BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013256
(447 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D554|SF3A3_MOUSE Splicing factor 3A subunit 3 OS=Mus musculus GN=Sf3a3 PE=2 SV=2
Length = 501
Score = 296 bits (758), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 183/428 (42%), Positives = 260/428 (60%), Gaps = 25/428 (5%)
Query: 4 TLLEVTRAAHEEVERLERLVVKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIEIYA 63
T+LE R HEE ERL ++ K++ T+ ++ +D++ HR R M D + + L ++Y
Sbjct: 3 TILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYD 62
Query: 64 DKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENLLK- 122
DKD RK+E+ A+ +G N F+ FY+RLK+I+E+HR+HP+ + V S ++E LLK
Sbjct: 63 DKDGLRKEELNAI-----SGPNEFAEFYNRLKQIKEFHRKHPN-EICVPMSVEFEELLKA 116
Query: 123 -EEP------LVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRK 175
E P LVEF+ EE YGRYLDLH+ Y +YIN K ++++Y YL +F + +IP++
Sbjct: 117 RENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKE 176
Query: 176 LKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQE 235
K +Y+ Y+E LLEYL + R +PLQD + +F K+ DFE++W T GW E
Sbjct: 177 RK-NAEYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQTDFEKKWDNGTFPGWPKETSS 235
Query: 236 NGHVPAQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPL 295
H LDL +S+ EEL +G +RLK L A GLK GGTL++RA+RLF TK L
Sbjct: 236 ALTHAGAH--LDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSL 293
Query: 296 DKLDKKHFAKGARGKEQNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQK 355
+ LD FAK + K G T+ KDIA +EA++ + ++L E + T +NVQ+
Sbjct: 294 ESLDTSLFAKNPKSK---GTKRDTERN---KDIAFLEAQIYEYVEILGEQRQLTHENVQR 347
Query: 356 KQALTYEEMEAEREEQEETQVDTESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQV 415
KQA T E E EE+E+ D+E + IYNP LP+GWDGKPIPYWLYKLHGL
Sbjct: 348 KQART--GEEREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNIN 405
Query: 416 FSSLNCYN 423
++ C N
Sbjct: 406 YNCEICGN 413
>sp|Q12874|SF3A3_HUMAN Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1
Length = 501
Score = 295 bits (755), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 183/428 (42%), Positives = 260/428 (60%), Gaps = 25/428 (5%)
Query: 4 TLLEVTRAAHEEVERLERLVVKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIEIYA 63
T+LE R HEE ERL ++ K++ T+ ++ +D++ HR R M D + + L ++Y
Sbjct: 3 TILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYD 62
Query: 64 DKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENLLK- 122
DKD RK+E+ A+ +G N F+ FY+RLK+I+E+HR+HP+ + V S ++E LLK
Sbjct: 63 DKDGLRKEELNAI-----SGPNEFAEFYNRLKQIKEFHRKHPN-EICVPMSVEFEELLKA 116
Query: 123 -EEP------LVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRK 175
E P LVEF+ EE YGRYLDLH+ Y +YIN K ++++Y YL +F + +IP++
Sbjct: 117 RENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKE 176
Query: 176 LKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQE 235
K +Y+ Y+E LLEYL + R +PLQD + +F K+ A+FE++W T GW E
Sbjct: 177 RK-NAEYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQAEFEKKWENGTFPGWPKETSS 235
Query: 236 NGHVPAQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPL 295
H LDL +S+ EEL +G +RLK L A GLK GGTL++RA+RLF TK L
Sbjct: 236 ALTHAGAH--LDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSL 293
Query: 296 DKLDKKHFAKGARGKEQNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQK 355
+ LD FAK + K G T+ KDIA +EA++ + ++L E T +NVQ+
Sbjct: 294 ESLDTSLFAKNPKSK---GTKRDTERN---KDIAFLEAQIYEYVEILGEQRHLTHENVQR 347
Query: 356 KQALTYEEMEAEREEQEETQVDTESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQV 415
KQA T E E EE+E+ D+E + IYNP LP+GWDGKPIPYWLYKLHGL
Sbjct: 348 KQART--GEEREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNIN 405
Query: 416 FSSLNCYN 423
++ C N
Sbjct: 406 YNCEICGN 413
>sp|O46106|NOI_DROME Splicing factor 3A subunit 3 OS=Drosophila melanogaster GN=noi PE=1
SV=1
Length = 503
Score = 275 bits (702), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 175/428 (40%), Positives = 252/428 (58%), Gaps = 21/428 (4%)
Query: 4 TLLEVTRAAHEEVERLERLVVKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIEIYA 63
TLLE R HEE ERL +L+V + T+ K+R+ HR++ +++ ++T +L ++Y
Sbjct: 3 TLLEQQRRLHEERERLVKLMVDEHATKKPGEKERIHSEHRLKYLMELHHNSTSQLRDLYE 62
Query: 64 DKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENLLK- 122
DKDN RK EIAAL +G N F+ FY RLK+I+++++ HP A V+V S +++ +++
Sbjct: 63 DKDNERKAEIAAL-----SGPNEFNEFYARLKQIKQFYKSHP-AEVSVPLSVEFDEMIRV 116
Query: 123 ------EEPLVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRKL 176
LVEF+ EE GRYLDL+E Y Y+N + ++++Y YL F +IPR+
Sbjct: 117 YNNPDDMSALVEFTDEEGGGRYLDLNECYELYLNLRSVEKLDYITYLMSFDHVFDIPRER 176
Query: 177 KMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQEN 236
K R+YR YIE L +YL +F R +PL DL+ KV DF+ QW+ T G+ + E+
Sbjct: 177 K-NREYRIYIETLNDYLHHFILRIQPLLDLEGELLKVELDFQRQWLMGTFPGFSIKETES 235
Query: 237 GHVPAQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLD 296
+ + LDL +S+ EEL +G +RLK L A GLK GGTL++RA+RLF TK
Sbjct: 236 A-LANTGAHLDLSAFSSWEELASLGLDRLKSALVALGLKCGGTLEERAQRLFSTKGK--S 292
Query: 297 KLDKKHFAKGARGKEQNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQKK 356
LD AK K + ++E K+IA +EA + K DLLSE T +NVQ+K
Sbjct: 293 TLDPALMAKKPSAK---TASAQSREHERHKEIAQLEALLYKYADLLSEQRAATKENVQRK 349
Query: 357 QALTYEEMEAEREEQEETQVDTESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQVF 416
QA T E + E E+ + + D ++ YNP LP+GWDGKPIPYWLYKLHGL +
Sbjct: 350 QARTGGERDDSDVEASESDNEDDPDADDVP-YNPKNLPLGWDGKPIPYWLYKLHGLNISY 408
Query: 417 SSLNCYNL 424
+ C N
Sbjct: 409 NCEICGNF 416
>sp|O59706|SAP61_SCHPO Pre-mRNA-splicing factor sap61 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sap61 PE=1 SV=1
Length = 492
Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 138/444 (31%), Positives = 219/444 (49%), Gaps = 57/444 (12%)
Query: 1 MSSTLLEVTRAAHEEVERLERLVVKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIE 60
MS ++LE R AHEE+ERL++ +V P + ++RL H+ ++ +T+++L+
Sbjct: 1 MSESVLETERYAHEELERLQQAIVDRQVANPKAPRERLRLEHQSAQFLNQFRETSKKLLV 60
Query: 61 IYADKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENL 120
+ D + E+A + + + FY L EI+E+H+++P +V D S+ Y ++
Sbjct: 61 SHESSDRLKDQEVARINAD-----DDLTEFYKSLGEIQEFHKKYPDHKVE-DLSQLY-SI 113
Query: 121 LKEEPLVE-----FSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRK 175
+P ++ F GEE YGR++DL+E Y +YIN + I Y YL +IP+
Sbjct: 114 KPSQPGIDEIDTLFRGEEMYGRFMDLNECYEEYINLSNVQHISYLEYLKNLEDFDQIPKP 173
Query: 176 LKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQE 235
K + Y YI L EYL+ F++RT PL +LD+I + +F+ W + L GW + E
Sbjct: 174 EK-NQTYINYITHLYEYLVSFYRRTHPLSNLDKIIAVFDTEFDAAW-EAGLPGWYSHNAE 231
Query: 236 NGHVPAQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPL 295
A+ D ST EV + + + K + +R+ + +
Sbjct: 232 -----AEKDGKD----STEAFYCEVCQKFFGKITVFEAHKKSKAHNKAVKRMQSSSPSTT 282
Query: 296 DKLDKKHFAKGARGKEQNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQK 355
++K KG + IA +E +KKL LL + + T +NV +
Sbjct: 283 SNTNEKQ--KGPKA------------------IARIEFLIKKLTSLLDDVRKDTRENVVR 322
Query: 356 KQALTYEE-------MEAEREEQEETQVDTESD-------DEEQQIYNPLKLPMGWDGKP 401
+Q LT E E E EQ V E + D+E++IYNPLKLP+GWDGKP
Sbjct: 323 RQTLTAAERLAEVEAAEREAFEQSTPSVSVEGNQDEESDQDDEEKIYNPLKLPLGWDGKP 382
Query: 402 IPYWLYKLHGLGQVFSSLNCYNLL 425
IP+WL+KLHGLG+ F C N +
Sbjct: 383 IPFWLWKLHGLGKEFPCEICGNYV 406
>sp|Q7T293|SDE2_DANRE Protein SDE2 homolog OS=Danio rerio GN=sde2 PE=2 SV=2
Length = 467
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 44/67 (65%)
Query: 246 LDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAK 305
LDL S E+L +G ERLK+EL +G+K GGTLQ+RA RLF K D++D AK
Sbjct: 401 LDLLSVSGPEQLEALGLERLKKELMERGMKCGGTLQERAARLFSVKGLTPDQIDPSLLAK 460
Query: 306 GARGKEQ 312
++GK++
Sbjct: 461 PSKGKKK 467
>sp|Q8K1J5|SDE2_MOUSE Protein SDE2 homolog OS=Mus musculus GN=Sde2 PE=1 SV=1
Length = 448
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%)
Query: 232 EGQENGHVPAQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTK 291
EG +G +DL +S+ EL +G ERLK EL GLK GGTLQ+RA RLF +
Sbjct: 368 EGNNSGDTALGLEAVDLSAFSSAAELESLGLERLKCELMVLGLKCGGTLQERAARLFSVR 427
Query: 292 HTPLDKLDKKHFAKGARGKEQ 312
+ +D FAK ++GK++
Sbjct: 428 GLTKELIDPALFAKPSKGKKK 448
>sp|P19736|PRP9_YEAST Pre-mRNA-splicing factor PRP9 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRP9 PE=1 SV=1
Length = 530
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 326 KDIALMEAKMKKLCDLLSETIERTIQNVQKKQALTYEEMEAE---------------REE 370
++ E K+ + L++ RT V++K A T E AE E+
Sbjct: 312 RNFVYSEYKLHRYLKYLNDEFSRTRSFVERKLAFTANERMAEMDILTQKYEAPAYDSTEK 371
Query: 371 QEETQVDTESDD----EEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQVFSSLNCYN 423
+ QVD E D EE +P+G DG P+PYWLYKLHGL + + C N
Sbjct: 372 EGAEQVDGEQRDGQLQEEHLSGKSFDMPLGPDGLPMPYWLYKLHGLDREYRCEICSN 428
>sp|Q07G43|SDE2_XENTR Protein SDE2 homolog OS=Xenopus tropicalis GN=sde2 PE=2 SV=1
Length = 468
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 241 AQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDK 300
A+ S +DL + T EL +G E+LK EL A LK GGTLQ+RA RLF + P D++D
Sbjct: 397 AETSPIDLLAFKTAAELEALGLEKLKLELGALALKCGGTLQERAARLFSVRGLPRDQIDP 456
Query: 301 KHFAKGARGKEQ 312
FAK A+GK++
Sbjct: 457 SLFAKPAKGKKK 468
>sp|Q5BJN8|SDE2_RAT Protein SDE2 homolog OS=Rattus norvegicus GN=Sde2 PE=2 SV=2
Length = 448
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 46/81 (56%)
Query: 232 EGQENGHVPAQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTK 291
EG +G LDL +S EL +G ERLK L A GLK GGTLQ+RA RLF +
Sbjct: 368 EGSNSGDTALGVEALDLSAFSCAAELELLGLERLKCALMALGLKCGGTLQERAARLFSVR 427
Query: 292 HTPLDKLDKKHFAKGARGKEQ 312
+ +D FAK ++GK++
Sbjct: 428 GLSKELIDPTLFAKPSKGKKK 448
>sp|Q6IQ49|SDE2_HUMAN Protein SDE2 homolog OS=Homo sapiens GN=SDE2 PE=1 SV=1
Length = 451
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 246 LDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAK 305
+DL +++V EL +G E+LK EL A GLK GGTLQ+RA RLF + +++D FAK
Sbjct: 385 IDLLAFTSVAELELLGLEKLKCELMALGLKCGGTLQERAARLFSVRGLAKEQIDPALFAK 444
Query: 306 GARGKEQ 312
+GK++
Sbjct: 445 PLKGKKK 451
>sp|Q5RET9|SDE2_PONAB Protein SDE2 homolog OS=Pongo abelii GN=SDE2 PE=2 SV=1
Length = 451
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 246 LDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAK 305
+DL +++V EL +G E+LK EL A GLK GGTLQ+RA RLF + +++D FAK
Sbjct: 385 IDLLAFTSVAELELLGLEKLKCELMALGLKCGGTLQERAARLFSVRGLAKEQIDPALFAK 444
Query: 306 GARGKEQ 312
+GK++
Sbjct: 445 PLKGKKK 451
>sp|Q6NRI5|SDE2_XENLA Protein SDE2 homolog OS=Xenopus laevis GN=sde2 PE=2 SV=1
Length = 454
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 38/60 (63%)
Query: 244 SELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHF 303
S +DL Y TV EL +G E+LK EL A GLK GGTLQ+RA RLF + D++D F
Sbjct: 386 SSIDLVAYKTVAELEALGLEKLKLELVALGLKCGGTLQERAARLFSVRGLARDQIDPSLF 445
>sp|Q96R06|SPAG5_HUMAN Sperm-associated antigen 5 OS=Homo sapiens GN=SPAG5 PE=1 SV=2
Length = 1193
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 294 PLDKLDKKHFAKGARGKE-QNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQN 352
PL DK F + A Q P +E +L ++++M +++ LC LL E+ E I+
Sbjct: 940 PLLGSDKSAFTRVASMVSLQPAETPGMEE--SLAEMSIMTTELQSLCSLLQESKEEAIRT 997
Query: 353 VQKKQALTYEEMEAEREEQEETQVDTESDDE 383
+Q+K ++A+ E+ +E Q E+D E
Sbjct: 998 LQRKICELQARLQAQEEQHQEVQKAKEADIE 1028
>sp|Q9HJS3|END4_THEAC Probable endonuclease 4 OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=nfo PE=3 SV=1
Length = 281
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 11 AAHEEVERLERLVVKDLQTEPNSNKDRLVQSHRVRNMIDTITD-TTERLIEIYADKDNA- 68
A H+E++R ++L L P SN DR RVR+ + TI D LIE A + N
Sbjct: 99 AFHDEIDRSDKLGSTFLTVHPGSNPDRADGIRRVRDALSTIGDHAVIILIENTAGQGNVI 158
Query: 69 --RKDEIAAL 76
R DE+A +
Sbjct: 159 GTRLDEVAKI 168
>sp|P78711|ACT_NEUCR Actin OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS
708.71 / DSM 1257 / FGSC 987) GN=act-1 PE=3 SV=2
Length = 375
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 24/121 (19%)
Query: 166 FSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRT---EPLQDLDRIFSKVVADFEEQWV 222
F+ PH I R R +Y+ K+L Y F T E ++D+ V DFE++
Sbjct: 169 FALPHAIARVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRDIKEKLCYVALDFEQEIQ 228
Query: 223 TSTLQGWETEGQENGHVPAQHSELDLDYYSTVEELMEVGSERLKE-----ELAAKGLKSG 277
T+ AQ S L+ Y +++ +G+ER + + + GL+SG
Sbjct: 229 TA----------------AQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSVLGLESG 272
Query: 278 G 278
G
Sbjct: 273 G 273
>sp|Q6TCF2|ACT_GAEGA Actin OS=Gaeumannomyces graminis var. avenae GN=ACT PE=2 SV=1
Length = 375
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 24/121 (19%)
Query: 166 FSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRT---EPLQDLDRIFSKVVADFEEQWV 222
F+ PH I R R +Y+ K+L Y F T E ++D+ V DFE++
Sbjct: 169 FALPHAIARVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRDIKEKLCYVALDFEQEIQ 228
Query: 223 TSTLQGWETEGQENGHVPAQHSELDLDYYSTVEELMEVGSERLKE-----ELAAKGLKSG 277
T+ AQ S L+ Y +++ +G+ER + + + GL+SG
Sbjct: 229 TA----------------AQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSVLGLESG 272
Query: 278 G 278
G
Sbjct: 273 G 273
>sp|Q9UVW9|ACTG_ACRCH Actin, gamma OS=Acremonium chrysogenum GN=ACT PE=3 SV=1
Length = 375
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 24/121 (19%)
Query: 166 FSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRT---EPLQDLDRIFSKVVADFEEQWV 222
F+ PH I R R +Y+ K+L Y F T E ++D+ V DFE++
Sbjct: 169 FALPHAIARVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRDIKEKLCYVALDFEQEIQ 228
Query: 223 TSTLQGWETEGQENGHVPAQHSELDLDYYSTVEELMEVGSERLKE-----ELAAKGLKSG 277
T+ AQ S L+ Y +++ +G+ER + + + GL+SG
Sbjct: 229 TA----------------AQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSVLGLESG 272
Query: 278 G 278
G
Sbjct: 273 G 273
>sp|O13419|ACT_BOTFU Actin OS=Botryotinia fuckeliana GN=actA PE=3 SV=1
Length = 375
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 24/121 (19%)
Query: 166 FSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRT---EPLQDLDRIFSKVVADFEEQWV 222
FS PH I R R +Y+ K+L Y F T E ++D+ V DFE++
Sbjct: 169 FSLPHAIARVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRDIKEKLCYVALDFEQEIQ 228
Query: 223 TSTLQGWETEGQENGHVPAQHSELDLDYYSTVEELMEVGSERLKE-----ELAAKGLKSG 277
T++ Q S L+ Y +++ +G+ER + + + GL+SG
Sbjct: 229 TAS----------------QSSSLEKSYELPDGQVITIGNERFRAPEALFQPSVLGLESG 272
Query: 278 G 278
G
Sbjct: 273 G 273
>sp|Q9URS0|ACTG_PENCH Actin, gamma OS=Penicillium chrysogenum GN=ACT PE=3 SV=1
Length = 375
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 24/121 (19%)
Query: 166 FSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRT---EPLQDLDRIFSKVVADFEEQWV 222
FS PH I R R +Y+ K+L Y F T E ++D+ V DFE++
Sbjct: 169 FSLPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRDIKEKLCYVALDFEQEIQ 228
Query: 223 TSTLQGWETEGQENGHVPAQHSELDLDYYSTVEELMEVGSERLKEELA-----AKGLKSG 277
T++ Q S L+ Y +++ +G+ER + A GL+SG
Sbjct: 229 TAS----------------QSSSLEKSYELPDGQVITIGNERFRAPEALFQPNVLGLESG 272
Query: 278 G 278
G
Sbjct: 273 G 273
>sp|P20359|ACTG_EMENI Actin, gamma OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=acnA PE=3 SV=2
Length = 375
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 24/121 (19%)
Query: 166 FSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRT---EPLQDLDRIFSKVVADFEEQWV 222
F+ PH I R R +Y+ K+L Y F T E ++D+ V DFE++
Sbjct: 169 FALPHAISRVDMAGRDLTDYLMKILAERGYTFSTTAEREIVRDIKEKLCYVALDFEQEIQ 228
Query: 223 TSTLQGWETEGQENGHVPAQHSELDLDYYSTVEELMEVGSERLKE-----ELAAKGLKSG 277
T++ Q S L+ Y +++ +G+ER + + + GL+SG
Sbjct: 229 TAS----------------QSSSLEKSYELPDGQVITIGNERFRAPEALFQPSVLGLESG 272
Query: 278 G 278
G
Sbjct: 273 G 273
>sp|A3GFA2|SEC23_PICST Protein transport protein SEC23 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=SEC23 PE=3 SV=2
Length = 749
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 101/264 (38%), Gaps = 47/264 (17%)
Query: 105 PSARVAVDASEDYENL--LKEEPLVEFS--------GEEAYGRYLDLHELYNQYINSKF- 153
P + +D +D +NL LKE +V S G YG + +H+L ++ I+ +
Sbjct: 123 PIFFLLIDLCQDEDNLAALKETLIVSLSLLPPNALIGLITYGTMVQVHDLGSEKISKSYI 182
Query: 154 ---GKEIEYSAYLDVFSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIF 210
KE D+ +RP P+ Q ++ L + + P++D++
Sbjct: 183 FRGDKEYTEKQISDMLNRPTSTPQG-----QLPQFANSLTRFFL-------PVEDVEFQL 230
Query: 211 SKVVADF-EEQWVTSTLQGWETEGQENGHVPAQHSELDLDYYSTVEELMEVG-SERLKEE 268
+ ++ + ++ W + NG P + + L+ + + G R+
Sbjct: 231 TSILENLGKDPWTVA-----------NGDRPLRSTGSALNVAANLLGSTFPGFGARIMLF 279
Query: 269 LAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAKGAR------GKEQNGVAPATQEV 322
A G S G + + + H+ +DK + KHF K + K
Sbjct: 280 SAGPGTLSPGLIVGPQLKEPIRSHSDIDKDNAKHFKKAVKFYDSIAAKMVKNAHTVDIFA 339
Query: 323 GNLKDIALMEAKMKKLCDLLSETI 346
G I ++E MK LC+L T+
Sbjct: 340 GCYDQIGMLE--MKNLCNLTGGTL 361
>sp|Q8X119|ACT_EXODE Actin OS=Exophiala dermatitidis PE=3 SV=1
Length = 375
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 24/121 (19%)
Query: 166 FSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRT---EPLQDLDRIFSKVVADFEEQWV 222
F+ PH I R R +Y+ K+L Y F T E ++D+ V DFE++
Sbjct: 169 FALPHAISRVDMAGRDLTDYLMKILAERGYSFSTTAEREIVRDIKEKLCYVALDFEQEIQ 228
Query: 223 TSTLQGWETEGQENGHVPAQHSELDLDYYSTVEELMEVGSERLKE-----ELAAKGLKSG 277
T++ Q S L+ Y +++ +G+ER + + + GL+SG
Sbjct: 229 TAS----------------QSSRLEQSYELPDGQVITIGNERFRAPEALFQPSVLGLESG 272
Query: 278 G 278
G
Sbjct: 273 G 273
>sp|Q747X9|SYI_GEOSL Isoleucine--tRNA ligase OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=ileS PE=3 SV=1
Length = 923
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 154 GKEIEYSAYLDVFSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKV 213
G IE ++ S+ HE KL+M +Q REY EK + F+R L D DR + +
Sbjct: 98 GLPIELQVEKNLGSKKHET-TKLQMRKQCREYAEKFVHVQRAEFERLGVLGDWDRPYLTM 156
Query: 214 VADFE 218
D+E
Sbjct: 157 SYDYE 161
>sp|A7Z610|Y2074_BACA2 UPF0302 protein RBAM_020740 OS=Bacillus amyloliquefaciens (strain
FZB42) GN=RBAM_020740 PE=3 SV=1
Length = 179
Score = 32.7 bits (73), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 158 EYSAYLDVFSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRTEPLQDLD 207
EY+A L+ S PH +P+ L +Q + EK+LE+ I FQR + L+D+D
Sbjct: 111 EYAAVLE--SNPH-LPKDLFENKQDQGMAEKILEHAISTFQREKLLKDID 157
>sp|Q8TX72|TRM56_METKA tRNA (cytidine(56)-2'-O)-methyltransferase OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=MK0803 PE=3 SV=1
Length = 178
Score = 32.3 bits (72), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 21 RLVVKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIEIYADKDNARKDEIA----AL 76
R V+KD + S + + ++I + E L+ + A K A E++ A+
Sbjct: 72 RRVIKDWKRSGGSVVHLTMYGLHIDDVIGELRGENELLVIVGAGKVPAEVFELSDYNVAI 131
Query: 77 GGQTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASE 115
G Q + + F DRL E +E HR AR+ V SE
Sbjct: 132 GHQPHSEVAALAVFLDRLYEGKELHREFERARLRVVPSE 170
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,295,266
Number of Sequences: 539616
Number of extensions: 7671918
Number of successful extensions: 32351
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 201
Number of HSP's that attempted gapping in prelim test: 31376
Number of HSP's gapped (non-prelim): 802
length of query: 447
length of database: 191,569,459
effective HSP length: 121
effective length of query: 326
effective length of database: 126,275,923
effective search space: 41165950898
effective search space used: 41165950898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)