Query 013254
Match_columns 447
No_of_seqs 227 out of 1155
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 01:59:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013254.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013254hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1605 TFIIF-interacting CTD 100.0 1.2E-48 2.6E-53 383.3 14.2 180 266-445 81-262 (262)
2 TIGR02251 HIF-SF_euk Dullard-l 100.0 1.3E-40 2.9E-45 305.1 18.0 161 274-434 1-162 (162)
3 PF03031 NIF: NLI interacting 100.0 1.3E-38 2.8E-43 287.4 16.8 158 275-436 1-159 (159)
4 TIGR02245 HAD_IIID1 HAD-superf 100.0 2.1E-36 4.5E-41 286.3 15.4 159 271-445 18-194 (195)
5 TIGR02250 FCP1_euk FCP1-like p 100.0 1.6E-31 3.4E-36 244.6 13.5 138 271-411 3-154 (156)
6 KOG2832 TFIIF-interacting CTD 100.0 5.9E-32 1.3E-36 272.1 10.9 160 268-444 183-344 (393)
7 COG5190 FCP1 TFIIF-interacting 100.0 4.6E-29 1E-33 256.2 8.4 175 268-443 206-382 (390)
8 smart00577 CPDc catalytic doma 99.9 2E-26 4.4E-31 207.6 15.4 145 273-417 1-148 (148)
9 KOG0323 TFIIF-interacting CTD 99.9 1.2E-21 2.6E-26 211.3 10.5 137 272-411 144-297 (635)
10 COG5190 FCP1 TFIIF-interacting 98.5 5.1E-08 1.1E-12 101.4 3.4 137 271-409 23-172 (390)
11 TIGR01685 MDP-1 magnesium-depe 98.5 4.4E-07 9.6E-12 85.1 7.8 138 275-412 3-158 (174)
12 TIGR01681 HAD-SF-IIIC HAD-supe 98.3 2.8E-07 6.2E-12 81.4 3.1 110 276-397 2-121 (128)
13 COG4996 Predicted phosphatase 98.2 6.6E-06 1.4E-10 74.3 7.9 138 276-419 2-154 (164)
14 cd01427 HAD_like Haloacid deha 98.1 1.3E-06 2.8E-11 73.3 2.9 107 276-398 1-127 (139)
15 TIGR01662 HAD-SF-IIIA HAD-supe 98.1 3.6E-06 7.9E-11 73.4 3.9 113 276-406 2-126 (132)
16 TIGR01684 viral_ppase viral ph 98.0 2E-05 4.3E-10 79.7 7.8 123 271-416 123-281 (301)
17 PRK14988 GMP/IMP nucleotidase; 97.9 3.7E-06 8E-11 80.8 1.8 93 313-406 92-188 (224)
18 PHA03398 viral phosphatase sup 97.9 5.3E-05 1.1E-09 76.7 9.3 123 271-416 125-283 (303)
19 TIGR00338 serB phosphoserine p 97.8 4E-06 8.7E-11 78.9 0.1 94 313-407 84-191 (219)
20 TIGR00213 GmhB_yaeD D,D-heptos 97.8 3.3E-05 7.1E-10 71.3 4.9 115 275-407 2-146 (176)
21 TIGR01656 Histidinol-ppas hist 97.7 2E-05 4.3E-10 70.8 3.2 116 276-407 2-141 (147)
22 TIGR01686 FkbH FkbH-like domai 97.7 4.2E-05 9E-10 77.5 5.8 108 274-397 3-116 (320)
23 PRK08942 D,D-heptose 1,7-bisph 97.7 5.6E-05 1.2E-09 69.9 5.5 116 274-406 3-142 (181)
24 TIGR01261 hisB_Nterm histidino 97.7 7.7E-05 1.7E-09 68.9 6.1 123 275-412 2-148 (161)
25 PF12689 Acid_PPase: Acid Phos 97.7 0.00012 2.6E-09 68.6 7.4 114 274-397 3-137 (169)
26 PHA02530 pseT polynucleotide k 97.6 3.6E-05 7.7E-10 76.3 3.3 128 272-410 156-295 (300)
27 PF13419 HAD_2: Haloacid dehal 97.4 0.00015 3.3E-09 63.8 3.4 94 312-406 75-172 (176)
28 TIGR01672 AphA HAD superfamily 97.3 0.00018 3.8E-09 70.7 3.7 130 271-407 60-207 (237)
29 PF05152 DUF705: Protein of un 97.2 0.00099 2.1E-08 67.1 8.1 72 272-365 120-193 (297)
30 TIGR01664 DNA-3'-Pase DNA 3'-p 97.2 0.00052 1.1E-08 63.5 5.8 107 274-394 13-137 (166)
31 KOG3109 Haloacid dehalogenase- 97.2 0.00016 3.4E-09 70.4 2.1 88 313-402 99-196 (244)
32 TIGR01668 YqeG_hyp_ppase HAD s 97.2 0.00048 1E-08 63.6 5.3 108 272-408 23-133 (170)
33 TIGR01489 DKMTPPase-SF 2,3-dik 97.2 0.00031 6.8E-09 63.8 3.8 86 313-399 71-177 (188)
34 PRK06769 hypothetical protein; 97.2 0.00045 9.8E-09 64.0 4.4 116 275-408 5-134 (173)
35 PRK13582 thrH phosphoserine ph 97.1 9.5E-05 2.1E-09 68.8 -0.3 94 313-407 67-167 (205)
36 TIGR01509 HAD-SF-IA-v3 haloaci 97.1 0.00041 8.9E-09 62.6 3.5 92 313-406 84-179 (183)
37 TIGR02253 CTE7 HAD superfamily 97.1 0.00041 8.8E-09 65.2 3.6 95 312-407 92-191 (221)
38 PRK05446 imidazole glycerol-ph 97.1 0.00094 2E-08 69.4 6.3 121 273-408 1-145 (354)
39 TIGR01993 Pyr-5-nucltdase pyri 97.0 0.00032 6.9E-09 64.5 2.3 92 313-407 83-181 (184)
40 PLN03243 haloacid dehalogenase 97.0 0.00062 1.4E-08 67.4 4.3 98 313-411 108-209 (260)
41 PLN02770 haloacid dehalogenase 97.0 0.00074 1.6E-08 65.7 4.8 97 313-410 107-207 (248)
42 PRK11009 aphA acid phosphatase 97.0 0.0019 4.1E-08 63.6 7.2 130 271-407 60-207 (237)
43 TIGR02254 YjjG/YfnB HAD superf 96.9 0.00067 1.4E-08 63.5 3.6 94 313-407 96-194 (224)
44 TIGR01454 AHBA_synth_RP 3-amin 96.9 0.001 2.3E-08 62.1 4.7 96 313-409 74-173 (205)
45 TIGR01428 HAD_type_II 2-haloal 96.9 0.00072 1.6E-08 62.7 3.6 94 313-407 91-188 (198)
46 PRK13288 pyrophosphatase PpaX; 96.9 0.00082 1.8E-08 63.3 3.8 95 313-408 81-179 (214)
47 TIGR01449 PGP_bact 2-phosphogl 96.9 0.00084 1.8E-08 62.6 3.6 97 313-410 84-184 (213)
48 TIGR01689 EcbF-BcbF capsule bi 96.8 0.0035 7.7E-08 56.1 6.6 84 275-376 2-99 (126)
49 TIGR02137 HSK-PSP phosphoserin 96.7 0.00091 2E-08 63.9 2.4 49 313-362 67-115 (203)
50 PRK10826 2-deoxyglucose-6-phos 96.7 0.0016 3.6E-08 61.7 4.1 100 313-413 91-194 (222)
51 PRK09449 dUMP phosphatase; Pro 96.7 0.0014 3.1E-08 61.9 3.6 93 313-406 94-191 (224)
52 TIGR01670 YrbI-phosphatas 3-de 96.7 0.0017 3.6E-08 59.1 3.9 112 275-406 2-114 (154)
53 PRK09456 ?-D-glucose-1-phospha 96.7 0.0013 2.8E-08 61.5 3.1 100 313-412 83-186 (199)
54 COG0546 Gph Predicted phosphat 96.7 0.0012 2.7E-08 63.1 2.9 94 313-407 88-185 (220)
55 PRK10725 fructose-1-P/6-phosph 96.6 0.0014 3E-08 60.0 2.6 94 313-408 87-183 (188)
56 TIGR02009 PGMB-YQAB-SF beta-ph 96.6 0.0013 2.8E-08 59.9 2.3 92 313-407 87-182 (185)
57 PLN02954 phosphoserine phospha 96.5 0.00084 1.8E-08 63.4 1.0 92 313-406 83-191 (224)
58 PLN02575 haloacid dehalogenase 96.5 0.0033 7.2E-08 65.9 5.1 97 313-410 215-315 (381)
59 PRK11587 putative phosphatase; 96.4 0.0047 1E-07 58.5 5.4 97 313-411 82-182 (218)
60 PRK13225 phosphoglycolate phos 96.4 0.005 1.1E-07 61.4 5.6 95 313-408 141-236 (273)
61 TIGR01422 phosphonatase phosph 96.4 0.0035 7.7E-08 60.7 4.1 98 313-410 98-200 (253)
62 TIGR01663 PNK-3'Pase polynucle 96.4 0.0055 1.2E-07 66.8 5.9 108 273-394 167-294 (526)
63 PRK13226 phosphoglycolate phos 96.3 0.0043 9.3E-08 59.5 4.2 96 312-408 93-192 (229)
64 PRK13222 phosphoglycolate phos 96.2 0.0053 1.1E-07 57.6 4.1 93 313-406 92-188 (226)
65 TIGR01491 HAD-SF-IB-PSPlk HAD- 96.1 0.009 1.9E-07 54.9 5.3 94 313-407 79-186 (201)
66 TIGR01459 HAD-SF-IIA-hyp4 HAD- 96.1 0.0095 2.1E-07 57.7 5.6 93 275-394 9-105 (242)
67 COG0637 Predicted phosphatase/ 96.1 0.0041 9E-08 59.9 3.0 99 313-412 85-187 (221)
68 PRK13223 phosphoglycolate phos 96.0 0.0062 1.4E-07 60.4 4.0 94 313-407 100-197 (272)
69 COG1011 Predicted hydrolase (H 95.9 0.01 2.2E-07 55.7 4.8 84 313-397 98-184 (229)
70 TIGR01533 lipo_e_P4 5'-nucleot 95.9 0.0058 1.3E-07 61.2 3.3 93 272-365 73-173 (266)
71 PRK10563 6-phosphogluconate ph 95.9 0.0043 9.4E-08 58.5 2.3 95 313-410 87-185 (221)
72 PRK09484 3-deoxy-D-manno-octul 95.9 0.011 2.4E-07 55.2 4.9 114 273-407 20-135 (183)
73 TIGR02247 HAD-1A3-hyp Epoxide 95.9 0.0034 7.4E-08 58.8 1.4 99 312-411 92-196 (211)
74 PLN02779 haloacid dehalogenase 95.9 0.0089 1.9E-07 59.8 4.4 97 313-410 143-245 (286)
75 PRK11133 serB phosphoserine ph 95.8 0.0026 5.7E-08 65.1 0.4 95 313-408 180-288 (322)
76 PRK13478 phosphonoacetaldehyde 95.8 0.012 2.5E-07 57.8 4.9 98 313-410 100-202 (267)
77 TIGR03351 PhnX-like phosphonat 95.8 0.0087 1.9E-07 56.3 3.7 95 313-407 86-186 (220)
78 PRK08238 hypothetical protein; 95.8 0.0092 2E-07 64.4 4.2 48 313-364 71-119 (479)
79 TIGR02252 DREG-2 REG-2-like, H 95.8 0.009 1.9E-07 55.5 3.6 90 314-405 105-199 (203)
80 PHA02597 30.2 hypothetical pro 95.7 0.0047 1E-07 57.4 1.4 96 313-410 73-173 (197)
81 PLN02940 riboflavin kinase 95.6 0.0086 1.9E-07 62.5 3.0 95 313-408 92-191 (382)
82 TIGR01990 bPGM beta-phosphoglu 95.5 0.0093 2E-07 54.2 2.8 91 314-407 87-181 (185)
83 TIGR01691 enolase-ppase 2,3-di 95.5 0.0093 2E-07 58.0 3.0 95 313-407 94-192 (220)
84 TIGR01548 HAD-SF-IA-hyp1 haloa 95.3 0.03 6.5E-07 52.2 5.5 81 315-396 107-190 (197)
85 TIGR01549 HAD-SF-IA-v1 haloaci 95.3 0.024 5.3E-07 50.2 4.5 82 313-397 63-147 (154)
86 COG0560 SerB Phosphoserine pho 95.1 0.034 7.4E-07 53.6 5.4 85 313-398 76-174 (212)
87 PLN02811 hydrolase 95.1 0.017 3.8E-07 54.8 3.1 97 313-410 77-183 (220)
88 PLN02919 haloacid dehalogenase 94.8 0.039 8.4E-07 64.9 5.6 97 315-411 162-262 (1057)
89 PF08645 PNK3P: Polynucleotide 94.7 0.048 1E-06 50.3 4.9 103 275-395 1-129 (159)
90 COG0561 Cof Predicted hydrolas 94.7 0.1 2.2E-06 50.8 7.3 58 274-354 3-61 (264)
91 PRK09552 mtnX 2-hydroxy-3-keto 94.7 0.07 1.5E-06 50.8 6.1 96 313-408 73-184 (219)
92 PTZ00445 p36-lilke protein; Pr 94.6 0.022 4.8E-07 55.5 2.5 132 271-411 40-205 (219)
93 PRK06698 bifunctional 5'-methy 94.4 0.037 7.9E-07 58.9 3.9 92 313-407 329-423 (459)
94 COG0241 HisB Histidinol phosph 94.3 0.054 1.2E-06 51.5 4.4 125 274-412 5-153 (181)
95 PF08282 Hydrolase_3: haloacid 94.3 0.11 2.3E-06 48.5 6.3 54 277-353 1-55 (254)
96 PF13344 Hydrolase_6: Haloacid 94.3 0.084 1.8E-06 45.0 5.1 50 277-350 1-51 (101)
97 PRK00192 mannosyl-3-phosphogly 94.2 0.13 2.9E-06 50.6 7.2 57 274-353 4-61 (273)
98 TIGR01493 HAD-SF-IA-v2 Haloaci 93.9 0.016 3.5E-07 52.5 -0.1 76 313-395 89-167 (175)
99 PRK03669 mannosyl-3-phosphogly 93.7 0.21 4.5E-06 49.2 7.5 59 272-353 5-64 (271)
100 TIGR02726 phenyl_P_delta pheny 93.6 0.12 2.5E-06 48.4 5.2 114 274-407 7-121 (169)
101 TIGR03333 salvage_mtnX 2-hydro 93.5 0.13 2.8E-06 48.8 5.5 88 312-399 68-171 (214)
102 TIGR01487 SPP-like sucrose-pho 93.5 0.22 4.8E-06 47.0 6.9 57 275-354 2-59 (215)
103 TIGR01544 HAD-SF-IE haloacid d 93.4 0.16 3.4E-06 51.4 6.1 104 313-417 120-248 (277)
104 TIGR02461 osmo_MPG_phos mannos 93.3 0.21 4.6E-06 48.3 6.6 54 276-353 1-55 (225)
105 PRK10513 sugar phosphate phosp 93.1 0.26 5.5E-06 48.0 6.9 57 274-353 3-60 (270)
106 PRK10530 pyridoxal phosphate ( 92.8 0.35 7.5E-06 46.8 7.3 57 275-354 4-61 (272)
107 PRK01158 phosphoglycolate phos 92.7 0.42 9.1E-06 45.1 7.6 57 275-354 4-61 (230)
108 TIGR00099 Cof-subfamily Cof su 92.7 0.28 6.1E-06 47.4 6.5 55 276-353 1-56 (256)
109 PF09419 PGP_phosphatase: Mito 92.5 0.28 6E-06 46.2 5.9 96 269-394 36-146 (168)
110 TIGR02463 MPGP_rel mannosyl-3- 92.3 0.3 6.6E-06 46.1 6.1 54 277-353 2-56 (221)
111 PRK10976 putative hydrolase; P 91.9 0.47 1E-05 46.1 7.0 56 275-353 3-59 (266)
112 PRK15126 thiamin pyrimidine py 91.8 0.46 9.9E-06 46.5 6.9 57 275-354 3-60 (272)
113 smart00775 LNS2 LNS2 domain. T 91.7 0.38 8.2E-06 44.2 5.8 62 276-350 1-67 (157)
114 TIGR01484 HAD-SF-IIB HAD-super 91.7 0.35 7.6E-06 45.0 5.6 54 276-351 1-55 (204)
115 COG3882 FkbH Predicted enzyme 91.7 0.2 4.3E-06 54.2 4.4 129 271-413 219-357 (574)
116 TIGR01486 HAD-SF-IIB-MPGP mann 91.6 0.39 8.5E-06 46.7 6.1 55 276-353 1-56 (256)
117 TIGR01456 CECR5 HAD-superfamil 91.5 0.31 6.6E-06 49.7 5.4 53 275-351 1-62 (321)
118 COG2179 Predicted hydrolase of 91.1 0.23 4.9E-06 47.0 3.7 119 265-412 19-142 (175)
119 TIGR01488 HAD-SF-IB Haloacid D 90.8 0.67 1.4E-05 41.7 6.4 49 313-362 72-121 (177)
120 PF06888 Put_Phosphatase: Puta 90.7 0.34 7.3E-06 47.9 4.6 49 313-362 70-121 (234)
121 PRK10444 UMP phosphatase; Prov 90.7 0.42 9E-06 47.1 5.3 53 276-352 3-56 (248)
122 TIGR01482 SPP-subfamily Sucros 90.3 0.74 1.6E-05 43.2 6.5 53 277-352 1-54 (225)
123 PRK10187 trehalose-6-phosphate 90.1 0.64 1.4E-05 46.1 6.1 59 274-350 14-74 (266)
124 PRK10748 flavin mononucleotide 90.1 0.18 3.8E-06 48.8 2.1 89 313-407 112-204 (238)
125 TIGR01458 HAD-SF-IIA-hyp3 HAD- 89.4 0.48 1E-05 46.7 4.5 46 276-341 3-49 (257)
126 PF11019 DUF2608: Protein of u 89.3 0.33 7.3E-06 48.2 3.4 102 312-413 79-211 (252)
127 PTZ00174 phosphomannomutase; P 89.2 0.98 2.1E-05 44.0 6.5 52 274-348 5-57 (247)
128 PLN02645 phosphoglycolate phos 88.7 0.57 1.2E-05 47.5 4.7 53 274-350 28-81 (311)
129 PLN02423 phosphomannomutase 88.4 1.1 2.5E-05 43.8 6.4 55 272-352 5-59 (245)
130 TIGR01452 PGP_euk phosphoglyco 88.3 0.74 1.6E-05 45.7 5.1 41 275-339 3-44 (279)
131 PRK12702 mannosyl-3-phosphogly 87.6 1.5 3.2E-05 45.0 6.8 57 275-354 2-59 (302)
132 TIGR01490 HAD-SF-IB-hyp1 HAD-s 87.2 0.77 1.7E-05 42.4 4.2 49 313-362 86-135 (202)
133 TIGR01485 SPP_plant-cyano sucr 86.4 1.4 3E-05 42.7 5.6 60 274-353 1-61 (249)
134 TIGR01457 HAD-SF-IIA-hyp2 HAD- 85.4 1.4 3.1E-05 43.0 5.2 40 276-339 3-43 (249)
135 PLN02887 hydrolase family prot 84.3 2.4 5.3E-05 47.1 6.9 58 273-353 307-365 (580)
136 TIGR01460 HAD-SF-IIA Haloacid 83.9 1.5 3.2E-05 42.6 4.6 50 277-350 1-55 (236)
137 COG0647 NagD Predicted sugar p 83.7 1.6 3.5E-05 44.0 4.8 53 274-350 8-61 (269)
138 PRK14502 bifunctional mannosyl 83.3 4.5 9.8E-05 45.9 8.5 60 271-353 413-473 (694)
139 COG4359 Uncharacterized conser 82.6 3.2 7E-05 40.2 6.0 41 313-353 72-113 (220)
140 KOG3120 Predicted haloacid deh 82.2 0.69 1.5E-05 45.7 1.5 40 313-352 83-124 (256)
141 PLN02151 trehalose-phosphatase 81.8 2.7 5.8E-05 44.1 5.7 60 271-348 95-154 (354)
142 TIGR00685 T6PP trehalose-phosp 81.7 1.4 3.1E-05 42.8 3.5 48 273-338 2-51 (244)
143 COG2503 Predicted secreted aci 81.6 1.5 3.3E-05 43.9 3.6 80 271-351 76-161 (274)
144 PLN02580 trehalose-phosphatase 80.9 3 6.5E-05 44.2 5.7 61 271-349 116-176 (384)
145 PLN03017 trehalose-phosphatase 79.9 3.3 7.3E-05 43.6 5.7 60 271-348 108-167 (366)
146 COG1877 OtsB Trehalose-6-phosp 79.0 3.9 8.4E-05 41.3 5.6 61 270-348 14-76 (266)
147 TIGR02244 HAD-IG-Ncltidse HAD 78.7 2.8 6.1E-05 43.7 4.6 53 310-362 180-240 (343)
148 TIGR01675 plant-AP plant acid 78.3 5.4 0.00012 39.4 6.3 92 272-364 75-172 (229)
149 PF00702 Hydrolase: haloacid d 76.8 3 6.4E-05 38.2 3.8 81 311-395 124-206 (215)
150 PRK10725 fructose-1-P/6-phosph 75.7 1.6 3.6E-05 39.7 1.8 16 274-289 5-20 (188)
151 PF03767 Acid_phosphat_B: HAD 74.7 3.2 6.8E-05 40.6 3.6 73 272-350 70-152 (229)
152 PF06941 NT5C: 5' nucleotidase 74.7 2.4 5.1E-05 39.6 2.6 80 313-407 72-158 (191)
153 PRK11587 putative phosphatase; 74.0 1.7 3.8E-05 41.0 1.6 15 275-289 4-18 (218)
154 TIGR01511 ATPase-IB1_Cu copper 73.9 5.8 0.00013 43.7 5.8 77 312-398 403-480 (562)
155 PRK11590 hypothetical protein; 71.7 2.2 4.9E-05 40.4 1.7 39 313-351 94-134 (211)
156 TIGR01548 HAD-SF-IA-hyp1 haloa 71.3 1.8 4E-05 40.1 1.0 14 276-289 2-15 (197)
157 PHA02597 30.2 hypothetical pro 71.0 2.1 4.6E-05 39.6 1.4 14 275-288 3-16 (197)
158 TIGR01993 Pyr-5-nucltdase pyri 70.7 2.3 5E-05 38.9 1.5 14 276-289 2-15 (184)
159 PRK13288 pyrophosphatase PpaX; 70.5 2.4 5.2E-05 39.7 1.6 15 275-289 4-18 (214)
160 PRK13225 phosphoglycolate phos 69.9 2.3 5E-05 42.5 1.4 16 274-289 62-77 (273)
161 TIGR02253 CTE7 HAD superfamily 69.3 2.7 5.9E-05 39.3 1.7 15 275-289 3-17 (221)
162 KOG2914 Predicted haloacid-hal 67.9 3 6.5E-05 41.0 1.7 92 312-404 90-189 (222)
163 PRK11590 hypothetical protein; 67.5 8.1 0.00017 36.6 4.5 17 273-289 5-21 (211)
164 PRK14501 putative bifunctional 67.4 9.8 0.00021 43.2 5.9 62 271-350 489-552 (726)
165 TIGR03351 PhnX-like phosphonat 67.4 2.9 6.3E-05 39.2 1.5 15 275-289 2-16 (220)
166 TIGR02009 PGMB-YQAB-SF beta-ph 67.1 2.9 6.2E-05 37.8 1.3 15 275-289 2-16 (185)
167 PF05116 S6PP: Sucrose-6F-phos 67.1 8.6 0.00019 37.7 4.7 53 274-350 2-56 (247)
168 PRK13226 phosphoglycolate phos 66.4 2.9 6.4E-05 40.0 1.3 16 274-289 12-27 (229)
169 PRK13223 phosphoglycolate phos 65.5 3.6 7.9E-05 40.8 1.8 16 274-289 13-28 (272)
170 TIGR02252 DREG-2 REG-2-like, H 65.2 3.2 6.9E-05 38.4 1.3 14 276-289 2-15 (203)
171 TIGR01422 phosphonatase phosph 65.1 3.7 8.1E-05 39.6 1.7 15 275-289 3-17 (253)
172 TIGR01545 YfhB_g-proteo haloac 64.9 14 0.00031 35.3 5.7 38 313-350 93-132 (210)
173 PLN02770 haloacid dehalogenase 64.6 3.7 8.1E-05 39.9 1.6 15 275-289 23-37 (248)
174 PRK10748 flavin mononucleotide 64.4 3.8 8.3E-05 39.5 1.7 15 275-289 11-25 (238)
175 PRK13478 phosphonoacetaldehyde 64.3 3.7 8E-05 40.2 1.6 15 275-289 5-19 (267)
176 TIGR01549 HAD-SF-IA-v1 haloaci 64.3 2.9 6.3E-05 36.8 0.8 14 276-289 1-14 (154)
177 PLN03243 haloacid dehalogenase 63.6 4.4 9.5E-05 40.2 1.9 19 271-289 21-39 (260)
178 TIGR01525 ATPase-IB_hvy heavy 62.8 12 0.00026 41.0 5.4 78 312-398 382-461 (556)
179 TIGR01990 bPGM beta-phosphoglu 62.2 3.7 8E-05 37.1 1.1 13 277-289 2-14 (185)
180 TIGR01454 AHBA_synth_RP 3-amin 61.8 3.2 6.9E-05 38.7 0.6 13 277-289 1-13 (205)
181 TIGR02471 sucr_syn_bact_C sucr 61.8 12 0.00025 35.9 4.5 13 276-288 1-13 (236)
182 COG3769 Predicted hydrolase (H 60.2 26 0.00057 35.0 6.5 58 274-355 7-65 (274)
183 TIGR01449 PGP_bact 2-phosphogl 60.2 3.5 7.7E-05 38.2 0.6 13 277-289 1-13 (213)
184 PLN02779 haloacid dehalogenase 59.6 5 0.00011 40.2 1.6 17 273-289 39-55 (286)
185 PRK10826 2-deoxyglucose-6-phos 59.5 5.5 0.00012 37.6 1.8 16 274-289 7-22 (222)
186 TIGR01493 HAD-SF-IA-v2 Haloaci 58.8 4.7 0.0001 36.3 1.1 13 277-289 2-14 (175)
187 PRK09449 dUMP phosphatase; Pro 58.8 4.9 0.00011 37.8 1.3 14 275-288 4-17 (224)
188 TIGR01428 HAD_type_II 2-haloal 58.7 5 0.00011 37.0 1.3 14 276-289 3-16 (198)
189 TIGR01491 HAD-SF-IB-PSPlk HAD- 58.6 5.8 0.00012 36.3 1.7 15 274-288 4-18 (201)
190 TIGR02254 YjjG/YfnB HAD superf 58.5 5 0.00011 37.4 1.3 15 275-289 2-16 (224)
191 TIGR02247 HAD-1A3-hyp Epoxide 58.3 5.6 0.00012 37.1 1.6 15 275-289 3-17 (211)
192 PF13419 HAD_2: Haloacid dehal 58.0 4.9 0.00011 35.0 1.1 13 277-289 1-13 (176)
193 PRK13222 phosphoglycolate phos 57.7 5.2 0.00011 37.3 1.3 15 275-289 7-21 (226)
194 COG4502 5'(3')-deoxyribonucleo 57.6 28 0.00061 32.6 5.9 81 313-413 67-156 (180)
195 TIGR01680 Veg_Stor_Prot vegeta 56.0 23 0.0005 36.0 5.6 81 273-354 100-186 (275)
196 TIGR01509 HAD-SF-IA-v3 haloaci 55.3 5.4 0.00012 35.7 0.9 13 277-289 2-14 (183)
197 PRK10563 6-phosphogluconate ph 54.8 6.8 0.00015 36.8 1.6 16 274-289 4-19 (221)
198 TIGR01512 ATPase-IB2_Cd heavy 53.7 10 0.00022 41.4 2.9 79 312-399 360-440 (536)
199 PF12710 HAD: haloacid dehalog 53.0 12 0.00027 33.7 2.9 47 315-361 86-138 (192)
200 PF08235 LNS2: LNS2 (Lipin/Ned 51.4 35 0.00077 31.9 5.6 63 276-350 1-64 (157)
201 PF02358 Trehalose_PPase: Treh 50.2 24 0.00053 33.9 4.6 50 278-345 1-52 (235)
202 COG0637 Predicted phosphatase/ 49.6 9.3 0.0002 36.8 1.6 15 275-289 3-17 (221)
203 KOG3085 Predicted hydrolase (H 47.8 9.4 0.0002 38.0 1.3 84 311-399 111-201 (237)
204 PLN02205 alpha,alpha-trehalose 45.1 37 0.0008 39.7 5.7 59 272-350 594-654 (854)
205 PF05822 UMPH-1: Pyrimidine 5' 44.8 24 0.00052 35.4 3.6 102 312-414 88-213 (246)
206 PLN03063 alpha,alpha-trehalose 43.7 43 0.00092 38.8 5.9 64 271-349 504-569 (797)
207 PRK06698 bifunctional 5'-methy 43.6 9.9 0.00022 40.5 0.8 15 275-289 242-256 (459)
208 PLN02575 haloacid dehalogenase 43.2 11 0.00025 39.8 1.2 18 272-289 129-146 (381)
209 PRK09552 mtnX 2-hydroxy-3-keto 42.0 14 0.0003 35.1 1.5 16 274-289 3-18 (219)
210 TIGR01545 YfhB_g-proteo haloac 41.4 15 0.00032 35.3 1.5 16 274-289 5-20 (210)
211 PLN02940 riboflavin kinase 41.1 19 0.0004 37.9 2.3 16 274-289 11-26 (382)
212 COG1011 Predicted hydrolase (H 40.4 17 0.00037 33.9 1.8 16 274-289 4-19 (229)
213 PRK09456 ?-D-glucose-1-phospha 39.6 16 0.00035 33.9 1.5 14 276-289 2-15 (199)
214 TIGR02826 RNR_activ_nrdG3 anae 37.8 75 0.0016 29.1 5.5 73 301-393 64-138 (147)
215 PLN02382 probable sucrose-phos 37.7 20 0.00043 38.2 1.9 17 272-288 7-23 (413)
216 KOG2134 Polynucleotide kinase 36.9 50 0.0011 35.4 4.7 57 273-339 74-130 (422)
217 PF08484 Methyltransf_14: C-me 35.9 1E+02 0.0022 28.6 6.2 66 315-411 53-120 (160)
218 PLN03064 alpha,alpha-trehalose 35.5 69 0.0015 37.9 6.0 71 271-350 588-660 (934)
219 PF05761 5_nucleotid: 5' nucle 34.1 68 0.0015 34.8 5.3 53 310-362 179-240 (448)
220 PLN02177 glycerol-3-phosphate 33.0 35 0.00075 37.5 2.9 23 331-353 124-147 (497)
221 PF13701 DDE_Tnp_1_4: Transpos 32.2 1.1E+02 0.0023 33.2 6.4 83 273-355 138-242 (448)
222 TIGR01488 HAD-SF-IB Haloacid D 30.7 23 0.00051 31.6 1.0 13 277-289 2-14 (177)
223 PF12710 HAD: haloacid dehalog 29.3 30 0.00064 31.2 1.4 13 277-289 1-13 (192)
224 TIGR01490 HAD-SF-IB-hyp1 HAD-s 27.9 29 0.00064 31.9 1.1 12 277-288 2-13 (202)
225 cd06537 CIDE_N_B CIDE_N domain 25.1 1.1E+02 0.0024 25.8 3.9 15 274-288 39-53 (81)
226 cd06539 CIDE_N_A CIDE_N domain 23.6 1.2E+02 0.0026 25.4 3.8 15 274-288 40-54 (78)
227 PRK10671 copA copper exporting 22.8 69 0.0015 37.1 3.1 77 314-399 650-727 (834)
228 PLN02919 haloacid dehalogenase 22.4 50 0.0011 39.5 1.9 18 272-289 73-90 (1057)
229 smart00266 CAD Domains present 21.0 1.3E+02 0.0029 24.9 3.5 15 274-288 38-52 (74)
230 cd06536 CIDE_N_ICAD CIDE_N dom 21.0 1.5E+02 0.0032 25.0 3.8 16 273-288 41-56 (80)
231 cd06538 CIDE_N_FSP27 CIDE_N do 20.6 1.3E+02 0.0029 25.2 3.5 15 274-288 39-53 (79)
232 cd01615 CIDE_N CIDE_N domain, 20.1 1.5E+02 0.0031 24.8 3.7 16 273-288 39-54 (78)
No 1
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=100.00 E-value=1.2e-48 Score=383.33 Aligned_cols=180 Identities=59% Similarity=0.969 Sum_probs=172.6
Q ss_pred CCccCCCCceEEEEecCccccccc--ccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCchHHH
Q 013254 266 PKETQGRKSVTLVLDLDETLVHST--LEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYA 343 (447)
Q Consensus 266 P~~~~~~kkltLVLDLDeTLVhSs--~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~YEIvIfTas~~~YA 343 (447)
|......+|++||||||||||||+ .++...++|.+++.+++..+.+||.+|||+++||++++++||++||||+.+.||
T Consensus 81 ~~~~~~~~kk~lVLDLDeTLvHss~~~~~~~~~d~~~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~~e~v~FTAs~~~Ya 160 (262)
T KOG1605|consen 81 PLRLATVGRKTLVLDLDETLVHSSLNLKPIVNADFTVPVEIDGHIHQVYVRKRPHVDEFLSRVSKWYELVLFTASLEVYA 160 (262)
T ss_pred CcccccCCCceEEEeCCCcccccccccCCCCCcceeeeeeeCCcceEEEEEcCCCHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 344457789999999999999999 777789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCchhhccCCCceeeeccccCCCCchHHHHHH
Q 013254 344 AQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWFDDPSDCSLISLL 423 (447)
Q Consensus 344 ~~ILd~LDP~~~lf~~rLyRe~C~~~~g~yiKDLs~LgrdlskVIIIDDsp~~~~~q~eNgIpI~~~~gd~~D~eLl~Ll 423 (447)
.+|++.|||.+++|++|+||++|.+.+|.|+|||+.+|+++++||||||+|.+|.+||+|||||++|++|+.|.||++|+
T Consensus 161 ~~v~D~LD~~~~i~~~RlyR~~C~~~~g~yvKdls~~~~dL~~viIiDNsP~sy~~~p~NgIpI~sw~~d~~D~eLL~Ll 240 (262)
T KOG1605|consen 161 DPLLDILDPDRKIISHRLYRDSCTLKDGNYVKDLSVLGRDLSKVIIVDNSPQSYRLQPENGIPIKSWFDDPTDTELLKLL 240 (262)
T ss_pred HHHHHHccCCCCeeeeeecccceEeECCcEEEEcceeccCcccEEEEcCChHHhccCccCCCcccccccCCChHHHHHHH
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCcHHHHHhhhCC
Q 013254 424 PFLDILADAEDVRPIIAKTFGN 445 (447)
Q Consensus 424 pfLe~L~~~~DVR~vL~k~f~~ 445 (447)
|||+.|+.++|||++|+++|+.
T Consensus 241 pfLe~L~~~~Dvr~~l~~~~~~ 262 (262)
T KOG1605|consen 241 PFLEALAFVDDVRPILARRFGN 262 (262)
T ss_pred HHHHHhcccccHHHHHHHhhcC
Confidence 9999999999999999999974
No 2
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=1.3e-40 Score=305.11 Aligned_cols=161 Identities=57% Similarity=0.931 Sum_probs=153.7
Q ss_pred ceEEEEecCcccccccccccC-CCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCchHHHHHHHHHHCC
Q 013254 274 SVTLVLDLDETLVHSTLEYCD-DADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDP 352 (447)
Q Consensus 274 kltLVLDLDeTLVhSs~~~~~-~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~YEIvIfTas~~~YA~~ILd~LDP 352 (447)
|++|||||||||||+++.+.. .++|.+.+.+++...++||++|||+.+||++|+++|||+|||++.+.||++|++.|||
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~~~yA~~il~~ldp 80 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASLEEYADPVLDILDR 80 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCcHHHHHHHHHHHCc
Confidence 579999999999999988765 6788888888888899999999999999999999999999999999999999999999
Q ss_pred CCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCchhhccCCCceeeeccccCCCCchHHHHHHHHHHHccCC
Q 013254 353 DGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWFDDPSDCSLISLLPFLDILADA 432 (447)
Q Consensus 353 ~~~lf~~rLyRe~C~~~~g~yiKDLs~LgrdlskVIIIDDsp~~~~~q~eNgIpI~~~~gd~~D~eLl~LlpfLe~L~~~ 432 (447)
.+.+|++++||++|....+.|.|||+.+|++++++|||||++..|..|++|||+|.+|.|+.+|++|++|++||+.|+..
T Consensus 81 ~~~~f~~~l~r~~~~~~~~~~~K~L~~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~~~~~D~~L~~l~~~L~~l~~~ 160 (162)
T TIGR02251 81 GGKVISRRLYRESCVFTNGKYVKDLSLVGKDLSKVIIIDNSPYSYSLQPDNAIPIKSWFGDPNDTELLNLIPFLEGLRFE 160 (162)
T ss_pred CCCEEeEEEEccccEEeCCCEEeEchhcCCChhhEEEEeCChhhhccCccCEeecCCCCCCCCHHHHHHHHHHHHHHhcc
Confidence 98899999999999998888999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q 013254 433 ED 434 (447)
Q Consensus 433 ~D 434 (447)
+|
T Consensus 161 ~~ 162 (162)
T TIGR02251 161 DD 162 (162)
T ss_pred CC
Confidence 76
No 3
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=100.00 E-value=1.3e-38 Score=287.38 Aligned_cols=158 Identities=51% Similarity=0.856 Sum_probs=130.6
Q ss_pred eEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCchHHHHHHHHHHCCCC
Q 013254 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDG 354 (447)
Q Consensus 275 ltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~YEIvIfTas~~~YA~~ILd~LDP~~ 354 (447)
++|||||||||||+...+....++... . ....++|++|||+++||++++++|||+|||++.+.||++|++.|||.+
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~---~-~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~~ya~~v~~~ldp~~ 76 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKII---D-QRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASEEYAEPVLDALDPNG 76 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEE---T-EEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-HHHHHHHHHHHTTTT
T ss_pred CEEEEeCCCcEEEEeecCCCCccccee---c-cccceeEeeCchHHHHHHHHHHhceEEEEEeehhhhhhHHHHhhhhhc
Confidence 689999999999998765443333222 2 566889999999999999999999999999999999999999999988
Q ss_pred CeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCchhhccCCCceeeeccccCC-CCchHHHHHHHHHHHccCCC
Q 013254 355 KLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWFDD-PSDCSLISLLPFLDILADAE 433 (447)
Q Consensus 355 ~lf~~rLyRe~C~~~~g~yiKDLs~LgrdlskVIIIDDsp~~~~~q~eNgIpI~~~~gd-~~D~eLl~LlpfLe~L~~~~ 433 (447)
.+|.+++||++|....|.++|||+.+|+++++||||||++.+|..|++|+|+|++|.++ +.|++|++|++||+.|+.++
T Consensus 77 ~~~~~~~~r~~~~~~~~~~~KdL~~l~~~~~~vvivDD~~~~~~~~~~N~i~v~~f~~~~~~D~~L~~l~~~L~~l~~~~ 156 (159)
T PF03031_consen 77 KLFSRRLYRDDCTFDKGSYIKDLSKLGRDLDNVVIVDDSPRKWALQPDNGIPVPPFFGDTPNDRELLRLLPFLEELAKED 156 (159)
T ss_dssp SSEEEEEEGGGSEEETTEEE--GGGSSS-GGGEEEEES-GGGGTTSGGGEEE----SSCHTT--HHHHHHHHHHHHHTHS
T ss_pred cccccccccccccccccccccchHHHhhccccEEEEeCCHHHeeccCCceEEeccccCCCcchhHHHHHHHHHHHhCccc
Confidence 89999999999998888889999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CcH
Q 013254 434 DVR 436 (447)
Q Consensus 434 DVR 436 (447)
|||
T Consensus 157 Dvr 159 (159)
T PF03031_consen 157 DVR 159 (159)
T ss_dssp -CH
T ss_pred CCC
Confidence 998
No 4
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=100.00 E-value=2.1e-36 Score=286.26 Aligned_cols=159 Identities=23% Similarity=0.280 Sum_probs=136.7
Q ss_pred CCCceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCchHHHHHHHHHH
Q 013254 271 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDIL 350 (447)
Q Consensus 271 ~~kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~YEIvIfTas~~~YA~~ILd~L 350 (447)
..+|++|||||||||||+... ..+.++.+|||+++||++++++|||+||||+++.||+.+++.|
T Consensus 18 ~~~kklLVLDLDeTLvh~~~~----------------~~~~~~~kRP~l~eFL~~~~~~feIvVwTAa~~~ya~~~l~~l 81 (195)
T TIGR02245 18 REGKKLLVLDIDYTLFDHRSP----------------AETGEELMRPYLHEFLTSAYEDYDIVIWSATSMKWIEIKMTEL 81 (195)
T ss_pred CCCCcEEEEeCCCceEccccc----------------CCCceEEeCCCHHHHHHHHHhCCEEEEEecCCHHHHHHHHHHh
Confidence 567899999999999997421 1245789999999999999999999999999999999999999
Q ss_pred CCCC-CeeeeEEEcccce------eeCCc-eeecccccC------CCCCcEEEEECCchhhccCCCceeeeccccC----
Q 013254 351 DPDG-KLISRRVYRESCI------FSDGT-YTKDLTVLG------VDLAKVAIIDNSPQVFRLQVNNGIPIESWFD---- 412 (447)
Q Consensus 351 DP~~-~lf~~rLyRe~C~------~~~g~-yiKDLs~Lg------rdlskVIIIDDsp~~~~~q~eNgIpI~~~~g---- 412 (447)
++.+ ..+..++++++|. ...|. ++|||+.++ .++++||||||+|.++.+||+|||+|++|++
T Consensus 82 ~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i~I~~f~~~~~~ 161 (195)
T TIGR02245 82 GVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKNTIMFDDLRRNFLMNPQNGLKIRPFKKAHAN 161 (195)
T ss_pred cccCCccceEEEEeccccceeeEeeccCcEEEeecHHhhhhcccCCCcccEEEEeCCHHHHhcCCCCccccCCccccCCC
Confidence 8643 2355667778883 22454 599999873 3889999999999999999999999999995
Q ss_pred CCCchHHHHHHHHHHHccCCCCcHHHHHhhhCC
Q 013254 413 DPSDCSLISLLPFLDILADAEDVRPIIAKTFGN 445 (447)
Q Consensus 413 d~~D~eLl~LlpfLe~L~~~~DVR~vL~k~f~~ 445 (447)
++.|.||+.|+|||+.|+.++|||++++++|..
T Consensus 162 ~~~D~eL~~L~~yL~~la~~~Dvr~~~~~~w~~ 194 (195)
T TIGR02245 162 RGTDQELLKLTQYLKTIAELEDFSSLDHKEWER 194 (195)
T ss_pred CcccHHHHHHHHHHHHHhcCcccchhhhccccc
Confidence 579999999999999999999999999988863
No 5
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=99.97 E-value=1.6e-31 Score=244.61 Aligned_cols=138 Identities=31% Similarity=0.449 Sum_probs=118.1
Q ss_pred CCCceEEEEecCcccccccccccCCCCce------------EEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCC
Q 013254 271 GRKSVTLVLDLDETLVHSTLEYCDDADFT------------FTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTAS 338 (447)
Q Consensus 271 ~~kkltLVLDLDeTLVhSs~~~~~~~df~------------~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~YEIvIfTas 338 (447)
.++|++||||||||||||+..+....... -...|......+++++|||+.+||+++++.|+++|||++
T Consensus 3 ~~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I~T~~ 82 (156)
T TIGR02250 3 REKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHVYTMG 82 (156)
T ss_pred cCCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEEEeCC
Confidence 47899999999999999987654322111 012233336678999999999999999999999999999
Q ss_pred chHHHHHHHHHHCCCCCeeeeEE-EcccceeeCCceeeccc-ccCCCCCcEEEEECCchhhccCCCceeeecccc
Q 013254 339 QSIYAAQLLDILDPDGKLISRRV-YRESCIFSDGTYTKDLT-VLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWF 411 (447)
Q Consensus 339 ~~~YA~~ILd~LDP~~~lf~~rL-yRe~C~~~~g~yiKDLs-~LgrdlskVIIIDDsp~~~~~q~eNgIpI~~~~ 411 (447)
.+.||+++++.|||.+.+|.+|+ +|++|. |.++|||+ .+|+++++||||||++.+|..||+|+|+|++|.
T Consensus 83 ~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~---~~~~KdL~~i~~~d~~~vvivDd~~~~~~~~~~N~i~i~~~~ 154 (156)
T TIGR02250 83 TRAYAQAIAKLIDPDGKYFGDRIISRDESG---SPHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQIEPYN 154 (156)
T ss_pred cHHHHHHHHHHhCcCCCeeccEEEEeccCC---CCccccHHHHcCCCcccEEEEeCCHHHhhcCccCEEEeCCcc
Confidence 99999999999999998997765 599995 78999995 569999999999999999999999999999996
No 6
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.97 E-value=5.9e-32 Score=272.12 Aligned_cols=160 Identities=36% Similarity=0.668 Sum_probs=151.0
Q ss_pred ccCCCCceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCchHHHHHHH
Q 013254 268 ETQGRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLL 347 (447)
Q Consensus 268 ~~~~~kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~YEIvIfTas~~~YA~~IL 347 (447)
++..++++||||+|.++|||..|.. ..+|.+++|||++.||.+++++|||||||+....||.+|+
T Consensus 183 pPy~Qp~yTLVleledvLVhpdws~---------------~tGwRf~kRPgvD~FL~~~a~~yEIVi~sse~gmt~~pl~ 247 (393)
T KOG2832|consen 183 PPYEQPPYTLVLELEDVLVHPDWSY---------------KTGWRFKKRPGVDYFLGHLAKYYEIVVYSSEQGMTVFPLL 247 (393)
T ss_pred CcccCCCceEEEEeeeeEeccchhh---------------hcCceeccCchHHHHHHhhcccceEEEEecCCccchhhhH
Confidence 3457889999999999999998873 3689999999999999999999999999999999999999
Q ss_pred HHHCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCchhhccCCCceeeeccccCCCCchHHHHHHHHHH
Q 013254 348 DILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWFDDPSDCSLISLLPFLD 427 (447)
Q Consensus 348 d~LDP~~~lf~~rLyRe~C~~~~g~yiKDLs~LgrdlskVIIIDDsp~~~~~q~eNgIpI~~~~gd~~D~eLl~LlpfLe 427 (447)
+.|||.| +|+++|||++|.+.+|..+|||+.|+||+++||+||-.+.++.+||+|.|++++|.|+.+|+.|++|++||+
T Consensus 248 d~lDP~g-~IsYkLfr~~t~y~~G~HvKdls~LNRdl~kVivVd~d~~~~~l~P~N~l~l~~W~Gn~dDt~L~dL~~FL~ 326 (393)
T KOG2832|consen 248 DALDPKG-YISYKLFRGATKYEEGHHVKDLSKLNRDLQKVIVVDFDANSYKLQPENMLPLEPWSGNDDDTSLFDLLAFLE 326 (393)
T ss_pred hhcCCcc-eEEEEEecCcccccCccchhhhhhhccccceeEEEEccccccccCcccccccCcCCCCcccchhhhHHHHHH
Confidence 9999997 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccC--CCCcHHHHHhhhC
Q 013254 428 ILAD--AEDVRPIIAKTFG 444 (447)
Q Consensus 428 ~L~~--~~DVR~vL~k~f~ 444 (447)
.|+. ++|||++|+ .|.
T Consensus 327 ~ia~~~~eDvR~vL~-~y~ 344 (393)
T KOG2832|consen 327 YIAQQQVEDVRPVLQ-SYS 344 (393)
T ss_pred HHHHccHHHHHHHHH-Hhc
Confidence 9985 799999994 444
No 7
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.95 E-value=4.6e-29 Score=256.16 Aligned_cols=175 Identities=45% Similarity=0.741 Sum_probs=165.2
Q ss_pred ccCCCCceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCchHHHHHHH
Q 013254 268 ETQGRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLL 347 (447)
Q Consensus 268 ~~~~~kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~YEIvIfTas~~~YA~~IL 347 (447)
.....++++|++|||+||+|+....+...+|...+...+..+.+||.+|||+++||..++++|++++||++.+.||++|+
T Consensus 206 ~~~~~~~k~L~l~lde~l~~S~~~~~~~~df~~~~e~~~~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s~~~y~~~v~ 285 (390)
T COG5190 206 SKSTSPKKTLVLDLDETLVHSSFRYITLLDFLVKVEISLLQHLVYVSKRPELDYFLGKLSKIHELVYFTASVKRYADPVL 285 (390)
T ss_pred hcCCCCccccccCCCccceeeccccccccchhhccccccceeEEEEcCChHHHHHHhhhhhhEEEEEEecchhhhcchHH
Confidence 34556788999999999999998888888888888778788999999999999999999999999999999999999999
Q ss_pred HHHCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCchhhccCCCceeeeccccCCCCchHHHHHHHHHH
Q 013254 348 DILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWFDDPSDCSLISLLPFLD 427 (447)
Q Consensus 348 d~LDP~~~lf~~rLyRe~C~~~~g~yiKDLs~LgrdlskVIIIDDsp~~~~~q~eNgIpI~~~~gd~~D~eLl~LlpfLe 427 (447)
++|++.+ .|++++||++|....|.|+|||..++|++.+|||||++|.+|.+||+|+|+|.+|.+++.|.+|++|++||+
T Consensus 286 d~l~~~k-~~~~~lfr~sc~~~~G~~ikDis~i~r~l~~viiId~~p~SY~~~p~~~i~i~~W~~d~~d~el~~ll~~le 364 (390)
T COG5190 286 DILDSDK-VFSHRLFRESCVSYLGVYIKDISKIGRSLDKVIIIDNSPASYEFHPENAIPIEKWISDEHDDELLNLLPFLE 364 (390)
T ss_pred Hhccccc-eeehhhhcccceeccCchhhhHHhhccCCCceEEeeCChhhhhhCccceeccCcccccccchhhhhhccccc
Confidence 9999998 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccC--CCCcHHHHHhhh
Q 013254 428 ILAD--AEDVRPIIAKTF 443 (447)
Q Consensus 428 ~L~~--~~DVR~vL~k~f 443 (447)
.|.. ..||+.+|..+-
T Consensus 365 ~L~~~~~~d~~~~l~~~~ 382 (390)
T COG5190 365 DLPDRDLKDVSSILQSRL 382 (390)
T ss_pred ccccccchhhhhhhhhhh
Confidence 9998 899999987664
No 8
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.94 E-value=2e-26 Score=207.57 Aligned_cols=145 Identities=49% Similarity=0.859 Sum_probs=129.9
Q ss_pred CceEEEEecCcccccccc---cccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCchHHHHHHHHH
Q 013254 273 KSVTLVLDLDETLVHSTL---EYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDI 349 (447)
Q Consensus 273 kkltLVLDLDeTLVhSs~---~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~YEIvIfTas~~~YA~~ILd~ 349 (447)
+|++|||||||||||+.. .+.....+...+.+......+++++|||+.+||++|.+.|+++|||++.+.||+.+++.
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~~~~~~~~il~~ 80 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAGLRMYADPVLDL 80 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCCcHHHHHHHHHH
Confidence 578999999999999963 22234455666677788889999999999999999999999999999999999999999
Q ss_pred HCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCchhhccCCCceeeeccccCCCCch
Q 013254 350 LDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWFDDPSDC 417 (447)
Q Consensus 350 LDP~~~lf~~rLyRe~C~~~~g~yiKDLs~LgrdlskVIIIDDsp~~~~~q~eNgIpI~~~~gd~~D~ 417 (447)
+++.+.+|...+++++|......|.|+|+.+|++++++|+|||++..|..+++|||+|++|.++++|.
T Consensus 81 l~~~~~~f~~i~~~~d~~~~KP~~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~~f~~~~~d~ 148 (148)
T smart00577 81 LDPKKYFGYRRLFRDECVFVKGKYVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPIKPWFGDPDDT 148 (148)
T ss_pred hCcCCCEeeeEEECccccccCCeEeecHHHcCCChhcEEEEECCHHHhhcCccCEEEecCcCCCCCCC
Confidence 99976677899999999877767999999999999999999999999999999999999999998874
No 9
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.85 E-value=1.2e-21 Score=211.30 Aligned_cols=137 Identities=31% Similarity=0.440 Sum_probs=109.7
Q ss_pred CCceEEEEecCcccccccccccC--------CCCc-------eEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEc
Q 013254 272 RKSVTLVLDLDETLVHSTLEYCD--------DADF-------TFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFT 336 (447)
Q Consensus 272 ~kkltLVLDLDeTLVhSs~~~~~--------~~df-------~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~YEIvIfT 336 (447)
++++.||+|||.||+|+...+.- .... .+.+...+....+||++|||+++||++++++||++|||
T Consensus 144 ~~~L~lv~Dld~tllh~~~~~~l~e~~~~l~~~~~~~~sn~dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyT 223 (635)
T KOG0323|consen 144 RKKLHLVLDLDHTLLHTILKSDLSETEKYLKEEAESVESNKDLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYT 223 (635)
T ss_pred hhcceeehhhhhHHHHhhccchhhhhhhhcccccccccccccceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEe
Confidence 34479999999999999743321 0000 01111113345689999999999999999999999999
Q ss_pred CCchHHHHHHHHHHCCCCCeeeeEEE-cccceeeCCceeeccccc-CCCCCcEEEEECCchhhccCCCceeeecccc
Q 013254 337 ASQSIYAAQLLDILDPDGKLISRRVY-RESCIFSDGTYTKDLTVL-GVDLAKVAIIDNSPQVFRLQVNNGIPIESWF 411 (447)
Q Consensus 337 as~~~YA~~ILd~LDP~~~lf~~rLy-Re~C~~~~g~yiKDLs~L-grdlskVIIIDDsp~~~~~q~eNgIpI~~~~ 411 (447)
.|.+.||..|++.|||.|+||++|++ |+. ......+||..+ .++.++||||||+..+|..++.|.|.|.+|.
T Consensus 224 mg~R~YA~~i~~liDP~~~lF~dRIisrde---~~~~kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~ 297 (635)
T KOG0323|consen 224 MGTRDYALEIAKLIDPEGKYFGDRIISRDE---SPFFKTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYP 297 (635)
T ss_pred ccchHHHHHHHHHhCCCCccccceEEEecC---CCcccccccccCCCCCCccEEEEeCccccccCCCcceEEeeeee
Confidence 99999999999999999999999987 766 344556777766 4678889999999999999998999999984
No 10
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=98.52 E-value=5.1e-08 Score=101.43 Aligned_cols=137 Identities=30% Similarity=0.446 Sum_probs=104.2
Q ss_pred CCCceEEEEecCcccccccccccC----------CCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCch
Q 013254 271 GRKSVTLVLDLDETLVHSTLEYCD----------DADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQS 340 (447)
Q Consensus 271 ~~kkltLVLDLDeTLVhSs~~~~~----------~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~YEIvIfTas~~ 340 (447)
..++..||.|+|.|.+|+...+.. ...+.....+......++++.||++..|+...++.||+.+||.|.+
T Consensus 23 q~~~~~l~~~~~~~~~h~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~i~~~~e~~~~~~~~~ 102 (390)
T COG5190 23 QDKKLILVVDLDQTIIHTTVDPNDPNNVNQSLERTLKSVNDRDPVQEKCAYYVKARPKLFPFLTKISPLYELHIYTMGTR 102 (390)
T ss_pred cCcccccccccccceecccccCCCCCchhhhhhccccchhccccccccccceeeecccccchhhhhchhcceeeEeeccc
Confidence 456788999999999999866511 0011111122233557899999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeeccccc-CCCCCcEEEEECCchhhcc--CCCceeeecc
Q 013254 341 IYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVL-GVDLAKVAIIDNSPQVFRL--QVNNGIPIES 409 (447)
Q Consensus 341 ~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~g~yiKDLs~L-grdlskVIIIDDsp~~~~~--q~eNgIpI~~ 409 (447)
.||+.+.+++||.|++|..+....+ ...+.-.|-++++ ..+.+.++++||++..|.- --.|.++..+
T Consensus 103 ~~~~~~~~i~d~~g~~~~d~~~~~~--~~~~~~~~s~~~l~p~~~n~~vi~~d~~~~~~~~d~~~~~v~~~~ 172 (390)
T COG5190 103 AYAERIAKIIDPTGKLFNDRILSRD--ESGSLSQKSLSRLFPKDQNMVVIIDDRGDVWGVGDMNSNFVAKSP 172 (390)
T ss_pred cchhhhhhccccccccccccccccc--ccccchhhhhhhcCccccccccccccccccCCccchhhhhhcccc
Confidence 9999999999999999988776322 1344556777766 6788999999999999921 2346677766
No 11
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.46 E-value=4.4e-07 Score=85.08 Aligned_cols=138 Identities=14% Similarity=0.064 Sum_probs=92.1
Q ss_pred eEEEEecCcccccccccccCCCCceEEEEecc---eeeeEEEeeCchHHHHHHHhh-cccEEEEEcCC-chHHHHHHHHH
Q 013254 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNM---KEHTVYVKQRPHLKTFLERVA-EMFEVVIFTAS-QSIYAAQLLDI 349 (447)
Q Consensus 275 ltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~---~~~~~~V~lRPgl~eFL~~ls-~~YEIvIfTas-~~~YA~~ILd~ 349 (447)
.++|||||+||..-........-+...-..++ ......+.++||+.++|++|. +.+.+.|.|++ ...++..+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~ 82 (174)
T TIGR01685 3 RVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGT 82 (174)
T ss_pred cEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHh
Confidence 37899999999865533322222211000110 122345788999999999998 56999999998 99999999999
Q ss_pred HCCC--C------CeeeeEEEcccceeeC--Cceeecccc-c--CCCCCcEEEEECCchhhccCCCceeeeccccC
Q 013254 350 LDPD--G------KLISRRVYRESCIFSD--GTYTKDLTV-L--GVDLAKVAIIDNSPQVFRLQVNNGIPIESWFD 412 (447)
Q Consensus 350 LDP~--~------~lf~~rLyRe~C~~~~--g~yiKDLs~-L--grdlskVIIIDDsp~~~~~q~eNgIpI~~~~g 412 (447)
++.. | .+|...+..+...... ....+-+.. + |.+++++++|||++........+|+.+.-...
T Consensus 83 ~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~~ 158 (174)
T TIGR01685 83 FEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCYCPS 158 (174)
T ss_pred CCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEEcCC
Confidence 9865 1 4787777754321100 011222222 2 57889999999999988777788888766533
No 12
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.34 E-value=2.8e-07 Score=81.39 Aligned_cols=110 Identities=15% Similarity=0.143 Sum_probs=74.3
Q ss_pred EEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCC-chHHHHHHHHHHCC-
Q 013254 276 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTAS-QSIYAAQLLDILDP- 352 (447)
Q Consensus 276 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls-~~YEIvIfTas-~~~YA~~ILd~LDP- 352 (447)
.||+||||||+..-..... .+-. .+. . ...||+.++|+++. +.+.++|.|++ .+.|+..+++.+.+
T Consensus 2 li~~DlD~Tl~~~~~~~~~-~~~~----~~~---~---~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~ 70 (128)
T TIGR01681 2 VIVFDLDNTLWTGENIVVG-EDPI----IDL---E---VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDF 70 (128)
T ss_pred EEEEeCCCCCCCCCccccc-CCcc----hhh---H---HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhcccc
Confidence 6899999999876211000 0000 000 0 56899999999997 56999999999 99999999998762
Q ss_pred -----CCCeeeeEEEcccceeeCCceeecccccC--CCCCcEEEEECCchhh
Q 013254 353 -----DGKLISRRVYRESCIFSDGTYTKDLTVLG--VDLAKVAIIDNSPQVF 397 (447)
Q Consensus 353 -----~~~lf~~rLyRe~C~~~~g~yiKDLs~Lg--rdlskVIIIDDsp~~~ 397 (447)
-..+|...+..+.. .....|.+-+..+| ..++++++|||++...
T Consensus 71 ~~i~~l~~~f~~~~~~~~~-pkp~~~~~a~~~lg~~~~p~~~l~igDs~~n~ 121 (128)
T TIGR01681 71 GIIFPLAEYFDPLTIGYWL-PKSPRLVEIALKLNGVLKPKSILFVDDRPDNN 121 (128)
T ss_pred ccchhhHhhhhhhhhcCCC-cHHHHHHHHHHHhcCCCCcceEEEECCCHhHH
Confidence 11245444443221 11224556667789 9999999999998653
No 13
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.17 E-value=6.6e-06 Score=74.31 Aligned_cols=138 Identities=16% Similarity=0.082 Sum_probs=95.9
Q ss_pred EEEEecCcccccccccccCCCCceEEE---Eecc--eeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHH
Q 013254 276 TLVLDLDETLVHSTLEYCDDADFTFTV---FFNM--KEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDI 349 (447)
Q Consensus 276 tLVLDLDeTLVhSs~~~~~~~df~~~i---~~~~--~~~~~~V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~ 349 (447)
.+|||+|+||..-. +...+.-+. ..+. ...+.-|.+||++.+||+++. ..|-+..+|.....-|-++|..
T Consensus 2 ~i~~d~d~t~wdhh----~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLra 77 (164)
T COG4996 2 AIVFDADKTLWDHH----NISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRA 77 (164)
T ss_pred cEEEeCCCcccccc----cchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHH
Confidence 57999999996532 211111111 0111 234567999999999999999 5689999999999999999999
Q ss_pred HCCCCCeeeeEEEcccceeeCCceeeccccc------CCCCCcEEEEECCchhh---ccCCCceeeeccccCCCCchHH
Q 013254 350 LDPDGKLISRRVYRESCIFSDGTYTKDLTVL------GVDLAKVAIIDNSPQVF---RLQVNNGIPIESWFDDPSDCSL 419 (447)
Q Consensus 350 LDP~~~lf~~rLyRe~C~~~~g~yiKDLs~L------grdlskVIIIDDsp~~~---~~q~eNgIpI~~~~gd~~D~eL 419 (447)
||-.+ ||.+.....|-.. .....+-|..+ ...++.+|.+||+...+ .....|.=.++.|.+-..-.+.
T Consensus 78 l~~~~-yFhy~ViePhP~K-~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~~Iwe~~G~V~~~~~~~Di~c~~ei 154 (164)
T COG4996 78 LDLLQ-YFHYIVIEPHPYK-FLMLSQLLREINTERNQKIKPSEIVYLDDRRIHFGNIWEYLGNVKCLEMWKDISCYSEI 154 (164)
T ss_pred hchhh-hEEEEEecCCChh-HHHHHHHHHHHHHhhccccCcceEEEEecccccHHHHHHhcCCeeeeEeecchHHHHHH
Confidence 99987 8988777666321 11222333322 35788999999999776 4467888888888876433333
No 14
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.15 E-value=1.3e-06 Score=73.34 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=73.0
Q ss_pred EEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc-cEEEEEcCCchHHHHHHHHHHCCCC
Q 013254 276 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILDPDG 354 (447)
Q Consensus 276 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~-YEIvIfTas~~~YA~~ILd~LDP~~ 354 (447)
++|||+||||+........ ...+..+|++.+||+++.+. +.++|.|++.+.++..+++.+....
T Consensus 1 ~~vfD~D~tl~~~~~~~~~---------------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~ 65 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE---------------IEELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDD 65 (139)
T ss_pred CeEEccCCceEccCccccc---------------cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCch
Confidence 4799999999876421100 22367899999999999976 9999999999999999999986542
Q ss_pred CeeeeEEEcccceee----------------C---CceeecccccCCCCCcEEEEECCchhhc
Q 013254 355 KLISRRVYRESCIFS----------------D---GTYTKDLTVLGVDLAKVAIIDNSPQVFR 398 (447)
Q Consensus 355 ~lf~~rLyRe~C~~~----------------~---g~yiKDLs~LgrdlskVIIIDDsp~~~~ 398 (447)
++..++..+..... . ..+..-+..++.+.+.++.|+|++.-..
T Consensus 66 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igD~~~d~~ 127 (139)
T cd01427 66 -YFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGVDPEEVLMVGDSLNDIE 127 (139)
T ss_pred -hhhheeccchhhhhcccccccccccccccCCCCHHHHHHHHHHcCCChhhEEEeCCCHHHHH
Confidence 34444443221110 1 1112223445667889999999996543
No 15
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.05 E-value=3.6e-06 Score=73.43 Aligned_cols=113 Identities=20% Similarity=0.213 Sum_probs=76.0
Q ss_pred EEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCc--------hHHHHHH
Q 013254 276 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQ--------SIYAAQL 346 (447)
Q Consensus 276 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls-~~YEIvIfTas~--------~~YA~~I 346 (447)
.|+||+||||++.... . .........|++.++|++|. +.|.++|.|++. ..++..+
T Consensus 2 ~~~~D~dgtL~~~~~~--~-------------~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~ 66 (132)
T TIGR01662 2 GVVLDLDGTLTDDVPY--V-------------DDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARR 66 (132)
T ss_pred EEEEeCCCceecCCCC--C-------------CCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHH
Confidence 7899999999963100 0 00112456899999999997 559999999999 8889999
Q ss_pred HHHHCCCCCeeeeEEEccccee-eCCceeeccccc-CCCCCcEEEEEC-CchhhccCCCceee
Q 013254 347 LDILDPDGKLISRRVYRESCIF-SDGTYTKDLTVL-GVDLAKVAIIDN-SPQVFRLQVNNGIP 406 (447)
Q Consensus 347 Ld~LDP~~~lf~~rLyRe~C~~-~~g~yiKDLs~L-grdlskVIIIDD-sp~~~~~q~eNgIp 406 (447)
++.+.-. +...++...+.. ....|.+-++.+ +.++++++.|+| ...-......+|+.
T Consensus 67 l~~~~l~---~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~ 126 (132)
T TIGR01662 67 LEELGVP---IDVLYACPHCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLA 126 (132)
T ss_pred HHHCCCC---EEEEEECCCCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCe
Confidence 9988754 222223221111 123455666778 589999999999 56555444455544
No 16
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=97.97 E-value=2e-05 Score=79.75 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=84.5
Q ss_pred CCCceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeC-chHHHHHHHhhcc-cEEEEEcCCchHHHHHHHH
Q 013254 271 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQR-PHLKTFLERVAEM-FEVVIFTASQSIYAAQLLD 348 (447)
Q Consensus 271 ~~kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lR-Pgl~eFL~~ls~~-YEIvIfTas~~~YA~~ILd 348 (447)
...+..+|+||||||+-... -|.+| ||+.++|++|.+. +.++|||++.+.++..+++
T Consensus 123 ~~~~kvIvFDLDgTLi~~~~---------------------~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~ 181 (301)
T TIGR01684 123 FEPPHVVVFDLDSTLITDEE---------------------PVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMR 181 (301)
T ss_pred cccceEEEEecCCCCcCCCC---------------------ccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHH
Confidence 34566999999999987532 26679 9999999999975 8999999999999999999
Q ss_pred HHCCCCCeeeeEEEcccceee----------------CCceeeccc-----------------ccCCCC-CcEEEEECCc
Q 013254 349 ILDPDGKLISRRVYRESCIFS----------------DGTYTKDLT-----------------VLGVDL-AKVAIIDNSP 394 (447)
Q Consensus 349 ~LDP~~~lf~~rLyRe~C~~~----------------~g~yiKDLs-----------------~Lgrdl-skVIIIDDsp 394 (447)
.++..+ +|...+..++.... ...+..|.. ..|..- +-+-+|||-+
T Consensus 182 ~lGLd~-YFdvIIs~Gdv~~~kp~~e~~d~~~~~~~~~~~f~~d~~~~~~lPKSprvvl~yL~~~gvn~~KtitLVDDl~ 260 (301)
T TIGR01684 182 KVKLDR-YFDIIISGGHKAEEYSTMSTEDRQYRYVFTKTPFYLNTTDGKRLPKSPRVVLWYLYDLGVNYFKSITLVDDLA 260 (301)
T ss_pred HcCCCc-ccCEEEECCccccCCCCccccccccceEEecCCeEEeCCCCCcCCCCCeehHHHHHHcCCceeeeEEEeccCc
Confidence 999886 77666664432221 122333331 223333 3357899988
Q ss_pred hhhccCCCceeeeccccCCCCc
Q 013254 395 QVFRLQVNNGIPIESWFDDPSD 416 (447)
Q Consensus 395 ~~~~~q~eNgIpI~~~~gd~~D 416 (447)
..= ..-+|-+.++..-...+|
T Consensus 261 ~Nn-~~YD~fv~v~rcp~P~~D 281 (301)
T TIGR01684 261 DNN-FNYDYFVNVSRCPVPVND 281 (301)
T ss_pred ccC-ccceeEEEeeeCCCCchH
Confidence 532 345677777665443333
No 17
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=97.93 E-value=3.7e-06 Score=80.81 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=75.0
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEE
Q 013254 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 388 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~---g~yiKDLs~LgrdlskVI 388 (447)
+...||+.++|+++.+ .|.+.|-|++.+.++...++.+.-.. +|+..+..+.....+ ..|.+-+.++|.++++++
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l 170 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDA-HLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTL 170 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHH-HCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEE
Confidence 5678999999999995 59999999999999999999877554 788887765443222 245666788899999999
Q ss_pred EEECCchhhccCCCceee
Q 013254 389 IIDNSPQVFRLQVNNGIP 406 (447)
Q Consensus 389 IIDDsp~~~~~q~eNgIp 406 (447)
+|+|++.........|+.
T Consensus 171 ~igDs~~di~aA~~aG~~ 188 (224)
T PRK14988 171 FIDDSEPILDAAAQFGIR 188 (224)
T ss_pred EEcCCHHHHHHHHHcCCe
Confidence 999999877666677875
No 18
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=97.89 E-value=5.3e-05 Score=76.75 Aligned_cols=123 Identities=17% Similarity=0.213 Sum_probs=86.2
Q ss_pred CCCceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeC-chHHHHHHHhhc-ccEEEEEcCCchHHHHHHHH
Q 013254 271 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQR-PHLKTFLERVAE-MFEVVIFTASQSIYAAQLLD 348 (447)
Q Consensus 271 ~~kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lR-Pgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd 348 (447)
.+.+..+|+||||||+.... -|.+| |++.++|++|.+ .+.++|+|++.++++..+++
T Consensus 125 ~~~~~~i~~D~D~TL~~~~~---------------------~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le 183 (303)
T PHA03398 125 WEIPHVIVFDLDSTLITDEE---------------------PVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLK 183 (303)
T ss_pred eeeccEEEEecCCCccCCCC---------------------ccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHH
Confidence 35567999999999997632 26779 999999999996 59999999999999999999
Q ss_pred HHCCCCCeeeeEEEcccceee----------------CCceeeccc---cc--------------CCCC-CcEEEEECCc
Q 013254 349 ILDPDGKLISRRVYRESCIFS----------------DGTYTKDLT---VL--------------GVDL-AKVAIIDNSP 394 (447)
Q Consensus 349 ~LDP~~~lf~~rLyRe~C~~~----------------~g~yiKDLs---~L--------------grdl-skVIIIDDsp 394 (447)
.+...+ +|...+..++.... ...+..|.. .| |..- +-+-+|||-+
T Consensus 184 ~lgL~~-yFDvII~~g~i~~k~~~~~~~d~~~~~~~~~~~f~~d~~~~~~lPKSprvVl~yL~~~gvn~~KtiTLVDDl~ 262 (303)
T PHA03398 184 ETKLEG-YFDIIICGGRKAGEYSRRVIVDNKYKMVFVKKPFYLDVTDVKNLPKSPRVVLWYLRKKGVNYFKTITLVDDLK 262 (303)
T ss_pred HcCCCc-cccEEEECCCcccccccceeecccceeEEecCceeEeCCcccCCCCCCeehHHHHHHcCcceeccEEEeccCc
Confidence 998875 77666654443221 122333333 22 3333 3356788887
Q ss_pred hhhccCCCceeeeccccCCCCc
Q 013254 395 QVFRLQVNNGIPIESWFDDPSD 416 (447)
Q Consensus 395 ~~~~~q~eNgIpI~~~~gd~~D 416 (447)
.. -..-+|-+.++..-...+|
T Consensus 263 ~N-n~~YD~fv~v~rcp~P~~D 283 (303)
T PHA03398 263 SN-NYSYDYFVNVKRCPEPVND 283 (303)
T ss_pred cc-CccceeEEEeeeCCCCcHH
Confidence 54 3567777888776554444
No 19
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=97.82 E-value=4e-06 Score=78.92 Aligned_cols=94 Identities=14% Similarity=0.219 Sum_probs=67.6
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEccccee-------------eCCceeeccc
Q 013254 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIF-------------SDGTYTKDLT 378 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~-------------~~g~yiKDLs 378 (447)
+..+||+.+||+.+.+ .+.++|.|++...++..+++.+.-.. +|...+.-+...+ ....+.+-++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 162 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDA-AFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLR 162 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc-eEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHH
Confidence 5689999999999996 59999999999999999999987665 6655443211110 0112233345
Q ss_pred ccCCCCCcEEEEECCchhhccCCCceeee
Q 013254 379 VLGVDLAKVAIIDNSPQVFRLQVNNGIPI 407 (447)
Q Consensus 379 ~LgrdlskVIIIDDsp~~~~~q~eNgIpI 407 (447)
.++.++++++.|+|++.-.......|+.+
T Consensus 163 ~~~~~~~~~i~iGDs~~Di~aa~~ag~~i 191 (219)
T TIGR00338 163 KEGISPENTVAVGDGANDLSMIKAAGLGI 191 (219)
T ss_pred HcCCCHHHEEEEECCHHHHHHHHhCCCeE
Confidence 66888999999999987665544556665
No 20
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.75 E-value=3.3e-05 Score=71.34 Aligned_cols=115 Identities=15% Similarity=0.181 Sum_probs=74.9
Q ss_pred eEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCch-------------
Q 013254 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQS------------- 340 (447)
Q Consensus 275 ltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~-~YEIvIfTas~~------------- 340 (447)
+.|+||+||||+-.. .|. ...-.+.+-||+.++|++|.+ .|.++|.|++..
T Consensus 2 ~~~~~D~Dgtl~~~~-------~~~--------~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~ 66 (176)
T TIGR00213 2 KAIFLDRDGTINIDH-------GYV--------HEIDNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQ 66 (176)
T ss_pred CEEEEeCCCCEeCCC-------CCC--------CCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHH
Confidence 478999999998321 110 011124567999999999985 599999999985
Q ss_pred --HHHHHHHHHHCCCCCeeeeEEEcc-----------cceee---CCceeecccccCCCCCcEEEEECCchhhccCCCce
Q 013254 341 --IYAAQLLDILDPDGKLISRRVYRE-----------SCIFS---DGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNG 404 (447)
Q Consensus 341 --~YA~~ILd~LDP~~~lf~~rLyRe-----------~C~~~---~g~yiKDLs~LgrdlskVIIIDDsp~~~~~q~eNg 404 (447)
.|...++..+... |...++.. .|... .+.|.+-++++|.+++++++|+|++.-......+|
T Consensus 67 ~~~~~~~~l~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG 143 (176)
T TIGR00213 67 LTEWMDWSLAERDVD---LDGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAK 143 (176)
T ss_pred HHHHHHHHHHHcCCC---ccEEEECCCCCcccccccCCCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCC
Confidence 3444444443322 44444322 22211 23456667788999999999999998776666677
Q ss_pred eee
Q 013254 405 IPI 407 (447)
Q Consensus 405 IpI 407 (447)
+..
T Consensus 144 ~~~ 146 (176)
T TIGR00213 144 VKT 146 (176)
T ss_pred CcE
Confidence 654
No 21
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=97.74 E-value=2e-05 Score=70.79 Aligned_cols=116 Identities=20% Similarity=0.255 Sum_probs=75.6
Q ss_pred EEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCch--------------
Q 013254 276 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQS-------------- 340 (447)
Q Consensus 276 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls-~~YEIvIfTas~~-------------- 340 (447)
+|+||+||||+........ ...-.+...||+.++|++|. +.|.++|.|++.+
T Consensus 2 ~~~~d~dgtl~~~~~~~~~-------------~~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~ 68 (147)
T TIGR01656 2 ALFLDRDGVINEDTVSDYP-------------RSLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAP 68 (147)
T ss_pred eEEEeCCCceeccCCcccC-------------CCHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHH
Confidence 7899999999986432100 00112457899999999997 5699999999874
Q ss_pred -HHHHHHHHHHCCCCCeeeeEEEc-----cc--ce-eeCCceeecccccCCCCCcEEEEECCchhhccCCCceeee
Q 013254 341 -IYAAQLLDILDPDGKLISRRVYR-----ES--CI-FSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPI 407 (447)
Q Consensus 341 -~YA~~ILd~LDP~~~lf~~rLyR-----e~--C~-~~~g~yiKDLs~LgrdlskVIIIDDsp~~~~~q~eNgIpI 407 (447)
.++..+++.++.. +...++. +. +. .....|.+-+..+|.+++++++|.|++.-.......||..
T Consensus 69 ~~~~~~~l~~~~l~---~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~ 141 (147)
T TIGR01656 69 NGRVLELLRQLGVA---VDGVLFCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAA 141 (147)
T ss_pred HHHHHHHHHhCCCc---eeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCE
Confidence 5666777776543 2122221 11 11 1122345556677899999999999987665555555543
No 22
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.74 E-value=4.2e-05 Score=77.50 Aligned_cols=108 Identities=17% Similarity=0.121 Sum_probs=74.2
Q ss_pred ceEEEEecCcccccccccccCCCCceEEEEecceeeeE-EEeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHH--
Q 013254 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTV-YVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDI-- 349 (447)
Q Consensus 274 kltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~-~V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~-- 349 (447)
+++||+|||+||+.-..... ...++ +....|++.++|+.+. +.+.+.|.|......|..+++.
T Consensus 3 ~k~~v~DlDnTlw~gv~~e~-------------g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~ 69 (320)
T TIGR01686 3 LKVLVLDLDNTLWGGVLGED-------------GIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRK 69 (320)
T ss_pred eEEEEEcCCCCCCCCEEccC-------------CccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCc
Confidence 57999999999975432110 01111 1224789999999998 5699999999999999999998
Q ss_pred --HCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCchhh
Q 013254 350 --LDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVF 397 (447)
Q Consensus 350 --LDP~~~lf~~rLyRe~C~~~~g~yiKDLs~LgrdlskVIIIDDsp~~~ 397 (447)
+.... +|...... .......+.+-+..+|.+++.+|+|||++...
T Consensus 70 ~~~~~~~-~f~~~~~~--~~pk~~~i~~~~~~l~i~~~~~vfidD~~~d~ 116 (320)
T TIGR01686 70 DFILQAE-DFDARSIN--WGPKSESLRKIAKKLNLGTDSFLFIDDNPAER 116 (320)
T ss_pred cccCcHH-HeeEEEEe--cCchHHHHHHHHHHhCCCcCcEEEECCCHHHH
Confidence 55443 45443221 01112234455667899999999999999655
No 23
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.69 E-value=5.6e-05 Score=69.90 Aligned_cols=116 Identities=15% Similarity=0.108 Sum_probs=75.3
Q ss_pred ceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc-cEEEEEcCCch------------
Q 013254 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQS------------ 340 (447)
Q Consensus 274 kltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~-YEIvIfTas~~------------ 340 (447)
.+.|+||+||||+-.... | ..... .+...||+.++|++|++. |.++|.|++..
T Consensus 3 ~~~~~~d~~~t~~~~~~~------~------~~~~~--~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~ 68 (181)
T PRK08942 3 MKAIFLDRDGVINVDSDG------Y------VKSPD--EWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLN 68 (181)
T ss_pred ccEEEEECCCCcccCCcc------c------cCCHH--HeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHH
Confidence 358999999999654211 0 01111 245789999999999964 99999999863
Q ss_pred ---HHHHHHHHHHCCCCCeeeeEEEcccc-----eee---CCceeecccccCCCCCcEEEEECCchhhccCCCceee
Q 013254 341 ---IYAAQLLDILDPDGKLISRRVYRESC-----IFS---DGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIP 406 (447)
Q Consensus 341 ---~YA~~ILd~LDP~~~lf~~rLyRe~C-----~~~---~g~yiKDLs~LgrdlskVIIIDDsp~~~~~q~eNgIp 406 (447)
.+...+++.++ -+|...++...+ ... ...|.+-+..+|.+++++++|.|++.-.......|+.
T Consensus 69 ~~~~~~~~~l~~~g---~~f~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~ 142 (181)
T PRK08942 69 ALHEKMDWSLADRG---GRLDGIYYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVT 142 (181)
T ss_pred HHHHHHHHHHHHcC---CccceEEECCCCCCCCCcCCCCCHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCe
Confidence 33344454443 236665554322 111 1245666778899999999999999766555555554
No 24
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.68 E-value=7.7e-05 Score=68.85 Aligned_cols=123 Identities=16% Similarity=0.154 Sum_probs=84.7
Q ss_pred eEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCC---------------
Q 013254 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTAS--------------- 338 (447)
Q Consensus 275 ltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~-~YEIvIfTas--------------- 338 (447)
+.|+||.||||++.... .| . ....-.+..-||+.++|++|.+ .|.++|.|+.
T Consensus 2 ~~~~~d~dg~l~~~~~~-----~~--~-----~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~ 69 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPS-----DF--Q-----VDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDG 69 (161)
T ss_pred CEEEEeCCCCccccCCC-----cc--c-----cCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHH
Confidence 47899999999884211 00 0 0111136778999999999985 6999999996
Q ss_pred chHHHHHHHHHHCCCCCeeeeEEEc-----ccceeeC---CceeecccccCCCCCcEEEEECCchhhccCCCceeeeccc
Q 013254 339 QSIYAAQLLDILDPDGKLISRRVYR-----ESCIFSD---GTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESW 410 (447)
Q Consensus 339 ~~~YA~~ILd~LDP~~~lf~~rLyR-----e~C~~~~---g~yiKDLs~LgrdlskVIIIDDsp~~~~~q~eNgIpI~~~ 410 (447)
...++..+++.++.. |...++. +.+.... +.+..-++.++.+++++++|.|+..-......+|+..-.+
T Consensus 70 ~~~~~~~~l~~~gl~---fd~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~ 146 (161)
T TIGR01261 70 PHNLMLQIFRSQGII---FDDVLICPHFPDDNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQY 146 (161)
T ss_pred HHHHHHHHHHHCCCc---eeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEE
Confidence 356888888888774 6666653 4443322 2334445567889999999999987666666777776655
Q ss_pred cC
Q 013254 411 FD 412 (447)
Q Consensus 411 ~g 412 (447)
..
T Consensus 147 ~~ 148 (161)
T TIGR01261 147 DE 148 (161)
T ss_pred Ch
Confidence 43
No 25
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=97.67 E-value=0.00012 Score=68.59 Aligned_cols=114 Identities=16% Similarity=0.218 Sum_probs=62.9
Q ss_pred ceEEEEecCcccccccccccCCCCceEEEEecce------eeeEEEeeCchHHHHHHHhh-cccEEEEEcC-CchHHHHH
Q 013254 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMK------EHTVYVKQRPHLKTFLERVA-EMFEVVIFTA-SQSIYAAQ 345 (447)
Q Consensus 274 kltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~------~~~~~V~lRPgl~eFL~~ls-~~YEIvIfTa-s~~~YA~~ 345 (447)
++++|||||.||...-......+ |...... ..+.-|.+-|++.+.|+.+. ...+|.+.|. ..+++|.+
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~----Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~ 78 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGP----PFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARE 78 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-----EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHH
T ss_pred CcEEEEcCcCCCCchhHhhccCC----CceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHH
Confidence 45899999999977643322111 1111111 24556899999999999999 5699999995 56889999
Q ss_pred HHHHHCCC-----C----CeeeeEEEcccceeeCCce---eecc-cccCCCCCcEEEEECCchhh
Q 013254 346 LLDILDPD-----G----KLISRRVYRESCIFSDGTY---TKDL-TVLGVDLAKVAIIDNSPQVF 397 (447)
Q Consensus 346 ILd~LDP~-----~----~lf~~rLyRe~C~~~~g~y---iKDL-s~LgrdlskVIIIDDsp~~~ 397 (447)
+|+.|+.. + .+|.+.= ...|.- ++.| +..|.+.+.++++||.....
T Consensus 79 ~L~~l~i~~~~~~~~~~~~~F~~~e------I~~gsK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~ 137 (169)
T PF12689_consen 79 LLKLLEIDDADGDGVPLIEYFDYLE------IYPGSKTTHFRRIHRKTGIPYEEMLFFDDESRNI 137 (169)
T ss_dssp HHHHTT-C----------CCECEEE------ESSS-HHHHHHHHHHHH---GGGEEEEES-HHHH
T ss_pred HHHhcCCCccccccccchhhcchhh------eecCchHHHHHHHHHhcCCChhHEEEecCchhcc
Confidence 99999877 1 1343311 122322 2222 35689999999999998654
No 26
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.62 E-value=3.6e-05 Score=76.25 Aligned_cols=128 Identities=12% Similarity=0.087 Sum_probs=91.1
Q ss_pred CCceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHH
Q 013254 272 RKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDIL 350 (447)
Q Consensus 272 ~kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~L 350 (447)
.++..+++|+||||....... ..++. ........|++.++|+++.+ .+.++|.|+....+++.+++.|
T Consensus 156 ~~~~~~~~D~dgtl~~~~~~~--~~~~~---------~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l 224 (300)
T PHA02530 156 GLPKAVIFDIDGTLAKMGGRS--PYDWT---------KVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWL 224 (300)
T ss_pred CCCCEEEEECCCcCcCCCCCC--ccchh---------hcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHH
Confidence 345789999999998753211 11110 01124568999999999985 5999999999999999999999
Q ss_pred CCCCCeeeeEEEccc-------ceeeC---CceeecccccCC-CCCcEEEEECCchhhccCCCceeeeccc
Q 013254 351 DPDGKLISRRVYRES-------CIFSD---GTYTKDLTVLGV-DLAKVAIIDNSPQVFRLQVNNGIPIESW 410 (447)
Q Consensus 351 DP~~~lf~~rLyRe~-------C~~~~---g~yiKDLs~Lgr-dlskVIIIDDsp~~~~~q~eNgIpI~~~ 410 (447)
+..+.+|...+..+. +.... ..+.+.|..++. +.+.++.|||++........+||+.-..
T Consensus 225 ~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v 295 (300)
T PHA02530 225 RQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLECWQV 295 (300)
T ss_pred HHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeEEEe
Confidence 988767766655542 11111 123445566677 6789999999999888877888886544
No 27
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.35 E-value=0.00015 Score=63.82 Aligned_cols=94 Identities=18% Similarity=0.316 Sum_probs=76.0
Q ss_pred EEeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcE
Q 013254 312 YVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKV 387 (447)
Q Consensus 312 ~V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~---g~yiKDLs~LgrdlskV 387 (447)
.....||+.++|+.++ +.+.++|.|++...++..+++.+... .+|...++.++....+ ..|.+-++.+|.+++++
T Consensus 75 ~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~ 153 (176)
T PF13419_consen 75 KLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD-DYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEI 153 (176)
T ss_dssp GEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG-GGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGE
T ss_pred ccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc-cccccccccchhhhhhhHHHHHHHHHHHcCCCcceE
Confidence 5889999999999999 88999999999999999999999776 4788888876554332 24666677789999999
Q ss_pred EEEECCchhhccCCCceee
Q 013254 388 AIIDNSPQVFRLQVNNGIP 406 (447)
Q Consensus 388 IIIDDsp~~~~~q~eNgIp 406 (447)
++|||++.........|+.
T Consensus 154 ~~vgD~~~d~~~A~~~G~~ 172 (176)
T PF13419_consen 154 LFVGDSPSDVEAAKEAGIK 172 (176)
T ss_dssp EEEESSHHHHHHHHHTTSE
T ss_pred EEEeCCHHHHHHHHHcCCe
Confidence 9999999766544444443
No 28
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.32 E-value=0.00018 Score=70.75 Aligned_cols=130 Identities=12% Similarity=0.092 Sum_probs=76.7
Q ss_pred CCCceEEEEecCcccccccccc-c-----CCCCceEEEEecce-------eeeEEEeeCchHHHHHHHhhc-ccEEEEEc
Q 013254 271 GRKSVTLVLDLDETLVHSTLEY-C-----DDADFTFTVFFNMK-------EHTVYVKQRPHLKTFLERVAE-MFEVVIFT 336 (447)
Q Consensus 271 ~~kkltLVLDLDeTLVhSs~~~-~-----~~~df~~~i~~~~~-------~~~~~V~lRPgl~eFL~~ls~-~YEIvIfT 336 (447)
.++++.++|||||||++++..- . ...++.+ .++.. ...-.....|++.+||+++.+ .+.++|.|
T Consensus 60 ~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~--l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVT 137 (237)
T TIGR01672 60 GRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDY--LKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVT 137 (237)
T ss_pred CCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhh--hcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEe
Confidence 4556799999999999997421 1 1100110 00000 001123344559999999985 59999999
Q ss_pred CC----chHHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCchhhccCCCceeee
Q 013254 337 AS----QSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPI 407 (447)
Q Consensus 337 as----~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~g~yiKDLs~LgrdlskVIIIDDsp~~~~~q~eNgIpI 407 (447)
+. ...+++.+++.+.-.+ +|...+..+.... ..+-|. ..+ .....+|.|-|+..-+......||..
T Consensus 138 nr~~~k~~~~a~~ll~~lGi~~-~f~~i~~~d~~~~--~Kp~~~-~~l-~~~~i~i~vGDs~~DI~aAk~AGi~~ 207 (237)
T TIGR01672 138 GRTPGKTDTVSKTLAKNFHIPA-MNPVIFAGDKPGQ--YQYTKT-QWI-QDKNIRIHYGDSDNDITAAKEAGARG 207 (237)
T ss_pred CCCCCcCHHHHHHHHHHhCCch-heeEEECCCCCCC--CCCCHH-HHH-HhCCCeEEEeCCHHHHHHHHHCCCCE
Confidence 98 6779999999988765 6655444443221 111111 111 12233788999887665555566553
No 29
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.25 E-value=0.00099 Score=67.14 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=58.4
Q ss_pred CCceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEee-CchHHHHHHHhhccc-EEEEEcCCchHHHHHHHHH
Q 013254 272 RKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQ-RPHLKTFLERVAEMF-EVVIFTASQSIYAAQLLDI 349 (447)
Q Consensus 272 ~kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~l-RPgl~eFL~~ls~~Y-EIvIfTas~~~YA~~ILd~ 349 (447)
.++-++|+|||.|||-.... +.+ =|.+.+.|..+.+.+ -+++||.|.++++..-++.
T Consensus 120 ~~phVIVfDlD~TLItd~~~---------------------v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~ 178 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLITDEGD---------------------VRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKE 178 (297)
T ss_pred CCCcEEEEECCCcccccCCc---------------------cccCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHH
Confidence 44559999999999976422 222 388899999999765 8999999999999999999
Q ss_pred HCCCCCeeeeEEEccc
Q 013254 350 LDPDGKLISRRVYRES 365 (447)
Q Consensus 350 LDP~~~lf~~rLyRe~ 365 (447)
++-.+ +|...|.+..
T Consensus 179 ~~L~~-~Fd~ii~~G~ 193 (297)
T PF05152_consen 179 LKLEG-YFDIIICGGN 193 (297)
T ss_pred hCCcc-ccEEEEeCCc
Confidence 99875 8988887543
No 30
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=97.24 E-value=0.00052 Score=63.54 Aligned_cols=107 Identities=18% Similarity=0.267 Sum_probs=66.6
Q ss_pred ceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCchH-----------
Q 013254 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSI----------- 341 (447)
Q Consensus 274 kltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls-~~YEIvIfTas~~~----------- 341 (447)
+++++||+||||+-...... + ......| ..+-||+.+.|++|. +.|.++|.|++...
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~~----~------~~~~~~~-~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~ 81 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGKV----F------PTSASDW-RFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFK 81 (166)
T ss_pred CcEEEEeCCCceEecCCCCc----c------cCChHHe-EEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHH
Confidence 35789999999986431100 0 0001111 124599999999997 67999999998763
Q ss_pred -HHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccC--CCCCcEEEEECCc
Q 013254 342 -YAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLG--VDLAKVAIIDNSP 394 (447)
Q Consensus 342 -YA~~ILd~LDP~~~lf~~rLyRe~C~~~---~g~yiKDLs~Lg--rdlskVIIIDDsp 394 (447)
++..+++.++.. +...+..+..... .+.+..-+..+| .+++.++.|.|++
T Consensus 82 ~~i~~~l~~~gl~---~~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~ 137 (166)
T TIGR01664 82 NKIEAFLEKLKVP---IQVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAA 137 (166)
T ss_pred HHHHHHHHHcCCC---EEEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCC
Confidence 567777777753 2223332221111 123334456677 7899999999986
No 31
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=97.22 E-value=0.00016 Score=70.43 Aligned_cols=88 Identities=22% Similarity=0.320 Sum_probs=69.1
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEccc---------ceeeCCceeecccccCCC
Q 013254 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRES---------CIFSDGTYTKDLTVLGVD 383 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~---------C~~~~g~yiKDLs~Lgrd 383 (447)
++.-|-|++||-.|.+.+ .++||++.+..|..+|++|.... .|...++-+. |......|-|-....|.+
T Consensus 99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGieD-cFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi~ 176 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIED-CFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGID 176 (244)
T ss_pred cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChHH-hccceeEeeccCCCCCceeecCCHHHHHHHHHHhCCC
Confidence 666777999999999888 89999999999999999999886 7888777432 222334555666677877
Q ss_pred -CCcEEEEECCchhhccCCC
Q 013254 384 -LAKVAIIDNSPQVFRLQVN 402 (447)
Q Consensus 384 -lskVIIIDDsp~~~~~q~e 402 (447)
++|++++||+........+
T Consensus 177 ~p~~t~FfDDS~~NI~~ak~ 196 (244)
T KOG3109|consen 177 SPRNTYFFDDSERNIQTAKE 196 (244)
T ss_pred CcCceEEEcCchhhHHHHHh
Confidence 9999999999987754433
No 32
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.22 E-value=0.00048 Score=63.63 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=74.1
Q ss_pred CCceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc-cEEEEEcCCc-hHHHHHHHHH
Q 013254 272 RKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQ-SIYAAQLLDI 349 (447)
Q Consensus 272 ~kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~-YEIvIfTas~-~~YA~~ILd~ 349 (447)
.+-..||+|+||||..... ...-|++.++|++|.+. +.++|.|++. ...+..+++.
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~----------------------~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~ 80 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDH----------------------NEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKA 80 (170)
T ss_pred CCCCEEEEecCCccccCCC----------------------CCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHH
Confidence 3446899999999985411 23469999999999855 9999999999 6888888777
Q ss_pred HCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCch-hhccCCCceeeec
Q 013254 350 LDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQ-VFRLQVNNGIPIE 408 (447)
Q Consensus 350 LDP~~~lf~~rLyRe~C~~~~g~yiKDLs~LgrdlskVIIIDDsp~-~~~~q~eNgIpI~ 408 (447)
++... ++ .........|.+-+..+|.+.+++++|+|+.. -......+|+..-
T Consensus 81 ~gl~~------~~-~~~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~i 133 (170)
T TIGR01668 81 LGIPV------LP-HAVKPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYTI 133 (170)
T ss_pred cCCEE------Ec-CCCCCChHHHHHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCeEE
Confidence 65321 11 11111223455556778889999999999983 4444445555444
No 33
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.20 E-value=0.00031 Score=63.76 Aligned_cols=86 Identities=12% Similarity=0.194 Sum_probs=59.2
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeCC-----------------cee
Q 013254 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG-----------------TYT 374 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~g-----------------~yi 374 (447)
+.++||+.++|+++.+ .+.++|.|++...+++.+++.++-.. +|...+..+......| ...
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 149 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKD-VFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCC 149 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChh-heeEEeccCceECCCCcEEEecCCCCccCcCCCCCC
Confidence 6789999999999985 59999999999999999999987554 6766654322111011 112
Q ss_pred e--cccccCCC-CCcEEEEECCchhhcc
Q 013254 375 K--DLTVLGVD-LAKVAIIDNSPQVFRL 399 (447)
Q Consensus 375 K--DLs~Lgrd-lskVIIIDDsp~~~~~ 399 (447)
| -+..+... .+++|.|+|+..-...
T Consensus 150 K~~~~~~~~~~~~~~~i~iGD~~~D~~a 177 (188)
T TIGR01489 150 KGKVIHKLSEPKYQHIIYIGDGVTDVCP 177 (188)
T ss_pred HHHHHHHHHhhcCceEEEECCCcchhch
Confidence 2 22233333 6889999999876543
No 34
>PRK06769 hypothetical protein; Validated
Probab=97.15 E-value=0.00045 Score=64.00 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=71.0
Q ss_pred eEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCchHH-----HHHHHH
Q 013254 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIY-----AAQLLD 348 (447)
Q Consensus 275 ltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~-~YEIvIfTas~~~Y-----A~~ILd 348 (447)
..|+||+||||.- |.. + .+.-.+..-||+.++|++|.+ .|.++|.|++.... ...+..
T Consensus 5 ~~~~~d~d~~~~~--~~~-----~---------~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~ 68 (173)
T PRK06769 5 QAIFIDRDGTIGG--DTT-----I---------HYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQ 68 (173)
T ss_pred cEEEEeCCCcccC--CCC-----C---------CCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHH
Confidence 3789999999941 100 0 000124567999999999985 69999999986421 112333
Q ss_pred HHCCCCCeeeeEEE-c----ccceee---CCceeecccccCCCCCcEEEEECCchhhccCCCceeeec
Q 013254 349 ILDPDGKLISRRVY-R----ESCIFS---DGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIE 408 (447)
Q Consensus 349 ~LDP~~~lf~~rLy-R----e~C~~~---~g~yiKDLs~LgrdlskVIIIDDsp~~~~~q~eNgIpI~ 408 (447)
.+...| |...++ - +..... .+.|.+-++.+|.+++++++|+|++.-.......|+..-
T Consensus 69 ~l~~~g--~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i 134 (173)
T PRK06769 69 ELKGFG--FDDIYLCPHKHGDGCECRKPSTGMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNATTI 134 (173)
T ss_pred HHHhCC--cCEEEECcCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCeEE
Confidence 333333 333332 1 111111 235667778889999999999999976655555555544
No 35
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=97.13 E-value=9.5e-05 Score=68.77 Aligned_cols=94 Identities=18% Similarity=0.164 Sum_probs=61.5
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEc-ccceee-----CC-ceeecccccCCCCC
Q 013254 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYR-ESCIFS-----DG-TYTKDLTVLGVDLA 385 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyR-e~C~~~-----~g-~yiKDLs~Lgrdls 385 (447)
+..+||+.+||+.+.+.+.++|.|++...+++.+++.++-.. +|...+.- +.-... .+ ....-+..++....
T Consensus 67 ~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~~-~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~~ 145 (205)
T PRK13582 67 LDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWPT-LFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLGY 145 (205)
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCch-hhcceEEECCCCeEECccccccchHHHHHHHHHHhCC
Confidence 566899999999999779999999999999999999988654 56554432 111000 00 11111223344557
Q ss_pred cEEEEECCchhhccCCCceeee
Q 013254 386 KVAIIDNSPQVFRLQVNNGIPI 407 (447)
Q Consensus 386 kVIIIDDsp~~~~~q~eNgIpI 407 (447)
.++.|-|+..-.......|+.+
T Consensus 146 ~~v~iGDs~~D~~~~~aa~~~v 167 (205)
T PRK13582 146 RVIAAGDSYNDTTMLGEADAGI 167 (205)
T ss_pred eEEEEeCCHHHHHHHHhCCCCE
Confidence 8999999997654333344433
No 36
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=97.10 E-value=0.00041 Score=62.60 Aligned_cols=92 Identities=20% Similarity=0.254 Sum_probs=69.9
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEE
Q 013254 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 388 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~---g~yiKDLs~LgrdlskVI 388 (447)
+..+||+.+||+++.+ .|.++|.|++...+ ..++..++..+ +|...++.+.....+ ..|.+-+..+|.++++++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~-~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 161 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRD-LFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECL 161 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHH-HCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEE
Confidence 5678999999999985 69999999999999 76666676655 788888765543322 245566677899999999
Q ss_pred EEECCchhhccCCCceee
Q 013254 389 IIDNSPQVFRLQVNNGIP 406 (447)
Q Consensus 389 IIDDsp~~~~~q~eNgIp 406 (447)
+|+|++.........|+.
T Consensus 162 ~vgD~~~di~aA~~~G~~ 179 (183)
T TIGR01509 162 FVDDSPAGIEAAKAAGMH 179 (183)
T ss_pred EEcCCHHHHHHHHHcCCE
Confidence 999999766554455553
No 37
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.10 E-value=0.00041 Score=65.17 Aligned_cols=95 Identities=16% Similarity=0.221 Sum_probs=74.3
Q ss_pred EEeeCchHHHHHHHhhcc-cEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcE
Q 013254 312 YVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKV 387 (447)
Q Consensus 312 ~V~lRPgl~eFL~~ls~~-YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~---g~yiKDLs~LgrdlskV 387 (447)
++.+.||+.+||++|.+. +.++|.|++...++...++.++-.. +|..++..+...... ..|.+-++.+|.+.+++
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~ 170 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRD-FFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEA 170 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHH-hccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhE
Confidence 367899999999999865 9999999999999999999988765 788887766544322 24667778899999999
Q ss_pred EEEECCc-hhhccCCCceeee
Q 013254 388 AIIDNSP-QVFRLQVNNGIPI 407 (447)
Q Consensus 388 IIIDDsp-~~~~~q~eNgIpI 407 (447)
|.|.|++ .-.......|+..
T Consensus 171 ~~igDs~~~di~~A~~aG~~~ 191 (221)
T TIGR02253 171 VMVGDRLDKDIKGAKNLGMKT 191 (221)
T ss_pred EEECCChHHHHHHHHHCCCEE
Confidence 9999998 4444444455544
No 38
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.07 E-value=0.00094 Score=69.36 Aligned_cols=121 Identities=17% Similarity=0.189 Sum_probs=78.8
Q ss_pred CceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCC-------------
Q 013254 273 KSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTAS------------- 338 (447)
Q Consensus 273 kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~-~YEIvIfTas------------- 338 (447)
++++|+||-||||+........ ....-.+...||+.+||++|.+ .|.++|.|+.
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~y~------------~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l 68 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTDFQ------------VDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDF 68 (354)
T ss_pred CCcEEEEeCCCCccCCCCcccc------------ccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHH
Confidence 3679999999999986422100 1122347889999999999985 5999999995
Q ss_pred --chHHHHHHHHHHCCCCCeeeeEEEc-----ccceeeC---CceeecccccCCCCCcEEEEECCchhhccCCCceeeec
Q 013254 339 --QSIYAAQLLDILDPDGKLISRRVYR-----ESCIFSD---GTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIE 408 (447)
Q Consensus 339 --~~~YA~~ILd~LDP~~~lf~~rLyR-----e~C~~~~---g~yiKDLs~LgrdlskVIIIDDsp~~~~~q~eNgIpI~ 408 (447)
...++..+++.+.- +|...++. +.|.... +.+..-+..++.+++++++|-|+..-......+|+..-
T Consensus 69 ~~~~~~i~~iL~~~gl---~fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I 145 (354)
T PRK05446 69 DPPHNLMMQIFESQGI---KFDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGI 145 (354)
T ss_pred hhHHHHHHHHHHHcCC---ceeeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEE
Confidence 24455555565543 36555554 3433221 12222334567899999999999866655556666644
No 39
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=97.04 E-value=0.00032 Score=64.48 Aligned_cols=92 Identities=23% Similarity=0.285 Sum_probs=72.3
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEccccee-------eCCceeecccccCCCCC
Q 013254 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIF-------SDGTYTKDLTVLGVDLA 385 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~-------~~g~yiKDLs~Lgrdls 385 (447)
+...||+.++|++|. +.++|.|++...++..+++.++-.+ +|+..+..+.... ....|.+-+..+|.+++
T Consensus 83 ~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~~-~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~ 159 (184)
T TIGR01993 83 LKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIED-CFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPE 159 (184)
T ss_pred CCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcHh-hhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCcc
Confidence 446799999999998 6899999999999999999997654 8888777654332 22356666778899999
Q ss_pred cEEEEECCchhhccCCCceeee
Q 013254 386 KVAIIDNSPQVFRLQVNNGIPI 407 (447)
Q Consensus 386 kVIIIDDsp~~~~~q~eNgIpI 407 (447)
++++|+|++.........|+..
T Consensus 160 ~~l~vgD~~~di~aA~~~G~~~ 181 (184)
T TIGR01993 160 RAIFFDDSARNIAAAKALGMKT 181 (184)
T ss_pred ceEEEeCCHHHHHHHHHcCCEE
Confidence 9999999997665555566543
No 40
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.03 E-value=0.00062 Score=67.36 Aligned_cols=98 Identities=11% Similarity=0.180 Sum_probs=80.0
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEE
Q 013254 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 388 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~---g~yiKDLs~LgrdlskVI 388 (447)
+...||+.++|++|.+ .|.++|.|++...++..+++.++-.+ +|...+..+.+...+ ..|.+-+.++|.++++++
T Consensus 108 ~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l 186 (260)
T PLN03243 108 YRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEG-FFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCI 186 (260)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHh-hCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHeE
Confidence 5678999999999985 59999999999999999999998665 899888877654322 256777888999999999
Q ss_pred EEECCchhhccCCCceeeecccc
Q 013254 389 IIDNSPQVFRLQVNNGIPIESWF 411 (447)
Q Consensus 389 IIDDsp~~~~~q~eNgIpI~~~~ 411 (447)
+|+|+..-.......|+......
T Consensus 187 ~IgDs~~Di~aA~~aG~~~i~v~ 209 (260)
T PLN03243 187 VFGNSNSSVEAAHDGCMKCVAVA 209 (260)
T ss_pred EEcCCHHHHHHHHHcCCEEEEEe
Confidence 99999987766667777655443
No 41
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.03 E-value=0.00074 Score=65.75 Aligned_cols=97 Identities=16% Similarity=0.255 Sum_probs=79.6
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEE
Q 013254 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 388 (447)
Q Consensus 313 V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~---g~yiKDLs~LgrdlskVI 388 (447)
+...||+.++|++|. +.|.++|.|++.+.+++.+++.++-.. ||+..+..+.+...+ ..|.+-+..+|.++++++
T Consensus 107 ~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l 185 (248)
T PLN02770 107 LKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSD-FFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHTF 185 (248)
T ss_pred CCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChh-hCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHEE
Confidence 567899999999996 569999999999999999999998765 898888877654322 256777888999999999
Q ss_pred EEECCchhhccCCCceeeeccc
Q 013254 389 IIDNSPQVFRLQVNNGIPIESW 410 (447)
Q Consensus 389 IIDDsp~~~~~q~eNgIpI~~~ 410 (447)
+|.|++.-.......|++.-..
T Consensus 186 ~vgDs~~Di~aA~~aGi~~i~v 207 (248)
T PLN02770 186 VFEDSVSGIKAGVAAGMPVVGL 207 (248)
T ss_pred EEcCCHHHHHHHHHCCCEEEEE
Confidence 9999998776666777776543
No 42
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=96.99 E-value=0.0019 Score=63.58 Aligned_cols=130 Identities=10% Similarity=0.092 Sum_probs=74.8
Q ss_pred CCCceEEEEecCcccccccccc-cCCCCceEE--EEecc--------eeeeEEEeeCchHHHHHHHhh-cccEEEEEcC-
Q 013254 271 GRKSVTLVLDLDETLVHSTLEY-CDDADFTFT--VFFNM--------KEHTVYVKQRPHLKTFLERVA-EMFEVVIFTA- 337 (447)
Q Consensus 271 ~~kkltLVLDLDeTLVhSs~~~-~~~~df~~~--i~~~~--------~~~~~~V~lRPgl~eFL~~ls-~~YEIvIfTa- 337 (447)
.++++.++||+|||+++++... .....|.-. -++.. .....+....||+.+||+++. +.++|++-|+
T Consensus 60 ~~~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR 139 (237)
T PRK11009 60 GRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGR 139 (237)
T ss_pred CCCCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4557799999999999965211 111111000 00000 011234556666999999995 7799999999
Q ss_pred ---CchHHHHHHHHHHCC-CCCeeeeEEEcccceee-CCceeecccccCCCCCcEEEEECCchhhccCCCceeee
Q 013254 338 ---SQSIYAAQLLDILDP-DGKLISRRVYRESCIFS-DGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPI 407 (447)
Q Consensus 338 ---s~~~YA~~ILd~LDP-~~~lf~~rLyRe~C~~~-~g~yiKDLs~LgrdlskVIIIDDsp~~~~~q~eNgIpI 407 (447)
....+++.+++.+.- ...+|...+..+..... ....++ ...-+|+|-|+..-+......||..
T Consensus 140 ~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~~K~~K~~~l~-------~~~i~I~IGDs~~Di~aA~~AGi~~ 207 (237)
T PRK11009 140 TATKTETVSKTLADDFHIPADNMNPVIFAGDKPGQYTKTQWLK-------KKNIRIFYGDSDNDITAAREAGARG 207 (237)
T ss_pred CCcccHHHHHHHHHHcCCCcccceeEEEcCCCCCCCCHHHHHH-------hcCCeEEEcCCHHHHHHHHHcCCcE
Confidence 456789999987765 23366555544431000 001112 2233888999987665444555543
No 43
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=96.95 E-value=0.00067 Score=63.47 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=74.9
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeC---Cceeeccccc-CCCCCcEE
Q 013254 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVL-GVDLAKVA 388 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~---g~yiKDLs~L-grdlskVI 388 (447)
+..+||+.++|+++.+.+.++|-|++...++..+++.+.-.+ +|+..+..+.+.... ..|.+-++.+ |.+++++|
T Consensus 96 ~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~-~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v 174 (224)
T TIGR02254 96 HQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFP-FFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVL 174 (224)
T ss_pred CeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHh-hcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchheE
Confidence 578999999999999779999999999999999999987765 788888766654332 2466677888 99999999
Q ss_pred EEECCc-hhhccCCCceeee
Q 013254 389 IIDNSP-QVFRLQVNNGIPI 407 (447)
Q Consensus 389 IIDDsp-~~~~~q~eNgIpI 407 (447)
+|+|++ .-......+|++.
T Consensus 175 ~igD~~~~di~~A~~~G~~~ 194 (224)
T TIGR02254 175 MIGDSLTADIKGGQNAGLDT 194 (224)
T ss_pred EECCCcHHHHHHHHHCCCcE
Confidence 999997 4554444566544
No 44
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=96.94 E-value=0.001 Score=62.13 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=77.1
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCCCCCcEE
Q 013254 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 388 (447)
Q Consensus 313 V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~---~g~yiKDLs~LgrdlskVI 388 (447)
+...||+.++|+++. +.+.++|.|++...++..+++.++-.+ +|...+..+.+... ...|.+-+..+|.++++++
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l 152 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLP-LFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAV 152 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChh-heeeEEecCcCCCCCCChHHHHHHHHHcCCChhheE
Confidence 677899999999997 569999999999999999999998875 78877776654322 2245566677899999999
Q ss_pred EEECCchhhccCCCceeeecc
Q 013254 389 IIDNSPQVFRLQVNNGIPIES 409 (447)
Q Consensus 389 IIDDsp~~~~~q~eNgIpI~~ 409 (447)
+|+|++.-.......|++...
T Consensus 153 ~igD~~~Di~aA~~~Gi~~i~ 173 (205)
T TIGR01454 153 MVGDAVTDLASARAAGTATVA 173 (205)
T ss_pred EEcCCHHHHHHHHHcCCeEEE
Confidence 999999777666677877543
No 45
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=96.93 E-value=0.00072 Score=62.75 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=73.9
Q ss_pred EeeCchHHHHHHHhhcc-cEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCCCCCcEE
Q 013254 313 VKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 388 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~~-YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~---~g~yiKDLs~LgrdlskVI 388 (447)
+...||+.++|+++.+. |.++|.|++...++..+++.+.-.. +|...+..+..... ...|.+-++.+|.++++++
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~-~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~ 169 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDD-PFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVL 169 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChh-hhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEE
Confidence 55689999999999975 9999999999999999999987543 78888876654322 2245566678899999999
Q ss_pred EEECCchhhccCCCceeee
Q 013254 389 IIDNSPQVFRLQVNNGIPI 407 (447)
Q Consensus 389 IIDDsp~~~~~q~eNgIpI 407 (447)
+|+|++.-.......|+..
T Consensus 170 ~vgD~~~Di~~A~~~G~~~ 188 (198)
T TIGR01428 170 FVASNPWDLGGAKKFGFKT 188 (198)
T ss_pred EEeCCHHHHHHHHHCCCcE
Confidence 9999996665555566553
No 46
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=96.91 E-value=0.00082 Score=63.26 Aligned_cols=95 Identities=13% Similarity=0.124 Sum_probs=77.5
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCCCCCcEE
Q 013254 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 388 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~---~g~yiKDLs~LgrdlskVI 388 (447)
+...||+.++|+++.+ .+.++|.|++.+.++..+++.++-.. +|+..+..+.+... ...|.+-+..+|.++++++
T Consensus 81 ~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~-~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~ 159 (214)
T PRK13288 81 VTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDE-FFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEAL 159 (214)
T ss_pred cccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-ceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEE
Confidence 5678999999999984 69999999999999999999998765 88888876665432 2345666778888999999
Q ss_pred EEECCchhhccCCCceeeec
Q 013254 389 IIDNSPQVFRLQVNNGIPIE 408 (447)
Q Consensus 389 IIDDsp~~~~~q~eNgIpI~ 408 (447)
+|+|++.-.......|++.-
T Consensus 160 ~iGDs~~Di~aa~~aG~~~i 179 (214)
T PRK13288 160 MVGDNHHDILAGKNAGTKTA 179 (214)
T ss_pred EECCCHHHHHHHHHCCCeEE
Confidence 99999987766667777654
No 47
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=96.88 E-value=0.00084 Score=62.57 Aligned_cols=97 Identities=15% Similarity=0.128 Sum_probs=75.7
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEE
Q 013254 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 388 (447)
Q Consensus 313 V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~---g~yiKDLs~LgrdlskVI 388 (447)
+..+||+.++|+++. +.+.++|.|++...+++.+++.++-.+ +|...+..+.....+ ..|.+-++.+|.++++++
T Consensus 84 ~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~ 162 (213)
T TIGR01449 84 TSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAK-YFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMV 162 (213)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHh-hCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeE
Confidence 578999999999998 459999999999999999999988765 787666655432221 245666788899999999
Q ss_pred EEECCchhhccCCCceeeeccc
Q 013254 389 IIDNSPQVFRLQVNNGIPIESW 410 (447)
Q Consensus 389 IIDDsp~~~~~q~eNgIpI~~~ 410 (447)
+|+|++.-+......|++....
T Consensus 163 ~igDs~~d~~aa~~aG~~~i~v 184 (213)
T TIGR01449 163 YVGDSRVDIQAARAAGCPSVLL 184 (213)
T ss_pred EeCCCHHHHHHHHHCCCeEEEE
Confidence 9999998776655667665543
No 48
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=96.78 E-value=0.0035 Score=56.14 Aligned_cols=84 Identities=24% Similarity=0.247 Sum_probs=58.2
Q ss_pred eEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHh-hcccEEEEEcCCchHHHH---------
Q 013254 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERV-AEMFEVVIFTASQSIYAA--------- 344 (447)
Q Consensus 275 ltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~l-s~~YEIvIfTas~~~YA~--------- 344 (447)
+.+++||||||+..... .|. .....|.+.+.|+++ .+.++|+++|+-......
T Consensus 2 K~i~~DiDGTL~~~~~~-----~y~------------~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~ 64 (126)
T TIGR01689 2 KRLVMDLDNTITLTENG-----DYA------------NVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIH 64 (126)
T ss_pred CEEEEeCCCCcccCCCC-----ccc------------ccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchh
Confidence 37899999999754211 010 134678899999998 478999999999888876
Q ss_pred ---HHHHHHCCCCCeeeeEEEcc-cceeeCCceeec
Q 013254 345 ---QLLDILDPDGKLISRRVYRE-SCIFSDGTYTKD 376 (447)
Q Consensus 345 ---~ILd~LDP~~~lf~~rLyRe-~C~~~~g~yiKD 376 (447)
.+++.|+..+-.+...+.|. .|. ..|.|+.|
T Consensus 65 ~~~~t~~wL~k~~ipYd~l~~~kp~~~-~~~~~~dD 99 (126)
T TIGR01689 65 TLPIIILWLNQHNVPYDEIYVGKPWCG-HDGFYVDD 99 (126)
T ss_pred hHHHHHHHHHHcCCCCceEEeCCCcCC-CCCceecc
Confidence 77888888776666666654 453 23455443
No 49
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=96.70 E-value=0.00091 Score=63.94 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=43.0
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEE
Q 013254 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVY 362 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLy 362 (447)
+.++||+.+||+++.+.+.++|-|++...+++++++.++-.. +|..++-
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~~-~~an~l~ 115 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPT-LLCHKLE 115 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCch-hhceeeE
Confidence 578999999999999888999999999999999999998764 6665554
No 50
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=96.69 E-value=0.0016 Score=61.65 Aligned_cols=100 Identities=14% Similarity=0.081 Sum_probs=79.7
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEE
Q 013254 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 388 (447)
Q Consensus 313 V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~---g~yiKDLs~LgrdlskVI 388 (447)
..+.||+.++|+++. +.|.++|.|++...+++.+++.+.-.+ +|+..+.++.....+ ..|..-++.+|.++++++
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~ 169 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRD-YFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLTCV 169 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchh-cccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHeE
Confidence 467899999999998 569999999999999999999988665 788877766543222 245666778899999999
Q ss_pred EEECCchhhccCCCceeeeccccCC
Q 013254 389 IIDNSPQVFRLQVNNGIPIESWFDD 413 (447)
Q Consensus 389 IIDDsp~~~~~q~eNgIpI~~~~gd 413 (447)
.|+|++.-.......|++.--+...
T Consensus 170 ~igDs~~Di~aA~~aG~~~i~v~~~ 194 (222)
T PRK10826 170 ALEDSFNGMIAAKAARMRSIVVPAP 194 (222)
T ss_pred EEcCChhhHHHHHHcCCEEEEecCC
Confidence 9999998887777778776555443
No 51
>PRK09449 dUMP phosphatase; Provisional
Probab=96.69 E-value=0.0014 Score=61.87 Aligned_cols=93 Identities=15% Similarity=0.153 Sum_probs=72.1
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCC-CCCcEE
Q 013254 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGV-DLAKVA 388 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~---g~yiKDLs~Lgr-dlskVI 388 (447)
+...||+.++|++|.+.|.+.|.|++...+++.+++.+...+ +|...+..+++...+ ..|.+-++.+|. +.+.++
T Consensus 94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~ 172 (224)
T PRK09449 94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLRD-YFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRVL 172 (224)
T ss_pred CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChHH-HcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccEE
Confidence 567899999999999889999999999999999999987765 788888876654332 346677788885 457899
Q ss_pred EEECCch-hhccCCCceee
Q 013254 389 IIDNSPQ-VFRLQVNNGIP 406 (447)
Q Consensus 389 IIDDsp~-~~~~q~eNgIp 406 (447)
+|+|++. -.......|+.
T Consensus 173 ~vgD~~~~Di~~A~~aG~~ 191 (224)
T PRK09449 173 MVGDNLHSDILGGINAGID 191 (224)
T ss_pred EEcCCcHHHHHHHHHCCCc
Confidence 9999973 45444445543
No 52
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=96.69 E-value=0.0017 Score=59.11 Aligned_cols=112 Identities=19% Similarity=0.157 Sum_probs=73.0
Q ss_pred eEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCC
Q 013254 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPD 353 (447)
Q Consensus 275 ltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~ 353 (447)
+.++||+||||+.-.... ..+ ....-++.++|+. -|++|.+ .+.++|.|+.....+..+++.+...
T Consensus 2 ~~~~~D~Dgtl~~~~~~~----------~~~-~~~~~~~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~ 68 (154)
T TIGR01670 2 RLLILDVDGVLTDGKIYY----------TNN-GEEIKAFNVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLGIT 68 (154)
T ss_pred eEEEEeCceeEEcCeEEE----------CCC-CcEEEEEechhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCC
Confidence 478999999999532110 011 1122234677776 6888874 6999999999999999999998765
Q ss_pred CCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCchhhccCCCceee
Q 013254 354 GKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIP 406 (447)
Q Consensus 354 ~~lf~~rLyRe~C~~~~g~yiKDLs~LgrdlskVIIIDDsp~~~~~q~eNgIp 406 (447)
. +|... ......+.+-+..+|.++++++.|-|+..-...-...|+.
T Consensus 69 ~-~~~~~------~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~~ 114 (154)
T TIGR01670 69 H-LYQGQ------SNKLIAFSDILEKLALAPENVAYIGDDLIDWPVMEKVGLS 114 (154)
T ss_pred E-EEecc------cchHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCe
Confidence 3 44321 1111123333456788899999999998766544444444
No 53
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=96.66 E-value=0.0013 Score=61.53 Aligned_cols=100 Identities=14% Similarity=0.148 Sum_probs=75.0
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEE
Q 013254 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 388 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~---g~yiKDLs~LgrdlskVI 388 (447)
...+||+.++|+++.+ .|.++|.|++....+..++.....-..+|...++.+.+...+ ..|..-++.+|.++++++
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l 162 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAV 162 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeE
Confidence 4579999999999984 699999999998877665543221234788777766655432 246677788999999999
Q ss_pred EEECCchhhccCCCceeeeccccC
Q 013254 389 IIDNSPQVFRLQVNNGIPIESWFD 412 (447)
Q Consensus 389 IIDDsp~~~~~q~eNgIpI~~~~g 412 (447)
+|||++.........|+...-+.+
T Consensus 163 ~vgD~~~di~aA~~aG~~~i~~~~ 186 (199)
T PRK09456 163 FFDDNADNIEAANALGITSILVTD 186 (199)
T ss_pred EeCCCHHHHHHHHHcCCEEEEecC
Confidence 999999877666678887765544
No 54
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=96.65 E-value=0.0012 Score=63.08 Aligned_cols=94 Identities=17% Similarity=0.153 Sum_probs=71.7
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEE
Q 013254 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 388 (447)
Q Consensus 313 V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~---g~yiKDLs~LgrdlskVI 388 (447)
...-||+.+.|..++ +.|.+.|.|+.....++.+++.++-.. +|..++..+.....+ ..+..-+..+|.+++++|
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~-~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l 166 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD-YFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEAL 166 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc-ccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheE
Confidence 467899999999999 568999999999999999999998876 787776633322222 123455567788877999
Q ss_pred EEECCchhhccCCCceeee
Q 013254 389 IIDNSPQVFRLQVNNGIPI 407 (447)
Q Consensus 389 IIDDsp~~~~~q~eNgIpI 407 (447)
.|=|+..-.......|++.
T Consensus 167 ~VGDs~~Di~aA~~Ag~~~ 185 (220)
T COG0546 167 MVGDSLNDILAAKAAGVPA 185 (220)
T ss_pred EECCCHHHHHHHHHcCCCE
Confidence 9999998776665666553
No 55
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=96.57 E-value=0.0014 Score=60.00 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=74.4
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeecccccCCCCCcEEE
Q 013254 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKVAI 389 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~g---~yiKDLs~LgrdlskVII 389 (447)
+..-|++ ++|+++.+.+.++|-|++.+.+++.+++.+.-.+ ||+..+..+++...+. .|..-+.++|.+++.+|+
T Consensus 87 ~~~~~~~-e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~-~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~ 164 (188)
T PRK10725 87 VEPLPLI-EVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRR-YFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVV 164 (188)
T ss_pred CCCccHH-HHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHh-HceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 3455764 8899998779999999999999999999998765 8998888776543322 456667788999999999
Q ss_pred EECCchhhccCCCceeeec
Q 013254 390 IDNSPQVFRLQVNNGIPIE 408 (447)
Q Consensus 390 IDDsp~~~~~q~eNgIpI~ 408 (447)
|+|++.-+......|++.-
T Consensus 165 igDs~~di~aA~~aG~~~i 183 (188)
T PRK10725 165 FEDADFGIQAARAAGMDAV 183 (188)
T ss_pred EeccHhhHHHHHHCCCEEE
Confidence 9999987776666776653
No 56
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=96.57 E-value=0.0013 Score=59.86 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=70.8
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEE
Q 013254 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 388 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~---g~yiKDLs~LgrdlskVI 388 (447)
+...||+.++|+++.+ .+.++|.|++ .+++.+++.++-.+ +|..++..+...... ..|.+-+..+|..++++|
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~-~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v 163 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTD-YFDAIVDADEVKEGKPHPETFLLAAELLGVSPNECV 163 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHH-HCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 5789999999999985 5899999988 78999999877654 788877765543221 235556677888999999
Q ss_pred EEECCchhhccCCCceeee
Q 013254 389 IIDNSPQVFRLQVNNGIPI 407 (447)
Q Consensus 389 IIDDsp~~~~~q~eNgIpI 407 (447)
+|+|++.-......+|++.
T Consensus 164 ~IgD~~~di~aA~~~G~~~ 182 (185)
T TIGR02009 164 VFEDALAGVQAARAAGMFA 182 (185)
T ss_pred EEeCcHhhHHHHHHCCCeE
Confidence 9999998776666667653
No 57
>PLN02954 phosphoserine phosphatase
Probab=96.54 E-value=0.00084 Score=63.40 Aligned_cols=92 Identities=9% Similarity=0.123 Sum_probs=59.9
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCCC-CeeeeEEEccc-------------ceee-CCcee-e
Q 013254 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDG-KLISRRVYRES-------------CIFS-DGTYT-K 375 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~~-~lf~~rLyRe~-------------C~~~-~g~yi-K 375 (447)
..++||+.++|+++.+ .+.++|.|++.+.+++.+++.++-.. .+|...+.-+. |... +...+ +
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~ 162 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQH 162 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHH
Confidence 4578999999999975 58999999999999999999987642 36654433111 1000 00011 1
Q ss_pred cccccCCCCCcEEEEECCchhhccCCCceee
Q 013254 376 DLTVLGVDLAKVAIIDNSPQVFRLQVNNGIP 406 (447)
Q Consensus 376 DLs~LgrdlskVIIIDDsp~~~~~q~eNgIp 406 (447)
-+..+| .+++|.|-|+..-......+|+.
T Consensus 163 ~~~~~~--~~~~i~iGDs~~Di~aa~~~~~~ 191 (224)
T PLN02954 163 IKKKHG--YKTMVMIGDGATDLEARKPGGAD 191 (224)
T ss_pred HHHHcC--CCceEEEeCCHHHHHhhhcCCCC
Confidence 112233 36899999999877654444444
No 58
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=96.48 E-value=0.0033 Score=65.93 Aligned_cols=97 Identities=10% Similarity=0.097 Sum_probs=79.2
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEE
Q 013254 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 388 (447)
Q Consensus 313 V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~---g~yiKDLs~LgrdlskVI 388 (447)
+...||+.+||++|. +.+.+.|.|++.+.+++.+++.++-.+ ||+..+..+++.... ..|.+-+..+|.+++++|
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~-yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl 293 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRG-FFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCI 293 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHH-HceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccEE
Confidence 456899999999997 459999999999999999999998765 899888887764332 256777888999999999
Q ss_pred EEECCchhhccCCCceeeeccc
Q 013254 389 IIDNSPQVFRLQVNNGIPIESW 410 (447)
Q Consensus 389 IIDDsp~~~~~q~eNgIpI~~~ 410 (447)
+|+|++.-.......|+.....
T Consensus 294 ~IGDS~~DIeAAk~AGm~~IgV 315 (381)
T PLN02575 294 VFGNSNQTVEAAHDARMKCVAV 315 (381)
T ss_pred EEcCCHHHHHHHHHcCCEEEEE
Confidence 9999998776666666655444
No 59
>PRK11587 putative phosphatase; Provisional
Probab=96.44 E-value=0.0047 Score=58.54 Aligned_cols=97 Identities=12% Similarity=0.080 Sum_probs=73.7
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCCCCCcEE
Q 013254 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 388 (447)
Q Consensus 313 V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~---~g~yiKDLs~LgrdlskVI 388 (447)
+...||+.+||++|. +.+.++|.|++...++..+++...-. +|...+..++.... ...|.+-+..+|..++++|
T Consensus 82 ~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~--~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l 159 (218)
T PRK11587 82 ITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLP--APEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECV 159 (218)
T ss_pred ceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCC--CccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEE
Confidence 567999999999997 56999999999999888888776642 45555555554322 2356777788999999999
Q ss_pred EEECCchhhccCCCceeeecccc
Q 013254 389 IIDNSPQVFRLQVNNGIPIESWF 411 (447)
Q Consensus 389 IIDDsp~~~~~q~eNgIpI~~~~ 411 (447)
+|+|++.-.......|+..-.+.
T Consensus 160 ~igDs~~di~aA~~aG~~~i~v~ 182 (218)
T PRK11587 160 VVEDAPAGVLSGLAAGCHVIAVN 182 (218)
T ss_pred EEecchhhhHHHHHCCCEEEEEC
Confidence 99999987766666777654443
No 60
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=96.41 E-value=0.005 Score=61.44 Aligned_cols=95 Identities=11% Similarity=0.078 Sum_probs=70.2
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEE
Q 013254 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIID 391 (447)
Q Consensus 313 V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~g~yiKDLs~LgrdlskVIIID 391 (447)
+...||+.++|++|. +.+.+.|.|++...++..+++.++-.. +|...+..+........+.+-+..++.+++++++|+
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~-~F~~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~IG 219 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRS-LFSVVQAGTPILSKRRALSQLVAREGWQPAAVMYVG 219 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-heEEEEecCCCCCCHHHHHHHHHHhCcChhHEEEEC
Confidence 456799999999998 558999999999999999999998765 787665543321111223344456688889999999
Q ss_pred CCchhhccCCCceeeec
Q 013254 392 NSPQVFRLQVNNGIPIE 408 (447)
Q Consensus 392 Dsp~~~~~q~eNgIpI~ 408 (447)
|++.-.......|+...
T Consensus 220 Ds~~Di~aA~~AG~~~I 236 (273)
T PRK13225 220 DETRDVEAARQVGLIAV 236 (273)
T ss_pred CCHHHHHHHHHCCCeEE
Confidence 99976655555666653
No 61
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=96.36 E-value=0.0035 Score=60.66 Aligned_cols=98 Identities=12% Similarity=0.014 Sum_probs=76.3
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCC-CCCcE
Q 013254 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGV-DLAKV 387 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~---~g~yiKDLs~Lgr-dlskV 387 (447)
+...||+.++|++|.+ .+.+.|-|++...+++.+++.+.-.+-+|...+..+..... ...|.+-+..+|. +++++
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~ 177 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAAC 177 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchhe
Confidence 5678999999999985 59999999999999999999988776324666666654322 1256677788887 48999
Q ss_pred EEEECCchhhccCCCceeeeccc
Q 013254 388 AIIDNSPQVFRLQVNNGIPIESW 410 (447)
Q Consensus 388 IIIDDsp~~~~~q~eNgIpI~~~ 410 (447)
|+|.|++.-.......|+.....
T Consensus 178 l~IGDs~~Di~aA~~aGi~~i~v 200 (253)
T TIGR01422 178 VKVGDTVPDIEEGRNAGMWTVGL 200 (253)
T ss_pred EEECCcHHHHHHHHHCCCeEEEE
Confidence 99999998776666777766554
No 62
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.35 E-value=0.0055 Score=66.83 Aligned_cols=108 Identities=12% Similarity=0.161 Sum_probs=69.7
Q ss_pred CceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCch-----------
Q 013254 273 KSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQS----------- 340 (447)
Q Consensus 273 kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~-~YEIvIfTas~~----------- 340 (447)
+.+++.||+||||+...... .| ......| ..+-||+.+.|++|.+ .|.|+|+|+...
T Consensus 167 ~~Kia~fD~DGTLi~t~sg~----~~------~~~~~d~-~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~ 235 (526)
T TIGR01663 167 QEKIAGFDLDGTIIKTKSGK----VF------PKGPDDW-QIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDF 235 (526)
T ss_pred cCcEEEEECCCCccccCCCc----cC------CCCHHHe-eecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHH
Confidence 34699999999999753110 00 0011112 2245999999999984 699999999766
Q ss_pred -HHHHHHHHHHCCCCCeeeeEEEcccceeeC---Ccee---eccc-ccCCCCCcEEEEECCc
Q 013254 341 -IYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYT---KDLT-VLGVDLAKVAIIDNSP 394 (447)
Q Consensus 341 -~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~---g~yi---KDLs-~LgrdlskVIIIDDsp 394 (447)
.++..+++.|+- .|...+..+.|.+.. |.+. +++. .++.+++++++|-|+.
T Consensus 236 ~~ki~~iL~~lgi---pfdviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaa 294 (526)
T TIGR01663 236 KAKIEAIVAKLGV---PFQVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAA 294 (526)
T ss_pred HHHHHHHHHHcCC---ceEEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcc
Confidence 467888888864 366444444444332 2332 2232 2357899999999997
No 63
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=96.28 E-value=0.0043 Score=59.54 Aligned_cols=96 Identities=11% Similarity=0.016 Sum_probs=74.4
Q ss_pred EEeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCCCCCcE
Q 013254 312 YVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKV 387 (447)
Q Consensus 312 ~V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~---~g~yiKDLs~LgrdlskV 387 (447)
++...||+.++|++|.+ .+.+.|.|++...++..+++.++-.+ +|...+..+.+... ...|.+-++.+|.+++++
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~ 171 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQ-RCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDC 171 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchh-cccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhE
Confidence 36789999999999985 58999999999999999999987654 67766665554322 124667778889999999
Q ss_pred EEEECCchhhccCCCceeeec
Q 013254 388 AIIDNSPQVFRLQVNNGIPIE 408 (447)
Q Consensus 388 IIIDDsp~~~~~q~eNgIpI~ 408 (447)
++|+|++.-.......|+...
T Consensus 172 l~IGDs~~Di~aA~~aG~~~i 192 (229)
T PRK13226 172 VYVGDDERDILAARAAGMPSV 192 (229)
T ss_pred EEeCCCHHHHHHHHHCCCcEE
Confidence 999999977655555666543
No 64
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=96.17 E-value=0.0053 Score=57.61 Aligned_cols=93 Identities=17% Similarity=0.219 Sum_probs=70.5
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEE
Q 013254 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 388 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~---g~yiKDLs~LgrdlskVI 388 (447)
...+||+.+||+++.+ .+.++|.|++...++..+++.++-.. +|...+..+.+.... ..|.+-+..++.+.++++
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i 170 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIAD-YFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEML 170 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCcc-CccEEEcCCCCCCCCcChHHHHHHHHHcCCChhheE
Confidence 6689999999999985 69999999999999999999987654 676655544432111 234556677888999999
Q ss_pred EEECCchhhccCCCceee
Q 013254 389 IIDNSPQVFRLQVNNGIP 406 (447)
Q Consensus 389 IIDDsp~~~~~q~eNgIp 406 (447)
+|+|++.-.......|++
T Consensus 171 ~igD~~~Di~~a~~~g~~ 188 (226)
T PRK13222 171 FVGDSRNDIQAARAAGCP 188 (226)
T ss_pred EECCCHHHHHHHHHCCCc
Confidence 999998766555555553
No 65
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=96.13 E-value=0.009 Score=54.91 Aligned_cols=94 Identities=14% Similarity=0.159 Sum_probs=65.8
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEccccee-eCCce------------eeccc
Q 013254 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIF-SDGTY------------TKDLT 378 (447)
Q Consensus 313 V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~-~~g~y------------iKDLs 378 (447)
+..+||+.++|+++. +.+.++|.|++...+++.+++.+.... +|...+..+.... ....+ .+-+.
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~-~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~ 157 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDY-VYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKR 157 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCe-EEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHH
Confidence 678999999999998 569999999999999999999998654 6665554322111 11111 11133
Q ss_pred ccCCCCCcEEEEECCchhhccCCCceeee
Q 013254 379 VLGVDLAKVAIIDNSPQVFRLQVNNGIPI 407 (447)
Q Consensus 379 ~LgrdlskVIIIDDsp~~~~~q~eNgIpI 407 (447)
.+|.++++++.|.|+..-...-...|+++
T Consensus 158 ~~~~~~~~~i~iGDs~~D~~~a~~ag~~~ 186 (201)
T TIGR01491 158 ELNPSLTETVAVGDSKNDLPMFEVADISI 186 (201)
T ss_pred HhCCCHHHEEEEcCCHhHHHHHHhcCCeE
Confidence 46778899999999986554444455544
No 66
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=96.10 E-value=0.0095 Score=57.73 Aligned_cols=93 Identities=11% Similarity=0.095 Sum_probs=61.9
Q ss_pred eEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCchHHHH--HHHHHHC
Q 013254 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAA--QLLDILD 351 (447)
Q Consensus 275 ltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~--~ILd~LD 351 (447)
..+++|+||||++.. ..-||+.++|++|. +.+.++|.|++.+..++ +.++.++
T Consensus 9 ~~~~~D~dG~l~~~~------------------------~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~g 64 (242)
T TIGR01459 9 DVFLLDLWGVIIDGN------------------------HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLG 64 (242)
T ss_pred CEEEEecccccccCC------------------------ccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCC
Confidence 478999999997642 23699999999998 56999999999988777 7778887
Q ss_pred CCCCeeeeEEEcccceeeCCcee-ecccccCCCCCcEEEEECCc
Q 013254 352 PDGKLISRRVYRESCIFSDGTYT-KDLTVLGVDLAKVAIIDNSP 394 (447)
Q Consensus 352 P~~~lf~~rLyRe~C~~~~g~yi-KDLs~LgrdlskVIIIDDsp 394 (447)
....+|...+....... .++ .-+..+|....++++|-|..
T Consensus 65 l~~~~~~~Ii~s~~~~~---~~l~~~~~~~~~~~~~~~~vGd~~ 105 (242)
T TIGR01459 65 INADLPEMIISSGEIAV---QMILESKKRFDIRNGIIYLLGHLE 105 (242)
T ss_pred CCccccceEEccHHHHH---HHHHhhhhhccCCCceEEEeCCcc
Confidence 65325666666443211 111 11223344445566665544
No 67
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=96.08 E-value=0.0041 Score=59.87 Aligned_cols=99 Identities=17% Similarity=0.209 Sum_probs=83.1
Q ss_pred EeeCchHHHHHHHhhcc-cEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCCCCCcEE
Q 013254 313 VKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 388 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~~-YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~---~g~yiKDLs~LgrdlskVI 388 (447)
+...||+.+||+.|.+. .-+.+-|++.+..+..++..+.-.+ +|..++++++.... +..|.+-+.+||.+++++|
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~-~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~Cv 163 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLD-YFDVIVTADDVARGKPAPDIYLLAAERLGVDPEECV 163 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChh-hcchhccHHHHhcCCCCCHHHHHHHHHcCCChHHeE
Confidence 68899999999999977 9999999999999999999998876 89999998776544 2368888999999999999
Q ss_pred EEECCchhhccCCCceeeeccccC
Q 013254 389 IIDNSPQVFRLQVNNGIPIESWFD 412 (447)
Q Consensus 389 IIDDsp~~~~~q~eNgIpI~~~~g 412 (447)
+|+|++.-......-|+.+-.+.+
T Consensus 164 viEDs~~Gi~Aa~aAGm~vv~v~~ 187 (221)
T COG0637 164 VVEDSPAGIQAAKAAGMRVVGVPA 187 (221)
T ss_pred EEecchhHHHHHHHCCCEEEEecC
Confidence 999999766555555666666554
No 68
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=96.02 E-value=0.0062 Score=60.38 Aligned_cols=94 Identities=13% Similarity=0.139 Sum_probs=72.1
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEE
Q 013254 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 388 (447)
Q Consensus 313 V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~---g~yiKDLs~LgrdlskVI 388 (447)
+..+||+.++|+++. +.+.++|.|++...++..+++.++-.+ +|...+..+.+.... ..|.+-+..+|.+++++|
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~-~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l 178 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGR-YFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSL 178 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHh-hCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEE
Confidence 457899999999997 569999999999999999999987654 787766655433211 134455667899999999
Q ss_pred EEECCchhhccCCCceeee
Q 013254 389 IIDNSPQVFRLQVNNGIPI 407 (447)
Q Consensus 389 IIDDsp~~~~~q~eNgIpI 407 (447)
+|+|++.-......+|+..
T Consensus 179 ~IGD~~~Di~aA~~aGi~~ 197 (272)
T PRK13223 179 FVGDSRSDVLAAKAAGVQC 197 (272)
T ss_pred EECCCHHHHHHHHHCCCeE
Confidence 9999998776656677653
No 69
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=95.94 E-value=0.01 Score=55.70 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=71.6
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEEE
Q 013254 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVAI 389 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~---g~yiKDLs~LgrdlskVII 389 (447)
+...|++.++|+.+.+.|.++|.|+|...++...+..+. -..+|+..++.+.....+ ..|..-++.+|.+++.+++
T Consensus 98 ~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~g-l~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~ 176 (229)
T COG1011 98 LPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLG-LLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALF 176 (229)
T ss_pred CccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcC-ChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEEE
Confidence 677899999999999889999999999999999999998 445899999987766432 3466677888999999999
Q ss_pred EECCchhh
Q 013254 390 IDNSPQVF 397 (447)
Q Consensus 390 IDDsp~~~ 397 (447)
|||+...-
T Consensus 177 VgD~~~~d 184 (229)
T COG1011 177 VGDSLEND 184 (229)
T ss_pred ECCChhhh
Confidence 99999766
No 70
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=95.92 E-value=0.0058 Score=61.19 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=55.6
Q ss_pred CCceEEEEecCcccccccccc----cCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHH
Q 013254 272 RKSVTLVLDLDETLVHSTLEY----CDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQL 346 (447)
Q Consensus 272 ~kkltLVLDLDeTLVhSs~~~----~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~I 346 (447)
.+++.+|||||||+++.+.-. .....|.- -.++.-........-||+.+||+++. +...++|.|+....+.+..
T Consensus 73 ~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~-~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T 151 (266)
T TIGR01533 73 DKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDP-ETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAAT 151 (266)
T ss_pred CCCCEEEEeCccccccChHHHHHHhcCCCcCCH-HHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHH
Confidence 457899999999999876211 11111100 00000001112556799999999997 5589999999887766654
Q ss_pred HHHH---CCCCCeeeeEEEccc
Q 013254 347 LDIL---DPDGKLISRRVYRES 365 (447)
Q Consensus 347 Ld~L---DP~~~lf~~rLyRe~ 365 (447)
+..| +.....+.+.++|+.
T Consensus 152 ~~~Lkk~Gi~~~~~d~lllr~~ 173 (266)
T TIGR01533 152 LKNLKRFGFPQADEEHLLLKKD 173 (266)
T ss_pred HHHHHHcCcCCCCcceEEeCCC
Confidence 4444 433323456677753
No 71
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=95.92 E-value=0.0043 Score=58.54 Aligned_cols=95 Identities=7% Similarity=0.065 Sum_probs=72.8
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchHHHHHHHHHHCCCCCeee-eEEEcccceee---CCceeecccccCCCCCcEE
Q 013254 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLIS-RRVYRESCIFS---DGTYTKDLTVLGVDLAKVA 388 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~-~rLyRe~C~~~---~g~yiKDLs~LgrdlskVI 388 (447)
+...||+.++|+++. +.++|.|++.+.+++.+++.++-.. +|. ..+..++.... ...|.+-+..+|..++++|
T Consensus 87 ~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~~-~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l 163 (221)
T PRK10563 87 LEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGMLH-YFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENCI 163 (221)
T ss_pred CCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChHH-hCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 567899999999994 8999999999999999999887665 675 44455443321 2356667778899999999
Q ss_pred EEECCchhhccCCCceeeeccc
Q 013254 389 IIDNSPQVFRLQVNNGIPIESW 410 (447)
Q Consensus 389 IIDDsp~~~~~q~eNgIpI~~~ 410 (447)
+|+|++.........|+++.-+
T Consensus 164 ~igDs~~di~aA~~aG~~~i~~ 185 (221)
T PRK10563 164 LVDDSSAGAQSGIAAGMEVFYF 185 (221)
T ss_pred EEeCcHhhHHHHHHCCCEEEEE
Confidence 9999998776666677776533
No 72
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=95.89 E-value=0.011 Score=55.24 Aligned_cols=114 Identities=16% Similarity=0.114 Sum_probs=69.6
Q ss_pred CceEEEEecCccccccc-ccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHH
Q 013254 273 KSVTLVLDLDETLVHST-LEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDIL 350 (447)
Q Consensus 273 kkltLVLDLDeTLVhSs-~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~L 350 (447)
+.+.+++|+||||+... +.... +.....+.. |.+ .=++.+. +.++++|.|......+..+++.+
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~-----------~~~~~~~~~-~d~--~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~l 85 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNN-----------GEELKAFNV-RDG--YGIRCLLTSGIEVAIITGRKSKLVEDRMTTL 85 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCC-----------CCEEEEEec-cch--HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHc
Confidence 46799999999999753 11111 111111111 221 1233333 67999999999999999999998
Q ss_pred CCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCchhhccCCCceeee
Q 013254 351 DPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPI 407 (447)
Q Consensus 351 DP~~~lf~~rLyRe~C~~~~g~yiKDLs~LgrdlskVIIIDDsp~~~~~q~eNgIpI 407 (447)
.-.. +|. .+......+.+-+..+|.+++.++.|-|+..-...-...|+.+
T Consensus 86 gl~~-~f~------g~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~ 135 (183)
T PRK09484 86 GITH-LYQ------GQSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLSV 135 (183)
T ss_pred CCce-eec------CCCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCeE
Confidence 7553 442 1111112233445667889999999999987664444455554
No 73
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=95.88 E-value=0.0034 Score=58.81 Aligned_cols=99 Identities=18% Similarity=0.095 Sum_probs=69.5
Q ss_pred EEeeCchHHHHHHHhhc-ccEEEEEcCCchHH--HHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCCCCC
Q 013254 312 YVKQRPHLKTFLERVAE-MFEVVIFTASQSIY--AAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLA 385 (447)
Q Consensus 312 ~V~lRPgl~eFL~~ls~-~YEIvIfTas~~~Y--A~~ILd~LDP~~~lf~~rLyRe~C~~~---~g~yiKDLs~Lgrdls 385 (447)
.+.+.||+.++|++|.+ .|.++|.|++...+ +...+..++-. .+|+..+..+.+... ...|.+-++.+|.+++
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~-~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~ 170 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIM-ALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPE 170 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhH-hhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHH
Confidence 35678999999999985 59999999987654 32222222222 367777765544322 2356677788899999
Q ss_pred cEEEEECCchhhccCCCceeeecccc
Q 013254 386 KVAIIDNSPQVFRLQVNNGIPIESWF 411 (447)
Q Consensus 386 kVIIIDDsp~~~~~q~eNgIpI~~~~ 411 (447)
++++|||++.........|+..--+.
T Consensus 171 ~~l~i~D~~~di~aA~~aG~~~i~v~ 196 (211)
T TIGR02247 171 ECVFLDDLGSNLKPAAALGITTIKVS 196 (211)
T ss_pred HeEEEcCCHHHHHHHHHcCCEEEEEC
Confidence 99999999987766667777665443
No 74
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=95.88 E-value=0.0089 Score=59.84 Aligned_cols=97 Identities=12% Similarity=0.178 Sum_probs=70.9
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHC--CCCCeeeeEEEcccceeeC---CceeecccccCCCCCc
Q 013254 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILD--PDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAK 386 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LD--P~~~lf~~rLyRe~C~~~~---g~yiKDLs~Lgrdlsk 386 (447)
+.+.||+.+||+++.+ .|.++|.|++...++..+++.+. ....+|... ..+.+.... ..|.+-+..+|.++++
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v-~~~~~~~~KP~p~~~~~a~~~~~~~p~~ 221 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVF-AGDDVPKKKPDPDIYNLAAETLGVDPSR 221 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEE-eccccCCCCCCHHHHHHHHHHhCcChHH
Confidence 4689999999999984 69999999999999999998763 111223322 344432211 2455667788999999
Q ss_pred EEEEECCchhhccCCCceeeeccc
Q 013254 387 VAIIDNSPQVFRLQVNNGIPIESW 410 (447)
Q Consensus 387 VIIIDDsp~~~~~q~eNgIpI~~~ 410 (447)
+|+|+|++.-+.....+|+.....
T Consensus 222 ~l~IGDs~~Di~aA~~aG~~~i~v 245 (286)
T PLN02779 222 CVVVEDSVIGLQAAKAAGMRCIVT 245 (286)
T ss_pred EEEEeCCHHhHHHHHHcCCEEEEE
Confidence 999999998876666677666554
No 75
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=95.83 E-value=0.0026 Score=65.13 Aligned_cols=95 Identities=15% Similarity=0.183 Sum_probs=64.5
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEccccee------------eCCceeec-cc
Q 013254 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIF------------SDGTYTKD-LT 378 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~------------~~g~yiKD-Ls 378 (447)
+.++||+.+||+++.+ .+.++|.|++...+++.+++.++-.. .+...+--..-.+ .+...++. ++
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~-~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~ 258 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDA-AVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQ 258 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCe-EEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHH
Confidence 6689999999999985 49999999999999999999987654 3333321110000 01112222 24
Q ss_pred ccCCCCCcEEEEECCchhhccCCCceeeec
Q 013254 379 VLGVDLAKVAIIDNSPQVFRLQVNNGIPIE 408 (447)
Q Consensus 379 ~LgrdlskVIIIDDsp~~~~~q~eNgIpI~ 408 (447)
.+|.+++++|.|-|+..-..+-..-|+.|-
T Consensus 259 ~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA 288 (322)
T PRK11133 259 EYEIPLAQTVAIGDGANDLPMIKAAGLGIA 288 (322)
T ss_pred HcCCChhhEEEEECCHHHHHHHHHCCCeEE
Confidence 668899999999999976655444455443
No 76
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=95.83 E-value=0.012 Score=57.76 Aligned_cols=98 Identities=12% Similarity=0.058 Sum_probs=74.8
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCC-CCcE
Q 013254 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVD-LAKV 387 (447)
Q Consensus 313 V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~---g~yiKDLs~Lgrd-lskV 387 (447)
+..-||+.++|++|. +.|.++|-|++.+.++..+++.+.-.+-+|...+..++....+ ..|.+-+..+|.. ++.+
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~ 179 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAAC 179 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcce
Confidence 467899999999997 5699999999999999999998776653346666666543322 3566777888875 6899
Q ss_pred EEEECCchhhccCCCceeeeccc
Q 013254 388 AIIDNSPQVFRLQVNNGIPIESW 410 (447)
Q Consensus 388 IIIDDsp~~~~~q~eNgIpI~~~ 410 (447)
|+|+|++.-.......|++.-..
T Consensus 180 l~IGDs~~Di~aA~~aG~~~i~v 202 (267)
T PRK13478 180 VKVDDTVPGIEEGLNAGMWTVGV 202 (267)
T ss_pred EEEcCcHHHHHHHHHCCCEEEEE
Confidence 99999998776666677665443
No 77
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=95.78 E-value=0.0087 Score=56.33 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=73.4
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCCC-CeeeeEEEcccceee---CCceeecccccCCC-CCc
Q 013254 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDG-KLISRRVYRESCIFS---DGTYTKDLTVLGVD-LAK 386 (447)
Q Consensus 313 V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~~-~lf~~rLyRe~C~~~---~g~yiKDLs~Lgrd-lsk 386 (447)
..+.||+.+||+++. +.|.+.|.|++...++..+++.++-.. .+|...+..+.-... ...|.+=+.++|.. +++
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 165 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQS 165 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChhH
Confidence 468899999999997 679999999999999999999987652 578877765542211 12455556778876 799
Q ss_pred EEEEECCchhhccCCCceeee
Q 013254 387 VAIIDNSPQVFRLQVNNGIPI 407 (447)
Q Consensus 387 VIIIDDsp~~~~~q~eNgIpI 407 (447)
+++|+|++.-.......|++.
T Consensus 166 ~~~igD~~~Di~aa~~aG~~~ 186 (220)
T TIGR03351 166 VAVAGDTPNDLEAGINAGAGA 186 (220)
T ss_pred eEEeCCCHHHHHHHHHCCCCe
Confidence 999999997766655667765
No 78
>PRK08238 hypothetical protein; Validated
Probab=95.77 E-value=0.0092 Score=64.39 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=40.4
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcc
Q 013254 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRE 364 (447)
Q Consensus 313 V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe 364 (447)
...+|++.++|+++. +.+.++|-|++.+.+++++++.++- |+..+..+
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl----Fd~Vigsd 119 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL----FDGVFASD 119 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC----CCEEEeCC
Confidence 357899999999997 6699999999999999999999853 66666544
No 79
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=95.75 E-value=0.009 Score=55.54 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=65.7
Q ss_pred eeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEEE
Q 013254 314 KQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVAI 389 (447)
Q Consensus 314 ~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~---g~yiKDLs~LgrdlskVII 389 (447)
...||+.++|++|.+ .|.++|.|++...+ ..+++.++-.+ +|...+..+.+.... ..|.+-++.+|.+++++|+
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~~~l~~-~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 182 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEALGLLE-YFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALH 182 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHCCcHH-hcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEE
Confidence 567999999999985 59999999988764 77788776544 788777765544322 2456677888999999999
Q ss_pred EECCc-hhhccCCCcee
Q 013254 390 IDNSP-QVFRLQVNNGI 405 (447)
Q Consensus 390 IDDsp-~~~~~q~eNgI 405 (447)
|+|++ .-.......|+
T Consensus 183 IgD~~~~Di~~A~~aG~ 199 (203)
T TIGR02252 183 IGDSLRNDYQGARAAGW 199 (203)
T ss_pred ECCCchHHHHHHHHcCC
Confidence 99997 33433333444
No 80
>PHA02597 30.2 hypothetical protein; Provisional
Probab=95.67 E-value=0.0047 Score=57.39 Aligned_cols=96 Identities=13% Similarity=0.113 Sum_probs=66.4
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchHHHHHHHHHHCCCC---CeeeeEEEcccceeeCCceeecccccCCCCCcEEE
Q 013254 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDG---KLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAI 389 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~~YEIvIfTas~~~YA~~ILd~LDP~~---~lf~~rLyRe~C~~~~g~yiKDLs~LgrdlskVII 389 (447)
+...||+.++|++|.+.+.+++-|++.......++..+...+ .+|+..+..+........|.+-++.+| ++.+|+
T Consensus 73 ~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~~~kp~~~~~a~~~~~--~~~~v~ 150 (197)
T PHA02597 73 LSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHDESKEKLFIKAKEKYG--DRVVCF 150 (197)
T ss_pred ccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccCcccHHHHHHHHHHhC--CCcEEE
Confidence 568999999999999878887777776665555666654332 245666655544322234445566777 677999
Q ss_pred EECCchhhccCCCc--eeeeccc
Q 013254 390 IDNSPQVFRLQVNN--GIPIESW 410 (447)
Q Consensus 390 IDDsp~~~~~q~eN--gIpI~~~ 410 (447)
|||++......... ||+.--+
T Consensus 151 vgDs~~di~aA~~a~~Gi~~i~~ 173 (197)
T PHA02597 151 VDDLAHNLDAAHEALSQLPVIHM 173 (197)
T ss_pred eCCCHHHHHHHHHHHcCCcEEEe
Confidence 99999988777677 8876654
No 81
>PLN02940 riboflavin kinase
Probab=95.56 E-value=0.0086 Score=62.54 Aligned_cols=95 Identities=11% Similarity=0.088 Sum_probs=74.9
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHH-HHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcE
Q 013254 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLD-ILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKV 387 (447)
Q Consensus 313 V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd-~LDP~~~lf~~rLyRe~C~~~~---g~yiKDLs~LgrdlskV 387 (447)
+...||+.++|++|. +.+.+.|.|++.+.++..+++ .++-. .+|+.++..+++.... ..|.+-++.+|..++++
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~-~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~ 170 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWK-ESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNC 170 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChH-hhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhHE
Confidence 567899999999997 459999999999999998887 55544 4899888887764332 35667778889999999
Q ss_pred EEEECCchhhccCCCceeeec
Q 013254 388 AIIDNSPQVFRLQVNNGIPIE 408 (447)
Q Consensus 388 IIIDDsp~~~~~q~eNgIpI~ 408 (447)
++|+|++.-.......|+..-
T Consensus 171 l~VGDs~~Di~aA~~aGi~~I 191 (382)
T PLN02940 171 LVIEDSLPGVMAGKAAGMEVI 191 (382)
T ss_pred EEEeCCHHHHHHHHHcCCEEE
Confidence 999999987755556666543
No 82
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=95.55 E-value=0.0093 Score=54.18 Aligned_cols=91 Identities=15% Similarity=0.156 Sum_probs=67.3
Q ss_pred eeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCCCCCcEEE
Q 013254 314 KQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVAI 389 (447)
Q Consensus 314 ~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~---~g~yiKDLs~LgrdlskVII 389 (447)
...||+.++|++|. +.+.+.|-|++. .+..+++.+.-.. +|+..+..+.-... ...|.+-++.++.+++++|+
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~~-~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~ 163 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLID-YFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIG 163 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcHh-hCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 56899999999998 559999999764 4567888887654 78877765432211 22456677788999999999
Q ss_pred EECCchhhccCCCceeee
Q 013254 390 IDNSPQVFRLQVNNGIPI 407 (447)
Q Consensus 390 IDDsp~~~~~q~eNgIpI 407 (447)
|+|++.-+......|++.
T Consensus 164 vgD~~~di~aA~~aG~~~ 181 (185)
T TIGR01990 164 IEDAQAGIEAIKAAGMFA 181 (185)
T ss_pred EecCHHHHHHHHHcCCEE
Confidence 999997776666666654
No 83
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=95.54 E-value=0.0093 Score=57.97 Aligned_cols=95 Identities=12% Similarity=0.083 Sum_probs=69.0
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCC--CCCeeeeEEEccccee-eCCceeecccccCCCCCcEE
Q 013254 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDP--DGKLISRRVYRESCIF-SDGTYTKDLTVLGVDLAKVA 388 (447)
Q Consensus 313 V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP--~~~lf~~rLyRe~C~~-~~g~yiKDLs~LgrdlskVI 388 (447)
..+.||+.++|+++. +.+.++|+|++...+...+++..+- -..+|+..+....+.. ....|.+-+..+|.++++++
T Consensus 94 ~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~fd~~~g~KP~p~~y~~i~~~lgv~p~e~l 173 (220)
T TIGR01691 94 SHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYFDTTVGLKTEAQSYVKIAGQLGSPPREIL 173 (220)
T ss_pred cCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEEEeCcccCCCHHHHHHHHHHhCcChhHEE
Confidence 567899999999997 5699999999999999998887531 1124554432111111 12357777888999999999
Q ss_pred EEECCchhhccCCCceeee
Q 013254 389 IIDNSPQVFRLQVNNGIPI 407 (447)
Q Consensus 389 IIDDsp~~~~~q~eNgIpI 407 (447)
+|+|++.-.......|+..
T Consensus 174 fVgDs~~Di~AA~~AG~~t 192 (220)
T TIGR01691 174 FLSDIINELDAARKAGLHT 192 (220)
T ss_pred EEeCCHHHHHHHHHcCCEE
Confidence 9999997776555666654
No 84
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=95.31 E-value=0.03 Score=52.17 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=63.9
Q ss_pred eCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceee--CCceeecccccCCCCCcEEEEE
Q 013254 315 QRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS--DGTYTKDLTVLGVDLAKVAIID 391 (447)
Q Consensus 315 lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~--~g~yiKDLs~LgrdlskVIIID 391 (447)
..|+..++|+.+.+ .+.++|.|++.+.+++.+++.+.-.. +|...+..+..... ...|.+-+..+|.+++++|+|.
T Consensus 107 ~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~-~f~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~vG 185 (197)
T TIGR01548 107 TLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEI-LFPVQIWMEDCPPKPNPEPLILAAKALGVEACHAAMVG 185 (197)
T ss_pred cccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchh-hCCEEEeecCCCCCcCHHHHHHHHHHhCcCcccEEEEe
Confidence 34566999999985 59999999999999999999998764 78877776653321 2245666777899999999999
Q ss_pred CCchh
Q 013254 392 NSPQV 396 (447)
Q Consensus 392 Dsp~~ 396 (447)
|++.-
T Consensus 186 D~~~D 190 (197)
T TIGR01548 186 DTVDD 190 (197)
T ss_pred CCHHH
Confidence 99853
No 85
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=95.26 E-value=0.024 Score=50.22 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=62.6
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceee--CCceeecccccCCCCCcEEE
Q 013254 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS--DGTYTKDLTVLGVDLAKVAI 389 (447)
Q Consensus 313 V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~--~g~yiKDLs~LgrdlskVII 389 (447)
....||+.++|+++. +.+.++|.|++.+.++..+++.+ -..+|...+..++.... ...|.+-++.+|.+. ++++
T Consensus 63 ~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~--l~~~f~~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~~l~ 139 (154)
T TIGR01549 63 EAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH--LGDYFDLILGSDEFGAKPEPEIFLAALESLGLPP-EVLH 139 (154)
T ss_pred heeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH--HHhcCcEEEecCCCCCCcCHHHHHHHHHHcCCCC-CEEE
Confidence 445699999999996 56999999999999999999995 23467777766664311 124556667788888 9999
Q ss_pred EECCchhh
Q 013254 390 IDNSPQVF 397 (447)
Q Consensus 390 IDDsp~~~ 397 (447)
|.|++.-.
T Consensus 140 iGDs~~Di 147 (154)
T TIGR01549 140 VGDNLNDI 147 (154)
T ss_pred EeCCHHHH
Confidence 99997543
No 86
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=95.13 E-value=0.034 Score=53.65 Aligned_cols=85 Identities=14% Similarity=0.246 Sum_probs=62.3
Q ss_pred EeeCchHHHHHHHhhcc-cEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeC---Ccee----ec------cc
Q 013254 313 VKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYT----KD------LT 378 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~~-YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~---g~yi----KD------Ls 378 (447)
+.++||+.+.++++.+. +.++|.|+|...++++|.+.|..+. .+..++-.+.-.+.. |... |. +.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~-~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~ 154 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY-VVANELEIDDGKLTGRVVGPICDGEGKAKALRELAA 154 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch-heeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHH
Confidence 78899999999999955 9999999999999999999999886 566666654411111 1111 11 13
Q ss_pred ccCCCCCcEEEEECCchhhc
Q 013254 379 VLGVDLAKVAIIDNSPQVFR 398 (447)
Q Consensus 379 ~LgrdlskVIIIDDsp~~~~ 398 (447)
.+|.+++.++-+=|+..-..
T Consensus 155 ~~g~~~~~~~a~gDs~nDlp 174 (212)
T COG0560 155 ELGIPLEETVAYGDSANDLP 174 (212)
T ss_pred HcCCCHHHeEEEcCchhhHH
Confidence 45788888888888875443
No 87
>PLN02811 hydrolase
Probab=95.06 E-value=0.017 Score=54.83 Aligned_cols=97 Identities=13% Similarity=0.110 Sum_probs=69.4
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHH-HHHHHCCCCCeeeeEEEcc--cceee---CCceeecccccC---C
Q 013254 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQ-LLDILDPDGKLISRRVYRE--SCIFS---DGTYTKDLTVLG---V 382 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~-ILd~LDP~~~lf~~rLyRe--~C~~~---~g~yiKDLs~Lg---r 382 (447)
+.+.||+.+||+.|.+ .|.+.|-|++.+.+... +++..... .+|...++.+ .+... ...|.+=+..+| .
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~-~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~ 155 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELF-SLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPV 155 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHH-hhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCC
Confidence 4568999999999985 69999999998876554 33322222 3687888777 54322 235666666675 8
Q ss_pred CCCcEEEEECCchhhccCCCceeeeccc
Q 013254 383 DLAKVAIIDNSPQVFRLQVNNGIPIESW 410 (447)
Q Consensus 383 dlskVIIIDDsp~~~~~q~eNgIpI~~~ 410 (447)
.++.+|+|+|+..-.......|++..-.
T Consensus 156 ~~~~~v~IgDs~~di~aA~~aG~~~i~v 183 (220)
T PLN02811 156 DPGKVLVFEDAPSGVEAAKNAGMSVVMV 183 (220)
T ss_pred CccceEEEeccHhhHHHHHHCCCeEEEE
Confidence 8999999999998776666677766544
No 88
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.78 E-value=0.039 Score=64.90 Aligned_cols=97 Identities=10% Similarity=0.103 Sum_probs=78.4
Q ss_pred eCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEEEE
Q 013254 315 QRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVAII 390 (447)
Q Consensus 315 lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~---g~yiKDLs~LgrdlskVIII 390 (447)
..||+.+||++|. +.|.++|.|++...+++.+++.+.-...+|...+..+.+...+ ..|.+-++.+|.+++++|+|
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~I 241 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVVI 241 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEEEE
Confidence 4799999999998 5699999999999999999999876545788888877665332 35677788899999999999
Q ss_pred ECCchhhccCCCceeeecccc
Q 013254 391 DNSPQVFRLQVNNGIPIESWF 411 (447)
Q Consensus 391 DDsp~~~~~q~eNgIpI~~~~ 411 (447)
+|++.-.......|+..-...
T Consensus 242 gDs~~Di~AA~~aGm~~I~v~ 262 (1057)
T PLN02919 242 EDALAGVQAARAAGMRCIAVT 262 (1057)
T ss_pred cCCHHHHHHHHHcCCEEEEEC
Confidence 999987766666776655443
No 89
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=94.69 E-value=0.048 Score=50.30 Aligned_cols=103 Identities=21% Similarity=0.291 Sum_probs=55.0
Q ss_pred eEEEEecCccccccccccc---CCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCc---h-------
Q 013254 275 VTLVLDLDETLVHSTLEYC---DDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQ---S------- 340 (447)
Q Consensus 275 ltLVLDLDeTLVhSs~~~~---~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~-~YEIvIfTas~---~------- 340 (447)
+++.|||||||+....... ...| +..+-|++.+-|+++.+ .|.|||+|+-. .
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~~~~D--------------~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~ 66 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPKDPDD--------------WKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDL 66 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-SSTCG--------------GEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHH
T ss_pred CEEEEeCCCCccCCCCCCcCcCCHHH--------------hhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchH
Confidence 4789999999999753211 1111 24456889999999984 69999999862 1
Q ss_pred ----HHHHHHHHHHCCCCCeeeeEEE---cccceee-CCce---eecccc-cCCCCCcEEEEECCch
Q 013254 341 ----IYAAQLLDILDPDGKLISRRVY---RESCIFS-DGTY---TKDLTV-LGVDLAKVAIIDNSPQ 395 (447)
Q Consensus 341 ----~YA~~ILd~LDP~~~lf~~rLy---Re~C~~~-~g~y---iKDLs~-LgrdlskVIIIDDsp~ 395 (447)
...+.+++.|+- .+ ..++ .+.|..- .|.+ .+++.. +..|+++.+.|=|.+.
T Consensus 67 ~~~~~ki~~il~~l~i---p~-~~~~a~~~d~~RKP~~GM~~~~~~~~~~~~~id~~~Sf~VGDaag 129 (159)
T PF08645_consen 67 ENFHEKIENILKELGI---PI-QVYAAPHKDPCRKPNPGMWEFALKDYNDGVEIDLANSFYVGDAAG 129 (159)
T ss_dssp HHHHHHHHHHHHHCTS----E-EEEECGCSSTTSTTSSHHHHHHCCCTSTT--S-CCC-EEEESSCH
T ss_pred HHHHHHHHHHHHHcCC---ce-EEEecCCCCCCCCCchhHHHHHHHhccccccccccceEEEeccCC
Confidence 233345555532 22 2232 2233321 2333 333332 2358888999988653
No 90
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=94.65 E-value=0.1 Score=50.79 Aligned_cols=58 Identities=31% Similarity=0.339 Sum_probs=50.3
Q ss_pred ceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCC
Q 013254 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDP 352 (447)
Q Consensus 274 kltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP 352 (447)
.+.|++||||||+..... .+|...+.|+++. +.+.++|.|......+.++++.|..
T Consensus 3 ~kli~~DlDGTLl~~~~~-----------------------i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~ 59 (264)
T COG0561 3 IKLLAFDLDGTLLDSNKT-----------------------ISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGL 59 (264)
T ss_pred eeEEEEcCCCCccCCCCc-----------------------cCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCC
Confidence 468999999999987321 5788999999885 7899999999999999999999988
Q ss_pred CC
Q 013254 353 DG 354 (447)
Q Consensus 353 ~~ 354 (447)
.+
T Consensus 60 ~~ 61 (264)
T COG0561 60 DG 61 (264)
T ss_pred Cc
Confidence 76
No 91
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=94.65 E-value=0.07 Score=50.75 Aligned_cols=96 Identities=11% Similarity=0.062 Sum_probs=63.4
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEE--cccceeeC-------------Cceeec
Q 013254 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVY--RESCIFSD-------------GTYTKD 376 (447)
Q Consensus 313 V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLy--Re~C~~~~-------------g~yiKD 376 (447)
+.++||+.+||+++. +.+.++|.|++...|++++++.+-+...++...+. .+...... ..+.+-
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~ 152 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGLIPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSL 152 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHhCCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHH
Confidence 678999999999998 45999999999999999999987222223322221 11111000 012233
Q ss_pred ccccCCCCCcEEEEECCchhhccCCCceeeec
Q 013254 377 LTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIE 408 (447)
Q Consensus 377 Ls~LgrdlskVIIIDDsp~~~~~q~eNgIpI~ 408 (447)
+..++....++|.|-|+..-.......|+.+.
T Consensus 153 l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a 184 (219)
T PRK09552 153 IRKLSDTNDFHIVIGDSITDLEAAKQADKVFA 184 (219)
T ss_pred HHHhccCCCCEEEEeCCHHHHHHHHHCCccee
Confidence 44567777899999999976655545566443
No 92
>PTZ00445 p36-lilke protein; Provisional
Probab=94.58 E-value=0.022 Score=55.51 Aligned_cols=132 Identities=15% Similarity=0.160 Sum_probs=77.8
Q ss_pred CCCceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCchHH-------
Q 013254 271 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIY------- 342 (447)
Q Consensus 271 ~~kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~-~YEIvIfTas~~~Y------- 342 (447)
..+-+.+++|||.|||-.-....... ......+.-..||.+..+++.|.+ .+.|+|-|-+.+.-
T Consensus 40 ~~GIk~Va~D~DnTlI~~HsgG~~~~--------~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~ 111 (219)
T PTZ00445 40 ECGIKVIASDFDLTMITKHSGGYIDP--------DNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRP 111 (219)
T ss_pred HcCCeEEEecchhhhhhhhcccccCC--------CcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCc
Confidence 35667999999999986211100000 001112335679999999999985 69999999998854
Q ss_pred --------HHHHHHHHCCCCCeeee------EEEcccceee--------CCc--e--eecccccCCCCCcEEEEECCchh
Q 013254 343 --------AAQLLDILDPDGKLISR------RVYRESCIFS--------DGT--Y--TKDLTVLGVDLAKVAIIDNSPQV 396 (447)
Q Consensus 343 --------A~~ILd~LDP~~~lf~~------rLyRe~C~~~--------~g~--y--iKDLs~LgrdlskVIIIDDsp~~ 396 (447)
+...|+.=.-+-+ +.. +++.+.-.+. .+. | -+=++..|.+++.+++|||++..
T Consensus 112 ~~Isg~~li~~~lk~s~~~~~-i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~N 190 (219)
T PTZ00445 112 RYISGDRMVEAALKKSKCDFK-IKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNN 190 (219)
T ss_pred ceechHHHHHHHHHhcCccce-eeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHH
Confidence 4444443211111 111 1122221111 111 3 33345669999999999999998
Q ss_pred hccCCCceeeecccc
Q 013254 397 FRLQVNNGIPIESWF 411 (447)
Q Consensus 397 ~~~q~eNgIpI~~~~ 411 (447)
+.....-|+...-+.
T Consensus 191 VeaA~~lGi~ai~f~ 205 (219)
T PTZ00445 191 CKNALKEGYIALHVT 205 (219)
T ss_pred HHHHHHCCCEEEEcC
Confidence 866666666655544
No 93
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=94.39 E-value=0.037 Score=58.90 Aligned_cols=92 Identities=13% Similarity=0.169 Sum_probs=68.9
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEccccee--eCCceeecccccCCCCCcEEE
Q 013254 313 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIF--SDGTYTKDLTVLGVDLAKVAI 389 (447)
Q Consensus 313 V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~--~~g~yiKDLs~LgrdlskVII 389 (447)
+.+.||+.++|+++. +.+.+.|.|++...++..+++.++-.. ||...+..+.... .+..|.+-+..+ +++.+|+
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~-~f~~i~~~d~v~~~~kP~~~~~al~~l--~~~~~v~ 405 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQ-WVTETFSIEQINSLNKSDLVKSILNKY--DIKEAAV 405 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHh-hcceeEecCCCCCCCCcHHHHHHHHhc--CcceEEE
Confidence 567899999999997 569999999999999999999988765 7888777655321 112333444444 3578999
Q ss_pred EECCchhhccCCCceeee
Q 013254 390 IDNSPQVFRLQVNNGIPI 407 (447)
Q Consensus 390 IDDsp~~~~~q~eNgIpI 407 (447)
|.|++.-+......|+..
T Consensus 406 VGDs~~Di~aAk~AG~~~ 423 (459)
T PRK06698 406 VGDRLSDINAAKDNGLIA 423 (459)
T ss_pred EeCCHHHHHHHHHCCCeE
Confidence 999997775555666554
No 94
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=94.32 E-value=0.054 Score=51.54 Aligned_cols=125 Identities=18% Similarity=0.258 Sum_probs=81.6
Q ss_pred ceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCc------------h
Q 013254 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQ------------S 340 (447)
Q Consensus 274 kltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls-~~YEIvIfTas~------------~ 340 (447)
.++|+||.||||+--.-. |. .. .--....||+.+-|..+. ..|.+||+|+-. .
T Consensus 5 ~k~lflDRDGtin~d~~~------yv-----~~---~~~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~ 70 (181)
T COG0241 5 QKALFLDRDGTINIDKGD------YV-----DS---LDDFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFD 70 (181)
T ss_pred CcEEEEcCCCceecCCCc------cc-----Cc---HHHhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHH
Confidence 569999999999643110 10 00 001456899999999997 559999999943 3
Q ss_pred HHHHHHHHHHCCCCCeeeeEEEccc-----ceee---CCceeecccccCCCCCcEEEEECCchhhccCCCc---eeeecc
Q 013254 341 IYAAQLLDILDPDGKLISRRVYRES-----CIFS---DGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNN---GIPIES 409 (447)
Q Consensus 341 ~YA~~ILd~LDP~~~lf~~rLyRe~-----C~~~---~g~yiKDLs~LgrdlskVIIIDDsp~~~~~q~eN---gIpI~~ 409 (447)
.+-+.++..|--.|.-|+.+++..| |.+. .|.+..=+...+.|+++.++|=|+..-..+.... ++.+..
T Consensus 71 ~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~ 150 (181)
T COG0241 71 KLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGVLVLT 150 (181)
T ss_pred HHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCceEEEc
Confidence 3444577777777777999998443 4443 2445555566679999999999997544332222 555555
Q ss_pred ccC
Q 013254 410 WFD 412 (447)
Q Consensus 410 ~~g 412 (447)
|.+
T Consensus 151 ~~~ 153 (181)
T COG0241 151 GIG 153 (181)
T ss_pred Ccc
Confidence 544
No 95
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=94.28 E-value=0.11 Score=48.50 Aligned_cols=54 Identities=28% Similarity=0.284 Sum_probs=44.4
Q ss_pred EEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCC
Q 013254 277 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 353 (447)
Q Consensus 277 LVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~ 353 (447)
|++||||||+++... .-|...+.|+++. +...++|.|.-....+..++..+.-.
T Consensus 1 i~~DlDGTLl~~~~~-----------------------i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGK-----------------------ISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGID 55 (254)
T ss_dssp EEEECCTTTCSTTSS-----------------------SCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC
T ss_pred cEEEECCceecCCCe-----------------------eCHHHHHHHHhhcccceEEEEEccCcccccccccccccch
Confidence 689999999985322 3577888899888 77999999999999999999977643
No 96
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=94.25 E-value=0.084 Score=45.03 Aligned_cols=50 Identities=24% Similarity=0.279 Sum_probs=36.1
Q ss_pred EEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc-cEEEEEcCCchHHHHHHHHHH
Q 013254 277 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDIL 350 (447)
Q Consensus 277 LVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~-YEIvIfTas~~~YA~~ILd~L 350 (447)
+++|+||||++.. ..=||+.+||+++.+. ..+++.|++...-...+.++|
T Consensus 1 ~l~D~dGvl~~g~------------------------~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 1 FLFDLDGVLYNGN------------------------EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp EEEESTTTSEETT------------------------EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred CEEeCccEeEeCC------------------------CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 5799999998742 1249999999999965 999999999855444444444
No 97
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=94.24 E-value=0.13 Score=50.59 Aligned_cols=57 Identities=21% Similarity=0.183 Sum_probs=46.6
Q ss_pred ceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc-cEEEEEcCCchHHHHHHHHHHCC
Q 013254 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILDP 352 (447)
Q Consensus 274 kltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~-YEIvIfTas~~~YA~~ILd~LDP 352 (447)
.+.+++||||||+.... ...|...+.|+++.+. +.++|.|.-....+..+++.++.
T Consensus 4 ~kli~~DlDGTLl~~~~-----------------------~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l 60 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHT-----------------------YSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGL 60 (273)
T ss_pred ceEEEEcCcccCcCCCC-----------------------cCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCC
Confidence 45899999999997421 1357788999999864 89999999999999999999875
Q ss_pred C
Q 013254 353 D 353 (447)
Q Consensus 353 ~ 353 (447)
.
T Consensus 61 ~ 61 (273)
T PRK00192 61 E 61 (273)
T ss_pred C
Confidence 4
No 98
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=93.85 E-value=0.016 Score=52.49 Aligned_cols=76 Identities=13% Similarity=0.118 Sum_probs=61.2
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeecccccCCCCCcEEE
Q 013254 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVAI 389 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~---g~yiKDLs~LgrdlskVII 389 (447)
+..+||+.++|+. ++|.|++...+...+++.+.-.. +|+..+..+.....+ ..|.+-++++|.+++.+++
T Consensus 89 ~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~~-~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~ 161 (175)
T TIGR01493 89 LPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLPW-YFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVLM 161 (175)
T ss_pred CCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCHH-HHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeEe
Confidence 5579999999994 78999999999999999987654 788777766543322 3567778889999999999
Q ss_pred EECCch
Q 013254 390 IDNSPQ 395 (447)
Q Consensus 390 IDDsp~ 395 (447)
|+|++.
T Consensus 162 vgD~~~ 167 (175)
T TIGR01493 162 VAAHQW 167 (175)
T ss_pred EecChh
Confidence 999974
No 99
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=93.75 E-value=0.21 Score=49.17 Aligned_cols=59 Identities=19% Similarity=0.252 Sum_probs=45.4
Q ss_pred CCceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHH
Q 013254 272 RKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDIL 350 (447)
Q Consensus 272 ~kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~L 350 (447)
+.++.+++||||||++.... .-|-..+-|+++. +...++|.|.-....+..+++.|
T Consensus 5 ~~~~lI~~DlDGTLL~~~~~-----------------------i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l 61 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHTY-----------------------DWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTL 61 (271)
T ss_pred CCCeEEEEeCccCCcCCCCc-----------------------CcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHh
Confidence 44679999999999975211 1244667788887 45899999999999999999998
Q ss_pred CCC
Q 013254 351 DPD 353 (447)
Q Consensus 351 DP~ 353 (447)
+..
T Consensus 62 ~~~ 64 (271)
T PRK03669 62 GLQ 64 (271)
T ss_pred CCC
Confidence 754
No 100
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=93.61 E-value=0.12 Score=48.41 Aligned_cols=114 Identities=12% Similarity=0.138 Sum_probs=70.7
Q ss_pred ceEEEEecCcccccccccccCCCCceEEEEecceee-eEEEeeCchHHHHHHHhhcccEEEEEcCCchHHHHHHHHHHCC
Q 013254 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEH-TVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDP 352 (447)
Q Consensus 274 kltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~-~~~V~lRPgl~eFL~~ls~~YEIvIfTas~~~YA~~ILd~LDP 352 (447)
-+++|+|.||+|-.-+. .++.... ...+..|-+.--.+-+ .+.+.+.|.|+....+++.+++.+.-
T Consensus 7 i~~~v~d~dGv~tdg~~------------~~~~~g~~~~~~~~~D~~~~~~L~-~~Gi~laIiT~k~~~~~~~~l~~lgi 73 (169)
T TIGR02726 7 IKLVILDVDGVMTDGRI------------VINDEGIESRNFDIKDGMGVIVLQ-LCGIDVAIITSKKSGAVRHRAEELKI 73 (169)
T ss_pred CeEEEEeCceeeECCeE------------EEcCCCcEEEEEecchHHHHHHHH-HCCCEEEEEECCCcHHHHHHHHHCCC
Confidence 56899999999976431 1111111 2234445554322211 35799999999999999999999976
Q ss_pred CCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCchhhccCCCceeee
Q 013254 353 DGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPI 407 (447)
Q Consensus 353 ~~~lf~~rLyRe~C~~~~g~yiKDLs~LgrdlskVIIIDDsp~~~~~q~eNgIpI 407 (447)
.. +|... ......+..-+..+|.++++++.|-|++.-...-...|+.+
T Consensus 74 ~~-~f~~~------kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~ 121 (169)
T TIGR02726 74 KR-FHEGI------KKKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAV 121 (169)
T ss_pred cE-EEecC------CCCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeE
Confidence 63 55421 00111233444567888899999999986554333344433
No 101
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=93.54 E-value=0.13 Score=48.83 Aligned_cols=88 Identities=9% Similarity=0.052 Sum_probs=58.2
Q ss_pred EEeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcc--cceeeCC---c----------eee
Q 013254 312 YVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRE--SCIFSDG---T----------YTK 375 (447)
Q Consensus 312 ~V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe--~C~~~~g---~----------yiK 375 (447)
.+.+|||+.+||+++.+ .+.++|.|++...|++++++.+.+...++..++.-+ ....... . ..+
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~ 147 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPS 147 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHH
Confidence 37899999999999996 599999999999999999999865443443333211 1000000 0 112
Q ss_pred cccccCCCCCcEEEEECCchhhcc
Q 013254 376 DLTVLGVDLAKVAIIDNSPQVFRL 399 (447)
Q Consensus 376 DLs~LgrdlskVIIIDDsp~~~~~ 399 (447)
-+..++....++|.|-|+..-+..
T Consensus 148 ~l~~~~~~~~~~i~iGDg~~D~~~ 171 (214)
T TIGR03333 148 LIRKLSEPNDYHIVIGDSVTDVEA 171 (214)
T ss_pred HHHHHhhcCCcEEEEeCCHHHHHH
Confidence 233344566789999999876543
No 102
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=93.48 E-value=0.22 Score=46.95 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=46.2
Q ss_pred eEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCC
Q 013254 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPD 353 (447)
Q Consensus 275 ltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~ 353 (447)
+.+++||||||+.... ...|...+-|+++.+ .+.++|.|.-....+.++++.|+..
T Consensus 2 k~v~~DlDGTLl~~~~-----------------------~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~ 58 (215)
T TIGR01487 2 KLVAIDIDGTLTEPNR-----------------------MISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTS 58 (215)
T ss_pred cEEEEecCCCcCCCCc-----------------------ccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCC
Confidence 3789999999995310 246778888999885 4899999999999999999999876
Q ss_pred C
Q 013254 354 G 354 (447)
Q Consensus 354 ~ 354 (447)
+
T Consensus 59 ~ 59 (215)
T TIGR01487 59 G 59 (215)
T ss_pred C
Confidence 4
No 103
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=93.44 E-value=0.16 Score=51.43 Aligned_cols=104 Identities=17% Similarity=0.286 Sum_probs=67.4
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCC---CCCeeeeEEEcccceeeCC---c----eeec-----
Q 013254 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDP---DGKLISRRVYRESCIFSDG---T----YTKD----- 376 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP---~~~lf~~rLyRe~C~~~~g---~----yiKD----- 376 (447)
+.+|||+.+||++|.+ .+.++|+|+|...+++.++..+.- ....++.++.-+......| . +-|.
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~~ 199 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVAL 199 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHHH
Confidence 7889999999999975 499999999999999999998643 3345566664321111111 1 1221
Q ss_pred --ccccC--CCCCcEEEEECCchhhcc-----CCCceeeeccccCCCCch
Q 013254 377 --LTVLG--VDLAKVAIIDNSPQVFRL-----QVNNGIPIESWFDDPSDC 417 (447)
Q Consensus 377 --Ls~Lg--rdlskVIIIDDsp~~~~~-----q~eNgIpI~~~~gd~~D~ 417 (447)
.+.++ .+.+++|+|-|+..-..+ +.+|.|.| .|..+.-+.
T Consensus 200 ~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~i-gfln~~~e~ 248 (277)
T TIGR01544 200 RNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKI-GYLNDRVDE 248 (277)
T ss_pred HHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEE-EecccCHHH
Confidence 12345 678899999999965422 23444444 455554444
No 104
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=93.32 E-value=0.21 Score=48.28 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=42.9
Q ss_pred EEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCC
Q 013254 276 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPD 353 (447)
Q Consensus 276 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~ 353 (447)
++++||||||++... .-|...++|+++.+ ...+++.|.-....+..+++.|...
T Consensus 1 li~~DlDGTLl~~~~------------------------~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 1 VIFTDLDGTLLPPGY------------------------EPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE 55 (225)
T ss_pred CEEEeCCCCCcCCCC------------------------CchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 368999999998411 13568899999985 5999999999988888888888753
No 105
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=93.12 E-value=0.26 Score=47.95 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=44.9
Q ss_pred ceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCC
Q 013254 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDP 352 (447)
Q Consensus 274 kltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP 352 (447)
.+.+++||||||++... .+-|...+.|+++.+ .+.++|.|.-....+..+++.|..
T Consensus 3 ~kli~~DlDGTLl~~~~-----------------------~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~ 59 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDH-----------------------TISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHM 59 (270)
T ss_pred eEEEEEecCCcCcCCCC-----------------------ccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCC
Confidence 35889999999997521 124566788888884 489999999999999999998875
Q ss_pred C
Q 013254 353 D 353 (447)
Q Consensus 353 ~ 353 (447)
.
T Consensus 60 ~ 60 (270)
T PRK10513 60 E 60 (270)
T ss_pred C
Confidence 4
No 106
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=92.80 E-value=0.35 Score=46.83 Aligned_cols=57 Identities=25% Similarity=0.310 Sum_probs=39.8
Q ss_pred eEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCC
Q 013254 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 353 (447)
Q Consensus 275 ltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~ 353 (447)
+++++||||||+..... +.|...+-|+++. +...++|.|.-....+..+++.|...
T Consensus 4 kli~~DlDGTLl~~~~~-----------------------i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (272)
T PRK10530 4 RVIALDLDGTLLTPKKT-----------------------ILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALD 60 (272)
T ss_pred cEEEEeCCCceECCCCc-----------------------cCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 58899999999975311 2445566677766 44777788777777777777777654
Q ss_pred C
Q 013254 354 G 354 (447)
Q Consensus 354 ~ 354 (447)
.
T Consensus 61 ~ 61 (272)
T PRK10530 61 T 61 (272)
T ss_pred C
Confidence 3
No 107
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=92.70 E-value=0.42 Score=45.15 Aligned_cols=57 Identities=12% Similarity=0.245 Sum_probs=44.7
Q ss_pred eEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCC
Q 013254 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPD 353 (447)
Q Consensus 275 ltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~ 353 (447)
+.+++||||||+.... .+.|...+-|+++.+ ...++|.|.-....+.+++..|...
T Consensus 4 kli~~DlDGTLl~~~~-----------------------~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (230)
T PRK01158 4 KAIAIDIDGTITDKDR-----------------------RLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTS 60 (230)
T ss_pred eEEEEecCCCcCCCCC-----------------------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 5889999999996421 135677788888884 4799999999988888888888765
Q ss_pred C
Q 013254 354 G 354 (447)
Q Consensus 354 ~ 354 (447)
+
T Consensus 61 ~ 61 (230)
T PRK01158 61 G 61 (230)
T ss_pred C
Confidence 4
No 108
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=92.67 E-value=0.28 Score=47.43 Aligned_cols=55 Identities=27% Similarity=0.334 Sum_probs=42.4
Q ss_pred EEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCC
Q 013254 276 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPD 353 (447)
Q Consensus 276 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~ 353 (447)
.+++||||||+.... .+.|...+.|+++.+ .+.++|.|......+..+++.+...
T Consensus 1 li~~DlDGTLl~~~~-----------------------~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 1 LIFIDLDGTLLNDDH-----------------------TISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLD 56 (256)
T ss_pred CEEEeCCCCCCCCCC-----------------------ccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 378999999997521 134667788888874 5899999999988888888887655
No 109
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=92.54 E-value=0.28 Score=46.21 Aligned_cols=96 Identities=20% Similarity=0.287 Sum_probs=63.7
Q ss_pred cCCCCceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhccc---EEEEEcCCc------
Q 013254 269 TQGRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMF---EVVIFTASQ------ 339 (447)
Q Consensus 269 ~~~~kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~Y---EIvIfTas~------ 339 (447)
....+-+.||||+|+||+.-.. -..-|-+.+.++++.+.| .|+|+|++.
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~----------------------~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~ 93 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYE----------------------DEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDP 93 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCc----------------------CcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCc
Confidence 3456777999999999975321 134678889999999776 399999984
Q ss_pred -hHHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeecccccC-----CCCCcEEEEECCc
Q 013254 340 -SIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLG-----VDLAKVAIIDNSP 394 (447)
Q Consensus 340 -~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~g~yiKDLs~Lg-----rdlskVIIIDDsp 394 (447)
..-|+.+-+.|... .+.|+ +. .++.+-+-+..++ ..++.+++|-|+.
T Consensus 94 ~~~~a~~~~~~lgIp--vl~h~-----~k-KP~~~~~i~~~~~~~~~~~~p~eiavIGDrl 146 (168)
T PF09419_consen 94 DGERAEALEKALGIP--VLRHR-----AK-KPGCFREILKYFKCQKVVTSPSEIAVIGDRL 146 (168)
T ss_pred cHHHHHHHHHhhCCc--EEEeC-----CC-CCccHHHHHHHHhhccCCCCchhEEEEcchH
Confidence 66777777877633 23222 21 1233322333332 3588999999987
No 110
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=92.34 E-value=0.3 Score=46.07 Aligned_cols=54 Identities=24% Similarity=0.256 Sum_probs=42.7
Q ss_pred EEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCC
Q 013254 277 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPD 353 (447)
Q Consensus 277 LVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~ 353 (447)
+++||||||+.+... .-|-..+.|+++.+ ...++|.|.-....+.++++.+...
T Consensus 2 i~~DlDGTLL~~~~~-----------------------~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 2 VFSDLDGTLLDSHSY-----------------------DWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred EEEeCCCCCcCCCCC-----------------------CcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 789999999975310 12236788999885 5899999999999999999998643
No 111
>PRK10976 putative hydrolase; Provisional
Probab=91.90 E-value=0.47 Score=46.08 Aligned_cols=56 Identities=23% Similarity=0.246 Sum_probs=36.5
Q ss_pred eEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCC
Q 013254 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 353 (447)
Q Consensus 275 ltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~ 353 (447)
+.+++||||||+..... +-|...+-|+++. +...++|-|.-....+.++++.|+..
T Consensus 3 kli~~DlDGTLl~~~~~-----------------------is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (266)
T PRK10976 3 QVVASDLDGTLLSPDHT-----------------------LSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIK 59 (266)
T ss_pred eEEEEeCCCCCcCCCCc-----------------------CCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 58899999999976311 2344555566665 34677777776666666666666544
No 112
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=91.83 E-value=0.46 Score=46.48 Aligned_cols=57 Identities=19% Similarity=0.220 Sum_probs=39.2
Q ss_pred eEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCC
Q 013254 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPD 353 (447)
Q Consensus 275 ltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~ 353 (447)
+++++||||||+.... .+-|...+-|+++.+ ...++|-|.-....+.++++.++..
T Consensus 3 kli~~DlDGTLl~~~~-----------------------~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (272)
T PRK15126 3 RLAAFDMDGTLLMPDH-----------------------HLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLD 59 (272)
T ss_pred cEEEEeCCCcCcCCCC-----------------------cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCC
Confidence 4889999999997521 124555666777763 4777777777777777777777654
Q ss_pred C
Q 013254 354 G 354 (447)
Q Consensus 354 ~ 354 (447)
.
T Consensus 60 ~ 60 (272)
T PRK15126 60 A 60 (272)
T ss_pred C
Confidence 3
No 113
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=91.72 E-value=0.38 Score=44.25 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=41.9
Q ss_pred EEEEecCccccccccc-ccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCchHHHH---HHHHHH
Q 013254 276 TLVLDLDETLVHSTLE-YCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAA---QLLDIL 350 (447)
Q Consensus 276 tLVLDLDeTLVhSs~~-~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~---~ILd~L 350 (447)
.+++|+||||+.+... ... . ..... +..|++.++++++.+ .|.+++.|+.....+. +.+..+
T Consensus 1 iVisDIDGTL~~sd~~~~~~------~----~~~~~---~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~ 67 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVV------P----IIGKD---WTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQI 67 (157)
T ss_pred CEEEecCCCCcccccccccc------c----ccccC---cCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHh
Confidence 3789999999977411 100 0 00011 347999999999985 5889999988877765 556553
No 114
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=91.70 E-value=0.35 Score=44.98 Aligned_cols=54 Identities=31% Similarity=0.375 Sum_probs=43.4
Q ss_pred EEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc-cEEEEEcCCchHHHHHHHHHHC
Q 013254 276 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILD 351 (447)
Q Consensus 276 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~-YEIvIfTas~~~YA~~ILd~LD 351 (447)
+|++|+||||+.... -...|.+.+.|+++.+. ..++|.|.....++..+++.++
T Consensus 1 li~~D~DgTL~~~~~----------------------~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~ 55 (204)
T TIGR01484 1 LLFFDLDGTLLDPNA----------------------HELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLP 55 (204)
T ss_pred CEEEeCcCCCcCCCC----------------------CcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCC
Confidence 378999999997420 12358889999999865 8999999999999999998753
No 115
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.69 E-value=0.2 Score=54.18 Aligned_cols=129 Identities=19% Similarity=0.256 Sum_probs=70.6
Q ss_pred CCCceEEEEecCcccccccccccCCCCceEEEEecc-eeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHH
Q 013254 271 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNM-KEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLD 348 (447)
Q Consensus 271 ~~kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~-~~~~~~V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd 348 (447)
.+.+++||||||+||.--... .|=.-.+.... .....| =-+.+|...+. +.+=+.|.+-....-|..+..
T Consensus 219 g~~kK~LVLDLDNTLWGGVIG----edGv~GI~Ls~~~~G~~f----k~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~ 290 (574)
T COG3882 219 GKSKKALVLDLDNTLWGGVIG----EDGVDGIRLSNSAEGEAF----KTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFR 290 (574)
T ss_pred CcccceEEEecCCcccccccc----cccccceeecCCCCchhH----HHHHHHHHHHHhccEEEEEecCCchhhHHHHHh
Confidence 455789999999999544321 11111111110 000000 01455566665 457788888888888887765
Q ss_pred HHCCCCCeeeeEEEcc-----cceeeC--CceeecccccCCCCCcEEEEECCchhhccCCCce-eeeccccCC
Q 013254 349 ILDPDGKLISRRVYRE-----SCIFSD--GTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNG-IPIESWFDD 413 (447)
Q Consensus 349 ~LDP~~~lf~~rLyRe-----~C~~~~--g~yiKDLs~LgrdlskVIIIDDsp~~~~~q~eNg-IpI~~~~gd 413 (447)
+- |+ ..|--+ .|.+.+ .+..|-...|+..+...|+|||+|.....-..++ |.+..+-.|
T Consensus 291 kh-p~-----MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvFiDD~p~ErE~vk~~~~v~Vi~~~~D 357 (574)
T COG3882 291 KH-PD-----MILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVFIDDNPAERELVKRELPVSVIEFPED 357 (574)
T ss_pred hC-CC-----eEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEEecCCHHHHHHHHhcCceeeccCCCC
Confidence 42 21 112212 222222 2345666788999999999999997664333233 555555443
No 116
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=91.65 E-value=0.39 Score=46.68 Aligned_cols=55 Identities=25% Similarity=0.236 Sum_probs=43.3
Q ss_pred EEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc-cEEEEEcCCchHHHHHHHHHHCCC
Q 013254 276 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILDPD 353 (447)
Q Consensus 276 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~-YEIvIfTas~~~YA~~ILd~LDP~ 353 (447)
.+++||||||++.... ..+...++|+++.+. +.+++.|.-....+..+++.++..
T Consensus 1 li~~DlDGTll~~~~~-----------------------~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 1 WIFTDLDGTLLDPHGY-----------------------DWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLE 56 (256)
T ss_pred CEEEcCCCCCcCCCCc-----------------------CchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 3789999999986310 123578999999865 899999999999999999998743
No 117
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=91.53 E-value=0.31 Score=49.67 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=41.2
Q ss_pred eEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-----ccEEEEEcCCc----hHHHHH
Q 013254 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-----MFEVVIFTASQ----SIYAAQ 345 (447)
Q Consensus 275 ltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~-----~YEIvIfTas~----~~YA~~ 345 (447)
+.++||+||||+++. ..-|+..+||+.+.. .+.++++|+.. +.+++.
T Consensus 1 ~~~ifD~DGvL~~g~------------------------~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~ 56 (321)
T TIGR01456 1 FGFAFDIDGVLFRGK------------------------KPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEE 56 (321)
T ss_pred CEEEEeCcCceECCc------------------------cccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHH
Confidence 368999999999863 125899999999996 78899999875 567777
Q ss_pred HHHHHC
Q 013254 346 LLDILD 351 (447)
Q Consensus 346 ILd~LD 351 (447)
+.+.+.
T Consensus 57 l~~~lG 62 (321)
T TIGR01456 57 ISSLLG 62 (321)
T ss_pred HHHHcC
Confidence 756553
No 118
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=91.14 E-value=0.23 Score=46.96 Aligned_cols=119 Identities=20% Similarity=0.301 Sum_probs=82.4
Q ss_pred CCCccCCCCceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc-cEEEEEcCCchHHH
Q 013254 265 SPKETQGRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQSIYA 343 (447)
Q Consensus 265 ~P~~~~~~kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~-YEIvIfTas~~~YA 343 (447)
.|.....++-+.+|+|||+|||- |... ..-|-+.+.+..+... -.++|.++..+.-+
T Consensus 19 ~~~~L~~~Gikgvi~DlDNTLv~--wd~~--------------------~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV 76 (175)
T COG2179 19 TPDILKAHGIKGVILDLDNTLVP--WDNP--------------------DATPELRAWLAELKEAGIKVVVVSNNKESRV 76 (175)
T ss_pred CHHHHHHcCCcEEEEeccCceec--ccCC--------------------CCCHHHHHHHHHHHhcCCEEEEEeCCCHHHH
Confidence 34444567788999999999985 3221 1247889999999955 89999999999999
Q ss_pred HHHHHHHCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECCc--hhhccCCCc--eeeeccccC
Q 013254 344 AQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSP--QVFRLQVNN--GIPIESWFD 412 (447)
Q Consensus 344 ~~ILd~LDP~~~lf~~rLyRe~C~~~~g~yiKDLs~LgrdlskVIIIDDsp--~~~~~q~eN--gIpI~~~~g 412 (447)
..++..||-.. + ++-. .-....+.|-|..++.+.++|+.|-|.- ++...+... .|.|+|-..
T Consensus 77 ~~~~~~l~v~f--i----~~A~-KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~Pl~~ 142 (175)
T COG2179 77 ARAAEKLGVPF--I----YRAK-KPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILVEPLVA 142 (175)
T ss_pred HhhhhhcCCce--e----eccc-CccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEEEEecc
Confidence 99999998652 1 1110 0011245567778899999999999987 355544322 366666543
No 119
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=90.79 E-value=0.67 Score=41.67 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=41.1
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEE
Q 013254 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVY 362 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLy 362 (447)
+.++||+.++|+++.+ .+.++|.|++...|++++++.+.... +|..++.
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~-~~~~~~~ 121 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDD-VFANRLE 121 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCch-heeeeEE
Confidence 5679999999999974 58999999999999999999987653 5655554
No 120
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=90.68 E-value=0.34 Score=47.88 Aligned_cols=49 Identities=18% Similarity=0.331 Sum_probs=40.6
Q ss_pred EeeCchHHHHHHHhhc---ccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEE
Q 013254 313 VKQRPHLKTFLERVAE---MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVY 362 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~---~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLy 362 (447)
+...||+.+|++.+++ .++++|-|-|..-|-+.||+.-+-.+ +|+.++.
T Consensus 70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~-~f~~I~T 121 (234)
T PF06888_consen 70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRD-CFSEIFT 121 (234)
T ss_pred CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCcc-ccceEEe
Confidence 7789999999999953 79999999999999999999977654 4544333
No 121
>PRK10444 UMP phosphatase; Provisional
Probab=90.66 E-value=0.42 Score=47.14 Aligned_cols=53 Identities=23% Similarity=0.387 Sum_probs=42.2
Q ss_pred EEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCC
Q 013254 276 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDP 352 (447)
Q Consensus 276 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP 352 (447)
.+++||||||++.. ..=||..+||+++.+ ...+++.|+....-...+++.|.-
T Consensus 3 ~v~~DlDGtL~~~~------------------------~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~ 56 (248)
T PRK10444 3 NVICDIDGVLMHDN------------------------VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFAT 56 (248)
T ss_pred EEEEeCCCceEeCC------------------------eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 78999999998762 125899999999985 689999999988767777766643
No 122
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=90.31 E-value=0.74 Score=43.23 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=39.0
Q ss_pred EEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCC
Q 013254 277 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDP 352 (447)
Q Consensus 277 LVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP 352 (447)
+++||||||+.+.. .+.|-..+-|+++.+ ...+++.|.-....+.++++.|..
T Consensus 1 i~~DlDGTLl~~~~-----------------------~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~ 54 (225)
T TIGR01482 1 IASDIDGTLTDPNR-----------------------AINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGT 54 (225)
T ss_pred CeEeccCccCCCCc-----------------------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCC
Confidence 57999999997531 124556677777774 478888888888888888888863
No 123
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=90.15 E-value=0.64 Score=46.14 Aligned_cols=59 Identities=15% Similarity=0.075 Sum_probs=40.7
Q ss_pred ceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc--ccEEEEEcCCchHHHHHHHHHH
Q 013254 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE--MFEVVIFTASQSIYAAQLLDIL 350 (447)
Q Consensus 274 kltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~--~YEIvIfTas~~~YA~~ILd~L 350 (447)
+..|++|+||||+.....+.. ...-|.+.+-|+.|.+ ...++|.|.-...-+..++..+
T Consensus 14 ~~li~~D~DGTLl~~~~~p~~------------------~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~ 74 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKPHPDQ------------------VVVPDNILQGLQLLATANDGALALISGRSMVELDALAKPY 74 (266)
T ss_pred CEEEEEecCCCCCCCCCCccc------------------ccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcc
Confidence 679999999999975322211 1224777888888875 4677888877777776666544
No 124
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=90.10 E-value=0.18 Score=48.79 Aligned_cols=89 Identities=10% Similarity=0.113 Sum_probs=60.9
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceee---CCceeecccccCCCCCcEEE
Q 013254 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS---DGTYTKDLTVLGVDLAKVAI 389 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~---~g~yiKDLs~LgrdlskVII 389 (447)
+..-||+.++|++|.+.|.++|.|++... ++.+.-. .+|+..+..+..... ...|.+-+..+|.+++++++
T Consensus 112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl~-~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~ 185 (238)
T PRK10748 112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PELFGLG-DYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILH 185 (238)
T ss_pred CCCCccHHHHHHHHHcCCCEEEEECCCch-----HHHCCcH-HhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEEE
Confidence 44558999999999988999999998875 2333332 477777765443222 12455667788999999999
Q ss_pred EECCc-hhhccCCCceeee
Q 013254 390 IDNSP-QVFRLQVNNGIPI 407 (447)
Q Consensus 390 IDDsp-~~~~~q~eNgIpI 407 (447)
|-|++ .-......+|+..
T Consensus 186 VGD~~~~Di~~A~~aG~~~ 204 (238)
T PRK10748 186 VGDDLTTDVAGAIRCGMQA 204 (238)
T ss_pred EcCCcHHHHHHHHHCCCeE
Confidence 98884 4443344566554
No 125
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=89.38 E-value=0.48 Score=46.69 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=34.4
Q ss_pred EEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCchH
Q 013254 276 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSI 341 (447)
Q Consensus 276 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~-~YEIvIfTas~~~ 341 (447)
++++||||||++..... =..=|+..++|+++.+ ...+++.|+....
T Consensus 3 ~i~~D~DGtl~~~~~~~--------------------~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~ 49 (257)
T TIGR01458 3 GVLLDISGVLYISDAKS--------------------GVAVPGSQEAVKRLRGASVKVRFVTNTTKE 49 (257)
T ss_pred EEEEeCCCeEEeCCCcc--------------------cCcCCCHHHHHHHHHHCCCeEEEEECCCCC
Confidence 78999999998763100 0025899999999995 5999999976554
No 126
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=89.31 E-value=0.33 Score=48.17 Aligned_cols=102 Identities=17% Similarity=0.172 Sum_probs=68.1
Q ss_pred EEeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEccc---------------ceeeCCce--
Q 013254 312 YVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRES---------------CIFSDGTY-- 373 (447)
Q Consensus 312 ~V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~---------------C~~~~g~y-- 373 (447)
+...=|.+-+|++.+. +..-++..|+....|...-++.|---|--|+...+++. -.+.+|..
T Consensus 79 ~~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft 158 (252)
T PF11019_consen 79 MELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFT 158 (252)
T ss_pred eEEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEe
Confidence 3556789999999999 66999999999999999988887544432333321111 11222311
Q ss_pred ---------eecccccCCCCCcEEEEECCchhh----ccCCCceeeeccccCC
Q 013254 374 ---------TKDLTVLGVDLAKVAIIDNSPQVF----RLQVNNGIPIESWFDD 413 (447)
Q Consensus 374 ---------iKDLs~LgrdlskVIIIDDsp~~~----~~q~eNgIpI~~~~gd 413 (447)
..=|..+|..++++|+|||+.... ..-...+|....++..
T Consensus 159 ~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt 211 (252)
T PF11019_consen 159 GGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYT 211 (252)
T ss_pred CCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEc
Confidence 122356799999999999999755 2223477877777643
No 127
>PTZ00174 phosphomannomutase; Provisional
Probab=89.21 E-value=0.98 Score=44.01 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=35.8
Q ss_pred ceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc-cEEEEEcCCchHHHHHHHH
Q 013254 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLD 348 (447)
Q Consensus 274 kltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~-YEIvIfTas~~~YA~~ILd 348 (447)
.+.+++||||||+++... +-|...+-|+++.+. ..++|.|.-...-+...+.
T Consensus 5 ~klia~DlDGTLL~~~~~-----------------------is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 5 KTILLFDVDGTLTKPRNP-----------------------ITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred CeEEEEECcCCCcCCCCC-----------------------CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 468999999999986321 246677778888754 7888888765554444443
No 128
>PLN02645 phosphoglycolate phosphatase
Probab=88.73 E-value=0.57 Score=47.46 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=39.6
Q ss_pred ceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHH
Q 013254 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDIL 350 (447)
Q Consensus 274 kltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~L 350 (447)
-.+++||+||||++.. . + =||+.++|+++. +...+++.|+....-...+++.|
T Consensus 28 ~~~~~~D~DGtl~~~~-~---------------------~--~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l 81 (311)
T PLN02645 28 VETFIFDCDGVIWKGD-K---------------------L--IEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKF 81 (311)
T ss_pred CCEEEEeCcCCeEeCC-c---------------------c--CcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence 3488999999997642 0 1 289999999998 56999999998855555555444
No 129
>PLN02423 phosphomannomutase
Probab=88.43 E-value=1.1 Score=43.76 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=36.6
Q ss_pred CCceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCchHHHHHHHHHHC
Q 013254 272 RKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILD 351 (447)
Q Consensus 272 ~kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~YEIvIfTas~~~YA~~ILd~LD 351 (447)
+.+..+++||||||+..... +-|...+.|+++.+...+++.|.- .| ..+.+.+.
T Consensus 5 ~~~~i~~~D~DGTLl~~~~~-----------------------i~~~~~~ai~~l~~~i~fviaTGR--~~-~~~~~~~~ 58 (245)
T PLN02423 5 KPGVIALFDVDGTLTAPRKE-----------------------ATPEMLEFMKELRKVVTVGVVGGS--DL-SKISEQLG 58 (245)
T ss_pred ccceEEEEeccCCCcCCCCc-----------------------CCHHHHHHHHHHHhCCEEEEECCc--CH-HHHHHHhc
Confidence 34556679999999976321 246777889999977777777765 33 24555554
Q ss_pred C
Q 013254 352 P 352 (447)
Q Consensus 352 P 352 (447)
+
T Consensus 59 ~ 59 (245)
T PLN02423 59 K 59 (245)
T ss_pred c
Confidence 4
No 130
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=88.32 E-value=0.74 Score=45.66 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=32.4
Q ss_pred eEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCc
Q 013254 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQ 339 (447)
Q Consensus 275 ltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~-~YEIvIfTas~ 339 (447)
..+++|+||||++.. ..-||+.++|+++.+ ...+++.|+..
T Consensus 3 ~~~~~D~DGtl~~~~------------------------~~~~ga~e~l~~L~~~g~~~~~~Tnns 44 (279)
T TIGR01452 3 QGFIFDCDGVLWLGE------------------------RVVPGAPELLDRLARAGKAALFVTNNS 44 (279)
T ss_pred cEEEEeCCCceEcCC------------------------eeCcCHHHHHHHHHHCCCeEEEEeCCC
Confidence 378899999997742 124789999999985 58999999855
No 131
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=87.62 E-value=1.5 Score=45.01 Aligned_cols=57 Identities=12% Similarity=0.168 Sum_probs=42.9
Q ss_pred eEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCC
Q 013254 275 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPD 353 (447)
Q Consensus 275 ltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~ 353 (447)
+++++||||||+..... .-+-..+-|+++.+ ...+++.|+-+..-...+.+.|...
T Consensus 2 KLIftDLDGTLLd~~~~-----------------------~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 2 RLVLSSLDGSLLDLEFN-----------------------SYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred cEEEEeCCCCCcCCCCc-----------------------CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 47899999999975211 12346777888884 5899999998888888888888765
Q ss_pred C
Q 013254 354 G 354 (447)
Q Consensus 354 ~ 354 (447)
.
T Consensus 59 ~ 59 (302)
T PRK12702 59 H 59 (302)
T ss_pred C
Confidence 3
No 132
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=87.15 E-value=0.77 Score=42.44 Aligned_cols=49 Identities=22% Similarity=0.269 Sum_probs=41.3
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEE
Q 013254 313 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVY 362 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLy 362 (447)
...+|++.++|+++.+ .+.++|.|++...+++.+++.+.-.. +|..++.
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~-~~~~~l~ 135 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDN-AIGTRLE 135 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcc-eEecceE
Confidence 3579999999999975 59999999999999999999988765 5665443
No 133
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=86.35 E-value=1.4 Score=42.73 Aligned_cols=60 Identities=25% Similarity=0.081 Sum_probs=38.3
Q ss_pred ceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhccc-EEEEEcCCchHHHHHHHHHHCC
Q 013254 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMF-EVVIFTASQSIYAAQLLDILDP 352 (447)
Q Consensus 274 kltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~Y-EIvIfTas~~~YA~~ILd~LDP 352 (447)
++.++.||||||+...... -...|.+.+.++++.+.. .+++-|.-+..=+.++++.+.+
T Consensus 1 ~~li~tDlDGTLl~~~~~~--------------------~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~ 60 (249)
T TIGR01485 1 RLLLVSDLDNTLVDHTDGD--------------------NQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPL 60 (249)
T ss_pred CeEEEEcCCCcCcCCCCCC--------------------hHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCC
Confidence 4688999999999632000 123577788888877665 6666666665666666665544
Q ss_pred C
Q 013254 353 D 353 (447)
Q Consensus 353 ~ 353 (447)
.
T Consensus 61 ~ 61 (249)
T TIGR01485 61 L 61 (249)
T ss_pred C
Confidence 3
No 134
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=85.35 E-value=1.4 Score=43.05 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=30.7
Q ss_pred EEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCc
Q 013254 276 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQ 339 (447)
Q Consensus 276 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls-~~YEIvIfTas~ 339 (447)
.+++|+||||++... .=|+..++|+++. +...+++.|++.
T Consensus 3 ~~~~D~DGtl~~~~~------------------------~i~~a~~~l~~l~~~g~~~~~~Tnn~ 43 (249)
T TIGR01457 3 GYLIDLDGTMYKGKE------------------------RIPEAETFVHELQKRDIPYLFVTNNS 43 (249)
T ss_pred EEEEeCCCceEcCCe------------------------eCcCHHHHHHHHHHCCCeEEEEeCCC
Confidence 789999999987521 1368899999998 458888998633
No 135
>PLN02887 hydrolase family protein
Probab=84.34 E-value=2.4 Score=47.12 Aligned_cols=58 Identities=22% Similarity=0.209 Sum_probs=44.8
Q ss_pred CceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHC
Q 013254 273 KSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILD 351 (447)
Q Consensus 273 kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LD 351 (447)
+.+.+++||||||+.... .+-|...+-|+++. +...++|.|.-...-+..+++.|+
T Consensus 307 ~iKLIa~DLDGTLLn~d~-----------------------~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~ 363 (580)
T PLN02887 307 KFSYIFCDMDGTLLNSKS-----------------------QISETNAKALKEALSRGVKVVIATGKARPAVIDILKMVD 363 (580)
T ss_pred CccEEEEeCCCCCCCCCC-----------------------ccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhC
Confidence 456899999999997631 12455677788887 559999999998888888898886
Q ss_pred CC
Q 013254 352 PD 353 (447)
Q Consensus 352 P~ 353 (447)
..
T Consensus 364 l~ 365 (580)
T PLN02887 364 LA 365 (580)
T ss_pred cc
Confidence 53
No 136
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=83.86 E-value=1.5 Score=42.55 Aligned_cols=50 Identities=26% Similarity=0.323 Sum_probs=37.2
Q ss_pred EEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCc----hHHHHHHHHHH
Q 013254 277 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQ----SIYAAQLLDIL 350 (447)
Q Consensus 277 LVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~-~YEIvIfTas~----~~YA~~ILd~L 350 (447)
++||+||||+.... .=|++.++|+.+.+ .+.+++-|++. ..+++.+.+.+
T Consensus 1 ~lfD~DGvL~~~~~------------------------~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~ 55 (236)
T TIGR01460 1 FLFDIDGVLWLGHK------------------------PIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLL 55 (236)
T ss_pred CEEeCcCccCcCCc------------------------cCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 47999999987631 13689999999985 48999998555 56777776643
No 137
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=83.70 E-value=1.6 Score=44.00 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=39.4
Q ss_pred ceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc-cEEEEEcCCchHHHHHHHHHH
Q 013254 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDIL 350 (447)
Q Consensus 274 kltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~-YEIvIfTas~~~YA~~ILd~L 350 (447)
..++++||||||++-. ..=||+.+||+++.+. -.+++-|++...-.+.+..+|
T Consensus 8 y~~~l~DlDGvl~~G~------------------------~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L 61 (269)
T COG0647 8 YDGFLFDLDGVLYRGN------------------------EAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARL 61 (269)
T ss_pred cCEEEEcCcCceEeCC------------------------ccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 3478999999998753 1249999999999965 899999998865444333333
No 138
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=83.35 E-value=4.5 Score=45.87 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=45.5
Q ss_pred CCCceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHH
Q 013254 271 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDI 349 (447)
Q Consensus 271 ~~kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~ 349 (447)
..+++.+++||||||++... ++. +...+-|+.+.+ ...+++.|.-....+..+++.
T Consensus 413 ~~~~KLIfsDLDGTLLd~d~---------------------~i~--~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~ 469 (694)
T PRK14502 413 GQFKKIVYTDLDGTLLNPLT---------------------YSY--STALDALRLLKDKELPLVFCSAKTMGEQDLYRNE 469 (694)
T ss_pred CceeeEEEEECcCCCcCCCC---------------------ccC--HHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHH
Confidence 46678999999999998521 111 234566777774 589999999999999999998
Q ss_pred HCCC
Q 013254 350 LDPD 353 (447)
Q Consensus 350 LDP~ 353 (447)
|+..
T Consensus 470 Lgl~ 473 (694)
T PRK14502 470 LGIK 473 (694)
T ss_pred cCCC
Confidence 8754
No 139
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=82.57 E-value=3.2 Score=40.18 Aligned_cols=41 Identities=17% Similarity=0.350 Sum_probs=37.3
Q ss_pred EeeCchHHHHHHHhhcc-cEEEEEcCCchHHHHHHHHHHCCC
Q 013254 313 VKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILDPD 353 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~~-YEIvIfTas~~~YA~~ILd~LDP~ 353 (447)
+++|||.++|.+++.++ -.++|-++|+..|..+++..|--+
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgk 113 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGK 113 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccc
Confidence 88999999999999966 899999999999999999987643
No 140
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=82.23 E-value=0.69 Score=45.73 Aligned_cols=40 Identities=18% Similarity=0.458 Sum_probs=34.9
Q ss_pred EeeCchHHHHHHHhhcc--cEEEEEcCCchHHHHHHHHHHCC
Q 013254 313 VKQRPHLKTFLERVAEM--FEVVIFTASQSIYAAQLLDILDP 352 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~~--YEIvIfTas~~~YA~~ILd~LDP 352 (447)
+-.-||+-+.++.+++. ||++|-+-+..-+.+.+|++.+-
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~ 124 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGI 124 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccH
Confidence 56679999999999854 89999999999999999998654
No 141
>PLN02151 trehalose-phosphatase
Probab=81.84 E-value=2.7 Score=44.09 Aligned_cols=60 Identities=15% Similarity=0.187 Sum_probs=44.4
Q ss_pred CCCceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCchHHHHHHHH
Q 013254 271 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLD 348 (447)
Q Consensus 271 ~~kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~YEIvIfTas~~~YA~~ILd 348 (447)
..++..|+||+||||+--...+ -.+..-|.+.+-|+.|++.+.++|-|--...-.+.++.
T Consensus 95 ~~~~~ll~lDyDGTL~PIv~~P------------------~~A~~~~~~~~aL~~La~~~~vaIvSGR~~~~l~~~~~ 154 (354)
T PLN02151 95 EGKQIVMFLDYDGTLSPIVDDP------------------DRAFMSKKMRNTVRKLAKCFPTAIVSGRCREKVSSFVK 154 (354)
T ss_pred cCCceEEEEecCccCCCCCCCc------------------ccccCCHHHHHHHHHHhcCCCEEEEECCCHHHHHHHcC
Confidence 4567899999999998432111 12445688999999999888888888887777776654
No 142
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=81.72 E-value=1.4 Score=42.80 Aligned_cols=48 Identities=19% Similarity=0.171 Sum_probs=32.4
Q ss_pred CceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEE--EEcCC
Q 013254 273 KSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVV--IFTAS 338 (447)
Q Consensus 273 kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~YEIv--IfTas 338 (447)
|+..|+||+||||+-....+. ....=|++.+.|+.|++....+ |-|.-
T Consensus 2 ~~~~l~lD~DGTL~~~~~~p~------------------~~~~~~~~~~~L~~L~~~~~~~v~ivSGR 51 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVPDPD------------------AAVVSDRLLTILQKLAARPHNAIWIISGR 51 (244)
T ss_pred CcEEEEEecCccccCCcCCCc------------------ccCCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 567899999999985321110 1234588999999999876544 44443
No 143
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=81.63 E-value=1.5 Score=43.88 Aligned_cols=80 Identities=20% Similarity=0.213 Sum_probs=42.2
Q ss_pred CCCceEEEEecCcccccccccc----cCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEE-cCCchHH-HH
Q 013254 271 GRKSVTLVLDLDETLVHSTLEY----CDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIF-TASQSIY-AA 344 (447)
Q Consensus 271 ~~kkltLVLDLDeTLVhSs~~~----~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~YEIvIf-Tas~~~Y-A~ 344 (447)
..|++.+|||||||.+.-+--. ..+..|+-. ..+.-...---+.=||+.|||+++-++-=.|.| |.-.++- .+
T Consensus 76 k~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe-~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~ 154 (274)
T COG2503 76 KGKKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPE-TWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKD 154 (274)
T ss_pred cCCCceEEEecchHhhcCccccchhhhcCCCCCcc-chHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchhcccc
Confidence 4566699999999999865211 111111100 000000000144569999999999977544444 4444444 44
Q ss_pred HHHHHHC
Q 013254 345 QLLDILD 351 (447)
Q Consensus 345 ~ILd~LD 351 (447)
.-++-|-
T Consensus 155 ~T~~nLk 161 (274)
T COG2503 155 GTIENLK 161 (274)
T ss_pred hhHHHHH
Confidence 4444443
No 144
>PLN02580 trehalose-phosphatase
Probab=80.93 E-value=3 Score=44.20 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=47.4
Q ss_pred CCCceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCchHHHHHHHHH
Q 013254 271 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDI 349 (447)
Q Consensus 271 ~~kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~YEIvIfTas~~~YA~~ILd~ 349 (447)
..++..|+||.||||+--...+ --+..=|.+.+-|+.|++.+.++|-|--...-.+.++..
T Consensus 116 ~~k~~~LfLDyDGTLaPIv~~P------------------d~A~~s~~~~~aL~~La~~~~VAIVSGR~~~~L~~~l~~ 176 (384)
T PLN02580 116 KGKKIALFLDYDGTLSPIVDDP------------------DRALMSDAMRSAVKNVAKYFPTAIISGRSRDKVYELVGL 176 (384)
T ss_pred hcCCeEEEEecCCccCCCCCCc------------------ccccCCHHHHHHHHHHhhCCCEEEEeCCCHHHHHHHhCC
Confidence 4567899999999997433211 124556899999999999999999999988888877753
No 145
>PLN03017 trehalose-phosphatase
Probab=79.92 E-value=3.3 Score=43.58 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=44.0
Q ss_pred CCCceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCchHHHHHHHH
Q 013254 271 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLD 348 (447)
Q Consensus 271 ~~kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~YEIvIfTas~~~YA~~ILd 348 (447)
..++..|+||+||||+--...+ + ....-|.+.+-|++|++.+.++|-|--...-+..++.
T Consensus 108 ~~k~~llflD~DGTL~Piv~~p----~--------------~a~i~~~~~~aL~~La~~~~vaIvSGR~~~~l~~~~~ 167 (366)
T PLN03017 108 RGKQIVMFLDYDGTLSPIVDDP----D--------------KAFMSSKMRRTVKKLAKCFPTAIVTGRCIDKVYNFVK 167 (366)
T ss_pred cCCCeEEEEecCCcCcCCcCCc----c--------------cccCCHHHHHHHHHHhcCCcEEEEeCCCHHHHHHhhc
Confidence 3467899999999998321110 0 1234588889999999999999999888887777743
No 146
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=79.00 E-value=3.9 Score=41.28 Aligned_cols=61 Identities=20% Similarity=0.161 Sum_probs=45.0
Q ss_pred CCCCceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccE--EEEEcCCchHHHHHHH
Q 013254 270 QGRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFE--VVIFTASQSIYAAQLL 347 (447)
Q Consensus 270 ~~~kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~YE--IvIfTas~~~YA~~IL 347 (447)
...++.+++||.||||++....+.. +..=+++.+.|+.|+..+. ++|.|.-...-.+..+
T Consensus 14 ~~a~~~~~~lDyDGTl~~i~~~p~~------------------a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~ 75 (266)
T COG1877 14 LNARKRLLFLDYDGTLTEIVPHPEA------------------AVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLF 75 (266)
T ss_pred ccccceEEEEeccccccccccCccc------------------cCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhc
Confidence 3456789999999999987544321 3345778888999998887 7777777777777666
Q ss_pred H
Q 013254 348 D 348 (447)
Q Consensus 348 d 348 (447)
.
T Consensus 76 ~ 76 (266)
T COG1877 76 G 76 (266)
T ss_pred C
Confidence 6
No 147
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=78.67 E-value=2.8 Score=43.73 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=44.2
Q ss_pred eEEEeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHH-C------CCCCeeeeEEE
Q 013254 310 TVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDIL-D------PDGKLISRRVY 362 (447)
Q Consensus 310 ~~~V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~L-D------P~~~lf~~rLy 362 (447)
.-||.+-||+.++|+++.+ .+.+.|-|++...|++.+++.+ + ....+|+.++.
T Consensus 180 ~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt 240 (343)
T TIGR02244 180 EKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIV 240 (343)
T ss_pred HHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEe
Confidence 3478889999999999985 5899999999999999999997 5 23567765555
No 148
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=78.31 E-value=5.4 Score=39.39 Aligned_cols=92 Identities=13% Similarity=0.086 Sum_probs=53.3
Q ss_pred CCceEEEEecCccccccccccc----CCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHH
Q 013254 272 RKSVTLVLDLDETLVHSTLEYC----DDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQL 346 (447)
Q Consensus 272 ~kkltLVLDLDeTLVhSs~~~~----~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~I 346 (447)
.++..+|||+|||++....-.. ....|.- ..++.-...---..-|++.+|++++. +.++|++.|.-........
T Consensus 75 dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~-~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T 153 (229)
T TIGR01675 75 DGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDP-TAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNAT 153 (229)
T ss_pred CCCcEEEEccccccccCHHHHHHhccCCCcCCH-HHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHH
Confidence 5788999999999998752110 1111100 00000000001345799999999987 5699999999988775555
Q ss_pred HHHHCCCCCe-eeeEEEcc
Q 013254 347 LDILDPDGKL-ISRRVYRE 364 (447)
Q Consensus 347 Ld~LDP~~~l-f~~rLyRe 364 (447)
.+.|.-.|-. +.+.+.|.
T Consensus 154 ~~nL~~~G~~~~~~LiLR~ 172 (229)
T TIGR01675 154 LDNLINAGFTGWKHLILRG 172 (229)
T ss_pred HHHHHHcCCCCcCeeeecC
Confidence 5555444411 24444564
No 149
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=76.79 E-value=3 Score=38.24 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=58.4
Q ss_pred EEEeeCchHHHHHHHhhcc-cEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEccc-ceeeCCceeecccccCCCCCcEE
Q 013254 311 VYVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRES-CIFSDGTYTKDLTVLGVDLAKVA 388 (447)
Q Consensus 311 ~~V~lRPgl~eFL~~ls~~-YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~-C~~~~g~yiKDLs~LgrdlskVI 388 (447)
..-.+||++.++|++|.+. +.++|.|......|..+.+.+.... ..++... +...+..+.+-+..|+.+.+.|+
T Consensus 124 ~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~----~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~ 199 (215)
T PF00702_consen 124 LRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFD----SIVFARVIGKPEPKIFLRIIKELQVKPGEVA 199 (215)
T ss_dssp EEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCS----EEEEESHETTTHHHHHHHHHHHHTCTGGGEE
T ss_pred ecCcchhhhhhhhhhhhccCcceeeeecccccccccccccccccc----ccccccccccccchhHHHHHHHHhcCCCEEE
Confidence 3456799999999999976 9999999999999999999998743 2222111 11111123444556787888999
Q ss_pred EEECCch
Q 013254 389 IIDNSPQ 395 (447)
Q Consensus 389 IIDDsp~ 395 (447)
.|-|...
T Consensus 200 ~vGDg~n 206 (215)
T PF00702_consen 200 MVGDGVN 206 (215)
T ss_dssp EEESSGG
T ss_pred EEccCHH
Confidence 9998873
No 150
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=75.75 E-value=1.6 Score=39.69 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=13.9
Q ss_pred ceEEEEecCccccccc
Q 013254 274 SVTLVLDLDETLVHST 289 (447)
Q Consensus 274 kltLVLDLDeTLVhSs 289 (447)
...++||+||||+.+.
T Consensus 5 ~~~viFD~DGTLiDs~ 20 (188)
T PRK10725 5 YAGLIFDMDGTILDTE 20 (188)
T ss_pred ceEEEEcCCCcCccCH
Confidence 3578999999999985
No 151
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=74.70 E-value=3.2 Score=40.61 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=43.0
Q ss_pred CCceEEEEecCccccccccc----cc-----CCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc-cEEEEEcCCchH
Q 013254 272 RKSVTLVLDLDETLVHSTLE----YC-----DDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQSI 341 (447)
Q Consensus 272 ~kkltLVLDLDeTLVhSs~~----~~-----~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~-YEIvIfTas~~~ 341 (447)
.++..+|||+||||+..... .. ...+|.-.+ .... -..=|+..+|++++.+. ++|++-|.-...
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv--~~~~----~~aip~a~~l~~~~~~~G~~V~~iT~R~~~ 143 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWV--ASGK----APAIPGALELYNYARSRGVKVFFITGRPES 143 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHH--HCTG----GEEETTHHHHHHHHHHTTEEEEEEEEEETT
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHH--hccc----CcccHHHHHHHHHHHHCCCeEEEEecCCch
Confidence 56889999999999965321 00 111110000 0000 13348899999999955 888888876665
Q ss_pred HHHHHHHHH
Q 013254 342 YAAQLLDIL 350 (447)
Q Consensus 342 YA~~ILd~L 350 (447)
.-+.-++.|
T Consensus 144 ~r~~T~~nL 152 (229)
T PF03767_consen 144 QREATEKNL 152 (229)
T ss_dssp CHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 444444444
No 152
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=74.68 E-value=2.4 Score=39.63 Aligned_cols=80 Identities=24% Similarity=0.355 Sum_probs=42.1
Q ss_pred EeeCchHHHHHHHhhcc-cEEEEEcCCchH-H---HHHHHHHHCCC--CCeeeeEEEcccceeeCCceeecccccCCCCC
Q 013254 313 VKQRPHLKTFLERVAEM-FEVVIFTASQSI-Y---AAQLLDILDPD--GKLISRRVYRESCIFSDGTYTKDLTVLGVDLA 385 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~~-YEIvIfTas~~~-Y---A~~ILd~LDP~--~~lf~~rLyRe~C~~~~g~yiKDLs~Lgrdls 385 (447)
...=||+.+.|++|.+. |++++.|+.... + +..-.+.|+-. +......++..+ |. .++.|
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~~---------K~--~v~~D-- 138 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTGD---------KT--LVGGD-- 138 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEESS---------GG--GC--S--
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEecC---------CC--eEecc--
Confidence 55679999999999977 588877777654 2 22222222211 111222222111 22 23433
Q ss_pred cEEEEECCchhhccCCCceeee
Q 013254 386 KVAIIDNSPQVFRLQVNNGIPI 407 (447)
Q Consensus 386 kVIIIDDsp~~~~~q~eNgIpI 407 (447)
|+|||++.....-...|+++
T Consensus 139 --vlIDD~~~n~~~~~~~g~~~ 158 (191)
T PF06941_consen 139 --VLIDDRPHNLEQFANAGIPV 158 (191)
T ss_dssp --EEEESSSHHHSS-SSESSEE
T ss_pred --EEecCChHHHHhccCCCceE
Confidence 79999999887656667444
No 153
>PRK11587 putative phosphatase; Provisional
Probab=74.00 E-value=1.7 Score=41.03 Aligned_cols=15 Identities=47% Similarity=0.596 Sum_probs=13.5
Q ss_pred eEEEEecCccccccc
Q 013254 275 VTLVLDLDETLVHST 289 (447)
Q Consensus 275 ltLVLDLDeTLVhSs 289 (447)
+.++|||||||+.+.
T Consensus 4 k~viFDlDGTL~Ds~ 18 (218)
T PRK11587 4 KGFLFDLDGTLVDSL 18 (218)
T ss_pred CEEEEcCCCCcCcCH
Confidence 478999999999985
No 154
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=73.90 E-value=5.8 Score=43.69 Aligned_cols=77 Identities=16% Similarity=0.103 Sum_probs=53.8
Q ss_pred EEeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEE
Q 013254 312 YVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAII 390 (447)
Q Consensus 312 ~V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~g~yiKDLs~LgrdlskVIII 390 (447)
.-..||++.++|+++.+ .++++|-|...+.+|+.+++.+.-+ +|.... ...+...++ .+....++++.|
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~--~~~~~~-----p~~K~~~v~---~l~~~~~~v~~V 472 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN--VRAEVL-----PDDKAALIK---ELQEKGRVVAMV 472 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc--EEccCC-----hHHHHHHHH---HHHHcCCEEEEE
Confidence 35679999999999985 5999999999999999999998764 222110 000111222 333456789999
Q ss_pred ECCchhhc
Q 013254 391 DNSPQVFR 398 (447)
Q Consensus 391 DDsp~~~~ 398 (447)
-|...-..
T Consensus 473 GDg~nD~~ 480 (562)
T TIGR01511 473 GDGINDAP 480 (562)
T ss_pred eCCCccHH
Confidence 99876543
No 155
>PRK11590 hypothetical protein; Provisional
Probab=71.66 E-value=2.2 Score=40.42 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=34.6
Q ss_pred EeeCchHHHHH-HHhh-cccEEEEEcCCchHHHHHHHHHHC
Q 013254 313 VKQRPHLKTFL-ERVA-EMFEVVIFTASQSIYAAQLLDILD 351 (447)
Q Consensus 313 V~lRPgl~eFL-~~ls-~~YEIvIfTas~~~YA~~ILd~LD 351 (447)
+..+||+.+.| +.+. +.+.++|-|++...|+++++..+.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 45689999999 5677 589999999999999999999876
No 156
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=71.30 E-value=1.8 Score=40.13 Aligned_cols=14 Identities=36% Similarity=0.648 Sum_probs=12.5
Q ss_pred EEEEecCccccccc
Q 013254 276 TLVLDLDETLVHST 289 (447)
Q Consensus 276 tLVLDLDeTLVhSs 289 (447)
.++|||||||+.+.
T Consensus 2 ~viFD~DGTLiDs~ 15 (197)
T TIGR01548 2 ALVLDMDGVMADVS 15 (197)
T ss_pred ceEEecCceEEech
Confidence 57999999999986
No 157
>PHA02597 30.2 hypothetical protein; Provisional
Probab=71.04 E-value=2.1 Score=39.56 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=12.5
Q ss_pred eEEEEecCcccccc
Q 013254 275 VTLVLDLDETLVHS 288 (447)
Q Consensus 275 ltLVLDLDeTLVhS 288 (447)
+.++|||||||++.
T Consensus 3 k~viFDlDGTLiD~ 16 (197)
T PHA02597 3 PTILTDVDGVLLSW 16 (197)
T ss_pred cEEEEecCCceEch
Confidence 47999999999994
No 158
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=70.70 E-value=2.3 Score=38.87 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=12.4
Q ss_pred EEEEecCccccccc
Q 013254 276 TLVLDLDETLVHST 289 (447)
Q Consensus 276 tLVLDLDeTLVhSs 289 (447)
+++|||||||+.+.
T Consensus 2 ~viFDlDGTL~ds~ 15 (184)
T TIGR01993 2 VWFFDLDNTLYPHS 15 (184)
T ss_pred eEEEeCCCCCCCCc
Confidence 58999999999874
No 159
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=70.52 E-value=2.4 Score=39.74 Aligned_cols=15 Identities=40% Similarity=0.696 Sum_probs=13.5
Q ss_pred eEEEEecCccccccc
Q 013254 275 VTLVLDLDETLVHST 289 (447)
Q Consensus 275 ltLVLDLDeTLVhSs 289 (447)
..++||+||||+++.
T Consensus 4 ~~viFD~DGTL~ds~ 18 (214)
T PRK13288 4 NTVLFDLDGTLINTN 18 (214)
T ss_pred cEEEEeCCCcCccCH
Confidence 488999999999985
No 160
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=69.86 E-value=2.3 Score=42.50 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=14.1
Q ss_pred ceEEEEecCccccccc
Q 013254 274 SVTLVLDLDETLVHST 289 (447)
Q Consensus 274 kltLVLDLDeTLVhSs 289 (447)
...++|||||||+.|.
T Consensus 62 ~k~vIFDlDGTLiDS~ 77 (273)
T PRK13225 62 LQAIIFDFDGTLVDSL 77 (273)
T ss_pred cCEEEECCcCccccCH
Confidence 4588999999999996
No 161
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=69.25 E-value=2.7 Score=39.30 Aligned_cols=15 Identities=33% Similarity=0.731 Sum_probs=13.3
Q ss_pred eEEEEecCccccccc
Q 013254 275 VTLVLDLDETLVHST 289 (447)
Q Consensus 275 ltLVLDLDeTLVhSs 289 (447)
..++|||||||+++.
T Consensus 3 ~~viFDlDGTL~ds~ 17 (221)
T TIGR02253 3 KAIFFDLDDTLIDTS 17 (221)
T ss_pred eEEEEeCCCCCcCCC
Confidence 478999999999975
No 162
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=67.89 E-value=3 Score=40.95 Aligned_cols=92 Identities=17% Similarity=0.127 Sum_probs=69.0
Q ss_pred EEeeCchHHHHHHHhhc-ccEEEEEcCCchHHHHHHHHHHC-CCCCeeeeEEE--cccceee---CCceeecccccCCCC
Q 013254 312 YVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILD-PDGKLISRRVY--RESCIFS---DGTYTKDLTVLGVDL 384 (447)
Q Consensus 312 ~V~lRPgl~eFL~~ls~-~YEIvIfTas~~~YA~~ILd~LD-P~~~lf~~rLy--Re~C~~~---~g~yiKDLs~Lgrdl 384 (447)
.++.=||+..+++.|.. .-.+.++|.+.+..++..++.+. +.. .|++... -..+... ...|.+-+++||..+
T Consensus 90 ~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~-~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~ 168 (222)
T KOG2914|consen 90 NSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFK-NFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPP 168 (222)
T ss_pred ccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHH-hcCCCeecCCccccCCCCCchHHHHHHHhcCCCC
Confidence 37788999999999995 58999999999999988888775 443 5666666 2222211 235788889999888
Q ss_pred -CcEEEEECCchhhccCCCce
Q 013254 385 -AKVAIIDNSPQVFRLQVNNG 404 (447)
Q Consensus 385 -skVIIIDDsp~~~~~q~eNg 404 (447)
+++++++|++........-|
T Consensus 169 ~~k~lVfeds~~Gv~aa~aag 189 (222)
T KOG2914|consen 169 PSKCLVFEDSPVGVQAAKAAG 189 (222)
T ss_pred ccceEEECCCHHHHHHHHhcC
Confidence 99999999997664443333
No 163
>PRK11590 hypothetical protein; Provisional
Probab=67.54 E-value=8.1 Score=36.63 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=13.9
Q ss_pred CceEEEEecCccccccc
Q 013254 273 KSVTLVLDLDETLVHST 289 (447)
Q Consensus 273 kkltLVLDLDeTLVhSs 289 (447)
++++++|||||||++..
T Consensus 5 ~~k~~iFD~DGTL~~~d 21 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD 21 (211)
T ss_pred cceEEEEecCCCCcccc
Confidence 45689999999999653
No 164
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=67.39 E-value=9.8 Score=43.18 Aligned_cols=62 Identities=23% Similarity=0.222 Sum_probs=44.4
Q ss_pred CCCceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc--ccEEEEEcCCchHHHHHHHH
Q 013254 271 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE--MFEVVIFTASQSIYAAQLLD 348 (447)
Q Consensus 271 ~~kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~--~YEIvIfTas~~~YA~~ILd 348 (447)
..++.++++|+||||+-....+. ....-|.+.+.|+.|.+ ...++|.|.-.....++++.
T Consensus 489 ~~~~rLi~~D~DGTL~~~~~~~~------------------~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~ 550 (726)
T PRK14501 489 AASRRLLLLDYDGTLVPFAPDPE------------------LAVPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFG 550 (726)
T ss_pred hccceEEEEecCccccCCCCCcc------------------cCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhC
Confidence 34567999999999995421110 01235788899999997 68899999988887777665
Q ss_pred HH
Q 013254 349 IL 350 (447)
Q Consensus 349 ~L 350 (447)
.+
T Consensus 551 ~~ 552 (726)
T PRK14501 551 DL 552 (726)
T ss_pred CC
Confidence 43
No 165
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=67.36 E-value=2.9 Score=39.20 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=13.2
Q ss_pred eEEEEecCccccccc
Q 013254 275 VTLVLDLDETLVHST 289 (447)
Q Consensus 275 ltLVLDLDeTLVhSs 289 (447)
++++|||||||+.+.
T Consensus 2 k~iiFD~DGTL~ds~ 16 (220)
T TIGR03351 2 SLVVLDMAGTTVDED 16 (220)
T ss_pred cEEEEecCCCeeccC
Confidence 478999999999975
No 166
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=67.07 E-value=2.9 Score=37.81 Aligned_cols=15 Identities=20% Similarity=0.576 Sum_probs=13.3
Q ss_pred eEEEEecCccccccc
Q 013254 275 VTLVLDLDETLVHST 289 (447)
Q Consensus 275 ltLVLDLDeTLVhSs 289 (447)
..++||+||||+.+.
T Consensus 2 ~~iiFD~DGTL~ds~ 16 (185)
T TIGR02009 2 KAVIFDMDGVIVDTA 16 (185)
T ss_pred CeEEEcCCCcccCCh
Confidence 478999999999986
No 167
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=67.07 E-value=8.6 Score=37.74 Aligned_cols=53 Identities=25% Similarity=0.229 Sum_probs=33.5
Q ss_pred ceEEEEecCcccc-cccccccCCCCceEEEEecceeeeEEEeeCchHHHHHH-HhhcccEEEEEcCCchHHHHHHHHHH
Q 013254 274 SVTLVLDLDETLV-HSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLE-RVAEMFEVVIFTASQSIYAAQLLDIL 350 (447)
Q Consensus 274 kltLVLDLDeTLV-hSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~-~ls~~YEIvIfTas~~~YA~~ILd~L 350 (447)
+++|+.||||||+ ... .-+.-+.++|+ ......-+++-|.-+..-+..++...
T Consensus 2 ~~ll~sDlD~Tl~~~~~------------------------~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~ 56 (247)
T PF05116_consen 2 PRLLASDLDGTLIDGDD------------------------EALARLEELLEQQARPEILFVYVTGRSLESVLRLLREY 56 (247)
T ss_dssp SEEEEEETBTTTBHCHH------------------------HHHHHHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHHC
T ss_pred CEEEEEECCCCCcCCCH------------------------HHHHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHhC
Confidence 6799999999999 211 01234555566 33355677777777777777777764
No 168
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=66.42 E-value=2.9 Score=40.02 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=14.0
Q ss_pred ceEEEEecCccccccc
Q 013254 274 SVTLVLDLDETLVHST 289 (447)
Q Consensus 274 kltLVLDLDeTLVhSs 289 (447)
.+.+|||+||||+.+.
T Consensus 12 ~k~viFD~DGTL~Ds~ 27 (229)
T PRK13226 12 PRAVLFDLDGTLLDSA 27 (229)
T ss_pred CCEEEEcCcCccccCH
Confidence 3489999999999986
No 169
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=65.54 E-value=3.6 Score=40.78 Aligned_cols=16 Identities=44% Similarity=0.576 Sum_probs=14.0
Q ss_pred ceEEEEecCccccccc
Q 013254 274 SVTLVLDLDETLVHST 289 (447)
Q Consensus 274 kltLVLDLDeTLVhSs 289 (447)
++.++|||||||+++.
T Consensus 13 ~k~viFDlDGTL~Ds~ 28 (272)
T PRK13223 13 PRLVMFDLDGTLVDSV 28 (272)
T ss_pred CCEEEEcCCCccccCH
Confidence 3499999999999985
No 170
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=65.23 E-value=3.2 Score=38.42 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=12.5
Q ss_pred EEEEecCccccccc
Q 013254 276 TLVLDLDETLVHST 289 (447)
Q Consensus 276 tLVLDLDeTLVhSs 289 (447)
.|+|||||||+.+.
T Consensus 2 ~viFDlDGTL~d~~ 15 (203)
T TIGR02252 2 LITFDAVGTLLALK 15 (203)
T ss_pred eEEEecCCceeeeC
Confidence 68999999999874
No 171
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=65.09 E-value=3.7 Score=39.64 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=13.2
Q ss_pred eEEEEecCccccccc
Q 013254 275 VTLVLDLDETLVHST 289 (447)
Q Consensus 275 ltLVLDLDeTLVhSs 289 (447)
+.++||+||||+.+.
T Consensus 3 k~viFD~DGTLiDs~ 17 (253)
T TIGR01422 3 EAVIFDWAGTTVDFG 17 (253)
T ss_pred eEEEEeCCCCeecCC
Confidence 479999999999974
No 172
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=64.92 E-value=14 Score=35.30 Aligned_cols=38 Identities=13% Similarity=0.038 Sum_probs=33.7
Q ss_pred EeeCchHHHHHH-Hhh-cccEEEEEcCCchHHHHHHHHHH
Q 013254 313 VKQRPHLKTFLE-RVA-EMFEVVIFTASQSIYAAQLLDIL 350 (447)
Q Consensus 313 V~lRPgl~eFL~-~ls-~~YEIvIfTas~~~YA~~ILd~L 350 (447)
+..+||+.+.|+ .+. +.+.++|-|++...|++++++..
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~ 132 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDS 132 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhc
Confidence 357999999995 777 68999999999999999999774
No 173
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=64.57 E-value=3.7 Score=39.92 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=13.5
Q ss_pred eEEEEecCccccccc
Q 013254 275 VTLVLDLDETLVHST 289 (447)
Q Consensus 275 ltLVLDLDeTLVhSs 289 (447)
..++|||||||+.+.
T Consensus 23 k~viFDlDGTLiDs~ 37 (248)
T PLN02770 23 EAVLFDVDGTLCDSD 37 (248)
T ss_pred CEEEEcCCCccCcCH
Confidence 479999999999986
No 174
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=64.44 E-value=3.8 Score=39.53 Aligned_cols=15 Identities=40% Similarity=0.627 Sum_probs=13.2
Q ss_pred eEEEEecCccccccc
Q 013254 275 VTLVLDLDETLVHST 289 (447)
Q Consensus 275 ltLVLDLDeTLVhSs 289 (447)
+.++|||||||+.+.
T Consensus 11 k~iiFDlDGTL~D~~ 25 (238)
T PRK10748 11 SALTFDLDDTLYDNR 25 (238)
T ss_pred eeEEEcCcccccCCh
Confidence 579999999999974
No 175
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=64.28 E-value=3.7 Score=40.20 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=13.4
Q ss_pred eEEEEecCccccccc
Q 013254 275 VTLVLDLDETLVHST 289 (447)
Q Consensus 275 ltLVLDLDeTLVhSs 289 (447)
+.++||+||||+.+.
T Consensus 5 k~vIFDlDGTLiDs~ 19 (267)
T PRK13478 5 QAVIFDWAGTTVDFG 19 (267)
T ss_pred EEEEEcCCCCeecCC
Confidence 589999999999974
No 176
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=64.27 E-value=2.9 Score=36.85 Aligned_cols=14 Identities=43% Similarity=0.776 Sum_probs=12.4
Q ss_pred EEEEecCccccccc
Q 013254 276 TLVLDLDETLVHST 289 (447)
Q Consensus 276 tLVLDLDeTLVhSs 289 (447)
+++||+||||+.+.
T Consensus 1 ~iifD~DGTL~d~~ 14 (154)
T TIGR01549 1 AILFDIDGTLVDSS 14 (154)
T ss_pred CeEecCCCcccccH
Confidence 47899999999985
No 177
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=63.55 E-value=4.4 Score=40.20 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=16.0
Q ss_pred CCCceEEEEecCccccccc
Q 013254 271 GRKSVTLVLDLDETLVHST 289 (447)
Q Consensus 271 ~~kkltLVLDLDeTLVhSs 289 (447)
....+.+||||||||+.|.
T Consensus 21 ~~~~k~vIFDlDGTLvDS~ 39 (260)
T PLN03243 21 GCGWLGVVLEWEGVIVEDD 39 (260)
T ss_pred cCCceEEEEeCCCceeCCc
Confidence 4556789999999999984
No 178
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=62.83 E-value=12 Score=41.01 Aligned_cols=78 Identities=14% Similarity=0.084 Sum_probs=56.0
Q ss_pred EEeeCchHHHHHHHhhc-c-cEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEE
Q 013254 312 YVKQRPHLKTFLERVAE-M-FEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAI 389 (447)
Q Consensus 312 ~V~lRPgl~eFL~~ls~-~-YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~g~yiKDLs~LgrdlskVII 389 (447)
....|||+.+.|+++.+ . +.++|-|...+.+|..+++.++-+. +|... . .....+-+..++....+++.
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~-~f~~~-~-------p~~K~~~v~~l~~~~~~v~~ 452 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDE-VHAEL-L-------PEDKLAIVKELQEEGGVVAM 452 (556)
T ss_pred cccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCe-eeccC-C-------HHHHHHHHHHHHHcCCEEEE
Confidence 35689999999999975 5 8999999999999999999998754 44321 1 00111223334445568999
Q ss_pred EECCchhhc
Q 013254 390 IDNSPQVFR 398 (447)
Q Consensus 390 IDDsp~~~~ 398 (447)
|-|...-..
T Consensus 453 vGDg~nD~~ 461 (556)
T TIGR01525 453 VGDGINDAP 461 (556)
T ss_pred EECChhHHH
Confidence 999986553
No 179
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=62.23 E-value=3.7 Score=37.08 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=12.1
Q ss_pred EEEecCccccccc
Q 013254 277 LVLDLDETLVHST 289 (447)
Q Consensus 277 LVLDLDeTLVhSs 289 (447)
++||+||||+.+.
T Consensus 2 iiFD~DGTL~ds~ 14 (185)
T TIGR01990 2 VIFDLDGVITDTA 14 (185)
T ss_pred eEEcCCCccccCh
Confidence 7999999999986
No 180
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=61.80 E-value=3.2 Score=38.67 Aligned_cols=13 Identities=54% Similarity=0.708 Sum_probs=11.8
Q ss_pred EEEecCccccccc
Q 013254 277 LVLDLDETLVHST 289 (447)
Q Consensus 277 LVLDLDeTLVhSs 289 (447)
+||||||||+.+.
T Consensus 1 iiFDlDGTL~Ds~ 13 (205)
T TIGR01454 1 VVFDLDGVLVDSF 13 (205)
T ss_pred CeecCcCccccCH
Confidence 5899999999985
No 181
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=61.76 E-value=12 Score=35.85 Aligned_cols=13 Identities=38% Similarity=0.641 Sum_probs=11.0
Q ss_pred EEEEecCcccccc
Q 013254 276 TLVLDLDETLVHS 288 (447)
Q Consensus 276 tLVLDLDeTLVhS 288 (447)
++++||||||++.
T Consensus 1 li~~DlDgTLl~~ 13 (236)
T TIGR02471 1 LIITDLDNTLLGD 13 (236)
T ss_pred CeEEeccccccCC
Confidence 3688999999984
No 182
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=60.20 E-value=26 Score=35.01 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=40.7
Q ss_pred ceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCC
Q 013254 274 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDP 352 (447)
Q Consensus 274 kltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP 352 (447)
.+++++|||+|||-.+.+.-+ +...|.++. ..|+|+..|+-++.=-..+-+.|+-
T Consensus 7 ~~lIFtDlD~TLl~~~ye~~p------------------------A~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v 62 (274)
T COG3769 7 PLLIFTDLDGTLLPHSYEWQP------------------------AAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGV 62 (274)
T ss_pred ceEEEEcccCcccCCCCCCCc------------------------cchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Confidence 468889999999974433211 123455555 6699999999888777777788887
Q ss_pred CCC
Q 013254 353 DGK 355 (447)
Q Consensus 353 ~~~ 355 (447)
++.
T Consensus 63 ~~~ 65 (274)
T COG3769 63 QGL 65 (274)
T ss_pred CCC
Confidence 753
No 183
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=60.18 E-value=3.5 Score=38.19 Aligned_cols=13 Identities=54% Similarity=0.802 Sum_probs=11.6
Q ss_pred EEEecCccccccc
Q 013254 277 LVLDLDETLVHST 289 (447)
Q Consensus 277 LVLDLDeTLVhSs 289 (447)
+|||+||||+.+.
T Consensus 1 viFD~DGTL~Ds~ 13 (213)
T TIGR01449 1 VLFDLDGTLVDSA 13 (213)
T ss_pred CeecCCCccccCH
Confidence 5899999999975
No 184
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=59.59 E-value=5 Score=40.21 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=14.6
Q ss_pred CceEEEEecCccccccc
Q 013254 273 KSVTLVLDLDETLVHST 289 (447)
Q Consensus 273 kkltLVLDLDeTLVhSs 289 (447)
+-..+||||||||+.+.
T Consensus 39 ~~k~VIFDlDGTLvDS~ 55 (286)
T PLN02779 39 LPEALLFDCDGVLVETE 55 (286)
T ss_pred CCcEEEEeCceeEEccc
Confidence 34589999999999986
No 185
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=59.54 E-value=5.5 Score=37.61 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=13.9
Q ss_pred ceEEEEecCccccccc
Q 013254 274 SVTLVLDLDETLVHST 289 (447)
Q Consensus 274 kltLVLDLDeTLVhSs 289 (447)
.+.++||+||||+++.
T Consensus 7 ~k~iiFD~DGTL~d~~ 22 (222)
T PRK10826 7 ILAAIFDMDGLLIDSE 22 (222)
T ss_pred CcEEEEcCCCCCCcCH
Confidence 4588999999999884
No 186
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=58.83 E-value=4.7 Score=36.31 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=11.8
Q ss_pred EEEecCccccccc
Q 013254 277 LVLDLDETLVHST 289 (447)
Q Consensus 277 LVLDLDeTLVhSs 289 (447)
|+|||||||+.+.
T Consensus 2 viFD~DGTL~D~~ 14 (175)
T TIGR01493 2 MVFDVYGTLVDVH 14 (175)
T ss_pred eEEecCCcCcccH
Confidence 6899999999975
No 187
>PRK09449 dUMP phosphatase; Provisional
Probab=58.80 E-value=4.9 Score=37.81 Aligned_cols=14 Identities=43% Similarity=0.520 Sum_probs=12.2
Q ss_pred eEEEEecCcccccc
Q 013254 275 VTLVLDLDETLVHS 288 (447)
Q Consensus 275 ltLVLDLDeTLVhS 288 (447)
+.++|||||||++.
T Consensus 4 k~iiFDlDGTLid~ 17 (224)
T PRK09449 4 DWILFDADETLFHF 17 (224)
T ss_pred cEEEEcCCCchhcc
Confidence 47999999999974
No 188
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=58.69 E-value=5 Score=37.03 Aligned_cols=14 Identities=36% Similarity=0.444 Sum_probs=12.6
Q ss_pred EEEEecCccccccc
Q 013254 276 TLVLDLDETLVHST 289 (447)
Q Consensus 276 tLVLDLDeTLVhSs 289 (447)
.++||+||||+++.
T Consensus 3 ~viFD~dgTLiD~~ 16 (198)
T TIGR01428 3 ALVFDVYGTLFDVH 16 (198)
T ss_pred EEEEeCCCcCccHH
Confidence 68999999999975
No 189
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=58.61 E-value=5.8 Score=36.26 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=12.9
Q ss_pred ceEEEEecCcccccc
Q 013254 274 SVTLVLDLDETLVHS 288 (447)
Q Consensus 274 kltLVLDLDeTLVhS 288 (447)
.+++|+|+||||+.+
T Consensus 4 ~k~viFD~DGTLid~ 18 (201)
T TIGR01491 4 IKLIIFDLDGTLTDV 18 (201)
T ss_pred ceEEEEeCCCCCcCC
Confidence 347999999999985
No 190
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=58.54 E-value=5 Score=37.35 Aligned_cols=15 Identities=40% Similarity=0.654 Sum_probs=13.1
Q ss_pred eEEEEecCccccccc
Q 013254 275 VTLVLDLDETLVHST 289 (447)
Q Consensus 275 ltLVLDLDeTLVhSs 289 (447)
+.++||+||||+++.
T Consensus 2 k~viFD~DGTL~d~~ 16 (224)
T TIGR02254 2 KTLLFDLDDTILDFQ 16 (224)
T ss_pred CEEEEcCcCcccccc
Confidence 378999999999975
No 191
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=58.26 E-value=5.6 Score=37.08 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=13.0
Q ss_pred eEEEEecCccccccc
Q 013254 275 VTLVLDLDETLVHST 289 (447)
Q Consensus 275 ltLVLDLDeTLVhSs 289 (447)
+.++|||||||+++.
T Consensus 3 k~viFDldGtL~d~~ 17 (211)
T TIGR02247 3 KAVIFDFGGVLLPSP 17 (211)
T ss_pred eEEEEecCCceecCH
Confidence 379999999999874
No 192
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=57.96 E-value=4.9 Score=34.97 Aligned_cols=13 Identities=46% Similarity=0.828 Sum_probs=11.6
Q ss_pred EEEecCccccccc
Q 013254 277 LVLDLDETLVHST 289 (447)
Q Consensus 277 LVLDLDeTLVhSs 289 (447)
++||+||||+++.
T Consensus 1 iifD~dgtL~d~~ 13 (176)
T PF13419_consen 1 IIFDLDGTLVDTD 13 (176)
T ss_dssp EEEESBTTTEEHH
T ss_pred cEEECCCCcEeCH
Confidence 6899999999875
No 193
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=57.74 E-value=5.2 Score=37.34 Aligned_cols=15 Identities=47% Similarity=0.627 Sum_probs=13.1
Q ss_pred eEEEEecCccccccc
Q 013254 275 VTLVLDLDETLVHST 289 (447)
Q Consensus 275 ltLVLDLDeTLVhSs 289 (447)
..++||+||||+++.
T Consensus 7 ~~iiFD~DGTL~d~~ 21 (226)
T PRK13222 7 RAVAFDLDGTLVDSA 21 (226)
T ss_pred cEEEEcCCcccccCH
Confidence 489999999999874
No 194
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=57.59 E-value=28 Score=32.58 Aligned_cols=81 Identities=20% Similarity=0.303 Sum_probs=50.3
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCchHHH------HHHHHH---HCCCCCeeeeEEEcccceeeCCceeecccccCCC
Q 013254 313 VKQRPHLKTFLERVAEMFEVVIFTASQSIYA------AQLLDI---LDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVD 383 (447)
Q Consensus 313 V~lRPgl~eFL~~ls~~YEIvIfTas~~~YA------~~ILd~---LDP~~~lf~~rLyRe~C~~~~g~yiKDLs~Lgrd 383 (447)
...-||.++.+++|-++|+|+|-||++..|- +.+.+. |++++ .++ |. ..+.+|
T Consensus 67 L~V~p~aq~v~keLt~~y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn-----~vf---Cg--nKnivk-------- 128 (180)
T COG4502 67 LGVQPFAQTVLKELTSIYNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQN-----IVF---CG--NKNIVK-------- 128 (180)
T ss_pred cCccccHHHHHHHHHhhheEEEEEeccCCchhHHHHHHHHHHHCCCCChhh-----EEE---ec--CCCeEE--------
Confidence 5567999999999999999999999954432 223332 23322 222 21 122222
Q ss_pred CCcEEEEECCchhhccCCCceeeeccccCC
Q 013254 384 LAKVAIIDNSPQVFRLQVNNGIPIESWFDD 413 (447)
Q Consensus 384 lskVIIIDDsp~~~~~q~eNgIpI~~~~gd 413 (447)
-=++|||.|........|-|.-..-+.-
T Consensus 129 --aDilIDDnp~nLE~F~G~kIlFdA~HN~ 156 (180)
T COG4502 129 --ADILIDDNPLNLENFKGNKILFDAHHNK 156 (180)
T ss_pred --eeEEecCCchhhhhccCceEEEeccccc
Confidence 1368999998776666666665555443
No 195
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=56.03 E-value=23 Score=36.04 Aligned_cols=81 Identities=12% Similarity=0.138 Sum_probs=47.4
Q ss_pred CceEEEEecCccccccccccc----CCCCceEEEEec-ceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHH
Q 013254 273 KSVTLVLDLDETLVHSTLEYC----DDADFTFTVFFN-MKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQL 346 (447)
Q Consensus 273 kkltLVLDLDeTLVhSs~~~~----~~~df~~~i~~~-~~~~~~~V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~I 346 (447)
++-.+|||+|||++....... ....|.- ..++ .-...--..-=|++.+|++++. ..+.|++.|.-....-+.-
T Consensus 100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~-~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT 178 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFDS-ELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVT 178 (275)
T ss_pred CCCEEEEECccccccCHHHHHHhcCCCCcCCh-hhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHH
Confidence 357999999999996431110 0111110 0000 0000001223589999999997 5699999999887766666
Q ss_pred HHHHCCCC
Q 013254 347 LDILDPDG 354 (447)
Q Consensus 347 Ld~LDP~~ 354 (447)
++.|.-.|
T Consensus 179 ~~NL~kaG 186 (275)
T TIGR01680 179 EANLKKAG 186 (275)
T ss_pred HHHHHHcC
Confidence 66665555
No 196
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=55.27 E-value=5.4 Score=35.69 Aligned_cols=13 Identities=38% Similarity=0.769 Sum_probs=11.9
Q ss_pred EEEecCccccccc
Q 013254 277 LVLDLDETLVHST 289 (447)
Q Consensus 277 LVLDLDeTLVhSs 289 (447)
++|||||||+.+.
T Consensus 2 vlFDlDgtLv~~~ 14 (183)
T TIGR01509 2 ILFDLDGVLVDTS 14 (183)
T ss_pred eeeccCCceechH
Confidence 7899999999985
No 197
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=54.82 E-value=6.8 Score=36.79 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=13.6
Q ss_pred ceEEEEecCccccccc
Q 013254 274 SVTLVLDLDETLVHST 289 (447)
Q Consensus 274 kltLVLDLDeTLVhSs 289 (447)
...++||+||||+.+.
T Consensus 4 ~~~viFD~DGTL~d~~ 19 (221)
T PRK10563 4 IEAVFFDCDGTLVDSE 19 (221)
T ss_pred CCEEEECCCCCCCCCh
Confidence 3488999999999874
No 198
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=53.66 E-value=10 Score=41.43 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=57.8
Q ss_pred EEeeCchHHHHHHHhhc-cc-EEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEE
Q 013254 312 YVKQRPHLKTFLERVAE-MF-EVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAI 389 (447)
Q Consensus 312 ~V~lRPgl~eFL~~ls~-~Y-EIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~g~yiKDLs~LgrdlskVII 389 (447)
.-..||++.+.|++|.+ .+ .++|-|+..+.+|..+++.+...+ +|.... .....+-+..++...+.++.
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~-~f~~~~--------p~~K~~~i~~l~~~~~~v~~ 430 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDE-VHAELL--------PEDKLEIVKELREKYGPVAM 430 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChh-hhhccC--------cHHHHHHHHHHHhcCCEEEE
Confidence 46789999999999985 48 999999999999999999998764 342111 11112234445566688999
Q ss_pred EECCchhhcc
Q 013254 390 IDNSPQVFRL 399 (447)
Q Consensus 390 IDDsp~~~~~ 399 (447)
|-|...-...
T Consensus 431 vGDg~nD~~a 440 (536)
T TIGR01512 431 VGDGINDAPA 440 (536)
T ss_pred EeCCHHHHHH
Confidence 9999865533
No 199
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=52.98 E-value=12 Score=33.67 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=37.5
Q ss_pred eCchHH----HHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCCC-CeeeeEE
Q 013254 315 QRPHLK----TFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDG-KLISRRV 361 (447)
Q Consensus 315 lRPgl~----eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~~-~lf~~rL 361 (447)
++|++. +||+++. +.++++|-|++...+++.+++.+.-.. ..+..++
T Consensus 86 ~~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~ 138 (192)
T PF12710_consen 86 LFPGFIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL 138 (192)
T ss_dssp HCTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE
T ss_pred cCcCchhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEee
Confidence 457777 9999985 789999999999999999999887554 2344555
No 200
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=51.42 E-value=35 Score=31.90 Aligned_cols=63 Identities=17% Similarity=0.233 Sum_probs=40.5
Q ss_pred EEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc-cEEEEEcCCchHHHHHHHHHH
Q 013254 276 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDIL 350 (447)
Q Consensus 276 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~-YEIvIfTas~~~YA~~ILd~L 350 (447)
++|.|+||||--|-... ...+ ..... +.|||+.++..++.+. |.++=-|+-.-..|...-+.|
T Consensus 1 VVvsDIDGTiT~SD~~G-----~i~~----~~G~d---~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L 64 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLG-----HILP----ILGKD---WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWL 64 (157)
T ss_pred CEEEeccCCcCccchhh-----hhhh----ccCch---hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHH
Confidence 36889999998773110 0000 01111 6799999999999954 888777777666665544443
No 201
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=50.19 E-value=24 Score=33.90 Aligned_cols=50 Identities=22% Similarity=0.163 Sum_probs=29.7
Q ss_pred EEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccE--EEEEcCCchHHHHH
Q 013254 278 VLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFE--VVIFTASQSIYAAQ 345 (447)
Q Consensus 278 VLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~YE--IvIfTas~~~YA~~ 345 (447)
+||.||||.-....+ .-...-|++.+.|+.|+.... |+|.|.-...-.+.
T Consensus 1 ~lDyDGTL~p~~~~p------------------~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~ 52 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDP------------------DAAVPPPELRELLRALAADPNNTVAIVSGRSLDDLER 52 (235)
T ss_dssp EEE-TTTSS---S-G------------------GG----HHHHHHHHHHHHHSE--EEEE-SS-HHHHHH
T ss_pred CcccCCccCCCCCCc------------------cccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHH
Confidence 589999998543222 124567999999999998876 77887777766333
No 202
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=49.63 E-value=9.3 Score=36.77 Aligned_cols=15 Identities=40% Similarity=0.658 Sum_probs=13.3
Q ss_pred eEEEEecCccccccc
Q 013254 275 VTLVLDLDETLVHST 289 (447)
Q Consensus 275 ltLVLDLDeTLVhSs 289 (447)
..++||||||||.|.
T Consensus 3 ~avIFD~DGvLvDse 17 (221)
T COG0637 3 KAVIFDMDGTLVDSE 17 (221)
T ss_pred cEEEEcCCCCcCcch
Confidence 468999999999995
No 203
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=47.77 E-value=9.4 Score=37.97 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=63.6
Q ss_pred EEEeeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceee-----CCceeecccccCCCC
Q 013254 311 VYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFS-----DGTYTKDLTVLGVDL 384 (447)
Q Consensus 311 ~~V~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~-----~g~yiKDLs~Lgrdl 384 (447)
.+....|-+ ++|+++. +.+.|.|.|+...++= .++..+.-. .+|++.+. +|... ...|.+=|+++|..+
T Consensus 111 ~~~~~~~~~-~~lq~lR~~g~~l~iisN~d~r~~-~~l~~~~l~-~~fD~vv~--S~e~g~~KPDp~If~~al~~l~v~P 185 (237)
T KOG3085|consen 111 AWKYLDGMQ-ELLQKLRKKGTILGIISNFDDRLR-LLLLPLGLS-AYFDFVVE--SCEVGLEKPDPRIFQLALERLGVKP 185 (237)
T ss_pred CceeccHHH-HHHHHHHhCCeEEEEecCCcHHHH-HHhhccCHH-Hhhhhhhh--hhhhccCCCChHHHHHHHHHhCCCh
Confidence 345556656 9999999 5689999999999887 677776665 47887776 33321 346778889999999
Q ss_pred CcEEEEECCchh-hcc
Q 013254 385 AKVAIIDNSPQV-FRL 399 (447)
Q Consensus 385 skVIIIDDsp~~-~~~ 399 (447)
+.+|.|||.... +..
T Consensus 186 ee~vhIgD~l~nD~~g 201 (237)
T KOG3085|consen 186 EECVHIGDLLENDYEG 201 (237)
T ss_pred HHeEEecCccccccHh
Confidence 999999999977 533
No 204
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=45.06 E-value=37 Score=39.73 Aligned_cols=59 Identities=17% Similarity=0.122 Sum_probs=37.0
Q ss_pred CCceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh--cccEEEEEcCCchHHHHHHHHH
Q 013254 272 RKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA--EMFEVVIFTASQSIYAAQLLDI 349 (447)
Q Consensus 272 ~kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls--~~YEIvIfTas~~~YA~~ILd~ 349 (447)
.++..|+||+||||+..... -+..-|++.+-|++|+ +...++|.|.-...-.+.++..
T Consensus 594 ~~~rlI~LDyDGTLlp~~~~--------------------~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~~ 653 (854)
T PLN02205 594 TTTRAILLDYDGTLMPQASI--------------------DKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFSP 653 (854)
T ss_pred hcCeEEEEecCCcccCCccc--------------------cCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhCC
Confidence 45678999999999954210 0122357777777774 3466667666666665555543
Q ss_pred H
Q 013254 350 L 350 (447)
Q Consensus 350 L 350 (447)
+
T Consensus 654 ~ 654 (854)
T PLN02205 654 C 654 (854)
T ss_pred C
Confidence 3
No 205
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=44.81 E-value=24 Score=35.37 Aligned_cols=102 Identities=19% Similarity=0.292 Sum_probs=56.1
Q ss_pred EEeeCchHHHHHHHhhcc-cEEEEEcCCchHHHHHHHHHHC---CCCCeeeeEEEcccce----eeC---Cceeeccccc
Q 013254 312 YVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILD---PDGKLISRRVYRESCI----FSD---GTYTKDLTVL 380 (447)
Q Consensus 312 ~V~lRPgl~eFL~~ls~~-YEIvIfTas~~~YA~~ILd~LD---P~~~lf~~rLyRe~C~----~~~---g~yiKDLs~L 380 (447)
.+.+|.|+.+|++.|.++ --+.|||||.-.-.+.+|+.-. |.=+.++..+.=+.-. +.. ..|-|+-..+
T Consensus 88 ~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~l 167 (246)
T PF05822_consen 88 DIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESAL 167 (246)
T ss_dssp ---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHHH
T ss_pred chhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCcccc
Confidence 488999999999999965 7999999999999999998863 2223444444322111 111 1233443333
Q ss_pred --------CCCCCcEEEEECCchhhcc-----CCCceeeeccccCCC
Q 013254 381 --------GVDLAKVAIIDNSPQVFRL-----QVNNGIPIESWFDDP 414 (447)
Q Consensus 381 --------grdlskVIIIDDsp~~~~~-----q~eNgIpI~~~~gd~ 414 (447)
-....+||++=|+..-..+ ..+|.|.| .|.++.
T Consensus 168 ~~~~~~~~~~~R~NvlLlGDslgD~~Ma~G~~~~~~~lkI-GFLn~~ 213 (246)
T PF05822_consen 168 EDSPYFKQLKKRTNVLLLGDSLGDLHMADGVPDEENVLKI-GFLNDK 213 (246)
T ss_dssp TTHHHHHCTTT--EEEEEESSSGGGGTTTT-S--SEEEEE-EEE-SS
T ss_pred cCchHHHHhccCCcEEEecCccCChHhhcCCCccccEEEE-EecccC
Confidence 1356889999999965533 33455555 344444
No 206
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=43.69 E-value=43 Score=38.82 Aligned_cols=64 Identities=17% Similarity=0.147 Sum_probs=43.5
Q ss_pred CCCceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc--cEEEEEcCCchHHHHHHHH
Q 013254 271 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM--FEVVIFTASQSIYAAQLLD 348 (447)
Q Consensus 271 ~~kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~--YEIvIfTas~~~YA~~ILd 348 (447)
..++..|+||.||||+.....+. ...-+..-|++.+-|+.|++. -.|+|-|--...-.+.++.
T Consensus 504 ~a~~rll~LDyDGTL~~~~~~~~---------------~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~ 568 (797)
T PLN03063 504 KSNNRLLILGFYGTLTEPRNSQI---------------KEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFG 568 (797)
T ss_pred hccCeEEEEecCccccCCCCCcc---------------ccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhC
Confidence 34567889999999995322110 011244568899999999854 6788888877777777665
Q ss_pred H
Q 013254 349 I 349 (447)
Q Consensus 349 ~ 349 (447)
.
T Consensus 569 ~ 569 (797)
T PLN03063 569 E 569 (797)
T ss_pred C
Confidence 3
No 207
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=43.65 E-value=9.9 Score=40.55 Aligned_cols=15 Identities=33% Similarity=0.643 Sum_probs=13.5
Q ss_pred eEEEEecCccccccc
Q 013254 275 VTLVLDLDETLVHST 289 (447)
Q Consensus 275 ltLVLDLDeTLVhSs 289 (447)
..++|||||||+++.
T Consensus 242 k~vIFDlDGTLiDs~ 256 (459)
T PRK06698 242 QALIFDMDGTLFQTD 256 (459)
T ss_pred hheeEccCCceecch
Confidence 479999999999986
No 208
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=43.19 E-value=11 Score=39.83 Aligned_cols=18 Identities=0% Similarity=0.172 Sum_probs=15.2
Q ss_pred CCceEEEEecCccccccc
Q 013254 272 RKSVTLVLDLDETLVHST 289 (447)
Q Consensus 272 ~kkltLVLDLDeTLVhSs 289 (447)
.+-+.+|||||||||.+.
T Consensus 129 ~~~~~VIFDlDGTLIDS~ 146 (381)
T PLN02575 129 CGWLGAIFEWEGVIIEDN 146 (381)
T ss_pred CCCCEEEEcCcCcceeCH
Confidence 456789999999999875
No 209
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=42.02 E-value=14 Score=35.06 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=13.5
Q ss_pred ceEEEEecCccccccc
Q 013254 274 SVTLVLDLDETLVHST 289 (447)
Q Consensus 274 kltLVLDLDeTLVhSs 289 (447)
+.++++|+||||+...
T Consensus 3 ~~~vifDfDgTi~~~d 18 (219)
T PRK09552 3 SIQIFCDFDGTITNND 18 (219)
T ss_pred CcEEEEcCCCCCCcch
Confidence 4589999999999764
No 210
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=41.39 E-value=15 Score=35.29 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=13.6
Q ss_pred ceEEEEecCccccccc
Q 013254 274 SVTLVLDLDETLVHST 289 (447)
Q Consensus 274 kltLVLDLDeTLVhSs 289 (447)
+.+.++|+||||++.-
T Consensus 5 ~~la~FDfDgTLt~~d 20 (210)
T TIGR01545 5 KRIIFFDLDGTLHQQD 20 (210)
T ss_pred CcEEEEcCCCCCccCc
Confidence 4578999999999973
No 211
>PLN02940 riboflavin kinase
Probab=41.08 E-value=19 Score=37.85 Aligned_cols=16 Identities=38% Similarity=0.630 Sum_probs=13.7
Q ss_pred ceEEEEecCccccccc
Q 013254 274 SVTLVLDLDETLVHST 289 (447)
Q Consensus 274 kltLVLDLDeTLVhSs 289 (447)
-..++|||||||+.+.
T Consensus 11 ik~VIFDlDGTLvDt~ 26 (382)
T PLN02940 11 VSHVILDLDGTLLNTD 26 (382)
T ss_pred CCEEEECCcCcCCcCH
Confidence 4478999999999985
No 212
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=40.44 E-value=17 Score=33.85 Aligned_cols=16 Identities=31% Similarity=0.463 Sum_probs=13.7
Q ss_pred ceEEEEecCccccccc
Q 013254 274 SVTLVLDLDETLVHST 289 (447)
Q Consensus 274 kltLVLDLDeTLVhSs 289 (447)
.+.++||+||||++..
T Consensus 4 ~k~i~FD~d~TL~d~~ 19 (229)
T COG1011 4 IKAILFDLDGTLLDFD 19 (229)
T ss_pred eeEEEEecCCcccccc
Confidence 4588999999999974
No 213
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=39.59 E-value=16 Score=33.93 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=12.4
Q ss_pred EEEEecCccccccc
Q 013254 276 TLVLDLDETLVHST 289 (447)
Q Consensus 276 tLVLDLDeTLVhSs 289 (447)
++||||||||++..
T Consensus 2 ~viFDldgvL~d~~ 15 (199)
T PRK09456 2 LYIFDLGNVIVDID 15 (199)
T ss_pred EEEEeCCCccccCc
Confidence 68999999999874
No 214
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=37.82 E-value=75 Score=29.07 Aligned_cols=73 Identities=22% Similarity=0.276 Sum_probs=47.3
Q ss_pred EEEecceeeeEEEeeCchHHHHHHHhhcc-cEEEEEcCCchH-HHHHHHHHHCCCCCeeeeEEEcccceeeCCceeeccc
Q 013254 301 TVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQSI-YAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLT 378 (447)
Q Consensus 301 ~i~~~~~~~~~~V~lRPgl~eFL~~ls~~-YEIvIfTas~~~-YA~~ILd~LDP~~~lf~~rLyRe~C~~~~g~yiKDLs 378 (447)
.+.+.|++ ..++.+.++++.+.+. +.+.|+|.+... --+.++..+|- ...|.|+++|.
T Consensus 64 gVt~SGGE-----l~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~~iD~---------------l~~g~y~~~~~ 123 (147)
T TIGR02826 64 CVLFLGGE-----WNREALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQHLDY---------------LKTGRWIHTRG 123 (147)
T ss_pred EEEEechh-----cCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHhCCE---------------EEEChHHHHcC
Confidence 35556666 3678999999999864 899999986542 23344554442 24566666666
Q ss_pred ccCCCCCcEEEEECC
Q 013254 379 VLGVDLAKVAIIDNS 393 (447)
Q Consensus 379 ~LgrdlskVIIIDDs 393 (447)
.+++.-+|=.|+|-.
T Consensus 124 ~~~~~~sNQ~~~~~~ 138 (147)
T TIGR02826 124 GLGSPTTNQIFIDLR 138 (147)
T ss_pred CCCCCCcCceEEECC
Confidence 555545677777743
No 215
>PLN02382 probable sucrose-phosphatase
Probab=37.68 E-value=20 Score=38.21 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=14.3
Q ss_pred CCceEEEEecCcccccc
Q 013254 272 RKSVTLVLDLDETLVHS 288 (447)
Q Consensus 272 ~kkltLVLDLDeTLVhS 288 (447)
.+++.|+.||||||+..
T Consensus 7 ~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 7 SPRLMIVSDLDHTMVDH 23 (413)
T ss_pred CCCEEEEEcCCCcCcCC
Confidence 45789999999999964
No 216
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=36.88 E-value=50 Score=35.36 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=38.2
Q ss_pred CceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCc
Q 013254 273 KSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQ 339 (447)
Q Consensus 273 kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~YEIvIfTas~ 339 (447)
..+...||+|+|||...... .+......|.+..++.-..+=..-.+.|-++|||...
T Consensus 74 ~~K~i~FD~dgtlI~t~sg~----------vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~ 130 (422)
T KOG2134|consen 74 GSKIIMFDYDGTLIDTKSGK----------VFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQN 130 (422)
T ss_pred CcceEEEecCCceeecCCcc----------eeeccCccceeeccccchhhhhhccCCeEEEEEeccc
Confidence 34577899999999874321 2233344566666666666555555789999999765
No 217
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=35.88 E-value=1e+02 Score=28.59 Aligned_cols=66 Identities=26% Similarity=0.329 Sum_probs=34.6
Q ss_pred eCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEECC
Q 013254 315 QRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNS 393 (447)
Q Consensus 315 lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~g~yiKDLs~LgrdlskVIIIDDs 393 (447)
.|=.+.+||+.+. +.-.|++|-|+.+.- .+|+.++...+++ ..++|++
T Consensus 53 ~~~~l~~~L~~~~~~gk~I~~yGA~~kg~--tlln~~g~~~~~I-----------------------------~~vvD~n 101 (160)
T PF08484_consen 53 SKAELREFLEKLKAEGKRIAGYGAGAKGN--TLLNYFGLDNDLI-----------------------------DYVVDDN 101 (160)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE---SHHH--HHHHHHT--TTTS-------------------------------EEES-
T ss_pred HHHHHHHHHHHHHHcCCEEEEECcchHHH--HHHHHhCCCccee-----------------------------EEEEeCC
Confidence 3455777887776 456699999987754 4577777655444 2367777
Q ss_pred chhh-ccCCCceeeecccc
Q 013254 394 PQVF-RLQVNNGIPIESWF 411 (447)
Q Consensus 394 p~~~-~~q~eNgIpI~~~~ 411 (447)
|... .+-|..+|||.+..
T Consensus 102 p~K~G~~~PGt~ipI~~p~ 120 (160)
T PF08484_consen 102 PLKQGKYLPGTHIPIVSPE 120 (160)
T ss_dssp GGGTTEE-TTT--EEEEGG
T ss_pred hhhcCcccCCCCCeECCHH
Confidence 7666 34566677776654
No 218
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=35.53 E-value=69 Score=37.95 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=47.8
Q ss_pred CCCceEEEEecCcccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc--cEEEEEcCCchHHHHHHHH
Q 013254 271 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM--FEVVIFTASQSIYAAQLLD 348 (447)
Q Consensus 271 ~~kkltLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~lRPgl~eFL~~ls~~--YEIvIfTas~~~YA~~ILd 348 (447)
..++..|+||.||||+-....+...... ...+.+..-|.+.+.|+.|++. ..|+|-|--...-.+.++.
T Consensus 588 ~a~~RLlfLDyDGTLap~~~~P~~~~~~---------~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg 658 (934)
T PLN03064 588 QSNNRLLILGFNATLTEPVDTPGRRGDQ---------IKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFG 658 (934)
T ss_pred hccceEEEEecCceeccCCCCccccccc---------ccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhC
Confidence 3456789999999998653222100000 0011244558899999999954 7899999998888888775
Q ss_pred HH
Q 013254 349 IL 350 (447)
Q Consensus 349 ~L 350 (447)
.+
T Consensus 659 ~~ 660 (934)
T PLN03064 659 EF 660 (934)
T ss_pred CC
Confidence 54
No 219
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=34.14 E-value=68 Score=34.82 Aligned_cols=53 Identities=23% Similarity=0.380 Sum_probs=41.2
Q ss_pred eEEEeeCchHHHHHHHhhccc-EEEEEcCCchHHHHHHHHHH-CC-------CCCeeeeEEE
Q 013254 310 TVYVKQRPHLKTFLERVAEMF-EVVIFTASQSIYAAQLLDIL-DP-------DGKLISRRVY 362 (447)
Q Consensus 310 ~~~V~lRPgl~eFL~~ls~~Y-EIvIfTas~~~YA~~ILd~L-DP-------~~~lf~~rLy 362 (447)
.-||.+-|.+..+|+++.+.- .+.+-|+|...|++.+++.+ ++ +..||+-++.
T Consensus 179 ~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv 240 (448)
T PF05761_consen 179 EKYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIV 240 (448)
T ss_dssp CCCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEE
T ss_pred HHHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEE
Confidence 346788999999999999775 89999999999999999986 44 5678877776
No 220
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=33.04 E-value=35 Score=37.47 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=19.3
Q ss_pred EEEEEcCCchHHHHHHHHH-HCCC
Q 013254 331 EVVIFTASQSIYAAQLLDI-LDPD 353 (447)
Q Consensus 331 EIvIfTas~~~YA~~ILd~-LDP~ 353 (447)
+.+|-||+.+.|++++++. |+-+
T Consensus 124 ~~vvVSASp~~~Vepfa~~~LGid 147 (497)
T PLN02177 124 KRYIITASPRIMVEPFVKTFLGAD 147 (497)
T ss_pred CEEEEECCcHHHHHHHHHHcCCCC
Confidence 4599999999999999975 6554
No 221
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=32.24 E-value=1.1e+02 Score=33.16 Aligned_cols=83 Identities=22% Similarity=0.357 Sum_probs=45.6
Q ss_pred CceEEEEecCcccc--cccccccC------CCCceEEEEe-cceeeeEEEeeCch-------HHHHHHHhhccc-----E
Q 013254 273 KSVTLVLDLDETLV--HSTLEYCD------DADFTFTVFF-NMKEHTVYVKQRPH-------LKTFLERVAEMF-----E 331 (447)
Q Consensus 273 kkltLVLDLDeTLV--hSs~~~~~------~~df~~~i~~-~~~~~~~~V~lRPg-------l~eFL~~ls~~Y-----E 331 (447)
.+.-+|||+|.|.. |...+... ...|.--+.+ ...+.-+...+||| ..+||+.+-+.+ +
T Consensus 138 ~~~~i~LDiD~T~~~~~G~Qe~~~~n~y~g~~gY~PL~~f~g~~G~~l~a~LRpGn~~sa~g~~~fL~~~l~~lr~~~~~ 217 (448)
T PF13701_consen 138 PPKEIVLDIDSTVDDVHGEQEGAVFNTYYGEDGYHPLVAFDGQTGYLLAAELRPGNVHSAKGAAEFLKRVLRRLRQRWPD 217 (448)
T ss_pred ccceEEEecccccccchhhcccccccccCCCcccccceeccCCCCceEEEEccCCCCChHHHHHHHHHHHHHHHhhhCcc
Confidence 34578999999974 33322111 1112211122 22344566889998 667777665433 2
Q ss_pred E-EEEcCCchHHHHHHHHHHCCCCC
Q 013254 332 V-VIFTASQSIYAAQLLDILDPDGK 355 (447)
Q Consensus 332 I-vIfTas~~~YA~~ILd~LDP~~~ 355 (447)
. +++=+-+--+...+++.++-.|.
T Consensus 218 ~~ILvR~DSgF~~~el~~~ce~~g~ 242 (448)
T PF13701_consen 218 TRILVRGDSGFASPELMDWCEAEGV 242 (448)
T ss_pred ceEEEEecCccCcHHHHHHHHhCCC
Confidence 2 34444444566677777776663
No 222
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=30.68 E-value=23 Score=31.57 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=11.0
Q ss_pred EEEecCccccccc
Q 013254 277 LVLDLDETLVHST 289 (447)
Q Consensus 277 LVLDLDeTLVhSs 289 (447)
+|+|+||||+...
T Consensus 2 ~~fD~DgTl~~~~ 14 (177)
T TIGR01488 2 AIFDFDGTLTRQD 14 (177)
T ss_pred EEecCccccccch
Confidence 6899999999753
No 223
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=29.29 E-value=30 Score=31.21 Aligned_cols=13 Identities=38% Similarity=0.682 Sum_probs=11.3
Q ss_pred EEEecCccccccc
Q 013254 277 LVLDLDETLVHST 289 (447)
Q Consensus 277 LVLDLDeTLVhSs 289 (447)
+++|+||||+...
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 5899999999875
No 224
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=27.90 E-value=29 Score=31.87 Aligned_cols=12 Identities=33% Similarity=0.481 Sum_probs=10.8
Q ss_pred EEEecCcccccc
Q 013254 277 LVLDLDETLVHS 288 (447)
Q Consensus 277 LVLDLDeTLVhS 288 (447)
.++|+||||+..
T Consensus 2 a~FD~DgTL~~~ 13 (202)
T TIGR01490 2 AFFDFDGTLTAK 13 (202)
T ss_pred eEEccCCCCCCC
Confidence 589999999985
No 225
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=25.14 E-value=1.1e+02 Score=25.83 Aligned_cols=15 Identities=53% Similarity=0.574 Sum_probs=13.3
Q ss_pred ceEEEEecCcccccc
Q 013254 274 SVTLVLDLDETLVHS 288 (447)
Q Consensus 274 kltLVLDLDeTLVhS 288 (447)
..+|||+=|||.|.+
T Consensus 39 ~~~lvLeeDGT~Vd~ 53 (81)
T cd06537 39 VLTLVLEEDGTAVDS 53 (81)
T ss_pred ceEEEEecCCCEEcc
Confidence 479999999999976
No 226
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=23.63 E-value=1.2e+02 Score=25.38 Aligned_cols=15 Identities=53% Similarity=0.636 Sum_probs=13.3
Q ss_pred ceEEEEecCcccccc
Q 013254 274 SVTLVLDLDETLVHS 288 (447)
Q Consensus 274 kltLVLDLDeTLVhS 288 (447)
..+|||+=|||.|.+
T Consensus 40 ~~~lvL~eDGT~Vd~ 54 (78)
T cd06539 40 LVTLVLEEDGTVVDT 54 (78)
T ss_pred CcEEEEeCCCCEEcc
Confidence 579999999999976
No 227
>PRK10671 copA copper exporting ATPase; Provisional
Probab=22.76 E-value=69 Score=37.05 Aligned_cols=77 Identities=14% Similarity=0.145 Sum_probs=54.9
Q ss_pred eeCchHHHHHHHhh-cccEEEEEcCCchHHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeecccccCCCCCcEEEEEC
Q 013254 314 KQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDN 392 (447)
Q Consensus 314 ~lRPgl~eFL~~ls-~~YEIvIfTas~~~YA~~ILd~LDP~~~lf~~rLyRe~C~~~~g~yiKDLs~LgrdlskVIIIDD 392 (447)
..||++.+.|+++. +.+.+++.|...+..|+.+++.++-.. +|.... +....+-++.++....+++.|-|
T Consensus 650 ~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~-~~~~~~--------p~~K~~~i~~l~~~~~~v~~vGD 720 (834)
T PRK10671 650 PLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDE-VIAGVL--------PDGKAEAIKRLQSQGRQVAMVGD 720 (834)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCE-EEeCCC--------HHHHHHHHHHHhhcCCEEEEEeC
Confidence 45999999999997 459999999999999999999988753 332211 11112233344555678999999
Q ss_pred Cchhhcc
Q 013254 393 SPQVFRL 399 (447)
Q Consensus 393 sp~~~~~ 399 (447)
...-...
T Consensus 721 g~nD~~a 727 (834)
T PRK10671 721 GINDAPA 727 (834)
T ss_pred CHHHHHH
Confidence 9865533
No 228
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=22.42 E-value=50 Score=39.52 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=14.9
Q ss_pred CCceEEEEecCccccccc
Q 013254 272 RKSVTLVLDLDETLVHST 289 (447)
Q Consensus 272 ~kkltLVLDLDeTLVhSs 289 (447)
.+-..++|||||||+++.
T Consensus 73 ~~ikaVIFDlDGTLiDS~ 90 (1057)
T PLN02919 73 GKVSAVLFDMDGVLCNSE 90 (1057)
T ss_pred CCCCEEEECCCCCeEeCh
Confidence 344579999999999986
No 229
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=20.99 E-value=1.3e+02 Score=24.88 Aligned_cols=15 Identities=53% Similarity=0.691 Sum_probs=13.3
Q ss_pred ceEEEEecCcccccc
Q 013254 274 SVTLVLDLDETLVHS 288 (447)
Q Consensus 274 kltLVLDLDeTLVhS 288 (447)
..+|||+=|||.|..
T Consensus 38 ~~~l~L~eDGT~Vdd 52 (74)
T smart00266 38 PVTLVLEEDGTIVDD 52 (74)
T ss_pred CcEEEEecCCcEEcc
Confidence 579999999999976
No 230
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=20.98 E-value=1.5e+02 Score=24.99 Aligned_cols=16 Identities=44% Similarity=0.571 Sum_probs=13.8
Q ss_pred CceEEEEecCcccccc
Q 013254 273 KSVTLVLDLDETLVHS 288 (447)
Q Consensus 273 kkltLVLDLDeTLVhS 288 (447)
...+|||+-|||.|..
T Consensus 41 ~~~~lvL~eDGT~Vdd 56 (80)
T cd06536 41 APITLVLAEDGTIVED 56 (80)
T ss_pred CceEEEEecCCcEEcc
Confidence 4579999999999976
No 231
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=20.59 E-value=1.3e+02 Score=25.17 Aligned_cols=15 Identities=47% Similarity=0.430 Sum_probs=13.2
Q ss_pred ceEEEEecCcccccc
Q 013254 274 SVTLVLDLDETLVHS 288 (447)
Q Consensus 274 kltLVLDLDeTLVhS 288 (447)
..+|||+-|||.|..
T Consensus 39 ~~~lvL~eDGT~Vd~ 53 (79)
T cd06538 39 ISSLVLDEDGTGVDT 53 (79)
T ss_pred ccEEEEecCCcEEcc
Confidence 379999999999976
No 232
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=20.08 E-value=1.5e+02 Score=24.85 Aligned_cols=16 Identities=50% Similarity=0.524 Sum_probs=13.8
Q ss_pred CceEEEEecCcccccc
Q 013254 273 KSVTLVLDLDETLVHS 288 (447)
Q Consensus 273 kkltLVLDLDeTLVhS 288 (447)
...+|||+-|||.|..
T Consensus 39 ~~~~lvL~eDGTeVdd 54 (78)
T cd01615 39 APVTLVLEEDGTEVDD 54 (78)
T ss_pred CCeEEEEeCCCcEEcc
Confidence 4579999999999965
Done!