BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013257
(447 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DYO|A Chain A, Crystal Structure Of Human Aspartyl Aminopeptidase (Dnpep)
In Complex With Aspartic Acid Hydroxamate
Length = 485
Score = 454 bits (1167), Expect = e-128, Method: Compositional matrix adjust.
Identities = 227/431 (52%), Positives = 300/431 (69%), Gaps = 6/431 (1%)
Query: 9 QWGINRFQREKIGNWKLARDTFFTRNHSTIIAFAVGKKYVAGNGFHVVGAHTDSPCLKLK 68
Q G + + + N K F TRN STIIAFAVG +YV GNGF ++GAHTDSPCL++K
Sbjct: 54 QAGFSELKETEKWNIKPESKYFMTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVK 113
Query: 69 PVSKVTKGGYLEVGVQTYGGGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRIDEPI 128
S+ ++ G+ +VGV+TYGGG+W TWFDRDLT+AGRVI++ SG +LV ++ PI
Sbjct: 114 RRSRRSQVGFQQVGVETYGGGIWSTWFDRDLTLAGRVIVK--CPTSGRLEQQLVHVERPI 171
Query: 129 MRIPTLAIHLDRNVNSDGFKVNTQSHLVPILATSLKEELNKVVTDSPNERTDTYSSKHHS 188
+RIP LAIHL RN+N + F NT+ HLVPILAT+++EEL K T P + +HHS
Sbjct: 172 LRIPHLAIHLQRNIN-ENFGPNTEMHLVPILATAIQEELEKG-TPEPGP-LNAVDERHHS 228
Query: 189 HLLQMIASQIGCRPDDICDFELQACDTQPSIVAGIKKEFIFSGRLDNLCMSFCSLKALID 248
L+ ++ + +G P DI + EL DTQP+++ G EFIF+ RLDNL FC+L+ALID
Sbjct: 229 VLMSLLCAHLGLSPKDIVEMELCLADTQPAVLGGAYDEFIFAPRLDNLHSCFCALQALID 288
Query: 249 STSSEGDLEDEIGVRMVALFDHEEVGSDSAQGAGSPAMLDALSRITNSFCSNSKLIEKAI 308
S + G L E VRMV L+D+EEVGS+SAQGA S L RI+ S C + E+AI
Sbjct: 289 SCAGPGSLATEPHVRMVTLYDNEEVGSESAQGAQSLLTELVLRRISAS-CQHPTAFEEAI 347
Query: 309 QRSFLVSADMAHALHPNYMDKHEDNHQPKLHGGLVIKHNANQRYATNAVTSFVFREVASK 368
+SF++SADMAHA+HPNY+DKHE+NH+P H G VIK N+ QRYA+NAV+ + REVA+K
Sbjct: 348 PKSFMISADMAHAVHPNYLDKHEENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVANK 407
Query: 369 HNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEH 428
+P+QD +VRND CG+TIGPILAS +G+R +D+G+PQL+MHSIREM V +
Sbjct: 408 VKVPLQDLMVRNDTPCGTTIGPILASRLGLRVLDLGSPQLAMHSIREMACTTGVLQTLTL 467
Query: 429 FKAFFQEFSEL 439
FK FF+ F L
Sbjct: 468 FKGFFELFPSL 478
>pdb|3VAR|A Chain A, Crystal Structure Of Dnpep, Znzn Form
pdb|3VAT|A Chain A, Crystal Structure Of Dnpep, Znmg Form
Length = 496
Score = 447 bits (1150), Expect = e-126, Method: Compositional matrix adjust.
Identities = 227/439 (51%), Positives = 302/439 (68%), Gaps = 8/439 (1%)
Query: 9 QWGINRFQREKIGNWKLARDTFFTRNHSTIIAFAVGKKYVAGNGFHVVGAHTDSPCLKLK 68
Q G + + + + K F TRN STIIAFAVG +YV GNGF ++GAHTDSPCL++K
Sbjct: 65 QAGFHELKETESWDIKPESKYFLTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVK 124
Query: 69 PVSKVTKGGYLEVGVQTYGGGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRIDEPI 128
S+ ++ G+ +VGV+TYGGG+W TWFDRDLT+AGRVI++ SG +LV +D PI
Sbjct: 125 RRSRRSQVGFQQVGVETYGGGIWSTWFDRDLTLAGRVIVK--CPTSGRLEQRLVHVDRPI 182
Query: 129 MRIPTLAIHLDRNVNSDGFKVNTQSHLVPILATSLKEELNKVVTDS-PNERTDTYSSKHH 187
+RIP LAIHL RNVN + F N + HLVPILATS++EEL K + P TD +HH
Sbjct: 183 LRIPHLAIHLQRNVN-ENFGPNMEMHLVPILATSIQEELEKGTPEPGPLNATD---ERHH 238
Query: 188 SHLLQMIASQIGCRPDDICDFELQACDTQPSIVAGIKKEFIFSGRLDNLCMSFCSLKALI 247
S L ++ + +G P+DI + EL DTQP+++ G +EFIF+ RLDNL FC+L+ALI
Sbjct: 239 SVLTSLLCAHLGLSPEDILEMELCLADTQPAVLGGAYEEFIFAPRLDNLHSCFCALQALI 298
Query: 248 DSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQGAGSPAMLDALSRITNSFCSNSKLIEKA 307
DS S+ L + VRM+AL+D+EEVGS+SAQGA S L RI+ S + E+A
Sbjct: 299 DSCSAPASLAADPHVRMIALYDNEEVGSESAQGAQSLLTELVLRRISAS-PQHLTAFEEA 357
Query: 308 IQRSFLVSADMAHALHPNYMDKHEDNHQPKLHGGLVIKHNANQRYATNAVTSFVFREVAS 367
I +S+++SADMAHA+HPNY+DKHE+NH+P H G VIK N+ QRYA+NAV+ + REVAS
Sbjct: 358 IPKSYMISADMAHAVHPNYLDKHEENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVAS 417
Query: 368 KHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYE 427
+P+QD +VRND CG+TIGPILAS +G+R +D+G+PQL+MHSIRE V +
Sbjct: 418 SVGVPLQDLMVRNDSPCGTTIGPILASRLGLRVLDLGSPQLAMHSIRETACTTGVLQTIT 477
Query: 428 HFKAFFQEFSELDAKIKVD 446
FK FF+ F L + VD
Sbjct: 478 LFKGFFELFPSLSRSLLVD 496
>pdb|2IJZ|A Chain A, Crystal Structure Of Aminopeptidase
pdb|2IJZ|B Chain B, Crystal Structure Of Aminopeptidase
pdb|2IJZ|C Chain C, Crystal Structure Of Aminopeptidase
pdb|2IJZ|D Chain D, Crystal Structure Of Aminopeptidase
pdb|2IJZ|E Chain E, Crystal Structure Of Aminopeptidase
pdb|2IJZ|F Chain F, Crystal Structure Of Aminopeptidase
pdb|2IJZ|G Chain G, Crystal Structure Of Aminopeptidase
pdb|2IJZ|H Chain H, Crystal Structure Of Aminopeptidase
pdb|2IJZ|I Chain I, Crystal Structure Of Aminopeptidase
pdb|2IJZ|J Chain J, Crystal Structure Of Aminopeptidase
pdb|2IJZ|K Chain K, Crystal Structure Of Aminopeptidase
pdb|2IJZ|L Chain L, Crystal Structure Of Aminopeptidase
Length = 428
Score = 313 bits (802), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 179/410 (43%), Positives = 242/410 (59%), Gaps = 34/410 (8%)
Query: 30 FFTRNHSTIIAFAVGKKYVAGNGFHVVGAHTDSPCLKLKPVSKVTKGGYLEVGVQTYGGG 89
+ TRN S++IA +G++ +GF +VGAHTDSPCL++KP ++ + G+L++GV+ YGG
Sbjct: 52 YVTRNDSSLIAIRLGRRSPLESGFRLVGAHTDSPCLRVKPNPEIARNGFLQLGVEVYGGA 111
Query: 90 LWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRIDEPIMRIPTLAIHLDRNVNSDGFKV 149
L+ WFDRDL++AGRV R +G +LV + I IP L IHL+R N +G+ +
Sbjct: 112 LFAPWFDRDLSLAGRVTFR----ANGKLESRLVDFRKAIAVIPNLNIHLNRAAN-EGWPI 166
Query: 150 NTQSHLVPILATSLKEELNKVVTDSPNERTDTYSSKHHSHLLQMIASQIGCRPDDICDFE 209
N Q+ L PI+A +P E D L + + + G D + D+E
Sbjct: 167 NAQNELPPIIAQL-----------APGEAAD-----FRLLLDEQLLREHGITADVVLDYE 210
Query: 210 LQACDTQPSIVAGIKKEFIFSGRLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFD 269
L DTQ + V G+ EFI RLDNL L+AL+++ EGD E+ I + D
Sbjct: 211 LSFYDTQSAAVVGLNDEFIAGARLDNLLSCHAGLEALLNA---EGD-ENCI----LVCTD 262
Query: 270 HEEVGSDSAQGAGSPAMLDALSRITNSFCSNSKLIEKAIQRSFLVSADMAHALHPNYMDK 329
HEEVGS S GA P + L R+ +AIQRS LVSAD AH +HPNY D+
Sbjct: 263 HEEVGSCSHCGADGPFLEQVLRRL----LPEGDAFSRAIQRSLLVSADNAHGVHPNYADR 318
Query: 330 HEDNHQPKLHGGLVIKHNANQRYATNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIG 389
H+ NH P L+GG VIK N+NQRYATN+ T+ FR + +PVQ FV R+DM CGSTIG
Sbjct: 319 HDANHGPALNGGPVIKINSNQRYATNSETAGFFRHLCQDSEVPVQSFVTRSDMGCGSTIG 378
Query: 390 PILASGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQEFSEL 439
PI AS VG+RTVD+G P +MHSIRE+ D+ H + AF+ SEL
Sbjct: 379 PITASQVGVRTVDIGLPTFAMHSIRELAGSHDLAHLVKVLGAFYAS-SEL 427
>pdb|4EME|A Chain A, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
pdb|4EME|B Chain B, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
pdb|4EME|C Chain C, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
pdb|4EME|D Chain D, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
Length = 571
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/336 (31%), Positives = 169/336 (50%), Gaps = 39/336 (11%)
Query: 139 DRNVNSDGFKVNTQSHLVPILATSLKEELNKVVTDSPNER--TDTYSSKHHSHLLQMIAS 196
D++V++ NT HL EE NK D+PN + + ++ + LL +++
Sbjct: 232 DKDVSNHNLDKNTIEHL----TNQQNEEKNKHTKDNPNSKDIVEHINTDNSYPLLYLLSK 287
Query: 197 QIGCRPDDICDFELQACDTQPSIVAGIKKEFIFSGRLDNLCMSFCSLKALIDSTSSEGD- 255
++ C+ +DI DFEL DTQ G+ +EFI R DNL SFC + I+ +S +
Sbjct: 288 ELNCKEEDILDFELCLMDTQEPCFTGVYEEFIEGARFDNLLGSFCVFEGFIELVNSIKNH 347
Query: 256 -----------------LEDEIGVRMVALFDHEEVGSDSAQGAGSPAMLDALSRITNSF- 297
+ + +DHEE+GS S GA S + + RI +S
Sbjct: 348 TSNENTNHTNNITNDINDNIHNNLYISIGYDHEEIGSLSEVGARSYCTKNFIDRIISSVF 407
Query: 298 --------CSNSKLIEKAIQRSFLVSADMAHALHPNYMDKHEDNHQPKLHGGLVIKHNAN 349
S ++ + RSF+++ DMAH HPNY + +DNHQ H G+ IK+N N
Sbjct: 408 KKEIHEKNLSVQEIYGNLVNRSFILNVDMAHCSHPNYPETVQDNHQLFFHEGIAIKYNTN 467
Query: 350 QRYATNAV------TSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDV 403
+ Y T+ + +F K + Q+F+V+ND CGST+G ++A+ + + +D+
Sbjct: 468 KNYVTSPLHASLIKRTFELYYNKYKQQIKYQNFMVKNDTPCGSTVGSMVAANLSMPGIDI 527
Query: 404 GAPQLSMHSIREMCAVDDVKHSYEHFKAFFQEFSEL 439
G PQL+MHSIRE+ AV DV + AF+ ++++
Sbjct: 528 GIPQLAMHSIREIAAVHDVFFLIKGVFAFYTYYNQV 563
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 87/151 (57%), Gaps = 8/151 (5%)
Query: 23 WKLARDTFFT--RNHSTIIAFAVGKKYVAGNGFHVVG-AHTDSPCLKLKPVSKVTKGGYL 79
W L ++ + + + I F VGK + G ++ H DS LK+ P + V K
Sbjct: 48 WNLNKNEGYVLCKENRNICGFFVGKNFNIDTGSILISIGHIDSCALKISPNNNVIKKKIH 107
Query: 80 EVGVQTYGGGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRIDEPIMRIPTLAIHLD 139
++ V+ YG GLWHTWFDR L ++G+V+ ++G KL++I++ ++ +P+LAIHL
Sbjct: 108 QINVECYGSGLWHTWFDRSLGLSGQVLYKKG----NKLVEKLIQINKSVLFLPSLAIHLQ 163
Query: 140 RNVNSD-GFKVNTQSHLVPILATSLKEELNK 169
D K+N ++H+ PI++T+L +LNK
Sbjct: 164 NRTRYDFSVKINYENHIKPIISTTLFNQLNK 194
>pdb|1Y7E|A Chain A, The Crystal Structure Of Aminopeptidase I From Borrelia
Burgdorferi B31
Length = 458
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 107/425 (25%), Positives = 189/425 (44%), Gaps = 47/425 (11%)
Query: 28 DTFFTRNHSTIIAFAVGKKYVAGNGFHVVGAHTDSPCLKLKPVSKVTKGGYLEVGVQTYG 87
D F +AFA+ K +G + + +HTDSP L KP + + YG
Sbjct: 64 DKIFYTCREKSVAFAIIGKNPIEDGXNFIVSHTDSPRLDAKPSPISEENELTFIKTNYYG 123
Query: 88 GGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRID------EPIMRIPTLAIHLDRN 141
G + W L++ G V ++ G+ V I+ +P+ IP + HLDR
Sbjct: 124 GIKKYQWLSTPLSIRGVVFLKNGEK---------VEINIGDNENDPVFVIPDILPHLDRK 174
Query: 142 VNSDGFKVNTQSHLVPILATSLKEELNKVVTDSPNERTDTYSSKHHSHLLQMIASQIGCR 201
+ N +S + E L ++ P E + +K LQ+I +
Sbjct: 175 IQR-----NKKSDEI-----VEGENLKILIGSLPIETKE--KNKVKLATLQLIKEKYKIE 222
Query: 202 PDDICDFELQACDTQPSIVAGIKKEFIFS-GRLDNLCMSFCSLKALIDSTSSEGDLEDEI 260
+D E++ + G K I + G+ D +C+ F SL+++ D +
Sbjct: 223 EEDFVSSEIEIVPAGTAKDVGFDKALIGAYGQDDKICV-FTSLESIFDLEETPNK----- 276
Query: 261 GVRMVALFDHEEVGSDSAQGAGSPAM----LDALSRITNSFCSNSKLIEKAIQRSFLVSA 316
+ L D EE+GS + G S + D + +I S +N ++KA+ S +SA
Sbjct: 277 -TAICFLVDKEEIGSTGSTGLDSRYLEYFVSDXIFKIKKSEYNNLH-VQKALWNSKSISA 334
Query: 317 DMAHALHPNYMDKHEDNHQPKLHGGLVIKH---NANQRYATNAVTSFV--FREVASKHNL 371
D+ A++P + H++ + P+L G+ I + + A++A V R++ +K+N+
Sbjct: 335 DVCAAINPLFSSVHDEQNAPQLGYGIPIXKYTGHGGKSMASDADAELVSYIRQLLNKNNI 394
Query: 372 PVQDFVV-RNDMACGSTIGPILASGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFK 430
Q + + + G T+ LA G GIRT+D G +S HS E+ + D+ ++Y +K
Sbjct: 395 AWQVATLGKVEEGGGGTVAKFLA-GYGIRTIDXGPAVISXHSPXEITSKFDLYNAYLAYK 453
Query: 431 AFFQE 435
AF++E
Sbjct: 454 AFYRE 458
>pdb|2GLF|A Chain A, Crystal Structure Of Aminipeptidase (m18 Family) From
Thermotoga Maritima
pdb|2GLF|B Chain B, Crystal Structure Of Aminipeptidase (m18 Family) From
Thermotoga Maritima
pdb|2GLF|C Chain C, Crystal Structure Of Aminipeptidase (m18 Family) From
Thermotoga Maritima
pdb|2GLF|D Chain D, Crystal Structure Of Aminipeptidase (m18 Family) From
Thermotoga Maritima
Length = 450
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 100/396 (25%), Positives = 175/396 (44%), Gaps = 41/396 (10%)
Query: 52 GFHVVGAHTDSPCLKLKPVSKVTKGGYLEVGVQTYGGGLWHTWFDRDLTVAGRVIIREGK 111
G ++V AH DSP L KP + YGG + W L + G V+ +
Sbjct: 85 GLNLVVAHIDSPRLDFKPNPLIEDEQIALFKTHYYGGIKKYHWLSIPLEIHG-VLFK--N 141
Query: 112 DGSGPYSHKLVRIDEPIMRIPTLAIHLDRNVN--SDGFKVNTQSHLVPILATSLKEELNK 169
DG+ H + ++P+ IP L HLD+ S+ FK + + S EE
Sbjct: 142 DGTEIEIHIGDKPEDPVFTIPDLLPHLDKEDAKISEKFKGENLXLIAGTIPLS-GEEKEA 200
Query: 170 VVTDSPNERTDTYSSKHHSHLLQMIASQIGCRPDDICDFELQACDTQPSIVAGIKKEFIF 229
V T+ +L+++ G +D E++ G + I
Sbjct: 201 VKTN----------------VLKILNEXYGITEEDFVSGEIEVVPAFSPREVGXDRSLIG 244
Query: 230 S-GRLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQGAGSPAMLD 288
+ G+ D +C ++ +L+AL+ + E IGV FD EE+GSD GA + L
Sbjct: 245 AYGQDDRIC-AYTALRALLSANP-----EKSIGV---IFFDKEEIGSDGNTGAKARFYLK 295
Query: 289 ALSRITNSFCSNSK--LIEKAIQRSFLVSADMAHALHPNYMDKHEDNHQPKL-HGGLVIK 345
AL +I + ++++ ++ + ++S D+ A++P Y D H+ ++ PKL +G ++K
Sbjct: 296 ALRQILKXQGAKDSEFVLDEVLENTSVISGDVCAAVNPPYKDVHDLHNAPKLGYGVALVK 355
Query: 346 HN-ANQRYATN-AVTSFV--FREVASKHNLPVQDFVV-RNDMACGSTIGPILASGVGIRT 400
+ A +Y+TN A FV R+V ++ + Q + + D G TI A G
Sbjct: 356 YTGARGKYSTNDAHAEFVARVRKVLNEQGVIWQVATLGKVDQGGGGTIAKFFAER-GSDV 414
Query: 401 VDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQEF 436
+D G L HS E+ + D+ +Y +++ ++
Sbjct: 415 IDXGPALLGXHSPFEISSKADLFETYVAYRSLXEKL 450
>pdb|2GLJ|A Chain A, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|B Chain B, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|C Chain C, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|D Chain D, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|E Chain E, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|F Chain F, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|G Chain G, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|H Chain H, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|I Chain I, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|J Chain J, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|K Chain K, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|L Chain L, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|M Chain M, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|N Chain N, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|O Chain O, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|P Chain P, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|Q Chain Q, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|R Chain R, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|S Chain S, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|T Chain T, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|U Chain U, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|V Chain V, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|W Chain W, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|X Chain X, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
Length = 461
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 100/426 (23%), Positives = 188/426 (44%), Gaps = 56/426 (13%)
Query: 28 DTFFTRNHST-IIAFAVGKKYVAGNGFHVVGAHTDSPCLKLK--PVSKVTKGGYLEVGVQ 84
D + N +I F +GK+ + GF ++GAH DSP L LK P+ + T LE
Sbjct: 70 DKVYANNRGKGLIMFLIGKEPLY-TGFKILGAHIDSPRLDLKQNPLYEDTDLAMLET--H 126
Query: 85 TYGGGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRI------DEPIMRIPTLAIHL 138
YGG + W L + G VI++ KDG+ +V + ++P+ + + +HL
Sbjct: 127 YYGGIKKYQWVTLPLAIHG-VIVK--KDGT------IVNVCVGEDDNDPVFGVSDILVHL 177
Query: 139 DRNVNSDGFKVNTQSHLVPILATSL--KEELNKVVTDSPNERTDTYSSKHHSHLLQMIAS 196
S + A+ + E+LN ++ P + + H ++++++
Sbjct: 178 -------------ASEQLEKKASKVIEGEDLNILIGSIPLKDGEEKQKVKH-NIMKILNE 223
Query: 197 QIGCRPDDICDFELQACDTQPSIVAGIKKEFIFS-GRLDNLCMSFCSLKALIDSTSSEGD 255
+ +D EL+ + G + + G+ D +C ++ S +A+++ +++
Sbjct: 224 KYDISEEDFVSAELEIVPAGKARDYGFDRSMVMGYGQDDRIC-AYTSFEAMLEMKNAKKT 282
Query: 256 LEDEIGVRMVALFDHEEVGSDSAQGAGSPAMLDALSRITNSFCSNSKLIE--KAIQRSFL 313
+ L D EEVGS A G S + ++ I S C + ++ KA+ S +
Sbjct: 283 C-------ITILVDKEEVGSIGATGMQSKFFENTVADIM-SLCGDYDELKLRKALYNSEM 334
Query: 314 VSADMAHALHPNYMDKHEDNHQPKLHGGLVIKHNANQRYAT---NAVTSFV--FREVASK 368
+S+D++ A PNY + E + L G+V R + +A ++ R + SK
Sbjct: 335 LSSDVSAAFDPNYPNVMEKRNSAYLGKGIVFNKYTGSRGKSGCNDANPEYIAELRRILSK 394
Query: 369 HNLPVQDFVV-RNDMACGSTIGPILASGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYE 427
++ Q + + D G TI ILA G++ +D G L+ H+ E+ + D+ +
Sbjct: 395 ESVNWQTAELGKVDQGGGGTIAYILAE-YGMQVIDCGVALLNXHAPWEISSKADIYETKN 453
Query: 428 HFKAFF 433
+ AF
Sbjct: 454 GYSAFL 459
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 5 GVCKQWGINRFQREKIGNWKLARDTFFTRNHSTIIAFAVGKK-YVAG---NGFHVVGAHT 60
G K W + ++ EK N L R ++ H T G+K Y+A NGF V+
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLER-SWCIATHPT------GRKNYIASGFDNGFTVLSLGN 302
Query: 61 DSPCLKLKPVSKVTKGG 77
D P L L PV K+ G
Sbjct: 303 DEPTLSLDPVGKLVWSG 319
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 5 GVCKQWGINRFQREKIGNWKLARDTFFTRNHSTIIAFAVGKK-YVAG---NGFHVVGAHT 60
G K W + ++ EK N L R ++ H T G+K Y+A NGF V+
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLER-SWCIATHPT------GRKNYIASGFDNGFTVLSLGN 302
Query: 61 DSPCLKLKPVSKVTKGG 77
D P L L PV K+ G
Sbjct: 303 DEPTLSLDPVGKLVWSG 319
>pdb|3QI3|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With
Inhibitor Bay73-6691
pdb|3QI3|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With
Inhibitor Bay73-6691
pdb|3QI4|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
pdb|3QI4|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
Length = 533
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 141 NVNSDGFKVNTQSHLVPILATSLKEELNKVVTDSPNERTDT--YSSKHHSHLLQMI 194
N+ DGFK Q + ILAT + + DS E+ + YS++ H LL+MI
Sbjct: 343 NIPPDGFKQIRQGMITLILATDMARHAE--IMDSFKEKMENFDYSNEEHMTLLKMI 396
>pdb|2YY2|A Chain A, Crystal Structure Of The Human Phosphodiesterase 9a
Catalytic Domain Complexed With Ibmx
pdb|2YY2|B Chain B, Crystal Structure Of The Human Phosphodiesterase 9a
Catalytic Domain Complexed With Ibmx
Length = 333
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 141 NVNSDGFKVNTQSHLVPILATSLKEELNKVVTDSPNERTDT--YSSKHHSHLLQMI 194
N+ DGFK Q + ILAT + + + DS E+ + YS++ H LL+MI
Sbjct: 170 NIPPDGFKQIRQGMITLILATDMAR--HAEIMDSFKEKMENFDYSNEEHMTLLKMI 223
>pdb|3N3Z|A Chain A, Crystal Structure Of Pde9a (E406a) Mutant In Complex With
Ibmx
pdb|3N3Z|B Chain B, Crystal Structure Of Pde9a (E406a) Mutant In Complex With
Ibmx
Length = 326
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 141 NVNSDGFKVNTQSHLVPILATSLKEELNKVVTDSPNERTDT--YSSKHHSHLLQMI 194
N+ DGFK Q + ILAT + + + DS E+ + YS++ H LL+MI
Sbjct: 163 NIPPDGFKQIRQGMITLILATDMAR--HAEIMDSFKEKMENFDYSNEEHMTLLKMI 216
>pdb|2HD1|A Chain A, Crystal Structure Of Pde9 In Complex With Ibmx
pdb|2HD1|B Chain B, Crystal Structure Of Pde9 In Complex With Ibmx
pdb|3K3E|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (R)-Bay73-6691
pdb|3K3E|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (R)-Bay73-6691
pdb|3K3H|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (S)-Bay73-6691
pdb|3K3H|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With (S)-Bay73-6691
pdb|4GH6|A Chain A, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With Inhibitor 28
pdb|4GH6|B Chain B, Crystal Structure Of The Pde9a Catalytic Domain In Complex
With Inhibitor 28
Length = 326
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 141 NVNSDGFKVNTQSHLVPILATSLKEELNKVVTDSPNERTDT--YSSKHHSHLLQMI 194
N+ DGFK Q + ILAT + + + DS E+ + YS++ H LL+MI
Sbjct: 163 NIPPDGFKQIRQGMITLILATDMAR--HAEIMDSFKEKMENFDYSNEEHMTLLKMI 216
>pdb|3DY8|A Chain A, Human Phosphodiesterase 9 In Complex With Product 5'-gmp
(e+p Complex)
pdb|3DY8|B Chain B, Human Phosphodiesterase 9 In Complex With Product 5'-gmp
(e+p Complex)
pdb|3DYL|A Chain A, Human Phosphdiesterase 9 Substrate Complex (Es Complex)
pdb|3DYL|B Chain B, Human Phosphdiesterase 9 Substrate Complex (Es Complex)
pdb|3DYN|A Chain A, Human Phosphodiestrase 9 In Complex With Cgmp (Zn
Inhibited)
pdb|3DYN|B Chain B, Human Phosphodiestrase 9 In Complex With Cgmp (Zn
Inhibited)
pdb|3DYQ|A Chain A, Human Phosphodiestrase 9 (Inhibited By Omitting Divalent
Cation) In Complex With Cgmp
pdb|3DYQ|B Chain B, Human Phosphodiestrase 9 (Inhibited By Omitting Divalent
Cation) In Complex With Cgmp
pdb|3DYS|A Chain A, Human Phosphodiestrase-5'gmp Complex (Ep), Produced By
Soaking With 20mm Cgmp+20 Mm Mncl2+20 Mm Mgcl2 For 2
Hours, And Flash-Cooled To Liquid Nitrogen Temperature
When Substrate Was Still Abudant.
pdb|3DYS|B Chain B, Human Phosphodiestrase-5'gmp Complex (Ep), Produced By
Soaking With 20mm Cgmp+20 Mm Mncl2+20 Mm Mgcl2 For 2
Hours, And Flash-Cooled To Liquid Nitrogen Temperature
When Substrate Was Still Abudant.
pdb|3JSI|A Chain A, Human Phosphodiesterase 9 In Complex With Inhibitor
pdb|3JSI|B Chain B, Human Phosphodiesterase 9 In Complex With Inhibitor
pdb|3JSW|A Chain A, Human Pde9 In Complex With Selective Inhibitor
pdb|3JSW|B Chain B, Human Pde9 In Complex With Selective Inhibitor
pdb|4E90|A Chain A, Human Phosphodiesterase 9 In Complex With Inhibitors
pdb|4E90|B Chain B, Human Phosphodiesterase 9 In Complex With Inhibitors
Length = 329
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 141 NVNSDGFKVNTQSHLVPILATSLKEELNKVVTDSPNERTDT--YSSKHHSHLLQMI 194
N+ DGFK Q + ILAT + + + DS E+ + YS++ H LL+MI
Sbjct: 166 NIPPDGFKQIRQGMITLILATDMAR--HAEIMDSFKEKMENFDYSNEEHMTLLKMI 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,304,200
Number of Sequences: 62578
Number of extensions: 558330
Number of successful extensions: 1132
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1099
Number of HSP's gapped (non-prelim): 18
length of query: 447
length of database: 14,973,337
effective HSP length: 102
effective length of query: 345
effective length of database: 8,590,381
effective search space: 2963681445
effective search space used: 2963681445
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)