Query 013253
Match_columns 447
No_of_seqs 545 out of 1595
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 07:06:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013253.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013253hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 100.0 1.5E-31 5E-36 257.2 32.0 329 54-409 43-409 (438)
2 1pw4_A Glycerol-3-phosphate tr 100.0 8.8E-31 3E-35 252.7 29.9 335 37-395 24-390 (451)
3 4gc0_A D-xylose-proton symport 100.0 2.5E-27 8.6E-32 231.2 25.0 337 39-395 10-414 (491)
4 4aps_A DI-OR tripeptide H+ sym 100.0 8.6E-27 2.9E-31 227.4 27.9 314 67-395 49-430 (491)
5 2gfp_A EMRD, multidrug resista 99.9 3.5E-28 1.2E-32 228.8 11.2 317 47-395 10-334 (375)
6 2cfq_A Lactose permease; trans 99.9 1.4E-24 4.8E-29 207.0 13.3 348 47-425 17-391 (417)
7 2xut_A Proton/peptide symporte 99.9 2.5E-22 8.6E-27 197.4 22.7 169 40-216 15-196 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.2 1.1E-09 3.9E-14 104.8 17.7 152 57-216 272-431 (451)
9 4aps_A DI-OR tripeptide H+ sym 99.1 9E-10 3.1E-14 106.8 14.9 153 249-421 15-184 (491)
10 3o7q_A L-fucose-proton symport 99.1 7E-09 2.4E-13 98.9 19.0 144 57-210 278-424 (438)
11 2cfq_A Lactose permease; trans 98.9 2.3E-09 8E-14 101.6 9.8 144 71-221 258-402 (417)
12 2xut_A Proton/peptide symporte 98.9 1.3E-08 4.4E-13 99.6 14.6 127 248-391 13-149 (524)
13 2gfp_A EMRD, multidrug resista 98.8 2.4E-08 8.3E-13 93.0 12.9 110 268-395 20-132 (375)
14 4gc0_A D-xylose-proton symport 98.7 1.4E-07 4.8E-12 91.3 13.3 169 57-228 297-472 (491)
15 2g9p_A Antimicrobial peptide l 45.5 4.8 0.00017 19.2 0.1 13 92-104 3-15 (26)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.5e-31 Score=257.22 Aligned_cols=329 Identities=13% Similarity=0.135 Sum_probs=227.8
Q ss_pred hhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HH---hcCchhHHHHH
Q 013253 54 WLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-IT---KHSPQYKILMI 129 (447)
Q Consensus 54 ~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~---~~~~~~~~l~~ 129 (447)
....|.+|.+.+++|.|+.++|++.+...+...++++++|+++||+|||+++..+.++.+++. +. +++++++.+++
T Consensus 43 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (438)
T 3o7q_A 43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLV 122 (438)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 344888999999999999999999999998888999999999999999999999999999875 66 78999999999
Q ss_pred HHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccC-------------
Q 013253 130 GRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLG------------- 196 (447)
Q Consensus 130 ~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~------------- 196 (447)
.|+++|++.+...+...+ +++|..+++++..... ....+..+|..+++.+++.+.+.....
T Consensus 123 ~~~l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~-----~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 196 (438)
T 3o7q_A 123 GLFIIAAGLGCLETAANP-FVTVLGPESSGHFRLN-----LAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQ 196 (438)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHSSCSTTHHHHHH-----HHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHH
T ss_pred HHHHHHhhHHHhhhhHHH-HHHHHcCchhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcch
Confidence 999999999999998866 8888843333332111 223344566666666666665222222
Q ss_pred -----------ccchhhhHHHHHHHHHHHHH-HhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhh
Q 013253 197 -----------PVAPFDAAACFLAIGMVIIL-SSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMY 264 (447)
Q Consensus 197 -----------~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (447)
||..|...+.+..+..+... .+.||++++++++ +..++.++..++++|+|+++...+...+......
T Consensus 197 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (438)
T 3o7q_A 197 LSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD-AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQT 275 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC-SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc-ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 77778766655554443333 2345544332121 1122334566778899998887777666555544
Q ss_pred hhhhhccccc-ccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCC
Q 013253 265 TFVFLWTPAL-SPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPS 340 (447)
Q Consensus 265 ~~~~~~~~~~-~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 340 (447)
. ...|.|.| .++..+.+. +.......++.++++++.+++.||+|||+. +..+..+..+...........
T Consensus 276 ~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~---- 348 (438)
T 3o7q_A 276 A-CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV--LAAYALIAMALCLISAFAGGH---- 348 (438)
T ss_dssp H-HHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH--HHHHHHHHHHHHHHHHHCCHH----
T ss_pred H-HHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH--HHHHHHHHHHHHHHHHHcCCc----
Confidence 4 57888998 777767765 667777788999999999999999998873 444444444433332222111
Q ss_pred CCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh-----hhHHHHHHHHhhcc
Q 013253 341 NVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP-----LNIFVCVVLYNVDA 409 (447)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-----~~~~~~~~l~~~~~ 409 (447)
.......+.+++.+..+|..+++..|.+|++ ++++.++.... .++.+.+.+.+..+
T Consensus 349 ------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 349 ------------VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp ------------HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHHHTTHHHHHHHHHHHHHHHHHT
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345567788888888999999999999977 66665544321 23344455555544
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=8.8e-31 Score=252.73 Aligned_cols=335 Identities=10% Similarity=0.054 Sum_probs=232.3
Q ss_pred hhhHHHHHHHHHHHhhhhhc----chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHH
Q 013253 37 SFKNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTY 112 (447)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~----~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~ 112 (447)
+.++..+....+..+...++ .+.+|.+.+++ .|+.+.|++.+...+...++++++|+++||+|||+++..+.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence 34455455444444444433 78888899999 99999999999998888899999999999999999999999999
Q ss_pred HHHH-HHhc----CchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 013253 113 ILSC-ITKH----SPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGN 187 (447)
Q Consensus 113 ~i~~-l~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~ 187 (447)
+++. ++++ ++|++.+++.|+++|++.+...+...+ ++.|..+++++.... .....+..+|..+++.+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~-~i~~~~~~~~r~~~~-----~~~~~~~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 103 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGR-TMVHWWSQKERGGIV-----SVWNCAHNVGGGIPPLLFL 176 (451)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHH-HHHTTCTTTHHHHHH-----HHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHH-HHHHHCCchhhhHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 9986 6678 899999999999999999999998866 888874333333211 1233345566677777777
Q ss_pred hhhcccccCccchhhhHHHHHHHHHHHHHHhccccCCCCC-----CchhH-----------HHHHHH-HHHHHhcchhHH
Q 013253 188 LLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTENYGDPS-----ESKDL-----------LTQFRG-AAVAIASDEKIA 250 (447)
Q Consensus 188 ~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----------~~~~~~-~~~~~~~~~~~~ 250 (447)
.+.+..+ +||..|++.+++.++..++.....||++.+.+ +.++. .++.++ ..++.+++|+++
T Consensus 177 ~l~~~~g-~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (451)
T 1pw4_A 177 LGMAWFN-DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLW 255 (451)
T ss_dssp HHHHHTC-CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHH
T ss_pred HHHHHhc-cHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHH
Confidence 6664443 16777888777766655555445555432211 00000 000001 135677888888
Q ss_pred HHHHHHHhhhhhhhhhhhhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcC--CCcchhHHHHHHHHHH-
Q 013253 251 LLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARS--PPRVESYMQIVFVVSS- 324 (447)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~--g~~~~~~l~~~~~~~~- 324 (447)
...+...+.....+. ...+.|.|.++..+.+. +...+...++.+++.++.+++.||+ ++|+. +..+..+..
T Consensus 256 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~--~~~~~~~~~~ 332 (451)
T 1pw4_A 256 YIAIANVFVYLLRYG-ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA--TGVFFMTLVT 332 (451)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh--HHHHHHHHHH
Confidence 777766666655554 57889999988777776 6677788889999999999999999 77762 333333333
Q ss_pred HHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 325 VSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+.......... ...+......++.|++.+...+..+++..|..|++.|+++.|+.+..
T Consensus 333 ~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 390 (451)
T 1pw4_A 333 IATIVYWMNPA-------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF 390 (451)
T ss_dssp HHHHHTTSCCT-------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHH
Confidence 22222111100 01235566677788888888888899999999999999999887664
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=2.5e-27 Score=231.16 Aligned_cols=337 Identities=14% Similarity=0.075 Sum_probs=193.0
Q ss_pred hHHHHHHHHHHHhhhhhc----chhHhHhHhhcCCC--------CcchhHHHHHHHHhhhhhccccchhhhccCchhHHH
Q 013253 39 KNNYLLVYSLMMAGDWLQ----GPYVYYLYSTYGFG--------KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACV 106 (447)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~----~~~l~~i~~~~g~s--------~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~ 106 (447)
.+.+.++..+..+..++| ++.+|.+.++++.+ +.+.|++.+..++...++++++|+++||+|||+++.
T Consensus 10 ~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~ 89 (491)
T 4gc0_A 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK 89 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 333333334444444544 56677777666432 234566766666666777889999999999999999
Q ss_pred HHHHHHHHHH-HHh------------------cCchhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHH
Q 013253 107 TYCLTYILSC-ITK------------------HSPQYKILMIGRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITF 167 (447)
Q Consensus 107 ~~~~~~~i~~-l~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~ 167 (447)
++.+++.++. +++ +++|+++++++|+++|++.|...+.... +++|..++.++..... ..
T Consensus 90 ~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~-~i~E~~p~~~rg~~~~-~~ 167 (491)
T 4gc0_A 90 IAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPM-YIAELAPAHIRGKLVS-FN 167 (491)
T ss_dssp HHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTSCGGGHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCHHhhhhhHH-hh
Confidence 9999998875 555 4789999999999999999999998855 9999844433332211 12
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcc------cccCccchhhhHHHHHHHHHHHHHHhccccC------CCCCCchhHHHH
Q 013253 168 SKAIFLGNGLVAILSGLFGNLLVDS------FSLGPVAPFDAAACFLAIGMVIILSSWTENY------GDPSESKDLLTQ 235 (447)
Q Consensus 168 ~~~~~~g~~ig~~~~~~l~~~l~~~------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 235 (447)
... ..+|..+++.++...... ..+.||..+....+..++..+.. +..||++ ++++++++..++
T Consensus 168 ~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~peSp~~L~~~~~~~~a~~~l~~ 242 (491)
T 4gc0_A 168 QFA----IIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLL-YTVPESPRWLMSRGKQEQAEGILRK 242 (491)
T ss_dssp HHH----HHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHG-GGSCCCHHHHHHTTCHHHHHHHHHH
T ss_pred hhh----hhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhh-hcCCCChHHHHHcCchhHHHHhHHH
Confidence 222 233333333333322221 12456666666555554443333 3566643 222222221111
Q ss_pred HHH----------------------HHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCCc--hHHHHHHH
Q 013253 236 FRG----------------------AAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH--GFIFATFM 291 (447)
Q Consensus 236 ~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 291 (447)
... ......+.++.........+.+...+.....|.|.+.++....+. .......+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (491)
T 4gc0_A 243 IMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVG 322 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred hcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHH
Confidence 100 001112223333333333333444444455666665544322222 33345566
Q ss_pred HHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccc-hh
Q 013253 292 LASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIF-WP 370 (447)
Q Consensus 292 i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~ 370 (447)
+...++.++.+++.||+|||+. +..+.....++............+ .+..+....++..+++.. .|
T Consensus 323 ~~~~~~~~~~~~l~dr~Grr~~--~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 389 (491)
T 4gc0_A 323 VINLTFTVLAIMTVDKFGRKPL--QIIGALGMAIGMFSLGTAFYTQAP-----------GIVALLSMLFYVAAFAMSWGP 389 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCSHHH--HHHHHHHHHHHHHHHHHHHHTTCC-----------HHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHHHHHHHhhcCcch--hccchHHHHHHHHHHHHHHhcccc-----------hHHHHHHHHHHHHHHHhHHHH
Confidence 7889999999999999999983 444444444444333322222110 123333334433443333 37
Q ss_pred HHHHHHhhcCChhhhccccchhhhh
Q 013253 371 SIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 371 ~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
..+.+.+|.+|++.|+++.|+.+..
T Consensus 390 ~~~~~~~E~fPt~~R~~~~g~~~~~ 414 (491)
T 4gc0_A 390 VCWVLLSEIFPNAIRGKALAIAVAA 414 (491)
T ss_dssp HHHHHHHHSSCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHhHHHHHHHHHHHH
Confidence 8889999999999999999987654
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=8.6e-27 Score=227.39 Aligned_cols=314 Identities=15% Similarity=0.089 Sum_probs=196.7
Q ss_pred cCCCCcchhHHHHHHHHhhhhhccccchhhhc-cCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHhhhhhhhhh
Q 013253 67 YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSA 144 (447)
Q Consensus 67 ~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr-~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~ 144 (447)
+|.|+.+.|++.+...+...++++++|+++|| +|||+++..+.++.+++. ++++++|++.+++.|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999888888999999999999 899999999999999986 6789999999999999999999999888
Q ss_pred hhHHHHhhhcccch--hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHHHHhccc-
Q 013253 145 FESWLVAEHNKRGF--EQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTE- 221 (447)
Q Consensus 145 ~~~~~i~~~~~r~~--~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~- 221 (447)
..+ +++|..+++. +.. ..+ ....+..+|..++|.+++.+.+.. +|+..|++.++..++..+......++
T Consensus 129 ~~~-~~~~~~~~~~~~r~~----~~~-~~~~~~~~g~~~~~~~~~~l~~~~--g~~~~f~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4aps_A 129 VST-LVGTLYDEHDRRRDA----GFS-IFVFGINLGAFIAPLIVGAAQEAA--GYHVAFSLAAIGMFIGLLVYYFGGKKT 200 (491)
T ss_dssp HHH-HHHHHSSSCTTHHHH----HHH-HHHHHHHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHcCccccccee----eeh-HHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 866 8888732222 211 111 223345567777777777777544 56777877666555544433322222
Q ss_pred --cCC-CCCC--chhHHHHHHHH---------------------------------------------HH-------HHh
Q 013253 222 --NYG-DPSE--SKDLLTQFRGA---------------------------------------------AV-------AIA 244 (447)
Q Consensus 222 --~~~-~~~~--~~~~~~~~~~~---------------------------------------------~~-------~~~ 244 (447)
+++ ++++ .++..++..+. .+ +..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (491)
T 4aps_A 201 LDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHL 280 (491)
T ss_dssp CCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred ccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 111 1111 11111110000 00 000
Q ss_pred cchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCCcchh---HHHH
Q 013253 245 SDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIP---HGFIFATFMLASMLGSSLASRLMARSPPRVES---YMQI 318 (447)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~---~l~~ 318 (447)
+....+.......+.... +.....+.|.+.++..+.+ .+.......+..+++..+.+++.||++||+.. .+..
T Consensus 281 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~ 359 (491)
T 4aps_A 281 RVVSYIPLFIAAVLFWAI-EEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAV 359 (491)
T ss_dssp -CTTHHHHHHHHHHHHHH-HGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHH
Confidence 111122222222222222 2334555666665544444 47777788888899999999999999988531 1223
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 319 VFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+..+..++............+ ......+......++.+++.+...+..+++..|..|++.|+++.|+.+..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 430 (491)
T 4aps_A 360 GLMFAGLSFLLMAIPGALYGT------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLS 430 (491)
T ss_dssp HHHHHHHHHTTTHHHHHHCCC------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCC------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 333333333332222211000 00111245667788888998888899999999999999999999987765
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.95 E-value=3.5e-28 Score=228.80 Aligned_cols=317 Identities=13% Similarity=0.063 Sum_probs=222.1
Q ss_pred HHHHhhhhhcchhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhH
Q 013253 47 SLMMAGDWLQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYK 125 (447)
Q Consensus 47 ~~~~~~~~~~~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~ 125 (447)
++.........|.+|.+.+++|.|+.+.+++.+...+...+++++.|+++||+|||+++..+..+.+++. +..+++|++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 89 (375)
T 2gfp_A 10 AVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLT 89 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHH
Confidence 3334455555888899999999999999999999988888999999999999999999999999999876 668889999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHhhh---cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhh
Q 013253 126 ILMIGRILGGIATSLLFSAFESWLVAEH---NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFD 202 (447)
Q Consensus 126 ~l~~~r~l~G~~~~~~~~~~~~~~i~~~---~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~ 202 (447)
.+++.|+++|++.+...+...+ ++.|. ++|++..+.. ..+..+|..+++.+++.+.+. ++||..|.
T Consensus 90 ~l~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~ 158 (375)
T 2gfp_A 90 VLIAASAMQGMGTGVGGVMART-LPRDLYERTQLRHANSLL--------NMGILVSPLLAPLIGGLLDTM--WNWRACYL 158 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTSSCCSHHHHH--------HHHHHHHHHHHHHHHHHSSCH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHH-HHHHHCCHHHHHHHHHHH--------HHHHHHHHHhhHHHHHHHHHh--ccHHHHHH
Confidence 9999999999999999888866 77776 4455544432 234446667777777776654 35677787
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhcccccccccCCCC
Q 013253 203 AAACFLAIGMVIILSSWTENYGDPSESKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIP 282 (447)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (447)
+.+++.++..+......||++++++++++. .+..++.+|+|+++...+...+....... ...+.|.+.++..+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~ 233 (375)
T 2gfp_A 159 FLLVLCAGVTFSMARWMPETRPVDAPRTRL----LTSYKTLFGNSGFNCYLLMLIGGLAGIAA-FEACSGVLMGAVLGLS 233 (375)
T ss_dssp HHHHHHHHHHCCCCCSSCCCSTTTCCCCCT----TTCSTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCSCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcccCCCCcccccH----HHHHHHHhcCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCC
Confidence 777666655443434556654433322211 23345667788888776666665555444 5788999987755555
Q ss_pred c---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHH-HHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHH
Q 013253 283 H---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVV-SSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGF 358 (447)
Q Consensus 283 ~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (447)
. +.......++.+++..+.+++.||.++ + ...+... ............... ...+...+..
T Consensus 234 ~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-~---~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 298 (375)
T 2gfp_A 234 SMTVSILFILPIPAAFFGAWFAGRPNKRFST-L---MWQSVICCLLAGLLMWIPDWFGV-----------MNVWTLLVPA 298 (375)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-H---HHHHHHHHHHTSSSSSHHHHHHH-----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHhhhcc-----------ccHHHHHHHH
Confidence 4 666677778888899999999988765 2 2222222 111111111111000 0013455677
Q ss_pred HHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 359 CTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 359 ~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
++.+++.+...+...++..|..| ++|+++.|+.+..
T Consensus 299 ~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~ 334 (375)
T 2gfp_A 299 ALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGL 334 (375)
T ss_dssp HHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHH
Confidence 78888888889999999999998 7899999987764
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.91 E-value=1.4e-24 Score=206.96 Aligned_cols=348 Identities=13% Similarity=0.050 Sum_probs=189.5
Q ss_pred HHHHhhhhhcchhHhHhH-hhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHH---HH-HhcC
Q 013253 47 SLMMAGDWLQGPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILS---CI-TKHS 121 (447)
Q Consensus 47 ~~~~~~~~~~~~~l~~i~-~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~---~l-~~~~ 121 (447)
++.........|++|... +++|.|+.+.|.+.+...+...++++++|+++||+||||++..+..+.++. .. ..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~ 96 (417)
T 2cfq_A 17 FFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG 96 (417)
T ss_dssp HHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455567777654 569999999999999988888899999999999999999999988776542 11 1222
Q ss_pred chhH-HHHHHHHHHHhhhhhhhhhhhH---HHHhhh-cccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccC
Q 013253 122 PQYK-ILMIGRILGGIATSLLFSAFES---WLVAEH-NKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLG 196 (447)
Q Consensus 122 ~~~~-~l~~~r~l~G~~~~~~~~~~~~---~~i~~~-~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~ 196 (447)
+... .+...+.+.|++.+...+...+ .+..|. ++++...+.. ..+..+|..++|.+++++.+ ++
T Consensus 97 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------~~~~~~g~~~~~~l~~~l~~---~~ 165 (417)
T 2cfq_A 97 PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRA--------RMFGCVGWALGASIVGIMFT---IN 165 (417)
T ss_dssp HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHH--------SSSTTTHHHHHHHHHHHHHH---HC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHH--------HHHHHHHHHHHHHHHHHHHH---hc
Confidence 2211 2334556666555444333222 123222 1222211111 11234566666677766654 34
Q ss_pred ccchhhhHHHHHHHHHHHHHHhccccCCCC--CCc--hhHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhhhhhhhccc
Q 013253 197 PVAPFDAAACFLAIGMVIILSSWTENYGDP--SES--KDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTP 272 (447)
Q Consensus 197 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (447)
|+..|++.++..++..+......||++++. +++ ++..+...+..++.+|+|+++...+........ +.....+.|
T Consensus 166 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 244 (417)
T 2cfq_A 166 NQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT-YDVFDQQFA 244 (417)
T ss_dssp SHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHH-HHHHHHHHH
Confidence 667777655544333222221223321110 110 000011112345677888877665443332222 222344566
Q ss_pred ccccccCCCC---c---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCc
Q 013253 273 ALSPNDEEIP---H---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKSGG 346 (447)
Q Consensus 273 ~~~~~~~~~~---~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (447)
.|.++.++.. . +.......++.+++.++.++++||+|||+. +..+..+..+......... .
T Consensus 245 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~--l~~~~~~~~~~~~~~~~~~-~---------- 311 (417)
T 2cfq_A 245 NFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA--LLLAGTIMSVRIIGSSFAT-S---------- 311 (417)
T ss_dssp HHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH--HHHHHHHHHHHHHHHTTCC-S----------
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH--HHHHHHHHHHHHHHHHHhc-c----------
Confidence 6654433321 1 455566667888899999999999998873 4444433333322221110 0
Q ss_pred cccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchh-hhh------hhHHHHHHHHhhcccchHHHHHHH
Q 013253 347 ISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFF-RIP------LNIFVCVVLYNVDAFPITVMFGMC 419 (447)
Q Consensus 347 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~------~~~~~~~~l~~~~~~~~~~~~~~~ 419 (447)
.+...+...+.+++.+...+..+.+..|.+|++.|+++.+.. +.. .++.+++.+.+.. ++...+..+
T Consensus 312 ----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~--g~~~~f~~~ 385 (417)
T 2cfq_A 312 ----ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI--GFQGAYLVL 385 (417)
T ss_dssp ----HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS--HHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc--CcHHHHHHH
Confidence 123444455556666656677788999999999999987773 432 2234444444432 344444444
Q ss_pred HHHHHH
Q 013253 420 SIFLLV 425 (447)
Q Consensus 420 ~~~~~~ 425 (447)
++..++
T Consensus 386 ~~~~l~ 391 (417)
T 2cfq_A 386 GLVALG 391 (417)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.90 E-value=2.5e-22 Score=197.39 Aligned_cols=169 Identities=11% Similarity=0.144 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHhhhhhcchhHh-HhHhhcC------CCCcchhHHHHHHHHhhhhhccccchhhhcc-CchhHHHHHHHH
Q 013253 40 NNYLLVYSLMMAGDWLQGPYVY-YLYSTYG------FGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCLT 111 (447)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~-~i~~~~g------~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~-Grr~~l~~~~~~ 111 (447)
+......++..+......+.++ .+.+++| .|+.+.|++.+...+...++++++|+++||+ |||+++..+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~ 94 (524)
T 2xut_A 15 PYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLI 94 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3344444444444433344444 4557889 9999999999998888888899999999999 999999999999
Q ss_pred HHHHH-HHhcCc-hhHHHHHHHHHHHhhhhhhhhhhhHHHHhhhcc---cchhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 013253 112 YILSC-ITKHSP-QYKILMIGRILGGIATSLLFSAFESWLVAEHNK---RGFEQQWLSITFSKAIFLGNGLVAILSGLFG 186 (447)
Q Consensus 112 ~~i~~-l~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~---r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~ 186 (447)
.+++. +.++++ +++.+++.|++.|++.+...+...+ ++.|..+ |++..+.. + ....+..+|..++|.++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~----~-~~~~~~~~g~~~g~~~~ 168 (524)
T 2xut_A 95 YCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSS-FMGDQFDQSNKSLAQKAF----D-MFYFTINFGSFFASLSM 168 (524)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHH-HHHHTCSTTTTTHHHHHH----H-HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHH-HHHHHcCccchHHHHHHH----H-HHHHHHHHHHHHHHHHH
Confidence 98876 668888 9999999999999999999888866 8888733 33323321 1 13334557777777888
Q ss_pred hhhhcccccCccchhhhHHHHHHHHHHHHH
Q 013253 187 NLLVDSFSLGPVAPFDAAACFLAIGMVIIL 216 (447)
Q Consensus 187 ~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~ 216 (447)
+.+.+. ++|+..|.+.+++.++..+...
T Consensus 169 ~~l~~~--~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 169 PLLLKN--FGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp THHHHT--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcc--ccHHHHHHHHHHHHHHHHHHHH
Confidence 777754 4567778877766655544433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.15 E-value=1.1e-09 Score=104.78 Aligned_cols=152 Identities=12% Similarity=0.012 Sum_probs=104.3
Q ss_pred chhHhHhHhh-cCCCCcchhHHHHHHHHhhhhhccccchhhhcc--CchhHHHHHHHHHH-HHH-HHhcC--chhHHHHH
Q 013253 57 GPYVYYLYST-YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQ--GRKRACVTYCLTYI-LSC-ITKHS--PQYKILMI 129 (447)
Q Consensus 57 ~~~l~~i~~~-~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~--Grr~~l~~~~~~~~-i~~-l~~~~--~~~~~l~~ 129 (447)
..++|.+.++ +|.++.+.+.+.+...+...++.++.|++.||+ |||+.+..+..+.. ++. +..+. ++.+.+.+
T Consensus 272 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (451)
T 1pw4_A 272 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI 351 (451)
T ss_dssp HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 5566666655 899999999888888777888888999999999 99999988877776 555 34554 36777888
Q ss_pred HHHHHHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHH-HHHHhhhhhhhhhcccccCccchhhhHHHHH
Q 013253 130 GRILGGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGL-VAILSGLFGNLLVDSFSLGPVAPFDAAACFL 208 (447)
Q Consensus 130 ~r~l~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~i-g~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~ 208 (447)
..++.|++.+...+.... ++.|..++..+.. ..+ .......+ |..+++.+.+.+.+..+ ++..|+..+++.
T Consensus 352 ~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~g~----~~~-~~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~ 423 (451)
T 1pw4_A 352 CMIVIGFLIYGPVMLIGL-HALELAPKKAAGT----AAG-FTGLFGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIGGS 423 (451)
T ss_dssp HHHHHHHHHTHHHHHHHH-HHHHTSCTTHHHH----HHH-HHHHHHHHHHHHHHHHHHHHHHHSSC--SHHHHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHH-HHHHHhchhhhhh----HHH-HHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHH
Confidence 888999988888777645 7777643333322 122 12222334 66777777777776544 566677766666
Q ss_pred HHHHHHHH
Q 013253 209 AIGMVIIL 216 (447)
Q Consensus 209 ~~~~~~~~ 216 (447)
++..+...
T Consensus 424 ~~~~~~~~ 431 (451)
T 1pw4_A 424 ILAVILLI 431 (451)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.11 E-value=9e-10 Score=106.83 Aligned_cols=153 Identities=12% Similarity=0.048 Sum_probs=98.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhhccccccccc-----CCCCc---hHHHHHHHHHHHHHHHHHHHHhhc-CCCcchhHHHHH
Q 013253 249 IALLGAIQSLFEGSMYTFVFLWTPALSPND-----EEIPH---GFIFATFMLASMLGSSLASRLMAR-SPPRVESYMQIV 319 (447)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~~~l~~~ 319 (447)
.+.......+.....+. ...+.+.|.++. ++.+. +...+...++..+++++.|+++|| +|||+. +..+
T Consensus 15 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~--~~~~ 91 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYG-MRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPA--VFWG 91 (491)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH--HHHH
Confidence 34444333333444333 456677777665 77766 677788889999999999999999 899883 5555
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhh--hccccchhhhh--
Q 013253 320 FVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEA--RSTIMNFFRIP-- 395 (447)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~-- 395 (447)
..+..+.........+ .+...+..++.|++.+...|...+++.|.+|+++ |+++.+..+..
T Consensus 92 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 156 (491)
T 4aps_A 92 GVLIMLGHIVLALPFG---------------ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGIN 156 (491)
T ss_dssp HHHHHHHHHHHHSCCS---------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh---------------HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHH
Confidence 5554444443322111 1366778888999999999999999999999988 66677665543
Q ss_pred ----hhHHHHHHHHhhcccchHHHHHHHHH
Q 013253 396 ----LNIFVCVVLYNVDAFPITVMFGMCSI 421 (447)
Q Consensus 396 ----~~~~~~~~l~~~~~~~~~~~~~~~~~ 421 (447)
.++.+++.+.+..+ +...+...++
T Consensus 157 ~g~~~~~~~~~~l~~~~g--~~~~f~~~~~ 184 (491)
T 4aps_A 157 LGAFIAPLIVGAAQEAAG--YHVAFSLAAI 184 (491)
T ss_dssp HHHHHHHHHHHHHHHHSC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhh--HHHHHHHHHH
Confidence 23344444444433 4444444333
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.07 E-value=7e-09 Score=98.88 Aligned_cols=144 Identities=13% Similarity=0.016 Sum_probs=98.2
Q ss_pred chhHhHh-Hh-hcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHH
Q 013253 57 GPYVYYL-YS-TYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRIL 133 (447)
Q Consensus 57 ~~~l~~i-~~-~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l 133 (447)
...+|.. .+ .+|.++.+.+...+...+...++.++.|+++||+|||+.+..+.++..++. +..+.++.+.+... ++
T Consensus 278 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 356 (438)
T 3o7q_A 278 WSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TL 356 (438)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HH
T ss_pred HHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HH
Confidence 4455555 54 459999999988888777788888899999999999999999998888776 55777777655544 88
Q ss_pred HHhhhhhhhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHH
Q 013253 134 GGIATSLLFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAI 210 (447)
Q Consensus 134 ~G~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~ 210 (447)
.|++.+...+...+ +..|..++.+.. ..+ ... ...+|..++|.+.+.+.+..+ +++..|.+.++..++
T Consensus 357 ~g~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~-~~~-~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~ 424 (438)
T 3o7q_A 357 CSAFMSIQYPTIFS-LGIKNLGQDTKY-----GSS-FIV-MTIIGGGIVTPVMGFVSDAAG-NIPTAELIPALCFAV 424 (438)
T ss_dssp HHHHHTTHHHHHHH-HHHSSCGGGHHH-----HHH-HHH-HTTHHHHHHHHHHHHHHHHHT-SSGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHhhccccccc-----hhh-HHH-HHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHH
Confidence 88988888887755 555552222111 111 112 233777788888888776655 145566655444333
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.94 E-value=2.3e-09 Score=101.59 Aligned_cols=144 Identities=10% Similarity=0.030 Sum_probs=93.4
Q ss_pred CcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHhhhhhhhhhhhHHH
Q 013253 71 KGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITKHSPQYKILMIGRILGGIATSLLFSAFESWL 149 (447)
Q Consensus 71 ~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 149 (447)
..+.+...+...+...++.++.|+++||+|||+.+..+..+.+++. +.++.++.+.+++..++.+++.+...+.... +
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ 336 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK-Y 336 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH-H
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3445666565555556667789999999999999998888887765 5577788888888888888877666665544 7
Q ss_pred HhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHHHHHHHHHHhccc
Q 013253 150 VAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLAIGMVIILSSWTE 221 (447)
Q Consensus 150 i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 221 (447)
++|..+.+.+.. ..+.....+..+|..++|.+++.+.+.. ++...|...+++.++..+......||
T Consensus 337 ~~~~~p~~~~g~----~~g~~~~~~~~lg~~~gp~l~G~l~~~~--g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 337 ITSQFEVRFSAT----IYLVCFCFFKQLAMIFMSVLAGNMYESI--GFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHSCHHHHHH----HHHHHHTTTHHHHHHHHTHHHHTHHHHS--HHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHCCHHHHHH----HHHHHHHHHHhHHHHHhhhhHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 777643333222 1222223345577777788887777543 34566776666666555544433443
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.92 E-value=1.3e-08 Score=99.56 Aligned_cols=127 Identities=10% Similarity=0.016 Sum_probs=86.9
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhcccccccccCC------CCc---hHHHHHHHHHHHHHHHHHHHHhhcC-CCcchhHHH
Q 013253 248 KIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE------IPH---GFIFATFMLASMLGSSLASRLMARS-PPRVESYMQ 317 (447)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~~~~~~~i~~~~~~~~~g~l~dr~-g~~~~~~l~ 317 (447)
.++...+...+.....+. ...+.+.|+++..+ .+. +.+.+...++..++.++.|+++||+ |||+. +.
T Consensus 13 ~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~--~~ 89 (524)
T 2xut_A 13 QIPYIIASEACERFSFYG-MRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT--IL 89 (524)
T ss_dssp CCTHHHHHHHHHHHHHHH-HHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH--HH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH--HH
Confidence 344444444444444443 45667777665555 544 7788888899999999999999999 99883 44
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccch
Q 013253 318 IVFVVSSVSLLLPIVTSFLVAPSNVKSGGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNF 391 (447)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~ 391 (447)
.+..+..+........... .+..++..++.|++.+...|...+++.|.+|+++|++..+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 149 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIFEHS--------------VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA 149 (524)
T ss_dssp HHHHHHHHHHHHHHHTSSC--------------HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhccc--------------HHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHH
Confidence 4444444444433322201 13567778888999999999999999999999999766554
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.84 E-value=2.4e-08 Score=93.05 Aligned_cols=110 Identities=8% Similarity=0.077 Sum_probs=81.6
Q ss_pred hhcccccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 013253 268 FLWTPALSPNDEEIPH---GFIFATFMLASMLGSSLASRLMARSPPRVESYMQIVFVVSSVSLLLPIVTSFLVAPSNVKS 344 (447)
Q Consensus 268 ~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (447)
....|.+. ++.+.+. +...+...++..++.++.|+++||+|||+. +..+.....+.........+.
T Consensus 20 ~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~--~~~~~~~~~~~~~~~~~~~~~-------- 88 (375)
T 2gfp_A 20 IPAIADMA-RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPV--ILVGMSIFMLATLVAVTTSSL-------- 88 (375)
T ss_dssp HHHHHHHH-TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCC--CHHHHHHHHHHHHHHHHHHHH--------
T ss_pred hhhhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHHHhccH--------
Confidence 33455544 3455554 677788889999999999999999999984 445555544444443333222
Q ss_pred CccccchhhHHHHHHHHHhhhccchhHHHHHHhhcCChhhhccccchhhhh
Q 013253 345 GGISFSGSLQLLGFCTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIP 395 (447)
Q Consensus 345 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 395 (447)
+...+..++.|++.+...+...+++.|..|+++|+++++..+..
T Consensus 89 -------~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (375)
T 2gfp_A 89 -------TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMG 132 (375)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 36677788889999988999999999999999999999887764
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.69 E-value=1.4e-07 Score=91.25 Aligned_cols=169 Identities=15% Similarity=0.049 Sum_probs=90.6
Q ss_pred chhHhHhHhhcCCCCcchhHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHH-HHh-----cCchhHHHHHH
Q 013253 57 GPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCLTYILSC-ITK-----HSPQYKILMIG 130 (447)
Q Consensus 57 ~~~l~~i~~~~g~s~~~~g~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~-l~~-----~~~~~~~l~~~ 130 (447)
..+.+.+.++.+.+..+.........+...+..++.+++.||+|||+.++.+.....++. ..+ ..++...+ +.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~ 375 (491)
T 4gc0_A 297 LYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL-LS 375 (491)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH-HH
T ss_pred HhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHH-HH
Confidence 444566777777776666555445555566667789999999999999998887776653 221 12222222 22
Q ss_pred HHHHHhhhhh-hhhhhhHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCccchhhhHHHHHH
Q 013253 131 RILGGIATSL-LFSAFESWLVAEHNKRGFEQQWLSITFSKAIFLGNGLVAILSGLFGNLLVDSFSLGPVAPFDAAACFLA 209 (447)
Q Consensus 131 r~l~G~~~~~-~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~l~~~~~~~~~~~f~~~~~~~~ 209 (447)
-.+...+.+. ..+.. ..+.+|.-+...+..-... ......++..+++.+.|.+.........+++...|++.+++.+
T Consensus 376 ~~~~~~~~~~~~~~~~-~~~~~E~fPt~~R~~~~g~-~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~ 453 (491)
T 4gc0_A 376 MLFYVAAFAMSWGPVC-WVLLSEIFPNAIRGKALAI-AVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV 453 (491)
T ss_dssp HHHHHHHHHTTTTHHH-HHHHHHSSCTTTHHHHHHH-HHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHH-HHHHHHhCCHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 2222222222 22333 3367887333322221111 1112223333444444433221111122344566777777777
Q ss_pred HHHHHHHHhccccCCCCCC
Q 013253 210 IGMVIILSSWTENYGDPSE 228 (447)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~ 228 (447)
+..++.++..||++++.-|
T Consensus 454 ~~~i~~~~~~PETkg~tLe 472 (491)
T 4gc0_A 454 LAALFMWKFVPETKGKTLE 472 (491)
T ss_dssp HHHHHHHHHCCCCTTCCHH
T ss_pred HHHHHHHheecCCCCCCHH
Confidence 7777777789999877543
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=45.53 E-value=4.8 Score=19.21 Aligned_cols=13 Identities=46% Similarity=0.621 Sum_probs=10.6
Q ss_pred cchhhhccCchhH
Q 013253 92 VGSLADKQGRKRA 104 (447)
Q Consensus 92 ~G~l~Dr~Grr~~ 104 (447)
.|.+..+||||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 5788899999864
Done!