHHHHHHHhc--CcchHHHHHHH
Confidence 4789999999999888877 76666 223222222222222 1 2355566666666666443 56778888776
Q ss_pred HHHHHHHHHHHhccccCC--CCCCchh--------------HHHHHHHHHHHHhcchhHHHHHHHHHh-hhhhhhhhhhh
Q 013253 207 FLAIGMVIILSSWTENYG--DPSESKD--------------LLTQFRGAAVAIASDEKIALLGAIQSL-FEGSMYTFVFL 269 (447)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~--~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 269 (447)
+.++..+ .....+|+++ +++..++ ..++..+...+.+++|..+.......+ .... ......
T Consensus 197 l~ll~~~-~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~-~~~~~~ 274 (468)
T TIGR00788 197 LLLLQLF-VSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANL-PGASGS 274 (468)
T ss_pred HHHHHHH-HHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhc-CCCCce
Confidence 6665533 3335666531 1111010 011111233445667777664443333 2111 111111
Q ss_pred cccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCc
Q 013253 270 WTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGG 346 (447)
Q Consensus 270 ~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (447)
.-.+.++..+.++ |......+++.+++....+++.+|++.|+ .+..+..+..++...........+.. ..
T Consensus 275 -~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~--~l~~~~~l~~~~~~~~~~l~~~~~~~----~g 347 (468)
T TIGR00788 275 -VFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRL--LFGVTTLLYTLSSLFDLILVKRWNLA----FG 347 (468)
T ss_pred -eEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHH--HHHHHHHHHHHHHhCceeeeeccccc----cC
Confidence 1112234455555 77777888999999999999999998776 24444444433332211110000000 00
Q ss_pred cccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 347 ISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 347 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
....+.......+.+++.+..+.....++++..|++.+++.+++.+..
T Consensus 348 -i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~ 395 (468)
T TIGR00788 348 -ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASI 395 (468)
T ss_pred -CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHH
Confidence 000123445566777788888877899999999999999998887664
No 110
>PTZ00207 hypothetical protein; Provisional
Probab=99.76 E-value=2e-16 Score=153.58 Aligned_cols=124 Identities=11% Similarity=0.036 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHHHhhhhhc---chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHH
Q 013253 38 FKNNYLLVYSLMMAGDWLQ---GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL 114 (447)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~---~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i 114 (447)
.+|..+..........+.. +.+.+.+.+++|+|..|++++.+.+...+ .++++.|+++||+|||+++.++.+++.+
T Consensus 25 ~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g-~~~lp~G~L~Dr~G~R~vllig~ll~~i 103 (591)
T PTZ00207 25 RRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVG-YFLLPYSFIYDYLGPRPIFVLSMTVFCL 103 (591)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3444444444444333322 55567889999999999998887765543 4566789999999999999999999999
Q ss_pred HH-HHhcC------chhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh--cccchhhhHH
Q 013253 115 SC-ITKHS------PQYKILMIGRILGGIATSLLFSAFESWLVAEH--NKRGFEQQWL 163 (447)
Q Consensus 115 ~~-l~~~~------~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~ 163 (447)
+. +++++ ++++.+++.|++.|+|.+...+.+.. .+.++ ++|+...+..
T Consensus 104 G~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~-~i~~~Fp~~RG~a~Gi~ 160 (591)
T PTZ00207 104 GTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVV-TVLSVFPSNRGAVVAIM 160 (591)
T ss_pred HHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhChhhhHHHHHHH
Confidence 86 55665 68999999999999999888777655 56666 5555544433
No 111
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.75 E-value=2.4e-15 Score=140.09 Aligned_cols=307 Identities=16% Similarity=0.167 Sum_probs=197.5
Q ss_pred chhHhHhH-hhcCCCCcchhHHHHHHHHhhhhhccccchhhhc----cCchhH-HHHHHHHHHHHH-HHhcCc------h
Q 013253 57 GPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK----QGRKRA-CVTYCLTYILSC-ITKHSP------Q 123 (447)
Q Consensus 57 ~~~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr----~Grr~~-l~~~~~~~~i~~-l~~~~~------~ 123 (447)
..++...+ +..|+++..+|.++.+.-+.-++..|+.|.++|| +||||. ++.+.+..++.+ ++-.++ +
T Consensus 32 ~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k 111 (467)
T COG2211 32 VLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGK 111 (467)
T ss_pred HHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcc
Confidence 33343443 7789999999999999999999999999999995 787655 555667777754 544444 3
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhHHHHhhh----cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc-ccCcc
Q 013253 124 YKILMIGRILGGIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF-SLGPV 198 (447)
Q Consensus 124 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~----~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~-~~~~~ 198 (447)
....++.-.+.+++.......-.+ +.+|. ++|.+..++.+.. ..+|..+...+.+++...+.+.. .++|+
T Consensus 112 ~~ya~vtY~l~~l~YT~vniPy~a-l~~~iT~d~~ER~~l~s~R~~~----~~~g~~l~~~~~~plv~~~g~~~~~~g~~ 186 (467)
T COG2211 112 LIYALVTYMLLGLGYTLVNIPYGA-LGPEITQDPQERASLTSWRMVF----ASLGGLLVAVLFPPLVKLFGGGDKALGYQ 186 (467)
T ss_pred hHHHHHHHHHHHHHHHheeCchhh-cchhhcCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCCCcchhhHH
Confidence 445566778888888777665544 54444 5566655544443 33344444444444444443322 56666
Q ss_pred chhhhHHHHHHHHHHHHHHhccccCCCCCCchh-HHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccc
Q 013253 199 APFDAAACFLAIGMVIILSSWTENYGDPSESKD-LLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN 277 (447)
Q Consensus 199 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (447)
....+.+++..+..++.++..+|+..+.++.++ ..++.++.....++||++...+....+.... +.........|.+.
T Consensus 187 ~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~-~~i~~s~~~yy~~y 265 (467)
T COG2211 187 GTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIA-FNIRGSIMVYYVTY 265 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHHHHccchHHHHHHHHHHHHHH-HHHHhhhhheeEEE
Confidence 666666666666666666566665443332222 3344555666788999988887755544444 33346666667776
Q ss_pred cCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhH
Q 013253 278 DEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQ 354 (447)
Q Consensus 278 ~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (447)
..+.+. .........+.+++.++..++.+|+|+|+. ...+..+..+......+.... + .++.
T Consensus 266 ~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~--~~~~~~~~~i~~~~~~f~~~~---------~----~~l~ 330 (467)
T COG2211 266 VLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKL--FLIGLLLLAVGYLLLYFTPAG---------S----VVLI 330 (467)
T ss_pred EcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHH--HHHHHHHHHHHHHHHHhhcCc---------c----hHHH
Confidence 666555 344455556677779999999999999883 444544444444443333211 0 1356
Q ss_pred HHHHHHHHhhhccchhHHHHHHhhcCChhh
Q 013253 355 LLGFCTFEACVGIFWPSIMKMRSQYIPEEA 384 (447)
Q Consensus 355 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~ 384 (447)
++..++.+++.+...+..+++++|..+-++
T Consensus 331 ~~~~~i~~~g~~~~~~l~wam~~d~vDyge 360 (467)
T COG2211 331 VVALIIAGVGTGIANPLPWAMVADTVDYGE 360 (467)
T ss_pred HHHHHHHHHHhhccccccHHHhcchhhHHH
Confidence 666788889999999999999999976655
No 112
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.70 E-value=3.9e-15 Score=135.97 Aligned_cols=236 Identities=11% Similarity=0.044 Sum_probs=148.0
Q ss_pred hcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc--
Q 013253 119 KHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF-- 193 (447)
Q Consensus 119 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~-- 193 (447)
+...+|+.++++-++.|.|.+...+.+++ ++++. +++.++.+..+.. +++|..++|.+++.+....
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~-~v~~~~~~~~~~~~l~~~~~~--------~~~G~~~gP~i~~~~i~~~~~ 75 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANP-YVSILGPIETAASRLALTQAF--------NKLGTTVAPLFGGSLILSGAG 75 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHH-HHHHHCCcchHHHHHHHHHHH--------hhhHHHHHHHHHHHHHhcCCc
Confidence 34678999999999999999999999988 88766 3344555544443 4466666666666555211
Q ss_pred ------------ccCccchhhhHHHHHHHHH-HHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhh
Q 013253 194 ------------SLGPVAPFDAAACFLAIGM-VIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFE 260 (447)
Q Consensus 194 ------------~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (447)
.++|+.+|++.+.+..+.. ++.....||.+++++++.+..++ ...++.+++|+++...+..++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~f~yv 153 (310)
T TIGR01272 76 DLSMQVATANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVARVSSGDT--TQKTSAFQFTHLVLGALGIFVYV 153 (310)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccccccccccc--cchhhHHhhHHHHHHHHHHHHHH
Confidence 1467888886555544333 33333445543322221111111 11224566777776655555555
Q ss_pred hhhhhhhhhccccccccc--CCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhh
Q 013253 261 GSMYTFVFLWTPALSPND--EEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSF 335 (447)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 335 (447)
..... ...|.+.|+.+. ++.+. +...+....+.++|+++.+++.||+++|+. +..+..+..+...+.. ...
T Consensus 154 g~e~~-~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~--l~~~~~l~~~~~~l~~-~~~ 229 (310)
T TIGR01272 154 GAEVS-AGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRY--LAFNAFLAVLLSIGAA-LTH 229 (310)
T ss_pred HHHHH-HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHHHHHHHHHHHHH-HcC
Confidence 55554 588999999642 46554 667778888999999999999999997772 4343333333322211 111
Q ss_pred ccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhh
Q 013253 336 LVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA 384 (447)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~ 384 (447)
. ........+.|++.+..+|...+...+..|++.
T Consensus 230 ~---------------~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~ 263 (310)
T TIGR01272 230 G---------------YVAMWFVLALGLFNSIMFPTIFSLALNALGRHT 263 (310)
T ss_pred C---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 1 123446667889999999999999999888753
No 113
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.69 E-value=3.8e-14 Score=128.04 Aligned_cols=301 Identities=13% Similarity=0.117 Sum_probs=183.0
Q ss_pred hHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHH-HH-HHhcCch--h-HHHHHHHHHHHhhhhhhhhhhhHHH
Q 013253 75 GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SC-ITKHSPQ--Y-KILMIGRILGGIATSLLFSAFESWL 149 (447)
Q Consensus 75 g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i-~~-l~~~~~~--~-~~l~~~r~l~G~~~~~~~~~~~~~~ 149 (447)
|...+++.+...+.+|+.|.++|+.|+||..........+ +. ...++++ + +..++.-.+..++.......-.+ +
T Consensus 61 gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds-~ 139 (438)
T COG2270 61 GYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDS-M 139 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhh-H
Confidence 4555566666778889999999999998887777666655 33 4455443 4 44556667777777777666655 6
Q ss_pred HhhhcccchhhhHHHHHHHHHHHHHHHHHHHHh--hhhhh----hh------hcccccCccchhhhHHHHHHHHHHHHHH
Q 013253 150 VAEHNKRGFEQQWLSITFSKAIFLGNGLVAILS--GLFGN----LL------VDSFSLGPVAPFDAAACFLAIGMVIILS 217 (447)
Q Consensus 150 i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~--~~l~~----~l------~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 217 (447)
+.+..++......-+..+..++. |..+.-++. ....+ .. .+..+-.-|..+.+.++-.++..+....
T Consensus 140 L~~~~~k~~~~riS~lg~~~gyl-gs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~ 218 (438)
T COG2270 140 LPRLTTKDNMGRISGLGWALGYL-GSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMIL 218 (438)
T ss_pred hhhhcCccccCcccccccccccc-cchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHh
Confidence 66553332222111111221111 111111110 00110 00 0012223355555555544444444433
Q ss_pred hccccCCCC-CCc---hhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHH
Q 013253 218 SWTENYGDP-SES---KDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATF 290 (447)
Q Consensus 218 ~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 290 (447)
..++.+... +++ ++..+++.++.++.++++.+....+...+++-+..+ .......|..+.+|.+. .......
T Consensus 219 ~v~~~~~~~~~~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~t-il~~~~~fg~~~~gls~~~lll~g~~~ 297 (438)
T COG2270 219 NVHDAEKISSPPPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNT-ILAMGGVFGAADLGLSSTELLLIGIAL 297 (438)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHH-HHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 333332111 111 233456667788889999888888888888777666 46667777777788877 3344556
Q ss_pred HHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchh
Q 013253 291 MLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWP 370 (447)
Q Consensus 291 ~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 370 (447)
.+.+++|+++.|++.||+|.|+. +..+.++..+........... .-..+...+.|...|..+.
T Consensus 298 ~vvA~lg~ii~g~Ld~rfg~k~v--l~~~lvi~~~~~~~~~~~~~~---------------~~f~i~gll~g~s~G~~qA 360 (438)
T COG2270 298 SVVAALGAIIAGFLDERFGSKPV--LMIGLVILSIAALYLIFLEGE---------------LDFWILGLLVGTSLGGAQA 360 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCCcee--ehHHHHHHHHHHHHHHHcccc---------------HHHHHHHHHHHHhcchHHH
Confidence 68899999999999999999873 444444444443333322222 2445666888999999999
Q ss_pred HHHHHHhhcCChhhhccccchhhhh
Q 013253 371 SIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 371 ~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
..-++..+.+|+++-++.+|+++..
T Consensus 361 ~SRSy~~~lvp~~k~~~fFglyalt 385 (438)
T COG2270 361 SSRSYLARLVPKGKEGRFFGLYALT 385 (438)
T ss_pred HHHHHHHHhCCCccccceeehhhhh
Confidence 9999999999999999999999885
No 114
>PRK11462 putative transporter; Provisional
Probab=99.67 E-value=1.5e-13 Score=132.87 Aligned_cols=295 Identities=15% Similarity=0.152 Sum_probs=158.1
Q ss_pred HhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhc----cCchhHHH-HHHHHHHHHH-HHhcCch------hHHHHH
Q 013253 62 YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK----QGRKRACV-TYCLTYILSC-ITKHSPQ------YKILMI 129 (447)
Q Consensus 62 ~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr----~Grr~~l~-~~~~~~~i~~-l~~~~~~------~~~l~~ 129 (447)
...+..|+++..+|.++.+.-+.-.+..|+.|.++|| +||||..+ ++.+..+++. ++...++ ...+.+
T Consensus 35 fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~ 114 (460)
T PRK11462 35 FYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAI 114 (460)
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHH
Confidence 3447789999999999999999999999999999996 68876655 5656777765 3333332 334555
Q ss_pred HHHHHHhhhhhhhhhhhHHHHhhh----cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc-ccccCccchhhhH
Q 013253 130 GRILGGIATSLLFSAFESWLVAEH----NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD-SFSLGPVAPFDAA 204 (447)
Q Consensus 130 ~r~l~G~~~~~~~~~~~~~~i~~~----~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~-~~~~~~~~~f~~~ 204 (447)
.-.+..++.......-.+ +.+|. ++|.+..++.. .+..+|..+++.+..++.....+ ....+|+....+.
T Consensus 115 ~~~~~~~~~t~~~ipy~a-l~~~lt~d~~eRt~l~s~r~----~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~ 189 (460)
T PRK11462 115 TYTLLTLLYTVVNIPYCA-LGGVITNDPTQRISLQSWRF----VLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVL 189 (460)
T ss_pred HHHHHHHHHHHHhccHHH-HHHHhcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence 566667777666665544 55554 44444444332 23333444444443332222111 0112344444444
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhh--hhhhhhcccccccccCCCC
Q 013253 205 ACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSM--YTFVFLWTPALSPNDEEIP 282 (447)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 282 (447)
+++.+++........+|++++++++ .+.++..+..++||.++.+.....+..... ......|...|. .+.+
T Consensus 190 ~ii~~i~~~i~~~~~kE~~~~~~~~----~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~---~g~~ 262 (460)
T PRK11462 190 SVVAFMMLAFCFFTTKERVEAPPTT----TSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI---LGTP 262 (460)
T ss_pred HHHHHHHHHHHHhcceeccCCCccC----CCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh---cCCh
Confidence 4444444333333334432222111 123445667788887766544333222211 111222333332 2222
Q ss_pred c--hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHH
Q 013253 283 H--GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCT 360 (447)
Q Consensus 283 ~--~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 360 (447)
. +.......++.+++.++++++.||+++|+. .........+......+.... + .+...+..++
T Consensus 263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~--~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~l 327 (460)
T PRK11462 263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTI--FWWTNALLAVISLAMFFVPMQ---------A----SITMFVFIFV 327 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH--HHHHHHHHHHHHHHHHHhchh---------H----HHHHHHHHHH
Confidence 2 445556678888999999999999998762 222222222222221111111 0 0122334455
Q ss_pred HHhhhccchhHHHHHHhhcCChh
Q 013253 361 FEACVGIFWPSIMKMRSQYIPEE 383 (447)
Q Consensus 361 ~g~~~~~~~~~~~~~~~~~~p~~ 383 (447)
.+++.+...+..+++..|..+.+
T Consensus 328 ~g~~~~~~~~l~~~m~ad~~d~~ 350 (460)
T PRK11462 328 IGVLHQLVTPIQWVMMSDTVDYG 350 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhh
Confidence 66676666677788888876643
No 115
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.67 E-value=8.3e-14 Score=126.54 Aligned_cols=341 Identities=17% Similarity=0.177 Sum_probs=197.0
Q ss_pred hhhHHHHHHHHHHHhhhhhc----chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHH
Q 013253 37 SFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTY 112 (447)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~----~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~ 112 (447)
+.||.+++++.+....++++ +|.-....+.|| +....-|...+...++...+.++-|+.||+|-|...+++..+.
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln 119 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLN 119 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHH
Confidence 45777888888888888777 555544556677 5444556655566667777778889999999999999999999
Q ss_pred HHHHHH---hcC----chhH--HHHHHHHHHHhhhhhhhhhhhHHHHhhh--cccchhhhHHHHHHHHHHHHHHHHHHHH
Q 013253 113 ILSCIT---KHS----PQYK--ILMIGRILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAIL 181 (447)
Q Consensus 113 ~i~~l~---~~~----~~~~--~l~~~r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~ 181 (447)
.+|... +.. +.++ ....+..+.+.+.-...... + -+++. .++.+.. .......++.+|..+
T Consensus 120 ~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lP-s-kiA~~WF~~~qra~------A~~~~v~~n~LGvav 191 (480)
T KOG2563|consen 120 GIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLP-S-KIAAVWFPPDQRAI------ATVLGVMGNPLGVAV 191 (480)
T ss_pred HHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccc-c-HHHHhhCCcchhhh------hhhHHHhcchHHHHH
Confidence 997532 222 2344 55667777776666655443 2 33333 2222221 222333344455555
Q ss_pred hhhhhhhhhccc----ccCccc--hhhhHHHHHHHHHHHHHHhccccCCCCCCchhHHH---HHHHHHHHHhcchhHHHH
Q 013253 182 SGLFGNLLVDSF----SLGPVA--PFDAAACFLAIGMVIILSSWTENYGDPSESKDLLT---QFRGAAVAIASDEKIALL 252 (447)
Q Consensus 182 ~~~l~~~l~~~~----~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 252 (447)
+.++...+.++. +-.|.. .|+...++..+.+.+.....+++++.++......+ ...+..++.++++++...
T Consensus 192 g~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~~f~~si~~~~~n~~F~il 271 (480)
T KOG2563|consen 192 GFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQDASFPKSIKSCFKNRQFIIL 271 (480)
T ss_pred HhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhhcCcHHHHHHHHHcCccHHHH
Confidence 544444444322 223322 45544444444333333333332222222111111 245677889999999998
Q ss_pred HHHHHhhhhhhhhhhhhcccccccccCC-CCchHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHH
Q 013253 253 GAIQSLFEGSMYTFVFLWTPALSPNDEE-IPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPI 331 (447)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~ 331 (447)
.+++.+..+.++...+...+..-..+++ ...|.......+++++++.+.|.+.||.++-++ ...+......+......
T Consensus 272 ~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~-~~~v~~~~~~v~~~~l~ 350 (480)
T KOG2563|consen 272 AICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKL-TTLVLYLFALVGTLMLL 350 (480)
T ss_pred HHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHH-HHHHHHHHHHHHHHHHH
Confidence 8888877776665322222122223332 345888888889999999999999999854442 22222222222212211
Q ss_pred HhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhhhhH
Q 013253 332 VTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNI 398 (447)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~ 398 (447)
...... ...+.......++|++.....|+..-+..|..=|..-++..|+.++..+.
T Consensus 351 ~~t~~~-----------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~ 406 (480)
T KOG2563|consen 351 TCTLFL-----------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQI 406 (480)
T ss_pred HhhccC-----------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhH
Confidence 111110 01134556666777777778898888888875555556666666654433
No 116
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.64 E-value=2.2e-15 Score=127.79 Aligned_cols=304 Identities=14% Similarity=0.119 Sum_probs=170.3
Q ss_pred HhhcCCCCcchhHHHHHHHHhhhhhccccchhhhc-cCchhHHHHHHHHHHHH-H---HHhcCchhHHHHHHHHHHHhhh
Q 013253 64 YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILS-C---ITKHSPQYKILMIGRILGGIAT 138 (447)
Q Consensus 64 ~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr-~Grr~~l~~~~~~~~i~-~---l~~~~~~~~~l~~~r~l~G~~~ 138 (447)
..|.+++.++..++++.......+...++|++.|| +|.|..-++-+....++ . ..+..+.+|.+..+|++.|+|.
T Consensus 71 k~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGg 150 (459)
T KOG4686|consen 71 KLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGG 150 (459)
T ss_pred hcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCc
Confidence 36677788888888888777777777789999997 67776554444444444 2 2367899999999999999986
Q ss_pred hhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc-c-----CccchhhhHHH-HH
Q 013253 139 SLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS-L-----GPVAPFDAAAC-FL 208 (447)
Q Consensus 139 ~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~-~-----~~~~~f~~~~~-~~ 208 (447)
-....+... +..-+ ++-+...+.+.+..-. |..+-..+.|.+...+....+ - +-...+-...+ ..
T Consensus 151 ESlAVaQN~-yav~wFKGKELn~vfGlqlSvAR~----GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~s 225 (459)
T KOG4686|consen 151 ESLAVAQNK-YAVYWFKGKELNFVFGLQLSVARL----GSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQS 225 (459)
T ss_pred hhhhhhhcc-eeEEEecCccccchhhHHHHHHHh----hceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 666444434 54333 3334444433332221 222222222222221111110 0 00001111000 01
Q ss_pred HHHHHHHHHhccccCCCCCCchhHHHHHH------HHHHHH-hcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCC
Q 013253 209 AIGMVIILSSWTENYGDPSESKDLLTQFR------GAAVAI-ASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEI 281 (447)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (447)
+++... ..+.+++. +...++-. +...+. --.|++|.+.....++....+- .....|.++++.+|.
T Consensus 226 lical~--lg~~D~rA-----erilh~e~g~~Ge~pkLtdv~~f~ppfw~~~iicv~yyva~fP-Fi~lg~~fF~~rfGl 297 (459)
T KOG4686|consen 226 LICALS--LGLSDDRA-----ERILHLEEGFLGEEPKLTDVNTFYPPFWVLVIICVLYYVAWFP-FITLGPMFFQKRFGL 297 (459)
T ss_pred HHHHHH--hhhhhhHH-----HHHHhhhcCcccCCcccccccccCccHHHHHHHHHHHHHHHHH-HhhhhHHHHHHhhCC
Confidence 111110 11111110 00000000 000011 1136778776666666555554 356678888999998
Q ss_pred Cc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHH
Q 013253 282 PH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGF 358 (447)
Q Consensus 282 ~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (447)
++ +.+.+..-..+.+.+++.|.++||+|++.. +...+.......-..+ .+... .....+
T Consensus 298 S~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~-wv~~a~~~tl~~H~~l-~Ft~l----------------sPy~~m 359 (459)
T KOG4686|consen 298 SAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLW-WVASACILTLLGHSGL-FFTFL----------------SPYTSM 359 (459)
T ss_pred ChhhccchhhhhhhhhhhhhhhHHHhHhhhcceeh-hHHHHHHHHHHHhhhH-Hhhhc----------------cHHHHH
Confidence 87 556666666677888899999999998863 2222222222222222 12221 336788
Q ss_pred HHHHhhhccchhHHHHHHhhcCChhhhccccchhhhhhhH
Q 013253 359 CTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNI 398 (447)
Q Consensus 359 ~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~ 398 (447)
.+.|..+.......+..++..+|+++.|+++|..+...|.
T Consensus 360 ~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNL 399 (459)
T KOG4686|consen 360 TFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNL 399 (459)
T ss_pred HHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhh
Confidence 8889988887788999999999999999999998876444
No 117
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.63 E-value=1.6e-13 Score=126.93 Aligned_cols=330 Identities=18% Similarity=0.183 Sum_probs=200.1
Q ss_pred hhhhcchhHhHhHhhcC----CCCcchhHHHHHHHHhhhhhccccchhhhcc-CchhHHHHHHHHHHHHH-HHhcC--ch
Q 013253 52 GDWLQGPYVYYLYSTYG----FGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLTYILSC-ITKHS--PQ 123 (447)
Q Consensus 52 ~~~~~~~~l~~i~~~~g----~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~-Grr~~l~~~~~~~~i~~-l~~~~--~~ 123 (447)
..++..++..+++.+++ +|+++...+++.......+...++|+++||+ |+|+++..+.++..+|- +.+.. .+
T Consensus 37 yYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~ 116 (498)
T COG3104 37 YYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSG 116 (498)
T ss_pred hhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccc
Confidence 45666777777777776 9988888777776666667777899999995 99999999999999996 45555 47
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhHHHHhhh--cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchh
Q 013253 124 YKILMIGRILGGIATSLLFSAFESWLVAEH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPF 201 (447)
Q Consensus 124 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f 201 (447)
...+.++-.+.++|.|..-+...+ ++.|. +++.++.+ .++ ....+..+|..++|++.+++.++.+ |...|
T Consensus 117 ~~gl~i~L~~I~iG~Gl~K~NiS~-llg~ly~~~DprrD~----gFt-~fY~~iNiGsl~~p~i~~~~~~~~g--~~~gF 188 (498)
T COG3104 117 PGGLYIGLALIIVGTGLFKPNISS-LLGELYPKDDPRRDG----GFT-LFYMGINIGSLIAPIITGLLAINYG--WHVGF 188 (498)
T ss_pred ccHHHHHHHHHHhccccccccHHH-HHHHhcCCCCcccCC----Ccc-EEEEEeehHHHHHHHHHHHHHHhhC--HHHHH
Confidence 888999999999999999998866 88876 22222333 233 2223445777888888888776555 45677
Q ss_pred hhHHHHHHHHHHHHHHhcc---ccCCCCCCchhHHHHH---------------------HHHH----------------H
Q 013253 202 DAAACFLAIGMVIILSSWT---ENYGDPSESKDLLTQF---------------------RGAA----------------V 241 (447)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---------------------~~~~----------------~ 241 (447)
...++-....++..+...+ ....++++.....++. .+.. .
T Consensus 189 ~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~ 268 (498)
T COG3104 189 GLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFA 268 (498)
T ss_pred HHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666665555442111 1111111100000000 0000 0
Q ss_pred HHh------cchhHHHHHHHHHhhhhhh---hhh----hhhccccccccc---CCCCchHHHHHHHHHHHHHHHHHHHHh
Q 013253 242 AIA------SDEKIALLGAIQSLFEGSM---YTF----VFLWTPALSPND---EEIPHGFIFATFMLASMLGSSLASRLM 305 (447)
Q Consensus 242 ~~~------~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~g~l~ 305 (447)
+.. .+|+-....+...+....+ +.. ...|.....+++ ++.++++..+...+.-++..++..++.
T Consensus 269 ~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~ 348 (498)
T COG3104 269 EAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALW 348 (498)
T ss_pred HHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHH
Confidence 011 1222222211111111111 111 111222222222 335568888888888888887777777
Q ss_pred hcCCCcc---h--hHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcC
Q 013253 306 ARSPPRV---E--SYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYI 380 (447)
Q Consensus 306 dr~g~~~---~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 380 (447)
.|.++++ . .-...+..+++..+++.......... ++...+.++.+...++.+++.-+..|...+++.+..
T Consensus 349 ~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~-----~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~la 423 (498)
T COG3104 349 TKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGG-----PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLA 423 (498)
T ss_pred hHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhC
Confidence 7744331 1 12445555556665555444222111 122344568888999999999999999999999999
Q ss_pred Chhhhccccchhhh
Q 013253 381 PEEARSTIMNFFRI 394 (447)
Q Consensus 381 p~~~r~~~~g~~~~ 394 (447)
|++..+..++..-.
T Consensus 424 P~~~~s~~ma~wfL 437 (498)
T COG3104 424 PPALKSFIMAMWFL 437 (498)
T ss_pred hHHHHHHHHHHHHH
Confidence 99998888876544
No 118
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.56 E-value=2.4e-12 Score=120.46 Aligned_cols=183 Identities=19% Similarity=0.133 Sum_probs=118.8
Q ss_pred chhhHHHHHHHHHHHhhhhhc----chhHhHhHhh--cCCCCcchhHHHHHHHHhhhhhccccchhhhccCc-hhHHHHH
Q 013253 36 NSFKNNYLLVYSLMMAGDWLQ----GPYVYYLYST--YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR-KRACVTY 108 (447)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~----~~~l~~i~~~--~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Gr-r~~l~~~ 108 (447)
++.+|+.+.+..+..+...++ .|-.++..++ .+.+.+..|++.++..++..+.++..|++..|.++ |+.++.+
T Consensus 29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s 108 (488)
T KOG2325|consen 29 RKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVS 108 (488)
T ss_pred cCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHH
Confidence 344555554444444444443 4444444444 77788889999999888888999999999999996 8888889
Q ss_pred HHHHHHHHHH----hc-Cc-hhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHH
Q 013253 109 CLTYILSCIT----KH-SP-QYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVA 179 (447)
Q Consensus 109 ~~~~~i~~l~----~~-~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~ 179 (447)
.++..++.+. .. .+ .-+.++++|++.|+|.+..... .+ |+++. ++|.+..+. .+.+..+|..+|+
T Consensus 109 ~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~l-R~-Y~a~~s~~~dR~rA~a~----~~~~~vlg~ilGp 182 (488)
T KOG2325|consen 109 FLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVL-RA-YIADASTVEDRPRAFAA----TSGGFVLGIILGP 182 (488)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHH-HH-HHHhccCccchHHHHHH----hhhHHHHHHHHhH
Confidence 8888887422 22 33 5778999999999998887444 35 87775 555555443 3334455666666
Q ss_pred HHhhhhhhhhhccccc----C---ccchhhhHHHHHHHHHHHHHHhccccCC
Q 013253 180 ILSGLFGNLLVDSFSL----G---PVAPFDAAACFLAIGMVIILSSWTENYG 224 (447)
Q Consensus 180 ~~~~~l~~~l~~~~~~----~---~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 224 (447)
.+++.+++...+-..+ . +..+-++..++.++..++.....+|.+.
T Consensus 183 ~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 183 TIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 6666665543321111 1 1345566777777666666666666543
No 119
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.53 E-value=3.8e-11 Score=109.21 Aligned_cols=350 Identities=16% Similarity=0.124 Sum_probs=203.7
Q ss_pred HhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccC-----chhHHHHH-HHHHHHHH-HH-----hcCc-------
Q 013253 62 YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQG-----RKRACVTY-CLTYILSC-IT-----KHSP------- 122 (447)
Q Consensus 62 ~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~G-----rr~~l~~~-~~~~~i~~-l~-----~~~~------- 122 (447)
.+..|++++....+.+....+.. ....+.+|+.+|+.+ ||..+++. ..+...+. +. -++.
T Consensus 5 VMIvEL~vpA~lv~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~ 83 (403)
T PF03209_consen 5 VMIVELGVPAWLVALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG 83 (403)
T ss_pred hHHHHhccHHHHHHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 35578999988888888887773 345788999999999 88777665 33333332 21 1222
Q ss_pred hhH----HHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccc-Cc
Q 013253 123 QYK----ILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSL-GP 197 (447)
Q Consensus 123 ~~~----~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~-~~ 197 (447)
+.+ ...+.-.+.|+|.+...++..+ +++|..+++++.+.....+. ... +|.+++..+.+.+.+.++- +-
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lA-Ll~D~~~e~~R~~~v~ivw~-Mli----~G~iv~ai~~g~lL~~~s~~rL 157 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSFLA-LLADLAPEERRPRVVAIVWV-MLI----VGIIVSAIVFGRLLDPFSPERL 157 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHHHH-HHHhcCCHhhhhhhHHHHHH-HHH----HHHHHHHHHHHHHccccCHHHH
Confidence 222 3344557778888887777645 77777444444443333333 222 4444444555544432221 11
Q ss_pred cchhhhHHHHHHHHHHHHHHhccccCCC--CCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccc
Q 013253 198 VAPFDAAACFLAIGMVIILSSWTENYGD--PSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALS 275 (447)
Q Consensus 198 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (447)
...+.....+.+...++.. +-.|++.+ .+++++...+.++.+++++++|+...+.....+.....+. -...+-.|-
T Consensus 158 ~~v~~~~a~i~~~l~~ia~-wg~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~-QD~iLEPyg 235 (403)
T PF03209_consen 158 IQVIQGVALIALLLNLIAL-WGQEPRRSRRAAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFM-QDVILEPYG 235 (403)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhcccCCcccccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHh-hHHHcCCch
Confidence 1122222222222222222 12222211 1112233344556777888888877766555554444443 344556677
Q ss_pred cccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhc-CCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccch
Q 013253 276 PNDEEIPH---GFIFATFMLASMLGSSLASRLMAR-SPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSG 351 (447)
Q Consensus 276 ~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (447)
.+.++++. ..+....+.+..++-...+++..| .++++ ....++.....++.+........+ .
T Consensus 236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~--~a~~G~~~~~~~f~lii~a~~~~~------------~ 301 (403)
T PF03209_consen 236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKR--TAALGCLLGALAFALIILAGPLGS------------P 301 (403)
T ss_pred hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH--HHHHHHHHHHHHHHHHHHHHhccc------------c
Confidence 78888887 344456667888888888887774 55444 344555555555555443333311 2
Q ss_pred hhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh------hhHHHHHHHHhh--------cccchHHHHH
Q 013253 352 SLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNV--------DAFPITVMFG 417 (447)
Q Consensus 352 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~--------~~~~~~~~~~ 417 (447)
+.+....+++|++.|.......+.+.+..+++..|..+|..... .+.+.++.+.|. ....|..+|.
T Consensus 302 ~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~ 381 (403)
T PF03209_consen 302 WLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFA 381 (403)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHH
Confidence 47888899999999998888899999999888888887766553 333555554321 2235666777
Q ss_pred HHHHHHHHHHHHhhhhh
Q 013253 418 MCSIFLLVASVLQRRLM 434 (447)
Q Consensus 418 ~~~~~~~~~~~~~~~~~ 434 (447)
.=++..+++.++..+..
T Consensus 382 lEa~ll~~a~~ll~~l~ 398 (403)
T PF03209_consen 382 LEAVLLLAALVLLGRLD 398 (403)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 76666666666655543
No 120
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.45 E-value=6.4e-12 Score=120.22 Aligned_cols=164 Identities=13% Similarity=0.132 Sum_probs=111.9
Q ss_pred chhHhHhHhhcCCCC--------cchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhc-Cc---h
Q 013253 57 GPYVYYLYSTYGFGK--------GEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH-SP---Q 123 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~--------~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~-~~---~ 123 (447)
..+.+...++.|.++ ++.+...+...+...++..+.|+++||+|||+++..+.++.+++. +... .+ +
T Consensus 228 ~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~ 307 (418)
T TIGR00889 228 NIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFG 307 (418)
T ss_pred HHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhh
Confidence 344455556666543 455777777777677777889999999999999999999888764 3343 22 3
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc----cCccc
Q 013253 124 YKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS----LGPVA 199 (447)
Q Consensus 124 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~----~~~~~ 199 (447)
++.+++.+++.|++.+...+.... +++|..+++.+... .+........+|..++|.+++.+.+..+ ++|+.
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~-~i~~~~p~~~~g~~----~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~ 382 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSV-FVEKEVPVHIRASA----QGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQT 382 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHH
Confidence 466778899999999888777644 77877444433332 2222223445677777777777776644 57888
Q ss_pred hhhhHHHHHHHHHHHHHHhccccCCC
Q 013253 200 PFDAAACFLAIGMVIILSSWTENYGD 225 (447)
Q Consensus 200 ~f~~~~~~~~~~~~~~~~~~~~~~~~ 225 (447)
.|.+.+++.++..++..+..+|+++.
T Consensus 383 ~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 383 MWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 88887777777666666667766543
No 121
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=99.29 E-value=4.4e-09 Score=100.12 Aligned_cols=326 Identities=16% Similarity=0.114 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHhhhhhcc----hhHhHhHhhcCCCCcchh-HHHH----HHHHhhhhhccccchhhhccCchhHHHHHHH
Q 013253 40 NNYLLVYSLMMAGDWLQG----PYVYYLYSTYGFGKGEIG-QLFI----AGFGSSMLFGTIVGSLADKQGRKRACVTYCL 110 (447)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~----~~l~~i~~~~g~s~~~~g-~~~~----~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~ 110 (447)
+......++-.+..++.. +..+......+.+..... .... ...+...+.++..|.++||+|||..+.....
T Consensus 21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~ 100 (463)
T KOG2816|consen 21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLF 100 (463)
T ss_pred hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHH
Confidence 334555555555555553 333333333333322221 1111 1234466777889999999999999999999
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHhhhh--hhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 013253 111 TYILSCITKHSPQYKILMIGRILGGIATS--LLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNL 188 (447)
Q Consensus 111 ~~~i~~l~~~~~~~~~l~~~r~l~G~~~~--~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~ 188 (447)
...+...+.....+|.++ +.++..+ .......+ +++|..+...+...... .......+..++|.+++.
T Consensus 101 ~~~l~~~~~~~~~~~~~~----~~~l~g~~~~~~s~~~a-~vadis~~~~R~~~~gl-----l~~~~~~~~~~~p~~~~~ 170 (463)
T KOG2816|consen 101 GTILPALCLLFQGYWFFL----LLGLSGGFSAIFSVGFA-YVADISSEEERSSSIGL-----LSGTFGAGLVIGPALGGY 170 (463)
T ss_pred HHHHhHHHHHHHHHHHhh----hcccccchhhhhhhhhh-heeeccchhHHHHHHHH-----HHHHHHHHHhHHHHHHHH
Confidence 888875443333344443 4444322 22233334 67776332232221111 111234555666677776
Q ss_pred hhcccccCccchhhhHHHHHHHHHHHHHHhccccCCCCCCc---------hh-HHHHHHHH---HHHHhcchhHHHHHHH
Q 013253 189 LVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPSES---------KD-LLTQFRGA---AVAIASDEKIALLGAI 255 (447)
Q Consensus 189 l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~---~~~~~~~~~~~~~~~~ 255 (447)
+.+.. +.-..|.+..+..++.........||+..++++. .+ ......+. .....++|..+.+.+.
T Consensus 171 ~~~~~--~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~ 248 (463)
T KOG2816|consen 171 LVKFL--GIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLV 248 (463)
T ss_pred HHHhc--CchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHHHH
Confidence 66543 3346778877777777777776778765443332 00 00111111 1122233444444444
Q ss_pred HHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHH-HHhhcCCCcchhHHHHHHHHHHHHHHHHH
Q 013253 256 QSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLAS-RLMARSPPRVESYMQIVFVVSSVSLLLPI 331 (447)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g-~l~dr~g~~~~~~l~~~~~~~~~~~~~~~ 331 (447)
..+..........-..+.|++..++.+. +...+..+....+++.+.. .+...+|.|+ .+..+...-.+......
T Consensus 249 ~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~--~i~lGl~~~~~~~~~~a 326 (463)
T KOG2816|consen 249 AFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKR--LISLGLLSEFLQLLLFA 326 (463)
T ss_pred HHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--HhhHHHHHHHHHHHHHH
Confidence 4433333222112134666777777666 6566667777777776665 6666777666 34445444444444443
Q ss_pred HhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 332 VTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+.... +.+..............|...+..+...+++++|+++++.+..
T Consensus 327 f~~~~----------------w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i 374 (463)
T KOG2816|consen 327 FATET----------------WMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGI 374 (463)
T ss_pred Hhccc----------------hhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHH
Confidence 33333 2334444455566678899999999999999999999887764
No 122
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.28 E-value=3.9e-10 Score=106.93 Aligned_cols=159 Identities=11% Similarity=0.088 Sum_probs=116.1
Q ss_pred HHHHhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhH
Q 013253 47 SLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYK 125 (447)
Q Consensus 47 ~~~~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~ 125 (447)
++..........+.|...+|.|.++.++|.+.....+...+...+.+++.||+|+|+.+..+.+...+.. +.++++|.+
T Consensus 215 ~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 294 (382)
T TIGR00902 215 CLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFP 294 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHH
Confidence 3333344334556666668899999999988888777777777789999999999999999999999886 568899999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHH
Q 013253 126 ILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAA 205 (447)
Q Consensus 126 ~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~ 205 (447)
.++..+++.|+..+...+.... ++++. ++..+.. ..+.....+..+|..+++.+++++.++.+ + ..|...+
T Consensus 295 ~~~~~q~l~g~~~~~~~~~~~~-~i~~~-~~~~~~~----~q~~~~~~~~g~g~~~g~~~~G~l~~~~g--~-~~~~~~~ 365 (382)
T TIGR00902 295 LIFLLQILHCGTFAVCHLAAMR-YIAAQ-PGSEIAK----LQALYNALAMGGLIAIFTAFAGFIYPTLG--A-GTFVFMA 365 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhC-CHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--H-HHHHHHH
Confidence 9999999999999999998866 77765 3333222 12222234566788888888888887654 3 4466666
Q ss_pred HHHHHHHHH
Q 013253 206 CFLAIGMVI 214 (447)
Q Consensus 206 ~~~~~~~~~ 214 (447)
.+.++..++
T Consensus 366 ~~~~~~~~~ 374 (382)
T TIGR00902 366 IIAAAAFFL 374 (382)
T ss_pred HHHHHHHHH
Confidence 555554433
No 123
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.26 E-value=1.1e-10 Score=112.21 Aligned_cols=145 Identities=12% Similarity=0.054 Sum_probs=102.0
Q ss_pred hhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHhhhhhhhh
Q 013253 65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFS 143 (447)
Q Consensus 65 ~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~ 143 (447)
++.+.+..+.|.+.+...+...++.+++|+++||+|||+.+..+.++.+++. +.+++++.+.+...+++.|++.+...+
T Consensus 255 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~ 334 (420)
T PRK09528 255 ATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLV 334 (420)
T ss_pred hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 3346666778887777766666777799999999999999999888888875 567888999999999999998887766
Q ss_pred hhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHHH
Q 013253 144 AFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIIL 216 (447)
Q Consensus 144 ~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~ 216 (447)
.... ++.|..+++.+.. ..+.+.+.+..+|..+++.+.+++.+.. +|+..|...+.+.++...+..
T Consensus 335 ~~~~-~~~~~~~~~~~a~----~~~~~~~~~~~lg~~ig~~~~G~l~~~~--G~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 335 GVFK-YITLNFDVRLSAT----IYLVGFQFAKQLGAVFLSTLAGNLYDSI--GFQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred HHHH-HHHHHcCccceee----eeeehHHHHHHHHHHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHHHHHH
Confidence 6544 6666533222221 1111233345577788888888888654 467778776666655444444
No 124
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=99.25 E-value=4.1e-09 Score=100.87 Aligned_cols=325 Identities=16% Similarity=0.068 Sum_probs=163.5
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccC-----chhHHHHHHHHHHHHH-HHhc----CchhHH
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQG-----RKRACVTYCLTYILSC-ITKH----SPQYKI 126 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~G-----rr~~l~~~~~~~~i~~-l~~~----~~~~~~ 126 (447)
.+..|.+.+++|++++|.....+...+ --...|+.|.++|.+- ||+-++++.++..++. ..+. ..+...
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~l-Pw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~ 88 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASL-PWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI 88 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhC-chHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence 344567789999999999877666554 3345778999999863 5555666666665443 2222 345667
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHhhhccc-chhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHH
Q 013253 127 LMIGRILGGIATSLLFSAFESWLVAEHNKR-GFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAA 205 (447)
Q Consensus 127 l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r-~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~ 205 (447)
..+.-++..+|.+.....+.+ ++.|..+| ....+..++..... ..+|.+++..+++.+.+..+ ++..|.+.+
T Consensus 89 ~~~~l~la~~g~a~~DV~aDa-~vvE~~~~~p~~~g~lqS~~~~~----~~~G~lv~~~l~G~l~~~~~--~~~~f~i~~ 161 (433)
T PF03092_consen 89 AVVLLFLASFGYAFADVAADA-LVVELARREPESRGDLQSFVWGV----RSVGSLVGSLLSGPLLDSFG--PQGVFLISA 161 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhH-HHHHHhhcCCchhHHHHHHHHHH----HHHHHHHHHHhhhhhhhcCC--CeEEehHHH
Confidence 777778888999999888877 77777222 22122222222223 34555666666666665444 455576666
Q ss_pred HHHHHHHHHHHHhccccCCCC--------CC-chhH---HHHHHHHHHHHhcchhHHHHHH-HHHhhhhhhhhhhhhccc
Q 013253 206 CFLAIGMVIILSSWTENYGDP--------SE-SKDL---LTQFRGAAVAIASDEKIALLGA-IQSLFEGSMYTFVFLWTP 272 (447)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 272 (447)
.+..+..+......+|++.++ ++ .+.. .++.....++.++++..+...+ ...+....... .....-
T Consensus 162 ~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-~~a~~f 240 (433)
T PF03092_consen 162 ALPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSI-SSASSF 240 (433)
T ss_pred HHHHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCC-CCccEE
Confidence 555554444333333311111 00 0000 1222334455666677776555 22222221111 000000
Q ss_pred ccccccC---CCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCc
Q 013253 273 ALSPNDE---EIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGG 346 (447)
Q Consensus 273 ~~~~~~~---~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (447)
.+..+.. +.+. +....+..++.++|..+..+...+..-|+ +.....+......+.-.......+. .-+
T Consensus 241 y~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~---~~~~t~~~~~~~~l~~~~lv~~~n~---~~G 314 (433)
T PF03092_consen 241 YFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRR---IFVVTTLVSVLASLFDLLLVTRWNL---DLG 314 (433)
T ss_pred EEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHHHhcccEEEEEEEee---eeC
Confidence 1112222 3555 33333344555666666555544443333 3322222222211111111000000 000
Q ss_pred cccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhhhh
Q 013253 347 ISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLN 397 (447)
Q Consensus 347 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 397 (447)
.... +..+.--.+..+..+..+-....+++|..|+..-|+.+++.....|
T Consensus 315 i~d~-~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~N 364 (433)
T PF03092_consen 315 IPDQ-WFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSN 364 (433)
T ss_pred cCCe-EEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 0000 1223333444555555555567889999999999998877665533
No 125
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.23 E-value=8.1e-10 Score=105.16 Aligned_cols=148 Identities=12% Similarity=0.074 Sum_probs=97.2
Q ss_pred hhHhHh-HhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Q 013253 58 PYVYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (447)
Q Consensus 58 ~~l~~i-~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G 135 (447)
..+|.. .+++|.++.+.+.+.+.......+..++.|+++||+|||+.+..+.....+.. .....++.+.+++.+++.+
T Consensus 237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 316 (393)
T PRK15011 237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNA 316 (393)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 444544 46789999999887766666566667789999999999998877766555444 3345678888888899888
Q ss_pred hhhhhhhhhhhHHHHhhhc--ccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHH
Q 013253 136 IATSLLFSAFESWLVAEHN--KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV 213 (447)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~~--~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~ 213 (447)
++.+...+.... +..|.. +++...+. .+. ...+|..+++.+++.+.+. ++|+..|....++.++..+
T Consensus 317 ~~~g~~~~~~~~-~~~~~~p~~~g~~~~~----~~~----~~~lg~~~g~~l~G~i~~~--~g~~~~~~~~~~~~~~~~~ 385 (393)
T PRK15011 317 IYIGILGGIGML-YFQDLMPGQAGSATTL----YTN----TSRVGWIIAGSLAGIVAEI--WNYHAVFWFALVMIIATLF 385 (393)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCcchHHHH----HHH----HHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHH
Confidence 887776665533 566652 23332221 221 2345666666777776654 3566777776666666554
Q ss_pred HHH
Q 013253 214 IIL 216 (447)
Q Consensus 214 ~~~ 216 (447)
...
T Consensus 386 ~~~ 388 (393)
T PRK15011 386 CLL 388 (393)
T ss_pred HHH
Confidence 444
No 126
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.20 E-value=1.6e-09 Score=103.43 Aligned_cols=150 Identities=19% Similarity=0.200 Sum_probs=93.9
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G 135 (447)
.++++...++.|.+ +.+.......+...++.++.|++.||+||||.+..+..+.+++. +..+.++.+.+++.+++.|
T Consensus 236 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 313 (399)
T PRK05122 236 ATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTG 313 (399)
T ss_pred HHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34455555666663 33444344344444566789999999999999988888777775 5567788888888999999
Q ss_pred hhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHH
Q 013253 136 IATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII 215 (447)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~ 215 (447)
++.+...+.... ...|..+++.+... .+ .......+|..+++.+.+.+.+.. +|+..|...+.+.++..+..
T Consensus 314 ~~~~~~~~~~~~-~~~~~~~~~~~g~~----~g-~~~~~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~ 385 (399)
T PRK05122 314 FGFSLVFPALGV-EAVKRVPPQNRGAA----LG-AYSVFLDLSLGITGPLAGLVASWF--GYPSIFLAAALAALLGLALT 385 (399)
T ss_pred HhHHHHHHHHHH-HHHHhCCHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHc--CHHHHHHHHHHHHHHHHHHH
Confidence 999988777644 45554222222221 11 222233355555556666666544 45677777666666655444
Q ss_pred H
Q 013253 216 L 216 (447)
Q Consensus 216 ~ 216 (447)
.
T Consensus 386 ~ 386 (399)
T PRK05122 386 W 386 (399)
T ss_pred H
Confidence 4
No 127
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.19 E-value=2.7e-09 Score=101.16 Aligned_cols=149 Identities=12% Similarity=0.090 Sum_probs=105.0
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G 135 (447)
..++|...+|.|.++.+.|.+.+.......+...+.|++.||+|+|+.+..+.+..+++. +.++.++.+.+++..++.|
T Consensus 225 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 304 (382)
T PRK11128 225 YGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHC 304 (382)
T ss_pred HHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 344455557899999999988887777677777889999999999999999988888775 5577899999999999999
Q ss_pred hhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHH
Q 013253 136 IATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVI 214 (447)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~ 214 (447)
++.+...+.... ++.+.. +++... ..+........+|..+++.+++.+.+..++ ..+...+.+.++.+..
T Consensus 305 ~~~~~~~~~~~~-~~~~~~-~~~~~~----~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~---~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 305 GTFTVCHLAAMR-YIAARP-GSEVIR----LQALYSALAMGGSIAIMTVLSGFLYQHLGA---GVFWVMALVALPALFI 374 (382)
T ss_pred HHHHHHHHHHHH-HHHHCC-HhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHH
Confidence 999988777655 665542 222222 222222334556667778888888865543 3455555555444333
No 128
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.18 E-value=2e-09 Score=101.88 Aligned_cols=144 Identities=14% Similarity=0.133 Sum_probs=96.9
Q ss_pred hHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHhhhhhh
Q 013253 63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLL 141 (447)
Q Consensus 63 i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~ 141 (447)
+.+++|.++.+.+.+.........++.++.|++.||+|||+.+..+.+...+.. ...+.++.+.+...+++.|++.+..
T Consensus 226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 305 (375)
T TIGR00899 226 IIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGIL 305 (375)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347789999999887766655556667789999999999999888776655544 3355678888888899999998887
Q ss_pred hhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHH
Q 013253 142 FSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII 215 (447)
Q Consensus 142 ~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~ 215 (447)
.+.... ++.|..++.+ .. ..+. ......+|..+++.+++.+.+.. +|+..|...++..++..+..
T Consensus 306 ~~~~~~-~~~~~~~~~~-~~----~~~~-~~~~~~~g~~~g~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 306 AGIGML-YFQDLMPGRA-GA----ATTL-YTNTGRVGWIIAGSVGGILAERW--SYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred HHHHHH-HHHHhCcchh-hH----HHHH-HHHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHH
Confidence 776644 6666633222 11 1222 22223366677777777776544 45677777666665555443
No 129
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.17 E-value=3e-09 Score=101.18 Aligned_cols=161 Identities=14% Similarity=0.080 Sum_probs=100.7
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHh-cCchhHHHHHHHHHH
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK-HSPQYKILMIGRILG 134 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~-~~~~~~~l~~~r~l~ 134 (447)
...+|.+.+++|.+..+.|...+...+...++.+..|++.||+|||+.+..+..+..++. +.. +.++...+. -.+.
T Consensus 225 ~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~l~ 302 (393)
T PRK09705 225 IAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--AMVC 302 (393)
T ss_pred HHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--HHHH
Confidence 445667777789999999988777777777888899999999999999988877776664 333 333333222 3456
Q ss_pred HhhhhhhhhhhhHHHHhhh-cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHH
Q 013253 135 GIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV 213 (447)
Q Consensus 135 G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~ 213 (447)
|++.+...+.... ...+. .+++.+.. ..+.....+ .++..++|.+.+++.+..+ ++...|.+..+..++...
T Consensus 303 g~g~g~~~~~~~~-~~~~~~~~~~~~g~----~~g~~~~~~-~~~~~~gp~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~ 375 (393)
T PRK09705 303 GLGLGGAFPLCLL-LALDHSVQPAIAGK----LVAFMQGIG-FIIAGLAPWFSGVLRSISG-NYLMDWAFHALCVVGLMI 375 (393)
T ss_pred HHhccchHHHHHH-HHHhhcCCHHHHHH----HHHHHHHHH-HHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHH
Confidence 7777777776544 33333 22222222 222222222 3556677777777776554 355667766666665555
Q ss_pred HHHHhccccCCCC
Q 013253 214 IILSSWTENYGDP 226 (447)
Q Consensus 214 ~~~~~~~~~~~~~ 226 (447)
......||+++++
T Consensus 376 ~~~~~~~~~~~~~ 388 (393)
T PRK09705 376 ITLRFAPARFPQL 388 (393)
T ss_pred HHHHhccccccch
Confidence 5554556655433
No 130
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=99.17 E-value=6.1e-08 Score=89.57 Aligned_cols=311 Identities=15% Similarity=0.130 Sum_probs=176.5
Q ss_pred chhHhHh-Hh-hcCCCCcchh-HHH---HHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHH
Q 013253 57 GPYVYYL-YS-TYGFGKGEIG-QLF---IAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMI 129 (447)
Q Consensus 57 ~~~l~~i-~~-~~g~s~~~~g-~~~---~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~ 129 (447)
-|++.+. .+ +.|++..|+. -++ +-.++ ..-.+...+.|..+.|++++.+.+...+.. +.-+.++...+-+
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl---~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~ 99 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYL---AFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQL 99 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHH
Confidence 4554333 34 3899988886 222 22333 223378899999999999999998887775 6688899999999
Q ss_pred HHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHH
Q 013253 130 GRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA 209 (447)
Q Consensus 130 ~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~ 209 (447)
.-+.-|++.+....-. + ++-...++++.....+ ....... +|..++..+|..+....+...+....+......
T Consensus 100 ~q~~yg~~~a~evay~-s-Yiys~v~~~~yq~vts-~~raa~l----~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~ 172 (412)
T PF01770_consen 100 MQFFYGLATAAEVAYY-S-YIYSVVDKEHYQKVTS-YTRAATL----VGRFISSLLGQLLVSFGGVSYFQLNYISLASVS 172 (412)
T ss_pred HHHHHHHHHHHHHHHH-H-HheeecCHHHHHHHHH-HHHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999988874443 3 4433322222222111 1112333 344444444444443333444444444443333
Q ss_pred HHHHHHHHhccccCC-------------------CC-CC---ch---------------hHHHHHHHHHHHHhcchhHHH
Q 013253 210 IGMVIILSSWTENYG-------------------DP-SE---SK---------------DLLTQFRGAAVAIASDEKIAL 251 (447)
Q Consensus 210 ~~~~~~~~~~~~~~~-------------------~~-~~---~~---------------~~~~~~~~~~~~~~~~~~~~~ 251 (447)
+++++.. .+|..++ ++ ++ .. ...+.+.+..++..++|+++.
T Consensus 173 ~a~~~~~-fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~ 251 (412)
T PF01770_consen 173 LALLIAL-FLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLL 251 (412)
T ss_pred HHHHHHH-HcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHH
Confidence 3333322 2221100 00 00 00 001122234455667777777
Q ss_pred HHHHHHhhhhhhhhhhhhccccccccc---CCCC--chHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHH
Q 013253 252 LGAIQSLFEGSMYTFVFLWTPALSPND---EEIP--HGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVS 326 (447)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~ 326 (447)
..+-..+...+.+- +.+|....-++. .+.+ .|.+-+...+.+.++.+..|++-.++.+.....+.....+.+.+
T Consensus 252 WSlWWa~atcgy~q-v~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~ 330 (412)
T PF01770_consen 252 WSLWWAFATCGYYQ-VINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGL 330 (412)
T ss_pred HHHHHHHHHhHHHH-HHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHH
Confidence 66655555444333 344433332222 1111 17787888888888999999986666555443333333343444
Q ss_pred HHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhh
Q 013253 327 LLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRI 394 (447)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 394 (447)
+.+.....+ .|...++.++++..+....+....-++....++.-+...|++.+
T Consensus 331 L~lm~~t~~---------------Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf 383 (412)
T PF01770_consen 331 LFLMSFTGN---------------IWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTF 383 (412)
T ss_pred HHHHHHhhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHH
Confidence 333333222 26788888888888888888888888888888888888888554
No 131
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.16 E-value=3.2e-09 Score=101.98 Aligned_cols=156 Identities=18% Similarity=0.077 Sum_probs=101.6
Q ss_pred hhHhHhHhh-cCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Q 013253 58 PYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (447)
Q Consensus 58 ~~l~~i~~~-~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G 135 (447)
..+|...++ +|.++.+.|++.+...+...+++++.+++.||.++|+.+..+..+.+++. +..+.++.+...+..++.|
T Consensus 244 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 323 (417)
T PRK10489 244 VLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFG 323 (417)
T ss_pred HhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 345556565 89999999988777766677777889999999888888888877777765 5577888888888889999
Q ss_pred hhhhhhhhhhhHHHHhhhc---ccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHH
Q 013253 136 IATSLLFSAFESWLVAEHN---KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM 212 (447)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~ 212 (447)
++.+...+...+ ++.|.. .|++..+. ++. ...+|..+++.+.+.+.+.. +.+..+...+...++..
T Consensus 324 ~~~~~~~~~~~~-~~~~~~p~~~~g~~~g~----~~~----~~~~g~~~g~~l~G~l~~~~--g~~~~~~~~~~~~~~~~ 392 (417)
T PRK10489 324 YLSAISSLLQYT-LLQTQTPDEMLGRINGL----WTA----QNVTGDAIGAALLGGLGAMM--TPVASASASGFGLLIIG 392 (417)
T ss_pred HHHHHHHHHHHH-HHHhhCCHHHHHHHHHH----HHH----HHhhhHhHHHHHHHHHHHHh--chhhHHHHHHHHHHHHH
Confidence 988877665534 666652 34443332 222 23345555666666666433 44555665555544444
Q ss_pred HHHHHhccccCC
Q 013253 213 VIILSSWTENYG 224 (447)
Q Consensus 213 ~~~~~~~~~~~~ 224 (447)
.......++.++
T Consensus 393 ~~~~~~~~~~~~ 404 (417)
T PRK10489 393 VLLLLVLGELRR 404 (417)
T ss_pred HHHHHhcccccc
Confidence 444434455443
No 132
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.15 E-value=5.3e-09 Score=99.20 Aligned_cols=149 Identities=17% Similarity=0.162 Sum_probs=99.6
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHh
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGI 136 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~l~~~~~~~~~l~~~r~l~G~ 136 (447)
..++|...++.|.++.+.|...+...+...+++.+.|+++||+|+|+.+..+..+..++.+... + ........++.|+
T Consensus 220 ~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~l~g~ 297 (381)
T PRK03633 220 YGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-S-QAAMAPALFILGA 297 (381)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-h-hHHHHHHHHHHHH
Confidence 3456666778899988999887777777778888899999999999999888877777643222 2 2334456778888
Q ss_pred hhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHH
Q 013253 137 ATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII 215 (447)
Q Consensus 137 ~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~ 215 (447)
+.....|.... .+.|..++++..+. ......+..+|..++|.+++++.++.+ ++..|.+.+.+.++..+..
T Consensus 298 ~~~~~~p~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~lG~~igp~~~G~l~~~~g--~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 298 AGFTLYPVAMA-WACEKVEHHELVAM-----NQALLLSYTVGSLLGPSFTAMLMQNYS--DNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHhHHHHHHH-HHHccCCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHH
Confidence 77777777655 56665333332221 112233566778888888888887655 4566776666655444333
No 133
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.15 E-value=3.3e-09 Score=101.58 Aligned_cols=152 Identities=18% Similarity=0.145 Sum_probs=98.2
Q ss_pred chhHhHhHhhcCCCCcch----hHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHH
Q 013253 57 GPYVYYLYSTYGFGKGEI----GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGR 131 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~----g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r 131 (447)
.+.++...++.+.+..+. +.+.....+...+..+..|+++||+|||+.+..+..+..++. ...+.++.+.+.+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (408)
T PRK09874 239 APILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILR 318 (408)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 455555555543333332 333334444455667789999999999999998888777665 446677888888999
Q ss_pred HHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHH
Q 013253 132 ILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFL 208 (447)
Q Consensus 132 ~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~ 208 (447)
++.|++.+...+...+ .+.+. +++++..+.... ...+|..++|.+++.+.+. ++|+..|...+++.
T Consensus 319 ~~~g~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~--------~~~~g~~~gp~~~G~l~~~--~g~~~~f~~~~~~~ 387 (408)
T PRK09874 319 FLLGAADGALLPAVQT-LLVYNSSNQIAGRIFSYNQS--------FRDIGNVTGPLMGAAISAN--YGFRAVFLVTAGVV 387 (408)
T ss_pred HHHHhhhHhhHHHHHH-HHHHhCCcccceeeehHHHH--------HHHHHHHhhHHHHHHHHhh--cchhHHHHHHHHHH
Confidence 9999999988887655 54444 334444432222 2335566666777766654 45667788877777
Q ss_pred HHHHHHHHHhc
Q 013253 209 AIGMVIILSSW 219 (447)
Q Consensus 209 ~~~~~~~~~~~ 219 (447)
++..+......
T Consensus 388 l~~~~~~~~~~ 398 (408)
T PRK09874 388 LFNAVYSWNSL 398 (408)
T ss_pred HHHHHHHHHHH
Confidence 76655554333
No 134
>PRK03545 putative arabinose transporter; Provisional
Probab=99.13 E-value=6.9e-09 Score=98.75 Aligned_cols=142 Identities=14% Similarity=0.062 Sum_probs=92.3
Q ss_pred hHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH--HHhcCchhHHHHHHHHHHHhhhhh
Q 013253 63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC--ITKHSPQYKILMIGRILGGIATSL 140 (447)
Q Consensus 63 i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~--l~~~~~~~~~l~~~r~l~G~~~~~ 140 (447)
+.+++|.|..+.+.+.+...+.+.+++++.|++.||+|||+.. .+..+..++. +....++.+.+.+..++.|++.+.
T Consensus 232 l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~ 310 (390)
T PRK03545 232 VQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMC 310 (390)
T ss_pred HHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhc
Confidence 3455799998998887776677778888999999999988754 4444444432 335577888888889999998776
Q ss_pred hhhhhhHHHHhhhcc--cchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHHH
Q 013253 141 LFSAFESWLVAEHNK--RGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIIL 216 (447)
Q Consensus 141 ~~~~~~~~~i~~~~~--r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~ 216 (447)
..+.... .+.|..+ +++..+ ..+.. ..+|..+++.+++.+.+. ++++..|...+.+.+++.....
T Consensus 311 ~~~~~~~-~~~~~~~~~~~~~~g----~~~~~----~~~g~~~G~~~~G~~~~~--~g~~~~~~~~~~~~~~~~~~~~ 377 (390)
T PRK03545 311 IGLAMQV-KVLKLAPDATDVAMA----LFSGI----FNIGIGAGALLGNQVSLH--LGLSSIGYVGAALALAALVWSI 377 (390)
T ss_pred chHHHHH-HHHHhCCCcHHHHHH----HHHHH----HHHHHHHHHHHHHHHHhc--cChhHHHHHHHHHHHHHHHHHH
Confidence 6665544 5555422 222222 22222 334555566777776654 4556778877777766655554
No 135
>PRK03699 putative transporter; Provisional
Probab=99.13 E-value=3.3e-09 Score=101.02 Aligned_cols=147 Identities=13% Similarity=0.082 Sum_probs=99.2
Q ss_pred chhHhHhH-hhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHH
Q 013253 57 GPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILG 134 (447)
Q Consensus 57 ~~~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~ 134 (447)
...+|.+. +++|.|+.+.+.+.+.......++.++.|+++||++||+.+.....+..+.. +....++.+.+.+..++.
T Consensus 225 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (394)
T PRK03699 225 ISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGL 304 (394)
T ss_pred HHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 34556555 6789999999988777777777888899999999999999888776666654 445677777777778889
Q ss_pred HhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHH
Q 013253 135 GIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM 212 (447)
Q Consensus 135 G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~ 212 (447)
|++.+...+...+ +..|..++.. .. ..+. ......+|..++|.+.+.+.+..+ ++..++...++..++.
T Consensus 305 G~~~~~~~~~~~~-~~~~~~~~~~-~~----~~g~-~~~~~~~g~~i~p~~~G~l~~~~g--~~~~~~~~~~~~~~~~ 373 (394)
T PRK03699 305 GFFSSAIYTTIIT-LGSQQTKVAS-PK----LVNF-ILTCGTIGTMLTFVVTSPIVAHFG--LQAALLTANGLYAVVF 373 (394)
T ss_pred HHHHHHHHHHHHH-HHHHHccCCC-HH----HHHH-HHHhhhHHHHHHHHHHHHHHHHhC--chhhhhhhHHHHHHHH
Confidence 9888877776544 5555422211 11 1121 222344778888888888876554 4566666555555443
No 136
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.09 E-value=3.3e-09 Score=100.27 Aligned_cols=143 Identities=15% Similarity=0.117 Sum_probs=95.8
Q ss_pred hhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchh--HHHHHHHHHH
Q 013253 58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQY--KILMIGRILG 134 (447)
Q Consensus 58 ~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~--~~l~~~r~l~ 134 (447)
...++..+++|.++.+.+...+...+...++.++.|+++||+|||+.+..+..+.+++. +..+.++. ..+....++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (377)
T TIGR00890 226 GLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV 305 (377)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Confidence 33445567889888888877777777777888899999999999999999888887765 44555432 3345567788
Q ss_pred HhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHH
Q 013253 135 GIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIG 211 (447)
Q Consensus 135 G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~ 211 (447)
|++.+...+.... ++.|. ++|++..+. ......+|..++|.+.+.+.+.. +|+..|...+++.+++
T Consensus 306 g~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~--------~~~~~~~g~~~~~~~~g~l~~~~--g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 306 FFTWGGTISLFPS-LVSDIFGPANSAANYGF--------LYTAKAVAGIFGGLIASHALTEI--GFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHhccchhccHH-HHHHHhhhhhhhhHhHH--------HHHHHHHHHHHHHHHHHHHHhhh--chhhHHHHHHHHHHHh
Confidence 8887777665534 66665 334443332 22234466777777777776544 4566677666555543
No 137
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.09 E-value=8.3e-09 Score=98.81 Aligned_cols=148 Identities=15% Similarity=0.131 Sum_probs=99.0
Q ss_pred hhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHh
Q 013253 58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGI 136 (447)
Q Consensus 58 ~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~ 136 (447)
..+|.+.++.|.++.+.+.......+...+++++.|++.||+|||+.+..+.....++. +..+.++.+.+.+..++.|+
T Consensus 241 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 320 (406)
T PRK11551 241 NWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGL 320 (406)
T ss_pred HHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34567778889999999988887777777888899999999999999888766666654 44667777777778888888
Q ss_pred hhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHH
Q 013253 137 ATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV 213 (447)
Q Consensus 137 ~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~ 213 (447)
+.+...+...+ +..|. ++|++..+.. .....+|..++|.+.+.+.+..+ ++...+.......++..+
T Consensus 321 ~~~~~~~~~~~-~~~~~~p~~~~g~~~g~~--------~~~~~~g~~~g~~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~ 390 (406)
T PRK11551 321 FVVGGQSVLYA-LAPLFYPTQVRGTGVGAA--------VAVGRLGSMAGPLLAGQLLALGR-STVGVIGASIPVILVAAL 390 (406)
T ss_pred HHHhHHHHHHH-HHHHHcchhhhhhhhhHH--------HHhhhHHHHHHhhhHhhhhccCC-chHHHHHHHHHHHHHHHH
Confidence 87777666544 66665 3344433322 22234666777777777765432 344445444444444433
Q ss_pred HH
Q 013253 214 II 215 (447)
Q Consensus 214 ~~ 215 (447)
..
T Consensus 391 ~~ 392 (406)
T PRK11551 391 AA 392 (406)
T ss_pred HH
Confidence 33
No 138
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.06 E-value=9.2e-10 Score=88.05 Aligned_cols=126 Identities=23% Similarity=0.362 Sum_probs=87.2
Q ss_pred hhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcc---cchh
Q 013253 84 SSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNK---RGFE 159 (447)
Q Consensus 84 ~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~---r~~~ 159 (447)
...+.+++.|++.||+|||+.+..+.....++. .....++++.+.+.+++.|++.+...+.... ++.|..+ |++.
T Consensus 10 ~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~ 88 (141)
T TIGR00880 10 GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAA-LIADIYPPEERGVA 88 (141)
T ss_pred HHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHCChhhhhHH
Confidence 344667789999999999999999988888775 5577889999999999999999988887755 7777632 3333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHHHHhcc
Q 013253 160 QQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWT 220 (447)
Q Consensus 160 ~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 220 (447)
.+. ......+|..+++.+.+.+.+.. +|+..+........+..+......|
T Consensus 89 ~~~--------~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 89 LGL--------MSAGIALGPLLGPPLGGVLAQFL--GWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred HHH--------HHHhHHHHHHHhHHhHHHHhccc--chHHHHHHHHHHHHHHHHHHhhcCC
Confidence 322 22334466666666666666544 4556677666665555544443333
No 139
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.06 E-value=1.4e-08 Score=99.68 Aligned_cols=160 Identities=14% Similarity=0.160 Sum_probs=93.2
Q ss_pred chhHhHhH-hhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHH-HH--H-HhcCchhHHHHHHH
Q 013253 57 GPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SC--I-TKHSPQYKILMIGR 131 (447)
Q Consensus 57 ~~~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i-~~--l-~~~~~~~~~l~~~r 131 (447)
..++|.+. +++|.+..+.+.......+...++.+..|+++||+|||+.+..+.+...+ +. . ...+++...+++++
T Consensus 270 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (490)
T PRK10642 270 LTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGL 349 (490)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 44566655 56788877766665555555666677899999999999998888765443 22 1 22355677888889
Q ss_pred HHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHH
Q 013253 132 ILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIG 211 (447)
Q Consensus 132 ~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~ 211 (447)
++.|++.+........ ++.|.-+...+... .+....++. ++..++|.+.+++.+..+ +|+.+++...+..++.
T Consensus 350 ~~~g~~~~~~~g~~~~-~~~~~~p~~~Rg~~----~g~~~~~~~-~~g~~~p~i~g~l~~~~~-~~~~~~~~~~~~~~i~ 422 (490)
T PRK10642 350 LMLAVILNCFTGVMAS-TLPAMFPTHIRYSA----LAAAFNISV-LVAGLTPTLAAWLVESTQ-NLMMPAYYLMVVAVIG 422 (490)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHCCCccchHH----HHHHHHHHH-HHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHH
Confidence 9998877665554433 66666333333321 222233333 223455666666554332 3455555444444444
Q ss_pred HHHHHHhccccCC
Q 013253 212 MVIILSSWTENYG 224 (447)
Q Consensus 212 ~~~~~~~~~~~~~ 224 (447)
.+... ..||+++
T Consensus 423 ~~~~~-~~pes~~ 434 (490)
T PRK10642 423 LITGV-TMKETAN 434 (490)
T ss_pred HHHHH-HhccccC
Confidence 33333 4577654
No 140
>PRK10054 putative transporter; Provisional
Probab=99.05 E-value=4.9e-09 Score=99.78 Aligned_cols=130 Identities=9% Similarity=0.066 Sum_probs=86.3
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHH
Q 013253 248 KIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSS 324 (447)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~ 324 (447)
.++.+.....+...+ +.....+.|.++++.++.+. |...+...+...++++..|+++||+|||+. +..+.....
T Consensus 8 ~~~~l~~~~~~~~~g-~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~--~~~~~~~~~ 84 (395)
T PRK10054 8 STSALLASSLLLTIG-RGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRY--MLLAITAFA 84 (395)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchh--HHHHHHHHH
Confidence 344444444444444 33356778888877777766 677777778899999999999999999873 444444444
Q ss_pred HHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 325 VSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+......+..+. +..++...+.+.+.+...+...++..|..|+++|+++.|+.+..
T Consensus 85 ~~~~~~~~~~~~---------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 140 (395)
T PRK10054 85 SGFIAIPLVNNV---------------TLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTM 140 (395)
T ss_pred HHHHHHHHHhHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Confidence 443333222221 23344455556666666788899999999999999998877654
No 141
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.04 E-value=6e-09 Score=101.37 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=101.8
Q ss_pred hcchhHHHHHHHHHhhhhhhhhhhhhccccccccc--CCCCc---hHHHHHHHHHHHHHHHHHHHHhhc-CCCcchhHHH
Q 013253 244 ASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPND--EEIPH---GFIFATFMLASMLGSSLASRLMAR-SPPRVESYMQ 317 (447)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~~~l~ 317 (447)
+++|+.........+.....++....++|.|+++. +|.+. +...+...++..++.+++|+++|| +|||+. +.
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~--l~ 83 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKT--MV 83 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHH--HH
Confidence 34555444444444444333444677888888654 66655 777788888999999999999999 899984 55
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhh---hccccchhhh
Q 013253 318 IVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA---RSTIMNFFRI 394 (447)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~---r~~~~g~~~~ 394 (447)
.+..+..+...+....... +...+...+.+++.+...|...+++.|.+|+++ |+++.++.+.
T Consensus 84 ~~~~~~~~g~~~~~~~~~~---------------~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~ 148 (475)
T TIGR00924 84 LGGIVLMLGHFMLAMSIYP---------------DLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYM 148 (475)
T ss_pred HHHHHHHHHHHHHHhcccH---------------hHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHH
Confidence 5555555544443322111 245566777888888888999999999998764 7788877665
Q ss_pred hh------hHHHHHHHHhhcccchHHHHHHHHH
Q 013253 395 PL------NIFVCVVLYNVDAFPITVMFGMCSI 421 (447)
Q Consensus 395 ~~------~~~~~~~l~~~~~~~~~~~~~~~~~ 421 (447)
.. ++.+++.+.+. .++...+..+++
T Consensus 149 ~~niG~~ig~~l~g~l~~~--~g~~~~f~~~~~ 179 (475)
T TIGR00924 149 SINIGSFISPLLAGVIAEN--YGYHVGFNLAAV 179 (475)
T ss_pred HHHHHHHHHHHHHHHHHHh--cChHHHHHHHHH
Confidence 42 23344444443 244444444443
No 142
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.03 E-value=7.9e-09 Score=101.29 Aligned_cols=267 Identities=15% Similarity=0.157 Sum_probs=160.9
Q ss_pred HHHHHHHHHhhhhhc----chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-
Q 013253 42 YLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC- 116 (447)
Q Consensus 42 ~~~~~~~~~~~~~~~----~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~- 116 (447)
++.+..+..+...+. ...+..+-+.|+++.++.|.+.+..=+...+...+..+..-|.-|-|.+-++.++.+++.
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl 177 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL 177 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence 444444444444444 333445568899999999877666555555555678889999999999999999998875
Q ss_pred HHhcC--------------------c-----------------------------h--hH-HHHHHHHHHHhhhhhhhhh
Q 013253 117 ITKHS--------------------P-----------------------------Q--YK-ILMIGRILGGIATSLLFSA 144 (447)
Q Consensus 117 l~~~~--------------------~-----------------------------~--~~-~l~~~r~l~G~~~~~~~~~ 144 (447)
+.++- + + ++ .++++.++.|+|....++.
T Consensus 178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl 257 (735)
T KOG3626|consen 178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL 257 (735)
T ss_pred HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence 43321 0 0 12 5678889999999999999
Q ss_pred hhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc---------cccCcc----chhhhHHHHHHHH
Q 013253 145 FESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS---------FSLGPV----APFDAAACFLAIG 211 (447)
Q Consensus 145 ~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~---------~~~~~~----~~f~~~~~~~~~~ 211 (447)
..+ |+-|..+++...-..+..+. ...+|-.+|.+++.+...+-.+. .+-+|. .-|++.+.+.++.
T Consensus 258 Gis-YiDDnvk~~~SplYlgi~~~-~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~ 335 (735)
T KOG3626|consen 258 GIS-YIDDNVKKKNSPLYLGILYS-MAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFS 335 (735)
T ss_pred CCc-cccccccccCCcHHHHHHHH-HHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 877 99998555544443333332 33333333333333333222221 112443 3444455555544
Q ss_pred HHHHHHhccccCCCCC-------------------Cchh---HHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhh
Q 013253 212 MVIILSSWTENYGDPS-------------------ESKD---LLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFL 269 (447)
Q Consensus 212 ~~~~~~~~~~~~~~~~-------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (447)
.+.+. ..|++.++.+ +..+ ..+++.+..+++++||-++...+...+-.....+ ..+
T Consensus 336 a~p~f-~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G-~~t 413 (735)
T KOG3626|consen 336 AVPLF-FFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITG-YIT 413 (735)
T ss_pred HHHHH-hCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-HHH
Confidence 44443 3343222110 0011 1233445667888888888777666655555444 688
Q ss_pred cccccccccCCCCchHHH---HHHH-HHHHHHHHHHHHHhhcCCCcc
Q 013253 270 WTPALSPNDEEIPHGFIF---ATFM-LASMLGSSLASRLMARSPPRV 312 (447)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~---~~~~-i~~~~~~~~~g~l~dr~g~~~ 312 (447)
|+|.|++.+++.+++..- ...+ -+..+|.+++|++.+|+..+.
T Consensus 414 FlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~ 460 (735)
T KOG3626|consen 414 FLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSA 460 (735)
T ss_pred hhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccH
Confidence 999999999999884333 2333 346778899999999985443
No 143
>PRK12382 putative transporter; Provisional
Probab=99.02 E-value=2.7e-08 Score=94.80 Aligned_cols=150 Identities=19% Similarity=0.276 Sum_probs=95.9
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G 135 (447)
..+.+...++.+.+. .+...........++.++.|++.||+||||.+..+..+.+++. +..+.++.+.+.+..++.|
T Consensus 236 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 313 (392)
T PRK12382 236 GTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTG 313 (392)
T ss_pred HHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 444455556666653 3433333334445667789999999999999999888887775 5567788888888999999
Q ss_pred hhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHH
Q 013253 136 IATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII 215 (447)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~ 215 (447)
++.+...+.... .+.|..+++++... .+ .......+|..+++.+.+.+.+..+ |+..|...+.+.++.....
T Consensus 314 ~~~~~~~~~~~~-~~~~~~~~~~~g~~----~g-~~~~~~~~g~~ig~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 314 AGCSLIFPALGV-EVVKRVPSQVRGTA----LG-GYAAFQDIAYGVSGPLAGMLATSFG--YPSVFLAGAISAVLGIIVT 385 (392)
T ss_pred HHHHhHHHHHHH-HHHHhcCHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHhC--chHHHHHHHHHHHHHHHHH
Confidence 998887776544 55554222222221 11 1222344566667777777776554 5566777666665555444
Q ss_pred H
Q 013253 216 L 216 (447)
Q Consensus 216 ~ 216 (447)
.
T Consensus 386 ~ 386 (392)
T PRK12382 386 I 386 (392)
T ss_pred H
Confidence 3
No 144
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.01 E-value=5.4e-08 Score=89.52 Aligned_cols=203 Identities=21% Similarity=0.212 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHHHHHHHhhcc-cCccCCCCCc---c---cchhh-HHHHHHHHHHHhhhhhcchhH-hHhHhhcCCCCcc
Q 013253 3 MFFYLVFGALGAVVAALELSK-TNKDRINTSS---A---FNSFK-NNYLLVYSLMMAGDWLQGPYV-YYLYSTYGFGKGE 73 (447)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~---~~~~~-~~~~~~~~~~~~~~~~~~~~l-~~i~~~~g~s~~~ 73 (447)
.|+....+++++++......+ ++.++..+.+ . .++.+ +..+..+.+.+.+.+....++ |.+.+..|.|.++
T Consensus 169 ~F~~ia~l~ll~~~~~~~~lP~~~~~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~ 248 (394)
T COG2814 169 TFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSA 248 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccCCCCCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhH
Confidence 355666667777776666666 2222222111 1 11111 224444444444555444444 3445678899999
Q ss_pred hhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH--HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHh
Q 013253 74 IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC--ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVA 151 (447)
Q Consensus 74 ~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~--l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~ 151 (447)
++++....-+.+.+++.+.|+++|| +.|+.+.....+.++.. +....++.+..++.-++.|+........... -++
T Consensus 249 vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~-~~a 326 (394)
T COG2814 249 VSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQT-RLA 326 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHH-Hhc
Confidence 9988777666677888899999999 99999998888887764 3455666777777777777766655444322 234
Q ss_pred hh--cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHHHH
Q 013253 152 EH--NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILS 217 (447)
Q Consensus 152 ~~--~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 217 (447)
+. +.++...+.+.. ..+ +|..+|..+++...++ +++....+..+.+.+++..+...
T Consensus 327 ~~~p~~~~~a~sl~~a----a~n----lgia~GA~lGG~v~~~--~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 327 RLAPDAADLAGSLNVA----AFN----LGIALGAALGGLVLDA--LGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred ccCCCchHHHHHHHHH----HHH----HHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHHHHH
Confidence 32 334444443333 333 3444444555555554 56667778877777776666553
No 145
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=7.1e-07 Score=84.03 Aligned_cols=312 Identities=15% Similarity=0.067 Sum_probs=160.3
Q ss_pred HHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccc
Q 013253 78 FIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRG 157 (447)
Q Consensus 78 ~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~ 157 (447)
..+-|..-.+...+.+.+.|+.|.|+.+.++...+..--+.-+-+|-+.+++.-.+.|+|.+..+..-.. +++|+..|.
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~-ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGG-YLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccce-ehhhcCChh
Confidence 4445555556677899999999999999999998887656666777888999999999999998877655 889886666
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc--cccCcc-c----------hhhhHHHHHHHHHHHHH--Hhcccc
Q 013253 158 FEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS--FSLGPV-A----------PFDAAACFLAIGMVIIL--SSWTEN 222 (447)
Q Consensus 158 ~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~--~~~~~~-~----------~f~~~~~~~~~~~~~~~--~~~~~~ 222 (447)
...+..+..++.+. .+..+|.++--.+...-... ..-.-+ . ...+..++..+..+... .+.|.+
T Consensus 135 tie~Nisi~Wai~~-~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~ 213 (461)
T KOG3098|consen 135 TIERNISIFWAIGQ-SSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSK 213 (461)
T ss_pred hHHHHHHHHHHHHH-HHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCcc
Confidence 55554444444322 22223332221111110000 000000 0 00111111111111111 112221
Q ss_pred CCCC-CCch-hHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhccccccc--ccCCCCc----hHHHHHHHHHH
Q 013253 223 YGDP-SESK-DLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSP--NDEEIPH----GFIFATFMLAS 294 (447)
Q Consensus 223 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~i~~ 294 (447)
.... .+.. ....+..+..-+..++++.+.+..... ..+....+.....|.... ...+.+. +......+++.
T Consensus 214 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~ml~L~~~f~-~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~ 292 (461)
T KOG3098|consen 214 DVVNCKSSSETSFSELLKLTFKLLKTPKMLLLFPFFF-YTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGE 292 (461)
T ss_pred chhhhhhhccccHHHHHHHHHHHhcCHhHHHHHHHHH-HHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHH
Confidence 1111 1111 011111122234556666655543332 233333334455555432 1233333 34444555667
Q ss_pred HHHHHHHHHHhhc---CCCcchhHHHHHHHHHHHHHHHHHHhhhccC---CCCCCCCccccchhhHHHHHHHHHhhhccc
Q 013253 295 MLGSSLASRLMAR---SPPRVESYMQIVFVVSSVSLLLPIVTSFLVA---PSNVKSGGISFSGSLQLLGFCTFEACVGIF 368 (447)
Q Consensus 295 ~~~~~~~g~l~dr---~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 368 (447)
+++....+.+.|| +|+++. +..+..+......+......... +.+.+............+...+.|++-...
T Consensus 293 v~~g~~~~~l~~rir~fg~~~~--~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~ 370 (461)
T KOG3098|consen 293 VIGGLDFSILSKRIRGFGRKPT--VLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACF 370 (461)
T ss_pred HHHHHHHHHHhhhhhhcccCcc--hhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHH
Confidence 7777777777766 455552 33333333333333222222111 111111112222346677788889999988
Q ss_pred hhHHHHHHhhcCChhhhccccchhhhh
Q 013253 369 WPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 369 ~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
....+..+.+..|+ .|..+.++..+-
T Consensus 371 ~t~~~~ii~~~~~~-~~~~~fsi~kfy 396 (461)
T KOG3098|consen 371 NTQRYVIIALLYPD-DRAQAFSLFKFY 396 (461)
T ss_pred HHHHHHHHHHHhcC-chHHHHHHHHHH
Confidence 88899999999955 466666665543
No 146
>PRK09952 shikimate transporter; Provisional
Probab=98.99 E-value=4.2e-08 Score=94.77 Aligned_cols=159 Identities=15% Similarity=0.083 Sum_probs=96.0
Q ss_pred chhHhHh-HhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HH--h--cCchhHHHHHH
Q 013253 57 GPYVYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT--K--HSPQYKILMIG 130 (447)
Q Consensus 57 ~~~l~~i-~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~--~--~~~~~~~l~~~ 130 (447)
....|.. .+++|.+..+...+.......+.+..++.|+++||+||||.+..+.++..++. .. . ..++.+.+++.
T Consensus 270 ~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (438)
T PRK09952 270 TAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFS 349 (438)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 3444443 46788887655443333334455666789999999999999888876655442 11 1 12334444556
Q ss_pred HHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHH
Q 013253 131 RILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI 210 (447)
Q Consensus 131 r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~ 210 (447)
.++.+++.+...+...+ +++|.-+.+.+.. ..+.....+..++..++|.+.+++.+..+.+|..++....+..++
T Consensus 350 ~~l~~~~~~~~~~~~~~-~~~e~~p~~~r~t----g~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i 424 (438)
T PRK09952 350 IMLANIAHDMVVCVQQP-MFTEMFGASYRYS----GAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLI 424 (438)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHCCcchhHH----HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 67777887777666644 7788633333222 233334555667778888888888765544566666666665555
Q ss_pred HHHHHHHhccc
Q 013253 211 GMVIILSSWTE 221 (447)
Q Consensus 211 ~~~~~~~~~~~ 221 (447)
..+... ..+|
T Consensus 425 ~~v~~~-~~~~ 434 (438)
T PRK09952 425 SAMTAL-LMKD 434 (438)
T ss_pred HHHHHH-Hccc
Confidence 544443 3444
No 147
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.98 E-value=3.2e-08 Score=95.57 Aligned_cols=111 Identities=15% Similarity=0.165 Sum_probs=80.1
Q ss_pred hhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 013253 267 VFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVK 343 (447)
Q Consensus 267 ~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (447)
...+.|.+.++ ++.+. +...+...++..+++++.|++.||+|||+. +..+..+..++..........
T Consensus 42 ~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~--~~~~~~~~~~~~~~~~~~~~~------- 111 (434)
T PRK11663 42 FNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYF--MGIGLIATGIINILFGFSSSL------- 111 (434)
T ss_pred HHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchh--HHHHHHHHHHHHHHHHHHhHH-------
Confidence 35566766554 56654 677778889999999999999999999873 555555544444433322221
Q ss_pred CCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 344 SGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 344 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+...+..++.+++.+..++...+++.|.+|+++|++++|+.+..
T Consensus 112 --------~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~ 155 (434)
T PRK11663 112 --------WAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTA 155 (434)
T ss_pred --------HHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 24455566778888888899999999999999999999887664
No 148
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.98 E-value=2.3e-08 Score=96.15 Aligned_cols=132 Identities=13% Similarity=0.099 Sum_probs=84.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcC-CCcchhHHHHHHHHHH
Q 013253 249 IALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARS-PPRVESYMQIVFVVSS 324 (447)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~-g~~~~~~l~~~~~~~~ 324 (447)
++........-....|. ...++|.|+++..+.+. +...........++.+++|+++||+ |||+. +..+..+..
T Consensus 11 l~~l~~~~~~e~fs~Yg-~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~--iliG~il~~ 87 (493)
T PRK15462 11 IYYVVALQIWEYFSFYG-MRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMA--VMLGALLMA 87 (493)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH--HHHHHHHHH
Confidence 34433333333444444 67789999887777766 4555666677888999999999998 99883 555555544
Q ss_pred HHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChh--hhccccchhhhhhh
Q 013253 325 VSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEE--ARSTIMNFFRIPLN 397 (447)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~ 397 (447)
+...+....... + ....+...+..++.+...+...+++.|.+|++ .|.++.++.....+
T Consensus 88 lg~lll~~~~~~--~------------~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~n 148 (493)
T PRK15462 88 IGHVVLGASEIH--P------------SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGN 148 (493)
T ss_pred HHHHHHHHhhcc--h------------hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHH
Confidence 443332211110 0 12334444555677777788889999999976 68888888776543
No 149
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.96 E-value=8.5e-11 Score=114.56 Aligned_cols=254 Identities=11% Similarity=0.083 Sum_probs=3.0
Q ss_pred hhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhc----Cc----
Q 013253 52 GDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH----SP---- 122 (447)
Q Consensus 52 ~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~----~~---- 122 (447)
..++....+..+.++|+++.++.|++.+..-+...+..++..++.+|..|-|.+-++.++.+++. +.++ .+
T Consensus 18 ~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~ 97 (539)
T PF03137_consen 18 VSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSY 97 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcc
Confidence 33444555667889999999999999888878777888889999999888888888888888875 3221 10
Q ss_pred ------------------------------------------hhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhh
Q 013253 123 ------------------------------------------QYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQ 160 (447)
Q Consensus 123 ------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~ 160 (447)
-+..++++.++.|+|....++...+ |+-|..+++...
T Consensus 98 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~t-YiDDnv~~~~sp 176 (539)
T PF03137_consen 98 EEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGIT-YIDDNVSKKNSP 176 (539)
T ss_dssp ------------------------------------------------------SSS-----------------------
T ss_pred ccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceee-eeccccccccCc
Confidence 0237788999999999999999977 999984444433
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc----------------cccC----ccchhhhHHHHHHHHHHHHH---H
Q 013253 161 QWLSITFSKAIFLGNGLVAILSGLFGNLLVDS----------------FSLG----PVAPFDAAACFLAIGMVIIL---S 217 (447)
Q Consensus 161 ~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~----------------~~~~----~~~~f~~~~~~~~~~~~~~~---~ 217 (447)
-+.+. ......+|+.+|-.+++...+. .+-+ |-.-|.+.+.+.++..+... +
T Consensus 177 lYiGi-----~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk 251 (539)
T PF03137_consen 177 LYIGI-----LYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPK 251 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhh-----hhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 32222 2223445555554544433221 0112 33444444444444333332 2
Q ss_pred hccccCCCC-------CCch----h-------------HHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccc
Q 013253 218 SWTENYGDP-------SESK----D-------------LLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPA 273 (447)
Q Consensus 218 ~~~~~~~~~-------~~~~----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (447)
.+|++++.+ ++.+ + ..+...+..+++++||.++...+...+-.....+ ..++.|.
T Consensus 252 ~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G-~~tF~pK 330 (539)
T PF03137_consen 252 KLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSG-FATFLPK 330 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 233331000 0000 0 0111222445677888887777666665555554 5889999
Q ss_pred cccccCCCCchHH---HHHHH-HHHHHHHHHHHHHhhcCCCcc
Q 013253 274 LSPNDEEIPHGFI---FATFM-LASMLGSSLASRLMARSPPRV 312 (447)
Q Consensus 274 ~~~~~~~~~~~~~---~~~~~-i~~~~~~~~~g~l~dr~g~~~ 312 (447)
|++.+++.+++.. ..... .++++|.+++|++.+|++-+.
T Consensus 331 ylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~ 373 (539)
T PF03137_consen 331 YLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSA 373 (539)
T ss_dssp -------------------------------------------
T ss_pred HHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcH
Confidence 9999999887333 22222 357789999999999985443
No 150
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.95 E-value=5.1e-08 Score=91.06 Aligned_cols=156 Identities=21% Similarity=0.202 Sum_probs=111.7
Q ss_pred hhhhhcchhHhHhHhhc-CCCCcchhHHHHHHHHhhhhhccccchhhhccCchh-HHHHHHHHHHHHH-HHhcCchhHHH
Q 013253 51 AGDWLQGPYVYYLYSTY-GFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKR-ACVTYCLTYILSC-ITKHSPQYKIL 127 (447)
Q Consensus 51 ~~~~~~~~~l~~i~~~~-g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~-~l~~~~~~~~i~~-l~~~~~~~~~l 127 (447)
..........|...++. |.++.+.+...........++.++.|++.||+|||+ .+..+..+..++. .....++.+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 268 (352)
T cd06174 189 FGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALL 268 (352)
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 33333355566666554 899999998888888888888889999999999999 9999988888876 55778888999
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHH
Q 013253 128 MIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACF 207 (447)
Q Consensus 128 ~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~ 207 (447)
.+..++.|++.+...+.... ++.|..+++.+... .+ .......++..+++.+.+.+.+. .+|+..+.+.+++
T Consensus 269 ~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~-~~~~~~~~~~~i~~~i~g~l~~~--~~~~~~~~~~~~~ 340 (352)
T cd06174 269 LVALLLLGFGLGFAFPALLT-LASELAPPEARGTA----SG-LFNTFGSLGGALGPLLAGLLLDT--GGYGGVFLILAAL 340 (352)
T ss_pred HHHHHHHHHHHhccchhHHH-HHHhhcCHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHhcc--cCcchHHHHHHHH
Confidence 99999999999999888755 77776333232221 11 22233446666777777776653 4556777777776
Q ss_pred HHHHHHH
Q 013253 208 LAIGMVI 214 (447)
Q Consensus 208 ~~~~~~~ 214 (447)
.++..+.
T Consensus 341 ~~i~~i~ 347 (352)
T cd06174 341 ALLAALL 347 (352)
T ss_pred HHHHHHH
Confidence 6665444
No 151
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.95 E-value=7.1e-08 Score=91.82 Aligned_cols=158 Identities=13% Similarity=0.054 Sum_probs=90.5
Q ss_pred HHHhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhh-hhhccccchhhhccCchhHHHHHHHHHHHHH-HH-h-----
Q 013253 48 LMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSS-MLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT-K----- 119 (447)
Q Consensus 48 ~~~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~-~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~-~----- 119 (447)
+..........+.+...+|.|.+++++|.+........ .++..+.|++.||+|+|+.+..+..+.++.. .. .
T Consensus 219 l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 298 (390)
T TIGR02718 219 LSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFW 298 (390)
T ss_pred HHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33333333344555666788999999998877654333 3445689999999999999988776653322 11 1
Q ss_pred cCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhccc-chhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCcc
Q 013253 120 HSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKR-GFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPV 198 (447)
Q Consensus 120 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r-~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~ 198 (447)
..++...+.....+.+++.+...+...+ ...+...+ +...... ...+. ...+|..++|.+++.+.+.. +++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~g~~~-~~~~~----~~~lg~~~g~~~~G~l~~~~--G~~ 370 (390)
T TIGR02718 299 LAPGIAVAWSCSAFGSLITGITSVAIYT-AFMRFAGDGDQAGTDV-TAVQS----TRDLGELIASSIAGYLTDRF--GYA 370 (390)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCcccchHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHH--ccH
Confidence 1234444455556666666766665544 43333211 2222111 11221 23466677777777777654 455
Q ss_pred chhhhHHHHHHHHHH
Q 013253 199 APFDAAACFLAIGMV 213 (447)
Q Consensus 199 ~~f~~~~~~~~~~~~ 213 (447)
..|...+.+.++..+
T Consensus 371 ~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 371 GGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHH
Confidence 667766665555443
No 152
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.94 E-value=1.1e-07 Score=90.09 Aligned_cols=142 Identities=13% Similarity=0.041 Sum_probs=89.7
Q ss_pred HhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HH-hcCchhHHHHHHHHHHHhhhh
Q 013253 62 YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT-KHSPQYKILMIGRILGGIATS 139 (447)
Q Consensus 62 ~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~-~~~~~~~~l~~~r~l~G~~~~ 139 (447)
.+.+.+|.++.+.+...+...+...++.++.|++.||+|+|+.+..+..+.+++. +. ...++.+...+..++.+.+..
T Consensus 225 ~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~ 304 (382)
T PRK10091 225 YMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLF 304 (382)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3445689999999988887777788888899999999999999998888777765 33 345555666666666776655
Q ss_pred hhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHH
Q 013253 140 LLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIG 211 (447)
Q Consensus 140 ~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~ 211 (447)
...+........+. ++++..+.. .. .....+|..++|.+++.+.+.. ++|+..+...+.+..+.
T Consensus 305 ~~~~~~~~~~~~~~-~~~~~~~~~-----~~-~~~~~~g~~~Gp~~~G~l~~~~-~~~~~~~~~~~~~~~~~ 368 (382)
T PRK10091 305 ALSAPLQILLLQNA-KGGELLGAA-----GG-QIAFNLGSAIGAYCGGMMLTLG-LAYNYVALPAALLSFAA 368 (382)
T ss_pred hhhHHHHHHHHHhC-CcchHHHHH-----HH-HHHHHHHHHHHHHHhHHHHHcc-cCcchHHHHHHHHHHHH
Confidence 54444333233332 222222211 01 2234577777778888777632 34556666555444443
No 153
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.94 E-value=2.1e-08 Score=95.63 Aligned_cols=123 Identities=9% Similarity=0.020 Sum_probs=85.0
Q ss_pred HHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHH
Q 013253 255 IQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPI 331 (447)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~ 331 (447)
...+...+.+. ...+.|.+++++.+.+. |...+...+...+.+++.|+++||+|||+. +..+.....+......
T Consensus 18 ~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~--l~~~~~~~~~~~~~~~ 94 (400)
T PRK11646 18 DNMLVVLGFFV-VFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPM--IVTGMLMRAAGFATMA 94 (400)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHH--HHHHHHHHHHHHHHHH
Confidence 33333334333 45667777776667666 666677777788888999999999998873 5555555544444432
Q ss_pred HhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 332 VTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
...+ .+...+..++.+++.+...|...+++.|..|+++|+++.|+.+..
T Consensus 95 ~~~~---------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 143 (400)
T PRK11646 95 IAHE---------------PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQ 143 (400)
T ss_pred Hhcc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2211 135566677778888777888999999999999999999887654
No 154
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.93 E-value=1.2e-08 Score=97.54 Aligned_cols=110 Identities=11% Similarity=0.040 Sum_probs=79.0
Q ss_pred hhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 013253 268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS 344 (447)
Q Consensus 268 ~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (447)
....|.+ ++.++.+. +...+...++..++.++.|+++||+|||+. +..+..+..+...........
T Consensus 32 ~~~~~~l-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~--~~~~~~~~~~~~~~~~~~~~~-------- 100 (405)
T TIGR00891 32 ALVLAEV-AGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLP--MVTSIVLFSAGTLACGFAPGY-------- 100 (405)
T ss_pred HHHHHHH-HHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHHHHHHHhccH--------
Confidence 3344444 34455554 777788889999999999999999999983 444444444443333222211
Q ss_pred CccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 345 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+...+..++.|++.+...+...+++.|..|+++|+++.++.+..
T Consensus 101 -------~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 144 (405)
T TIGR00891 101 -------ITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISG 144 (405)
T ss_pred -------HHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHH
Confidence 35567788889999988899999999999999999999887764
No 155
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.93 E-value=2.3e-08 Score=94.93 Aligned_cols=103 Identities=15% Similarity=0.054 Sum_probs=75.6
Q ss_pred cccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchh
Q 013253 276 PNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGS 352 (447)
Q Consensus 276 ~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (447)
.++++.+. +...+...++..++.++.|++.||+|||+. +..+..+..+........... +
T Consensus 32 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~--~~~~~~~~~~~~~~~~~~~~~---------------~ 94 (385)
T TIGR00710 32 AADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPV--LLLGLFIFALSSLGLALSNNI---------------E 94 (385)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHH--HHHHHHHHHHHHHHHHHHccH---------------H
Confidence 34455554 777788888999999999999999999873 444444444444433222211 3
Q ss_pred hHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 353 LQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 353 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
...+..++.|++.+...+...+++.|.+|+++|++..+..+..
T Consensus 95 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (385)
T TIGR00710 95 TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPV 137 (385)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5566778888888888899999999999999999998887654
No 156
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.92 E-value=1.7e-08 Score=94.56 Aligned_cols=111 Identities=22% Similarity=0.272 Sum_probs=80.9
Q ss_pred hhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 013253 268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS 344 (447)
Q Consensus 268 ~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (447)
....|.+..++++.+. +...+...++..++.++.|+++||+|||+ .+..+..+..+......+....
T Consensus 16 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~--~l~~~~~~~~~~~~~~~~~~~~-------- 85 (352)
T PF07690_consen 16 SPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRR--VLIIGLLLFALGSLLLAFASNF-------- 85 (352)
T ss_dssp HHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHH--HHHHHHHHHHHHHHHHHHHCCH--------
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCee--eEeehhhhhhhHHHHhhhhhhH--------
Confidence 3344534455556544 77888888999999999999999999888 3555555555553333321111
Q ss_pred CccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 345 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+..++..++.|++.+...+...+++.|.+|+++|++.+++.+..
T Consensus 86 -------~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 129 (352)
T PF07690_consen 86 -------WLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAG 129 (352)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHH
T ss_pred -------HHHhhhccccccccccccccccccccccchhhhhhhccccccch
Confidence 36678888999999999999999999999999999999887764
No 157
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.92 E-value=3.9e-08 Score=95.79 Aligned_cols=158 Identities=12% Similarity=0.130 Sum_probs=96.6
Q ss_pred chhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhc-CCCcchhHHHHHHH
Q 013253 246 DEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMAR-SPPRVESYMQIVFV 321 (447)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~~~l~~~~~ 321 (447)
+|+-....+...+.....++....+++.|+++.++.+. +.....+........+++|+++|| +|||+. +..+..
T Consensus 12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~--~~~g~~ 89 (489)
T PRK10207 12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRT--IVLGAI 89 (489)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHH--HHHHHH
Confidence 34333333333333333344457778888887777766 334444555566667799999999 999984 555555
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhh--hccccchhhhhhh--
Q 013253 322 VSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA--RSTIMNFFRIPLN-- 397 (447)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~~~-- 397 (447)
+..+........... .....+...+.+++.+...|...+++.|.+|++. |++++++..+..|
T Consensus 90 ~~~~g~~~~~~~~~~--------------~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig 155 (489)
T PRK10207 90 VLAIGYFMTGMSLLK--------------PDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIG 155 (489)
T ss_pred HHHHHHHHHHHhccc--------------hhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHH
Confidence 555554443322111 0134466777889999888999999999998874 4667776666433
Q ss_pred ----HHHHHHHHhhcccchHHHHHHHHH
Q 013253 398 ----IFVCVVLYNVDAFPITVMFGMCSI 421 (447)
Q Consensus 398 ----~~~~~~l~~~~~~~~~~~~~~~~~ 421 (447)
..+++++.+.. ++...|.++.+
T Consensus 156 ~~~g~~l~g~l~~~~--gw~~~F~i~~i 181 (489)
T PRK10207 156 SLISLSLAPVIADKF--GYSVTYNLCGA 181 (489)
T ss_pred HHHHHHHHHHHHHhh--ChHHHHHHHHH
Confidence 34455555543 44455555433
No 158
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.90 E-value=4.6e-08 Score=94.63 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=61.7
Q ss_pred CCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcC-chhHHHHHHHHHHHhhhhhhhhhhhH
Q 013253 70 GKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS-PQYKILMIGRILGGIATSLLFSAFES 147 (447)
Q Consensus 70 s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~ 147 (447)
++.+.+.+.....+...++.+++++++||+|||+.+..+..+.+++. +..+. ++.+.+.+..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666677778899999999999999999988877765 33333 46677777888899998888777655
Q ss_pred HHHhhh
Q 013253 148 WLVAEH 153 (447)
Q Consensus 148 ~~i~~~ 153 (447)
+++|.
T Consensus 335 -~~~~~ 339 (437)
T TIGR00792 335 -LVADT 339 (437)
T ss_pred -HHhhh
Confidence 65554
No 159
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.90 E-value=5.1e-08 Score=88.85 Aligned_cols=201 Identities=15% Similarity=0.210 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHhhcccCccCCCCCcc--------cchhhHHHHHHHHHHHhhhhhc-chhHhHh-HhhcCCCCcc
Q 013253 4 FFYLVFGALGAVVAALELSKTNKDRINTSSA--------FNSFKNNYLLVYSLMMAGDWLQ-GPYVYYL-YSTYGFGKGE 73 (447)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~l~~i-~~~~g~s~~~ 73 (447)
..|+....+..++..+-|+...+.+...++. .++.+.+.+.......++..+. +..+|.. .++|+.++.+
T Consensus 176 ~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~ 255 (417)
T COG2223 176 GIYVVALAIAAVLAWLGMNDVPEHRASVKPQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVT 255 (417)
T ss_pred HHHHHHHHHHHHHHHHHhCCChhhhccccccchhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 3455566665666666665544422222111 1122333444444444544444 4445544 4789999999
Q ss_pred hhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcC-------chhH----HHHHHHHHHHhhhhhh
Q 013253 74 IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS-------PQYK----ILMIGRILGGIATSLL 141 (447)
Q Consensus 74 ~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~-------~~~~----~l~~~r~l~G~~~~~~ 141 (447)
.|...+.....+.+..+.+|+++||+|.+|++.......+++. +..+. ++.. .++...+..|+|.|..
T Consensus 256 Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsv 335 (417)
T COG2223 256 AGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSV 335 (417)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchh
Confidence 9988888888899999999999999999999999888887754 33332 3333 4556667777777776
Q ss_pred hhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHHH
Q 013253 142 FSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIIL 216 (447)
Q Consensus 142 ~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~ 216 (447)
+-.... +-.+ +-+. ..........+|...-|..-+...+..+ .+...|++...+.+++..+..
T Consensus 336 fk~Ip~-if~~--~~G~--------v~G~vga~G~lGGf~lp~~~g~~~~~tg-~~~~~f~~~~~~~~~a~v~~~ 398 (417)
T COG2223 336 FKMIPV-IFPK--ETGA--------VTGIVGAIGGLGGFFLPLAFGVSLDLTG-SYTGAFMLLLAFYLVALVLTW 398 (417)
T ss_pred eeechH-HHHh--hhhH--------HHHHHHHhccccccchhHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHH
Confidence 554422 2111 1111 1112222233454444444444444444 466777777766666655444
No 160
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.90 E-value=4.8e-08 Score=93.18 Aligned_cols=139 Identities=13% Similarity=0.122 Sum_probs=94.7
Q ss_pred CCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHhhhhhhhhhhh
Q 013253 68 GFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFE 146 (447)
Q Consensus 68 g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 146 (447)
+.+..+.|.+.+...+...+.....|++.||+|||+.+.++..+.+++. +...++|.+.++..+++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667877777777677777789999999999999999988888875 447788999889999999988766544432
Q ss_pred HHHHhhh-cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHH
Q 013253 147 SWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVI 214 (447)
Q Consensus 147 ~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~ 214 (447)
. +..+. ++|.... ..+.+......+|..+++.+++++.+.. +++..|...+++.++..+.
T Consensus 330 ~-~~~~~~~~~~~at-----~~~~~~~~~~~lg~~~~~~l~G~l~~~~--G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 330 K-YITSQFDVRLSAT-----IYLIGFQFAKQLAMIFLSTLAGNMYDSI--GFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred H-HHHHhCCcceEEE-----eehHHHHHHHHHHHHHHHHhHHHHHHhc--ccHHHHHHHHHHHHHHHHH
Confidence 2 44443 2332211 1111223345677788888888888654 5567777766666554443
No 161
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=98.90 E-value=1.6e-07 Score=86.29 Aligned_cols=148 Identities=20% Similarity=0.239 Sum_probs=93.0
Q ss_pred HHhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhh----ccCchhHHHHHHHHH-HHHH-HHhcCc
Q 013253 49 MMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD----KQGRKRACVTYCLTY-ILSC-ITKHSP 122 (447)
Q Consensus 49 ~~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~D----r~Grr~~l~~~~~~~-~i~~-l~~~~~ 122 (447)
..++...+..++++..++.|++....+.+...+-+.+.+.+|+.|..+| ||||||.++....+. .++. +..++.
T Consensus 44 vqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aa 123 (498)
T KOG0637|consen 44 VQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAA 123 (498)
T ss_pred HHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHh
Confidence 3445556677788888999999999888888888889999999999999 589999887776555 4454 445554
Q ss_pred hhH-----------------HHHHHHHHHHhhhhhhhhhhhHHHHhhh---cccch-hhhHHHHHHHHHHHHHHHHHHHH
Q 013253 123 QYK-----------------ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGF-EQQWLSITFSKAIFLGNGLVAIL 181 (447)
Q Consensus 123 ~~~-----------------~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~-~~~~~~~~~~~~~~~g~~ig~~~ 181 (447)
++. .++++-.+.=++....+..+.+ ++.|. +++.+ ..+. ++....+|+.+|..+
T Consensus 124 Dig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra-~L~Dl~~~d~~~~~Ans~----f~~f~avGnvLGY~~ 198 (498)
T KOG0637|consen 124 DIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRA-LLADLARGDAKKTRANSV----FSFFMAVGNVLGYAL 198 (498)
T ss_pred hhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHH-HHHHhccChhhhhccchh----HHHHHHhcceeeeec
Confidence 443 3334444444566566677766 77776 22222 4443 444444455444444
Q ss_pred hhhhhhhhhcccccCccchhhhHHHHHH
Q 013253 182 SGLFGNLLVDSFSLGPVAPFDAAACFLA 209 (447)
Q Consensus 182 ~~~l~~~l~~~~~~~~~~~f~~~~~~~~ 209 (447)
++ +.+|+-..+|.....+-+
T Consensus 199 g~--------y~~~~~~~~Ft~~~~~~~ 218 (498)
T KOG0637|consen 199 GS--------YLGLYKIFPFTLTTACDL 218 (498)
T ss_pred cc--------ccCceEEeehHHHHHHHH
Confidence 43 234444455554443333
No 162
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.90 E-value=3.5e-08 Score=96.24 Aligned_cols=152 Identities=11% Similarity=-0.007 Sum_probs=92.2
Q ss_pred hhHhHh-HhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH---HHhcCchhHHHHHHHHH
Q 013253 58 PYVYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC---ITKHSPQYKILMIGRIL 133 (447)
Q Consensus 58 ~~l~~i-~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~---l~~~~~~~~~l~~~r~l 133 (447)
..+|.. .+++|.|..+.+.......+.+.++.+++|+++||+|||+.+.....+..++. .....++.+.+.+.+++
T Consensus 279 ~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (467)
T PRK09556 279 NWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFA 358 (467)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 345544 46799999999888777777777888899999999999998776554443332 22345566667778888
Q ss_pred HHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc----------cccCccchhhh
Q 013253 134 GGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDS----------FSLGPVAPFDA 203 (447)
Q Consensus 134 ~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~----------~~~~~~~~f~~ 203 (447)
.|+........... ...|..+++.+.. ..+.....++..|..++|.+.+.+.+. ...+|+..|.+
T Consensus 359 ~G~~~~~~~~~~~~-~~~~~~p~~~~g~----a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~ 433 (467)
T PRK09556 359 LGFLVFGPQLLIGV-AAVGFVPKKAIGV----ANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAA 433 (467)
T ss_pred HHHHHhhHHHHHHH-HHHhhcchhhHHH----HHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHH
Confidence 88643332222112 4446533333222 223233344444667777777777761 02346777777
Q ss_pred HHHHHHHHHHH
Q 013253 204 AACFLAIGMVI 214 (447)
Q Consensus 204 ~~~~~~~~~~~ 214 (447)
..+..+++.+.
T Consensus 434 ~~~~~~~~~~~ 444 (467)
T PRK09556 434 LDIAAIGCICL 444 (467)
T ss_pred HHHHHHHHHHH
Confidence 65555554433
No 163
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.89 E-value=5.1e-07 Score=88.38 Aligned_cols=147 Identities=15% Similarity=0.208 Sum_probs=87.7
Q ss_pred HhHhhcCCCCcchhHHH-HHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH----HHhcC-chhHHHHHHHHHHH
Q 013253 62 YLYSTYGFGKGEIGQLF-IAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC----ITKHS-PQYKILMIGRILGG 135 (447)
Q Consensus 62 ~i~~~~g~s~~~~g~~~-~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~----l~~~~-~~~~~l~~~r~l~G 135 (447)
.+.+++|.|+.+.+... ..+.+...++.+++|+++||+|+|+.+..+.++.+++. ..+.. ++.+.+...-++..
T Consensus 248 ~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~ 327 (491)
T PRK11010 248 FLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFEN 327 (491)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 34467899999999876 45556666777789999999999998877665544432 12333 45555555555545
Q ss_pred hhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHH
Q 013253 136 IATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVII 215 (447)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~ 215 (447)
+..+...+...+ +..+..++...... ++ ..+....+|..+++.+.+.+.+.. +|+..|.+..++.+...+..
T Consensus 328 ~~~g~~~~~~~a-~~~~l~~~~~~~t~----~g-l~~s~~~lg~~~~~~~~G~l~~~~--G~~~~f~~~~~~~l~~l~~~ 399 (491)
T PRK11010 328 LCGGMGTAAFVA-LLMTLCNKSFSATQ----FA-LLSALSAVGRVYVGPVAGWFVEAH--GWPTFYLFSVAAAVPGLLLL 399 (491)
T ss_pred HHHHHHHHHHHH-HHHHHcCCCCcHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHH
Confidence 444444444333 44454333333221 22 122223466666667777777654 45667777666666655544
Q ss_pred H
Q 013253 216 L 216 (447)
Q Consensus 216 ~ 216 (447)
.
T Consensus 400 ~ 400 (491)
T PRK11010 400 L 400 (491)
T ss_pred H
Confidence 4
No 164
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.89 E-value=2.1e-07 Score=89.72 Aligned_cols=154 Identities=16% Similarity=0.138 Sum_probs=112.0
Q ss_pred HhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCch--hHHHHHHHHHHHHH-HHhc--------CchhHHHHHHHH
Q 013253 64 YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRK--RACVTYCLTYILSC-ITKH--------SPQYKILMIGRI 132 (447)
Q Consensus 64 ~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr--~~l~~~~~~~~i~~-l~~~--------~~~~~~l~~~r~ 132 (447)
.+++|++..++..+.....+.+.+++.++|++.||+|.| +++..+++++.+.. ...+ .++-+.+.+.-+
T Consensus 309 ~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~ 388 (477)
T PF11700_consen 309 TEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAV 388 (477)
T ss_pred HHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHH
Confidence 368999999998777777777888888999999999999 89888888875533 2233 567788999999
Q ss_pred HHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHH
Q 013253 133 LGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM 212 (447)
Q Consensus 133 l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~ 212 (447)
+.|+..|..++...+ +.+|..++++.... +++.. +..-....++|.+-+.+.+..+ +-|..+....++.++.+
T Consensus 389 ~~G~~~G~~qs~sRs-~~~~LiP~g~e~ef----Fgly~-i~gk~ss~lGPll~g~i~~~tg-~~r~g~~~l~~lf~~gl 461 (477)
T PF11700_consen 389 LIGLFMGGIQSASRS-LFSRLIPPGREAEF----FGLYA-ITGKASSWLGPLLFGLITDATG-SQRYGFLFLLVLFLIGL 461 (477)
T ss_pred HHHHHhhhHHHHHHH-HHHHhCCCchhhHH----HHHHH-HHHHHHHHHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHH
Confidence 999999999999977 88988777776553 33222 2334666777777777776554 34666666666666665
Q ss_pred HHHHHhccccCCC
Q 013253 213 VIILSSWTENYGD 225 (447)
Q Consensus 213 ~~~~~~~~~~~~~ 225 (447)
++.. +.++++++
T Consensus 462 ~ll~-~v~~~~g~ 473 (477)
T PF11700_consen 462 ILLF-FVDVEKGR 473 (477)
T ss_pred HHHh-hccchhhh
Confidence 5554 45544443
No 165
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.89 E-value=2.5e-08 Score=94.88 Aligned_cols=130 Identities=13% Similarity=0.151 Sum_probs=89.1
Q ss_pred chhHhHhH-hhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHH-HH--HHhc--CchhHHHHHH
Q 013253 57 GPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SC--ITKH--SPQYKILMIG 130 (447)
Q Consensus 57 ~~~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i-~~--l~~~--~~~~~~l~~~ 130 (447)
..++|.+. +++|.++.+.+.......+...+..++.|+++||+|||+.+.....+..+ +. +..+ .++.+.+...
T Consensus 239 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (394)
T TIGR00883 239 TTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFL 318 (394)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 45566665 67899998998887777777778888999999999999987765544433 31 2222 3566777778
Q ss_pred HHHHHhhhhhhhhhhhHHHHhhhc---ccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 013253 131 RILGGIATSLLFSAFESWLVAEHN---KRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS 194 (447)
Q Consensus 131 r~l~G~~~~~~~~~~~~~~i~~~~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~ 194 (447)
.++.|++.+...+...+ ++.|.. +|++..+ .....+..+|..++|.+++.+.+..+
T Consensus 319 ~~~~g~~~~~~~~~~~~-~~~~~~p~~~~~~~~~-------~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 319 VLGLALIGGMYTGPMGS-FLPELFPTEVRYTGAS-------LAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred HHHHHHHHHHHhhhHHH-HHHHhCCccceeeEee-------ehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 88899988888777755 777763 3333322 12233455666777788887776655
No 166
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.88 E-value=6e-08 Score=97.90 Aligned_cols=109 Identities=15% Similarity=0.185 Sum_probs=78.1
Q ss_pred hcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 013253 269 LWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSG 345 (447)
Q Consensus 269 ~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (447)
...|.+. +.++.+. +.+.+...++.+++.++.|+++||+|||+. +..+..+..+..++..+....
T Consensus 188 ~ilp~i~-~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~--lii~lil~~i~~ll~afa~s~--------- 255 (742)
T TIGR01299 188 FVLPSAE-KDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQC--LLICLSVNGFFAFFSSFVQGY--------- 255 (742)
T ss_pred HHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH--HHHHHHHHHHHHHHHHHHhhH---------
Confidence 3444433 3345544 667777889999999999999999999983 444444444433333222221
Q ss_pred ccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 346 GISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 346 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+.+++.-++.|++.+...|...+++.|.+|++.|++..++.+..
T Consensus 256 ------~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~ 299 (742)
T TIGR01299 256 ------GFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMF 299 (742)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 35677788889999999999999999999999999988876653
No 167
>PRK15075 citrate-proton symporter; Provisional
Probab=98.87 E-value=9.3e-08 Score=92.33 Aligned_cols=137 Identities=13% Similarity=0.122 Sum_probs=82.2
Q ss_pred chhHhHhHh-hcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHH-HH-HH---hcCchhHHHHHH
Q 013253 57 GPYVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SC-IT---KHSPQYKILMIG 130 (447)
Q Consensus 57 ~~~l~~i~~-~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i-~~-l~---~~~~~~~~l~~~ 130 (447)
..+.|.+.+ .+|.+..+.++......+.+.++.++.|+++||+|||+.+..+..+..+ .. .. ...+++..+...
T Consensus 258 ~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (434)
T PRK15075 258 TVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAV 337 (434)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 455666655 4799988888776666666677778899999999999998876544432 21 11 123444444455
Q ss_pred HHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCcc
Q 013253 131 RILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPV 198 (447)
Q Consensus 131 r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~ 198 (447)
..+.|++.+...+.... ++.|.-+++.+.. ..+.....+..++..++|.+.+++.+..+++|.
T Consensus 338 ~~~~~~~~g~~~~~~~~-~~~e~~p~~~rg~----~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~ 400 (434)
T PRK15075 338 ELWLSFLYGSYNGAMVV-ALTEVMPAEVRTA----GFSLAYSLATAIFGGFTPAISTWLIHVTGDKAA 400 (434)
T ss_pred HHHHHHHHHHHHhhHHH-HHHHHCCCCccch----heeHHHHHHHHHHhhhHHHHHHHHHHhcCCchH
Confidence 55666666665554434 6677633222222 122223344444455677777787776665443
No 168
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.87 E-value=1.1e-07 Score=89.34 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=88.6
Q ss_pred hhHhHhHhh-cCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCc-hhHHHHHHHHHH
Q 013253 58 PYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSP-QYKILMIGRILG 134 (447)
Q Consensus 58 ~~l~~i~~~-~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~-~~~~l~~~r~l~ 134 (447)
...|...++ +|.++.+.+.+.....+...++.++.+++.||+|||+.+..+..+.+++. +..+.+ +.+.+.+..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI 311 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence 445565554 89999999988777777777778889999999999999988877776665 445566 488888899999
Q ss_pred HhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 013253 135 GIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVD 191 (447)
Q Consensus 135 G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~ 191 (447)
|++.+...+...+ ++.|..+++.+... .+ .......++..+++.+++.+.+
T Consensus 312 g~~~~~~~~~~~~-~~~~~~~~~~~g~~----~~-~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 312 GVGYGPINVPQGT-LLQRRVPAELLGRV----FG-AQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHHHHHHHHH-HHHHhCCHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988887755 67766333332221 11 1222233555566666666554
No 169
>PRK10504 putative transporter; Provisional
Probab=98.87 E-value=1.3e-07 Score=92.37 Aligned_cols=121 Identities=21% Similarity=0.230 Sum_probs=76.4
Q ss_pred hHhHhHh-hcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhc---CchhHHHHHHHHH
Q 013253 59 YVYYLYS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH---SPQYKILMIGRIL 133 (447)
Q Consensus 59 ~l~~i~~-~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~---~~~~~~l~~~r~l 133 (447)
..|...+ .+|.++.+.+.......+...+..++.|++.||+|||+++..+..+.+++. +..+ .++.+.+.+..++
T Consensus 283 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (471)
T PRK10504 283 MTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFL 362 (471)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 3444444 578898888877766666566666789999999999999998888777654 3333 2344445556677
Q ss_pred HHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 013253 134 GGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGL 184 (447)
Q Consensus 134 ~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~ 184 (447)
.|++.+...+.... +..+. +.++...+. .+....+|..+|+.+++.
T Consensus 363 ~g~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~----~~~~~~~g~~ig~~i~g~ 411 (471)
T PRK10504 363 QGMVNSTRFSSMNT-LTLKDLPDNLASSGNSL----LSMIMQLSMSIGVTIAGL 411 (471)
T ss_pred HHHHHHHHHHHHHH-HHHHcCCHHhccchHHH----HHHHHHHHHHHHHHHHHH
Confidence 88888877776644 54444 334444433 333333444444444433
No 170
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.87 E-value=8.5e-08 Score=92.71 Aligned_cols=113 Identities=19% Similarity=0.271 Sum_probs=75.8
Q ss_pred hhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 013253 268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS 344 (447)
Q Consensus 268 ~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (447)
....|.+.+. +.+. +...+...++..++.++.|+++||+|||+. +..+..+..+...........
T Consensus 47 ~~~~p~~~~~--g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~--~~~~~~~~~~~~~~~~~~~~~-------- 114 (438)
T TIGR00712 47 ALAMPYLVEQ--GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVF--LPAGLILSAAVMLLMGFVPWA-------- 114 (438)
T ss_pred HhhhHHHHHc--CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCcee--hHHHHHHHHHHHHHHhccccc--------
Confidence 3345544432 4444 777778889999999999999999998873 444444444443332221110
Q ss_pred CccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 345 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
....+...+..++.|++.+..++.....+.|.+|+++|++++|+.+..
T Consensus 115 ---~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~ 162 (438)
T TIGR00712 115 ---TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCA 162 (438)
T ss_pred ---cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHH
Confidence 000123455567778888888888889999999999999999987764
No 171
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.86 E-value=1.9e-07 Score=87.50 Aligned_cols=148 Identities=14% Similarity=0.065 Sum_probs=96.3
Q ss_pred HHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc--hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHH
Q 013253 242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH--GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIV 319 (447)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~ 319 (447)
+++.+++...+.+...+ .+....++.+++--++++..+.+. |......-.+.++.-+..+++.+|+|+-+. +..+
T Consensus 366 ~~~~s~~~llff~~av~-mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v--~~lg 442 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVV-MGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNV--MYLG 442 (618)
T ss_pred HHhcCCCEEehhHHHHH-HHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccce--eeeh
Confidence 44555554433222222 222233344444445566544443 655556667888899999999999998873 5455
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh----
Q 013253 320 FVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP---- 395 (447)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~---- 395 (447)
......=++......+. |..+..-++.|+..+..|...-+|++...|++.|+++.++.+..
T Consensus 443 La~~~~Rf~~~S~L~n~---------------W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~Gl 507 (618)
T KOG3762|consen 443 LACNVGRFLYYSYLQNP---------------WMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGL 507 (618)
T ss_pred hhHHHHHHHHHHHhcCc---------------hheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhccc
Confidence 44444444443333333 56777789999999999999999999999999999998876652
Q ss_pred ---hhHHHHHHHHhh
Q 013253 396 ---LNIFVCVVLYNV 407 (447)
Q Consensus 396 ---~~~~~~~~l~~~ 407 (447)
.|.++|+.+...
T Consensus 508 G~g~GslIGG~~v~~ 522 (618)
T KOG3762|consen 508 GKGLGSLIGGFVVER 522 (618)
T ss_pred Ccchhhhhhhhhhee
Confidence 455667666443
No 172
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.85 E-value=1.6e-07 Score=91.26 Aligned_cols=113 Identities=16% Similarity=0.256 Sum_probs=77.0
Q ss_pred hhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 013253 268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS 344 (447)
Q Consensus 268 ~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (447)
....|.+.++ +.+. +...+...++..+++++.|+++||+|||+. +..+..+..+............
T Consensus 49 ~~~~p~l~~~--g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~--l~~~~~~~~i~~~~~~~~~~~~------- 117 (452)
T PRK11273 49 ALAMPYLVEQ--GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF--LPAGLILAAAVMLFMGFVPWAT------- 117 (452)
T ss_pred HHhhHHHHHc--CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchh--HHHHHHHHHHHHHHHHhhhccc-------
Confidence 3455654433 5544 677788889999999999999999999883 5455444444443332221110
Q ss_pred CccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 345 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
. ..+...+...+.|++.+...|.....+.|.+|+++|++++|+.+..
T Consensus 118 ~----~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 164 (452)
T PRK11273 118 S----SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCA 164 (452)
T ss_pred c----cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 0 0124556667788888888888888889999999999999987654
No 173
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.85 E-value=1.3e-07 Score=86.28 Aligned_cols=113 Identities=19% Similarity=0.234 Sum_probs=90.2
Q ss_pred hhccccccccc-CCCCc-hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 013253 268 FLWTPALSPND-EEIPH-GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSG 345 (447)
Q Consensus 268 ~~~~~~~~~~~-~~~~~-~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (447)
+.-.|...++. ++.++ |.+.+...+..-++.++.|.++||.+.|.. +..+..+.+++.++..+....
T Consensus 49 ~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~f--m~~gLilsai~nil~Gfs~s~--------- 117 (448)
T COG2271 49 NLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYF--MAFGLILSAIVNILFGFSPSL--------- 117 (448)
T ss_pred hhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcee--ehHHHHHHHHHHHHHhhhhHH---------
Confidence 44455555543 33333 888899999999999999999999998873 667777777777776655433
Q ss_pred ccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhhhh
Q 013253 346 GISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLN 397 (447)
Q Consensus 346 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 397 (447)
+.+.+...+.|...|..+|.+...+.+-+|+++||+..++.+++-|
T Consensus 118 ------~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shN 163 (448)
T COG2271 118 ------FLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHN 163 (448)
T ss_pred ------HHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhh
Confidence 4778888999999999999999999999999999999999888633
No 174
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.84 E-value=5.6e-08 Score=93.71 Aligned_cols=104 Identities=14% Similarity=0.082 Sum_probs=77.6
Q ss_pred ccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccch
Q 013253 275 SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSG 351 (447)
Q Consensus 275 ~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (447)
.+++++.+. +...+...++..++.++.|+++||+|||+. +..+.....+...........
T Consensus 44 i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~--l~~~~~~~~~~~~~~~~~~~~--------------- 106 (426)
T PRK12307 44 IKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPL--MMWSIVAYSVGTGLSGLASGV--------------- 106 (426)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH--HHHHHHHHHHHHHHHHHHhHH---------------
Confidence 344556554 667777889999999999999999999883 555555554444443333222
Q ss_pred hhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 352 SLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 352 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+...+.-++.|++.+...+....++.|..|+++|+++.++....
T Consensus 107 ~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 150 (426)
T PRK12307 107 IMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSG 150 (426)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHH
Confidence 35677778889998888899999999999999999999887654
No 175
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.84 E-value=9.9e-08 Score=91.40 Aligned_cols=110 Identities=14% Similarity=0.070 Sum_probs=81.1
Q ss_pred hhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 013253 268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS 344 (447)
Q Consensus 268 ~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (447)
....| .++++++.+. +...+...++..+++++.|++.||+|||+. +..+..+..+.........+.
T Consensus 28 ~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~--~~~~~~~~~~~~~~~~~~~~~-------- 96 (412)
T TIGR02332 28 GFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRW--IAGIMVLWGIASTATMFATGP-------- 96 (412)
T ss_pred HHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHH--HHHHHHHHHHHHHHHHHhcCH--------
Confidence 33344 4556667665 677788888999999999999999999983 444444444444443322221
Q ss_pred CccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 345 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+...+.-++.|++.+...|....++.|.+|+++|+++.++.+..
T Consensus 97 -------~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~ 140 (412)
T TIGR02332 97 -------ESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIA 140 (412)
T ss_pred -------HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 35567778889999988899999999999999999999887764
No 176
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.84 E-value=1e-07 Score=89.88 Aligned_cols=110 Identities=16% Similarity=0.147 Sum_probs=78.8
Q ss_pred hhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhh-hccCCCCC
Q 013253 267 VFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTS-FLVAPSNV 342 (447)
Q Consensus 267 ~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~ 342 (447)
...+.|.+.++.++.+. +...+...++..++.++.|+++||+|||+. +..+..+..+......... ..
T Consensus 20 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~--~~~~~~~~~i~~~~~~~~~~~~------ 91 (366)
T TIGR00886 20 FSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYT--TTLSLLLLAIPCLWAGLAVQSY------ 91 (366)
T ss_pred hHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHH--HHHHHHHHHHHHHHHHHHhhhH------
Confidence 46677766666777766 677778889999999999999999999883 5555555554444433322 21
Q ss_pred CCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhh
Q 013253 343 KSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRI 394 (447)
Q Consensus 343 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 394 (447)
+...+..++.|++.+ ..+....++.|.+|+++|+++.++...
T Consensus 92 ---------~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~ 133 (366)
T TIGR00886 92 ---------SVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAG 133 (366)
T ss_pred ---------HHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHH
Confidence 345566677777744 456678899999999999999887653
No 177
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.84 E-value=3.6e-07 Score=87.51 Aligned_cols=126 Identities=12% Similarity=0.033 Sum_probs=79.9
Q ss_pred hHh-HhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhc-----CchhHHHHHHHHH
Q 013253 61 YYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH-----SPQYKILMIGRIL 133 (447)
Q Consensus 61 ~~i-~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~-----~~~~~~l~~~r~l 133 (447)
|.+ .+++|.++.+.+...........++.++.|+++||+|+|+.+..+..+..++. +... .++.+.+.+..++
T Consensus 239 p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 318 (406)
T PRK15402 239 PVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSL 318 (406)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 444 46789998888877665555556667789999999999999988887776654 2222 3456677788899
Q ss_pred HHhhhhhhhhhhhHHH-HhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 013253 134 GGIATSLLFSAFESWL-VAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS 194 (447)
Q Consensus 134 ~G~~~~~~~~~~~~~~-i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~ 194 (447)
.|++.+...+...... ..+.+++++..+. .+.... ++..+++.+++.+.+..+
T Consensus 319 ~g~g~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~----~~~~~g~~~~~~l~~~~~ 372 (406)
T PRK15402 319 YAFGIGLANAGLYRLTLFSSDVSKGTVSAA----MGMLSM----LIFTVGIELSKHAYLGGG 372 (406)
T ss_pred HHHHHHHHhhhHHHHHhhhccccccHHHHH----HHHHHH----HHHHHHHHHHHhcccCCc
Confidence 9999888766543311 1222445554442 232333 444455555555554333
No 178
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.82 E-value=3.8e-07 Score=87.17 Aligned_cols=149 Identities=17% Similarity=0.206 Sum_probs=94.6
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHH-HHHHHHHHHH-HHh-----cCchhHHHHH
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACV-TYCLTYILSC-ITK-----HSPQYKILMI 129 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~-~~~~~~~i~~-l~~-----~~~~~~~l~~ 129 (447)
..+.|...+++|.++.+.+.+.....+.+.++.+..|+++||+|||+.+. .+.+..+++. ... ..++.+.+.+
T Consensus 242 ~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~ 321 (402)
T TIGR00897 242 AVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALI 321 (402)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHH
Confidence 44566667889999998887777666777788889999999999988764 2333333321 111 2356777778
Q ss_pred HHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHH
Q 013253 130 GRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA 209 (447)
Q Consensus 130 ~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~ 209 (447)
..++.|++.+...+.. . .+.|..++ ++.. ..+ ..+....++..++|.+++.+.+.. ++...+++.+++.+
T Consensus 322 ~~~~~G~~~~~~~~~~-~-~~~~~~~~-~~g~----~~g-~~~~~~~lg~~~gp~i~g~l~~~~--g~~~~~~~~a~~~~ 391 (402)
T TIGR00897 322 IAIALGIFLAGYVPLA-A-VFPTLAPK-HKGA----AMS-VLNLSAGLSAFLAPAIAVLFIGFF--GAIGVVWIFAALYV 391 (402)
T ss_pred HHHHHHHHHHHHHHHH-H-HHHhhCcc-hhHH----HHH-HHHHHHHHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHH
Confidence 8889998887765432 3 55555332 2222 122 233345567777778888777654 55677777666655
Q ss_pred HHHHHH
Q 013253 210 IGMVII 215 (447)
Q Consensus 210 ~~~~~~ 215 (447)
+.....
T Consensus 392 i~~~~~ 397 (402)
T TIGR00897 392 VSAFLT 397 (402)
T ss_pred HHHHHH
Confidence 544443
No 179
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.81 E-value=6.2e-07 Score=85.36 Aligned_cols=139 Identities=12% Similarity=0.087 Sum_probs=88.0
Q ss_pred hHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHH-HHHH-HHhcCchhHHHHHHHHHHHhhh
Q 013253 61 YYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTY-ILSC-ITKHSPQYKILMIGRILGGIAT 138 (447)
Q Consensus 61 ~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~-~i~~-l~~~~~~~~~l~~~r~l~G~~~ 138 (447)
|.+.+++|.++.+.+.+.....+.+.+++.+.|++.||.+ |+.+..+..+. .... +....++.+.+.+..++.|++.
T Consensus 241 p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~ 319 (394)
T PRK10213 241 PVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTF 319 (394)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4556788999988888777666666777778999999964 44444444443 3334 3345667788888899999999
Q ss_pred hhhhhhhhHHHHhhhcc--cchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHH
Q 013253 139 SLLFSAFESWLVAEHNK--RGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIG 211 (447)
Q Consensus 139 ~~~~~~~~~~~i~~~~~--r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~ 211 (447)
+...+...+ ++.+..+ +++..+. . .....+|..+++.+++.+.+. ++++..+...+.+.++.
T Consensus 320 ~~~~~~~~~-~~~~~~~~~~~~~~~~----~----~~~~~lg~~~G~~l~G~l~~~--~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 320 ALVPVGWST-WITRSLADQAEKAGSI----Q----VAVIQLANTCGAAIGGYALDN--IGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HhhhHHHHH-HHHHHCcccHHHHHHH----H----HHHHHHHHHHHHHHHHHHHhc--cChhhHHHHHHHHHHHH
Confidence 888877755 5555422 2222221 1 123346667777777777754 34456666655544433
No 180
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.81 E-value=1e-07 Score=92.53 Aligned_cols=150 Identities=11% Similarity=-0.003 Sum_probs=98.2
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhcc--CchhHHHHH--HHHHHHHH-HHhcCchhHHHHHHH
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ--GRKRACVTY--CLTYILSC-ITKHSPQYKILMIGR 131 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~--Grr~~l~~~--~~~~~i~~-l~~~~~~~~~l~~~r 131 (447)
..++|...+++|.+..+.+.+.+...+...+++++.|+++||. ++|+....+ .+..+++. +....++++.+++.+
T Consensus 261 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~ 340 (455)
T TIGR00892 261 IIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYC 340 (455)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 3455666778899999999888887777778888899999984 344444333 33333443 446678899999999
Q ss_pred HHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHH
Q 013253 132 ILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIG 211 (447)
Q Consensus 132 ~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~ 211 (447)
++.|++.+...+...+ ++.|..++..... ..+ .......+|..++|.+++.+.+..+ +|+..|+..+++.++.
T Consensus 341 ~~~G~~~g~~~~~~~~-~~~~~~~~~~~g~----~~g-~~~~~~~lg~~igp~i~G~l~~~~g-~~~~~f~~~~~~~li~ 413 (455)
T TIGR00892 341 IFFGLSFGSVGALLFE-VLMDLVGAQRFSS----AVG-LVTIVECCAVLIGPPLAGRLVDATK-NYKYIFYASGSIVVSA 413 (455)
T ss_pred HHHHHHhchHHHHHHH-HHHHHhhHHHHhh----HHh-HHHHHHHHHHHccccceeeeehhcC-CcchHHHHhhHHHHHH
Confidence 9999998888777655 6666532222222 112 2333455777888888887776443 3566677766655544
Q ss_pred HH
Q 013253 212 MV 213 (447)
Q Consensus 212 ~~ 213 (447)
.+
T Consensus 414 ~~ 415 (455)
T TIGR00892 414 GL 415 (455)
T ss_pred HH
Confidence 43
No 181
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.81 E-value=7e-07 Score=84.40 Aligned_cols=168 Identities=16% Similarity=0.214 Sum_probs=108.2
Q ss_pred HHhhhhhcchhHhHhHhhcC-CCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcC-chhH
Q 013253 49 MMAGDWLQGPYVYYLYSTYG-FGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS-PQYK 125 (447)
Q Consensus 49 ~~~~~~~~~~~l~~i~~~~g-~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~-~~~~ 125 (447)
..........+.+...+|.| .+....+.+.+.+.+.-.+.-...+++..|+|.|+++.++.+..++=. +.+.. ++.+
T Consensus 219 ~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~ 298 (400)
T PF03825_consen 219 IGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWP 298 (400)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 33334443444455567777 677777766666655555555568999999999999999999998854 55554 5544
Q ss_pred HHH----HHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccc----Cc
Q 013253 126 ILM----IGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSL----GP 197 (447)
Q Consensus 126 ~l~----~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~----~~ 197 (447)
... ....+.|+..+....+... ++.+..+++.+.+ ..+....+..++|..++..++|++.++.+- +|
T Consensus 299 ~~~~~~~l~q~lhG~tf~~~~~a~~~-yi~~~~p~~~~at----~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~ 373 (400)
T PF03825_consen 299 FIVALQLLGQLLHGLTFGLFHAASVR-YIDRIAPPELRAT----AQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDW 373 (400)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHhCCccchHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhH
Confidence 433 3345799999999888866 8888755555544 333344455667888888888888876553 33
Q ss_pred cchhhhHHHHHHHHHHHHHHhccc
Q 013253 198 VAPFDAAACFLAIGMVIILSSWTE 221 (447)
Q Consensus 198 ~~~f~~~~~~~~~~~~~~~~~~~~ 221 (447)
...+.+.+++.++..++.....+|
T Consensus 374 ~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 374 SAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Confidence 344445555444444444434443
No 182
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.81 E-value=4.9e-07 Score=86.13 Aligned_cols=80 Identities=19% Similarity=0.174 Sum_probs=56.6
Q ss_pred hHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHhhhhhh
Q 013253 63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLL 141 (447)
Q Consensus 63 i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~ 141 (447)
..+++|.++.+.+...........++.++.|++.||+|||+.+..+..+..++. +..+.++.+.....-.+.+.+.+..
T Consensus 230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 309 (392)
T PRK10473 230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVG 309 (392)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789998888877777777677778889999999999999999988887765 4455454444444444444444443
Q ss_pred h
Q 013253 142 F 142 (447)
Q Consensus 142 ~ 142 (447)
.
T Consensus 310 ~ 310 (392)
T PRK10473 310 F 310 (392)
T ss_pred h
Confidence 3
No 183
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.78 E-value=3.6e-07 Score=89.59 Aligned_cols=159 Identities=15% Similarity=0.097 Sum_probs=90.7
Q ss_pred hHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhc---CchhH-HHHHHHHH
Q 013253 59 YVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH---SPQYK-ILMIGRIL 133 (447)
Q Consensus 59 ~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~---~~~~~-~l~~~r~l 133 (447)
+.|.+.++.|.+..+.+.......+...++.++.|+++||+|||+.++.+..+.+++. +.+. .+..+ ......++
T Consensus 293 ~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~ 372 (479)
T PRK10077 293 YAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLF 372 (479)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 4467778889887666555444445566777789999999999999999988887764 3222 12111 22223344
Q ss_pred HHhhhhhhh-hhhhHHHHhhhc---ccchhhhHHHHHHHHHHHHHHHHHHHHhhhhh--hhhhcccccCccchhhhHHHH
Q 013253 134 GGIATSLLF-SAFESWLVAEHN---KRGFEQQWLSITFSKAIFLGNGLVAILSGLFG--NLLVDSFSLGPVAPFDAAACF 207 (447)
Q Consensus 134 ~G~~~~~~~-~~~~~~~i~~~~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~--~~l~~~~~~~~~~~f~~~~~~ 207 (447)
.+.+.+... +.. ..+++|.- +|+...+.. .....++..+++.+.|.+. +++.+ .++|+..|+..+++
T Consensus 373 ~~~~~~~~~~~~~-~~~~~e~~p~~~r~~~~g~~----~~~~~~g~~~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~~~ 445 (479)
T PRK10077 373 YVAAFAMSWGPVC-WVLLSEIFPNAIRGKALAIA----VAAQWIANYFVSWTFPMMDKNSWLVA--HFHNGFSYWIYGCM 445 (479)
T ss_pred HHHHHhccccchh-HHHhHhhCChhHHHHHHHHH----HHHHHHHHHHHHHHhHHHHhccchhh--hccCccHHHHHHHH
Confidence 444443322 333 33677763 344443322 2233344555555555544 34443 34556667776666
Q ss_pred HHHHHHHHHHhccccCC
Q 013253 208 LAIGMVIILSSWTENYG 224 (447)
Q Consensus 208 ~~~~~~~~~~~~~~~~~ 224 (447)
.++..+......||+++
T Consensus 446 ~~~~~~~~~~~~~e~~~ 462 (479)
T PRK10077 446 GVLAALFMWKFVPETKG 462 (479)
T ss_pred HHHHHHHHHhccccCCC
Confidence 66665555545566544
No 184
>PRK09848 glucuronide transporter; Provisional
Probab=98.78 E-value=1.8e-07 Score=90.72 Aligned_cols=118 Identities=8% Similarity=0.013 Sum_probs=73.1
Q ss_pred hhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcC--chhHHHHHHHHHHHhhhhhh
Q 013253 65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS--PQYKILMIGRILGGIATSLL 141 (447)
Q Consensus 65 ~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~--~~~~~l~~~r~l~G~~~~~~ 141 (447)
+.+|.++...+.......+...+..++++++.||+|+|+.+..+.++.+++. +..+. ++++.+.+..++.|+|.+..
T Consensus 257 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~ 336 (448)
T PRK09848 257 YVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVT 336 (448)
T ss_pred eecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence 4466554433333333344455667789999999999999999988887765 33443 36677777788899999998
Q ss_pred hhhhhHHHHhhhcc------cchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 013253 142 FSAFESWLVAEHNK------RGFEQQWLSITFSKAIFLGNGLVAILSG 183 (447)
Q Consensus 142 ~~~~~~~~i~~~~~------r~~~~~~~~~~~~~~~~~g~~ig~~~~~ 183 (447)
.+...+ +.+|..+ ..+..+......+....+|..+|+.+.+
T Consensus 337 ~~~~~a-l~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g 383 (448)
T PRK09848 337 MTVMWA-LEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPA 383 (448)
T ss_pred HHHHHH-HHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 887755 6555411 1122333333444444445555444433
No 185
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.78 E-value=6.8e-07 Score=85.42 Aligned_cols=143 Identities=15% Similarity=0.252 Sum_probs=83.7
Q ss_pred HhHhhcCCCCcchhHHHHH-HHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH----HHhcC-chhHHHHHHHHH--
Q 013253 62 YLYSTYGFGKGEIGQLFIA-GFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC----ITKHS-PQYKILMIGRIL-- 133 (447)
Q Consensus 62 ~i~~~~g~s~~~~g~~~~~-~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~----l~~~~-~~~~~l~~~r~l-- 133 (447)
.+.+++|.++.+++.+... +.....++.+++|++.||+|||+.+..+..+..+.. ..++. ++.+.+.+.-++
T Consensus 235 ~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 314 (402)
T PRK11902 235 FLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIEN 314 (402)
T ss_pred HHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 4557789999999987654 333455666789999999999998877776655432 12343 455655555444
Q ss_pred --HHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHH
Q 013253 134 --GGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIG 211 (447)
Q Consensus 134 --~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~ 211 (447)
.|++.+...+.... ++.+..+ ++..+ ..+.. ..++...++.+++.+.+.. +|+..|...+.+.++.
T Consensus 315 ~~~g~~~~~~~~~~~~-~~~~~~~-~~~~~----~~~~~----~~l~~~~~~~~~G~l~~~~--G~~~~f~~~~~~~~~~ 382 (402)
T PRK11902 315 LCGGMGTAAFVALLMA-LCNRSFS-ATQYA----LLSAL----ASVGRVYVGPTSGYLVEAY--GWPGFYLMTVVIALPG 382 (402)
T ss_pred HHHHHHHHHHHHHHHH-hcCCCCc-HHHHH----HHHHH----HHHHHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHH
Confidence 44444444444433 4444322 11111 11111 2344444455677777654 5567777777777666
Q ss_pred HHHHH
Q 013253 212 MVIIL 216 (447)
Q Consensus 212 ~~~~~ 216 (447)
.+...
T Consensus 383 ~~~~~ 387 (402)
T PRK11902 383 LALLW 387 (402)
T ss_pred HHHHH
Confidence 55543
No 186
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.77 E-value=3e-07 Score=90.11 Aligned_cols=159 Identities=11% Similarity=0.104 Sum_probs=93.0
Q ss_pred hcchh-HHHHHHHHHhhhhhhhhhhhhcccccccccCCCCch---HHHHHHHHHHHHHHHHHHHHhhc-CCCcchhHHHH
Q 013253 244 ASDEK-IALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHG---FIFATFMLASMLGSSLASRLMAR-SPPRVESYMQI 318 (447)
Q Consensus 244 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~~~l~~ 318 (447)
+++|+ ++.......+...+.+. ...+++.|+++.+|.+.. ..............+++|+++|| +|||+. +..
T Consensus 17 ~~~p~~~~~~~~~~~~~~~~~y~-~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~--~~~ 93 (500)
T PRK09584 17 FKQPKAFYLIFSIELWERFGYYG-LQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRV--IML 93 (500)
T ss_pred hcCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH--HHH
Confidence 45565 55444444444444444 677899999887887662 33333333334445689999999 599883 555
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhh--hccccchhhhh-
Q 013253 319 VFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA--RSTIMNFFRIP- 395 (447)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~- 395 (447)
+..+..++.......... .+...+...+.+++.+...|...++..|.+|++. |..+.++.++.
T Consensus 94 g~~~~~ig~~l~~~~~~~--------------~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~ 159 (500)
T PRK09584 94 GAIVLAIGYALVAWSGHD--------------AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSI 159 (500)
T ss_pred HHHHHHHHHHHHHHhccc--------------HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHH
Confidence 555544443333221111 0234556677888888888888999999998654 44566654443
Q ss_pred -----hhHHHHHHHHhhcccchHHHHHHHHH
Q 013253 396 -----LNIFVCVVLYNVDAFPITVMFGMCSI 421 (447)
Q Consensus 396 -----~~~~~~~~l~~~~~~~~~~~~~~~~~ 421 (447)
.++.+++++.+.. ++...+....+
T Consensus 160 ~iG~~~gp~i~g~l~~~~--g~~~~F~i~~i 188 (500)
T PRK09584 160 NIGSFFSMLATPWLAAKY--GWSVAFALSVV 188 (500)
T ss_pred HHHHHHHHHHHHHHHHhh--CHHHHHHHHHH
Confidence 2334455555543 45555554443
No 187
>TIGR00895 2A0115 benzoate transport.
Probab=98.77 E-value=9.1e-08 Score=91.17 Aligned_cols=111 Identities=19% Similarity=0.237 Sum_probs=79.0
Q ss_pred hhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 013253 267 VFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVK 343 (447)
Q Consensus 267 ~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (447)
...+.|.+.+ .++.+. +...+...++..++.++.|+++||+|||+. +..+..+..+...........
T Consensus 36 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~--~~~~~~~~~~~~~~~~~~~~~------- 105 (398)
T TIGR00895 36 MGFAAPAISA-EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRV--LLWSILLFSVFTLLCALATNV------- 105 (398)
T ss_pred HHhhHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHccch-------
Confidence 3445555543 355554 667777788899999999999999998873 444444444443332222111
Q ss_pred CCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 344 SGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 344 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+...+..++.|++.+...+...+++.|.+|+++|+++.++.+..
T Consensus 106 --------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 149 (398)
T TIGR00895 106 --------TQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCG 149 (398)
T ss_pred --------HHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhH
Confidence 35567788889999988999999999999999999999887664
No 188
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.77 E-value=3.4e-07 Score=89.48 Aligned_cols=159 Identities=11% Similarity=0.028 Sum_probs=92.6
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHh---c--Cc------hh
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK---H--SP------QY 124 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~---~--~~------~~ 124 (447)
..+.|.+.+++|.+..+.+.......+.+.++.++.|+++||+|||+.+..+..+.+++. +.. . .+ +.
T Consensus 304 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (481)
T TIGR00879 304 MYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGN 383 (481)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhH
Confidence 344566778899998777777666667677888889999999999999998877776654 323 1 12 22
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhH
Q 013253 125 KILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAA 204 (447)
Q Consensus 125 ~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~ 204 (447)
..+....+..+.......+.. ..++.|..++..+... .+ .......+|..+++.+.+.+.+..+ |+..|++.
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~----~~-~~~~~~~lg~~i~~~~~~~~~~~~~--~~~~f~~~ 455 (481)
T TIGR00879 384 VAIVFILLFIAFFAMGWGPVP-WVIVSEIFPLSLRPKG----IS-IAVAANWLANFIVGFLFPTMLESIG--VGGVFIFF 455 (481)
T ss_pred HHHHHHHHHHHHHHccccCee-hhhhhccCChHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHhcC--ccceehhH
Confidence 233333333222222222333 3255666332222221 11 2222344666777777777665544 45667776
Q ss_pred HHHHHHHHHHHHHhccccC
Q 013253 205 ACFLAIGMVIILSSWTENY 223 (447)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~ 223 (447)
+.+.++..+......||++
T Consensus 456 ~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 456 GGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHHHHHHHheecccCC
Confidence 6666666555554556544
No 189
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.76 E-value=9.7e-07 Score=86.13 Aligned_cols=145 Identities=20% Similarity=0.220 Sum_probs=99.2
Q ss_pred hhHhHhH-hhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Q 013253 58 PYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGG 135 (447)
Q Consensus 58 ~~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G 135 (447)
..+|.+. +++|.++...|.+.+...+.+.+++...+++.+|+++++.+..+.+.++++. ..+++++.+..++.-++.|
T Consensus 239 aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G 318 (524)
T PF05977_consen 239 ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAG 318 (524)
T ss_pred HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3455554 6789999999998887777677777788999999999999999988888876 6699999999999999999
Q ss_pred hhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHH
Q 013253 136 IATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGM 212 (447)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~ 212 (447)
++.........+ .+.+. +.|++..+.... ....+..+|.. +.|.+.+..+ .+..+.+.++..++..
T Consensus 319 ~~~~~~~~~~~t-~~Q~~~P~~~~GRv~si~~~----~~~g~~~lGsl----l~G~la~~~g--~~~al~~a~~~lll~~ 387 (524)
T PF05977_consen 319 AAWIIANSSLNT-LVQLSVPDWVRGRVFSIYQM----VFFGGMPLGSL----LWGFLADHFG--VRTALLIAGAALLLSA 387 (524)
T ss_pred HHHHHHHHHHHH-HHHHhCCHHHHhHHHHHHHH----HHHHHHHHHHH----HHHHHHHHhC--HHHHHHHHHHHHHHHH
Confidence 998887776644 54444 445665553333 33334444444 4444443333 3445555554444433
Q ss_pred H
Q 013253 213 V 213 (447)
Q Consensus 213 ~ 213 (447)
+
T Consensus 388 ~ 388 (524)
T PF05977_consen 388 L 388 (524)
T ss_pred H
Confidence 3
No 190
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.76 E-value=6.6e-08 Score=91.96 Aligned_cols=104 Identities=18% Similarity=0.304 Sum_probs=77.1
Q ss_pred ccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccch
Q 013253 275 SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSG 351 (447)
Q Consensus 275 ~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (447)
.++.++.+. +...+...++..++.++.|++.||+|||+. +..+..+..+.........+.
T Consensus 20 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~--~~~~~~~~~~~~~~~~~~~~~--------------- 82 (399)
T TIGR00893 20 LQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKT--LAVFIVIWGVFTGLQAFAGAY--------------- 82 (399)
T ss_pred HHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCccee--eHHHHHHHHHHHHHHHHHcCH---------------
Confidence 344455544 778888889999999999999999999884 444444444443333222211
Q ss_pred hhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 352 SLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 352 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+...+..++.|++.+...+....++.|.+|+++|++.+++.+..
T Consensus 83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 126 (399)
T TIGR00893 83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSA 126 (399)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 36677788889999988999999999999999999998887664
No 191
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.76 E-value=2.1e-07 Score=91.33 Aligned_cols=133 Identities=11% Similarity=0.022 Sum_probs=87.2
Q ss_pred hhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 013253 267 VFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVK 343 (447)
Q Consensus 267 ~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (447)
+..-.|.+.++ ++.+. ++..+.+.++.....+..|+++||+|||+. +..+..+..+.........+.
T Consensus 25 v~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~--l~~~~~~~~~~~~~~~~a~~~------- 94 (495)
T PRK14995 25 LHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRL--LMLGGTLFGLASLAAAFSPTA------- 94 (495)
T ss_pred HHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHHHHHHHcCCH-------
Confidence 45556766543 45433 677777888888899999999999999983 555555544444443332222
Q ss_pred CCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcC-Chhhhccccchhhhh------hhHHHHHHHHhhcccchHHHH
Q 013253 344 SGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYI-PEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMF 416 (447)
Q Consensus 344 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~ 416 (447)
+..++.-.+.|++.+...|.....+.+.+ |+++|++++|+.... .++.+++.+.+..+ +.+.+
T Consensus 95 --------~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g--wr~~f 164 (495)
T PRK14995 95 --------SWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY--WGSVF 164 (495)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHHHH
Confidence 35667778889988888887777776654 788899998886664 33455555555533 43444
Q ss_pred HHH
Q 013253 417 GMC 419 (447)
Q Consensus 417 ~~~ 419 (447)
...
T Consensus 165 ~i~ 167 (495)
T PRK14995 165 LIN 167 (495)
T ss_pred HHH
Confidence 443
No 192
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.76 E-value=3e-07 Score=88.04 Aligned_cols=129 Identities=10% Similarity=0.048 Sum_probs=81.9
Q ss_pred ccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhh
Q 013253 277 NDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSL 353 (447)
Q Consensus 277 ~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (447)
+.++.+. +...+.+.++..+++++.|+++||+|||+. +..+..+..++.......... +.
T Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~--l~~~~~~~~~~~~~~~~a~~~---------------~~ 106 (413)
T PRK15403 44 RDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPV--LITGALIFTLACAATLFTTSM---------------TQ 106 (413)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHH--HHHHHHHHHHHHHHHHHcCCH---------------HH
Confidence 4455555 556677778899999999999999999983 444444444443333222111 35
Q ss_pred HHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh------hhHHHHHHHHhhcccchHHHHHHHHHHHH
Q 013253 354 QLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVMFGMCSIFLL 424 (447)
Q Consensus 354 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 424 (447)
.++.-++.|++.+...+....+..|.+|++++++.+++.+.. .++.+++.+.+. .++...+...++..+
T Consensus 107 l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~--~gw~~~f~~~~~~~~ 181 (413)
T PRK15403 107 FLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF--VHWKVLFAIIAVMGL 181 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHH
Confidence 566677778877765677778899999999988887765553 233445544443 344444544444333
No 193
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=98.76 E-value=2.4e-05 Score=73.92 Aligned_cols=145 Identities=17% Similarity=0.055 Sum_probs=82.1
Q ss_pred HHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHH
Q 013253 240 AVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYM 316 (447)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l 316 (447)
++..++++ .+...+...+.......+ ...+..|+... |.+. |..-+...+.++.++....++.+|+|..|. -
T Consensus 252 w~~Y~~q~-vflas~alalLY~TVLsf-~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~--G 326 (432)
T PF06963_consen 252 WRTYFRQP-VFLASFALALLYFTVLSF-GGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRA--G 326 (432)
T ss_pred HHHHHhCH-HHHHHHHHHHHHHHHhcC-cHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh--H
Confidence 33444444 333344444444333332 33334455443 5555 555567778899999999999999997774 3
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhh
Q 013253 317 QIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRI 394 (447)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 394 (447)
..+......++........... .+........++.+..+--+|.=...-...-+++|.+|+++|++..|.-+.
T Consensus 327 ~~~l~~q~~~L~~~v~~~~~~~-----~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~s 399 (432)
T PF06963_consen 327 LWSLWWQWVCLALCVVSFWAPG-----SPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNS 399 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-----CCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHH
Confidence 3333333333222221111100 010122234555566666666655567788899999999999999887544
No 194
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.74 E-value=4.2e-07 Score=84.61 Aligned_cols=146 Identities=11% Similarity=0.099 Sum_probs=105.1
Q ss_pred CCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHH
Q 013253 70 GKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESW 148 (447)
Q Consensus 70 s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 148 (447)
++..+|.+.+.+...-.+.-.+..++.+|+|.|+.++++..+..+=. .+++++|.+.+.+.+.+.|+-.+....+...
T Consensus 257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fk- 335 (412)
T PF01306_consen 257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFK- 335 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34456677777666666655578999999999999999999988865 7799999999999999999999999888877
Q ss_pred HHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHHHHhcccc
Q 013253 149 LVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTEN 222 (447)
Q Consensus 149 ~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 222 (447)
|+++..+++.. ...+..+...+..+|..+.+.++|.+.|+.|. +..|++.+.+.+...++..+.++++
T Consensus 336 YI~~~fd~rls----At~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~--~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 336 YITAHFDKRLS----ATLYLVGFQFAKQIGIIILSPLAGYLYDRIGF--QHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHS-GGGH----HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHhCCHhHH----HHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCc--HHHHHHHHHHHHHHHHHheeeecCC
Confidence 88877433332 22455556667778888888899998876554 5667777776666555555455443
No 195
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.73 E-value=8.4e-07 Score=83.30 Aligned_cols=131 Identities=13% Similarity=0.087 Sum_probs=83.1
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhcc-CchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHH
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILG 134 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~-Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~ 134 (447)
..++|...++.|.|..+.+...+...+...+++++.|++.||+ +||+.+..+..+.+++. ...+.++..... .-++.
T Consensus 217 ~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 295 (355)
T TIGR00896 217 IGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVL 295 (355)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHH
Confidence 4556777788899999999888887787888888999999999 56667777777776664 344444333222 45678
Q ss_pred HhhhhhhhhhhhHHHHhhh-cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 013253 135 GIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS 194 (447)
Q Consensus 135 G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~ 194 (447)
|++.+...+...+ .+.+. .+++..... .+..... ..++..++|.+.+.+.+..+
T Consensus 296 g~~~g~~~~~~~~-~~~~~~~~~~~~g~~----~~~~~~~-~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 296 GLGQGGAFPLALT-LIGLRSRQAAQAAAL----SAMAQSI-GYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHhhhhHhHHHHH-HHHHhccCHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 9999888887645 44332 222222221 1111222 22455667777777766543
No 196
>PRK11043 putative transporter; Provisional
Probab=98.72 E-value=2.8e-07 Score=88.07 Aligned_cols=109 Identities=12% Similarity=0.017 Sum_probs=73.1
Q ss_pred hhccccc--ccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 013253 268 FLWTPAL--SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNV 342 (447)
Q Consensus 268 ~~~~~~~--~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (447)
..+.|.+ .++.++.+. +...+...++..++.++.|+++||+|||+. +..+..+..+...........
T Consensus 23 ~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~--~~~~~~~~~~~~~~~~~~~~~------ 94 (401)
T PRK11043 23 DMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPV--LLAGLSLFALGSLGMLWVESA------ 94 (401)
T ss_pred HHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHH--HHHHHHHHHHHHHHHHHhcCH------
Confidence 4455654 344556555 677778888999999999999999999983 444444444333332222111
Q ss_pred CCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhh
Q 013253 343 KSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFR 393 (447)
Q Consensus 343 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~ 393 (447)
+...+..++.|++.+...+...++..|.+|++++++..+...
T Consensus 95 ---------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (401)
T PRK11043 95 ---------AQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIM 136 (401)
T ss_pred ---------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 345566677777777677777889999999998877766544
No 197
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.72 E-value=1.5e-06 Score=82.67 Aligned_cols=140 Identities=12% Similarity=-0.072 Sum_probs=86.1
Q ss_pred hHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHhhhhhh
Q 013253 63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLL 141 (447)
Q Consensus 63 i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~ 141 (447)
..+.+|.++.+.|.+.....+...++++..+++.||.++|+.+..+... ++.. +..+.++++...+..++.|++.+..
T Consensus 232 ~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~ 310 (393)
T PRK11195 232 APVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLLMALQHSLLPAYPLLILIGALGGFF 310 (393)
T ss_pred HHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Confidence 3467899999999888877776777788899999999999988877533 3333 4456677777777888999998887
Q ss_pred hhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHH
Q 013253 142 FSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA 209 (447)
Q Consensus 142 ~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~ 209 (447)
.+...+ .+.|..++....+......+....++..++.. +.+.+ ...+-++...+...+.+..
T Consensus 311 ~~~~~~-~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~ 372 (393)
T PRK11195 311 VVPMNA-LLQHRGHVLVGAGHSIAVQNFNENLAMLLMLG----LYSLL-VKLGVPVVAVIVGFGLLVA 372 (393)
T ss_pred hhhHHH-HHHhhCcccccchhHHHHHhHHHHHHHHHHHH----HHHHH-HHcCCCHHHHHHHHHHHHH
Confidence 776655 55554222111121222233333444444443 33322 2245555555555554433
No 198
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.70 E-value=2.2e-07 Score=87.77 Aligned_cols=109 Identities=18% Similarity=0.309 Sum_probs=79.8
Q ss_pred hcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 013253 269 LWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSG 345 (447)
Q Consensus 269 ~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (447)
...|.+ ++.++.+. +...+...++..++.++.|+++||+|||+. +..+..+..+...+.......
T Consensus 16 ~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~--~~~~~~~~~~~~~~~~~~~~~--------- 83 (379)
T TIGR00881 16 LAMPYL-VEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVF--LPIGLILCAIVNLFFGFSTSL--------- 83 (379)
T ss_pred hhhHHH-HHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeeh--hHHHHHHHHHHHHHHHHhhhH---------
Confidence 344543 34445544 777788889999999999999999999983 555554444444443332222
Q ss_pred ccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 346 GISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 346 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+..++..++.|++.+...+...+++.|.+|+++|+++.++.+..
T Consensus 84 ------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 127 (379)
T TIGR00881 84 ------WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCS 127 (379)
T ss_pred ------HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhcc
Confidence 36677788889999988999999999999999999998887664
No 199
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.70 E-value=3.4e-07 Score=87.24 Aligned_cols=110 Identities=10% Similarity=-0.063 Sum_probs=74.5
Q ss_pred ccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcc
Q 013253 271 TPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGI 347 (447)
Q Consensus 271 ~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (447)
.+.+.+++++.+. +...+...++..+.++..|++.||+|.|+. +..+..+..+......+.....
T Consensus 57 ~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v--~~~~~ll~~i~~~~~~~a~~~~---------- 124 (462)
T PRK15034 57 TVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRW--TVFSTAILIIPCVWLGIAVQNP---------- 124 (462)
T ss_pred HHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH--HHHHHHHHHHHHHHHHHHHccc----------
Confidence 3334344577776 566677778888999999999999999983 4444444443333332211100
Q ss_pred ccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhh
Q 013253 348 SFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFR 393 (447)
Q Consensus 348 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~ 393 (447)
....+..++..++.|++ +..++.....+++.+|+++||++.|+..
T Consensus 125 ~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~ 169 (462)
T PRK15034 125 NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGING 169 (462)
T ss_pred CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHH
Confidence 00123566777777876 6678889999999999999999999874
No 200
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.69 E-value=2.4e-07 Score=90.93 Aligned_cols=111 Identities=18% Similarity=0.157 Sum_probs=80.2
Q ss_pred hhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 013253 267 VFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVK 343 (447)
Q Consensus 267 ~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (447)
.....|.+.++ ++.+. +...+...++..++.++.|++.||+|||+. +..+..+..+..........
T Consensus 21 ~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~--~~~~~~~~~~~~~~~~~~~~-------- 89 (485)
T TIGR00711 21 VNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRL--FLISTFAFTLGSLLCGVAPN-------- 89 (485)
T ss_pred HHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHH--HHHHHHHHHHHHHHHhCcCC--------
Confidence 34456655543 44443 777888889999999999999999999883 44444444444433222211
Q ss_pred CCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 344 SGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 344 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
.+...+..++.|++.+...+...+++.|.+|+++|+++.++....
T Consensus 90 -------~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 134 (485)
T TIGR00711 90 -------LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLT 134 (485)
T ss_pred -------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 135677788889998888899999999999999999998887654
No 201
>PRK09669 putative symporter YagG; Provisional
Probab=98.69 E-value=4.3e-07 Score=88.03 Aligned_cols=107 Identities=15% Similarity=0.089 Sum_probs=66.6
Q ss_pred HHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHH-HHH-hc-CchhHHHHHHHHHHHhhhhhhhhhhhHHHHhh
Q 013253 76 QLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILS-CIT-KH-SPQYKILMIGRILGGIATSLLFSAFESWLVAE 152 (447)
Q Consensus 76 ~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~-~l~-~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~ 152 (447)
.+.....+...+..+++++++||+|+|+.+..+....++. ... .. .++.+.+++..++.|++.+...+...+ +++|
T Consensus 268 ~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a-m~ad 346 (444)
T PRK09669 268 LFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS-MFSD 346 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHh
Confidence 3444444555566668899999999999999887766543 322 22 457777888889999999998887755 6655
Q ss_pred h------cccchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 013253 153 H------NKRGFEQQWLSITFSKAIFLGNGLVAILSG 183 (447)
Q Consensus 153 ~------~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~ 183 (447)
. +...+..+......+....+|..+|+.+++
T Consensus 347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g 383 (444)
T PRK09669 347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVG 383 (444)
T ss_pred hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 111223333333344444445545544443
No 202
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.68 E-value=3.4e-07 Score=90.20 Aligned_cols=110 Identities=14% Similarity=0.072 Sum_probs=78.2
Q ss_pred hhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 013253 268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS 344 (447)
Q Consensus 268 ~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (447)
....|.+ .+.++.+. +...+...++..++.++.|++.||+|||+. +..+..+..+.........+.
T Consensus 40 ~~~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~--~~~~~~~~~~~~~~~~~~~~~-------- 108 (496)
T PRK03893 40 TLVLTEV-QGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLA--MVISIVLFSVGTLACGFAPGY-------- 108 (496)
T ss_pred HHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH--HHHHHHHHHHHHHHHHHHhHH--------
Confidence 3344544 34456655 666777788899999999999999999883 444444444444433332222
Q ss_pred CccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 345 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+...+..++.|++.+...+....++.|.+|+++|+++.++....
T Consensus 109 -------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 152 (496)
T PRK03893 109 -------WTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISG 152 (496)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 35667778888888888899999999999999999988877654
No 203
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.68 E-value=5.2e-07 Score=88.08 Aligned_cols=145 Identities=14% Similarity=0.040 Sum_probs=81.7
Q ss_pred HhHh-HhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchh-------HHHHHHHHHHHHH-HHhcCchhHHHHHH
Q 013253 60 VYYL-YSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKR-------ACVTYCLTYILSC-ITKHSPQYKILMIG 130 (447)
Q Consensus 60 l~~i-~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~-------~l~~~~~~~~i~~-l~~~~~~~~~l~~~ 130 (447)
+|.. .+++|.+..+.+.+.+...+.+.++.+++|+++||+|||+ .......+.++.. +....++.+...+.
T Consensus 275 ~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 354 (476)
T PLN00028 275 IAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVV 354 (476)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3443 4678999999998877777778888889999999998762 2222222223332 33556666655555
Q ss_pred HHHHHhhhhhhhhhhhHHHHhhhcc--cchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHH
Q 013253 131 RILGGIATSLLFSAFESWLVAEHNK--RGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFL 208 (447)
Q Consensus 131 r~l~G~~~~~~~~~~~~~~i~~~~~--r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~ 208 (447)
-++.+++.+...+...+ ++.+..+ ++.. .+ ....+..+|+.+++.+.+. + ...+|+..|...+++.
T Consensus 355 ~~l~~~~~~~~~~~~~~-~~~~~~~~~~g~~-------~g-~~~~~g~lg~~i~~~l~~~--~-~~~~y~~~f~~~~~~~ 422 (476)
T PLN00028 355 MILFSIFVQAACGATFG-IVPFVSRRSLGVI-------SG-LTGAGGNVGAVLTQLLFFT--G-SSYSTETGISLMGVMI 422 (476)
T ss_pred HHHHHHHHHHhhhhhcc-cCcccChhhchhh-------hh-hhhccccHHHHHHHHHHHh--c-CCccHhhHHHHHHHHH
Confidence 66666665554443322 3444322 2221 22 2233344566555554321 1 1235667777776666
Q ss_pred HHHHHHHH
Q 013253 209 AIGMVIIL 216 (447)
Q Consensus 209 ~~~~~~~~ 216 (447)
+++.+...
T Consensus 423 ~i~~~~~~ 430 (476)
T PLN00028 423 IACTLPVA 430 (476)
T ss_pred HHHHHHHH
Confidence 65544443
No 204
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.67 E-value=6.5e-07 Score=85.37 Aligned_cols=106 Identities=9% Similarity=0.095 Sum_probs=71.8
Q ss_pred ccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcc
Q 013253 271 TPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGI 347 (447)
Q Consensus 271 ~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (447)
.|.+. ++++.+. +...+...++..++.++.|+++||+|||+. +..+.....+...........
T Consensus 31 ~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~--~~~~~~~~~~~~~~~~~~~~~----------- 96 (394)
T PRK11652 31 IADMA-RDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPV--ILVGMSIFILGTLVALFAHSL----------- 96 (394)
T ss_pred HHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHH--HHHHHHHHHHHHHHHHHHccH-----------
Confidence 34443 4455555 667778888999999999999999999883 444444443333332221111
Q ss_pred ccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhh
Q 013253 348 SFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRI 394 (447)
Q Consensus 348 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 394 (447)
+...+..++.|++.+...+....+..|.+++++++++.+..+.
T Consensus 97 ----~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (394)
T PRK11652 97 ----TVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNM 139 (394)
T ss_pred ----HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3556667777887777777788888999998888888776554
No 205
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.67 E-value=1.6e-06 Score=79.47 Aligned_cols=125 Identities=13% Similarity=0.101 Sum_probs=83.7
Q ss_pred hcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHhhhhhhhhh
Q 013253 66 TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSA 144 (447)
Q Consensus 66 ~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~ 144 (447)
++|+++.+.+..++.......++....+++.||+|+||.+..+..+..++. +....++...+ ..-++.|++.+..+|.
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~ 250 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPT 250 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHH
Confidence 368999999988888777777888899999999999999888877776654 33344443322 3555889999999999
Q ss_pred hhHHHHhh-hcc-cchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhh
Q 013253 145 FESWLVAE-HNK-RGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDA 203 (447)
Q Consensus 145 ~~~~~i~~-~~~-r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~ 203 (447)
..+ ...+ ..+ .+...+ ... ...+|..+.|.+.+.+.+..+ .+..|++
T Consensus 251 ~~s-~a~~~~~~~~~~asa--------i~~-~~~~Gg~i~P~l~G~lad~~g--~~~a~~v 299 (310)
T TIGR01272 251 IFS-LALNALGRHTSQGSG--------ILC-LAIVGGAIVPLLQGSLADCLG--IQLAFAL 299 (310)
T ss_pred HHH-HHHhhhhhhhhhhHH--------HHH-HHHhcchHHHHHHHHHHHhcc--chHHHHH
Confidence 766 4443 222 222111 112 233677778887787776544 3455553
No 206
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.66 E-value=2.3e-06 Score=82.62 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=43.7
Q ss_pred chhHhHhH-hhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHH
Q 013253 57 GPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYI 113 (447)
Q Consensus 57 ~~~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~ 113 (447)
...+|... +++|.+..+.+.........+.+.+++.|+++||+|||+.+.....+.+
T Consensus 263 ~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~ 320 (432)
T PRK10406 263 TTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAA 320 (432)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 44556554 5689998888877777677677888889999999999998877665443
No 207
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.62 E-value=8.8e-07 Score=85.40 Aligned_cols=139 Identities=20% Similarity=0.231 Sum_probs=94.3
Q ss_pred HHHHHHhhhhhcchhHhHhHhh-cCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcC-
Q 013253 45 VYSLMMAGDWLQGPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS- 121 (447)
Q Consensus 45 ~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~- 121 (447)
...+..+.........+...++ +|.+ .+.+.......+.+.+..+++++++||+|+|+.+..+..+.+++. +..+.
T Consensus 233 ~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~ 311 (428)
T PF13347_consen 233 AFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG 311 (428)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH
Confidence 3333444444444444444443 4444 566666666777777888899999999999999999999998875 44554
Q ss_pred -chhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh------cccchhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 013253 122 -PQYKILMIGRILGGIATSLLFSAFESWLVAEH------NKRGFEQQWLSITFSKAIFLGNGLVAILSGLF 185 (447)
Q Consensus 122 -~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~------~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l 185 (447)
+|.+.+++.-++.|++.+.......+ +++|. +...++.+......+...-++.+++..+.+.+
T Consensus 312 ~~~~~~~~i~~~l~gi~~~~~~~~~~a-~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 312 PGSPWLVLILFILAGIGYGAFFVIPWA-MLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred hhhHHHHHHHHHHhHhhhccccccccc-ccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 58999999999999999999877655 66654 22234455555556666666666665544433
No 208
>PRK10133 L-fucose transporter; Provisional
Probab=98.62 E-value=2e-06 Score=82.91 Aligned_cols=134 Identities=11% Similarity=0.051 Sum_probs=86.3
Q ss_pred hhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHhhhhhhhh
Q 013253 65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFS 143 (447)
Q Consensus 65 ~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~ 143 (447)
+++|.++.+.+..+........++..+.|++.||+|||+++..+..+..+.. +..+.++.. -+..-.+.|++.+..+|
T Consensus 288 ~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~P 366 (438)
T PRK10133 288 EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQYP 366 (438)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHHH
Confidence 4689999999988888777777888899999999999999988877776654 334444432 24556789999999999
Q ss_pred hhhHHHHhhhc-c-cchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHH
Q 013253 144 AFESWLVAEHN-K-RGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI 210 (447)
Q Consensus 144 ~~~~~~i~~~~-~-r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~ 210 (447)
...+ ...|.. + .+...+.. . ...+|..++|.+.+.+.+..+ +-+..|.+..+..+.
T Consensus 367 ~~~s-~a~~~~~~~~~~as~l~----~-----~~~~g~~~~~~i~G~l~~~~g-~~~~~~~v~~~~~~~ 424 (438)
T PRK10133 367 TIFS-LGIKNLGQDTKYGSSFI----V-----MTIIGGGIVTPVMGFVSDAAG-NIPTAELIPALCFAV 424 (438)
T ss_pred HHHH-HHHcccchhhccchhHH----h-----HHhccchHHHHHHHHHHHhcc-chHHHHHHHHHHHHH
Confidence 9876 544432 2 12222211 1 122344555566666655433 134556554444443
No 209
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.62 E-value=7.6e-07 Score=83.68 Aligned_cols=131 Identities=11% Similarity=0.080 Sum_probs=79.5
Q ss_pred cccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCc
Q 013253 270 WTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGG 346 (447)
Q Consensus 270 ~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (447)
..|.+. ++++.+. |...+...++..++++..|+++||+|||+ +....................
T Consensus 13 ~lp~i~-~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~---~~~~~~~~~~~~~~~~~~~~~---------- 78 (368)
T TIGR00903 13 VLSLVA-EDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRW---FLFGSLATFAAAAGRLLDPFN---------- 78 (368)
T ss_pred hHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH---HHHHHHHHHHHHHHHHHHhcc----------
Confidence 444443 3455554 67777788899999999999999999776 333322222221111111011
Q ss_pred cccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhhh--h----HHHHHHHHhhcccchHHHHHHHH
Q 013253 347 ISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPL--N----IFVCVVLYNVDAFPITVMFGMCS 420 (447)
Q Consensus 347 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~--~----~~~~~~l~~~~~~~~~~~~~~~~ 420 (447)
.+..++.-++.|++.+. .+.......|.+|+++|++++++.+... + ..++..+.+. .++...+...+
T Consensus 79 ----~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~--~gWr~~f~~~~ 151 (368)
T TIGR00903 79 ----YEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA--GGLQLLIIPIA 151 (368)
T ss_pred ----HHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHH
Confidence 13567777888888875 4555666789999999999999877642 2 2333444443 34544554433
Q ss_pred H
Q 013253 421 I 421 (447)
Q Consensus 421 ~ 421 (447)
+
T Consensus 152 ~ 152 (368)
T TIGR00903 152 A 152 (368)
T ss_pred H
Confidence 3
No 210
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.61 E-value=1.8e-08 Score=92.64 Aligned_cols=97 Identities=14% Similarity=0.236 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHh
Q 013253 284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA 363 (447)
Q Consensus 284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 363 (447)
|++.....+..++.+++.|++.||+.|++. +.++..+-.++.+...+.... |.+.+.-.+.|+
T Consensus 71 Gll~~vf~v~~~i~sPl~gyLadryNR~~v--~~vG~~iW~~Av~~~~fs~~F---------------wq~~l~R~~vGi 133 (493)
T KOG1330|consen 71 GLLQTVFIVVFMIASPLFGYLADRYNRKRV--IAVGIFIWTLAVFASGFSNHF---------------WQVLLCRGFVGI 133 (493)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCcceE--EeeHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHhcc
Confidence 888889999999999999999999999883 666666555555554444333 678888899999
Q ss_pred hhccchhHHHHHHhhcCChhhhccccchhhhhhh
Q 013253 364 CVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLN 397 (447)
Q Consensus 364 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 397 (447)
|.+...|+.+++++|.+|++.|+++++++++..+
T Consensus 134 GeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ip 167 (493)
T KOG1330|consen 134 GEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIP 167 (493)
T ss_pred chhhhcccchhHhhhcCcchhhhHHHHHhhhhcc
Confidence 9999999999999999999999999999998643
No 211
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.61 E-value=7.2e-06 Score=77.63 Aligned_cols=90 Identities=10% Similarity=0.060 Sum_probs=59.7
Q ss_pred hHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHH-H-H--Hhc-CchhHHHHHHHHHHHhh
Q 013253 63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILS-C-I--TKH-SPQYKILMIGRILGGIA 137 (447)
Q Consensus 63 i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~-~-l--~~~-~~~~~~l~~~r~l~G~~ 137 (447)
..+++|.++.+.|.......+...+++++.|++.||+|||+.+..+..+..+. . + ... ..+.+...+.-.+.+.+
T Consensus 221 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (377)
T PRK11102 221 YIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGC 300 (377)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34668999999998888887777788889999999999999999887765442 2 1 122 23455554444444544
Q ss_pred hhhhhhhhhHHHHhhh
Q 013253 138 TSLLFSAFESWLVAEH 153 (447)
Q Consensus 138 ~~~~~~~~~~~~i~~~ 153 (447)
.+...+.... .+.|.
T Consensus 301 ~~~~~~~~~~-~~~~~ 315 (377)
T PRK11102 301 VSMISSNAMA-VILDE 315 (377)
T ss_pred HHHhhHHHHH-HHhcc
Confidence 4444444433 45544
No 212
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.58 E-value=1.5e-06 Score=84.79 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=74.4
Q ss_pred hhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHh---c--CchhHHHHHHH
Q 013253 58 PYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK---H--SPQYKILMIGR 131 (447)
Q Consensus 58 ~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~---~--~~~~~~l~~~r 131 (447)
.+.+...++..-++...+.+.....+...++.+++++++||+|+|+.+..+..+..++. ... + .++.+.+++.-
T Consensus 252 ~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 331 (473)
T PRK10429 252 GFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAG 331 (473)
T ss_pred hheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 33333334333344555555555445566777789999999999999998887766543 211 1 34566777777
Q ss_pred HHHHhhhhhhhhhhhHHHHhhh------cccchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 013253 132 ILGGIATSLLFSAFESWLVAEH------NKRGFEQQWLSITFSKAIFLGNGLVAILSG 183 (447)
Q Consensus 132 ~l~G~~~~~~~~~~~~~~i~~~------~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~ 183 (447)
++.|++.+...+...+ +++|. +...+..+......+...-++..+|+.+.+
T Consensus 332 ~l~g~~~~~~~~~~~a-m~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g 388 (473)
T PRK10429 332 ILLNIGTALFWVLQVI-MVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIG 388 (473)
T ss_pred HHHHHHHHHHHHHHHH-HHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888988888776644 66654 122233333334444444445555544443
No 213
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.58 E-value=1.5e-06 Score=83.02 Aligned_cols=113 Identities=12% Similarity=0.101 Sum_probs=80.0
Q ss_pred hhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 013253 268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS 344 (447)
Q Consensus 268 ~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (447)
....|.+ +++++.+. |...+...++..++++..|++.||+|||+. +..+..+..+...+.......
T Consensus 23 ~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~--~~~g~~l~~~g~~l~~~~~~~-------- 91 (410)
T TIGR00885 23 NPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAG--ILLGLFLYALGAFLFWPAAEI-------- 91 (410)
T ss_pred HHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH--HHHHHHHHHHHHHHHHHHHhh--------
Confidence 3445544 55667665 777788889999999999999999999984 555555555544432211111
Q ss_pred CccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 345 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+ ..+..++..++.|++.+...+..++++.+..|+++|++..++.+..
T Consensus 92 ~----~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (410)
T TIGR00885 92 M----NYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSF 138 (410)
T ss_pred c----cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHH
Confidence 0 0135667788889999999999999999999999988887765553
No 214
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.56 E-value=1.5e-06 Score=81.61 Aligned_cols=102 Identities=18% Similarity=0.163 Sum_probs=74.0
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHH-HhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhc-C----------ch
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGF-GSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKH-S----------PQ 123 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~-~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~-~----------~~ 123 (447)
...+|...+++|.++.+.+.+..... ....++.+++|++.||+|||+.+..+.++.+++. +..+ . ++
T Consensus 229 ~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (356)
T TIGR00901 229 TVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPH 308 (356)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccch
Confidence 44555666679999999987766433 3445666689999999999999988888777654 2222 1 45
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchh
Q 013253 124 YKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFE 159 (447)
Q Consensus 124 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~ 159 (447)
.+.+....++.+++.+...+...+ ++.|..+++.+
T Consensus 309 ~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~p~~~~ 343 (356)
T TIGR00901 309 LLMLFLTITLEAVTGGLGTVAFVA-FLSKLSNPKFG 343 (356)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH-HHHHhcCCCcc
Confidence 677888889999999999888866 77777444443
No 215
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.53 E-value=9.8e-06 Score=72.74 Aligned_cols=168 Identities=15% Similarity=0.066 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhcc-CchhHHHHHHHHHHHHH-H
Q 013253 40 NNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLTYILSC-I 117 (447)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~-Grr~~l~~~~~~~~i~~-l 117 (447)
|.+.....+-.+..+....-+|.+..|-|+|+.+.|++.+...+.....+...-.+++|. ++|+..+....+..++. .
T Consensus 211 W~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G 290 (395)
T COG2807 211 WQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVG 290 (395)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 334333334444444446678899999999999999888888777777777777888864 67777777777776664 3
Q ss_pred HhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCc
Q 013253 118 TKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGP 197 (447)
Q Consensus 118 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~ 197 (447)
+.+.+.-..++- -++.|+|.|..++.+.. ++.+..+..+..+.. .+..+..|+.+ ...+|.+.+++-|..+ +|
T Consensus 291 ~~~~P~~~~~lw-~~llG~G~G~~F~laL~-li~~rs~~a~~Aa~L---SgmaQg~GYll-Aa~GP~l~G~lhDa~g-sw 363 (395)
T COG2807 291 LLLAPGQLPILW-ALLLGLGQGGAFPLALT-LILLRSSDAAIAAAL---SGMAQGVGYLL-AAFGPWLFGFLHDATG-SW 363 (395)
T ss_pred HHHhhhhHHHHH-HHHHhCccchHHHHHHH-HHHhhcCChHHHHHH---HHHhhhhhHHH-HhhhhhhHhHHHHhcC-Ch
Confidence 345554333332 49999999999999866 777653333332222 22234444433 3567788888776554 56
Q ss_pred cchhhhHHHHHHHHHHH
Q 013253 198 VAPFDAAACFLAIGMVI 214 (447)
Q Consensus 198 ~~~f~~~~~~~~~~~~~ 214 (447)
+.+........+...+.
T Consensus 364 ~~~~~~l~~~~i~m~i~ 380 (395)
T COG2807 364 SAPLVLLALATLLMLIF 380 (395)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66655544444443333
No 216
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=98.51 E-value=6.8e-05 Score=69.66 Aligned_cols=302 Identities=17% Similarity=0.121 Sum_probs=148.7
Q ss_pred hHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh
Q 013253 75 GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH 153 (447)
Q Consensus 75 g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~ 153 (447)
+.+..+-.+.+.+....+-+..+|...+.-......+..++. +.++++|.+.=+++-.+.+++.|........ +.+-.
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~-lt~~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLS-LTHFY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHH-HHHhc
Confidence 334344444455555567778888876666666677777787 4588999998888999999988888776544 44433
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHHHHhcc--ccCCC--C---
Q 013253 154 NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWT--ENYGD--P--- 226 (447)
Q Consensus 154 ~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~--~~~~~--~--- 226 (447)
+++. .+ .++. |.+.+.++|+..-..+.+ .++..|..+.....+..+..+..+..+| +.+.+ +
T Consensus 141 ~~~~--l~----~wss----GTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~ 209 (402)
T PF02487_consen 141 GKSS--LS----AWSS----GTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESES 209 (402)
T ss_pred Cccc--cc----cccC----CcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCC
Confidence 3221 11 2332 343444444433333333 4555566666555444332222221222 21100 0
Q ss_pred -CCch-hHHH----------HHHHHHH-HHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc----hHHHHH
Q 013253 227 -SESK-DLLT----------QFRGAAV-AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH----GFIFAT 289 (447)
Q Consensus 227 -~~~~-~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 289 (447)
++.+ +..+ +.+...+ +..+-|+.....+-........|.......|...-.....+. ......
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~ 289 (402)
T PF02487_consen 210 EDEAEDDLLESETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLL 289 (402)
T ss_pred CCcccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHH
Confidence 0000 0000 0000111 111112222233333344444454333344443321112222 233344
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccch
Q 013253 290 FMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFW 369 (447)
Q Consensus 290 ~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 369 (447)
+.++..+++--...+ |+ |+..++...-.+-.+.+.+-..+... ...|..++..+.-|+.-|..+
T Consensus 290 YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fi------------psi~ivf~lif~eGLlGGa~Y 353 (402)
T PF02487_consen 290 YQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFI------------PSIWIVFVLIFYEGLLGGASY 353 (402)
T ss_pred HHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHh------------hHHHHHHHHHHHHHHhhhHHH
Confidence 455555554332221 23 33222222222222222221222111 113566667777888888889
Q ss_pred hHHHHHHhhcCChhhhccccchhhhh--hhHHHHHHH
Q 013253 370 PSIMKMRSQYIPEEARSTIMNFFRIP--LNIFVCVVL 404 (447)
Q Consensus 370 ~~~~~~~~~~~p~~~r~~~~g~~~~~--~~~~~~~~l 404 (447)
...+..+.|..|+++|--++|..... .|+.+++.+
T Consensus 354 VNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll 390 (402)
T PF02487_consen 354 VNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLL 390 (402)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 88899999999999999888887764 566665554
No 217
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.51 E-value=1.7e-06 Score=85.31 Aligned_cols=101 Identities=7% Similarity=0.009 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHh
Q 013253 284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA 363 (447)
Q Consensus 284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 363 (447)
+.+.+...++.+++.++.|++.||+|||+. +.....+..+...+....... . .....+..++.-++.|+
T Consensus 59 ~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~--~~~~~~~~~v~~~~~~~~~~~--------~-~~~~~~~~~~~r~l~G~ 127 (502)
T TIGR00887 59 AAVNGSASIGTLAGQLFFGWLADKLGRKRV--YGMELIIMIIATVASGLSPGS--------S-PKSVMATLCFWRFWLGV 127 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHH--HHHHHHHHHHHHHHHHHccCc--------c-cchHHHHHHHHHHHHHH
Confidence 566777789999999999999999999983 444444444333332221111 0 00011356788889999
Q ss_pred hhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 364 CVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 364 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+.+...+....+.+|.+|++.|+++.++.+..
T Consensus 128 ~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~ 159 (502)
T TIGR00887 128 GIGGDYPLSAIITSEFATKKWRGAMMAAVFAM 159 (502)
T ss_pred HHhhhhHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 99999999999999999999999999887664
No 218
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.50 E-value=4.1e-06 Score=81.80 Aligned_cols=153 Identities=12% Similarity=-0.011 Sum_probs=85.1
Q ss_pred chhHhHhH-hhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHH--------HHHHHHH--HHHH-HHhc-Cch
Q 013253 57 GPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRAC--------VTYCLTY--ILSC-ITKH-SPQ 123 (447)
Q Consensus 57 ~~~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l--------~~~~~~~--~i~~-l~~~-~~~ 123 (447)
...+|... +++|.+..+.|...+..++.+.+++++.|+++||+++|+.. ..+.... ++.. .... ..+
T Consensus 281 ~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (465)
T TIGR00894 281 PTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAA 360 (465)
T ss_pred HHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 34455554 66899999999888888888888889999999998755321 1111111 1111 1122 334
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccC-ccchhh
Q 013253 124 YKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLG-PVAPFD 202 (447)
Q Consensus 124 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~-~~~~f~ 202 (447)
....++.-.+.+.+.+...+.... ...|..++ ..+ ...........+++.++|.+.+.+.+..+|+ |...|.
T Consensus 361 ~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~--~~g----~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~ 433 (465)
T TIGR00894 361 FYLTIIILTLANAVSSGPLAGVLI-NSLDLAPR--FLG----FIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFL 433 (465)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhh-chhhcChh--HHH----HHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHH
Confidence 444444444545444444333211 22233222 222 2222344445578888888888777654443 677777
Q ss_pred hHHHHHHHHHHHHH
Q 013253 203 AAACFLAIGMVIIL 216 (447)
Q Consensus 203 ~~~~~~~~~~~~~~ 216 (447)
+.+...++..++..
T Consensus 434 ~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 434 IMAFVNILCVIFYL 447 (465)
T ss_pred HHHHHHHHHHHHee
Confidence 77666665544433
No 219
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.50 E-value=4.5e-06 Score=72.65 Aligned_cols=129 Identities=19% Similarity=0.142 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHhhhhhc---chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHH
Q 013253 39 KNNYLLVYSLMMAGDWLQ---GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILS 115 (447)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~---~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~ 115 (447)
||..+..........+.. +.+-|++++++|+|.+|.+.+....-+... .+++.|.+.||+|+|.++.++.+...+|
T Consensus 1 rW~~l~a~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~-~G~~~G~l~d~~gp~~~l~iG~~~~~~G 79 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSY-FGILAGLLYDRFGPWVVLLIGAVLGFVG 79 (250)
T ss_pred ChhhHHHHHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhh-ccHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 355444444444433322 566678899999999999988777766554 5788999999999999999999888777
Q ss_pred H-HH--hc-----CchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh-cccchhhhHHHHHHH
Q 013253 116 C-IT--KH-----SPQYKILMIGRILGGIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFS 168 (447)
Q Consensus 116 ~-l~--~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~ 168 (447)
. .. .. .+++|.+.+..++.|.+.+....++...-+... ++||...+......+
T Consensus 80 Y~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~G 141 (250)
T PF06813_consen 80 YGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFG 141 (250)
T ss_pred HHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHH
Confidence 3 21 21 246788888888888887766555423123333 678888776666544
No 220
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.50 E-value=7.1e-06 Score=89.47 Aligned_cols=99 Identities=15% Similarity=0.166 Sum_probs=76.7
Q ss_pred HhHhhcCCCCc-chhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHhhhh
Q 013253 62 YLYSTYGFGKG-EIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATS 139 (447)
Q Consensus 62 ~i~~~~g~s~~-~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~ 139 (447)
...+++|.+.. +.|++.+...+...+++++.|+++||+++|+.+.++.++.+++. +..+.++.+.+++..++.|++.+
T Consensus 258 ~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 337 (1146)
T PRK08633 258 YAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAG 337 (1146)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 33467899988 88888777777677778899999999999999988888777765 45667788888888999999998
Q ss_pred hhhhhhhHHHHhhh---cccchhhh
Q 013253 140 LLFSAFESWLVAEH---NKRGFEQQ 161 (447)
Q Consensus 140 ~~~~~~~~~~i~~~---~~r~~~~~ 161 (447)
...+...+ ++.+. +.|++..+
T Consensus 338 ~~~~~~~~-~~~~~~p~~~rg~~~~ 361 (1146)
T PRK08633 338 LFIVPLNA-LIQFRAPEKELGKVLA 361 (1146)
T ss_pred HhhHHHHH-HHhhcCCccchhhhhH
Confidence 88777655 66655 33455444
No 221
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.48 E-value=3.4e-05 Score=77.27 Aligned_cols=154 Identities=14% Similarity=0.216 Sum_probs=100.7
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhc-cCchhHHHHHHHHHHHHH-HHhcCc--------hhHH
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSC-ITKHSP--------QYKI 126 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr-~Grr~~l~~~~~~~~i~~-l~~~~~--------~~~~ 126 (447)
..+..++.+.+|.+.++...++........+.+.++|.++|+ +||++.+.++.++..++. +.++.. ....
T Consensus 8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~ 87 (654)
T TIGR00926 8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL 87 (654)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence 334445567788888888777777666677888889999997 699999999999988875 444321 1234
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHhhh-cc--cchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc-----ccCcc
Q 013253 127 LMIGRILGGIATSLLFSAFESWLVAEH-NK--RGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSF-----SLGPV 198 (447)
Q Consensus 127 l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~--r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~-----~~~~~ 198 (447)
.+++-.+..+|.|+.-|...+ ...|. ++ +.++.+. ++..+.. ..+|..+++.+..++.+.. .++|.
T Consensus 88 ~l~gLaLia~G~GgiKp~vsa-f~gdqf~~~~~~~~~s~----F~~fY~~-iNiGSlis~~i~~~l~~~~~~fg~~~~~~ 161 (654)
T TIGR00926 88 DLLGLALIALGTGGIKPCVSA-FGGDQFEERQLSLRSRF----FSFFYFA-INAGSLISTIITPILRGDVGCFGCQDCYP 161 (654)
T ss_pred HHHHHHHHHhhccccccCchh-hhHhhcCccchhHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHhhcccccCcchH
Confidence 567778888899999888856 77765 22 2233343 3333332 3355555555555554221 13477
Q ss_pred chhhhHHHHHHHHHHHHH
Q 013253 199 APFDAAACFLAIGMVIIL 216 (447)
Q Consensus 199 ~~f~~~~~~~~~~~~~~~ 216 (447)
..|.+.++..+++++...
T Consensus 162 ~aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 162 LAFGVPAILMILALIVFM 179 (654)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788888777776665554
No 222
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.47 E-value=1.3e-06 Score=80.00 Aligned_cols=164 Identities=16% Similarity=0.104 Sum_probs=106.3
Q ss_pred HHHHHHHHhhhhhcchh-Hh--HhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHH-H
Q 013253 43 LLVYSLMMAGDWLQGPY-VY--YLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCI-T 118 (447)
Q Consensus 43 ~~~~~~~~~~~~~~~~~-l~--~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~l-~ 118 (447)
..+..-....|++...+ +- .-.+++|++..++........+.+.+++.++|++.||+|.|+++..+.++..+.++ .
T Consensus 256 ~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~ 335 (438)
T COG2270 256 LFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYL 335 (438)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHH
Confidence 33334444456665221 11 12258999999998777777777888888999999999999999999999988664 3
Q ss_pred hcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCcc
Q 013253 119 KHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPV 198 (447)
Q Consensus 119 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~ 198 (447)
-+...-..+.+.-.+.|.+.|..+..+.+ +..+..++++.... ++. +.+..-.+..++|.+.+.+.+..+ .-|
T Consensus 336 ~~~~~~~~f~i~gll~g~s~G~~qA~SRS-y~~~lvp~~k~~~f----Fgl-yaltgra~S~~gp~lv~v~t~iTg-~~r 408 (438)
T COG2270 336 IFLEGELDFWILGLLVGTSLGGAQASSRS-YLARLVPKGKEGRF----FGL-YALTGRAASFLGPFLVAVITQITG-SSR 408 (438)
T ss_pred HHccccHHHHHHHHHHHHhcchHHHHHHH-HHHHhCCCccccce----eeh-hhhhhhHHHHHHHHHHHHHHHHhc-chh
Confidence 44555556666778999999999999988 77776444444332 221 222233555666776666665444 235
Q ss_pred chhhhHHHHHHHHHH
Q 013253 199 APFDAAACFLAIGMV 213 (447)
Q Consensus 199 ~~f~~~~~~~~~~~~ 213 (447)
.-+....++..+.+.
T Consensus 409 ~g~~~i~vll~iGl~ 423 (438)
T COG2270 409 AGVLSIIVLLLIGLL 423 (438)
T ss_pred hHHHHHHHHHHhhHh
Confidence 444444444444433
No 223
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.46 E-value=9.9e-07 Score=70.24 Aligned_cols=90 Identities=11% Similarity=0.092 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccc
Q 013253 289 TFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIF 368 (447)
Q Consensus 289 ~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 368 (447)
...++..++.+..+++.||+|||+. +........+.......... .+.......+.+++.+..
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~--~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~g~~~~~~ 68 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPV--LLVGLFIFVLSTAMFALSSN---------------ITVLIIARFLQGFGAAFA 68 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHH--HHHHHHHHHHHHHHHHHhcc---------------HHHHHHHHHHHHHHHHHH
Confidence 3457788899999999999998873 43343333333333222111 135566778888888888
Q ss_pred hhHHHHHHhhcCChhhhccccchhhhh
Q 013253 369 WPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 369 ~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
.+....+..|..|+++|++..+..+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (141)
T TIGR00880 69 LVAGAALIADIYPPEERGVALGLMSAG 95 (141)
T ss_pred HHhHHHHHHHHCChhhhhHHHHHHHHh
Confidence 899999999999999999998887764
No 224
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=98.41 E-value=2.3e-05 Score=69.62 Aligned_cols=300 Identities=13% Similarity=0.063 Sum_probs=164.4
Q ss_pred hhcCCCCcchh----HHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHhhhh
Q 013253 65 STYGFGKGEIG----QLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATS 139 (447)
Q Consensus 65 ~~~g~s~~~~g----~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~ 139 (447)
.+.+++..|+. -+.+-.+.+..+ +.=.+.|-.-.|++++.-.+...... +.-+.++.+.+=+.-+..|...+
T Consensus 34 p~~NlT~~~l~~evyPvwTYSYLv~Lv---pvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA 110 (433)
T KOG3810|consen 34 PDKNLTEDQLTNEVYPVWTYSYLVGLV---PVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA 110 (433)
T ss_pred CCCCccHHHHhcccccchhHHHHHHHH---HHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH
Confidence 45566666654 112223332322 34457898888888877766665555 55789999998888899998877
Q ss_pred hhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHHH
Q 013253 140 LLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIIL 216 (447)
Q Consensus 140 ~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~ 216 (447)
....-- + ++-+. ++..+..+..++ ....|...|..++..+ ++...+.....=.+......++..+..
T Consensus 111 aEIAYy-s-YIYs~Vd~~~Yqrvt~y~Ra----A~L~g~~~g~vlaQlL----vs~~~~sy~~LN~ISL~~~~ia~~~A~ 180 (433)
T KOG3810|consen 111 AEIAYY-S-YIYSKVDPEMYKRVTGYCRA----AFLVGKFVGSVLAQLL----VSLETLSYTTLNYISLAEVTIAVLLAL 180 (433)
T ss_pred HHHhhh-h-eeeeecCHHHHHHHHHHhHH----HHHHHhHHHhHHHHHH----hhhcccchhhhchhhHHHHHHHHHHHh
Confidence 764332 3 44333 333333332222 3333444444444444 332333332222232222222222222
Q ss_pred HhccccCC------CCCC-----------chhH-------HHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhccc
Q 013253 217 SSWTENYG------DPSE-----------SKDL-------LTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTP 272 (447)
Q Consensus 217 ~~~~~~~~------~~~~-----------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (447)
.+|..++ ++++ ..+. ...+..+..+..++|++....+-..+...+.+ .+.+|..
T Consensus 181 -fLP~v~rSl~f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~-QV~nY~Q 258 (433)
T KOG3810|consen 181 -FLPRVKRSLYFHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYY-QVTNYTQ 258 (433)
T ss_pred -hCCCCchhhhhhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhH-HHHHHHH
Confidence 3332211 0000 0000 11122234455677777776666655555544 3455544
Q ss_pred ccccccCCCCc----hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccc
Q 013253 273 ALSPNDEEIPH----GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGIS 348 (447)
Q Consensus 273 ~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (447)
..-++....+. |..-++..+.+.++.+..|.+--++.|+....+..+....+.+........+
T Consensus 259 ~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~------------- 325 (433)
T KOG3810|consen 259 ILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQH------------- 325 (433)
T ss_pred HHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccc-------------
Confidence 43333222222 6666777788888999999987777666543333343333333222211111
Q ss_pred cchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhh
Q 013253 349 FSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRI 394 (447)
Q Consensus 349 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 394 (447)
.|+..++.+++...+....++...-+++...++.-|...|+..+
T Consensus 326 --Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTF 369 (433)
T KOG3810|consen 326 --IWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTF 369 (433)
T ss_pred --eehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHH
Confidence 36888999999999998888888888999999999999998554
No 225
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.41 E-value=1.1e-05 Score=76.14 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=73.8
Q ss_pred hhcCCC--CcchhHHHHHHHHhhhhh-ccccchhhhccCchhHHHHHHHHHHHHH-HHhc--CchhHHHHHHHHHHHhhh
Q 013253 65 STYGFG--KGEIGQLFIAGFGSSMLF-GTIVGSLADKQGRKRACVTYCLTYILSC-ITKH--SPQYKILMIGRILGGIAT 138 (447)
Q Consensus 65 ~~~g~s--~~~~g~~~~~~~~~~~l~-~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~--~~~~~~l~~~r~l~G~~~ 138 (447)
-++.++ +.+...... ....+.+. .+++.++.+|+|+|+++.++.++..++. +..+ .++.+.+++..++.+++.
T Consensus 263 ~~y~lg~~~l~~~~~~~-~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~ 341 (467)
T COG2211 263 VTYVLGDPELFAYLLLL-ASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGT 341 (467)
T ss_pred EEEEcCChHHHHHHHHH-HHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHh
Confidence 344443 333333333 33334444 5689999999999999999999998875 4444 457888899999999999
Q ss_pred hhhhhhhhHHHHhhh------cccchhhhHHHHHHHHHHHHHHHHHHHH
Q 013253 139 SLLFSAFESWLVAEH------NKRGFEQQWLSITFSKAIFLGNGLVAIL 181 (447)
Q Consensus 139 ~~~~~~~~~~~i~~~------~~r~~~~~~~~~~~~~~~~~g~~ig~~~ 181 (447)
+...+..-+ +++|. +...++.+...+.++...=+|.+++..+
T Consensus 342 ~~~~~l~wa-m~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~ 389 (467)
T COG2211 342 GIANPLPWA-MVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI 389 (467)
T ss_pred hccccccHH-HhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 998887655 55443 3334444544444444444445444433
No 226
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.41 E-value=7.8e-06 Score=70.57 Aligned_cols=129 Identities=16% Similarity=0.207 Sum_probs=80.7
Q ss_pred hHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH--HHhcCchhHHHHHHHHHHHhhhhh
Q 013253 63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC--ITKHSPQYKILMIGRILGGIATSL 140 (447)
Q Consensus 63 i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~--l~~~~~~~~~l~~~r~l~G~~~~~ 140 (447)
..+++|+|+...+.+.+..+....+.+|+.|.++||+|++-..+.+..+..+.. ...+ +.+.=.++..+.|+....
T Consensus 291 F~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysl 368 (459)
T KOG4686|consen 291 FQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSL 368 (459)
T ss_pred HHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHH
Confidence 348899999999999999999999999999999999999998888877665532 2222 122223445566665443
Q ss_pred ----hhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc-cCccchhhh
Q 013253 141 ----LFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFS-LGPVAPFDA 203 (447)
Q Consensus 141 ----~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~-~~~~~~f~~ 203 (447)
.+|.. +.++.|. +-|..-+..+. ..+ +|..+.+++++.+.+..+ +.|.-.|..
T Consensus 369 lAcslWP~v-a~~vpE~-qLGTaygf~qs----IqN----Lgla~i~Iiag~i~d~~g~y~~le~ffl 426 (459)
T KOG4686|consen 369 LACSLWPCV-ASLVPEE-QLGTAYGFIQS----IQN----LGLAFIPIIAGFIADGDGSYDNLEAFFL 426 (459)
T ss_pred HHHHHhhhh-hhhCCHH-HhcchHHHHHH----HHh----hhhhHHhhhhheeecCCCchhhHHHHHH
Confidence 34444 3245553 33443332222 223 555666666776666554 455444444
No 227
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.39 E-value=1.6e-06 Score=87.18 Aligned_cols=125 Identities=10% Similarity=0.063 Sum_probs=83.4
Q ss_pred hhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCC----
Q 013253 268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPS---- 340 (447)
Q Consensus 268 ~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---- 340 (447)
..-.+.+ ++.++.+. |.+.+...++..++.++.+++.||.+||+. +..+..+.++..++..+.+...++.
T Consensus 53 ~~~l~~i-ek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~--i~~g~ll~~lg~ll~alphf~~~~y~~~~ 129 (633)
T TIGR00805 53 NSSLTTI-ERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIV--IGIGCAIMGLGSFLLSLPHFLSGRYSYST 129 (633)
T ss_pred Hhhchhh-hhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceE--EEecHHHHHHHHHHHhChHHhcCCccccc
Confidence 3334433 44566554 777888889999999999999999998883 5555555555554433322100000
Q ss_pred ------C-----------C----------C-----CCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccc
Q 013253 341 ------N-----------V----------K-----SGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTI 388 (447)
Q Consensus 341 ------~-----------~----------~-----~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~ 388 (447)
+ . + ..+.......++++-++.|++.+..++...+++.|.+|+++|+..
T Consensus 130 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~ 209 (633)
T TIGR00805 130 TVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLY 209 (633)
T ss_pred cccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHH
Confidence 0 0 0 000011234566789999999999999999999999999999999
Q ss_pred cchhhhh
Q 013253 389 MNFFRIP 395 (447)
Q Consensus 389 ~g~~~~~ 395 (447)
.|+....
T Consensus 210 ~~i~~~~ 216 (633)
T TIGR00805 210 IGILESI 216 (633)
T ss_pred HHHHHHH
Confidence 9887664
No 228
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.38 E-value=9.8e-06 Score=76.38 Aligned_cols=104 Identities=7% Similarity=-0.071 Sum_probs=79.8
Q ss_pred cccccCCCCc----hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccc
Q 013253 274 LSPNDEEIPH----GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISF 349 (447)
Q Consensus 274 ~~~~~~~~~~----~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (447)
++.+.++.+. |.+......+..+..+++|+++||+|.|+. +......-++...+..+....
T Consensus 51 ~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~v--L~l~~l~Wsl~t~L~~fa~Sl------------- 115 (511)
T TIGR00806 51 YLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPV--LVLQALSFVCVWLLLLLGTSV------------- 115 (511)
T ss_pred HHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHH--HHHHHHHHHHHHHHHHHHHHH-------------
Confidence 4444556554 677888889999999999999999998883 555555545444444433222
Q ss_pred chhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 350 SGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 350 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+.+.+.-+++|++.+..+ ....++.+.+|+++|+++.|+.+.+
T Consensus 116 --~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg 158 (511)
T TIGR00806 116 --WHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAA 158 (511)
T ss_pred --HHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 366788899999999888 9999999999999999999988875
No 229
>TIGR00898 2A0119 cation transport protein.
Probab=98.38 E-value=3.9e-06 Score=82.85 Aligned_cols=95 Identities=16% Similarity=0.261 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHh
Q 013253 284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA 363 (447)
Q Consensus 284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 363 (447)
+...+...++.+++.++.|+++||+|||+. +..+..+..+......+... .+..++..++.|+
T Consensus 130 ~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~--~~~~~~~~~i~~~~~~~~~~---------------~~~~~~~r~l~G~ 192 (505)
T TIGR00898 130 DLTQSCFFVGVLLGSFVFGYLSDRFGRKKV--LLLSTLVTAVSGVLTAFSPN---------------YTVFLVFRLLVGM 192 (505)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhhccchHH--HHHHHHHHHHHHHHHHHccc---------------HHHHHHHHHHHHh
Confidence 777788889999999999999999999983 44444444444333322211 1466777888999
Q ss_pred hhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 364 CVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 364 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+.+...+...+++.|.+|+++|+.+.++.+..
T Consensus 193 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~ 224 (505)
T TIGR00898 193 GIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVF 224 (505)
T ss_pred hccchHHHHHHHhheecChhhhHHHHHHHHHH
Confidence 99988999999999999999999988776543
No 230
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=5.4e-06 Score=75.12 Aligned_cols=139 Identities=17% Similarity=0.104 Sum_probs=91.4
Q ss_pred chhHhH-hHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccC--chhHHHHHHHHHHHHH-HHhcCchhHHHHHHHH
Q 013253 57 GPYVYY-LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQG--RKRACVTYCLTYILSC-ITKHSPQYKILMIGRI 132 (447)
Q Consensus 57 ~~~l~~-i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~G--rr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~ 132 (447)
-|.++. +.|.+..+..++|..+.-..+...++..+.|.++||++ |...-..+++..+.++ ...+++++.++.+-++
T Consensus 290 ePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~ 369 (464)
T KOG3764|consen 290 EPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNF 369 (464)
T ss_pred CcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhH
Confidence 455554 44677766669998777666767788889999999999 5333344444445444 4478999999999998
Q ss_pred HHHhhhhhhhhhhhHHH--Hhhhcccc-hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCcc
Q 013253 133 LGGIATSLLFSAFESWL--VAEHNKRG-FEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPV 198 (447)
Q Consensus 133 l~G~~~~~~~~~~~~~~--i~~~~~r~-~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~ 198 (447)
..|++.+.......+.+ +-|.++.. .. ... ......-.+..+|..++|.+++.+.+..++.|.
T Consensus 370 ~l~~~i~~~dasl~P~l~~lvd~rh~s~~~--vYG-sVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl 435 (464)
T KOG3764|consen 370 GLGFGIGLADASLIPTLGYLVDPRHVSGFN--VYG-SVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWL 435 (464)
T ss_pred HHHHHHHHHHHHHhhhhHHhcchhhccccc--eee-eHHHHHHHHHHHhhhccccccchheeehhHHHH
Confidence 88888777766554422 22222211 10 111 122244456778889999999999977776664
No 231
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.36 E-value=8.7e-06 Score=73.37 Aligned_cols=105 Identities=19% Similarity=0.129 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHh
Q 013253 284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA 363 (447)
Q Consensus 284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 363 (447)
|.+.+.+++...+.+...|.++||+|||+. +..+.....+...+ ...... ...++.+=++.|+
T Consensus 71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkpv--ll~c~~~va~s~ll-~~~S~~--------------F~afv~aR~l~Gi 133 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLWGCLSDRYGRKPV--LLACLIGVALSYLL-WALSRN--------------FAAFVLARFLGGI 133 (451)
T ss_pred hhHhhHHHHHHHHhhhhhhhhhhhhCchHH--HHHHHHHHHHHHHH-HHHHHH--------------HHHHHHHHHhhhh
Confidence 788889999999999999999999999983 44444444443332 222222 0123333455565
Q ss_pred hhccchhHHHHHHhhcCChhhhccccchhhhh------hhHHHHHHHHh
Q 013253 364 CVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYN 406 (447)
Q Consensus 364 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~ 406 (447)
.-+ ......++++|.+++++|+.+++..++. .|+.+|+.+..
T Consensus 134 ~kg-nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 134 FKG-NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred ccC-chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 555 4567889999999999999999887764 45566666644
No 232
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.35 E-value=7e-06 Score=80.29 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHh
Q 013253 284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA 363 (447)
Q Consensus 284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 363 (447)
.++.....++..+..++.|+++|.+|||.. .+.+..+..++.+......+. -..+.+..+.|+
T Consensus 81 ~w~~~~~~l~~av~~~~~G~LSDlfGRr~~--~i~g~~l~vvG~Iv~atA~~~---------------~~~iag~~l~Gv 143 (599)
T PF06609_consen 81 SWFSTAWTLASAVSFPFVGRLSDLFGRRYF--FIIGSLLGVVGSIVCATAQNM---------------NTFIAGMVLYGV 143 (599)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhcchHH--HHHHHHHHHhHHHHhhcCCcH---------------HHHHHHHHHHHH
Confidence 677777788899999999999999999983 444444444444443322221 256788899898
Q ss_pred hhccchhHHHHHHhhcCChhhhccccchhhh
Q 013253 364 CVGIFWPSIMKMRSQYIPEEARSTIMNFFRI 394 (447)
Q Consensus 364 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 394 (447)
+.|... .....++|..|.+.|..+.++...
T Consensus 144 gaG~~~-~~~~~isEl~p~k~R~~~~~~~~~ 173 (599)
T PF06609_consen 144 GAGVQE-LAALAISELVPNKWRGLGLAIASI 173 (599)
T ss_pred hhHHHH-HHHHHHHHhcccchhhhHhHHHHH
Confidence 876544 456668999999999877655443
No 233
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.34 E-value=6.3e-06 Score=78.46 Aligned_cols=107 Identities=17% Similarity=0.233 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHh
Q 013253 284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA 363 (447)
Q Consensus 284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 363 (447)
+...+...+++++|++..++++||+|||.. +........++............ ...++++-++.|.
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~--l~~~~~l~~~~~~~~~~s~~~~~------------~e~li~GR~i~Gl 128 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNA--LLLSNLLAVLAALLMGLSKSAPS------------FEMLILGRLIVGL 128 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHH--HHHHHHHHHHHHHHHHHHHHhhh------------HHHHHHHHHHHHH
Confidence 556677789999999999999999999963 44444443333333332222211 1377888999999
Q ss_pred hhccchhHHHHHHhhcCChhhhccccchhhhh--hhHHHHHHH
Q 013253 364 CVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP--LNIFVCVVL 404 (447)
Q Consensus 364 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~--~~~~~~~~l 404 (447)
..+........++.|..|++.||....+.++. .+.+++..+
T Consensus 129 ~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~ 171 (485)
T KOG0569|consen 129 ACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVL 171 (485)
T ss_pred HhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887766654 444555433
No 234
>PRK11462 putative transporter; Provisional
Probab=98.33 E-value=2.9e-05 Score=75.40 Aligned_cols=111 Identities=8% Similarity=-0.066 Sum_probs=59.8
Q ss_pred chhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHH-HHHHhcC--chhHHHHHHHHHHHhhhhhhhhhhhHHH
Q 013253 73 EIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SCITKHS--PQYKILMIGRILGGIATSLLFSAFESWL 149 (447)
Q Consensus 73 ~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i-~~l~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 149 (447)
..+.+.....+.+.++.+++++++||+|+|+.+..+..+.++ +.+..+. ++...+.+.-++.|++.+...+...+ +
T Consensus 264 ~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~-m 342 (460)
T PRK11462 264 VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV-M 342 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 344444444555566677899999999999987765554444 2232222 22333444556677776665554333 4
Q ss_pred Hhhh------cccchhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 013253 150 VAEH------NKRGFEQQWLSITFSKAIFLGNGLVAILSGL 184 (447)
Q Consensus 150 i~~~------~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~ 184 (447)
++|. +...+..+......+...-+|.++|..+++.
T Consensus 343 ~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~ 383 (460)
T PRK11462 343 MSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGW 383 (460)
T ss_pred HHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 2223333333333444455555555555443
No 235
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=98.33 E-value=9.4e-06 Score=76.13 Aligned_cols=174 Identities=15% Similarity=0.182 Sum_probs=104.2
Q ss_pred HhcchhHHHHHHHHHhhh-hhhhhhhhhccccccc----ccCCCCchHH---HHHHHHHHHHHHHHHHHHhhc-CCCcch
Q 013253 243 IASDEKIALLGAIQSLFE-GSMYTFVFLWTPALSP----NDEEIPHGFI---FATFMLASMLGSSLASRLMAR-SPPRVE 313 (447)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~---~~~~~i~~~~~~~~~g~l~dr-~g~~~~ 313 (447)
.+++|+-....+..-+.. ++.|+ +...+..|+. ++.+.+.+.. +..+..-.-...+++||++|| +|+|++
T Consensus 16 ~f~~Pr~l~~if~vE~WERFsyYG-mraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t 94 (498)
T COG3104 16 FFGQPRGLYLIFFVELWERFSYYG-MRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT 94 (498)
T ss_pred cCCCCchHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 455565555544444443 33333 2333333333 3345666333 333334445567899999999 688874
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhh--hccccch
Q 013253 314 SYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA--RSTIMNF 391 (447)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~ 391 (447)
+..+..+..+...++.... ..++ ..+.+++.+.++|.|..-|...+++.|.+|++. |-.+.++
T Consensus 95 --I~lGail~~iGh~~L~~~~-~~~~------------~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~ 159 (498)
T COG3104 95 --IVLGAILMAIGHLVLAISS-VSGP------------GGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTL 159 (498)
T ss_pred --HHHHHHHHHHHHHHHhccc-cccc------------cHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccE
Confidence 6667777666666654432 0111 267888888889999999999999999998876 5555655
Q ss_pred hhhhh------hHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhhh
Q 013253 392 FRIPL------NIFVCVVLYNVDAFPITVMFGMCSIFLLVASVLQRRLM 434 (447)
Q Consensus 392 ~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (447)
..++. ++.+.+++.+. +++...|..+++......+.....+
T Consensus 160 fY~~iNiGsl~~p~i~~~~~~~--~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 160 FYMGINIGSLIAPIITGLLAIN--YGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred EEEEeehHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 55543 33444444444 4566677777766666555444333
No 236
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.29 E-value=3.4e-05 Score=84.09 Aligned_cols=104 Identities=10% Similarity=-0.131 Sum_probs=74.5
Q ss_pred hHhHhH-hhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcC---------------
Q 013253 59 YVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS--------------- 121 (447)
Q Consensus 59 ~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~--------------- 121 (447)
.+|.+. +.+|.++.+.|++.+...+...+++++.|+++||.++++.+..+.++.++.. ...+.
T Consensus 247 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 326 (1140)
T PRK06814 247 QLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSIL 326 (1140)
T ss_pred HhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchh
Confidence 344444 5689999999988888777777888899999999888777666655554432 22322
Q ss_pred -----chhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHH
Q 013253 122 -----PQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWL 163 (447)
Q Consensus 122 -----~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~ 163 (447)
++.+.+++..++.|++.+...+...+ ++.+. +.+++..+..
T Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~p~~~~G~v~g~~ 375 (1140)
T PRK06814 327 VFLSKRHGWRILIDLFGLAAAGGLYIVPLFA-ALQAWANPAHRARVIAAN 375 (1140)
T ss_pred hhhcccccHHHHHHHHHHHHHHHHhHHHHHH-HHHhhCCcccceeeeHHH
Confidence 67788888889999999988877655 66655 4556655533
No 237
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.29 E-value=1.8e-06 Score=60.24 Aligned_cols=68 Identities=22% Similarity=0.221 Sum_probs=56.7
Q ss_pred HHHHHHhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHH
Q 013253 45 VYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTY 112 (447)
Q Consensus 45 ~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~ 112 (447)
.+++...+.+...|+++...++.|+|+.|+|.+.++......+..|++|.++||+++++.++....+.
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 33444455666689998888999999999999999999999999999999999999999877765543
No 238
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=98.29 E-value=0.0027 Score=61.05 Aligned_cols=248 Identities=10% Similarity=-0.058 Sum_probs=118.8
Q ss_pred hHhHhHhhcCCCC-----cchhHHHHHHHHhhhhh-ccccchhhhccCchhHHHHHHHHHHHHH-HHhcC-----ch---
Q 013253 59 YVYYLYSTYGFGK-----GEIGQLFIAGFGSSMLF-GTIVGSLADKQGRKRACVTYCLTYILSC-ITKHS-----PQ--- 123 (447)
Q Consensus 59 ~l~~i~~~~g~s~-----~~~g~~~~~~~~~~~l~-~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~-----~~--- 123 (447)
.+-++.|.+.++. ..+.++.....+...+. .++.+++++|++|++.+-.....+.... +.++. +.
T Consensus 25 iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p 104 (472)
T TIGR00769 25 ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHP 104 (472)
T ss_pred HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCC
Confidence 3456777776632 45667777766655555 6789999999999999888766665432 22211 11
Q ss_pred -----------------------hHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 013253 124 -----------------------YKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180 (447)
Q Consensus 124 -----------------------~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~ 180 (447)
.|...+.-+...+-.........-.+.+|..+.+.... .+. ...+|..+|.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakR----fy~-l~~~ganlg~i 179 (472)
T TIGR00769 105 TALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKR----FYA-LFGLGANVALI 179 (472)
T ss_pred cHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH----HHH-HHHHHHHHHHH
Confidence 12222222223332222222111113555532222222 222 34445667777
Q ss_pred Hhhhhhhhhhccc------ccCcc----chhhhHHHHHHHHHHHHHH--hccccCCC------CCCchhHHHHHHHHHHH
Q 013253 181 LSGLFGNLLVDSF------SLGPV----APFDAAACFLAIGMVIILS--SWTENYGD------PSESKDLLTQFRGAAVA 242 (447)
Q Consensus 181 ~~~~l~~~l~~~~------~~~~~----~~f~~~~~~~~~~~~~~~~--~~~~~~~~------~~~~~~~~~~~~~~~~~ 242 (447)
+++.+..++.+.. -..|. ..+.+..+...+....... ++..++++ .+++++......++.+.
T Consensus 180 ~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~k~k~~~~es~k~ 259 (472)
T TIGR00769 180 FSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSYNPALKEKKVKPKMSTMESLKF 259 (472)
T ss_pred HHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhccccCCCCCCHHHHHHH
Confidence 7776666654210 11221 1122222222222222111 11111111 00111112234567788
Q ss_pred HhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc------hHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013253 243 IASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH------GFIFATFMLASMLGSSLASRLMARSPPRV 312 (447)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~g~l~dr~g~~~ 312 (447)
+.|+|..+..+....+...+....-..|-.. .++.+..+. |......++..++.++..+++.+|+|-+.
T Consensus 260 i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~-v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~ 334 (472)
T TIGR00769 260 LVSSPYILDLALLVIAYGISINLVEVTWKSK-LKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLT 334 (472)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 8999887777666555544433222222222 222222111 44445555666667777799999998665
No 239
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.25 E-value=3e-05 Score=75.41 Aligned_cols=96 Identities=17% Similarity=0.058 Sum_probs=71.4
Q ss_pred hhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHH-h-c---------CchhHHHHHHHHH
Q 013253 65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCIT-K-H---------SPQYKILMIGRIL 133 (447)
Q Consensus 65 ~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~l~-~-~---------~~~~~~l~~~r~l 133 (447)
+++|.++.++|.+.....+...++....+++.+|++.|+++.++.++.+++.+. . . .++.+.+...-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 578999999998888777777777778999999999999999999998876422 1 1 1444455666788
Q ss_pred HHhhhhhhhhhhhHHHHhhhcccchhhh
Q 013253 134 GGIATSLLFSAFESWLVAEHNKRGFEQQ 161 (447)
Q Consensus 134 ~G~~~~~~~~~~~~~~i~~~~~r~~~~~ 161 (447)
.+++.+........ ++.+..+++....
T Consensus 361 ~~~~~g~~~~~~~~-~~~~~~p~~~egt 387 (468)
T TIGR00788 361 AEVLAQLKFMPFLV-LLARLCPSGCESS 387 (468)
T ss_pred HHHHHHHHHccHHH-HHHHhCCCCceeh
Confidence 88888888777645 7777644444443
No 240
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.21 E-value=7.7e-05 Score=67.98 Aligned_cols=103 Identities=24% Similarity=0.317 Sum_probs=75.8
Q ss_pred hhhcchhHhHhHhhcCCCC--cchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCch--hHHH
Q 013253 53 DWLQGPYVYYLYSTYGFGK--GEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQ--YKIL 127 (447)
Q Consensus 53 ~~~~~~~l~~i~~~~g~s~--~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~--~~~l 127 (447)
.....+..+...++++.+. .+.++..+.......+..++.|.++||+|||+.+..+.....++. +..+.++ .+.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
T COG0477 18 LGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALL 97 (338)
T ss_pred cchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 3333556666777777665 367777677666666666899999999999988888877654443 4455554 8999
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHhhhccc
Q 013253 128 MIGRILGGIATSLLFSAFESWLVAEHNKR 156 (447)
Q Consensus 128 ~~~r~l~G~~~~~~~~~~~~~~i~~~~~r 156 (447)
.+.|+.+|++.+...+.... ++.|..++
T Consensus 98 ~~~~~~~g~~~~~~~~~~~~-~~~~~~~~ 125 (338)
T COG0477 98 LILRLLQGLGGGGLLPVASA-LLSEWFPE 125 (338)
T ss_pred HHHHHHHHhhhHHHHHHHHH-HHHHhcCc
Confidence 99999999999988887755 77877443
No 241
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.20 E-value=3.4e-05 Score=75.14 Aligned_cols=150 Identities=18% Similarity=0.118 Sum_probs=109.3
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCc--hhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHH
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR--KRACVTYCLTYILSC-ITKHSPQYKILMIGRIL 133 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Gr--r~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l 133 (447)
.-++|...++.+.+..+.+.+.+..-+...++.+..|+++|+... +.+..++.+..+++. .+.+.++++.+...-.+
T Consensus 318 ~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~ 397 (509)
T KOG2504|consen 318 FVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSIL 397 (509)
T ss_pred HHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 445677778999999999988888888888888999999999984 444555555556665 56899999999999999
Q ss_pred HHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHH
Q 013253 134 GGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMV 213 (447)
Q Consensus 134 ~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~ 213 (447)
.|+..|...... +..+.|.....+..+ .++ ...+..+++..++|++++.+.+..+ +|...|+..+...+++..
T Consensus 398 fG~~~g~~~~l~-~~i~~~~~g~~~l~~----a~G-l~l~~~gi~~l~gpPiag~~~d~tg-~Y~~~f~~~g~~~~~s~~ 470 (509)
T KOG2504|consen 398 FGFCVGSFSSLT-PVILVDLVGLEKLSN----AYG-LLLLFQGIGALVGPPIAGLLYDITG-NYDHAFYFCGLCFLLSAV 470 (509)
T ss_pred HHHHHHHHHHHH-HHHHHHHcChhhcch----HHH-HHHHHhHHHHHcCcccceeeeeccC-CeeeehhhcChHHHHHHH
Confidence 999999887665 325566532223222 222 3344566888999999998877655 356777777766665543
No 242
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.18 E-value=3e-05 Score=74.58 Aligned_cols=126 Identities=13% Similarity=0.149 Sum_probs=71.6
Q ss_pred hhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhh----cCCCcchhHHHHHHHHHHHHHHHHHHhhhccC-
Q 013253 267 VFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMA----RSPPRVESYMQIVFVVSSVSLLLPIVTSFLVA- 338 (447)
Q Consensus 267 ~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~d----r~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~- 338 (447)
...+.+.|.+ ..+.+. +.+.....+.+++.+++.|+++| |+|||+. .+..+.....+++.+.........
T Consensus 23 ~~~~l~~yl~-~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp-~il~g~~~~~~~l~ll~~~~~~~~~ 100 (477)
T TIGR01301 23 QLSLLTPYVQ-ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRP-FIAAGAALVAFAVILIGFAADIGHL 100 (477)
T ss_pred HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHH-HHHHHHHHHHHHHHHHHhCchhhhh
Confidence 4555555654 355555 66667777889999999999999 5999983 222223333333333222111000
Q ss_pred -CCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhh--ccccchhhh
Q 013253 339 -PSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEAR--STIMNFFRI 394 (447)
Q Consensus 339 -~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r--~~~~g~~~~ 394 (447)
.++.+..+.....+..++++.+..++.....+...+++.|..|+++| +.+.++.+.
T Consensus 101 ~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~ 159 (477)
T TIGR01301 101 FGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSF 159 (477)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH
Confidence 00000000011112445555566677777888889999999998875 456665444
No 243
>PTZ00207 hypothetical protein; Provisional
Probab=98.08 E-value=6.3e-05 Score=74.13 Aligned_cols=115 Identities=13% Similarity=-0.052 Sum_probs=71.0
Q ss_pred hhcccccccccCCCCchHHHHHHHH--HHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 013253 268 FLWTPALSPNDEEIPHGFIFATFML--ASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSG 345 (447)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (447)
..+.|.+ ++.++.+...+..+..+ ......++.|++.||+|+|+. +.++.....++.....+....
T Consensus 47 sv~s~~L-~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~v--llig~ll~~iG~ll~ala~~~--------- 114 (591)
T PTZ00207 47 NLISGAM-QARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPI--FVLSMTVFCLGTLLFALTFQE--------- 114 (591)
T ss_pred HHHHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH--HHHHHHHHHHHHHHHHHHhcc---------
Confidence 4445543 55567766333222222 223455678999999999983 555655555555544332111
Q ss_pred ccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 346 GISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 346 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
......+.+.+..++.|++.+..++.....+.+.+| ++||++.|+....
T Consensus 115 ~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~ 163 (591)
T PTZ00207 115 VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTF 163 (591)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHH
Confidence 001112456667778888888777778888899887 5689999887765
No 244
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.04 E-value=7.7e-05 Score=69.13 Aligned_cols=99 Identities=8% Similarity=-0.007 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHh
Q 013253 284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA 363 (447)
Q Consensus 284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 363 (447)
+.+.....++.+.|++..|++.||+|||+. ......+..++.++....... ++.....+.+...-.+.|+
T Consensus 87 ~~Vn~~A~vGti~GQl~FG~lgD~~GRK~v--YG~~liImIi~t~~~~~s~~~--------~~~~~~m~~L~~~R~~LGi 156 (538)
T KOG0252|consen 87 ALVNAAALVGTIFGQLFFGWLGDKFGRKKV--YGKELIIMIICSALSGLSVGT--------TSPLGVMMTLCFFRFLLGI 156 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhh--hhHHHHHHHHHHHHhccCCCC--------CCCcchhhHHHHHHHHhhc
Confidence 556666778999999999999999999983 333333333333322211111 1111122355666788899
Q ss_pred hhccchhHHHHHHhhcCChhhhccccchh
Q 013253 364 CVGIFWPSIMKMRSQYIPEEARSTIMNFF 392 (447)
Q Consensus 364 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~ 392 (447)
|.|.-+|...+..+|...++.||+-.+..
T Consensus 157 GIGGDYPlSAtI~SE~an~~~RGa~iaav 185 (538)
T KOG0252|consen 157 GIGGDYPLSATIMSESANKKTRGAFIAAV 185 (538)
T ss_pred cccCCCcchHHHhhhhhhhccccceeEEE
Confidence 99999999999999999999999766543
No 245
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.00 E-value=5.6e-05 Score=74.68 Aligned_cols=104 Identities=17% Similarity=0.230 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHh
Q 013253 284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA 363 (447)
Q Consensus 284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 363 (447)
+.+.+...+++.++.++.|+++|++|||+. +..+.....+..++.....+. +...++-++.|+
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~--l~~~~~~~~iG~ii~~~a~~~---------------~~l~~GR~l~G~ 154 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKT--LLLAVVLFLIGAIIIALAPSW---------------YQLIVGRILTGL 154 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHhhhH---------------HHHHHHHHHhcc
Confidence 677788889999999999999999999984 555555555555544443332 477889999999
Q ss_pred hhccchhHHHHHHhhcCChhhhccccchhhhh--hhHHHHHHH
Q 013253 364 CVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP--LNIFVCVVL 404 (447)
Q Consensus 364 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~--~~~~~~~~l 404 (447)
+.|........+.+|..|++.||...+..+.. .+..++...
T Consensus 155 g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~ 197 (513)
T KOG0254|consen 155 GVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCI 197 (513)
T ss_pred chhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998877765 344444333
No 246
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=97.98 E-value=0.0012 Score=60.94 Aligned_cols=170 Identities=21% Similarity=0.269 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhhhhhcchhHhHhH-hhcCCCCcchhHHHHHHHHhhhhhcc-ccchhhh-ccCchhHHHHHHHHHHHHH-
Q 013253 41 NYLLVYSLMMAGDWLQGPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGT-IVGSLAD-KQGRKRACVTYCLTYILSC- 116 (447)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~-~~G~l~D-r~Grr~~l~~~~~~~~i~~- 116 (447)
+.+...++..++..++-+++.+.- +-||++..|...+....-. +.+.+. ..|++.. |.++|+.-.+++....++.
T Consensus 212 ~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~-G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~ 290 (403)
T PF03209_consen 212 RFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGG-GTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFA 290 (403)
T ss_pred HHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence 355566677777777766665444 6789998887755443333 333333 5676555 7888888888888777653
Q ss_pred ---HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh-
Q 013253 117 ---ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLL- 189 (447)
Q Consensus 117 ---l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l- 189 (447)
+.+..++.+.+...-++.|++.|.......+ ..-|. ++.+.+.+ .++..+.++..+|..+++.+-...
T Consensus 291 lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals-~mM~lt~~~~aG~~mG----~WGaaQA~A~Glg~~~GG~~~D~~~ 365 (403)
T PF03209_consen 291 LIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALS-LMMDLTSAGRAGLFMG----AWGAAQAIARGLGTFLGGALRDLVR 365 (403)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHH-HHHhCCCCcchhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2367788999999999999999999887766 44444 33444444 344455555555555555433222
Q ss_pred --hc-ccccCccchhhhHHHHHHHHHHHHH
Q 013253 190 --VD-SFSLGPVAPFDAAACFLAIGMVIIL 216 (447)
Q Consensus 190 --~~-~~~~~~~~~f~~~~~~~~~~~~~~~ 216 (447)
.+ ....++...|.+-....+++.++..
T Consensus 366 ~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 366 ALFGNSPALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1222334455555555555544443
No 247
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.93 E-value=0.0001 Score=70.86 Aligned_cols=96 Identities=22% Similarity=0.297 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHh
Q 013253 284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA 363 (447)
Q Consensus 284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 363 (447)
+.+++....+.+++.+..+++.||+|.|+. +..+..+.++...+.-...... .+.+++.-++.|+
T Consensus 76 ~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v--~~~~~~~sa~~t~l~P~aa~~~-------------~~~~~~~R~lqGl 140 (466)
T KOG2532|consen 76 GLIFSSFFWGYILGQIPGGYLADKFGARRV--FFISGLISALLTLLTPLAASIG-------------FYLLLVLRFLQGL 140 (466)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHcCchHH--HHHHHHHHHHHHHHHHHHHHhc-------------chhhHHHHHHhHH
Confidence 889999999999999999999999999883 5555555444444322222210 1255788899999
Q ss_pred hhccchhHHHHHHhhcCChhhhccccchhhh
Q 013253 364 CVGIFWPSIMKMRSQYIPEEARSTIMNFFRI 394 (447)
Q Consensus 364 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 394 (447)
+.+..+|....+..+-.|+++|++..++...
T Consensus 141 ~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~ 171 (466)
T KOG2532|consen 141 GQGVLFPAIGSILAKWAPPNERSTFIAILTA 171 (466)
T ss_pred HHhHHHhhhhceeeeECCHHHHHHHHHHHHH
Confidence 9999999999999999999999988777554
No 248
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=97.93 E-value=2e-05 Score=55.40 Aligned_cols=76 Identities=14% Similarity=0.164 Sum_probs=64.5
Q ss_pred hhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHH
Q 013253 52 GDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKIL 127 (447)
Q Consensus 52 ~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l 127 (447)
+.+...|.+|.+.+|.++|.++.|++.+..++...++.+...++.++..+++.+..+.+...+.+ .+++.++.+.+
T Consensus 7 gRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 7 GRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred HHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 44445899999999999999999999999988777777788899999888899999999888876 67888877654
No 249
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.88 E-value=0.00042 Score=63.44 Aligned_cols=129 Identities=14% Similarity=0.144 Sum_probs=86.3
Q ss_pred chhHhHhHhh-cCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHH
Q 013253 57 GPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILG 134 (447)
Q Consensus 57 ~~~l~~i~~~-~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~ 134 (447)
..+++...+| .|.+..|.+...+......+++..++-++..|+...|.+....+...+-+ ..+++++...+. .-++.
T Consensus 256 gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~-~l~~i 334 (422)
T COG0738 256 GSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALY-ALFLI 334 (422)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHH-HHHHH
Confidence 6666677766 77787777766666666555666677788889999999988887766644 557777755444 45788
Q ss_pred HhhhhhhhhhhhHHHHhhh-cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 013253 135 GIATSLLFSAFESWLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSL 195 (447)
Q Consensus 135 G~~~~~~~~~~~~~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~ 195 (447)
|+..+..+|+..+ +-.+. .+.... +.....-..+|..+-|.+-+++.|..+.
T Consensus 335 g~F~simfPTIfs-lal~~l~~~ts~--------~s~~l~maivGGAiiP~l~G~i~d~~g~ 387 (422)
T COG0738 335 GLFNSIMFPTIFS-LALKNLGEHTSV--------GSGLLVMAIVGGAIIPPLQGVIADMFGI 387 (422)
T ss_pred HHHhHHHHHHHHH-HHHhccCccccc--------cceeeeeheecchHHHHHHHHHHHhhhh
Confidence 9999999999866 53333 211111 1122223447778888888888876654
No 250
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=97.86 E-value=0.00042 Score=60.46 Aligned_cols=126 Identities=19% Similarity=0.125 Sum_probs=71.1
Q ss_pred hhhhhhhhhhhhcccccccccCCCCchHH---HHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhh
Q 013253 258 LFEGSMYTFVFLWTPALSPNDEEIPHGFI---FATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTS 334 (447)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~ 334 (447)
...+..|. ...|.|.+ ++..+.++... .....++..+ .++.|.+.||+|++. .+.++.....++........
T Consensus 13 ~~~Gt~Y~-Fs~yS~~L-k~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~--~l~iG~~~~~~GY~~~~l~~ 87 (250)
T PF06813_consen 13 LCSGTTYT-FSAYSPQL-KSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWV--VLLIGAVLGFVGYGLLWLAV 87 (250)
T ss_pred HhcCcccc-hhhhhHHH-HHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHH--HHHHHHHHHHHHHHHHHHHH
Confidence 33444454 35566655 45677777433 3344466655 478899999999876 35566666555555443322
Q ss_pred hccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhhhh
Q 013253 335 FLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLN 397 (447)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 397 (447)
.... + ....|...+..++.+.+....+........+.+|+ +||++.|+.-...|
T Consensus 88 ~~~i------~--~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~G 141 (250)
T PF06813_consen 88 SGRI------P--SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFG 141 (250)
T ss_pred hCcc------C--ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHH
Confidence 2211 0 11223444444444444444445555666688986 69999988655433
No 251
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=97.86 E-value=0.00014 Score=72.20 Aligned_cols=91 Identities=10% Similarity=0.034 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHh
Q 013253 284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA 363 (447)
Q Consensus 284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 363 (447)
....++..++..+|.++.|.++||+|||+. +..+..+..+......+..+. +...+.-++.|+
T Consensus 121 ~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~--~~~~~~~~~i~~~~~a~a~~~---------------~~~~~~Rfl~G~ 183 (521)
T KOG0255|consen 121 ALGQSLFFLGVLVGSLIFGPLSDRFGRKPV--LLVSLLLFIIFGILTAFAPNY---------------WMFLIFRFLSGF 183 (521)
T ss_pred HHHHHHHHHHHHHHHhhheehHhhcccHHH--HHHHHHHHHHHHHHHHHhCcH---------------HHHHHHHHHHHh
Confidence 556677889999999999999999999983 555555544444433333332 477888899999
Q ss_pred hhccchhHHHHHHhhcCChhhhccccch
Q 013253 364 CVGIFWPSIMKMRSQYIPEEARSTIMNF 391 (447)
Q Consensus 364 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~ 391 (447)
+.+......+.+..|.++++.|+.+..+
T Consensus 184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~ 211 (521)
T KOG0255|consen 184 FGSGPLTVGFGLVAEIVSPKQRGLALTL 211 (521)
T ss_pred hccchhHHhHhhheeecCcchhhHHHHH
Confidence 9999999999999999999999998877
No 252
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.85 E-value=6.3e-05 Score=71.01 Aligned_cols=159 Identities=19% Similarity=0.163 Sum_probs=109.1
Q ss_pred HHHHHhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchh
Q 013253 46 YSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQY 124 (447)
Q Consensus 46 ~~~~~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~ 124 (447)
+.+..++.++...++.--.+|.+-.+...|..-......-.+.=++.+++.+|+|+-+++..++....+=. .....+|.
T Consensus 380 av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~ 459 (618)
T KOG3762|consen 380 AVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNP 459 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCc
Confidence 33344444444555544448888777777744444433333444468899999999999999999998865 66899999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhH
Q 013253 125 KILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAA 204 (447)
Q Consensus 125 ~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~ 204 (447)
|+.+-.-+++|+..+..+.++.+ |++...+++.....+.........+|-++|+ ++|+.+.++. +-|..|...
T Consensus 460 W~vLPieilqgit~aliWaa~~s-Y~s~vaPp~l~at~Q~l~~g~f~GlG~g~Gs----lIGG~~v~~f--g~~ttf~~~ 532 (618)
T KOG3762|consen 460 WMVLPIEILQGITHALIWAAIIS-YASHVAPPGLRATAQGLLQGIFHGLGKGLGS----LIGGFVVERF--GARTTFRIF 532 (618)
T ss_pred hheeeHHHHHHHHHHHHHHHHHH-HHHhhCCCcchHHHHHHHHHHhcccCcchhh----hhhhhhheee--hhHHHHHHH
Confidence 99999999999999999999866 9888877777666555555555555555555 5555555443 335556655
Q ss_pred HHHHHHH
Q 013253 205 ACFLAIG 211 (447)
Q Consensus 205 ~~~~~~~ 211 (447)
++.+++.
T Consensus 533 giAcl~~ 539 (618)
T KOG3762|consen 533 GIACLVT 539 (618)
T ss_pred HHHHHHH
Confidence 5554443
No 253
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=97.66 E-value=0.029 Score=51.27 Aligned_cols=96 Identities=16% Similarity=0.164 Sum_probs=52.2
Q ss_pred hhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhh-----ccCchhHHHH------HHHHHHHHH-H---
Q 013253 53 DWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLAD-----KQGRKRACVT------YCLTYILSC-I--- 117 (447)
Q Consensus 53 ~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~D-----r~Grr~~l~~------~~~~~~i~~-l--- 117 (447)
.++.. .+|.+.+.-|.|.++.+.. +..+-.. ..-..|.++.| |+||||.-++ +.++..++. .
T Consensus 47 ~GL~~-~iP~lL~ak~vSyt~~a~f-S~ay~P~-sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~ 123 (510)
T KOG3574|consen 47 LGLIG-AIPLLLQAKGVSYTSQAIF-SFAYWPF-SLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRG 123 (510)
T ss_pred hhHhh-hhHHHhcCCCcchhhhhhh-hhhhhHH-HHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcc
Confidence 34444 6678888888888888744 3322211 12236888999 9999996443 333333332 1
Q ss_pred H---hcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHh
Q 013253 118 T---KHSPQYKILMIGRILGGIATSLLFSAFESWLVA 151 (447)
Q Consensus 118 ~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~ 151 (447)
. +-.++...+...-++.-+..+....+...|-+.
T Consensus 124 ~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALt 160 (510)
T KOG3574|consen 124 LGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALT 160 (510)
T ss_pred cccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 0 113344444444455666656555555554433
No 254
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=97.63 E-value=0.002 Score=51.77 Aligned_cols=78 Identities=19% Similarity=0.209 Sum_probs=62.1
Q ss_pred HHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccc
Q 013253 79 IAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRG 157 (447)
Q Consensus 79 ~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~ 157 (447)
++.+....+..++.+.+.++.|.|+.++++.+.+.+-...-+-++.+.++.+-++.|++.+..+.+... ++.+..++.
T Consensus 44 ai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~-ylt~~s~~~ 121 (156)
T PF05978_consen 44 AILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGT-YLTSYSTEE 121 (156)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhH-HHHHcCCHH
Confidence 444444555666778899999999999999999987666667888899999999999999999888755 777763333
No 255
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=97.58 E-value=0.0088 Score=54.45 Aligned_cols=94 Identities=14% Similarity=0.123 Sum_probs=54.8
Q ss_pred CCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHH
Q 013253 279 EEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQL 355 (447)
Q Consensus 279 ~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (447)
++.+. +.++......+++...+.|.+.||+|||+ ..+..++.-....+.-.... .+.++
T Consensus 64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~---~cl~~cily~~scl~k~~~~---------------~~~L~ 125 (354)
T PF05631_consen 64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKK---ACLLFCILYSLSCLTKHSSN---------------YPVLL 125 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH---HHHHHHHHHHHHHHHHhccc---------------cHHHH
Confidence 45544 55555555677888889999999999998 33333332222222111111 13677
Q ss_pred HHHHHHHhhhccchhHHHHH-Hhhc----CChhhhccccc
Q 013253 356 LGFCTFEACVGIFWPSIMKM-RSQY----IPEEARSTIMN 390 (447)
Q Consensus 356 ~~~~l~g~~~~~~~~~~~~~-~~~~----~p~~~r~~~~g 390 (447)
++-++-|++..+.+...-++ +.|+ +|++..+...+
T Consensus 126 ~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~ 165 (354)
T PF05631_consen 126 LGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFS 165 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 77888888888777666554 3343 45444444444
No 256
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=97.55 E-value=0.0007 Score=64.42 Aligned_cols=132 Identities=13% Similarity=0.141 Sum_probs=80.1
Q ss_pred cchhHHHHHHHHHhhhhhhhhhh-hhcccccccc-cCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCC--CcchhHHH
Q 013253 245 SDEKIALLGAIQSLFEGSMYTFV-FLWTPALSPN-DEEIPH---GFIFATFMLASMLGSSLASRLMARSP--PRVESYMQ 317 (447)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g--~~~~~~l~ 317 (447)
.+++...+.....+.....+... ...-| |.++ ..+.+. |.+.+...++..+++++.|+...|.+ +|+ +.
T Consensus 31 t~wrsi~l~~~~sfl~~v~~sI~~~s~wp-Yl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~P---li 106 (488)
T KOG2325|consen 31 TNWRSIYLALLNSFLVAVQFSIYLTSMWP-YLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKP---LI 106 (488)
T ss_pred CchHhHHHHHHHHHHHhhhheEEEeecch-hhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccC---HH
Confidence 34555555555555544433321 22222 3332 122222 88888899999999999999999988 555 77
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccch
Q 013253 318 IVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNF 391 (447)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~ 391 (447)
.+..+..++.++-....... + ...++.+++-++.|++.+ .....-+++++..-.+.|.++++.
T Consensus 107 ~s~ii~~~g~llY~~l~~~~-------~---~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~ 169 (488)
T KOG2325|consen 107 VSFLIAIIGNLLYLALAYVP-------N---GVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAA 169 (488)
T ss_pred HHHHHHHHHHHHHHHHHhcc-------c---chHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHH
Confidence 77777666666543332220 0 023678888888888776 446677888886555555555443
No 257
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.52 E-value=2.4e-06 Score=83.10 Aligned_cols=98 Identities=13% Similarity=0.172 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHh
Q 013253 284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA 363 (447)
Q Consensus 284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 363 (447)
+...+...++..+|+++.|+++||+|||+. +..+..+..++..+....... ...+.+.++-++.|+
T Consensus 49 ~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~--~~~~~~~~~i~~~~~~~~~~~------------~~~~~~~~~R~~~G~ 114 (451)
T PF00083_consen 49 SLLTSSFFIGAIVGALIFGFLADRYGRKPA--LIISALLMIIGSILIAFAPSY------------NNFWMLLIGRFLIGF 114 (451)
T ss_pred HHHHHHHHhhhccccccccccccccccccc--ccccccccccccccccccccc------------ccccccccccccccc
Confidence 566677789999999999999999999984 444444444444433322200 001366777888999
Q ss_pred hhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 364 CVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 364 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+.|...+....++.|..|++.|+...++.+..
T Consensus 115 ~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~ 146 (451)
T PF00083_consen 115 GIGGAYVVSPIYISEIAPPKHRGFLSSLFQLF 146 (451)
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999888776664
No 258
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=97.25 E-value=0.014 Score=55.07 Aligned_cols=106 Identities=14% Similarity=0.301 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHH-H---HhcCchh------HHHHHHHHHHHhhhhhhhhhhhHHHHhhh-cc--cchhhhHHHHHHHH
Q 013253 103 RACVTYCLTYILSC-I---TKHSPQY------KILMIGRILGGIATSLLFSAFESWLVAEH-NK--RGFEQQWLSITFSK 169 (447)
Q Consensus 103 ~~l~~~~~~~~i~~-l---~~~~~~~------~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~~--r~~~~~~~~~~~~~ 169 (447)
|++.++.++..+|. + .+.-++. +.++++-.+.++|.|..-|...+ +.+|. ++ +.++.+. ++
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~-~~~dq~~~~~~~~~~~~----F~- 75 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISP-FGADQYDEDDDSRRDSF----FN- 75 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHH-HHHHCSSTTTTTHHHHH----HH-
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHH-HHHHHhcccchhhhhhh----HH-
Confidence 56777777777774 3 2333333 58889999999999999999866 87776 22 3333332 32
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHHH
Q 013253 170 AIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIIL 216 (447)
Q Consensus 170 ~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~ 216 (447)
....+..+|..++..+..++.++. +|...|.+..+..+++.+...
T Consensus 76 ~fY~~in~G~~~~~~~~~~i~~~~--~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 76 WFYWGINIGSLFSPTLVPYIQQNY--GWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHCS---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHhhcccchhhcccc--chhhhhhHHHHHHHHHHHHHH
Confidence 233345577777777777766544 556778887777776666555
No 259
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.24 E-value=0.0069 Score=58.75 Aligned_cols=126 Identities=12% Similarity=0.095 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHh
Q 013253 284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA 363 (447)
Q Consensus 284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 363 (447)
+..-+++.++.+++.+.++.+.||++..+ .+.......++...+.....+. +..++.-++.|+
T Consensus 84 ~~~~t~F~v~Yii~~~p~~~L~~r~~ls~--~l~~~~~~w~~~~~~~~~~~s~---------------~~~ialr~llGl 146 (495)
T KOG2533|consen 84 GVLDTVFYVGYIIGQFPSGLLGDRFPLSK--GLSVSGILWGLFGFLTAAVHSF---------------PGLIALRFLLGL 146 (495)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHhCChHH--HHHHHHHHHHHHHHHHHHHhhh---------------HHHHHHHHHHHH
Confidence 77788889999999999999999998444 2322222222222222222222 367888999999
Q ss_pred hhccchhHHHHHHhhcCChhhhccccchhhhh--hhHHHHHHHHh--------hcccchHHHHHHHHHHHHHH
Q 013253 364 CVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP--LNIFVCVVLYN--------VDAFPITVMFGMCSIFLLVA 426 (447)
Q Consensus 364 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~--~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~~~ 426 (447)
..+..+|....++...+.+++|+.-+|+.... .+-+.++.+.. ....++.+.|.+.+++.+..
T Consensus 147 ~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~ 219 (495)
T KOG2533|consen 147 FESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVL 219 (495)
T ss_pred HhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHH
Confidence 99999999999999999999999999887753 22333333311 12235566666655554433
No 260
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=97.13 E-value=0.087 Score=49.08 Aligned_cols=40 Identities=10% Similarity=0.102 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccch
Q 013253 352 SLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNF 391 (447)
Q Consensus 352 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~ 391 (447)
++.+....++|+..|-.......+..+.+|++++-.+-.+
T Consensus 344 ~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~ 383 (406)
T KOG1479|consen 344 GWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNL 383 (406)
T ss_pred hHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHH
Confidence 4667788888999887778888899999988886655444
No 261
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=97.12 E-value=0.0015 Score=59.10 Aligned_cols=124 Identities=13% Similarity=0.075 Sum_probs=67.3
Q ss_pred hhhhccccchhhhccCchhHHHHHHHHHHHHH-HH--hcCchhH--HHHHHHHHHHhhhhhhhhhhhHHHHhhh---ccc
Q 013253 85 SMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT--KHSPQYK--ILMIGRILGGIATSLLFSAFESWLVAEH---NKR 156 (447)
Q Consensus 85 ~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~--~~~~~~~--~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r 156 (447)
..-+.++.+++.||+|||+++..+.+++++.. +. ...+|.. .+..+|++...+.+.. ..|..|. .-|
T Consensus 394 efPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqva-----YvYtPEVyPTavR 468 (528)
T KOG0253|consen 394 EFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVA-----YVYTPEVYPTAVR 468 (528)
T ss_pred hCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEE-----EEecCcccchhhh
Confidence 33444479999999999999999999998864 33 3344433 4455666554433322 2244554 223
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHHHHhccccCCC
Q 013253 157 GFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGD 225 (447)
Q Consensus 157 ~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 225 (447)
+...+ .... .+-+|.++.|+++ ... +-.-..+..+.+.+.+++.+...++--|++++
T Consensus 469 atgvG-------tcSs-maRIggI~~p~iA-~~~---e~s~sl~i~vy~~~~ilagIavcffPiEtkGR 525 (528)
T KOG0253|consen 469 ATGVG-------TCSS-MARIGGIFSPVIA-MRA---ELSTSLPIFVYGALFILAGIAVCFFPIETKGR 525 (528)
T ss_pred hcchh-------hhhh-HHhhhhhhhhHHH-HHh---ccceeehHHHHHHHHHHHHHHheeeeeccCCC
Confidence 33222 1111 2336777777776 222 22223455555555555555554232344443
No 262
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.11 E-value=0.0088 Score=55.86 Aligned_cols=148 Identities=13% Similarity=0.055 Sum_probs=79.8
Q ss_pred chhHHHHHHHHHhhhhhhhhhhhhcccc--cccccCCCCc--hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHH
Q 013253 246 DEKIALLGAIQSLFEGSMYTFVFLWTPA--LSPNDEEIPH--GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFV 321 (447)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~ 321 (447)
.++.|.+.+...+.+...-.....|.|. +.++-++.+. -+...++.+..++..+.+-|+.||+|-|.. ..++..
T Consensus 40 y~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Ygs~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a--~llgt~ 117 (480)
T KOG2563|consen 40 YPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYGSSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTA--LLLGTV 117 (480)
T ss_pred chhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHH--HHHHHH
Confidence 3455555555555444322222333333 2333344222 344456778899999999999999998874 444444
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCccccchh--hHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh--hh
Q 013253 322 VSSVSLLLPIVTSFLVAPSNVKSGGISFSGS--LQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP--LN 397 (447)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~--~~ 397 (447)
...+...+=...... ......+ +...+..+.+...-.......-...--+|+++|+++..+..+. .|
T Consensus 118 ln~iGa~Ir~iss~p---------~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LG 188 (480)
T KOG2563|consen 118 LNGIGAWIRLISSLP---------FVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLG 188 (480)
T ss_pred HHHHHHHHhhhccCc---------cccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHH
Confidence 444444332221111 1111112 4455555555554433333333445568999999998776665 56
Q ss_pred HHHHHHH
Q 013253 398 IFVCVVL 404 (447)
Q Consensus 398 ~~~~~~l 404 (447)
..++..+
T Consensus 189 vavg~ll 195 (480)
T KOG2563|consen 189 VAVGFLL 195 (480)
T ss_pred HHHHhhc
Confidence 6666554
No 263
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=96.81 E-value=0.27 Score=44.16 Aligned_cols=90 Identities=20% Similarity=0.237 Sum_probs=64.5
Q ss_pred ccchhhhccCchhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh-----ccc---------
Q 013253 91 IVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIATSLLFSAFESWLVAEH-----NKR--------- 156 (447)
Q Consensus 91 ~~G~l~Dr~Grr~~l~~~~~~~~i~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-----~~r--------- 156 (447)
+.+.+.+++|-|+++.++...+......-+-+.+..++-.-...|++.+..+..-.+ ++++. +.|
T Consensus 77 ~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl~pr~~tlVPa~~~~G~aa~p~W~Skgt-YlT~~g~~ya~~~~~q~~~~~~ 155 (390)
T KOG3097|consen 77 FMPLLIRFLGTKWTMVLAVFPYALYIAANLEPRYETLVPAGLVLGMAAGPIWASKGT-YLTPMGQNYANQRGEQAGDGMK 155 (390)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhcchhHHhhccHHHhhccccccccccCcc-eecHHHHHHHHhhhhhccCcee
Confidence 455889999999999999998887766677888999999999999999988776544 65543 333
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHH
Q 013253 157 GFEQQWLSITFSKAIFLGNGLVAIL 181 (447)
Q Consensus 157 ~~~~~~~~~~~~~~~~~g~~ig~~~ 181 (447)
.+..+.....+.-....|+.+...+
T Consensus 156 ~~ffg~Ffii~~~~qv~gn~issli 180 (390)
T KOG3097|consen 156 VRFFGEFFIIFQCAQVWGNLISSLI 180 (390)
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHH
Confidence 3444445455554555555554443
No 264
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=96.79 E-value=0.58 Score=45.56 Aligned_cols=79 Identities=11% Similarity=0.117 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc------hHHHHHHHHHHHHHHHHHHHHhhc
Q 013253 234 TQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH------GFIFATFMLASMLGSSLASRLMAR 307 (447)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~g~l~dr 307 (447)
....+..+.++|+|.+..++....+.+......-..|-... ++.+..+. |......++..++..++++++.+|
T Consensus 267 ~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~l-k~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~ 345 (491)
T PF03219_consen 267 MSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQL-KQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRR 345 (491)
T ss_pred ccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888877776665555444333222222221 22222111 455556666677777888999999
Q ss_pred CCCcch
Q 013253 308 SPPRVE 313 (447)
Q Consensus 308 ~g~~~~ 313 (447)
+|-+..
T Consensus 346 ~GW~~~ 351 (491)
T PF03219_consen 346 FGWRTA 351 (491)
T ss_pred hhHHHH
Confidence 986653
No 265
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=96.68 E-value=0.66 Score=44.68 Aligned_cols=51 Identities=10% Similarity=0.078 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh--hhHHHHH
Q 013253 352 SLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP--LNIFVCV 402 (447)
Q Consensus 352 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~--~~~~~~~ 402 (447)
+..++..+++|+..|-.......+..+..++++|..+..+..+. .|...|.
T Consensus 373 ~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs 425 (437)
T TIGR00939 373 AYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGA 425 (437)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788999999988888889999999988887776555443 3444443
No 266
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=96.29 E-value=0.49 Score=47.10 Aligned_cols=154 Identities=17% Similarity=0.136 Sum_probs=87.3
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhcc-CchhHHHHHHHHHHHHH-H---Hhc----Cc-----
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLTYILSC-I---TKH----SP----- 122 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~-Grr~~l~~~~~~~~i~~-l---~~~----~~----- 122 (447)
.+.+..+.++++.+...+.-..........+....++.++|-| ||-+++.++.++..++. + .+. .+
T Consensus 58 ~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~ 137 (571)
T KOG1237|consen 58 SNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF 137 (571)
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence 5556677788888775555443443333444455789999975 99999999887776552 1 111 11
Q ss_pred ----------h---hHHHHHHHHHHHhhhhhhhhhhhHHHHhhh-c---ccchhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 013253 123 ----------Q---YKILMIGRILGGIATSLLFSAFESWLVAEH-N---KRGFEQQWLSITFSKAIFLGNGLVAILSGLF 185 (447)
Q Consensus 123 ----------~---~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~-~---~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l 185 (447)
+ ...+..+.-+..+|.|+.-|...+ +-+|- + ++.+.. ....++ ........|..++..+
T Consensus 138 ~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~-fGadQfd~~~~~~~~~--~~~fFn-W~yf~~~~g~l~a~t~ 213 (571)
T KOG1237|consen 138 KPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLA-FGADQFDELDPVEVKG--IPSFFN-WFYFSQNGGALLAQTV 213 (571)
T ss_pred CCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchh-hcccccCccCcchhhC--cccchh-HHHHHHHHHHHHHHHH
Confidence 1 125667777888899998888755 64443 2 111111 001222 2222344566665555
Q ss_pred hhhhhcccccCccchhhhHHHHHHHHHHHHH
Q 013253 186 GNLLVDSFSLGPVAPFDAAACFLAIGMVIIL 216 (447)
Q Consensus 186 ~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~ 216 (447)
..+.-+..+|. .-|.+......++.++..
T Consensus 214 ~vyiq~~~~w~--lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 214 LVYIQDNVGWK--LGFGIPTVLNALAILIFL 242 (571)
T ss_pred HHhhhhcccce--eeccHHHHHHHHHHHHHH
Confidence 55554445554 557676666655544443
No 267
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=96.28 E-value=0.046 Score=55.27 Aligned_cols=148 Identities=18% Similarity=0.237 Sum_probs=79.8
Q ss_pred cccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhc-CCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccc
Q 013253 274 LSPNDEEIPH---GFIFATFMLASMLGSSLASRLMAR-SPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISF 349 (447)
Q Consensus 274 ~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (447)
|+.+..+.+. ..++..+....-+..+++|+++|+ +|+++. +..+.++..++..+....... . ... ..
T Consensus 13 Yl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~t--Il~~~ii~~lG~~llai~a~~---~---~~~-~~ 83 (654)
T TIGR00926 13 YFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKT--ILYLSIVYVVGHALLSFGAIP---S---SGH-PL 83 (654)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHhccCc---c---ccc-ch
Confidence 3333445544 233334444456667788999997 677764 555555555544443321111 0 000 01
Q ss_pred chhhHHHHHHHHHhhhccchhHHHHHHhhcCChhh---hccccchhhhhhhH--HHHHHH----Hhh-c----ccchHHH
Q 013253 350 SGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA---RSTIMNFFRIPLNI--FVCVVL----YNV-D----AFPITVM 415 (447)
Q Consensus 350 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~---r~~~~g~~~~~~~~--~~~~~l----~~~-~----~~~~~~~ 415 (447)
.....++++.+..+|.|..-|...+...|.++++. |.+...++.+..|. +++..+ ... . ..++...
T Consensus 84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~a 163 (654)
T TIGR00926 84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLA 163 (654)
T ss_pred HHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHH
Confidence 11245677888889999999999999999987654 33444444443333 222222 211 1 1246666
Q ss_pred HHHHHHHHHHHHHHh
Q 013253 416 FGMCSIFLLVASVLQ 430 (447)
Q Consensus 416 ~~~~~~~~~~~~~~~ 430 (447)
+.++++..+++.+..
T Consensus 164 F~i~~i~m~ia~lvf 178 (654)
T TIGR00926 164 FGVPAILMILALIVF 178 (654)
T ss_pred HHHHHHHHHHHHHHH
Confidence 766666666555444
No 268
>PF12832 MFS_1_like: MFS_1 like family
Probab=96.24 E-value=0.028 Score=39.14 Aligned_cols=46 Identities=17% Similarity=0.168 Sum_probs=36.6
Q ss_pred hhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcch
Q 013253 267 VFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVE 313 (447)
Q Consensus 267 ~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~ 313 (447)
..-|.|.|.++ .|.+. |.+.++..+..+++.++.|+++||.++++.
T Consensus 19 ~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~ 67 (77)
T PF12832_consen 19 LYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKV 67 (77)
T ss_pred HHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHH
Confidence 45567777764 45555 777778888999999999999999998873
No 269
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=95.42 E-value=0.17 Score=48.86 Aligned_cols=86 Identities=14% Similarity=0.132 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccch
Q 013253 290 FMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFW 369 (447)
Q Consensus 290 ~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 369 (447)
.++..++.+...|.++||+|||.. +........+......+. .. +.++ ..-...+++..+
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~--L~~~~~~~~l~~~~~~~~-~~----------------~~~~-~~~l~g~~~~~~ 130 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVV--LLLPLFGTILPALCLLFQ-GY----------------WFFL-LLGLSGGFSAIF 130 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhh--HHHHHHHHHHhHHHHHHH-HH----------------HHhh-hcccccchhhhh
Confidence 357788889999999999999974 222222221111111111 11 2222 111223445566
Q ss_pred hHHHHHHhhcCChhhhccccchhhhh
Q 013253 370 PSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 370 ~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
....++++|...++.|....|+.+..
T Consensus 131 s~~~a~vadis~~~~R~~~~gll~~~ 156 (463)
T KOG2816|consen 131 SVGFAYVADISSEEERSSSIGLLSGT 156 (463)
T ss_pred hhhhhheeeccchhHHHHHHHHHHHH
Confidence 77889999999999999999887763
No 270
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=95.35 E-value=0.4 Score=42.77 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=46.3
Q ss_pred HHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHhhhhhhhhhh
Q 013253 76 QLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAF 145 (447)
Q Consensus 76 ~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 145 (447)
.+...-.+...+.........||+---+-..+..++.+.+. +.+++++.++-+.+-.+..++.|.-..+-
T Consensus 66 ~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTF 136 (409)
T KOG3880|consen 66 AVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITF 136 (409)
T ss_pred hhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeeh
Confidence 33333334444555556677888654444445555556666 56999999999989888888888776654
No 271
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=95.12 E-value=0.24 Score=39.95 Aligned_cols=88 Identities=10% Similarity=0.086 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhcc
Q 013253 288 ATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGI 367 (447)
Q Consensus 288 ~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 367 (447)
++......+..++.+.+.+++|.|+. +.++.....+-... .+.... +..+.+..+.|++.+.
T Consensus 44 ai~Y~~~~~s~l~~P~iv~~lg~K~s--m~lg~~~y~~y~~~-~~~~~~---------------~~l~~~s~l~G~~~a~ 105 (156)
T PF05978_consen 44 AILYGSFAISCLFAPSIVNKLGPKWS--MILGSLGYAIYIAS-FFYPNS---------------YTLYPASALLGFGAAL 105 (156)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhHHH--HHHHHHHHHHHHHH-HHhhhH---------------HHHHHHHHHHhhhhHH
Confidence 33445566777788889999998873 44443333322221 112222 4678888999999999
Q ss_pred chhHHHHHHhhcCChhhhccccchhh
Q 013253 368 FWPSIMKMRSQYIPEEARSTIMNFFR 393 (447)
Q Consensus 368 ~~~~~~~~~~~~~p~~~r~~~~g~~~ 393 (447)
.|...-.++.+..+++.+++..++.-
T Consensus 106 lW~aqg~ylt~~s~~~~~~~~~~ifw 131 (156)
T PF05978_consen 106 LWTAQGTYLTSYSTEETIGRNTGIFW 131 (156)
T ss_pred hhHhhhHHHHHcCCHHHHhhHHHHHH
Confidence 99999999999999999888776643
No 272
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=94.78 E-value=0.24 Score=47.84 Aligned_cols=107 Identities=15% Similarity=0.086 Sum_probs=65.1
Q ss_pred cccccCCCCchHHHHHHHHHHH--HHHHHHHHHhhcC---CCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccc
Q 013253 274 LSPNDEEIPHGFIFATFMLASM--LGSSLASRLMARS---PPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGIS 348 (447)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~i~~~--~~~~~~g~l~dr~---g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (447)
++++.++.+++.......+..+ ...++.|.++|.+ |.||...+.++..+..+............ .+
T Consensus 15 ~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~-------~s-- 85 (433)
T PF03092_consen 15 FLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE-------SS-- 85 (433)
T ss_pred HHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc-------ch--
Confidence 5577788888766666565544 3468999999985 55555566666655544444333332210 11
Q ss_pred cchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhh--hccccch
Q 013253 349 FSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA--RSTIMNF 391 (447)
Q Consensus 349 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~ 391 (447)
.....+.+++..++.........++..|...++. |+...+.
T Consensus 86 --~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~ 128 (433)
T PF03092_consen 86 --AAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSF 128 (433)
T ss_pred --hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHH
Confidence 1244556677778888888888888888764443 4444433
No 273
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=93.86 E-value=1.3 Score=40.97 Aligned_cols=136 Identities=14% Similarity=-0.035 Sum_probs=60.0
Q ss_pred hcchhHHHHHHHHHhhhhhhhhhhhhcccccccc-cCCCCchHHHHHHHHHHHH--HHHHHHHHhh-----cCCCcchhH
Q 013253 244 ASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN-DEEIPHGFIFATFMLASML--GSSLASRLMA-----RSPPRVESY 315 (447)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~--~~~~~g~l~d-----r~g~~~~~~ 315 (447)
.++++-+.+.+..-+.++.-++. ..-.|.+++. +...+. . +.+.+..-+ -.++...++| |+||||.++
T Consensus 27 ~~d~~~illLl~LYllQGiP~GL-~~~iP~lL~ak~vSyt~-~--a~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWv 102 (510)
T KOG3574|consen 27 KGDRSSILLLLFLYLLQGIPLGL-IGAIPLLLQAKGVSYTS-Q--AIFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWV 102 (510)
T ss_pred hhhhhhHHHHHHHHHHcCCchhH-hhhhHHHhcCCCcchhh-h--hhhhhhhhHHHHHHHHHhhhHHHHHHhhcccccee
Confidence 33444444444445556665663 4477887773 222222 1 111222222 2356667777 999999643
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccc
Q 013253 316 MQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTI 388 (447)
Q Consensus 316 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~ 388 (447)
.- +..+.+..+.++.......-..+...++. ......+++.-+..+.-......+.-....+++-|-+
T Consensus 103 vp-~q~llG~~mllLs~~v~~~~g~ng~~p~v----~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgya 170 (510)
T KOG3574|consen 103 VP-CQYLLGLFMLLLSYLVDRGLGGNGGLPNV----VALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYA 170 (510)
T ss_pred ee-hHHHHHHHHHHHhhCCCcccccCCCCcch----HHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCch
Confidence 33 33333333333222211111101111111 1222233444444443335566666666666664433
No 274
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=93.25 E-value=0.15 Score=47.96 Aligned_cols=133 Identities=14% Similarity=0.132 Sum_probs=78.7
Q ss_pred hhhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhc----CCCcchhHHHHHHHHHHHHHHHHH
Q 013253 259 FEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMAR----SPPRVESYMQIVFVVSSVSLLLPI 331 (447)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr----~g~~~~~~l~~~~~~~~~~~~~~~ 331 (447)
.+++ +..-..|.|.|.++. |.+. +..+...-+.+++.+++.|..+|| +||||- .+........+.+.+..
T Consensus 44 vqf~-wA~elsy~tPyl~~l-Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRP-fI~~~s~~i~~~l~Lig 120 (498)
T KOG0637|consen 44 VQFG-WALELSYLTPYLQSL-GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRP-FILAGSLLIAVSLFLIG 120 (498)
T ss_pred HHHH-HHHHhccccHHHHHc-CCCcccccccccccccccceecccccccccccccccccccc-hHHHhhHHHHHHHhhhh
Confidence 3444 333466777777542 4433 556666667788889999999996 788873 34444445555544433
Q ss_pred Hhhhcc---CCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhcc-ccchhhhh
Q 013253 332 VTSFLV---APSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARST-IMNFFRIP 395 (447)
Q Consensus 332 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~-~~g~~~~~ 395 (447)
...... .++ ...+.-.......++++.+.-+.........-++..|...++++-+ +++.+.+.
T Consensus 121 ~aaDig~~lgd~-~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f 187 (498)
T KOG0637|consen 121 YAADIGLLLGDN-ERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFF 187 (498)
T ss_pred hHhhhhHHhcCC-cccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHH
Confidence 322211 111 0011112223455666777777777788888999999887776666 77665543
No 275
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=93.12 E-value=1.5 Score=38.25 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=16.4
Q ss_pred HHHHHHhcchhHHHHHHHHHhh
Q 013253 238 GAAVAIASDEKIALLGAIQSLF 259 (447)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~ 259 (447)
+...+.+|++..|...+.+...
T Consensus 85 ~s~~~~LK~K~tw~w~~~Yg~w 106 (267)
T PF07672_consen 85 PSYKSILKEKETWKWILIYGIW 106 (267)
T ss_pred chHHHHHccchHHHHHHHHHHH
Confidence 5677889999988876666543
No 276
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=92.61 E-value=0.027 Score=55.69 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=2.9
Q ss_pred ccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCC---C-------
Q 013253 275 SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPS---N------- 341 (447)
Q Consensus 275 ~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~------- 341 (447)
.+++++++. |.+.+..-++..+..++..+..+|.. |+ +++..+..+.+++.++..+-+...++. .
T Consensus 29 iErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~h-rp-rwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~ 106 (539)
T PF03137_consen 29 IERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGH-RP-RWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGN 106 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cc-ceeeecHHHHHHHHHHHhccHhhcCCCccccccccccc
Confidence 356677665 77777778888888888888888753 43 346666666665554433211111000 0
Q ss_pred -------------------------CCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhh
Q 013253 342 -------------------------VKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRI 394 (447)
Q Consensus 342 -------------------------~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 394 (447)
..........+.++++.++.|+|....++...+|+-|.++++..+...|+...
T Consensus 107 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~ 184 (539)
T PF03137_consen 107 SSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYA 184 (539)
T ss_dssp ---------------------------------------------SSS------------------------------
T ss_pred cccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhH
Confidence 00111122346788889999999999999999999999999998888877665
No 277
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=91.17 E-value=15 Score=35.49 Aligned_cols=79 Identities=14% Similarity=0.079 Sum_probs=49.0
Q ss_pred chhhHHHHHHHHHHHhhhhhcchhHhHhHhhcCCC---CcchhHHHHHHHH-hhhhhccccchhhhccCchhHHHHHHHH
Q 013253 36 NSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFG---KGEIGQLFIAGFG-SSMLFGTIVGSLADKQGRKRACVTYCLT 111 (447)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~s---~~~~g~~~~~~~~-~~~l~~~~~G~l~Dr~Grr~~l~~~~~~ 111 (447)
+|..+.-++...+.++...+...++..+.+.+.++ +..+..+-..... .+.++.++-+++.+++.|.+++-..+..
T Consensus 22 ~r~E~~kflpl~Ll~f~I~~ny~~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~ 101 (509)
T COG3202 22 RRYELKKFLPLALLFFCILFNYNLLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGF 101 (509)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 34444445555555555555555666777777665 3444455444444 3445566789999999999988776655
Q ss_pred HHH
Q 013253 112 YIL 114 (447)
Q Consensus 112 ~~i 114 (447)
+..
T Consensus 102 F~~ 104 (509)
T COG3202 102 FLG 104 (509)
T ss_pred HHH
Confidence 543
No 278
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=90.43 E-value=18 Score=35.20 Aligned_cols=48 Identities=10% Similarity=0.092 Sum_probs=31.4
Q ss_pred HHHHHHHhhhccchh-HHHHHHhhcCChhhhccccchhhhhhh--HHHHHH
Q 013253 356 LGFCTFEACVGIFWP-SIMKMRSQYIPEEARSTIMNFFRIPLN--IFVCVV 403 (447)
Q Consensus 356 ~~~~l~g~~~~~~~~-~~~~~~~~~~p~~~r~~~~g~~~~~~~--~~~~~~ 403 (447)
+..+........... ..+++++|.+..++..+-+++.....+ .++++.
T Consensus 133 ~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~ 183 (472)
T TIGR00769 133 LFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGR 183 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444 789999999999998888888776533 344443
No 279
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=90.17 E-value=15 Score=34.84 Aligned_cols=127 Identities=7% Similarity=-0.015 Sum_probs=67.7
Q ss_pred cccccccc-CCCCc----hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 013253 271 TPALSPND-EEIPH----GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSG 345 (447)
Q Consensus 271 ~~~~~~~~-~~~~~----~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (447)
+..|+.+. .+.+. ..++-...-..++..+....+.|..+.|+ .++...+..++...+..+...
T Consensus 26 l~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykp---viil~~~~~i~t~~lll~~~s--------- 93 (412)
T PF01770_consen 26 LTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKP---VIILQALSYIITWLLLLFGTS--------- 93 (412)
T ss_pred chHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHCc---------
Confidence 33444433 55554 23333334456666777888999998787 333333333333333333332
Q ss_pred ccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh------hhHHHHHHHHhhcccchHHH
Q 013253 346 GISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP------LNIFVCVVLYNVDAFPITVM 415 (447)
Q Consensus 346 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~------~~~~~~~~l~~~~~~~~~~~ 415 (447)
.+..-+..+.+|...+ .....++++-..+|+++--++.+..+.+ .+.++|..+....+.++...
T Consensus 94 -----v~~mq~~q~~yg~~~a-~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L 163 (412)
T PF01770_consen 94 -----VLAMQLMQFFYGLATA-AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQL 163 (412)
T ss_pred -----HHHHHHHHHHHHHHHH-HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 1234455555565554 3566778888888888755555555543 33344554444444455443
No 280
>PRK03612 spermidine synthase; Provisional
Probab=90.07 E-value=17 Score=36.08 Aligned_cols=32 Identities=6% Similarity=-0.168 Sum_probs=18.3
Q ss_pred hhcCCCCcchhHHHHHHHHhhhhhccccchhh
Q 013253 65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLA 96 (447)
Q Consensus 65 ~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~ 96 (447)
.-+|-+..+.+.+.++......+++.++|++.
T Consensus 43 ~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~ 74 (521)
T PRK03612 43 YLLGDSVTQFSTVIGLMLFAMGVGALLSKYLL 74 (521)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34566666666665555554445555555554
No 281
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=89.47 E-value=1.6 Score=39.13 Aligned_cols=96 Identities=22% Similarity=0.260 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHh
Q 013253 284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA 363 (447)
Q Consensus 284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 363 (447)
+.......+....+.+..|++.||.|||+. +................... ...+.........|+
T Consensus 42 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~--~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~ 106 (338)
T COG0477 42 GLLLSAFFLGYAIGSLLAGPLGDRYGRRKV--LIIGLLLFLLGTLLLALAPN-------------VGLALLLILRLLQGL 106 (338)
T ss_pred HHHHHHHHHHHHHHhhhhhhccccccchHH--HHHHHHHHHHHHHHHHhCcc-------------chHHHHHHHHHHHHh
Confidence 666677777888888999999999988852 33333221222111111111 001244444555778
Q ss_pred hhccchhHHHHHHhhcCCh-hhhccccchhhh
Q 013253 364 CVGIFWPSIMKMRSQYIPE-EARSTIMNFFRI 394 (447)
Q Consensus 364 ~~~~~~~~~~~~~~~~~p~-~~r~~~~g~~~~ 394 (447)
+.+...+...++..|..|+ +.|+...+....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (338)
T COG0477 107 GGGGLLPVASALLSEWFPEATERGLAVGLVTL 138 (338)
T ss_pred hhHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 8887889999999999998 556666555443
No 282
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=88.56 E-value=5.4 Score=37.61 Aligned_cols=81 Identities=22% Similarity=0.348 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHhhhccchhHHHHHHhhcCChhh---hccccchhhhhhhH--HHHHHH--HhhcccchHHHHHHHHHHHH
Q 013253 352 SLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA---RSTIMNFFRIPLNI--FVCVVL--YNVDAFPITVMFGMCSIFLL 424 (447)
Q Consensus 352 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~---r~~~~g~~~~~~~~--~~~~~l--~~~~~~~~~~~~~~~~~~~~ 424 (447)
..+.+++.+.++|.|..-|...++..|.++++. |.+....+....|. .++... ......++...|.++.+..+
T Consensus 34 ~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~ 113 (372)
T PF00854_consen 34 GLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGML 113 (372)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHH
Confidence 477888999999999999999999999998874 44445555544433 333322 22223567777777766666
Q ss_pred HHHHHhhh
Q 013253 425 VASVLQRR 432 (447)
Q Consensus 425 ~~~~~~~~ 432 (447)
++......
T Consensus 114 ~~~~~f~~ 121 (372)
T PF00854_consen 114 LALIVFLS 121 (372)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 55544433
No 283
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=88.37 E-value=26 Score=34.12 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhhhh
Q 013253 355 LLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLN 397 (447)
Q Consensus 355 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 397 (447)
++..++..+.....+....+.-+++.+|..-|+.+.+.|+..|
T Consensus 409 I~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSN 451 (544)
T PF13000_consen 409 IIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSN 451 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHh
Confidence 3344555555566667888888999999999999888777543
No 284
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=84.31 E-value=39 Score=32.15 Aligned_cols=86 Identities=17% Similarity=0.267 Sum_probs=53.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHH
Q 013253 280 EIPHGFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFC 359 (447)
Q Consensus 280 ~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (447)
+.+.+.+.....+-.++..+...+..+|+.-+.+ ......+...+++...+... .+.-+++.+
T Consensus 58 ~~~t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~R--i~~~~~l~~~g~l~va~~~~---------------v~~~l~Gv~ 120 (402)
T PF02487_consen 58 SVSTGAVLLADILPSLLVKLIAPFFIHRVPYWIR--ILICVALSAAGMLLVAFSPS---------------VWVRLLGVV 120 (402)
T ss_pred cccchHHHHHHHHHHHHHHHHhHhhhhhccchHH--HHHHHHHHHHHHhheeeccc---------------hhHHHHHHH
Confidence 3444666666667788888899999998864432 33333344444443322211 136678888
Q ss_pred HHHhhhccchhHHHHHHhhcCChh
Q 013253 360 TFEACVGIFWPSIMKMRSQYIPEE 383 (447)
Q Consensus 360 l~g~~~~~~~~~~~~~~~~~~p~~ 383 (447)
+.+++.|..-.....+.. .+|+.
T Consensus 121 las~ssg~GE~tfL~lt~-~y~~~ 143 (402)
T PF02487_consen 121 LASLSSGLGEVTFLSLTH-FYGKS 143 (402)
T ss_pred HHhhhhhhhHHHHHHHHH-hcCcc
Confidence 888888888877777755 55554
No 285
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.21 E-value=55 Score=31.76 Aligned_cols=95 Identities=16% Similarity=0.194 Sum_probs=56.6
Q ss_pred hcCCCCcchhHHHHHHHHhhh-hhccccchh---hhccCchhHHHHHHHHHHHHH-HH--hc---C-------------c
Q 013253 66 TYGFGKGEIGQLFIAGFGSSM-LFGTIVGSL---ADKQGRKRACVTYCLTYILSC-IT--KH---S-------------P 122 (447)
Q Consensus 66 ~~g~s~~~~g~~~~~~~~~~~-l~~~~~G~l---~Dr~Grr~~l~~~~~~~~i~~-l~--~~---~-------------~ 122 (447)
..+.+...+-.+.+.....+. +++.+.+.+ .+|+||++.+.++..+..++. +. .. + +
T Consensus 272 ~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~ 351 (461)
T KOG3098|consen 272 KLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTP 351 (461)
T ss_pred hccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCccccccccc
Confidence 344444444444444333333 334444444 567899999999988887654 22 11 1 2
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhHHHHhhh--cccchhhh
Q 013253 123 QYKILMIGRILGGIATSLLFSAFESWLVAEH--NKRGFEQQ 161 (447)
Q Consensus 123 ~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~--~~r~~~~~ 161 (447)
++...++.-++.|++.+........ ++.+. ++|....+
T Consensus 352 ~~~~~~ii~~l~G~~D~~~~t~~~~-ii~~~~~~~~~~~fs 391 (461)
T KOG3098|consen 352 SYYLALIIGFLLGFGDACFNTQRYV-IIALLYPDDRAQAFS 391 (461)
T ss_pred chhHHHHHHHHHhhHHHHHHHHHHH-HHHHHhcCchHHHHH
Confidence 4557778889999999998777633 66665 34444443
No 286
>PRK03612 spermidine synthase; Provisional
Probab=80.79 E-value=41 Score=33.42 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=16.0
Q ss_pred HHHHHHHhhhccchhHHHHHHhhcC
Q 013253 356 LGFCTFEACVGIFWPSIMKMRSQYI 380 (447)
Q Consensus 356 ~~~~l~g~~~~~~~~~~~~~~~~~~ 380 (447)
...++.++..|+..|....+..+..
T Consensus 115 ~~~~~~~~l~G~~~Pl~~~~~~~~~ 139 (521)
T PRK03612 115 VLVLLIGLLIGMEIPLLMRILQRIR 139 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344566777777787776666543
No 287
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=80.09 E-value=7.4 Score=27.57 Aligned_cols=59 Identities=22% Similarity=0.341 Sum_probs=37.7
Q ss_pred hhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHH
Q 013253 268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLL 329 (447)
Q Consensus 268 ~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~ 329 (447)
+-.+|...++ .+.+. +.+.+.+.++..+|.+...++.++.++++ .+..+.....+....
T Consensus 12 TplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~--~~~~~l~~~~~~~~~ 73 (85)
T PF06779_consen 12 TPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRR--LLRAGLLLTVLSTAA 73 (85)
T ss_pred HhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH--HHHHHHHHHHHHHHH
Confidence 3345655443 34444 77888889999999999999988754444 344444444444443
No 288
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.09 E-value=3.1 Score=42.32 Aligned_cols=127 Identities=15% Similarity=0.163 Sum_probs=77.1
Q ss_pred ccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhcc--------------
Q 013253 275 SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLV-------------- 337 (447)
Q Consensus 275 ~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------------- 337 (447)
.++.++.+. |.+...+-++..+......+...|..|-+ ++..+..+.++..++..+-+...
T Consensus 123 iErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr--~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~ 200 (735)
T KOG3626|consen 123 IERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPR--WIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSV 200 (735)
T ss_pred hhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccc--eeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccc
Confidence 345566654 56656666777777777778877765444 35555555555444433211100
Q ss_pred -CC------------------CCCCC----CccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhh
Q 013253 338 -AP------------------SNVKS----GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRI 394 (447)
Q Consensus 338 -~~------------------~~~~~----~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 394 (447)
.+ ++.+. .+......+++.+.++.|+|....++...+|+-|.+.++.-....|+...
T Consensus 201 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~ 280 (735)
T KOG3626|consen 201 ENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYS 280 (735)
T ss_pred cCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHH
Confidence 00 00000 11111234677888999999999999999999999999988877887665
Q ss_pred h--hhHHHHHH
Q 013253 395 P--LNIFVCVV 403 (447)
Q Consensus 395 ~--~~~~~~~~ 403 (447)
. .|+++|..
T Consensus 281 ~~~lGPaiGfl 291 (735)
T KOG3626|consen 281 MAILGPAIGFL 291 (735)
T ss_pred HHHhhhHHHHH
Confidence 3 45544443
No 289
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=76.13 E-value=9.2 Score=33.81 Aligned_cols=79 Identities=10% Similarity=0.150 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHh
Q 013253 284 GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEA 363 (447)
Q Consensus 284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 363 (447)
|.++....-..++...+.|.+.||-|||+. .+..++.-+..++ ..+. +... +.+++-.+-|+
T Consensus 75 gqLfiaGfgSsmLFGtivgSLaDkqGRKra---cvtycitYiLsCi---TKhS--------pqYk----VLmVGR~LGGi 136 (454)
T KOG4332|consen 75 GQLFIAGFGSSMLFGTIVGSLADKQGRKRA---CVTYCITYILSCI---TKHS--------PQYK----VLMVGRVLGGI 136 (454)
T ss_pred ceeeecccchHHHHHHHHHHHHhhhccccc---eeeehHHHHHHHH---hhcC--------CceE----EEeehhhhhhH
Confidence 444433223355556677889999999993 3333332222222 1111 1111 45666777777
Q ss_pred hhccchhHHHH-HHhhcC
Q 013253 364 CVGIFWPSIMK-MRSQYI 380 (447)
Q Consensus 364 ~~~~~~~~~~~-~~~~~~ 380 (447)
..+..+...-+ ++.|+.
T Consensus 137 aTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 137 ATSLLFSAFESWLIAEHN 154 (454)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 77766655544 456655
No 290
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=75.82 E-value=1.1 Score=41.11 Aligned_cols=43 Identities=12% Similarity=0.097 Sum_probs=3.6
Q ss_pred hhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhh
Q 013253 352 SLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRI 394 (447)
Q Consensus 352 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 394 (447)
+..++..+++|+..|-.......+..+..++++|..+-.+..+
T Consensus 249 ~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~ 291 (309)
T PF01733_consen 249 AWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSF 291 (309)
T ss_dssp ------------------HHHH---------------------
T ss_pred HHHHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHH
Confidence 4557778888999998889999999999998888776555444
No 291
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=75.07 E-value=49 Score=31.91 Aligned_cols=107 Identities=18% Similarity=0.073 Sum_probs=66.7
Q ss_pred hhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH----HHhcCc-------hhHHHHHHHHH
Q 013253 65 STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC----ITKHSP-------QYKILMIGRIL 133 (447)
Q Consensus 65 ~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~----l~~~~~-------~~~~l~~~r~l 133 (447)
..-|+++.++|..=+.+.+.+..+.....++.+|+|..|.=.++........ ...+.+ +...++.+-++
T Consensus 286 ~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~ 365 (432)
T PF06963_consen 286 KSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIAL 365 (432)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHH
Confidence 4449999999988888888888888889999999999998888866554321 122222 22233333344
Q ss_pred HHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHH
Q 013253 134 GGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIF 172 (447)
Q Consensus 134 ~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~ 172 (447)
.-+|.=...-...- ++.|. ++|+...+......+..-.
T Consensus 366 SR~GLW~fDL~~~q-i~Qe~V~~~~Rg~v~gvq~sl~~lf~l 406 (432)
T PF06963_consen 366 SRIGLWSFDLAVTQ-IMQENVPESERGAVSGVQNSLQSLFEL 406 (432)
T ss_pred HHHHHHhhhHHHHH-hhcccCCHHHhhHHHHHHHHHHHHHHH
Confidence 44443334334333 55665 5577766666665554333
No 292
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=72.78 E-value=68 Score=28.38 Aligned_cols=70 Identities=17% Similarity=0.213 Sum_probs=38.1
Q ss_pred HHHHHHHHhhhhhcc-ccchhhhc-cCchhHHHH----HHHHHHHHHHHh--cCc----hhHHHHHHHHHHHhhhhhhhh
Q 013253 76 QLFIAGFGSSMLFGT-IVGSLADK-QGRKRACVT----YCLTYILSCITK--HSP----QYKILMIGRILGGIATSLLFS 143 (447)
Q Consensus 76 ~~~~~~~~~~~l~~~-~~G~l~Dr-~Grr~~l~~----~~~~~~i~~l~~--~~~----~~~~l~~~r~l~G~~~~~~~~ 143 (447)
.++.+.+..+.+.+| ..|.+... +.||+-+.. +.++..++.+++ ..+ +...+++.-++.|.+.=+.++
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 344556666666666 56777653 456655442 233444444332 221 355677777787776555544
Q ss_pred hh
Q 013253 144 AF 145 (447)
Q Consensus 144 ~~ 145 (447)
..
T Consensus 224 Vi 225 (267)
T PF07672_consen 224 VI 225 (267)
T ss_pred HH
Confidence 43
No 293
>COG4769 Predicted membrane protein [Function unknown]
Probab=69.61 E-value=20 Score=28.78 Aligned_cols=48 Identities=13% Similarity=0.101 Sum_probs=33.7
Q ss_pred hhhhccccchhhhccCchhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 013253 85 SMLFGTIVGSLADKQGRKRACVTYCLTYILSCITKHSPQYKILMIGRILGGIA 137 (447)
Q Consensus 85 ~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~l~~~~~~~~~l~~~r~l~G~~ 137 (447)
+.+.+...=++..++|+|..=.+ ++++..++.+|..++.+.+++.+-.
T Consensus 86 G~i~S~L~m~~l~~f~~k~~S~l-----giS~mGaF~hNl~QLivas~Lv~~~ 133 (181)
T COG4769 86 GAILSTLFMYFLYQFGPKYLSLL-----GISVMGAFTHNLGQLIVASFLVFTT 133 (181)
T ss_pred HHHHHHHHHHHHHHcCCceEeee-----ehhhHHHHHHhHHHHHHHHHHHhcc
Confidence 33444455677889998875222 3445668899999999999988754
No 294
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.87 E-value=8 Score=28.36 Aligned_cols=21 Identities=38% Similarity=0.436 Sum_probs=15.6
Q ss_pred HHHHHhhhhhccccchhhhcc
Q 013253 79 IAGFGSSMLFGTIVGSLADKQ 99 (447)
Q Consensus 79 ~~~~~~~~l~~~~~G~l~Dr~ 99 (447)
+.-++.+.+.+...||+.|||
T Consensus 49 ssefIsGilVGa~iG~llD~~ 69 (116)
T COG5336 49 SSEFISGILVGAGIGWLLDKF 69 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445566777777889999986
No 295
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria.
Probab=60.75 E-value=1.3e+02 Score=30.54 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhhhhcchhHhHhHhhcCCCCcc
Q 013253 42 YLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGE 73 (447)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~ 73 (447)
.+.+..+......+.++++|...++-|.|..+
T Consensus 116 ~l~~i~~~f~~Y~~~g~~~Pg~~~h~g~~~~~ 147 (613)
T TIGR02123 116 ALPILALVFLLYALFGPWLPGILRHRGYSLEQ 147 (613)
T ss_pred HHHHHHHHHHHHHHHHhhCchhhccCCCCHHH
Confidence 33344444445555577777777665555433
No 296
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=59.52 E-value=1.1e+02 Score=25.83 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 013253 284 GFIFATFMLASMLGSSLASRLMARSPP 310 (447)
Q Consensus 284 ~~~~~~~~i~~~~~~~~~g~l~dr~g~ 310 (447)
......++++.++.-+..+...++.++
T Consensus 153 ~l~m~~FgLGT~p~ll~~~~~~~~l~~ 179 (199)
T PF13386_consen 153 ALLMLAFGLGTLPALLLAGLLAGKLSR 179 (199)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 455566777776666666666655543
No 297
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=57.07 E-value=2e+02 Score=28.20 Aligned_cols=104 Identities=9% Similarity=-0.000 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCC-----------C-cccc-----chhhHH
Q 013253 293 ASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS-----------G-GISF-----SGSLQL 355 (447)
Q Consensus 293 ~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~-----~~~~~~ 355 (447)
++++...+..++.++..+++ +...........+.+.++...+....-|+. + ...+ .-|...
T Consensus 74 ~avif~~iy~kl~~~lt~~~--vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s 151 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREK--VFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYS 151 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHH--HHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHH
Confidence 56777888889999886665 233333333333333322222111000111 1 1111 113434
Q ss_pred HHHHHHHhhhccchh-HHHHHHhhcCChhhhccccchhhhhhhH
Q 013253 356 LGFCTFEACVGIFWP-SIMKMRSQYIPEEARSTIMNFFRIPLNI 398 (447)
Q Consensus 356 ~~~~l~g~~~~~~~~-~~~~~~~~~~p~~~r~~~~g~~~~~~~~ 398 (447)
....+...--..... ..+..++|....++..+-+++++...|.
T Consensus 152 ~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni 195 (509)
T COG3202 152 LFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANI 195 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHH
Confidence 444444433333333 6788999999999988888887776443
No 298
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=55.19 E-value=2.1e+02 Score=27.79 Aligned_cols=32 Identities=6% Similarity=0.210 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHhhhccchhHHHHHHhhcCChhh
Q 013253 352 SLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA 384 (447)
Q Consensus 352 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~ 384 (447)
+..+...++.|++.+........+++.. |++.
T Consensus 107 ~~~~~~v~~~g~~~~~~q~s~~gla~~f-p~~~ 138 (437)
T TIGR00939 107 VTTMASVVIINSGMALLQGSLFGLAGVF-PSTY 138 (437)
T ss_pred HHHHHHHHHHHhhhhhhcccchhhcccC-CHHH
Confidence 4556666677788887777778877754 5554
No 299
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=53.02 E-value=2.4e+02 Score=27.87 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=22.1
Q ss_pred HHHHHHhhcCChhhhccccchhhhhhh
Q 013253 371 SIMKMRSQYIPEEARSTIMNFFRIPLN 397 (447)
Q Consensus 371 ~~~~~~~~~~p~~~r~~~~g~~~~~~~ 397 (447)
..+.+++|..+.++..+-+++.....|
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~gan 190 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGAN 190 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 568999999999998888888776533
No 300
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=52.22 E-value=1.1e+02 Score=30.52 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013253 287 FATFMLASMLGSSLASRLMARSPPRV 312 (447)
Q Consensus 287 ~~~~~i~~~~~~~~~g~l~dr~g~~~ 312 (447)
.....+.+.++...++++-..++.++
T Consensus 303 i~~y~~~~~iaGy~S~~~yk~~~g~~ 328 (521)
T PF02990_consen 303 IILYALTSFIAGYVSARLYKSFGGKK 328 (521)
T ss_pred HHHHHHHhhHHHHHHHHHHHHcCCCc
Confidence 34455667777777777777776544
No 301
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=45.60 E-value=36 Score=23.67 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHhhcccCccCC
Q 013253 5 FYLVFGALGAVVAALELSKTNKDRI 29 (447)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (447)
--.++|+++++++++++.+......
T Consensus 30 ILivLVIIiLlImlfqsSS~~~~s~ 54 (85)
T PF10717_consen 30 ILIVLVIIILLIMLFQSSSNGNSSS 54 (85)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCC
Confidence 3578999999999999987665544
No 302
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=43.42 E-value=1.7e+02 Score=26.10 Aligned_cols=34 Identities=9% Similarity=0.247 Sum_probs=15.2
Q ss_pred hhhhhHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 013253 393 RIPLNIFVCVVLYNVDAFPITVMFGMCSIFLLVA 426 (447)
Q Consensus 393 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 426 (447)
+...+.+.+..+...........+...++..++.
T Consensus 82 QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liii 115 (269)
T PF06800_consen 82 QLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIII 115 (269)
T ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHH
Confidence 3345556665553332223344444444444433
No 303
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=39.75 E-value=96 Score=29.24 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=28.5
Q ss_pred HHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhh
Q 013253 355 LLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRI 394 (447)
Q Consensus 355 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 394 (447)
+++....-+|.=+..+...-..+|..|+++|..+.|.-+.
T Consensus 390 ~agVaaaR~GLW~fDlAVtqimQe~VpEseR~vv~gvqns 429 (503)
T KOG2601|consen 390 FAGVAAARLGLWMFDLAVTQIMQETVPESERCVVFGVQNS 429 (503)
T ss_pred HHHHHHHHhhHHhccHHHHHHHHHhcchhhhhhhHhHHHH
Confidence 3444444444444557778889999999999999998664
No 304
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=37.10 E-value=1.8e+02 Score=21.96 Aligned_cols=7 Identities=29% Similarity=0.145 Sum_probs=2.7
Q ss_pred hhhhHHH
Q 013253 200 PFDAAAC 206 (447)
Q Consensus 200 ~f~~~~~ 206 (447)
.+.+.+.
T Consensus 74 a~liv~~ 80 (121)
T PF07332_consen 74 AFLIVAG 80 (121)
T ss_pred HHHHHHH
Confidence 3433333
No 305
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=36.11 E-value=2.5e+02 Score=23.20 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhhcccCcc
Q 013253 6 YLVFGALGAVVAALELSKTNKD 27 (447)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~ 27 (447)
+--.+|+.++-..++|-.++++
T Consensus 63 ~~iaGGllLl~ia~~ml~~~~~ 84 (176)
T TIGR03717 63 LKLIGGLLLLWIGWKLLLEEEE 84 (176)
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 3456778888888888654433
No 306
>PRK11469 hypothetical protein; Provisional
Probab=34.68 E-value=2.5e+02 Score=23.50 Aligned_cols=108 Identities=6% Similarity=-0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhcccCccCCCCCcccchhhHHHHHHHHHHHhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhh
Q 013253 6 YLVFGALGAVVAALELSKTNKDRINTSSAFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSS 85 (447)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~ 85 (447)
+.+.+.++.+=.-|-.+.-++++.++++..++...+-.....+....|.+..-+- ..-.|.+.-.............
T Consensus 71 ~i~~~lL~~lG~~mi~e~~~~~~~~~~~~~~~~~~~~~l~LaiAtSiDAlavGi~---~~~~g~~~~~~~~~ig~~s~~~ 147 (188)
T PRK11469 71 WIAFVLLIFLGGRMIIEGFRGADDEDEEPRRRHGFWLLVTTAIATSLDAMAVGVG---LAFLQVNIIATALAIGCATLIM 147 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHH
Q ss_pred hhhcc-ccchhhhccCchhHHHHHHHHHHHHH
Q 013253 86 MLFGT-IVGSLADKQGRKRACVTYCLTYILSC 116 (447)
Q Consensus 86 ~l~~~-~~G~l~Dr~Grr~~l~~~~~~~~i~~ 116 (447)
...+. ++.++.+++|||.-++-+.++..++.
T Consensus 148 ~~~G~~lG~~~g~~~g~~a~~lgG~iLI~iGi 179 (188)
T PRK11469 148 STLGMMVGRFIGSIIGKKAEILGGLVLIGIGV 179 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 307
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=33.53 E-value=84 Score=25.17 Aligned_cols=29 Identities=10% Similarity=0.031 Sum_probs=21.3
Q ss_pred hHHHHHHhhcCChhhhccccchhhhhhhH
Q 013253 370 PSIMKMRSQYIPEEARSTIMNFFRIPLNI 398 (447)
Q Consensus 370 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~ 398 (447)
.+.|...+...+++..|+..|+-.+-.|.
T Consensus 113 GisYGilSaSWD~~r~GSllG~~e~~~N~ 141 (153)
T PF11947_consen 113 GISYGILSASWDPEREGSLLGWEEFKRNW 141 (153)
T ss_pred hhhhhhcccccCCCCCCCcccHHHHHHhH
Confidence 55677778888888889988886655443
No 308
>PF04346 EutH: Ethanolamine utilisation protein, EutH; InterPro: IPR007441 EutH is a bacterial membrane protein whose molecular function is unknown. It has been suggested that it may act as an ethanolamine transporter, responsible for carrying ethanolamine from the periplasm to the cytoplasm [].; GO: 0006810 transport, 0016021 integral to membrane
Probab=32.96 E-value=3.1e+02 Score=25.48 Aligned_cols=58 Identities=9% Similarity=0.056 Sum_probs=40.2
Q ss_pred hhhhhccccchhhhccCchhHHHHHHHHHHH--HH--HHhcCchhHHHHHHHHHHHhhhhhh
Q 013253 84 SSMLFGTIVGSLADKQGRKRACVTYCLTYIL--SC--ITKHSPQYKILMIGRILGGIATSLL 141 (447)
Q Consensus 84 ~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i--~~--l~~~~~~~~~l~~~r~l~G~~~~~~ 141 (447)
...+.+++.+++.++.|--+.+..+.++..= +. ...+++|......+..+.|.-.|..
T Consensus 58 la~~l~~vi~Pl~~~~GaDPamfa~tiLA~DMGGY~LA~~la~~~~~~~fsG~ilgsmlG~T 119 (354)
T PF04346_consen 58 LAAFLSPVIGPLFQAIGADPAMFAGTILANDMGGYQLAMELAQDPEAGIFSGLILGSMLGAT 119 (354)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHhhhcCcCHHHHHHHcCChhhHHHHHHHHHHhhccc
Confidence 3556677788889999999988887776632 32 3467777777776766666554443
No 309
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=32.40 E-value=3.7e+02 Score=24.07 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=29.8
Q ss_pred hHhhcCCCCcchhHHHHHHHHhhhhhccccc---------hhhhccCchhHH
Q 013253 63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVG---------SLADKQGRKRAC 105 (447)
Q Consensus 63 i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G---------~l~Dr~Grr~~l 105 (447)
..++.|.++..-..++..+-....+..++.| +-.||+|||+..
T Consensus 43 fltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~w 94 (412)
T KOG4830|consen 43 FLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMSW 94 (412)
T ss_pred HHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceeee
Confidence 3467788887777776666666666666655 345799999863
No 310
>PF11872 DUF3392: Protein of unknown function (DUF3392); InterPro: IPR021813 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=31.68 E-value=1.2e+02 Score=22.46 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=21.0
Q ss_pred HHhcchhHHHHHHHHHhhhhhhhhhhhhccccccccc
Q 013253 242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPND 278 (447)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (447)
+..++..+..-.......+...|+....|...++.+.
T Consensus 43 r~l~~~~Fi~Rt~~FIlicAFGYGll~v~~tP~l~~~ 79 (106)
T PF11872_consen 43 RLLSGYHFILRTLAFILICAFGYGLLIVWLTPLLARQ 79 (106)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555445555555666776666666666543
No 311
>COG2119 Predicted membrane protein [Function unknown]
Probab=31.22 E-value=3.1e+02 Score=22.82 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=19.5
Q ss_pred ccchhhhccCchhHHHHHHHHHHH
Q 013253 91 IVGSLADKQGRKRACVTYCLTYIL 114 (447)
Q Consensus 91 ~~G~l~Dr~Grr~~l~~~~~~~~i 114 (447)
.+.++++|+..|++-..+.+++.+
T Consensus 153 ~G~~ia~ki~~r~l~~~aallFl~ 176 (190)
T COG2119 153 LGKLIAGKLPERLLRFIAALLFLI 176 (190)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHH
Confidence 466799999999998888777754
No 312
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=31.04 E-value=1.8e+02 Score=25.55 Aligned_cols=45 Identities=11% Similarity=0.064 Sum_probs=25.2
Q ss_pred CCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH
Q 013253 70 GKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC 116 (447)
Q Consensus 70 s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~ 116 (447)
+.++...+....-+...+.+.+. +-||.++|+.+.....+.++..
T Consensus 95 ~~~~a~~l~~~~Pi~~~lla~~~--l~Ek~~~~~~l~~~~~~~Gv~l 139 (256)
T TIGR00688 95 SSLEVSLGYLINPLVMVALGRVF--LKERISRFQFIAVIIATLGVIS 139 (256)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHH
Confidence 44444444333333333332222 5689999998877777666654
No 313
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=30.79 E-value=1.6e+02 Score=27.73 Aligned_cols=47 Identities=13% Similarity=0.244 Sum_probs=33.8
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccc--hhhhccCchh
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVG--SLADKQGRKR 103 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G--~l~Dr~Grr~ 103 (447)
.|.+-++.+++|+|+-+.|.++......+.+..|++- ..+.+.++.+
T Consensus 294 ~Pil~Pi~~~~GIDPvhfGvv~v~Nl~IGliTPPvG~~Lfv~s~V~~~~ 342 (379)
T COG1593 294 TPILLPIAAALGIDPVHFGVVFVLNLSIGLITPPVGMVLFVASAVGKVP 342 (379)
T ss_pred HHHHHHHHHHhCCCceeeHHHHHHHHHhhCCCCCcchhHHHHHhhcCCC
Confidence 7877788899999999999998888777766555432 2344444433
No 314
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=30.76 E-value=68 Score=17.26 Aligned_cols=16 Identities=13% Similarity=0.164 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHH
Q 013253 3 MFFYLVFGALGAVVAA 18 (447)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (447)
|.||+=+.|..+.|.+
T Consensus 1 MWYfaWilG~~lA~~~ 16 (28)
T PF08173_consen 1 MWYFAWILGVLLACAF 16 (28)
T ss_pred ChhHHHHHHHHHHHHH
Confidence 5778877777777765
No 315
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=30.31 E-value=4.7e+02 Score=24.67 Aligned_cols=78 Identities=12% Similarity=0.016 Sum_probs=51.5
Q ss_pred hHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHH-HH--HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHHHh
Q 013253 75 GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYIL-SC--ITKHSPQYKILMIGRILGGIATSLLFSAFESWLVA 151 (447)
Q Consensus 75 g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i-~~--l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~ 151 (447)
|..-.+..+.|.+.....|.+--++.|+.-++++..-... |+ +++.+++.|..+++-++.+.-.....+.+.. -++
T Consensus 274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~-~iA 352 (433)
T KOG3810|consen 274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATF-QIA 352 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHH-HHH
Confidence 3444555566777777899988888877555554443322 22 5678899998888888887777777666644 344
Q ss_pred hh
Q 013253 152 EH 153 (447)
Q Consensus 152 ~~ 153 (447)
+.
T Consensus 353 ~n 354 (433)
T KOG3810|consen 353 RN 354 (433)
T ss_pred Hh
Confidence 33
No 316
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=30.06 E-value=5.2e+02 Score=25.03 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=27.5
Q ss_pred hHHHHHHhhcCChhhhccccchhhhh-hhHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHh
Q 013253 370 PSIMKMRSQYIPEEARSTIMNFFRIP-LNIFVCVVLYNVDAFPITVMFGMCSIFLLVASVLQ 430 (447)
Q Consensus 370 ~~~~~~~~~~~p~~~r~~~~g~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
.....|.........|+..++..-.. ++.+- .++ . ...+..++...+++++++.++.
T Consensus 364 ~Li~~Y~~~vl~~~k~~~~~~~~L~~LY~~Ly-~lL-q--~EdyALL~GSl~LF~iLa~vM~ 421 (430)
T PF06123_consen 364 GLISLYLSSVLKSWKRGLIFAGLLAALYGFLY-VLL-Q--SEDYALLMGSLLLFIILALVMY 421 (430)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH-HHH-H--hhhHHHHHHHHHHHHHHHHHHh
Confidence 44566677777777777666543222 22211 111 1 1244455555555555554443
No 317
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=29.77 E-value=5.5e+02 Score=26.01 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=24.2
Q ss_pred hHHHHHHHHHhhhccchhHHHHHHhhcCCh
Q 013253 353 LQLLGFCTFEACVGIFWPSIMKMRSQYIPE 382 (447)
Q Consensus 353 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~ 382 (447)
.+...+.+..+|.|..-|...+.-.|.+++
T Consensus 154 ~~~~~l~lia~G~gg~r~~~~~fGadQfd~ 183 (571)
T KOG1237|consen 154 VLYGALYLIALGAGGIRPCLLAFGADQFDE 183 (571)
T ss_pred HHHHHHHHheeccCCCCCcchhhcccccCc
Confidence 556666777778888889999999999983
No 318
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=29.56 E-value=72 Score=17.88 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHH
Q 013253 3 MFFYLVFGALGAVVAA 18 (447)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (447)
|.||+=+.|+.+.|.+
T Consensus 1 MWYFaWiLG~lLAcAF 16 (37)
T COG4890 1 MWYFAWILGLLLACAF 16 (37)
T ss_pred ChhHHHHHHHHHHHHH
Confidence 5688888888888876
No 319
>PRK11588 hypothetical protein; Provisional
Probab=28.29 E-value=6e+02 Score=25.21 Aligned_cols=37 Identities=8% Similarity=0.070 Sum_probs=19.6
Q ss_pred cchhhhccCchhHHHH--HHHHHHHH-HHHhcCchhHHHH
Q 013253 92 VGSLADKQGRKRACVT--YCLTYILS-CITKHSPQYKILM 128 (447)
Q Consensus 92 ~G~l~Dr~Grr~~l~~--~~~~~~i~-~l~~~~~~~~~l~ 128 (447)
.+++.+|++.|..+++ .+++++++ ...+.+.....++
T Consensus 136 i~~l~~k~~~~~~llIpil~~lFsl~G~~~G~~Ee~i~f~ 175 (506)
T PRK11588 136 ILALIRKTRGNEILFIPVLFILFSLGGAVFGMGEEAIAFA 175 (506)
T ss_pred HHHHHHHhCCCcEEeHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4677888876654433 34444443 3445555444443
No 320
>PRK11715 inner membrane protein; Provisional
Probab=28.26 E-value=5.6e+02 Score=24.86 Aligned_cols=22 Identities=14% Similarity=-0.083 Sum_probs=14.5
Q ss_pred hHHHHHHhhcCChhhhccccch
Q 013253 370 PSIMKMRSQYIPEEARSTIMNF 391 (447)
Q Consensus 370 ~~~~~~~~~~~p~~~r~~~~g~ 391 (447)
.....|.........|+..++.
T Consensus 370 ~li~~Y~~~vl~~~k~g~~~~~ 391 (436)
T PRK11715 370 LLIGFYLSAVLRSWKRGLLFAA 391 (436)
T ss_pred HHHHHHHHHHHhcchHHHHHHH
Confidence 3455667777777777776654
No 321
>PRK14749 hypothetical protein; Provisional
Probab=27.61 E-value=87 Score=17.00 Aligned_cols=17 Identities=18% Similarity=0.299 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 013253 3 MFFYLVFGALGAVVAAL 19 (447)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (447)
|-||+=+.|+.+.|++=
T Consensus 1 MWYfaWiLG~~lAc~f~ 17 (30)
T PRK14749 1 MWYLLWFVGILLMCSLS 17 (30)
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 45788788887777653
No 322
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=27.51 E-value=5.6e+02 Score=24.57 Aligned_cols=35 Identities=9% Similarity=0.115 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhc
Q 013253 352 SLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARS 386 (447)
Q Consensus 352 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~ 386 (447)
+..+....+.+.+.+..+...+...++.-++-.++
T Consensus 118 ~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqa 152 (406)
T KOG1479|consen 118 LVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQA 152 (406)
T ss_pred HHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHH
Confidence 45566667777777777777777777664443344
No 323
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=27.05 E-value=1.2e+02 Score=19.22 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=17.7
Q ss_pred hhhhccccchhhhc-cCchhHHHHHHHHHHH
Q 013253 85 SMLFGTIVGSLADK-QGRKRACVTYCLTYIL 114 (447)
Q Consensus 85 ~~l~~~~~G~l~Dr-~Grr~~l~~~~~~~~i 114 (447)
..+.+...|+..|+ ++.++...+..++.++
T Consensus 13 ~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~ 43 (55)
T PF09527_consen 13 PILVGFFLGYWLDKWFGTSPWFTLIGLLLGI 43 (55)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 33445567887775 5665665555554443
No 324
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=26.56 E-value=4.8e+02 Score=23.54 Aligned_cols=76 Identities=18% Similarity=0.286 Sum_probs=35.6
Q ss_pred HHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCchHHHHHHHHHHH-HHHHHHHHHhhcCCCcchhHHHHHH
Q 013253 242 AIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASM-LGSSLASRLMARSPPRVESYMQIVF 320 (447)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~g~l~dr~g~~~~~~l~~~~ 320 (447)
+..|+|+.+.............+. ...|.|. ++...+.+.-+-++.+.++ +|.+ .+-||+. +...+.+..
T Consensus 64 ~~~~~p~~~~~~~l~a~li~~nW~-lfiWAvn---~g~~leaSLGY~InPL~~VllG~l---flkErls--~~Q~iAV~l 134 (293)
T COG2962 64 QLLKQPKTLLMLALTALLIGLNWW-LFIWAVN---NGHVLEASLGYFINPLVNVLLGRL---FLKERLS--RLQWIAVGL 134 (293)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHH-HhheecC---CCchhHHHhHHHHHHHHHHHHHHH---HHHhhcc--HHHHHHHHH
Confidence 356677766655554444443333 3445442 3333444555545554433 3333 3567773 322344444
Q ss_pred HHHHHH
Q 013253 321 VVSSVS 326 (447)
Q Consensus 321 ~~~~~~ 326 (447)
...++.
T Consensus 135 A~~GV~ 140 (293)
T COG2962 135 AAAGVL 140 (293)
T ss_pred HHHHHH
Confidence 444433
No 325
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=26.50 E-value=88 Score=17.14 Aligned_cols=17 Identities=12% Similarity=0.008 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 013253 3 MFFYLVFGALGAVVAAL 19 (447)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (447)
|.||+=+.|..+.|.+-
T Consensus 1 MWYfaWilG~~lA~~~~ 17 (30)
T TIGR02106 1 MWYFAWILGTLLACAFG 17 (30)
T ss_pred ChhHHHHHHHHHHHHHH
Confidence 56888777777777653
No 326
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=26.22 E-value=1.3e+02 Score=26.05 Aligned_cols=61 Identities=10% Similarity=0.040 Sum_probs=31.8
Q ss_pred cchhhhccCchh--------HHHHHHHHHHHH--HHHhcC--chhHHHHHHHHHHHhhhhhhhhhhhHHHHhh
Q 013253 92 VGSLADKQGRKR--------ACVTYCLTYILS--CITKHS--PQYKILMIGRILGGIATSLLFSAFESWLVAE 152 (447)
Q Consensus 92 ~G~l~Dr~Grr~--------~l~~~~~~~~i~--~l~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~ 152 (447)
.+.+.||||-+. +++++.++..+- .+..+. -+.-.=.....-.|+|++..+.++...+...
T Consensus 127 laiI~ekYGldSpEgrGVl~~Yi~GTvfGtiffsllas~~a~~~~fhP~ALAMasGvGSgSMMaAa~~aL~~~ 199 (241)
T PF11299_consen 127 LAIISEKYGLDSPEGRGVLGVYIIGTVFGTIFFSLLASLLASLGIFHPYALAMASGVGSGSMMAAASGALAAA 199 (241)
T ss_pred eeeeehhcCCCCccccceEEEeeehhhHHHHHHHHHHHHHHhccCCCHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 568999998543 334443333321 111211 1111113334557889998888876645443
No 327
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.52 E-value=2.9e+02 Score=20.62 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC-CCcchhHHHHHHHHHHHH
Q 013253 287 FATFMLASMLGSSLASRLMARS-PPRVESYMQIVFVVSSVS 326 (447)
Q Consensus 287 ~~~~~i~~~~~~~~~g~l~dr~-g~~~~~~l~~~~~~~~~~ 326 (447)
.+.-.+++++.....||+.||+ |.++ +-++.+.+.+.+
T Consensus 48 lssefIsGilVGa~iG~llD~~agTsP--wglIv~lllGf~ 86 (116)
T COG5336 48 LSSEFISGILVGAGIGWLLDKFAGTSP--WGLIVFLLLGFG 86 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHH
Confidence 3344466666677889999996 4444 244444444433
No 328
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=24.32 E-value=3.8e+02 Score=23.19 Aligned_cols=50 Identities=14% Similarity=0.091 Sum_probs=33.1
Q ss_pred hHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHH
Q 013253 63 LYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILS 115 (447)
Q Consensus 63 i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~ 115 (447)
..+..+++..++|......+.... ...-.+.||.+.|+....+.....+|
T Consensus 122 ~a~~~~~s~~~ig~~~g~if~i~i---l~ss~i~r~~~~~~p~~LG~~Mi~~G 171 (224)
T PF09930_consen 122 LAPSIGLSGWEIGLVLGLIFFILI---LLSSFIFRRLKKPYPIILGNFMIFLG 171 (224)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 345678888888876666555333 34667778888666666666655554
No 329
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=23.84 E-value=7.3e+02 Score=24.71 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=14.7
Q ss_pred HHHhhcCCCcchhHHHHHHHHHHHHHHH
Q 013253 302 SRLMARSPPRVESYMQIVFVVSSVSLLL 329 (447)
Q Consensus 302 g~l~dr~g~~~~~~l~~~~~~~~~~~~~ 329 (447)
...++|+|||+.+ ++-.-.+.++.+..
T Consensus 61 s~y~~~~GRRKSW-iiP~Q~l~g~~m~~ 87 (544)
T PF13000_consen 61 SVYSKRIGRRKSW-IIPIQYLSGILMLY 87 (544)
T ss_pred hhcccccCCcchh-hhHHHHHHHHHHHH
Confidence 3445589999964 33334444444333
No 330
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=23.81 E-value=3.9e+02 Score=25.72 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=17.4
Q ss_pred HHhhhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 013253 149 LVAEHNKRGFEQQWLSITFSKAIFLGNGLVAI 180 (447)
Q Consensus 149 ~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~ 180 (447)
.+.|.+|+|+...............|..+-|.
T Consensus 121 ~iP~M~k~GY~~~~A~av~aasgtlG~liPPs 152 (416)
T PF06808_consen 121 TIPEMKKAGYPPEFAAAVIAASGTLGQLIPPS 152 (416)
T ss_pred HHHHHHHcCCCHHHhHHHHhhccccchhcchH
Confidence 45666778877775555444444444433333
No 331
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=23.49 E-value=2.4e+02 Score=23.73 Aligned_cols=14 Identities=21% Similarity=0.430 Sum_probs=9.4
Q ss_pred ccchhhhccCchhH
Q 013253 91 IVGSLADKQGRKRA 104 (447)
Q Consensus 91 ~~G~l~Dr~Grr~~ 104 (447)
..+...|||||+-+
T Consensus 154 ~i~~~leryg~~l~ 167 (191)
T PF03596_consen 154 IIAEFLERYGRWLV 167 (191)
T ss_pred HHHHHHHHhcccHH
Confidence 45677788887643
No 332
>COG2836 Uncharacterized conserved protein [Function unknown]
Probab=20.78 E-value=5.6e+02 Score=22.19 Aligned_cols=25 Identities=8% Similarity=0.151 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcC
Q 013253 284 GFIFATFMLASMLGSSLASRLMARS 308 (447)
Q Consensus 284 ~~~~~~~~i~~~~~~~~~g~l~dr~ 308 (447)
+.....++++..+.-+..|..++++
T Consensus 167 al~mlaFGlGTlP~ll~~G~~s~~~ 191 (232)
T COG2836 167 ALVMLAFGLGTLPNLLAMGIFSSKL 191 (232)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHH
Confidence 5666777788777777777777765
Done!