Query 013257
Match_columns 447
No_of_seqs 152 out of 1108
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 02:00:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2596 Aminopeptidase I zinc 100.0 1E-102 3E-107 771.1 32.8 438 5-446 37-479 (479)
2 PTZ00371 aspartyl aminopeptida 100.0 3.3E-99 7E-104 791.8 42.1 430 5-446 28-465 (465)
3 PRK02813 putative aminopeptida 100.0 3E-97 7E-102 770.5 41.2 397 6-435 28-427 (428)
4 PF02127 Peptidase_M18: Aminop 100.0 4.4E-98 1E-102 774.9 27.4 415 6-433 15-432 (432)
5 COG1362 LAP4 Aspartyl aminopep 100.0 5.3E-96 1E-100 736.9 32.9 403 6-435 30-435 (437)
6 PRK02256 putative aminopeptida 100.0 6.3E-94 1.4E-98 748.6 37.8 401 6-435 48-461 (462)
7 PRK09864 putative peptidase; P 100.0 9.2E-72 2E-76 566.2 27.9 332 3-438 6-343 (356)
8 COG1363 FrvX Cellulase M and r 100.0 8E-70 1.7E-74 548.1 28.4 334 3-439 8-349 (355)
9 TIGR03107 glu_aminopep glutamy 100.0 5.6E-68 1.2E-72 538.9 28.8 334 3-438 4-343 (350)
10 PRK09961 exoaminopeptidase; Pr 100.0 1E-63 2.2E-68 508.0 28.1 325 3-438 6-335 (344)
11 PF05343 Peptidase_M42: M42 gl 100.0 4.2E-62 9.1E-67 485.5 21.1 290 36-428 1-292 (292)
12 TIGR03106 trio_M42_hydro hydro 100.0 3.3E-60 7.1E-65 481.6 28.4 321 3-435 9-341 (343)
13 PF01546 Peptidase_M20: Peptid 98.6 1.2E-07 2.7E-12 87.1 9.1 160 224-435 25-189 (189)
14 TIGR01883 PepT-like peptidase 98.3 9.8E-06 2.1E-10 82.7 15.0 73 355-433 288-360 (361)
15 PRK08596 acetylornithine deace 97.7 0.00047 1E-08 72.3 13.5 56 384-440 363-419 (421)
16 TIGR01902 dapE-lys-deAc N-acet 97.6 0.00054 1.2E-08 69.5 11.2 79 354-437 255-334 (336)
17 PRK00466 acetyl-lysine deacety 97.6 0.001 2.2E-08 67.8 12.9 76 356-437 267-343 (346)
18 TIGR01893 aa-his-dipept aminoa 97.5 0.0015 3.3E-08 69.7 14.2 78 354-436 397-476 (477)
19 PRK10199 alkaline phosphatase 97.3 0.00042 9E-09 71.0 7.0 135 230-403 139-276 (346)
20 PF04389 Peptidase_M28: Peptid 97.3 0.00025 5.4E-09 65.2 4.3 154 228-424 20-177 (179)
21 PRK05469 peptidase T; Provisio 97.0 0.0016 3.5E-08 67.9 7.4 80 354-439 328-407 (408)
22 PRK05111 acetylornithine deace 96.9 0.013 2.9E-07 60.3 13.3 51 385-436 329-380 (383)
23 TIGR01882 peptidase-T peptidas 96.9 0.0033 7.2E-08 65.8 8.6 53 384-437 355-407 (410)
24 PRK13381 peptidase T; Provisio 96.9 0.0024 5.2E-08 66.5 7.4 78 354-437 326-403 (404)
25 PRK12891 allantoate amidohydro 96.6 0.0046 1E-07 64.7 7.3 78 354-438 331-410 (414)
26 PRK08554 peptidase; Reviewed 96.6 0.0051 1.1E-07 65.2 7.1 77 354-436 360-436 (438)
27 PRK07338 hypothetical protein; 96.0 0.012 2.6E-07 61.1 6.0 78 355-438 321-399 (402)
28 PRK08652 acetylornithine deace 95.8 0.012 2.5E-07 59.6 5.2 78 354-437 267-345 (347)
29 PRK09290 allantoate amidohydro 95.8 0.02 4.3E-07 59.9 7.0 77 354-437 332-410 (413)
30 TIGR01882 peptidase-T peptidas 95.8 0.012 2.7E-07 61.5 5.3 49 225-279 135-183 (410)
31 PRK07473 carboxypeptidase; Pro 95.7 0.011 2.4E-07 61.2 4.6 75 356-436 300-375 (376)
32 PRK12890 allantoate amidohydro 95.7 0.025 5.4E-07 59.1 7.2 78 354-438 333-412 (414)
33 TIGR01246 dapE_proteo succinyl 95.6 0.021 4.6E-07 58.5 6.2 76 355-436 294-370 (370)
34 PRK06837 acetylornithine deace 95.4 0.029 6.3E-07 59.0 6.4 78 355-437 344-422 (427)
35 PRK13983 diaminopimelate amino 95.3 0.041 8.9E-07 56.8 6.9 75 354-434 323-398 (400)
36 TIGR01880 Ac-peptdase-euk N-ac 95.2 0.046 1E-06 56.7 6.9 78 355-438 319-399 (400)
37 COG2195 PepD Di- and tripeptid 94.9 0.11 2.4E-06 54.7 8.8 93 340-438 317-413 (414)
38 PRK04443 acetyl-lysine deacety 94.9 0.055 1.2E-06 55.2 6.4 77 355-436 271-348 (348)
39 PRK13009 succinyl-diaminopimel 94.4 0.091 2E-06 53.8 6.7 75 356-436 298-373 (375)
40 PRK08651 succinyl-diaminopimel 94.3 0.087 1.9E-06 54.4 6.4 77 355-437 313-391 (394)
41 PRK06915 acetylornithine deace 94.2 0.094 2E-06 54.8 6.4 80 354-438 338-419 (422)
42 PRK08588 succinyl-diaminopimel 94.2 0.1 2.2E-06 53.7 6.5 77 355-436 296-375 (377)
43 PRK12893 allantoate amidohydro 94.1 0.097 2.1E-06 54.5 6.4 76 354-436 331-408 (412)
44 TIGR03176 AllC allantoate amid 94.1 0.11 2.5E-06 54.4 6.8 78 354-438 325-404 (406)
45 PRK09133 hypothetical protein; 93.7 0.11 2.4E-06 55.3 5.9 77 355-437 386-469 (472)
46 PRK15026 aminoacyl-histidine d 93.6 0.12 2.6E-06 55.6 6.1 79 354-437 403-483 (485)
47 PRK13004 peptidase; Reviewed 93.5 0.076 1.6E-06 55.2 4.2 78 355-437 317-396 (399)
48 PRK12892 allantoate amidohydro 93.4 0.14 3E-06 53.3 6.0 76 354-436 332-409 (412)
49 PRK15026 aminoacyl-histidine d 93.3 0.16 3.4E-06 54.7 6.2 57 234-319 115-171 (485)
50 PRK08737 acetylornithine deace 93.1 0.15 3.3E-06 52.6 5.5 72 356-434 290-362 (364)
51 PRK07318 dipeptidase PepV; Rev 92.9 0.11 2.3E-06 55.5 4.2 76 355-437 388-465 (466)
52 PRK13799 unknown domain/N-carb 92.5 0.24 5.1E-06 54.7 6.4 79 354-438 510-590 (591)
53 PRK06446 hypothetical protein; 92.1 0.23 4.9E-06 52.4 5.4 80 355-438 351-435 (436)
54 TIGR03526 selenium_YgeY putati 92.0 0.21 4.5E-06 51.9 5.0 77 355-436 315-393 (395)
55 TIGR03320 ygeY M20/DapE family 91.9 0.19 4.1E-06 52.2 4.5 78 355-437 315-394 (395)
56 PRK07906 hypothetical protein; 91.8 0.38 8.3E-06 50.4 6.7 77 354-436 340-426 (426)
57 TIGR01879 hydantase amidase, h 91.3 0.41 9E-06 49.8 6.3 76 354-435 324-400 (401)
58 PRK13590 putative bifunctional 91.2 0.36 7.7E-06 53.3 6.0 79 353-438 507-588 (591)
59 TIGR01910 DapE-ArgE acetylorni 91.1 0.3 6.4E-06 50.2 4.9 68 354-427 305-374 (375)
60 PRK07079 hypothetical protein; 90.8 0.55 1.2E-05 50.0 6.8 80 355-438 374-456 (469)
61 PRK08652 acetylornithine deace 90.8 0.32 6.9E-06 49.1 4.7 50 225-279 77-127 (347)
62 PRK06133 glutamate carboxypept 90.7 0.36 7.8E-06 50.5 5.2 77 356-436 328-406 (410)
63 PRK07205 hypothetical protein; 90.5 0.3 6.5E-06 51.6 4.5 53 224-279 105-158 (444)
64 PRK13381 peptidase T; Provisio 90.2 0.48 1E-05 49.3 5.6 52 226-281 125-181 (404)
65 COG2234 Iap Predicted aminopep 90.1 0.47 1E-05 49.8 5.4 73 230-324 224-296 (435)
66 PRK07522 acetylornithine deace 90.1 0.52 1.1E-05 48.4 5.7 71 356-436 312-383 (385)
67 PRK06915 acetylornithine deace 90.1 0.4 8.7E-06 50.1 4.9 53 224-279 123-176 (422)
68 PRK09104 hypothetical protein; 89.9 0.64 1.4E-05 49.4 6.3 78 355-437 381-462 (464)
69 PRK13013 succinyl-diaminopimel 89.8 0.71 1.5E-05 48.2 6.5 76 357-438 344-423 (427)
70 COG0624 ArgE Acetylornithine d 89.7 0.87 1.9E-05 47.4 7.0 78 355-438 329-408 (409)
71 PRK08201 hypothetical protein; 89.2 0.97 2.1E-05 47.9 7.0 78 355-438 373-455 (456)
72 PRK07318 dipeptidase PepV; Rev 88.9 0.41 9E-06 50.9 4.0 53 224-279 107-160 (466)
73 TIGR01910 DapE-ArgE acetylorni 88.8 0.42 9E-06 49.1 3.8 55 224-281 94-149 (375)
74 PRK08201 hypothetical protein; 88.3 0.57 1.2E-05 49.6 4.5 52 224-278 109-161 (456)
75 PRK09104 hypothetical protein; 88.1 0.65 1.4E-05 49.4 4.8 50 227-279 120-170 (464)
76 PRK08588 succinyl-diaminopimel 87.9 0.57 1.2E-05 48.1 4.2 54 224-280 89-143 (377)
77 PRK06156 hypothetical protein; 87.5 0.66 1.4E-05 50.3 4.6 53 225-280 144-197 (520)
78 PRK07907 hypothetical protein; 87.2 1.4 3E-05 46.7 6.6 78 355-437 365-447 (449)
79 PRK07907 hypothetical protein; 86.7 1.1 2.5E-05 47.3 5.7 50 224-279 113-163 (449)
80 TIGR01246 dapE_proteo succinyl 86.6 0.78 1.7E-05 47.0 4.3 54 224-280 85-140 (370)
81 TIGR01892 AcOrn-deacetyl acety 86.4 0.94 2E-05 46.0 4.7 47 385-432 316-363 (364)
82 PRK07473 carboxypeptidase; Pro 86.3 0.83 1.8E-05 47.3 4.3 52 225-279 102-154 (376)
83 PRK13983 diaminopimelate amino 86.1 0.86 1.9E-05 46.9 4.3 50 224-276 106-156 (400)
84 PRK08651 succinyl-diaminopimel 85.9 0.8 1.7E-05 47.2 4.0 50 225-280 104-154 (394)
85 TIGR01886 dipeptidase dipeptid 84.8 0.98 2.1E-05 48.2 4.1 52 384-437 413-465 (466)
86 PRK04443 acetyl-lysine deacety 84.5 2.3 4.9E-05 43.3 6.5 48 225-278 81-129 (348)
87 KOG2195 Transferrin receptor a 84.4 1.7 3.8E-05 48.8 5.9 151 220-416 356-514 (702)
88 PRK13007 succinyl-diaminopimel 84.3 1.4 3.1E-05 44.5 4.9 49 384-433 302-351 (352)
89 PRK08554 peptidase; Reviewed 84.3 1.3 2.8E-05 46.9 4.7 49 225-278 93-142 (438)
90 PRK06133 glutamate carboxypept 84.1 1.3 2.9E-05 46.2 4.7 53 225-280 126-179 (410)
91 PRK08262 hypothetical protein; 84.0 1.3 2.8E-05 47.4 4.6 52 225-279 144-196 (486)
92 PRK07205 hypothetical protein; 83.5 2.3 4.9E-05 45.0 6.1 73 355-437 365-442 (444)
93 PRK13007 succinyl-diaminopimel 83.4 1.6 3.5E-05 44.2 4.8 44 225-275 85-129 (352)
94 TIGR01892 AcOrn-deacetyl acety 83.0 1.7 3.7E-05 44.1 4.8 58 4-65 4-72 (364)
95 TIGR01880 Ac-peptdase-euk N-ac 82.8 1.5 3.3E-05 45.4 4.5 53 225-280 102-156 (400)
96 PRK09133 hypothetical protein; 81.9 1.8 3.8E-05 46.2 4.6 52 225-279 131-184 (472)
97 PRK07338 hypothetical protein; 81.8 1.8 3.8E-05 44.9 4.5 53 224-279 118-171 (402)
98 PRK13009 succinyl-diaminopimel 81.5 2 4.3E-05 43.9 4.7 49 224-275 88-137 (375)
99 TIGR01886 dipeptidase dipeptid 81.5 2.1 4.6E-05 45.7 5.1 12 52-63 79-90 (466)
100 PRK07522 acetylornithine deace 81.3 1.8 4E-05 44.4 4.4 49 227-280 96-145 (385)
101 TIGR01887 dipeptidaselike dipe 80.8 1.7 3.7E-05 46.2 4.0 52 225-279 96-148 (447)
102 PRK13013 succinyl-diaminopimel 80.0 2.2 4.8E-05 44.5 4.5 50 225-277 113-163 (427)
103 PRK05469 peptidase T; Provisio 79.0 2.9 6.2E-05 43.6 5.0 43 233-279 139-181 (408)
104 PRK06837 acetylornithine deace 78.0 2.9 6.3E-05 43.9 4.7 52 224-278 127-179 (427)
105 TIGR01893 aa-his-dipept aminoa 77.8 1.6 3.4E-05 46.8 2.6 61 4-65 11-76 (477)
106 PRK08262 hypothetical protein; 77.3 3.1 6.6E-05 44.5 4.6 77 355-436 400-483 (486)
107 TIGR01879 hydantase amidase, h 76.7 4.9 0.00011 41.8 5.9 55 230-287 82-141 (401)
108 PRK06156 hypothetical protein; 75.7 6 0.00013 42.9 6.4 74 355-438 438-516 (520)
109 PRK07079 hypothetical protein; 75.0 3.9 8.5E-05 43.5 4.7 54 225-280 117-171 (469)
110 TIGR03176 AllC allantoate amid 74.1 4.7 0.0001 42.3 4.9 60 228-290 82-146 (406)
111 PRK07906 hypothetical protein; 72.1 4.9 0.00011 42.0 4.6 53 224-279 94-148 (426)
112 PRK13004 peptidase; Reviewed 70.3 5.7 0.00012 41.2 4.5 48 224-274 99-147 (399)
113 TIGR01900 dapE-gram_pos succin 69.3 8.1 0.00017 39.9 5.4 49 226-275 94-143 (373)
114 PRK09290 allantoate amidohydro 69.0 5.8 0.00013 41.4 4.3 41 231-274 89-129 (413)
115 TIGR01891 amidohydrolases amid 68.7 3.5 7.7E-05 42.1 2.5 59 3-64 5-69 (363)
116 PRK06446 hypothetical protein; 68.0 6.1 0.00013 41.7 4.2 49 227-279 95-144 (436)
117 PLN02280 IAA-amino acid hydrol 67.5 11 0.00024 40.5 6.1 78 354-436 387-473 (478)
118 PRK13590 putative bifunctional 66.8 7 0.00015 43.2 4.5 60 227-289 263-327 (591)
119 PRK13799 unknown domain/N-carb 64.0 8.3 0.00018 42.6 4.4 61 226-289 262-327 (591)
120 PRK12891 allantoate amidohydro 62.8 3.5 7.6E-05 43.1 1.2 34 28-64 56-89 (414)
121 PRK12890 allantoate amidohydro 62.0 9 0.0002 39.9 4.1 43 230-275 89-131 (414)
122 PRK12893 allantoate amidohydro 61.6 8.4 0.00018 40.1 3.7 52 230-284 91-147 (412)
123 PRK10199 alkaline phosphatase 59.8 9.6 0.00021 39.4 3.7 25 36-64 98-122 (346)
124 TIGR01902 dapE-lys-deAc N-acet 59.0 5.2 0.00011 40.4 1.6 56 3-64 3-63 (336)
125 PRK12892 allantoate amidohydro 58.5 10 0.00023 39.3 3.8 50 230-282 89-143 (412)
126 PRK13365 protocatechuate 4,5-d 58.3 69 0.0015 32.0 9.4 121 306-437 45-178 (279)
127 KOG2275 Aminoacylase ACY1 and 55.3 18 0.00039 38.1 4.7 54 227-283 122-176 (420)
128 COG0624 ArgE Acetylornithine d 55.3 17 0.00036 37.8 4.7 74 225-318 106-180 (409)
129 cd07362 HPCD_like Class III ex 51.2 2.5E+02 0.0054 27.8 12.0 77 353-436 89-167 (272)
130 TIGR02298 HpaD_Fe 3,4-dihydrox 51.0 2.7E+02 0.0058 27.8 12.5 75 354-436 94-171 (282)
131 PLN02693 IAA-amino acid hydrol 50.6 11 0.00024 40.0 2.5 79 353-436 334-420 (437)
132 PRK08737 acetylornithine deace 49.4 21 0.00045 36.8 4.3 41 225-275 92-133 (364)
133 cd07950 Gallate_Doxase_N The N 48.0 73 0.0016 31.8 7.7 121 306-436 45-177 (277)
134 TIGR01883 PepT-like peptidase 47.6 13 0.00029 37.7 2.4 58 4-64 7-75 (361)
135 cd05565 PTS_IIB_lactose PTS_II 47.4 47 0.001 28.0 5.3 51 353-411 11-61 (99)
136 cd07372 2A5CPDO_B The beta sub 43.0 2.8E+02 0.006 28.0 11.0 82 354-437 96-180 (294)
137 TIGR01887 dipeptidaselike dipe 42.6 35 0.00077 36.3 4.8 69 355-433 374-447 (447)
138 TIGR03526 selenium_YgeY putati 42.5 35 0.00077 35.3 4.7 47 224-273 97-144 (395)
139 TIGR03320 ygeY M20/DapE family 41.9 32 0.0007 35.5 4.3 47 225-274 98-145 (395)
140 KOG2194 Aminopeptidases of the 41.3 28 0.00062 39.8 3.9 57 230-289 159-217 (834)
141 PLN02693 IAA-amino acid hydrol 40.3 56 0.0012 34.7 5.9 58 3-64 53-115 (437)
142 COG3655 Predicted transcriptio 38.7 24 0.00053 28.2 2.1 23 190-212 47-69 (73)
143 TIGR01900 dapE-gram_pos succin 38.6 16 0.00035 37.7 1.4 57 4-64 3-65 (373)
144 cd07371 2A5CPDO_AB The alpha a 37.4 4.1E+02 0.009 26.1 12.7 83 343-436 78-162 (268)
145 COG0496 SurE Predicted acid ph 36.8 31 0.00067 34.1 3.0 50 385-438 104-154 (252)
146 cd07370 HPCD The Class III ext 36.7 3.4E+02 0.0074 26.9 10.5 73 352-435 90-167 (280)
147 TIGR01891 amidohydrolases amid 36.4 39 0.00085 34.4 3.9 48 226-279 84-131 (363)
148 COG2195 PepD Di- and tripeptid 35.9 29 0.00062 36.9 2.8 45 233-279 143-187 (414)
149 cd07364 PCA_45_Dioxygenase_B S 34.7 3.4E+02 0.0073 27.1 10.1 122 306-437 45-178 (277)
150 PLN02280 IAA-amino acid hydrol 31.9 32 0.00069 37.1 2.4 59 3-65 103-166 (478)
151 PRK13933 stationary phase surv 27.8 79 0.0017 31.3 4.2 46 384-436 107-153 (253)
152 COG2257 Uncharacterized homolo 26.5 67 0.0014 26.8 2.8 22 355-376 30-51 (92)
153 PRK08596 acetylornithine deace 25.4 49 0.0011 34.6 2.4 28 35-63 62-89 (421)
154 PRK13602 putative ribosomal pr 25.0 1.7E+02 0.0036 23.6 5.0 22 355-376 38-59 (82)
155 PRK13601 putative L7Ae-like ri 24.7 3.3E+02 0.0071 22.1 6.6 20 355-374 35-54 (82)
156 PF04114 Gaa1: Gaa1-like, GPI 23.0 6.5E+02 0.014 27.4 10.5 95 342-443 114-232 (504)
157 PRK10602 murein peptide amidas 22.5 4.9E+02 0.011 25.4 8.5 70 355-436 165-234 (237)
158 PF09652 Cas_VVA1548: Putative 22.2 19 0.00041 30.1 -1.1 29 129-160 37-65 (93)
159 cd07363 45_DOPA_Dioxygenase Th 22.1 2.9E+02 0.0062 27.0 6.9 69 354-432 78-148 (253)
160 COG5304 Uncharacterized protei 21.7 35 0.00075 28.2 0.3 23 355-377 59-81 (92)
161 PRK01018 50S ribosomal protein 21.6 4E+02 0.0087 22.2 6.8 22 355-376 43-64 (99)
162 PRK13932 stationary phase surv 21.3 1E+02 0.0022 30.6 3.5 44 385-437 112-156 (257)
163 COG4187 RocB Arginine degradat 21.2 84 0.0018 33.7 3.1 27 36-65 66-92 (553)
164 TIGR00853 pts-lac PTS system, 20.8 2.7E+02 0.0059 23.0 5.6 47 355-409 16-62 (95)
No 1
>KOG2596 consensus Aminopeptidase I zinc metalloprotease (M18) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-102 Score=771.10 Aligned_cols=438 Identities=60% Similarity=0.973 Sum_probs=401.9
Q ss_pred chhhhcCCCcc-eeccccceEEee--eEEEEccCCeEEEEEeCCcccCCCCeEEEEeecCCCceEeecCccccCCCeeEE
Q 013257 5 GVCKQWGINRF-QREKIGNWKLAR--DTFFTRNHSTIIAFAVGKKYVAGNGFHVVGAHTDSPCLKLKPVSKVTKGGYLEV 81 (447)
Q Consensus 5 ~~~~~~~~sG~-E~~~~~~w~l~~--~~~~d~~~gnlia~~~g~~~~~~~~~vmi~AH~De~g~~Vk~~~~i~~~G~~~l 81 (447)
++-+++-..|| |+.|++.|.++| +||++|++++|+||.+|++|.+++|+-+|+||+|+||++|||++.....||+++
T Consensus 37 e~k~~Ll~agF~~LsE~~~W~iepg~kyf~tRN~S~iiAFavG~ky~pgnGf~iigaHtDSpcLrlKP~Sk~s~~gylqV 116 (479)
T KOG2596|consen 37 EFKERLLKAGFKELSEKSDWQIEPGGKYFVTRNGSSIIAFAVGGKYVPGNGFSIIGAHTDSPCLRLKPVSKRSAEGYLQV 116 (479)
T ss_pred HHHHHHHHccchhcccccCcccCCCceEEEEccCceEEEEeccCcccCCCceeEEEecCCCcceeecccccccccceEEE
Confidence 34455556889 899999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCcccccccceeccccEEEEecCCCCCCCceeeeeeeCCCeEEecCCCcccccccccCCCCCCCccceeeeEec
Q 013257 82 GVQTYGGGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRIDEPIMRIPTLAIHLDRNVNSDGFKVNTQSHLVPILAT 161 (447)
Q Consensus 82 ~v~~yGG~~~~tw~dr~L~lagrV~i~~~~~G~~~~~~klv~~~~~~gvI~~laiHl~~~~~~~~~~~~~~~~l~idiG~ 161 (447)
.|++|||.+|+|||||+|++||||.++...+| +++++||++++|+..||+|||||++..| ++|++|.+++|.|++|.
T Consensus 117 gV~tYGGgiw~tWfDRDLsvaGRvivk~~~~~--~~~~~LV~v~rPllrIPtLAiHldr~~n-~~f~pn~EtqlvPil~t 193 (479)
T KOG2596|consen 117 GVETYGGGIWHTWFDRDLSVAGRVIVKEAGDG--KLIHRLVDVKRPLLRIPTLAIHLDRDVN-EGFKPNTETQLVPILGT 193 (479)
T ss_pred EEeecCCccchhhccccccccceEEEEecCCc--ceeeeeecCCCceeeccceeeecCCccc-ccCCCCccceeeeeecc
Confidence 99999999999999999999999999963245 7999999999999999999999999988 68999999999999999
Q ss_pred cchhhhccccCCCCCCcc--ccccccchhHHHHHHHHHcCCCCCCeeeeeeeeeecCCceeeccCCceEeecccchhhhH
Q 013257 162 SLKEELNKVVTDSPNERT--DTYSSKHHSHLLQMIASQIGCRPDDICDFELQACDTQPSIVAGIKKEFIFSGRLDNLCMS 239 (447)
Q Consensus 162 ~s~e~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~a~~~gV~~gdiv~~d~~~~~~~~~~~~Gl~~~~i~~kalDnr~g~ 239 (447)
...++++.+-.+++++++ .....+|.+.|+.++|+++|+++.||++||+.++|.|+++++|++++||+++|||||+||
T Consensus 194 ~~~~~~~~~e~~~~~~~~~~~~~~~~Hhp~Ll~liak~lg~~~edIvd~eL~l~Dtq~a~lgG~~~eFiFs~RLDnl~~s 273 (479)
T KOG2596|consen 194 AIPAEEEKTEKPSDDGDKPRNSSKGKHHPVLLGLIAKELGCTPEDIVDFELILYDTQKATLGGANDEFIFSPRLDNLLSS 273 (479)
T ss_pred cCchhhhcCCCCCCCCccccccccccccHHHHHHHHHHhCCCHHHhhheeeeeecCCchhhcCcccceeecccccchhhH
Confidence 875432222111222221 346677999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcccccccCCcchhhHHHHHhhccCCChHHHHHhhhcceEEEEecC
Q 013257 240 FCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQGAGSPAMLDALSRITNSFCSNSKLIEKAIQRSFLVSADMA 319 (447)
Q Consensus 240 ~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~gA~~~~~pd~l~ri~~~~~~~~~~~~~~~~~s~aIs~Dv~ 319 (447)
|+++.||..+.+.+ ++++.+.+.+++.||+|||||.+|+||.+.|++++|+||...++...-.+.+++++||+||.||+
T Consensus 274 F~al~aLi~s~~~~-~l~~e~~ir~valfDnEEvGS~SaQGA~s~~l~~vl~Riss~~~~~~~~~~~ai~kSflvSADma 352 (479)
T KOG2596|consen 274 FCALQALIDSAEGE-SLENESGIRMVALFDNEEVGSDSAQGAGSPFLESVLRRISSLFGSFPTAFEEAIAKSFLVSADMA 352 (479)
T ss_pred HHHHHHHHHHhcCC-CcccCCCeEEEEeccchhhcchhhccCCCccHHHHHHHHHHhcCCCchHHHHHhhhheeeehhhh
Confidence 99999998876421 34455677899999999999999999999999999999999888877889999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCccCCccEEEEcCCCccccCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCc
Q 013257 320 HALHPNYMDKHEDNHQPKLHGGLVIKHNANQRYATNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIR 399 (447)
Q Consensus 320 ha~~P~~~~~~~~~~~~~LG~Gp~ik~~~~~~~~t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~ 399 (447)
||+||||+++|+.+|+|.|++||+||+++||||+||....++++++|+++++|+|.++.|||++||+|||||.+++.|++
T Consensus 353 Ha~hPNy~~kheenH~P~~h~G~vik~naNqryaTn~v~~~l~kevA~~~~vplQ~fvVrNdspcGsTIGPiLAS~~G~R 432 (479)
T KOG2596|consen 353 HAVHPNYSDKHEENHRPLLHGGPVIKVNANQRYATNSVGSALVKEVAELAKVPLQDFVVRNDSPCGSTIGPILASKTGIR 432 (479)
T ss_pred hhcCCCchhhhhhccCCccCCCceEEEcCCcceeccchhHHHHHHHHHHcCCCceeEEEecCCCCccccchhhhhhcCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEechhhhccchHHhhcCHHHHHHHHHHHHHHHHHhhhhhcccccC
Q 013257 400 TVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQEFSELDAKIKVD 446 (447)
Q Consensus 400 t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f~~~~~~~~~~~~~~ 446 (447)
|+|+|+|+++|||+|||++.+|++..++|+++||++|..++.++.+|
T Consensus 433 TlDlG~pqLsMHSiRe~~gs~dv~~~~~lFk~Ff~~f~sv~~~~~vd 479 (479)
T KOG2596|consen 433 TLDLGIPQLSMHSIREMCGSKDVEQAVKLFKGFFERFSSVESKLVVD 479 (479)
T ss_pred eeecCchhhhhHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHhhccC
Confidence 99999999999999999999999999999999999999999988775
No 2
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=100.00 E-value=3.3e-99 Score=791.80 Aligned_cols=430 Identities=54% Similarity=0.917 Sum_probs=385.2
Q ss_pred chhhhcCCCcc-eeccccceEEee--eEEEEccCCeEEEEEeCCccc-CCCCeEEEEeecCCCceEeecCccccCCCeeE
Q 013257 5 GVCKQWGINRF-QREKIGNWKLAR--DTFFTRNHSTIIAFAVGKKYV-AGNGFHVVGAHTDSPCLKLKPVSKVTKGGYLE 80 (447)
Q Consensus 5 ~~~~~~~~sG~-E~~~~~~w~l~~--~~~~d~~~gnlia~~~g~~~~-~~~~~vmi~AH~De~g~~Vk~~~~i~~~G~~~ 80 (447)
.+.+.+...|| |+++++.|+++| +||+.|++++|+||.+|+++. +++|++|++||+|+|||+|||+|..+.+||.+
T Consensus 28 ~~~~~L~~~GF~~l~e~~~w~l~~g~kyyv~r~~ssl~Af~vg~~~~~~~~g~~ivgaHtDsP~lklKp~~~~~~~g~~~ 107 (465)
T PTZ00371 28 ELKERLKKSGFKQLNEGENWKLEKGGKYYLTRNNSTIVAFTVGKKFDAPNGGFKIVGAHTDSPCLRLKPNSKVTKEGFQQ 107 (465)
T ss_pred HHHHHHHHCcCEEccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCCeEEEEEeccCCCccccCCCcccCCCEEE
Confidence 34455556888 899999999988 999999988999999998753 45789999999999999999999999999999
Q ss_pred EeEEEeCCCcccccccceeccccEEEEecCCCCCCCceeeeeeeCCCeEEecCCCcccccccccCCCCCCCccceeeeEe
Q 013257 81 VGVQTYGGGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRIDEPIMRIPTLAIHLDRNVNSDGFKVNTQSHLVPILA 160 (447)
Q Consensus 81 l~v~~yGG~~~~tw~dr~L~lagrV~i~~~~~G~~~~~~klv~~~~~~gvI~~laiHl~~~~~~~~~~~~~~~~l~idiG 160 (447)
|+|++|||++|+||+||+|++||||.+++ +| ++.+|||++++|+++||+|||||+++.+++++++|+++||.|++|
T Consensus 108 l~ve~YGG~l~~tW~dR~L~laGrV~~~~--~g--~~~~~lv~~~~pv~~IP~LaiHl~r~~n~~~~~~n~~~~l~pi~~ 183 (465)
T PTZ00371 108 VGVETYGGGLWHTWFDRDLGLAGRVVYKK--DG--KLEEKLIRINKPILRIPNLAIHLQTSTERESFKPNKENHLKPIIS 183 (465)
T ss_pred EeeEECCChhhccccCCCceeeeEEEEee--CC--eEEEEEEeCCCCeEECCchhhhcCccccccCCCcCccCcceeEEe
Confidence 99999999999999999999999999996 45 689999999999999999999999987744789999999999998
Q ss_pred ccchhhhccccCCCCCCccccccccchhHHHHHHHHHcCCCCCCeeeeeeeeeecCCceeeccCCceEeecccchhhhHH
Q 013257 161 TSLKEELNKVVTDSPNERTDTYSSKHHSHLLQMIASQIGCRPDDICDFELQACDTQPSIVAGIKKEFIFSGRLDNLCMSF 240 (447)
Q Consensus 161 ~~s~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~gV~~gdiv~~d~~~~~~~~~~~~Gl~~~~i~~kalDnr~g~~ 240 (447)
....++.. +++++.+...+|+..+++++|+++||++||+++||++++|.++++++|++++||.|+|||||+|||
T Consensus 184 ~~~~~~~~------~~~~~~~~~~~~~~~ll~~la~~~gv~~~Div~~dL~l~d~~~~~~~G~~~e~i~s~rlDnr~~~~ 257 (465)
T PTZ00371 184 TEVYEQLN------GKQDNDNSNNNHSAPLLKLIAKELGCSVEDIVDFDLCLMDTQPSCFGGLNEEFISSPRLDNLGSSF 257 (465)
T ss_pred cCcccccc------cccccccccccchHHHHHHHHHHcCCCCCceEEEEEEeecCCcceEeecCCCeEEEecchhHHHHH
Confidence 76432100 001111234567888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcccccccCCcchhhHHHHHhhccCCC----hHHHHHhhhcceEEEE
Q 013257 241 CSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQGAGSPAMLDALSRITNSFCSN----SKLIEKAIQRSFLVSA 316 (447)
Q Consensus 241 ~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~gA~~~~~pd~l~ri~~~~~~~----~~~~~~~~~~s~aIs~ 316 (447)
+++++|+++..... ..+..+.++++||||||||+|++||++.|+||+|+||..+++.+ ++.+.+++++|++||+
T Consensus 258 ~~l~al~~~~~~~~--~~~~~~~v~~~~d~EEVGs~ga~GA~s~~l~d~l~ri~~~~~~~~~~~~~~~~~~~~~S~~IS~ 335 (465)
T PTZ00371 258 CAFKALTEAVESLG--ENSSNIRMVCLFDHEEVGSSSSQGAGSSLLPDTIERILSSLSASNNSSDDSFAKLMARSFLLSV 335 (465)
T ss_pred HHHHHHHhcccccc--CCCCceEEEEEECCcCCCCCcchhccccccHHHHHHHHHhhccccccchhHHHHHHhccEEEEE
Confidence 99999998753100 00234556677999999999999999999999999999998865 7899999999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCccCCccEEEEcCCCccccCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCC
Q 013257 317 DMAHALHPNYMDKHEDNHQPKLHGGLVIKHNANQRYATNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGV 396 (447)
Q Consensus 317 Dv~ha~~P~~~~~~~~~~~~~LG~Gp~ik~~~~~~~~t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~ 396 (447)
||+||.||||+++++++|.+.||+||+||++++++|++|+.+.++++++|+++|||||.++.|+|++||||+|+|++++.
T Consensus 336 DvahA~hPn~~~~~d~~~~~~lg~GpvIk~~a~~~y~td~~~~a~i~~la~~~~Ip~Q~~~~~~d~~~GsTig~i~~s~~ 415 (465)
T PTZ00371 336 DMAHAVHPNYPEKHQANHRPKFHEGIVIKYNANQRYATNGVTASLLKAIAKKANIPIQEFVVKNDSPCGSTIGPILSSNL 415 (465)
T ss_pred ecccccCCCCccccCCcCceeCCCCcEEEEeCCCCcccCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEechhhhccchHHhhcCHHHHHHHHHHHHHHHHHhhhhhcccccC
Q 013257 397 GIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQEFSELDAKIKVD 446 (447)
Q Consensus 397 Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f~~~~~~~~~~~~~~ 446 (447)
||||+|||+|+|||||++||++++|++++++|+++|++.|..++..+.|+
T Consensus 416 Gi~tvDiGiP~l~MHS~rE~~~~~D~~~~~~l~~af~~~~~~~~~~~~~~ 465 (465)
T PTZ00371 416 GIRTVDIGIPQLAMHSIREMCGVVDIYYLVKLIKAFFTNYSKVDGSSLLD 465 (465)
T ss_pred CCcEEEechhhcccccHHHHccHHHHHHHHHHHHHHHHhhhhhcceEeeC
Confidence 99999999999999999999999999999999999999999988777653
No 3
>PRK02813 putative aminopeptidase 2; Provisional
Probab=100.00 E-value=3e-97 Score=770.47 Aligned_cols=397 Identities=48% Similarity=0.808 Sum_probs=369.3
Q ss_pred hhhhcCCCcc-eeccccceEEee--eEEEEccCCeEEEEEeCCcccCCCCeEEEEeecCCCceEeecCccccCCCeeEEe
Q 013257 6 VCKQWGINRF-QREKIGNWKLAR--DTFFTRNHSTIIAFAVGKKYVAGNGFHVVGAHTDSPCLKLKPVSKVTKGGYLEVG 82 (447)
Q Consensus 6 ~~~~~~~sG~-E~~~~~~w~l~~--~~~~d~~~gnlia~~~g~~~~~~~~~vmi~AH~De~g~~Vk~~~~i~~~G~~~l~ 82 (447)
+.+.|-..|| |+++++.|+++| +||+.|++++|+||.+|+++.+++|++|++||+|||||+|||+|.++++||++|+
T Consensus 28 ~~~~L~~~Gf~~l~e~~~w~l~~g~kyy~~r~~~sliAf~vg~~~~~~~g~~iv~aH~DsP~l~lKp~~~~~~~g~~~l~ 107 (428)
T PRK02813 28 VAQRLEAAGFTELDETDAWKLEPGGRYYVVRNGSSLIAFRVGEGAPAETGFRIVGAHTDSPGLRVKPNPDTGEAGYLQLN 107 (428)
T ss_pred HHHHHHHcCCeeccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCeEEEEEeccCCCeeeccCCcccCCCEEEEe
Confidence 3445556888 899999999988 9999999889999999987654468999999999999999999999999999999
Q ss_pred EEEeCCCcccccccceeccccEEEEecCCCCCCCceeeeeeeCCCeEEecCCCcccccccccCCCCCCCccceeeeEecc
Q 013257 83 VQTYGGGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRIDEPIMRIPTLAIHLDRNVNSDGFKVNTQSHLVPILATS 162 (447)
Q Consensus 83 v~~yGG~~~~tw~dr~L~lagrV~i~~~~~G~~~~~~klv~~~~~~gvI~~laiHl~~~~~~~~~~~~~~~~l~idiG~~ 162 (447)
|++|||++|+||+||+|++||||.+++. + ++..||+++++|+++||+|||||+++.+ +++++|++.+|.|+++..
T Consensus 108 ve~YGG~~~~tW~Dr~L~laGrV~~~~~--~--~~~~~l~~~~~pv~~Ip~LaiHL~~~~~-~g~~~n~~~~~~Pi~~~~ 182 (428)
T PRK02813 108 VEVYGGPILNTWLDRDLSLAGRVVLRDG--N--KPESRLVNIDRPILRIPNLAIHLNREVN-EGLKLNPQKHLLPILLNG 182 (428)
T ss_pred eEECCCchhccccCCCcccceEEEEecC--C--EeEEEEEeCCCCeEEeCcchhccCcccc-cccCcccccCCcceeccc
Confidence 9999999999999999999999999974 3 6889999999999999999999999877 688999999999996431
Q ss_pred chhhhccccCCCCCCccccccccchhHHHHHHHHHcCCCCCCeeeeeeeeeecCCceeeccCCceEeecccchhhhHHHH
Q 013257 163 LKEELNKVVTDSPNERTDTYSSKHHSHLLQMIASQIGCRPDDICDFELQACDTQPSIVAGIKKEFIFSGRLDNLCMSFCS 242 (447)
Q Consensus 163 s~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~gV~~gdiv~~d~~~~~~~~~~~~Gl~~~~i~~kalDnr~g~~~~ 242 (447)
. ..++..+++++++++||++||+++||++|++.+|++++|+++++|.|+|||||+|||++
T Consensus 183 ~--------------------~~~~~~~l~~la~~~gi~~~Div~~dl~~~d~~~~~~~G~~~e~i~s~~lDnr~~~~~~ 242 (428)
T PRK02813 183 V--------------------GEKEGDFLELLAEELGVDADDILDFDLFLYDTQPGALIGANGEFISSGRLDNLSSCHAG 242 (428)
T ss_pred c--------------------cccchHHHHHHHHHcCCCcCCEEEEEEEEEEcccceeeccCCCEEEEecchhHHHHHHH
Confidence 1 12345689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCCCCceEEEEEEeccccCcccccccCCcchhhHHHHHhhccCCChHHHHHhhhcceEEEEecCCCC
Q 013257 243 LKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQGAGSPAMLDALSRITNSFCSNSKLIEKAIQRSFLVSADMAHAL 322 (447)
Q Consensus 243 leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~gA~~~~~pd~l~ri~~~~~~~~~~~~~~~~~s~aIs~Dv~ha~ 322 (447)
+++|+++.. +.+.++++||||||||+|++||.+.|++++|+||..+++.+++.+.+.++||++||+||+||.
T Consensus 243 l~al~~~~~--------~~~~~~~~~d~EEVGs~~~~GA~s~~l~~~l~ri~~~~~~~~~~~~~~i~~s~~IS~DvahA~ 314 (428)
T PRK02813 243 LEALLAAAS--------DATNVLAAFDHEEVGSATKQGADSPFLEDVLERIVLALGGDREDFLRALARSFLISADMAHAV 314 (428)
T ss_pred HHHHHhcCC--------CCeEEEEEEecCccCCCCCcccCchhHHHHHHHHHHhhcCchHHHHHhhCCCeEEEEeccCCC
Confidence 999988641 356899999999999999999999999999999999988888899999999999999999999
Q ss_pred CCCCCCCCCCCCCCccCCccEEEEcCCCccccCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEE
Q 013257 323 HPNYMDKHEDNHQPKLHGGLVIKHNANQRYATNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVD 402 (447)
Q Consensus 323 ~P~~~~~~~~~~~~~LG~Gp~ik~~~~~~~~t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~d 402 (447)
||||+++++++|.++||+||+||++++++|++|+.+.++++++|++++||||+++.|+|++||||+|++++++.||||+|
T Consensus 315 hPn~~~~~~~~~~~~lg~GpvIk~~~~~~y~t~~~~~a~~~~ia~~~~Ip~Q~~v~~~d~~gGstig~i~~s~~Gi~tvd 394 (428)
T PRK02813 315 HPNYPEKHDPTHRPLLNKGPVIKINANQRYATDAESAAVFKLLCEKAGVPYQEFVNRSDMPCGSTIGPITAARLGIRTVD 394 (428)
T ss_pred CCCCCCccCcccCccCCcCCeEEECCCCCcccCHHHHHHHHHHHHHcCCCEEEEEecCCCCCccHHHHHHHhCCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echhhhccchHHhhcCHHHHHHHHHHHHHHHHH
Q 013257 403 VGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQE 435 (447)
Q Consensus 403 igiP~ryMHS~~E~~~~~Di~~~~~ll~~f~~~ 435 (447)
||+|+|||||++||++++|++++++|+++|++.
T Consensus 395 iGiP~l~MHS~~E~~~~~D~~~~~~l~~~f~~~ 427 (428)
T PRK02813 395 VGAPMLAMHSARELAGVKDHAYLIKALTAFFSG 427 (428)
T ss_pred eChhhcccccHHHHccHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999864
No 4
>PF02127 Peptidase_M18: Aminopeptidase I zinc metalloprotease (M18); InterPro: IPR001948 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M18, (clan MH). The proteins have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal aminoacid, usually neutral or hydrophobic, from a polypeptide []. The type example is aminopeptidase I from Saccharomyces cerevisiae (Baker's yeast), the sequence of which has been deduced, and the mature protein shown to consist of 469 amino acids []. A 45-residue presequence contains both positively- and negatively-charged and hydrophobic residues, which could be arranged in an N-terminal amphiphilic alpha-helix []. The presequence differs from signal sequences that direct proteins across bacterial plasma membranes and endoplasmic reticulum or into mitochondria. It is unclear how this unique presequence targets aminopeptidase I to yeast vacuoles, and how this sorting utilises classical protein secretory pathways [].; GO: 0004177 aminopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1Y7E_A 2GLJ_R 4DYO_A 2IJZ_B 3VAT_A 3VAR_A 2GLF_B.
Probab=100.00 E-value=4.4e-98 Score=774.93 Aligned_cols=415 Identities=50% Similarity=0.853 Sum_probs=349.2
Q ss_pred hhhhcCCCcc-eeccccceEEee--eEEEEccCCeEEEEEeCCcccCCCCeEEEEeecCCCceEeecCccccCCCeeEEe
Q 013257 6 VCKQWGINRF-QREKIGNWKLAR--DTFFTRNHSTIIAFAVGKKYVAGNGFHVVGAHTDSPCLKLKPVSKVTKGGYLEVG 82 (447)
Q Consensus 6 ~~~~~~~sG~-E~~~~~~w~l~~--~~~~d~~~gnlia~~~g~~~~~~~~~vmi~AH~De~g~~Vk~~~~i~~~G~~~l~ 82 (447)
+.+.|...|| |+++.+.|.++| +||+.|++++||||.+|+++++++|+.|++||+|+|||+|||+|.++++||.+|+
T Consensus 15 ~~~~L~~~GF~eL~e~~~W~l~~ggkyy~~r~~ssliAF~vg~~~~~~~G~~ivgaHtDSP~lklKp~~~~~~~g~~~l~ 94 (432)
T PF02127_consen 15 AKERLEKAGFTELDETEKWDLKPGGKYYVTRNGSSLIAFAVGGKFPPGNGFRIVGAHTDSPCLKLKPNPEYESDGYAQLN 94 (432)
T ss_dssp HHHHHHHTTHEESTTTSSTT--TTSEEEEEETTTEEEEEEEETTS-GCG-EEEEEEE---SEEEEEEEEEEEETTEEEEE
T ss_pred HHHHHHHcCCeEcccccccCCCCCCEEEEEeCCCEEEEEEeCCcCCcccceEEEEEecCCCCeeecCCCccccCCEEEEe
Confidence 3444556888 899999999999 9999999889999999998766788999999999999999999999999999999
Q ss_pred EEEeCCCcccccccceeccccEEEEecCCCCCCCceeeeeeeCCCeEEecCCCcccccccccCCCCCCCccceeeeEecc
Q 013257 83 VQTYGGGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRIDEPIMRIPTLAIHLDRNVNSDGFKVNTQSHLVPILATS 162 (447)
Q Consensus 83 v~~yGG~~~~tw~dr~L~lagrV~i~~~~~G~~~~~~klv~~~~~~gvI~~laiHl~~~~~~~~~~~~~~~~l~idiG~~ 162 (447)
|++|||++|+||+||+|++||||.++++++| ++.++++++++|+++||+|||||+++.+ +++++|++.||.|+++..
T Consensus 95 ve~YGG~i~~tW~DR~L~laGrV~~k~~~~~--~~~~~lv~~~~pv~~IP~LAiHL~r~~n-~~~~~n~q~~l~pi~~~~ 171 (432)
T PF02127_consen 95 VEVYGGGIWHTWFDRPLSLAGRVVVKDGDEG--KPESKLVDIDRPVAIIPNLAIHLDREVN-EGFKLNKQKHLEPILGLS 171 (432)
T ss_dssp EEEESS--GGGGTTS-EEEEEEEEETTTTTE--EEEEESCSTTS-BBBSS---GGGSTTTT-TS-CTTTSTTSGGEEEEC
T ss_pred eEcCCCcccccccCCccceeEEEEEeeCCCC--ceeEEEEeCCCCEEEeCCchhccccccc-ccCCccccccccCeEeec
Confidence 9999999999999999999999999975123 6789999999999999999999999876 468999999999999997
Q ss_pred chhhhccccCCCCCCccccccccchhHHHHHHHHHcCCCCCCeeeeeeeeeecCCceeeccCCceEeecccchhhhHHHH
Q 013257 163 LKEELNKVVTDSPNERTDTYSSKHHSHLLQMIASQIGCRPDDICDFELQACDTQPSIVAGIKKEFIFSGRLDNLCMSFCS 242 (447)
Q Consensus 163 s~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~gV~~gdiv~~d~~~~~~~~~~~~Gl~~~~i~~kalDnr~g~~~~ 242 (447)
.....+. ++ ++ -+++|+..+++++++++||++.||++||++++|.||++++|++++||.|+|||||+|||++
T Consensus 172 ~~~~~~~-----~~-~~--~~~~~~~~ll~~la~~~gi~~~dIl~~DL~l~d~~~~~~~G~~~efI~s~rlDnl~s~~a~ 243 (432)
T PF02127_consen 172 GESSLPE-----DD-EE--DKNRHKPSLLKLLAEELGIEEEDILDFDLYLYDAQPARIVGLDEEFISSPRLDNLASCYAA 243 (432)
T ss_dssp CHHHHHT-----TT-SS--SSSHHHHHHHHHHHHHHT--GGGCCCEEEEEEEES--EEETTTTSEEEETTHHHHHHHHHH
T ss_pred ccccccc-----cc-cc--cccchhHHHHHHHHHHhCCCHHHhccceEEEEecCCCeEecCchhhhhccCcCcHHHHHHH
Confidence 6211000 11 11 1467999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCCCCceEEEEEEeccccCcccccccCCcchhhHHHHHhhccCCChHHHHHhhhcceEEEEecCCCC
Q 013257 243 LKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQGAGSPAMLDALSRITNSFCSNSKLIEKAIQRSFLVSADMAHAL 322 (447)
Q Consensus 243 leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~gA~~~~~pd~l~ri~~~~~~~~~~~~~~~~~s~aIs~Dv~ha~ 322 (447)
++||.+..+. .+.+.+.+.++++||+|||||.+.+||.|.|++++|+||..+++.+.+.+.+.+++|++||+||+||.
T Consensus 244 l~Al~~~~~~--~~~~~~~~~v~~~fD~EEiGS~s~~GA~S~fl~~~l~ri~~~~~~~~~~~~~~l~~S~~lSaD~aHa~ 321 (432)
T PF02127_consen 244 LEALIDSSND--SLEPEDGTNVVVLFDNEEIGSESRQGADSPFLEDVLERILAALGGSREFYRRILANSFLLSADVAHAV 321 (432)
T ss_dssp HHHHHHHTSS--CCCCSSSEEEEEEESSGGGTSTSTTSTTSTHHHHHHHHHHHHCSTTTHHHHHHHHC-EEEEE--EEB-
T ss_pred HHHHHhhhcc--cccccCceEEEEEEcccccCCCccccccchHHHHHHHHHHHhcCCCHHHHHHHhhcCcEECcCccccc
Confidence 9999988532 11223577899999999999999999999999999999999999877888888999999999999999
Q ss_pred CCCCCCCCCCCCCCccCCccEEEEcCCCccccCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEE
Q 013257 323 HPNYMDKHEDNHQPKLHGGLVIKHNANQRYATNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVD 402 (447)
Q Consensus 323 ~P~~~~~~~~~~~~~LG~Gp~ik~~~~~~~~t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~d 402 (447)
||||+++|+++|.+.||+||+||++++++|+||....++++++|++++||||.++.|+|++||||+||+.+++.||+|+|
T Consensus 322 HPny~~~~d~~~~p~l~~G~viK~~a~q~yatd~~~~a~~~~i~~~~~ip~Q~f~~r~d~~~GsTiGpi~sa~~gi~tvD 401 (432)
T PF02127_consen 322 HPNYPEKHDPNNQPLLNKGPVIKKNANQRYATDAASAAVFREICEKAGIPWQEFVNRSDDPGGSTIGPILSARLGIRTVD 401 (432)
T ss_dssp BTTSGGGS-TTTSBSTTS-EEEESETTTTSSS-HHHHHHHHHHHHHHH--EEEEESSSTSSS--HHHHHHHHCCTSEEEE
T ss_pred CCCcchhccccCCCcCCcccEEEEeCCCCcccCHHHHHHHHHHHHHcCCCeEEEEecCCCCCCccHHHHHHHhcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echhhhccchHHhhcCHHHHHHHHHHHHHHH
Q 013257 403 VGAPQLSMHSIREMCAVDDVKHSYEHFKAFF 433 (447)
Q Consensus 403 igiP~ryMHS~~E~~~~~Di~~~~~ll~~f~ 433 (447)
||+|+++|||+|||++..|++++++++++||
T Consensus 402 iG~P~LsMHS~rE~~g~~D~~~~~~~~~aFf 432 (432)
T PF02127_consen 402 IGIPQLSMHSIRETAGKKDIYYLYKAFKAFF 432 (432)
T ss_dssp EE-EEESTTSSSEEEEHHHHHHHHHHHHHHC
T ss_pred echhhhhcccHHHHhccccHHHHHHHHHHhC
Confidence 9999999999999999999999999999996
No 5
>COG1362 LAP4 Aspartyl aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-96 Score=736.90 Aligned_cols=403 Identities=45% Similarity=0.757 Sum_probs=378.6
Q ss_pred hhhhcCCCcc-eeccccceEEee--eEEEEccCCeEEEEEeCCcccCCCCeEEEEeecCCCceEeecCccccCCCeeEEe
Q 013257 6 VCKQWGINRF-QREKIGNWKLAR--DTFFTRNHSTIIAFAVGKKYVAGNGFHVVGAHTDSPCLKLKPVSKVTKGGYLEVG 82 (447)
Q Consensus 6 ~~~~~~~sG~-E~~~~~~w~l~~--~~~~d~~~gnlia~~~g~~~~~~~~~vmi~AH~De~g~~Vk~~~~i~~~G~~~l~ 82 (447)
+.+.+-.+|| |+++++.|+.++ +||+.|++++||||.+|++|.+++|+.|++||+|||+|++||+|.+...||.++.
T Consensus 30 i~~~L~~~Gf~~l~e~~~w~~~~ggkyf~~r~gssliAf~ig~~~~~~~gf~IigaHtDSP~l~lKp~p~~~~~g~~~~~ 109 (437)
T COG1362 30 IAERLLKAGFRELEEKDAWKDKPGGKYFVTRNGSSLIAFIIGKKWKLESGFRIIGAHTDSPRLRLKPNPDIEVEGYLQLG 109 (437)
T ss_pred HHHHHHHcCchhhhhhhcccccCCCeEEEEcCCceEEEEEecCCCCCCCCeEEEEeecCCCCcccCCCchhhhcceeEEe
Confidence 3445556899 999999998666 9999999879999999999877889999999999999999999999999999999
Q ss_pred EEEeCCCcccccccceeccccEEEEecCCCCCCCceeeeeeeCCCeEEecCCCcccccccccCCCCCCCccceeeeEecc
Q 013257 83 VQTYGGGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRIDEPIMRIPTLAIHLDRNVNSDGFKVNTQSHLVPILATS 162 (447)
Q Consensus 83 v~~yGG~~~~tw~dr~L~lagrV~i~~~~~G~~~~~~klv~~~~~~gvI~~laiHl~~~~~~~~~~~~~~~~l~idiG~~ 162 (447)
+++|||++.++|+||+|+++|||.+++. .+ +.+++++++++|+++||+|+|||+++.+ +++++|+++++.|++|..
T Consensus 110 ~e~YGG~~~~~WldrdLsiaGrv~~k~~-~~--~~~~~lv~~~~Pi~~IP~LaiHL~r~~n-~~~~~n~~~~l~piig~~ 185 (437)
T COG1362 110 TEVYGGIILYTWLDRDLSIAGRVFVKDG-TG--KIISRLVDIDDPILRIPDLAIHLDRDVN-KSFEINPQENLNPIIGVI 185 (437)
T ss_pred eEecCCeeecceecCccceeeEEEEecC-CC--cceeeeccCCCCeeecCcchhhcCcchh-ccCccCccccceeeEecc
Confidence 9999999999999999999999999943 34 6789999999999999999999999987 678999999999999998
Q ss_pred chhhhccccCCCCCCccccccccchhHHHHHHHHHcCCCCCCeeeeeeeeeecCCceeeccCCceEeecccchhhhHHHH
Q 013257 163 LKEELNKVVTDSPNERTDTYSSKHHSHLLQMIASQIGCRPDDICDFELQACDTQPSIVAGIKKEFIFSGRLDNLCMSFCS 242 (447)
Q Consensus 163 s~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~gV~~gdiv~~d~~~~~~~~~~~~Gl~~~~i~~kalDnr~g~~~~ 242 (447)
..+ ..++|...+++++++++||.+.|+|++|+.++++++++..|++++||+++|||||+|||+.
T Consensus 186 ~~~----------------~~~~~~~~ll~~iae~~~v~~ed~vs~dL~~~~~~~a~~~G~~~efi~a~rlDn~~~~~a~ 249 (437)
T COG1362 186 PGE----------------EKNKVKASLLKLLAEQLGVEEEDFVSFDLILVDAQKARLVGADGEFLSAPRLDNLICCHAG 249 (437)
T ss_pred Ccc----------------cccchhHHHHHHHHHHhCCcHhhhhhceEEEecCCcceeeccchhhhccCCccchHHHHHH
Confidence 632 1245888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCCCCceEEEEEEeccccCcccccccCCcchhhHHHHHhhccCCChHHHHHhhhcceEEEEecCCCC
Q 013257 243 LKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQGAGSPAMLDALSRITNSFCSNSKLIEKAIQRSFLVSADMAHAL 322 (447)
Q Consensus 243 leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~gA~~~~~pd~l~ri~~~~~~~~~~~~~~~~~s~aIs~Dv~ha~ 322 (447)
++||..++. .+.+.++++||+|||||.|++||.|+|++++|+||..+++.+.++..+++.+|+.||.||+||.
T Consensus 250 m~AL~~~~~-------~~~~~v~~~fD~EEIGS~s~~GAds~fL~~vLeri~~a~~~~~~~~~~~l~nS~~iSaD~ahai 322 (437)
T COG1362 250 MEALLAAAN-------SDKTCVLALFDHEEIGSLSAQGADSPFLENVLERIILALGGSRDDHLRALANSFLISADVAHAI 322 (437)
T ss_pred HHHHHhccC-------CCCceEEEEechhhcccccccCcCchhHHHHHHHHHHHccCChHHHHHHHhhceeeehhhHhhc
Confidence 999998643 3567899999999999999999999999999999999999888887889999999999999999
Q ss_pred CCCCCCCCCCCCCCccCCccEEEEcCCCccccCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEE
Q 013257 323 HPNYMDKHEDNHQPKLHGGLVIKHNANQRYATNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVD 402 (447)
Q Consensus 323 ~P~~~~~~~~~~~~~LG~Gp~ik~~~~~~~~t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~d 402 (447)
||||+++|+++|.|.||+||+||+++|+||+||+...++++++|++++||+|.++.|+|.+||||+||+.++++||+|+|
T Consensus 323 hPny~~~hd~~n~p~ln~G~vik~~an~ry~td~~~~a~~~~l~~~~~Vp~Q~f~~~~d~~~Gstigpi~aa~tGi~tID 402 (437)
T COG1362 323 HPNYPEKHDPNNAPKLNKGPVIKVNANQRYATDSEGIALLRKLAQKAGVPWQVFVLRNDVPCGSTIGPILAARTGIRTID 402 (437)
T ss_pred CCCCccccCcccCCccCCCceEEecCCCCcccCchHHHHHHHHHHHcCCceEEEEecccCCCCcccchhHHhhcCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echhhhccchHHhhcCHHHHHHHHHHHHHHHHH
Q 013257 403 VGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQE 435 (447)
Q Consensus 403 igiP~ryMHS~~E~~~~~Di~~~~~ll~~f~~~ 435 (447)
||+|+++|||+||+++.+|++.+++++.+||++
T Consensus 403 iG~~~LsMHS~rE~~g~~D~~~~~~~~~aFf~~ 435 (437)
T COG1362 403 IGPALLSMHSIRELSGSADLYEAYKALSAFFEN 435 (437)
T ss_pred cchhhhhhccHHHHcchhHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999986
No 6
>PRK02256 putative aminopeptidase 1; Provisional
Probab=100.00 E-value=6.3e-94 Score=748.65 Aligned_cols=401 Identities=24% Similarity=0.365 Sum_probs=361.3
Q ss_pred hhhhcCCCcc-eeccccceEEee--eEEEEccCCeEEEEEeCCcccCCCCeEEEEeecCCCceEeecCccccCCCeeEEe
Q 013257 6 VCKQWGINRF-QREKIGNWKLAR--DTFFTRNHSTIIAFAVGKKYVAGNGFHVVGAHTDSPCLKLKPVSKVTKGGYLEVG 82 (447)
Q Consensus 6 ~~~~~~~sG~-E~~~~~~w~l~~--~~~~d~~~gnlia~~~g~~~~~~~~~vmi~AH~De~g~~Vk~~~~i~~~G~~~l~ 82 (447)
+.+.|-..|| |+++++ ++++ +||+.|++++||||.+|+++ .++|++|++||+|+|||+|||+|..+++||.+|+
T Consensus 48 ~~~~L~~~GF~el~e~~--~l~~g~kyy~~r~~ssliAf~ig~~~-~~~g~~iv~aHtDsP~lklKP~~~~~~~g~~~l~ 124 (462)
T PRK02256 48 IIELAEEKGFINLEEII--GLKPGDKVYAVNRGKSVALAVIGKEP-LEEGLNIIGAHIDSPRLDLKPNPLYEDEGLALLK 124 (462)
T ss_pred HHHHHHHcCCeeccccc--ccCCCCEEEEEcCCCEEEEEEeCCCC-CCCceEEEEEecCCCCceecCCCccccCCeeEeC
Confidence 3444555788 888888 5556 99999998899999999874 3578999999999999999999999999999999
Q ss_pred EEEeCCCcccccccceeccccEEEEecCCCCCCCceeee-eeeCCCeEEecCCCccccccccc-CCCCCCCccceeeeEe
Q 013257 83 VQTYGGGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKL-VRIDEPIMRIPTLAIHLDRNVNS-DGFKVNTQSHLVPILA 160 (447)
Q Consensus 83 v~~yGG~~~~tw~dr~L~lagrV~i~~~~~G~~~~~~kl-v~~~~~~gvI~~laiHl~~~~~~-~~~~~~~~~~l~idiG 160 (447)
|++|||++|+||+||+|++||||.+++ |. .+..++ +++++|+++||+|||||+++.+. ++.++|+++||.|++|
T Consensus 125 ve~YGG~l~~tW~DRdL~lAGrV~~~~---~~-~~~~~l~~~~~~pi~~IP~LAiHl~r~~n~~~~~~~n~q~~l~pi~~ 200 (462)
T PRK02256 125 THYYGGIKKYQWVAIPLALHGVVVKKD---GT-KVEIVIGEDENDPVFTISDLLPHLAKDQMEKKASEAIEGEKLNILIG 200 (462)
T ss_pred eEecCCcccccccCCCceeeeEEEEec---CC-EEEEEecccCCCCeEEcCchhhhhCchhhhccccccCccCCcceeec
Confidence 999999999999999999999999995 31 366667 78899999999999999998752 3679999999999999
Q ss_pred ccchhhhccccCCCCCCccccccccchhHHHHHHHHHcCCCCCCeeeeeeeeeecCCceeeccCCceEeecccchhhhHH
Q 013257 161 TSLKEELNKVVTDSPNERTDTYSSKHHSHLLQMIASQIGCRPDDICDFELQACDTQPSIVAGIKKEFIFSGRLDNLCMSF 240 (447)
Q Consensus 161 ~~s~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~gV~~gdiv~~d~~~~~~~~~~~~Gl~~~~i~~kalDnr~g~~ 240 (447)
..+.+ ++ + .++|+..|++++|+++||++.||++||++++|.||++++|++++||+|+|||||+|||
T Consensus 201 ~~~~~---------~~--~---~~~~~~~ll~~la~~~~v~~~dI~~~DL~l~d~q~~~~~G~~~efI~s~rLDNr~~~~ 266 (462)
T PRK02256 201 SIPLE---------DE--E---KEKVKLNILKLLNEKYGITEEDFVSAELEVVPAGKARDVGLDRSLIGAYGQDDRVCAY 266 (462)
T ss_pred cCCcc---------cc--c---cccchHHHHHHHHHHhCCCHHHeeeceEEEecCCCcceeccccceeeccccccHHHHH
Confidence 76421 00 0 1246778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcccccccCCcchhhHHHHHhhccCC--ChHHHHHhhhcceEEEEec
Q 013257 241 CSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQGAGSPAMLDALSRITNSFCS--NSKLIEKAIQRSFLVSADM 318 (447)
Q Consensus 241 ~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~gA~~~~~pd~l~ri~~~~~~--~~~~~~~~~~~s~aIs~Dv 318 (447)
+++++|+++.+ ...+.++++||||||||+|++||++.|++++|+||...+++ +++.+.+++++|++||+||
T Consensus 267 ~~leal~~~~~-------~~~~~~~~~~dqEEVGs~ga~gA~s~~l~~~l~Ri~~~~~pd~~~~~~~~~~~~S~~IS~Dv 339 (462)
T PRK02256 267 TSLEALLELEN-------PEKTAVVLLVDKEEIGSEGNTGAQSRFFENFVAELLAKTEGNYSDLKLRRALANSKALSADV 339 (462)
T ss_pred HHHHHHHhccc-------CCCeEEEEEEcccccCCcchhhhcchhHHHHHHHHHHhcCCCcchHHHHHHHhccEEEEEeC
Confidence 99999987642 24578999999999999999999999999999999999885 6789999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCccCCccEEE-E-cCCCcccc---CHHHHHHHHHHHHhCCCCEEEE-EeecCCCCCCChHHHH
Q 013257 319 AHALHPNYMDKHEDNHQPKLHGGLVIK-H-NANQRYAT---NAVTSFVFREVASKHNLPVQDF-VVRNDMACGSTIGPIL 392 (447)
Q Consensus 319 ~ha~~P~~~~~~~~~~~~~LG~Gp~ik-~-~~~~~~~t---~~~~~~~l~~~a~~~~Ip~Q~~-~~r~d~~~G~T~g~i~ 392 (447)
+||.||||+++++.+|.+.||+||+|| + +++++|++ |+.+.++++++|++++||||.+ +.|+|++||||+|++.
T Consensus 340 aha~hPn~~~~~~~~~~~~Lg~GpvIk~~d~~~~~y~t~~~~~~~~~~i~~iA~~~~Ip~Q~~~~~r~d~~~GgTig~~~ 419 (462)
T PRK02256 340 SAAFDPNYPSVHEKQNAAYLGYGVVFTKYTGSRGKYGANDANAEFVAEVRNLFNKNNVVWQTAELGKVDQGGGGTIAKFL 419 (462)
T ss_pred CCCCCCCCCcccCcccCccCCCCcEEEEEcCCCCcccccCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCcChHHHHH
Confidence 999999999999999999999999996 6 58999988 9999999999999999999995 6699999999999888
Q ss_pred hcCCCCcEEEechhhhccchHHhhcCHHHHHHHHHHHHHHHHH
Q 013257 393 ASGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQE 435 (447)
Q Consensus 393 ~a~~Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f~~~ 435 (447)
+ +.||||+|||||+|||||++||++++|++++++|+++|+++
T Consensus 420 s-~~Gi~tvdiGiP~l~MHS~rE~~~~~D~~~~~~ll~~f~~~ 461 (462)
T PRK02256 420 A-NYGMEVIDCGVALLSMHSPFEIASKADIYETYKAYKAFLEE 461 (462)
T ss_pred c-CCCCcEEEechhhhccccHHHHhhHHHHHHHHHHHHHHHhh
Confidence 6 99999999999999999999999999999999999999864
No 7
>PRK09864 putative peptidase; Provisional
Probab=100.00 E-value=9.2e-72 Score=566.16 Aligned_cols=332 Identities=18% Similarity=0.140 Sum_probs=283.5
Q ss_pred hhchhhhcCCCcceeccccceE--Eee---eEEEEccCCeEEEEEeCCcccCCCCeEEEEeecCCCceEeecCccccCCC
Q 013257 3 RRGVCKQWGINRFQREKIGNWK--LAR---DTFFTRNHSTIIAFAVGKKYVAGNGFHVVGAHTDSPCLKLKPVSKVTKGG 77 (447)
Q Consensus 3 ~~~~~~~~~~sG~E~~~~~~w~--l~~---~~~~d~~~gnlia~~~g~~~~~~~~~vmi~AH~De~g~~Vk~~~~i~~~G 77 (447)
.++|++..|+||||.++++.|. +++ ++++|++ ||+||.+ |.+ .+++|++|||||+||||++ |+++|
T Consensus 6 L~~L~~~~g~SG~E~~v~~~l~~~l~~~~dev~~D~~-GNli~~~-g~~----~~kvml~AHmDevG~mV~~---I~~~G 76 (356)
T PRK09864 6 LQQLCEASAVSGDEQEVRDILINTLEPCVNEITFDGL-GSFVARK-GNK----GPKVAVVGHMDEVGFMVTH---IDESG 76 (356)
T ss_pred HHHHHcCCCCCCchHHHHHHHHHHHHHhCCEEEECCC-CCEEEEe-CCC----CcEEEEEecccccCEEEEE---ECCCC
Confidence 5789999999999999999995 777 8899997 7999986 522 2379999999999999996 79999
Q ss_pred eeEEeEEEeCCCcccccccceeccccEEEEecCCCCCCCceeeeeeeCCCeEEecCCCcccccccccCCCCCCCccceee
Q 013257 78 YLEVGVQTYGGGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRIDEPIMRIPTLAIHLDRNVNSDGFKVNTQSHLVP 157 (447)
Q Consensus 78 ~~~l~v~~yGG~~~~tw~dr~L~lagrV~i~~~~~G~~~~~~klv~~~~~~gvI~~laiHl~~~~~~~~~~~~~~~~l~i 157 (447)
|+ +|.++|||++++ | ++++|+|+++ +| ..+ .|||+.+|||+.++++++ +..+.++|||
T Consensus 77 ~l--~~~~lGG~~~~~-----l-~~q~V~i~t~-~g--~~v---------~GVig~~~~H~~~~~~~~--k~~~~~~l~I 134 (356)
T PRK09864 77 FL--RFTTIGGWWNQS-----M-LNHRVTIRTH-KG--VKI---------PGVIGSVAPHALTEKQKQ--QPLSFDEMFI 134 (356)
T ss_pred eE--EEEeCCCcCccc-----c-CCCEEEEEeC-CC--CEE---------EEEEeCCccccCChhHcc--cCCChhHEEE
Confidence 95 679999955554 4 7899999986 55 211 599999999999865532 3455599999
Q ss_pred eEeccchhhhccccCCCCCCccccccccchhHHHHHHHHHcCCCCCCeeeeeeeeeecCCceeeccCCceEeecccchhh
Q 013257 158 ILATSLKEELNKVVTDSPNERTDTYSSKHHSHLLQMIASQIGCRPDDICDFELQACDTQPSIVAGIKKEFIFSGRLDNLC 237 (447)
Q Consensus 158 diG~~s~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~gV~~gdiv~~d~~~~~~~~~~~~Gl~~~~i~~kalDnr~ 237 (447)
|+|+.|+| +++++||++||+++||..|.. ++++++.||+||||+
T Consensus 135 DiGa~s~e----------------------------e~~~~GV~vGD~v~~~~~~~~--------l~~~~i~~kalDnR~ 178 (356)
T PRK09864 135 DIGANSRE----------------------------EVEKRGVEIGDFISPEANFAC--------WGEDKVVGKALDNRI 178 (356)
T ss_pred EeCCCCHH----------------------------HHHhcCCCCCCEEEECCCcEE--------EcCCEEEEEeCccHH
Confidence 99999976 678999999999999999865 357899999999999
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcccccccCCcchhhHHHHHhhccCCChHHHHHhhhcceEEEEe
Q 013257 238 MSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQGAGSPAMLDALSRITNSFCSNSKLIEKAIQRSFLVSAD 317 (447)
Q Consensus 238 g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~gA~~~~~pd~l~ri~~~~~~~~~~~~~~~~~s~aIs~D 317 (447)
|||+++++++++++ ++.++|++||+|||||+|||++|++.+.| |++|++|
T Consensus 179 g~~~lle~l~~l~~-------~~~~vy~v~TvQEEvGlrGA~~aa~~i~P-----------------------DiaIavD 228 (356)
T PRK09864 179 GCAMMAELLQTVNN-------PEITLYGVGSVEEEVGLRGAQTSAEHIKP-----------------------DVVIVLD 228 (356)
T ss_pred HHHHHHHHHHHhhc-------CCCeEEEEEEcchhcchHHHHHHHhcCCC-----------------------CEEEEEe
Confidence 99999999988752 34678999999999999999999998655 5999999
Q ss_pred cCCCCCCCCCCCCCCCCCCccCCccEEEEcCCCccccCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCC-hHHHHhcCC
Q 013257 318 MAHALHPNYMDKHEDNHQPKLHGGLVIKHNANQRYATNAVTSFVFREVASKHNLPVQDFVVRNDMACGST-IGPILASGV 396 (447)
Q Consensus 318 v~ha~~P~~~~~~~~~~~~~LG~Gp~ik~~~~~~~~t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T-~g~i~~a~~ 396 (447)
++++.|+ |+........+||+||+|+..+.+ ++.|+.+.++++++|+++|||||+.+. ++||| ++.+|.++.
T Consensus 229 vt~~~d~--p~~~~~~~~~~lG~Gp~i~~~D~~-~i~~~~l~~~l~~~A~~~~Ip~Q~~~~----~~ggTDa~~i~~~~~ 301 (356)
T PRK09864 229 TAVAGDV--PGIDNIKYPLKLGQGPGLMLFDKR-YFPNQKLVAALKSCAAHNDLPLQFSTM----KTGATDGGRYNVMGG 301 (356)
T ss_pred cccCCCC--CCCcccccccccCCCCeEEEccCC-ccCCHHHHHHHHHHHHHcCCCceEEEc----CCCCchHHHHHHhCC
Confidence 9999873 222222235789999999988775 889999999999999999999999875 34566 689999999
Q ss_pred CCcEEEechhhhccchHHhhcCHHHHHHHHHHHHHHHHHhhh
Q 013257 397 GIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQEFSE 438 (447)
Q Consensus 397 Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f~~~~~~ 438 (447)
|+||+.||||+||||||.||++++|++++++|+.+|++++++
T Consensus 302 Gvpt~~isiP~RY~Hs~~e~~~~~D~e~~~~Ll~~~~~~l~~ 343 (356)
T PRK09864 302 GRPVVALCLPTRYLHANSGMISKADYDALLTLIRDFLTTLTA 343 (356)
T ss_pred CCcEEEEeeccCcCCCcceEeEHHHHHHHHHHHHHHHHhcch
Confidence 999999999999999999999999999999999999998865
No 8
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8e-70 Score=548.09 Aligned_cols=334 Identities=22% Similarity=0.219 Sum_probs=288.0
Q ss_pred hhchhhhcCCCcceeccccceE--Eee---eEEEEccCCeEEEEEeCCcccCCCCeEEEEeecCCCceEeecCccccCCC
Q 013257 3 RRGVCKQWGINRFQREKIGNWK--LAR---DTFFTRNHSTIIAFAVGKKYVAGNGFHVVGAHTDSPCLKLKPVSKVTKGG 77 (447)
Q Consensus 3 ~~~~~~~~~~sG~E~~~~~~w~--l~~---~~~~d~~~gnlia~~~g~~~~~~~~~vmi~AH~De~g~~Vk~~~~i~~~G 77 (447)
.++|++..|+||||.+++++|+ +++ ++.+|+. |||||.+.|++ +.+++||+|||||+||||++ |+++|
T Consensus 8 LkeL~~~~gpsG~E~eVr~~~~~el~~~~~ev~~D~l-Gnlia~~~g~~---g~~~imi~AHmDEiG~mV~~---I~~~G 80 (355)
T COG1363 8 LKELLEAPGPSGYEEEVRDVLKEELEPLGDEVEVDRL-GNLIAKKGGKN---GPPKVMIAAHMDEIGFMVKE---IEDDG 80 (355)
T ss_pred HHHHHcCCCCCCcHHHHHHHHHHHHHHhCCceEEcCC-CcEEEEecCCC---CCccEEEEeecceeeeeEEE---ECCCc
Confidence 5788999999999999999995 888 8999997 79999987722 12359999999999999996 79999
Q ss_pred eeEEeEEEeCCCcccccccceeccccEEEEecCCCCCCCceeeeeeeCCCeEEecCCCccccccc-ccCCCCCCCcccee
Q 013257 78 YLEVGVQTYGGGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRIDEPIMRIPTLAIHLDRNV-NSDGFKVNTQSHLV 156 (447)
Q Consensus 78 ~~~l~v~~yGG~~~~tw~dr~L~lagrV~i~~~~~G~~~~~~klv~~~~~~gvI~~laiHl~~~~-~~~~~~~~~~~~l~ 156 (447)
+ |+|.++|||+++++ .+++|+|.+. +| +.+ .|+|++.|||++++. +++ +..+..+||
T Consensus 81 ~--Lr~~~IGG~~~~~~------~gq~v~i~t~-~g--~~i---------~GvIg~~p~H~~~~~~~~~--~~~~~~el~ 138 (355)
T COG1363 81 F--LRFVPIGGWDPQVL------EGQRVTIHTD-KG--KKI---------RGVIGSKPPHLLKEEAERK--KPPEWDELF 138 (355)
T ss_pred e--EEEEEcCCcChhhc------cCcEEEEEeC-CC--cEE---------eeeEcccCccccCcccccc--CCCchhhEE
Confidence 9 56799999666653 6889999987 66 222 699999999999754 322 335669999
Q ss_pred eeEeccchhhhccccCCCCCCccccccccchhHHHHHHHHHcCCCCCCeeeeeeeeeecCCceeeccCCceEeecccchh
Q 013257 157 PILATSLKEELNKVVTDSPNERTDTYSSKHHSHLLQMIASQIGCRPDDICDFELQACDTQPSIVAGIKKEFIFSGRLDNL 236 (447)
Q Consensus 157 idiG~~s~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~gV~~gdiv~~d~~~~~~~~~~~~Gl~~~~i~~kalDnr 236 (447)
+|+|+.|+| +|+++||++||+++|+..|.. +++++|.||+||||
T Consensus 139 iDiga~ske----------------------------ea~~lGI~vGd~v~~~~~~~~--------l~~~~i~skalDdR 182 (355)
T COG1363 139 IDIGASSKE----------------------------EAEELGIRVGDFVVFDPRFRE--------LANGRVVSKALDDR 182 (355)
T ss_pred EECCcCCHH----------------------------HHHhcCCCCCCEEEEcCceEE--------ecCCcEEeeeccch
Confidence 999999986 689999999999999999987 45689999999999
Q ss_pred hhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcccccccCCcchhhHHHHHhhccCCChHHHHHhhhcceEEEE
Q 013257 237 CMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQGAGSPAMLDALSRITNSFCSNSKLIEKAIQRSFLVSA 316 (447)
Q Consensus 237 ~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~gA~~~~~pd~l~ri~~~~~~~~~~~~~~~~~s~aIs~ 316 (447)
+||++++++++++... +.+.++|+++|+|||||+|||+++++.+.| +++|++
T Consensus 183 ~gva~lle~lk~l~~~-----~~~~~vy~v~tvqEEVGlrGA~~~a~~i~p-----------------------d~aiav 234 (355)
T COG1363 183 AGVAALLELLKELKGI-----ELPADVYFVASVQEEVGLRGAKTSAFRIKP-----------------------DIAIAV 234 (355)
T ss_pred HhHHHHHHHHHHhccC-----CCCceEEEEEecchhhccchhhccccccCC-----------------------CEEEEE
Confidence 9999999999998421 246789999999999999999999998655 599999
Q ss_pred ecCCCCC-CCCCCCCCCCCCCccCCccEEEEcCCCccccCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCC-hHHHHhc
Q 013257 317 DMAHALH-PNYMDKHEDNHQPKLHGGLVIKHNANQRYATNAVTSFVFREVASKHNLPVQDFVVRNDMACGST-IGPILAS 394 (447)
Q Consensus 317 Dv~ha~~-P~~~~~~~~~~~~~LG~Gp~ik~~~~~~~~t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T-~g~i~~a 394 (447)
|++++.| |..+ ....+||+||+|...+.+ +..|+.++++|.++|+++|||||.++. ++||| ++++|.+
T Consensus 235 d~~~~~d~~~~~-----~~~~~lg~Gp~i~~~D~~-~~~~~~l~~~L~~~A~~~~Ip~Q~~v~----~~ggTDA~a~~~~ 304 (355)
T COG1363 235 DVTPAGDTPGVP-----KGDVKLGKGPVIRVKDAS-GIYHPKLRKFLLELAEKNNIPYQVDVS----PGGGTDAGAAHLT 304 (355)
T ss_pred ecccccCCCCCc-----ccccccCCCCEEEEEcCC-CCCCHHHHHHHHHHHHHcCCCeEEEec----CCCCccHHHHHHc
Confidence 9999997 4433 346799999999998875 667999999999999999999999996 44566 7899999
Q ss_pred CCCCcEEEechhhhccchHHhhcCHHHHHHHHHHHHHHHHHhhhh
Q 013257 395 GVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQEFSEL 439 (447)
Q Consensus 395 ~~Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f~~~~~~~ 439 (447)
+.||||+.||+|+||||||.|+++++|++++++||.+|++++...
T Consensus 305 g~gvpta~Igip~ry~Hs~~e~~~~~D~~~~~~Ll~~~i~~~~~~ 349 (355)
T COG1363 305 GGGVPTALIGIPTRYIHSPVEVAHLDDLEATVKLLVAYLESLDRE 349 (355)
T ss_pred CCCCceEEEecccccccCcceeecHHHHHHHHHHHHHHHHhcchh
Confidence 999999999999999999999999999999999999999987653
No 9
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=100.00 E-value=5.6e-68 Score=538.90 Aligned_cols=334 Identities=16% Similarity=0.137 Sum_probs=280.3
Q ss_pred hhchhhhcCCCcceeccccceE--Eee---eEEEEccCCeEEEEEeCCcccCCCCeEEEEeecCCCceEeecCccccCCC
Q 013257 3 RRGVCKQWGINRFQREKIGNWK--LAR---DTFFTRNHSTIIAFAVGKKYVAGNGFHVVGAHTDSPCLKLKPVSKVTKGG 77 (447)
Q Consensus 3 ~~~~~~~~~~sG~E~~~~~~w~--l~~---~~~~d~~~gnlia~~~g~~~~~~~~~vmi~AH~De~g~~Vk~~~~i~~~G 77 (447)
.++|++..|+||||.++++.|. +++ ++++|++ ||+||.+.|... +++++|++|||||+||||++ |+++|
T Consensus 4 L~~L~~~~gpSG~E~~v~~~i~~~l~~~~~~v~~D~~-GNvia~~~g~~~--~~~~vml~AHmDeVGf~V~~---I~~~G 77 (350)
T TIGR03107 4 IKEVTELQGTSGFEHPIRDYLRQDITPLVDQVETDGL-GGIFGIKESQVE--NAPRVMVAAHMDEVGFMVSQ---IKPDG 77 (350)
T ss_pred HHHHHhCCCCCCCcHHHHHHHHHHHHhhCCEEEECCC-CCEEEEecCCCC--CCCEEEEEecccEeCEEEEE---ECCCc
Confidence 5789999999999999999995 777 8899997 799998755311 13479999999999999996 79999
Q ss_pred eeEEeEEEeCCCcccccccceeccccEEEEecCCCCCCCceeeeeeeCCCeEEecCCCcccccccccCCCCCCCccceee
Q 013257 78 YLEVGVQTYGGGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRIDEPIMRIPTLAIHLDRNVNSDGFKVNTQSHLVP 157 (447)
Q Consensus 78 ~~~l~v~~yGG~~~~tw~dr~L~lagrV~i~~~~~G~~~~~~klv~~~~~~gvI~~laiHl~~~~~~~~~~~~~~~~l~i 157 (447)
|+ +|.++|||+++ .| ++++|+|+++ +| +.+ .|||+++|||++++++. ..+..+.++|||
T Consensus 78 ~l--~~~~vGG~~~~-----~l-~gq~V~i~t~-~g--~~i---------~GViG~~~~Hl~~~~~~-~~~~~~~~~l~I 136 (350)
T TIGR03107 78 TF--RVVELGGWNPL-----VV-SSQRFTLFTR-KG--KKY---------PVISGSVPPHLLRGSSG-GPQLPAVSDILF 136 (350)
T ss_pred eE--EEEeCCCcccc-----cc-CCcEEEEEeC-CC--CEE---------EEEEeCCcccccChhhc-ccccCChhhEEE
Confidence 95 67999995555 44 7899999886 55 312 69999999999876431 124445599999
Q ss_pred eEeccchhhhccccCCCCCCccccccccchhHHHHHHHHHcCCCCCCeeeeeeeeeecCCceeeccCCceEeecccchhh
Q 013257 158 ILATSLKEELNKVVTDSPNERTDTYSSKHHSHLLQMIASQIGCRPDDICDFELQACDTQPSIVAGIKKEFIFSGRLDNLC 237 (447)
Q Consensus 158 diG~~s~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~gV~~gdiv~~d~~~~~~~~~~~~Gl~~~~i~~kalDnr~ 237 (447)
|+|+.|+| +++++||++||+++|+..|.... +++++.||+||||+
T Consensus 137 DiGa~ske----------------------------e~~~~GI~vGd~v~~~~~~~~~~-------~~~~i~~kalDdR~ 181 (350)
T TIGR03107 137 DGGFTNKD----------------------------EAWSFGVRPGDVIVPQTETILTA-------NGKNVISKAWDNRY 181 (350)
T ss_pred EeCCCCHH----------------------------HHHhcCCCCCCEEEECCCeEEEc-------CCCEEEEeccccHH
Confidence 99999986 67899999999999999987631 46789999999999
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcccccccCCcchhhHHHHHhhccCCChHHHHHhhhcceEEEEe
Q 013257 238 MSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQGAGSPAMLDALSRITNSFCSNSKLIEKAIQRSFLVSAD 317 (447)
Q Consensus 238 g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~gA~~~~~pd~l~ri~~~~~~~~~~~~~~~~~s~aIs~D 317 (447)
||++++++++++++. +.+..+|++||+|||||+|||++|++.+. ||++|++|
T Consensus 182 g~a~l~e~l~~l~~~-----~~~~~l~~~~tvqEEvG~rGA~~aa~~i~-----------------------pD~aI~vD 233 (350)
T TIGR03107 182 GVLMILELLESLKDQ-----ELPNTLIAGANVQEEVGLRGAHVSTTKFN-----------------------PDIFFAVD 233 (350)
T ss_pred HHHHHHHHHHHhhhc-----CCCceEEEEEEChhhcCchhhhhHHhhCC-----------------------CCEEEEEe
Confidence 999999999988642 13567899999999999999999988864 45999999
Q ss_pred cCCCCCCCCCCCCCCCCCCccCCccEEEEcCCCccccCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCC-hHHHHhcCC
Q 013257 318 MAHALHPNYMDKHEDNHQPKLHGGLVIKHNANQRYATNAVTSFVFREVASKHNLPVQDFVVRNDMACGST-IGPILASGV 396 (447)
Q Consensus 318 v~ha~~P~~~~~~~~~~~~~LG~Gp~ik~~~~~~~~t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T-~g~i~~a~~ 396 (447)
++++.|. ++.. . ..||+||+|+..+.+ ++.|+.+.++++++|+++|||||+.. .+||| ++.++.++.
T Consensus 234 v~~~~d~--~~~~---~-~~lg~Gp~i~~~D~~-~i~~~~l~~~l~~~A~~~~I~~Q~~~-----~~gGtDa~~~~~~~~ 301 (350)
T TIGR03107 234 CSPAGDI--YGDQ---G-GKLGEGTLLRFFDPG-HIMLPRMKDFLLTTAEEAGIKYQYYV-----AKGGTDAGAAHLKNS 301 (350)
T ss_pred cCCcCCC--CCCC---c-cccCCCceEEEecCC-CCCCHHHHHHHHHHHHHcCCCcEEec-----CCCCchHHHHHHhCC
Confidence 9999873 2211 1 689999999988775 88899999999999999999999843 24566 678999999
Q ss_pred CCcEEEechhhhccchHHhhcCHHHHHHHHHHHHHHHHHhhh
Q 013257 397 GIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQEFSE 438 (447)
Q Consensus 397 Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f~~~~~~ 438 (447)
|+||+.||+|+|||||+.|+++++|++++++|+.+|++++++
T Consensus 302 Gvpt~~i~ip~Ry~Hs~~e~i~~~D~~~~~~Ll~~~i~~l~~ 343 (350)
T TIGR03107 302 GVPSTTIGVCARYIHSHQTLYSIDDFLAAQAFLQAIVKKLDR 343 (350)
T ss_pred CCcEEEEccCcccccChhheeeHHHHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999999999999999999988764
No 10
>PRK09961 exoaminopeptidase; Provisional
Probab=100.00 E-value=1e-63 Score=508.02 Aligned_cols=325 Identities=14% Similarity=0.135 Sum_probs=270.4
Q ss_pred hhchhhhcCCCcceeccccceE--Eee---eEEEEccCCeEEEEEeCCcccCCCCeEEEEeecCCCceEeecCccccCCC
Q 013257 3 RRGVCKQWGINRFQREKIGNWK--LAR---DTFFTRNHSTIIAFAVGKKYVAGNGFHVVGAHTDSPCLKLKPVSKVTKGG 77 (447)
Q Consensus 3 ~~~~~~~~~~sG~E~~~~~~w~--l~~---~~~~d~~~gnlia~~~g~~~~~~~~~vmi~AH~De~g~~Vk~~~~i~~~G 77 (447)
.++|++..++||+|.++++.|+ +++ ++.+|+. ||++|...|+. .+++|++|||||+||||++ |+++|
T Consensus 6 L~~L~~~~s~sG~E~~v~~~i~~~l~~~~~~v~~D~~-Gnvi~~~~g~~----~~~v~l~aHmDevg~~V~~---I~~~G 77 (344)
T PRK09961 6 LKALSEADAIASSEQEVRQILLEEADRLQKEVRFDGL-GSVLIRLNEST----GPKVMICAHMDEVGFMVRS---ISREG 77 (344)
T ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHhhCCEEEECCC-CCEEEEEcCCC----CCEEEEEeccceeceEEEE---ECCCc
Confidence 4788999999999999999995 777 7888887 79999764532 2479999999999999996 79999
Q ss_pred eeEEeEEEeCCCcccccccceeccccEEEEecCCCCCCCceeeeeeeCCCeEEecCCCcccccccccCCCCCCCccceee
Q 013257 78 YLEVGVQTYGGGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRIDEPIMRIPTLAIHLDRNVNSDGFKVNTQSHLVP 157 (447)
Q Consensus 78 ~~~l~v~~yGG~~~~tw~dr~L~lagrV~i~~~~~G~~~~~~klv~~~~~~gvI~~laiHl~~~~~~~~~~~~~~~~l~i 157 (447)
|+ +|.++|||++++ | ++++|+|+++ +| +.+ .|+|. +.+. + .+.++||+
T Consensus 78 ~l--~~~~vGG~~~~~-----~-~~~~v~i~~~-~g--~~i---------~Gvi~--------~~~~---~-~~~~~l~i 125 (344)
T PRK09961 78 AI--DVLPVGNVRMAA-----R-QLQPVRITTR-EE--CKI---------PGLLN--------GDRQ---G-NDVSAMRV 125 (344)
T ss_pred eE--EEEeCCCccccc-----c-CCCEEEEEeC-CC--CEe---------eEEEC--------hhhc---C-CCHHHEEE
Confidence 95 679999955554 4 7899999986 55 211 68981 1111 2 34589999
Q ss_pred eEeccchhhhccccCCCCCCccccccccchhHHHHHHHHHcCCCCCCeeeeeeeeeecCCceeeccCCceEeecccchhh
Q 013257 158 ILATSLKEELNKVVTDSPNERTDTYSSKHHSHLLQMIASQIGCRPDDICDFELQACDTQPSIVAGIKKEFIFSGRLDNLC 237 (447)
Q Consensus 158 diG~~s~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~gV~~gdiv~~d~~~~~~~~~~~~Gl~~~~i~~kalDnr~ 237 (447)
|+|+.|+| +++++||++||+++||..|+.. +++++.||+||||+
T Consensus 126 DiG~~s~e----------------------------e~~~~GI~~Gd~v~~~~~~~~~--------~~~~i~gkalDnR~ 169 (344)
T PRK09961 126 DIGARSYD----------------------------EVMQAGIRPGDRVTFDTTFQVL--------PHQRVMGKAFDDRL 169 (344)
T ss_pred EcCCCCHH----------------------------HHHhcCCCCCCEEEEcceeEEe--------cCCEEEEeechhhH
Confidence 99999876 6789999999999999999873 56789999999999
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcccccccCCcchhhHHHHHhhccCCChHHHHHhhhcceEEEEe
Q 013257 238 MSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQGAGSPAMLDALSRITNSFCSNSKLIEKAIQRSFLVSAD 317 (447)
Q Consensus 238 g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~gA~~~~~pd~l~ri~~~~~~~~~~~~~~~~~s~aIs~D 317 (447)
|||+++++|+++++. +....+|++||+|||||+|||++|++.+ +||++|++|
T Consensus 170 g~~~lle~l~~l~~~-----~~~~~v~~~~tvqEEvG~rGa~~aa~~i-----------------------~pd~~I~vD 221 (344)
T PRK09961 170 GCYLLVTLLRELHDA-----ELPAEVWLVASSSEEVGLRGGQTATRAV-----------------------SPDVAIVLD 221 (344)
T ss_pred hHHHHHHHHHHhhhc-----CCCceEEEEEEcccccchHHHHHHHhcc-----------------------CCCEEEEEe
Confidence 999999999988632 1345688999999999999999999986 456999999
Q ss_pred cCCCCCCCCCCCCCCCCCCccCCccEEEEcCCCccccCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCC
Q 013257 318 MAHALHPNYMDKHEDNHQPKLHGGLVIKHNANQRYATNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVG 397 (447)
Q Consensus 318 v~ha~~P~~~~~~~~~~~~~LG~Gp~ik~~~~~~~~t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~G 397 (447)
++++.+ +++. +..+.++||+||+|+..+. ++++|+.+.++++++|++++||||..+.. .+|+++++++.++.|
T Consensus 222 v~~~~d--~~~~-~~~~~~~lg~Gp~i~~~D~-~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~---ggGTDa~~~~~~~~G 294 (344)
T PRK09961 222 TACWAK--NFDY-GAANHRQIGNGPMLVLSDK-SLIAPPKLTAWIETVAAEIGIPLQADMFS---NGGTDGGAVHLTGTG 294 (344)
T ss_pred ccCCCC--CCCC-CCCcccccCCCceEEEccC-CcCCCHHHHHHHHHHHHHcCCCcEEEecC---CCcchHHHHHHhCCC
Confidence 998654 4442 2333579999999998865 59999999999999999999999986542 234457899999999
Q ss_pred CcEEEechhhhccchHHhhcCHHHHHHHHHHHHHHHHHhhh
Q 013257 398 IRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQEFSE 438 (447)
Q Consensus 398 i~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f~~~~~~ 438 (447)
+||+.+|+|+|||||+.|+++++|++++++|+.+|++.+++
T Consensus 295 iptv~ig~p~ry~Hs~~E~v~~~D~~~~~~Ll~~~i~~l~~ 335 (344)
T PRK09961 295 VPTVVMGPATRHGHCAASIADCRDILQMIQLLSALIQRLTR 335 (344)
T ss_pred CCEEEechhhhcccChhheEEHHHHHHHHHHHHHHHHHcCH
Confidence 99999999999999999999999999999999999988754
No 11
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=100.00 E-value=4.2e-62 Score=485.50 Aligned_cols=290 Identities=25% Similarity=0.266 Sum_probs=230.3
Q ss_pred CeEEEEEeCCcccCCCCeEEEEeecCCCceEeecCccccCCCeeEEeEEEeCCCcccccccceeccccEEEEecCCCCCC
Q 013257 36 STIIAFAVGKKYVAGNGFHVVGAHTDSPCLKLKPVSKVTKGGYLEVGVQTYGGGLWHTWFDRDLTVAGRVIIREGKDGSG 115 (447)
Q Consensus 36 gnlia~~~g~~~~~~~~~vmi~AH~De~g~~Vk~~~~i~~~G~~~l~v~~yGG~~~~tw~dr~L~lagrV~i~~~~~G~~ 115 (447)
|||||.+.|+. +++++||+|||||+||+|+. |+++||| +|.++||++++.+ ++++|+|.++ +|
T Consensus 1 Gnvi~~~~g~~---~~~~vmi~AHmDEiG~iV~~---I~~~G~l--~~~~lGg~~~~~l------~gq~v~i~~~-~g-- 63 (292)
T PF05343_consen 1 GNVIARKKGKE---GGPKVMIAAHMDEIGFIVRH---IDDDGFL--RFVPLGGIDPRVL------PGQRVRIHTR-DG-- 63 (292)
T ss_dssp S-EEEEECSSC---SSSEEEEEEE--B-EEEEEE---EETTSEE--EEEEESS--GGGT------TTEEEEEEET-TE--
T ss_pred CcEEEEECCCC---CCceEEEEEccceeeEEEEE---ECCCCEE--EEEEcCCcCcccc------CCCEEEEEcC-Cc--
Confidence 69999987722 24589999999999999995 7999995 6799999666653 6888999987 55
Q ss_pred CceeeeeeeCCCeEEecCCCcccccccccCCCCCCCccceeeeEeccchhhhccccCCCCCCccccccccchhHHHHHHH
Q 013257 116 PYSHKLVRIDEPIMRIPTLAIHLDRNVNSDGFKVNTQSHLVPILATSLKEELNKVVTDSPNERTDTYSSKHHSHLLQMIA 195 (447)
Q Consensus 116 ~~~~klv~~~~~~gvI~~laiHl~~~~~~~~~~~~~~~~l~idiG~~s~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a 195 (447)
.+ .|+|+.+|+|+.++.+++ +..+.++||+|+|++|+| ++
T Consensus 64 ~i----------~Gvig~~~~H~~~~~~~~--~~~~~~~l~iDiGa~s~e----------------------------e~ 103 (292)
T PF05343_consen 64 DI----------PGVIGSKPPHLQSEEERK--KVPKWDDLFIDIGASSKE----------------------------EV 103 (292)
T ss_dssp EE----------EEEEEE--GGGCCHHHHH--STTEGGGEEEECSGSSHH----------------------------HH
T ss_pred EE----------EEEEcCCCCcccChhhcc--cCCCcceEEEEeccCCHH----------------------------HH
Confidence 33 699999999999864431 234459999999999876 67
Q ss_pred HHcCCCCCCeeeeeeeeeecCCceeeccCCceEeecccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCc
Q 013257 196 SQIGCRPDDICDFELQACDTQPSIVAGIKKEFIFSGRLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGS 275 (447)
Q Consensus 196 ~~~gV~~gdiv~~d~~~~~~~~~~~~Gl~~~~i~~kalDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGs 275 (447)
+++||++||+++|+..|.. +++.+|.||+||||+||++++++++++++. +.+..++++||+|||||+
T Consensus 104 ~~~GV~iGd~v~~~~~~~~--------~~~~~i~gkalDdR~g~~~lle~l~~l~~~-----~~~~~v~~v~tvqEEvG~ 170 (292)
T PF05343_consen 104 EELGVRIGDPVVFDPPFRE--------LGNGRIVGKALDDRAGCAVLLELLRELKEK-----ELDVDVYFVFTVQEEVGL 170 (292)
T ss_dssp HHTTS-TT-EEEES---EE--------ETTTEEEETTHHHHHHHHHHHHHHHHHTTS-----S-SSEEEEEEESSCTTTS
T ss_pred HhCCCCCCCEEeecCCeEE--------eCCCEEEEEeCCchhHHHHHHHHHHHHhhc-----CCCceEEEEEEeeeeecC
Confidence 8999999999999999987 457789999999999999999999998752 134678999999999999
Q ss_pred ccccccCCcchhhHHHHHhhccCCChHHHHHhhhcceEEEEecCCCCC-CCCCCCCCCCCCCccCCccEEEEcCCCcccc
Q 013257 276 DSAQGAGSPAMLDALSRITNSFCSNSKLIEKAIQRSFLVSADMAHALH-PNYMDKHEDNHQPKLHGGLVIKHNANQRYAT 354 (447)
Q Consensus 276 rga~gA~~~~~pd~l~ri~~~~~~~~~~~~~~~~~s~aIs~Dv~ha~~-P~~~~~~~~~~~~~LG~Gp~ik~~~~~~~~t 354 (447)
|||+.|++. ++||++|++|++++.| |..++ . ...||+||+|++.+.. ++.
T Consensus 171 rGA~~aa~~-----------------------i~PD~ai~vD~~~a~d~~~~~~---~--~~~lG~Gp~i~~~D~~-~i~ 221 (292)
T PF05343_consen 171 RGAKTAAFR-----------------------IKPDIAIAVDVTPAGDTPGSDE---K--EQGLGKGPVIRVGDSS-MIP 221 (292)
T ss_dssp HHHHHHHHH-----------------------H-CSEEEEEEEEEESSSTTSTT---T--TSCTTS-EEEEEEETT-EES
T ss_pred cceeecccc-----------------------cCCCEEEEEeeeccCCCCCCch---h--hccCCCCcEEEEccCC-CCC
Confidence 999998776 4667999999999987 43322 1 1229999999998875 889
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCC-hHHHHhcCCCCcEEEechhhhccchHHhhcCHHHHHHHHHH
Q 013257 355 NAVTSFVFREVASKHNLPVQDFVVRNDMACGST-IGPILASGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEH 428 (447)
Q Consensus 355 ~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T-~g~i~~a~~Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~l 428 (447)
|+.+.++|+++|++++||||+.+. .+|+| .+++|.++.|+||+.||||+|||||+.|+++++|++++++|
T Consensus 222 ~~~l~~~l~~~A~~~~Ip~Q~~~~----~~ggTDa~~~~~~~~Gi~t~~i~iP~ry~Hs~~e~~~~~Di~~~~~L 292 (292)
T PF05343_consen 222 NPKLVDKLREIAEENGIPYQREVF----SGGGTDAGAIQLSGGGIPTAVISIPCRYMHSPVEVIDLDDIEATIDL 292 (292)
T ss_dssp HHHHHHHHHHHHHHTT--EEEEEE----SSSSSTHHHHHTSTTSSEEEEEEEEEBSTTSTTEEEEHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCeEEEec----CCcccHHHHHHHcCCCCCEEEEecccccCCCcceEEEHHHHHHHhhC
Confidence 999999999999999999999765 35666 68999999999999999999999999999999999999987
No 12
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=100.00 E-value=3.3e-60 Score=481.63 Aligned_cols=321 Identities=18% Similarity=0.116 Sum_probs=267.7
Q ss_pred hhchhhhcCCCcceeccccceE--Eee---eEEEEccCCeEEEEEeCCcccCCCCeEEEEeecCCCceEeecCccccCCC
Q 013257 3 RRGVCKQWGINRFQREKIGNWK--LAR---DTFFTRNHSTIIAFAVGKKYVAGNGFHVVGAHTDSPCLKLKPVSKVTKGG 77 (447)
Q Consensus 3 ~~~~~~~~~~sG~E~~~~~~w~--l~~---~~~~d~~~gnlia~~~g~~~~~~~~~vmi~AH~De~g~~Vk~~~~i~~~G 77 (447)
.++|++..++||+|.++++.|. +++ ++.+|+. ||++|.+.|+. +.+++|++||||++||||++ |+++|
T Consensus 9 Lk~Lv~~~s~SG~E~~V~~~l~~~l~~~g~ev~~D~~-Gnlia~~~g~~---~~~~v~l~aHmDevG~~V~~---I~~~G 81 (343)
T TIGR03106 9 LLALLAIPSPTGFTDAVVRYVAERLEDLGIEYELTRR-GAIRATLPGRE---ATPARAVVTHLDTLGAMVRE---LKDNG 81 (343)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHcCCeEEECCC-eEEEEEECCCC---CCCeEEEEEeeccccceeeE---ECCCC
Confidence 4678889999999999999995 766 7888886 79999876632 12479999999999999995 79999
Q ss_pred eeEEeEEEeCCCcccccccceeccccEEEEecCCCCCCCceeeeeeeCCCeEEe-c-CCCcccccccccCCCCCCCcc--
Q 013257 78 YLEVGVQTYGGGLWHTWFDRDLTVAGRVIIREGKDGSGPYSHKLVRIDEPIMRI-P-TLAIHLDRNVNSDGFKVNTQS-- 153 (447)
Q Consensus 78 ~~~l~v~~yGG~~~~tw~dr~L~lagrV~i~~~~~G~~~~~~klv~~~~~~gvI-~-~laiHl~~~~~~~~~~~~~~~-- 153 (447)
|+ +|.++|||++++ | ++++|+|+++ +| ++ .|+| + ..|+|+.++++++ +..+.+
T Consensus 82 ~l--~~~~iGG~~~~~-----l-~g~~v~i~t~-~g--~~----------~Gvi~~~~~~~H~~~~~~~~--~~~~~~~~ 138 (343)
T TIGR03106 82 RL--ELVPIGHWSARF-----A-EGARVTIFTD-SG--EF----------RGTILPLKASGHAFNEEIDS--QPTGWDHV 138 (343)
T ss_pred eE--EEEecCCCcccc-----e-eCCEEEEEeC-CC--eE----------EEEECCCCCCCccCChHHcc--CCCCCccc
Confidence 95 679999966654 3 6889999986 44 33 6999 7 9999998765432 344558
Q ss_pred ceeeeEeccchhhhccccCCCCCCccccccccchhHHHHHHHHHcCCCCCCeeeeeeeeeecCCceeeccCCceEeeccc
Q 013257 154 HLVPILATSLKEELNKVVTDSPNERTDTYSSKHHSHLLQMIASQIGCRPDDICDFELQACDTQPSIVAGIKKEFIFSGRL 233 (447)
Q Consensus 154 ~l~idiG~~s~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~gV~~gdiv~~d~~~~~~~~~~~~Gl~~~~i~~kal 233 (447)
+|++|+|+.|+| +++++||++||+++|+..|.. ++++++.||++
T Consensus 139 ~l~iDiG~~s~e----------------------------e~~~lGV~~Gd~v~~~~~~~~--------~~~~~i~gr~~ 182 (343)
T TIGR03106 139 EVRVDARASCRA----------------------------DLVRLGISVGDFVAFDPQPEF--------LANGFIVSRHL 182 (343)
T ss_pred EEEEECCcCCHH----------------------------HHHHcCCCCCCEEEECCccEE--------ecCCEEEEEec
Confidence 999999999986 678999999999999999876 35789999999
Q ss_pred chhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcccccccCCcchhhHHHHHhhccCCChHHHHHhhhcceE
Q 013257 234 DNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQGAGSPAMLDALSRITNSFCSNSKLIEKAIQRSFL 313 (447)
Q Consensus 234 Dnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~gA~~~~~pd~l~ri~~~~~~~~~~~~~~~~~s~a 313 (447)
|||+||++++++++++.+.+ ......++++||+|||+| +| ++..+.|+ ++
T Consensus 183 D~K~G~a~~l~~~~~l~~~~---~~~~~~v~~~~t~qEEvG-~g---aa~~i~pd-----------------------~a 232 (343)
T TIGR03106 183 DDKAGVAALLAALKAIVEHK---VPLPVDVHPLFTITEEVG-SG---ASHALPPD-----------------------VA 232 (343)
T ss_pred ccHHhHHHHHHHHHHHHhcC---CCCCceEEEEEECCcccC-cc---chhcccHh-----------------------hh
Confidence 99999999999998875311 012456899999999999 65 55666665 56
Q ss_pred --EEEecCCCCCCCCCCCCCCCCCCccCCccEEEEcCCCccccCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCC-hHH
Q 013257 314 --VSADMAHALHPNYMDKHEDNHQPKLHGGLVIKHNANQRYATNAVTSFVFREVASKHNLPVQDFVVRNDMACGST-IGP 390 (447)
Q Consensus 314 --Is~Dv~ha~~P~~~~~~~~~~~~~LG~Gp~ik~~~~~~~~t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T-~g~ 390 (447)
|++|++++ .| + ...||+||+|+..+.+ ++.|+.+.++++++|++++||||+.+. ++||| +++
T Consensus 233 ~~i~vd~~~~-~p---~------~~~lg~Gp~i~~~d~~-~~~~~~l~~~l~~~A~~~~Ip~Q~~~~----~~~gtDa~~ 297 (343)
T TIGR03106 233 ELVSVDNGTV-AP---G------QNSSEHGVTIAMADSS-GPFDYHLTRKLIRLCQDHGIPHRRDVF----RYYRSDAAS 297 (343)
T ss_pred ccEEEEeccc-CC---C------CCcCCCCceEEEecCC-CCCCHHHHHHHHHHHHHcCCCcEEEec----CCCCChHHH
Confidence 99999997 33 2 2679999999988774 888999999999999999999999885 34566 689
Q ss_pred HHhcCCCCcEEEechhhhccchHHhhcCHHHHHHHHHHHHHHHHH
Q 013257 391 ILASGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQE 435 (447)
Q Consensus 391 i~~a~~Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f~~~ 435 (447)
+|.++.||||+.||+|+||||| .|+++++|++++++|+.+|+.+
T Consensus 298 ~~~~~~Gi~t~~i~iP~Ry~Hs-~e~~~~~D~~~~~~Ll~~~~~~ 341 (343)
T TIGR03106 298 AVEAGHDIRTALVTFGLDASHG-YERTHIDALEALANLLVAYAQS 341 (343)
T ss_pred HHHcCCCCCEEEeeccccchhh-hhhccHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999 9999999999999999999843
No 13
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=98.64 E-value=1.2e-07 Score=87.11 Aligned_cols=160 Identities=16% Similarity=0.160 Sum_probs=109.4
Q ss_pred CCceEeeccc-chhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcc-cccccCCcchhhHHHHHhhccCCCh
Q 013257 224 KKEFIFSGRL-DNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSD-SAQGAGSPAMLDALSRITNSFCSNS 301 (447)
Q Consensus 224 ~~~~i~~kal-Dnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsr-ga~gA~~~~~pd~l~ri~~~~~~~~ 301 (447)
.++++.|++- |+..++++++.+++.+.+.. ......+.++++..||+|+. |++-.... -
T Consensus 25 ~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~~~~~~i~~~~~~~EE~g~~~g~~~l~~~--------~-------- 85 (189)
T PF01546_consen 25 EDGRLYGRGADDMKGGIAAMLAALKALKESG---DDLPGNIIFLFTPDEEIGSIGGAKHLLEE--------G-------- 85 (189)
T ss_dssp ETTEEESTTTTTTHHHHHHHHHHHHHHHHTT---TTCSSEEEEEEESTCCGTSTTHHHHHHHH--------C--------
T ss_pred ECCEEEcCCcCCCcccHHHHHHHHHHHHhcc---ccccccccccccccccCCCcchhhhhhhh--------c--------
Confidence 4678888777 77888999888888764210 12356788999999999998 55422110 0
Q ss_pred HHHHHhhhcceEEEEecCCCCCCCCCCCCCCCCCCccCCccEEEEcCCCccccCHHHHHHHHHHHHhCCC-CEEEEEeec
Q 013257 302 KLIEKAIQRSFLVSADMAHALHPNYMDKHEDNHQPKLHGGLVIKHNANQRYATNAVTSFVFREVASKHNL-PVQDFVVRN 380 (447)
Q Consensus 302 ~~~~~~~~~s~aIs~Dv~ha~~P~~~~~~~~~~~~~LG~Gp~ik~~~~~~~~t~~~~~~~l~~~a~~~~I-p~Q~~~~r~ 380 (447)
....+++++++..|.+.... .+ ...++.+.+.+.+++++.+. +......
T Consensus 86 --~~~~~~~~~~~~~e~~~~~~--------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 135 (189)
T PF01546_consen 86 --AFFGLHPDYVIIGEPTGKGG--------------VG------------SDNDPPLVQALQAAAQEVGGEPPEPVAS-- 135 (189)
T ss_dssp --EEEEEEESEEEECECETTSE--------------EE------------HCTCHHHHHHHHHHHHHTTSSEEEEEEE--
T ss_pred --cccccccccccccccccccc--------------cc------------ccccHHHHHHHHHHHHHHhhccccccce--
Confidence 00012334444433322110 00 22478899999999999987 5565543
Q ss_pred CCCCCCChHHHHhc--CCCCcEEEechhhhccchHHhhcCHHHHHHHHHHHHHHHHH
Q 013257 381 DMACGSTIGPILAS--GVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQE 435 (447)
Q Consensus 381 d~~~G~T~g~i~~a--~~Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f~~~ 435 (447)
+|+|+.++... +.|+|++.+|.-.-.+|++.|-+...|+...++++.++++|
T Consensus 136 ---~g~tD~~~~~~~~~~~~~~i~~G~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~n 189 (189)
T PF01546_consen 136 ---GGGTDAGFLAEVKGLGIPAIGFGPGGSNAHTPDEYIDIEDLVKGAKIYAALLEN 189 (189)
T ss_dssp ---SSSSTHHHHHCHHHTTEEEEEEESCEESTTSTT-EEEHHHHHHHHHHHHHHHHT
T ss_pred ---eccccchhhhhhhccccceeeeCCCCCCCCCCCcEecHHHHHHHHHHHHHHHhC
Confidence 46666555544 67999999998889999999999999999999999999875
No 14
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=98.34 E-value=9.8e-06 Score=82.74 Aligned_cols=73 Identities=19% Similarity=0.281 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhhhccchHHhhcCHHHHHHHHHHHHHHH
Q 013257 355 NAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFF 433 (447)
Q Consensus 355 ~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f~ 433 (447)
|..+.+.+++.+++.+++.+... .+|+|++.+. +..|||++.+|.+..++||+.|.++++|+...++++..++
T Consensus 288 ~~~lv~~l~~a~~~~g~~~~~~~-----~~g~tD~~~~-~~~giP~v~~G~g~~~~Hs~~E~v~i~~~~~~~~~~~~~~ 360 (361)
T TIGR01883 288 QHPLMNIFKKAAKKIGLKTSEIF-----SGGGSDANVL-NEKGVPTVNLSAGYVHAHTEKETISIEQLVKLAELVIALA 360 (361)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEe-----cCcccHHHHH-hhCCCceEEECCCcccCcCcceeEEHHHHHHHHHHHHHHh
Confidence 55788888888888888877533 2577776555 3469999999999999999999999999999999998876
No 15
>PRK08596 acetylornithine deacetylase; Validated
Probab=97.71 E-value=0.00047 Score=72.29 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=45.5
Q ss_pred CCCChHHHHhcCCCCcEEEechhh-hccchHHhhcCHHHHHHHHHHHHHHHHHhhhhh
Q 013257 384 CGSTIGPILASGVGIRTVDVGAPQ-LSMHSIREMCAVDDVKHSYEHFKAFFQEFSELD 440 (447)
Q Consensus 384 ~G~T~g~i~~a~~Gi~t~digiP~-ryMHS~~E~~~~~Di~~~~~ll~~f~~~~~~~~ 440 (447)
+|+|++.+. ...|+|++.+|.-- ..+|++.|-+.++|+..+++++.+++.+|-...
T Consensus 363 ~g~tD~~~~-~~~gip~v~~Gpg~~~~~H~~~E~v~i~~~~~~~~~~~~~l~~~~~~~ 419 (421)
T PRK08596 363 TTVTDGGWF-AEFGIPAVIYGPGTLEEAHSVNEKVEIEQLIEYTKVITAFIYEWCHTK 419 (421)
T ss_pred eeecchhhh-hhcCCCEEEECCCcccccCCCCceEEHHHHHHHHHHHHHHHHHHhCCC
Confidence 356666555 45899999998653 468999999999999999999999998876544
No 16
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=97.57 E-value=0.00054 Score=69.48 Aligned_cols=79 Identities=15% Similarity=0.065 Sum_probs=61.4
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhh-hccchHHhhcCHHHHHHHHHHHHHH
Q 013257 354 TNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQ-LSMHSIREMCAVDDVKHSYEHFKAF 432 (447)
Q Consensus 354 t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~-ryMHS~~E~~~~~Di~~~~~ll~~f 432 (447)
.+..+.+.+++.+++.+.+..... ..|+|++.+.....|+|++.+|.-. ..+|++.|-++++|++.+++++..+
T Consensus 255 ~~~~lv~~~~~a~~~~~~~~~~~~-----~~g~tD~~~~~~~~g~p~v~~Gpg~~~~aH~~nE~v~i~~l~~~~~~~~~~ 329 (336)
T TIGR01902 255 RNNPLVRAFVRAIRKQGMKPRLKK-----KTGTSDMNILAPIWTVPMVAYGPGDSTLDHTPQEKISLAEYLIGIKTLMLA 329 (336)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEee-----ccccCccceeccccCCCeEEECCCCcccCCCCcceeEHHHHHHHHHHHHHH
Confidence 456788889988988877655433 2466777655334599999999653 3589999999999999999999999
Q ss_pred HHHhh
Q 013257 433 FQEFS 437 (447)
Q Consensus 433 ~~~~~ 437 (447)
+.++.
T Consensus 330 l~~l~ 334 (336)
T TIGR01902 330 IEELW 334 (336)
T ss_pred HHHHh
Confidence 98764
No 17
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=97.55 E-value=0.001 Score=67.82 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhhh-ccchHHhhcCHHHHHHHHHHHHHHHH
Q 013257 356 AVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQL-SMHSIREMCAVDDVKHSYEHFKAFFQ 434 (447)
Q Consensus 356 ~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~r-yMHS~~E~~~~~Di~~~~~ll~~f~~ 434 (447)
..+.+.+.+.+++.+.+.+... .+|+|++.+. ++.|+|++..|.-.. .+|++.|-++++|+..+++++..++.
T Consensus 267 ~~lv~~l~~a~~~~g~~~~~~~-----~~g~tD~~~~-~~~~~~~v~fGpg~~~~aH~~nE~i~i~~l~~~~~~~~~~i~ 340 (346)
T PRK00466 267 NPVVKALMRALLKQNIKPRLVR-----KAGTSDMNIL-QKITTSIATYGPGNSMLEHTNQEKITLDEIYIAVKTYMLAIE 340 (346)
T ss_pred CHHHHHHHHHHHHhCCCceEEe-----cCCcCcHHHH-HHhCCCEEEECCCCcccccCCCceeeHHHHHHHHHHHHHHHH
Confidence 4566777777777777655443 2466765544 456788888885433 38999999999999999999999987
Q ss_pred Hhh
Q 013257 435 EFS 437 (447)
Q Consensus 435 ~~~ 437 (447)
.|-
T Consensus 341 ~l~ 343 (346)
T PRK00466 341 ELW 343 (346)
T ss_pred HHH
Confidence 764
No 18
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=97.51 E-value=0.0015 Score=69.67 Aligned_cols=78 Identities=14% Similarity=0.121 Sum_probs=59.3
Q ss_pred cCHHHHHHHHHHHHh-CCCCEEEEEeecCCCCCCChHHH-HhcCCCCcEEEechhhhccchHHhhcCHHHHHHHHHHHHH
Q 013257 354 TNAVTSFVFREVASK-HNLPVQDFVVRNDMACGSTIGPI-LASGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKA 431 (447)
Q Consensus 354 t~~~~~~~l~~~a~~-~~Ip~Q~~~~r~d~~~G~T~g~i-~~a~~Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~ 431 (447)
.|..+...+.+.+++ .|.+...... +|+|.+.+ ...-.|+|++.+|.+.-.+|++.|-++++|+...++++..
T Consensus 397 ~d~plv~~l~~a~~~~~g~~~~~~~~-----~Ggtd~~~~~~~~~~i~~v~~Gp~~~~~H~~nE~i~i~~l~~~~~~~~~ 471 (477)
T TIGR01893 397 PQSNLLDTARKVYSEMFGEDPEVKVI-----HAGLECGIISSKIPDIDMISIGPNIYDPHSPNERVSISSVEKVWDFLVK 471 (477)
T ss_pred CCCHHHHHHHHHHHHHHCCCCeEEEe-----ecCccHHHHHhhCCCceEEEeCCCCCCCCCCCceeeHHHHHHHHHHHHH
Confidence 455677777777775 4777665442 35564433 3333589999999999999999999999999999999999
Q ss_pred HHHHh
Q 013257 432 FFQEF 436 (447)
Q Consensus 432 f~~~~ 436 (447)
++..+
T Consensus 472 ll~~~ 476 (477)
T TIGR01893 472 VLERL 476 (477)
T ss_pred HHHhc
Confidence 99765
No 19
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=97.35 E-value=0.00042 Score=71.00 Aligned_cols=135 Identities=15% Similarity=0.008 Sum_probs=77.5
Q ss_pred ecccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcccccccCCcchhhHHHHHhhccCCChHHHHHhhh
Q 013257 230 SGRLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQGAGSPAMLDALSRITNSFCSNSKLIEKAIQ 309 (447)
Q Consensus 230 ~kalDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~gA~~~~~pd~l~ri~~~~~~~~~~~~~~~~ 309 (447)
=.+.||..||++++++++.+.+. .....+.+++++.||+|+.|++-.....-+.-++++
T Consensus 139 ~GA~DnasGvA~lLe~ar~l~~~-----~~~~~I~fv~~~~EE~Gl~GS~~~~~~~~~~~~~~~---------------- 197 (346)
T PRK10199 139 QGMDDNAAGLGVMLELAERLKNV-----PTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNT---------------- 197 (346)
T ss_pred CCccccHHHHHHHHHHHHHHhhC-----CCCCcEEEEEECCcccCcHHHHHHHHhcCccchhcE----------------
Confidence 45789999999999999877531 123468899999999999988865443222111111
Q ss_pred cceEEEEecCCCCCCCCCCCCCCCCCCccCCccEEEEcCCCccccCHHHHHHHHHHHHhCCCCEEEEEeecC-CCCC--C
Q 013257 310 RSFLVSADMAHALHPNYMDKHEDNHQPKLHGGLVIKHNANQRYATNAVTSFVFREVASKHNLPVQDFVVRND-MACG--S 386 (447)
Q Consensus 310 ~s~aIs~Dv~ha~~P~~~~~~~~~~~~~LG~Gp~ik~~~~~~~~t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d-~~~G--~ 386 (447)
-++|-+|+.-..| ...+|.|. +.-.......+..+.++|++.|++++.....+. -+-| .
T Consensus 198 -~~~iNlD~~~~~d-----------~~~~~~g~------~~~~~~~~~~~d~~~~~a~~~g~~~~~~~~~~~~~p~g~~~ 259 (346)
T PRK10199 198 -LLVINLDNLIVGD-----------KLYFNSGV------NTPEAVRKLTRDRALAIARRHGIAATTNPGLNKNYPKGTGC 259 (346)
T ss_pred -EEEEEeccCCCCC-----------ceEEecCC------CcHHHHhHHHHHHHHHHHHHcCCccccCCCccccccCCCcC
Confidence 1468888653211 22334332 000000122456788999999997764332110 0011 1
Q ss_pred ChHHHHhcCCCCcEEEe
Q 013257 387 TIGPILASGVGIRTVDV 403 (447)
Q Consensus 387 T~g~i~~a~~Gi~t~di 403 (447)
-.+-...++.|||++.+
T Consensus 260 rSDH~~F~~~GIP~l~~ 276 (346)
T PRK10199 260 CNDAEVFDKAGIPVLSV 276 (346)
T ss_pred CcccHHHHhcCCCeEEe
Confidence 12333446788888777
No 20
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=97.30 E-value=0.00025 Score=65.16 Aligned_cols=154 Identities=14% Similarity=0.058 Sum_probs=84.4
Q ss_pred EeecccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcccccccCCcchhhHHHHHhhccCCChHHHHHh
Q 013257 228 IFSGRLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQGAGSPAMLDALSRITNSFCSNSKLIEKA 307 (447)
Q Consensus 228 i~~kalDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~gA~~~~~pd~l~ri~~~~~~~~~~~~~~ 307 (447)
..-.+.||-+||++++|.++.+.+.+ ...+..+.+++|+.||.|+.|++.-... .+..+.
T Consensus 20 ~~~GA~DnasGva~lLelAr~l~~~~---~~~~~~i~fv~~~~EE~gl~GS~~~~~~-~~~~~~---------------- 79 (179)
T PF04389_consen 20 WSPGANDNASGVAALLELARVLKELK---PQPKRTIRFVFFDGEEQGLLGSRAFVEH-DHEELD---------------- 79 (179)
T ss_dssp SSS-TTTTHHHHHHHHHHHHHHHHST---HSSSEEEEEEEESSGGGTSHHHHHHHHH-HHCHHH----------------
T ss_pred ccCCcccchHHHHHHHHHHHHHHHhh---cccCccEEEEEecccccCccchHHHHHh-hhcccc----------------
Confidence 56778999999999999888775311 1134578899999999999988764431 112121
Q ss_pred hhcceEEEEecCCCCCCCCCCCCCCCCCCccCCccEEEEcCCCccccCHHHHHHHHHHHHhCCCCEEEEEe-ecCCCCCC
Q 013257 308 IQRSFLVSADMAHALHPNYMDKHEDNHQPKLHGGLVIKHNANQRYATNAVTSFVFREVASKHNLPVQDFVV-RNDMACGS 386 (447)
Q Consensus 308 ~~~s~aIs~Dv~ha~~P~~~~~~~~~~~~~LG~Gp~ik~~~~~~~~t~~~~~~~l~~~a~~~~Ip~Q~~~~-r~d~~~G~ 386 (447)
+-..+|.+|+.-..++ .+...... .....+.+.+.++++.....++.... .....+++
T Consensus 80 -~~~~~inlD~~g~~~~------------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 138 (179)
T PF04389_consen 80 -NIAAVINLDMIGSGDP------------------TVYSEGSP--SLPSRLEAYLSSFKQPYGSSLGPDVPPEKPTFGGS 138 (179)
T ss_dssp -HEEEEEEECSSBSSSS------------------EEEEEEGG--GHHHHHHHHHHHHHHHHHCHTSSECEEEESSTTSS
T ss_pred -cceeEEeccccccCcc------------------cceeeeec--cccchhhhhhhhhhhhhhcccccccccccCCCCCC
Confidence 2235788886543221 11111100 00122555555554442222222111 11123344
Q ss_pred ChHHHHhcCCCCcEEEechh---hhccchHHhhcCHHHHHH
Q 013257 387 TIGPILASGVGIRTVDVGAP---QLSMHSIREMCAVDDVKH 424 (447)
Q Consensus 387 T~g~i~~a~~Gi~t~digiP---~ryMHS~~E~~~~~Di~~ 424 (447)
+.-++. ..|||++.+.-= ..+-||+.-+++.-|.+.
T Consensus 139 D~~~F~--~~gip~~~~~~~~~~~~~~Ht~~Dt~~~~~~~~ 177 (179)
T PF04389_consen 139 DHYPFS--KAGIPAVTLSSTDGYNPYYHTPEDTPDNLDPDT 177 (179)
T ss_dssp TCHHHH--TTT-EEEEEEESSSSGTTTTSTT-SGGGC-HHH
T ss_pred CcHhhh--cCCEeEEEEEecCCCCCCCCCcccChhhcCCcc
Confidence 456775 999999876533 366688887777666554
No 21
>PRK05469 peptidase T; Provisional
Probab=97.00 E-value=0.0016 Score=67.86 Aligned_cols=80 Identities=13% Similarity=0.067 Sum_probs=66.4
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhhhccchHHhhcCHHHHHHHHHHHHHHH
Q 013257 354 TNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFF 433 (447)
Q Consensus 354 t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f~ 433 (447)
.|+.+.+.+++.+++.+++.+... ..|+|++.+. +..|||++.+|.+...+|++.|.++++|+..+++++..++
T Consensus 328 ~~~~lv~~~~~a~~~~g~~~~~~~-----~~ggtD~~~~-~~~giP~v~~gpG~~~~H~~~E~v~i~~l~~~~~~~~~~~ 401 (408)
T PRK05469 328 PHPHIVDLAKQAMEDLGIEPIIKP-----IRGGTDGSQL-SFMGLPCPNIFTGGHNFHGKFEFVSLESMEKAVEVIVEIA 401 (408)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEec-----CCCcccHHHH-hhCCCceEEECcCcccCcCcceeeEHHHHHHHHHHHHHHH
Confidence 467899999999999998877432 2467766554 3479999999998989999999999999999999999999
Q ss_pred HHhhhh
Q 013257 434 QEFSEL 439 (447)
Q Consensus 434 ~~~~~~ 439 (447)
..|.+.
T Consensus 402 ~~~~~~ 407 (408)
T PRK05469 402 ELTAER 407 (408)
T ss_pred HHHhcC
Confidence 887653
No 22
>PRK05111 acetylornithine deacetylase; Provisional
Probab=96.92 E-value=0.013 Score=60.25 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=42.7
Q ss_pred CCChHHHHhcCCCCcEEEechhh-hccchHHhhcCHHHHHHHHHHHHHHHHHh
Q 013257 385 GSTIGPILASGVGIRTVDVGAPQ-LSMHSIREMCAVDDVKHSYEHFKAFFQEF 436 (447)
Q Consensus 385 G~T~g~i~~a~~Gi~t~digiP~-ryMHS~~E~~~~~Di~~~~~ll~~f~~~~ 436 (447)
++|++++. ...|+|++.+|... -.+|++.|-++.+|+...++++..++..+
T Consensus 329 ~~~Da~~~-~~~g~p~v~~G~g~~~~~H~~~E~v~~~~l~~~~~i~~~~~~~~ 380 (383)
T PRK05111 329 YCTEAPFI-QQLGCPTLVLGPGSIEQAHQPDEYLELSFIKPTRELLRQLIHHF 380 (383)
T ss_pred eeccHHHH-HhcCCCEEEECCCchHhCcCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 45555554 56799999999875 45899999999999999999999998776
No 23
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=96.89 E-value=0.0033 Score=65.78 Aligned_cols=53 Identities=25% Similarity=0.212 Sum_probs=45.8
Q ss_pred CCCChHHHHhcCCCCcEEEechhhhccchHHhhcCHHHHHHHHHHHHHHHHHhh
Q 013257 384 CGSTIGPILASGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQEFS 437 (447)
Q Consensus 384 ~G~T~g~i~~a~~Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f~~~~~ 437 (447)
.|+|++.+. +..|+|++.+|.-...+|++.|.++++|+..+++++..+++.+.
T Consensus 355 ~ggtDa~~~-~~~Gip~~~~G~G~~~aHt~dE~v~i~~l~~~~~~~~~li~~~~ 407 (410)
T TIGR01882 355 RGGTDGSQL-SYMGLPTPNIFAGGENMHGRFEYISVDNMVKAVDVIVEIAKLNE 407 (410)
T ss_pred ceechHHHH-HhCCCCCCeEcCCcccCcCCceEEEHHHHHHHHHHHHHHHHHHh
Confidence 467877766 56799999999877779999999999999999999999998764
No 24
>PRK13381 peptidase T; Provisional
Probab=96.87 E-value=0.0024 Score=66.51 Aligned_cols=78 Identities=18% Similarity=0.109 Sum_probs=64.3
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhhhccchHHhhcCHHHHHHHHHHHHHHH
Q 013257 354 TNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFF 433 (447)
Q Consensus 354 t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f~ 433 (447)
.|..+.+.+++.+++.+++.+... ..|+|++.+. ...|||++.+|.+...+|++.|-++++|++.+++++..++
T Consensus 326 ~~~~lv~~l~~a~~~~g~~~~~~~-----~~g~tDa~~~-~~~giP~v~~GpG~~~aH~~dE~v~i~~l~~~~~v~~~~~ 399 (404)
T PRK13381 326 DDRRAVDLAFDAMKELGIEPKVIP-----MRGGTDGAAL-SAKGLPTPNLFTGAHNFHSRFEFLPVSSFVKSYEVTITIC 399 (404)
T ss_pred cCHHHHHHHHHHHHHcCCCeeecc-----CCccchHHHH-hcCCCCeEEECccccCCcCcceeEEHHHHHHHHHHHHHHH
Confidence 367888899999998888876533 2466766554 3469999999999999999999999999999999999998
Q ss_pred HHhh
Q 013257 434 QEFS 437 (447)
Q Consensus 434 ~~~~ 437 (447)
..+.
T Consensus 400 ~~~~ 403 (404)
T PRK13381 400 LLAA 403 (404)
T ss_pred HHhc
Confidence 7763
No 25
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=96.62 E-value=0.0046 Score=64.75 Aligned_cols=78 Identities=13% Similarity=-0.008 Sum_probs=64.1
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhhhcc--chHHhhcCHHHHHHHHHHHHH
Q 013257 354 TNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQLSM--HSIREMCAVDDVKHSYEHFKA 431 (447)
Q Consensus 354 t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~ryM--HS~~E~~~~~Di~~~~~ll~~ 431 (447)
.|..+.+.+++.+++.+++.+... .+|+|++.+. ..|+|++.+..|...+ |++.|.++++|+...++++..
T Consensus 331 ~d~~lv~~l~~a~~~~G~~~~~~~-----~~ggtDa~~~--~~giPt~~~~gp~~~~~aH~~dE~v~i~~l~~~~~il~~ 403 (414)
T PRK12891 331 FAPGCIDAVRDAARALGLSHMDIV-----SGAGHDACFA--ARGAPTGMIFVPCVDGLSHNEAEAITPEWFAAGADVLLR 403 (414)
T ss_pred CCHHHHHHHHHHHHHcCCCceecC-----CcchHHHHHH--HhhCCEEEEEEcCCCCCCCCccccCCHHHHHHHHHHHHH
Confidence 467899999999999999887533 2567775543 3499998888888865 999999999999999999999
Q ss_pred HHHHhhh
Q 013257 432 FFQEFSE 438 (447)
Q Consensus 432 f~~~~~~ 438 (447)
++..+..
T Consensus 404 ~l~~~~~ 410 (414)
T PRK12891 404 AVLQSAQ 410 (414)
T ss_pred HHHHHhh
Confidence 9988754
No 26
>PRK08554 peptidase; Reviewed
Probab=96.55 E-value=0.0051 Score=65.17 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=65.4
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhhhccchHHhhcCHHHHHHHHHHHHHHH
Q 013257 354 TNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFF 433 (447)
Q Consensus 354 t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f~ 433 (447)
.+..+.+.+.+++++.+++.+... .+|+|++.+. +..|+|++++|.---.+|++.|-+.++++..+.+++..++
T Consensus 360 ~~~~lv~~~~~~~~~~g~~~~~~~-----~~GgtDa~~~-~~~Gip~v~~Gp~~~~~H~~~E~v~i~~l~~~~~i~~~~i 433 (438)
T PRK08554 360 PDEEIVKVALRVLKELGEDAEPVE-----GPGASDSRYF-TPYGVKAIDFGPKGGNIHGPNEYVEIDSLKKMPEVYKRIA 433 (438)
T ss_pred CChHHHHHHHHHHHHhCCCcEEEe-----cCCchHHHHH-HhcCCCceEECCCCCCCCCCcceEEHHHHHHHHHHHHHHH
Confidence 367899999999999999887654 3677888775 4568999999996678999999999999999999999988
Q ss_pred HHh
Q 013257 434 QEF 436 (447)
Q Consensus 434 ~~~ 436 (447)
..|
T Consensus 434 ~~l 436 (438)
T PRK08554 434 LRL 436 (438)
T ss_pred HHH
Confidence 665
No 27
>PRK07338 hypothetical protein; Provisional
Probab=95.97 E-value=0.012 Score=61.14 Aligned_cols=78 Identities=17% Similarity=0.166 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEE-echhhhccchHHhhcCHHHHHHHHHHHHHHH
Q 013257 355 NAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVD-VGAPQLSMHSIREMCAVDDVKHSYEHFKAFF 433 (447)
Q Consensus 355 ~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~d-igiP~ryMHS~~E~~~~~Di~~~~~ll~~f~ 433 (447)
++.+.+.+++.+++.+++..... .+|+|++.+.. ..|||+++ +|.---.+|++.|-++++|+...++++..++
T Consensus 321 ~~~l~~~~~~~~~~~g~~~~~~~-----~~g~tDa~~~~-~~giP~v~~~Gpg~~~~H~~~E~v~i~~l~~~~~~~~~~l 394 (402)
T PRK07338 321 QQRLFEAVQACGAALGLTIDWKD-----SGGVCDGNNLA-AAGLPVVDTLGVRGGNIHSEDEFVILDSLVERAQLSALIL 394 (402)
T ss_pred hHHHHHHHHHHHHHcCCCccccc-----CCccchHHHHh-hcCCCeEeccCCCCCCCCCccceEehhhHHHHHHHHHHHH
Confidence 45799999999999998876443 25677766653 47999995 7776567899999999999999999999999
Q ss_pred HHhhh
Q 013257 434 QEFSE 438 (447)
Q Consensus 434 ~~~~~ 438 (447)
..|..
T Consensus 395 ~~~~~ 399 (402)
T PRK07338 395 MRLAQ 399 (402)
T ss_pred HHHhc
Confidence 88754
No 28
>PRK08652 acetylornithine deacetylase; Provisional
Probab=95.85 E-value=0.012 Score=59.56 Aligned_cols=78 Identities=18% Similarity=0.066 Sum_probs=61.4
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhh-hccchHHhhcCHHHHHHHHHHHHHH
Q 013257 354 TNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQ-LSMHSIREMCAVDDVKHSYEHFKAF 432 (447)
Q Consensus 354 t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~-ryMHS~~E~~~~~Di~~~~~ll~~f 432 (447)
.|+.+.+.+.+.+++.|++..... .+|+|++... ++.|+|++..|.-. ..+|++.|-++++|+...++++..+
T Consensus 267 ~~~~lv~~l~~a~~~~g~~~~~~~-----~~g~tDa~~~-~~~gip~v~~Gpg~~~~~H~~nE~i~i~~l~~~~~~l~~~ 340 (347)
T PRK08652 267 EDEEIVQLLEKAMKEVGLEPEFTV-----MRSWTDAINF-RYNGTKTVVWGPGELDLCHTKFERIDVREVEKAKEFLKAL 340 (347)
T ss_pred CCCHHHHHHHHHHHHhCCCCCcCc-----CCccchhHHH-HHCCCCEEEECCCchhhcCCCCceeeHHHHHHHHHHHHHH
Confidence 367899999999998888865433 2456766554 45699999999533 3689999999999999999999999
Q ss_pred HHHhh
Q 013257 433 FQEFS 437 (447)
Q Consensus 433 ~~~~~ 437 (447)
++.+-
T Consensus 341 ~~~~~ 345 (347)
T PRK08652 341 NEILL 345 (347)
T ss_pred HHHHh
Confidence 87664
No 29
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=95.82 E-value=0.02 Score=59.88 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=61.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhhhc--cchHHhhcCHHHHHHHHHHHHH
Q 013257 354 TNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQLS--MHSIREMCAVDDVKHSYEHFKA 431 (447)
Q Consensus 354 t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~ry--MHS~~E~~~~~Di~~~~~ll~~ 431 (447)
.|..+.+.+++.+++.+.+.+... .+|+|++.+.. .|+|++.+..|... +|++.|.++++++..+++++..
T Consensus 332 ~d~~lv~~l~~a~~~~g~~~~~~~-----~~g~tDa~~~~--~~iP~~~~~gp~~~~~~H~~dE~v~i~~l~~~~~v~~~ 404 (413)
T PRK09290 332 FDPGLVAALEEAAERLGLSYRRLP-----SGAGHDAQILA--AVVPTAMIFVPSVGGISHNPAEFTSPEDCAAGANVLLH 404 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCccccC-----CccchHHHHHh--ccCCEEEEEeccCCCCCCCccccCCHHHHHHHHHHHHH
Confidence 467899999999988887755422 24677665542 37999888888665 8999999999999999999999
Q ss_pred HHHHhh
Q 013257 432 FFQEFS 437 (447)
Q Consensus 432 f~~~~~ 437 (447)
++..|-
T Consensus 405 ~l~~l~ 410 (413)
T PRK09290 405 ALLELA 410 (413)
T ss_pred HHHHHh
Confidence 987764
No 30
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=95.79 E-value=0.012 Score=61.51 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=35.4
Q ss_pred CceEeecccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCccccc
Q 013257 225 KEFIFSGRLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQ 279 (447)
Q Consensus 225 ~~~i~~kalDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~ 279 (447)
+..+.| -|++.|+++++.+++.+.+.. .. .+..+.++|+..||+| +|+.
T Consensus 135 g~~l~G--~D~KgglAa~l~A~~~L~e~~-~~--~~g~I~~~ft~dEE~g-~Ga~ 183 (410)
T TIGR01882 135 GTTLLG--ADDKAGIAEIMTAADYLINHP-EI--KHGTIRVAFTPDEEIG-RGAH 183 (410)
T ss_pred CCEeec--ccCHHHHHHHHHHHHHHHhCC-CC--CCCCEEEEEECcccCC-cCcc
Confidence 445667 999999999999888775310 11 2456889999999987 4543
No 31
>PRK07473 carboxypeptidase; Provisional
Probab=95.74 E-value=0.011 Score=61.18 Aligned_cols=75 Identities=20% Similarity=0.271 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEE-echhhhccchHHhhcCHHHHHHHHHHHHHHHH
Q 013257 356 AVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVD-VGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQ 434 (447)
Q Consensus 356 ~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~d-igiP~ryMHS~~E~~~~~Di~~~~~ll~~f~~ 434 (447)
+.+.+.+++.++..+++..... .+|+|++.+.. ..||||++ +|.---.+|++.|-++++|+..+++++..++.
T Consensus 300 ~~l~~~~~~~~~~~g~~~~~~~-----~~g~tDa~~~~-~~giP~v~g~Gpg~~~~H~~dE~v~i~~l~~~~~vl~~~l~ 373 (376)
T PRK07473 300 MALYEKARAIAGQLGLSLPHGS-----AGGGSDGNFTG-AMGIPTLDGLGVRGADYHTLNEHIEVDSLAERGRLMAGLLA 373 (376)
T ss_pred HHHHHHHHHHHHHcCCCCcccc-----CccccHhhhHH-hcCCCEEEeccCCCCCCCCCCceEecccHHHHHHHHHHHHH
Confidence 4688889999999999877543 25778776653 46999998 87765678999999999999999999999986
Q ss_pred Hh
Q 013257 435 EF 436 (447)
Q Consensus 435 ~~ 436 (447)
.+
T Consensus 374 ~~ 375 (376)
T PRK07473 374 TL 375 (376)
T ss_pred hc
Confidence 54
No 32
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=95.72 E-value=0.025 Score=59.14 Aligned_cols=78 Identities=9% Similarity=0.100 Sum_probs=61.1
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhhhc--cchHHhhcCHHHHHHHHHHHHH
Q 013257 354 TNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQLS--MHSIREMCAVDDVKHSYEHFKA 431 (447)
Q Consensus 354 t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~ry--MHS~~E~~~~~Di~~~~~ll~~ 431 (447)
.|+.+.+.+.+.+++.+++.+... .+|+|++.+. ...| |++.+..|... +|++.|.++++|+..+++++..
T Consensus 333 ~~~~l~~~l~~~~~~~g~~~~~~~-----~~g~tDa~~~-~~~g-p~~~~~gp~~~~~aHs~dE~v~i~~l~~~~~i~~~ 405 (414)
T PRK12890 333 CDPALVDAVEAAAARLGYPSRRMP-----SGAGHDAAAI-ARIG-PSAMIFVPCRGGISHNPEEAMDPEDLAAGARVLLD 405 (414)
T ss_pred CCHHHHHHHHHHHHHcCCCceecC-----CcccHHHHHH-HhhC-CEEEEEecCCCCCCCCcCccCCHHHHHHHHHHHHH
Confidence 478899999999999998876432 2467765554 3456 67767777654 8999999999999999999999
Q ss_pred HHHHhhh
Q 013257 432 FFQEFSE 438 (447)
Q Consensus 432 f~~~~~~ 438 (447)
++..|.+
T Consensus 406 ll~~l~~ 412 (414)
T PRK12890 406 AVLRLDR 412 (414)
T ss_pred HHHHHhh
Confidence 9988753
No 33
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=95.64 E-value=0.021 Score=58.49 Aligned_cols=76 Identities=13% Similarity=0.297 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHh-CCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhhhccchHHhhcCHHHHHHHHHHHHHHH
Q 013257 355 NAVTSFVFREVASK-HNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFF 433 (447)
Q Consensus 355 ~~~~~~~l~~~a~~-~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f~ 433 (447)
+..+.+.+++.+++ .+.+.+... .+|+|++.+. .+.|+|++.+|..-..+|++.|-++++|+..+++++..++
T Consensus 294 ~~~~~~~~~~a~~~~~g~~~~~~~-----~~g~~d~~~~-~~~g~p~~~~Gp~~~~~H~~~E~i~i~~l~~~~~~~~~~l 367 (370)
T TIGR01246 294 DGKLIDKAREAIEETNGIKPELST-----GGGTSDGRFI-ALMGAEVVEFGPVNATIHKVNECVSIEDLEKLSDVYQDLL 367 (370)
T ss_pred CCHHHHHHHHHHHHHhCCCCceec-----CCCCchHHHH-HHcCCCEEEecCCcccCCCCCceeEHHHHHHHHHHHHHHH
Confidence 55677777777765 677765533 2577776655 3569999999999888999999999999999999999998
Q ss_pred HHh
Q 013257 434 QEF 436 (447)
Q Consensus 434 ~~~ 436 (447)
.+|
T Consensus 368 ~~~ 370 (370)
T TIGR01246 368 ENL 370 (370)
T ss_pred HhC
Confidence 764
No 34
>PRK06837 acetylornithine deacetylase; Provisional
Probab=95.41 E-value=0.029 Score=58.98 Aligned_cols=78 Identities=15% Similarity=0.228 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHh-CCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhhhccchHHhhcCHHHHHHHHHHHHHHH
Q 013257 355 NAVTSFVFREVASK-HNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFF 433 (447)
Q Consensus 355 ~~~~~~~l~~~a~~-~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f~ 433 (447)
|..+...+++.+++ .+.+.+.... +|+|++.+.....|+|++.+|..-..+|++.|-++++|+..+++++..++
T Consensus 344 ~~~~~~~~~~a~~~~~g~~~~~~~~-----~g~tDa~~~~~~~gip~v~~Gp~~~~~H~~nE~i~i~~l~~~~~~~~~~l 418 (427)
T PRK06837 344 GSEAEAALARAHAAVFGGPLRSFVT-----TAYTDTRFYGLYYGIPALCYGPSGEGIHGFDERVDLESVRKVTKTIALFV 418 (427)
T ss_pred CCHHHHHHHHHHHHHhCCCCeeeEE-----eeccchHHHhccCCCCEEEECCCCCccCCCCceEEHHHHHHHHHHHHHHH
Confidence 44677777777776 7888776543 46776655433479999999988778999999999999999999999998
Q ss_pred HHhh
Q 013257 434 QEFS 437 (447)
Q Consensus 434 ~~~~ 437 (447)
..+-
T Consensus 419 ~~~~ 422 (427)
T PRK06837 419 AEWC 422 (427)
T ss_pred HHHh
Confidence 7664
No 35
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=95.27 E-value=0.041 Score=56.75 Aligned_cols=75 Identities=11% Similarity=0.128 Sum_probs=60.6
Q ss_pred cCHHHHHHHHHHHHh-CCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhhhccchHHhhcCHHHHHHHHHHHHHH
Q 013257 354 TNAVTSFVFREVASK-HNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAF 432 (447)
Q Consensus 354 t~~~~~~~l~~~a~~-~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f 432 (447)
.|..+.+.+.+.+++ .+.+.+.... +|+|++.+. ...|+|++.+|..--.+|++.|-++++|++.+++++..+
T Consensus 323 ~~~~~v~~l~~a~~~~~g~~~~~~~~-----~g~td~~~~-~~~gip~v~~Gp~~~~~H~~nE~v~i~~l~~~~~~~~~~ 396 (400)
T PRK13983 323 PDSEIVKKLKRAIKEVRGIEPKVGGI-----GGGTVAAFL-RKKGYPAVVWSTLDETAHQPNEYAKISNLIEDAKVFALL 396 (400)
T ss_pred CCcHHHHHHHHHHHHhcCCCceeeee-----cCcHHHHHH-HHcCCCEEEeCCccccCCCCCceeeHHHHHHHHHHHHHH
Confidence 466788888877776 6787776542 467777665 357999999998888899999999999999999999988
Q ss_pred HH
Q 013257 433 FQ 434 (447)
Q Consensus 433 ~~ 434 (447)
+.
T Consensus 397 ~~ 398 (400)
T PRK13983 397 LL 398 (400)
T ss_pred Hh
Confidence 75
No 36
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=95.16 E-value=0.046 Score=56.73 Aligned_cols=78 Identities=10% Similarity=0.162 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechh---hhccchHHhhcCHHHHHHHHHHHHH
Q 013257 355 NAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAP---QLSMHSIREMCAVDDVKHSYEHFKA 431 (447)
Q Consensus 355 ~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP---~ryMHS~~E~~~~~Di~~~~~ll~~ 431 (447)
+..+...+++++++.+.+.+... .+|+|++.+. .+.|||++..|.- -...|++.|-++++|+..+++++..
T Consensus 319 ~~~lv~~l~~a~~~~~~~~~~~~-----~~g~tDa~~~-~~~gip~v~fgp~~~~~~~aH~~dE~i~i~~l~~~~~~~~~ 392 (400)
T TIGR01880 319 SNPWWVAFKDAVKEMGCTFKPEI-----LPGSTDSRYI-RAAGVPALGFSPMNNTPVLLHDHNEFLNEAVFLRGIEIYQT 392 (400)
T ss_pred CCHHHHHHHHHHHHcCCeeccee-----ecCcchHHHH-HhCCCCeEEECCccCCcccccCCCCceEHHHHHHHHHHHHH
Confidence 44677888999998876655432 2477877765 4579999876542 2258999999999999999999999
Q ss_pred HHHHhhh
Q 013257 432 FFQEFSE 438 (447)
Q Consensus 432 f~~~~~~ 438 (447)
++..+..
T Consensus 393 ~l~~~~~ 399 (400)
T TIGR01880 393 LISALAS 399 (400)
T ss_pred HHHHhhc
Confidence 9988754
No 37
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=94.90 E-value=0.11 Score=54.69 Aligned_cols=93 Identities=10% Similarity=0.155 Sum_probs=67.9
Q ss_pred CccEEEEc---CCCccccCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCCh-HHHHhcCCCCcEEEechhhhccchHHh
Q 013257 340 GGLVIKHN---ANQRYATNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTI-GPILASGVGIRTVDVGAPQLSMHSIRE 415 (447)
Q Consensus 340 ~Gp~ik~~---~~~~~~t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~-g~i~~a~~Gi~t~digiP~ryMHS~~E 415 (447)
.++.+... +...+-.++.+....++.+++.++.-.+..+| |||. |.+..-+..+|.+.+|- ...+||+.|
T Consensus 317 ~~~~~~~~~~Yp~~~~~~~~~iv~~a~~a~~~l~~~p~v~~i~-----gGtd~~~is~~g~p~~~i~~Gp-~~n~Hs~~E 390 (414)
T COG2195 317 AGAELEVKDSYPGWKIKPDSPLVDLAKKAYKELGIKPKVKPIH-----GGTDGGVLSFKGLPTPNISTGP-GENPHSPDE 390 (414)
T ss_pred cceEEEEeccccCcCCCCCchHHHHHHHHHHHhCCCceEEEee-----cccchhhhhccCCCCceEeccc-ccCCCCccc
Confidence 55555542 22334556789999999999999996666653 5665 54444444555555554 999999999
Q ss_pred hcCHHHHHHHHHHHHHHHHHhhh
Q 013257 416 MCAVDDVKHSYEHFKAFFQEFSE 438 (447)
Q Consensus 416 ~~~~~Di~~~~~ll~~f~~~~~~ 438 (447)
-+++.-++.+++++.++++.+..
T Consensus 391 ~v~I~s~ek~~~~l~~l~~~~~~ 413 (414)
T COG2195 391 FVSIESMEKAVQVLVELLKLAAA 413 (414)
T ss_pred eeehHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999987653
No 38
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=94.89 E-value=0.055 Score=55.21 Aligned_cols=77 Identities=12% Similarity=0.065 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhh-hccchHHhhcCHHHHHHHHHHHHHHH
Q 013257 355 NAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQ-LSMHSIREMCAVDDVKHSYEHFKAFF 433 (447)
Q Consensus 355 ~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~-ryMHS~~E~~~~~Di~~~~~ll~~f~ 433 (447)
+..+.+.+.+..++.+.+..... .+|+|++.+.....|+|++.+|... ..+|++.|-+.++|+..+++++..++
T Consensus 271 ~~~~~~~l~~~~~~~~~~~~~~~-----~~g~tD~~~~~~~~gip~v~~Gpg~~~~~H~~dE~i~i~~l~~~~~~~~~~~ 345 (348)
T PRK04443 271 RTPLARAFRVAIREAGGTPRLKR-----KTGTSDMNVVAPAWGCPMVAYGPGDSDLDHTPDEHLPLAEYLRAIAVLTDVL 345 (348)
T ss_pred CCHHHHHHHHHHHHhcCCcceec-----cccCCcHHHHhhhcCCCEEEECCCCccccCCCcccccHHHHHHHHHHHHHHH
Confidence 45688888888887655322211 2467766554334699999999764 45799999999999999999999998
Q ss_pred HHh
Q 013257 434 QEF 436 (447)
Q Consensus 434 ~~~ 436 (447)
..+
T Consensus 346 ~~l 348 (348)
T PRK04443 346 ERL 348 (348)
T ss_pred hhC
Confidence 653
No 39
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=94.41 E-value=0.091 Score=53.81 Aligned_cols=75 Identities=11% Similarity=0.213 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHh-CCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhhhccchHHhhcCHHHHHHHHHHHHHHHH
Q 013257 356 AVTSFVFREVASK-HNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQ 434 (447)
Q Consensus 356 ~~~~~~l~~~a~~-~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f~~ 434 (447)
..+.+.+++.+++ .+.+.+... .+|+|++.+. .+.|+|++.+|.--...|++.|-++++|+..+++++..++.
T Consensus 298 ~~~~~~l~~a~~~~~g~~~~~~~-----~~g~tda~~~-~~~g~p~v~~Gp~~~~~H~~~E~i~~~~l~~~~~~~~~~~~ 371 (375)
T PRK13009 298 GKLVDAVVAAIEAVTGITPELST-----SGGTSDARFI-ADYGAQVVEFGPVNATIHKVNECVSVADLEKLTRIYERILE 371 (375)
T ss_pred cHHHHHHHHHHHHHhCCCceeec-----cCCCccHHHH-HHcCCCeEEeccCcccCCCCCCcEEHHHHHHHHHHHHHHHH
Confidence 4567777777665 677766543 2566776655 34799999999665679999999999999999999999987
Q ss_pred Hh
Q 013257 435 EF 436 (447)
Q Consensus 435 ~~ 436 (447)
.|
T Consensus 372 ~~ 373 (375)
T PRK13009 372 RL 373 (375)
T ss_pred HH
Confidence 65
No 40
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=94.32 E-value=0.087 Score=54.38 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHh-CCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhh-hccchHHhhcCHHHHHHHHHHHHHH
Q 013257 355 NAVTSFVFREVASK-HNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQ-LSMHSIREMCAVDDVKHSYEHFKAF 432 (447)
Q Consensus 355 ~~~~~~~l~~~a~~-~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~-ryMHS~~E~~~~~Di~~~~~ll~~f 432 (447)
+..+.+.+++.+++ .+++...... .|+|++.+. ++.|||++.+|.-. ..+|++.|-++++++..+++++..+
T Consensus 313 ~~~l~~~~~~a~~~~~g~~~~~~~~-----~g~tD~~~~-~~~gip~v~~Gpg~~~~~H~~~E~i~~~~l~~~~~i~~~~ 386 (394)
T PRK08651 313 DSELVKALREAIREVLGVEPKKTIS-----LGGTDARFF-GAKGIPTVVYGPGELELAHAPDEYVEVKDVEKAAKVYEEV 386 (394)
T ss_pred CCHHHHHHHHHHHHHhCCCCceeee-----cCcccHHHH-hhCCCcEEEECCCChHhcCCCCceeEHHHHHHHHHHHHHH
Confidence 44688888888877 7877664432 467776554 46799999887744 3699999999999999999999999
Q ss_pred HHHhh
Q 013257 433 FQEFS 437 (447)
Q Consensus 433 ~~~~~ 437 (447)
+..+.
T Consensus 387 i~~l~ 391 (394)
T PRK08651 387 LKRLA 391 (394)
T ss_pred HHHhh
Confidence 98774
No 41
>PRK06915 acetylornithine deacetylase; Validated
Probab=94.20 E-value=0.094 Score=54.84 Aligned_cols=80 Identities=15% Similarity=0.052 Sum_probs=60.9
Q ss_pred cCHHHHHHHHHHHHh-CCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechh-hhccchHHhhcCHHHHHHHHHHHHH
Q 013257 354 TNAVTSFVFREVASK-HNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAP-QLSMHSIREMCAVDDVKHSYEHFKA 431 (447)
Q Consensus 354 t~~~~~~~l~~~a~~-~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP-~ryMHS~~E~~~~~Di~~~~~ll~~ 431 (447)
.|..+...+++++++ .+.+..... .+|+|++.......|+|++..|.. ...+|++.|-++++|+..+++++.+
T Consensus 338 ~d~~lv~~l~~a~~~~~G~~~~~~~-----~~g~tD~~~~~~~~giP~v~fGpg~~~~aH~~dE~v~~~~l~~~~~~~~~ 412 (422)
T PRK06915 338 ENHPLMTTLEHNFVEIEGNKPIIEA-----SPWGTDGGLLTQIAGVPTIVFGPGETKVAHYPNEYIEVDKMIAAAKIIAL 412 (422)
T ss_pred CCCHHHHHHHHHHHHHhCCCCeece-----eeeeccHHHHhccCCCCEEEECCCCccccCCCCceeEHHHHHHHHHHHHH
Confidence 366788888888888 477655433 246676655533349999999874 3468999999999999999999999
Q ss_pred HHHHhhh
Q 013257 432 FFQEFSE 438 (447)
Q Consensus 432 f~~~~~~ 438 (447)
++.++-.
T Consensus 413 ll~~~~~ 419 (422)
T PRK06915 413 TLLDWCE 419 (422)
T ss_pred HHHHHhC
Confidence 9977644
No 42
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=94.17 E-value=0.1 Score=53.68 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHh-CCCCEEEEEeecCCCCCCChHH-HHhcCCCCcEEEechh-hhccchHHhhcCHHHHHHHHHHHHH
Q 013257 355 NAVTSFVFREVASK-HNLPVQDFVVRNDMACGSTIGP-ILASGVGIRTVDVGAP-QLSMHSIREMCAVDDVKHSYEHFKA 431 (447)
Q Consensus 355 ~~~~~~~l~~~a~~-~~Ip~Q~~~~r~d~~~G~T~g~-i~~a~~Gi~t~digiP-~ryMHS~~E~~~~~Di~~~~~ll~~ 431 (447)
+..+.+.+++.+++ .+.+..... ..|+|++. +.....|+|++.+|.- ...+|++.|-++++|+..+++++..
T Consensus 296 ~~~l~~~~~~~~~~~~g~~~~~~~-----~~g~tD~~~~~~~~~~ip~i~~Gpg~~~~~H~~~E~i~~~~l~~~~~~~~~ 370 (377)
T PRK08588 296 DSKLVQLAKDVAKSYVGQDIPLSA-----IPGATDASSFLKKKPDFPVIIFGPGNNLTAHQVDEYVEKDMYLKFIDIYKE 370 (377)
T ss_pred CCHHHHHHHHHHHHhhCCCCceec-----CCCcccHHHHhhhcCCCCEEEECCCCCccCCCCCceeEHHHHHHHHHHHHH
Confidence 45788888888877 677655432 24667654 4423469999999966 4679999999999999999999999
Q ss_pred HHHHh
Q 013257 432 FFQEF 436 (447)
Q Consensus 432 f~~~~ 436 (447)
++.++
T Consensus 371 ~~~~~ 375 (377)
T PRK08588 371 IIIQY 375 (377)
T ss_pred HHHHH
Confidence 98765
No 43
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=94.15 E-value=0.097 Score=54.55 Aligned_cols=76 Identities=14% Similarity=0.026 Sum_probs=57.0
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhh--hccchHHhhcCHHHHHHHHHHHHH
Q 013257 354 TNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQ--LSMHSIREMCAVDDVKHSYEHFKA 431 (447)
Q Consensus 354 t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~--ryMHS~~E~~~~~Di~~~~~ll~~ 431 (447)
.|+.+.+.+++.+++.+.+.+... .+|+|++.+.. +. +|++.+..|. -.+|++.|.++++|+..+++++..
T Consensus 331 ~d~~l~~~l~~~~~~~g~~~~~~~-----~~g~tD~~~~~-~~-~p~~v~~gp~~~~~~Hs~dE~v~i~~l~~~~~i~~~ 403 (412)
T PRK12893 331 FDPALVALVEAAAEALGLSHMRMV-----SGAGHDAMFLA-RV-APAAMIFVPCRGGISHNEAEDTEPADLAAGANVLLH 403 (412)
T ss_pred CCHHHHHHHHHHHHHcCCCccccC-----CccHHHHHHHH-hh-CCEEEEEeecCCCCCCCccccCCHHHHHHHHHHHHH
Confidence 467889999999998888775422 25677665543 33 5654555564 347999999999999999999999
Q ss_pred HHHHh
Q 013257 432 FFQEF 436 (447)
Q Consensus 432 f~~~~ 436 (447)
++..+
T Consensus 404 ll~~~ 408 (412)
T PRK12893 404 AVLEL 408 (412)
T ss_pred HHHHh
Confidence 98776
No 44
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=94.12 E-value=0.11 Score=54.36 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=62.0
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhhh--ccchHHhhcCHHHHHHHHHHHHH
Q 013257 354 TNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQL--SMHSIREMCAVDDVKHSYEHFKA 431 (447)
Q Consensus 354 t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~r--yMHS~~E~~~~~Di~~~~~ll~~ 431 (447)
.|+.+.+.+++.|++.+.++.... .+|+|++.+... .+|++.+-+|.+ .+|++.|.++.+|+..+++++..
T Consensus 325 ~d~~lv~~l~~a~~~~~~~~~~~~-----sggg~Da~~~~~--~vP~~~ifgp~~~g~~H~p~E~v~~e~l~~g~~vl~~ 397 (406)
T TIGR03176 325 MNKEIVAIIEQLAKAEKLNYRLMH-----SGAGHDAQIFAP--RVPTAMIFVPSIGGISHNPAERTNIEDLVEGVKTLAD 397 (406)
T ss_pred CCHHHHHHHHHHHHHcCCCceecC-----cccHHHHHHHHH--HCCEEEEEEeCCCCCCCCccccCCHHHHHHHHHHHHH
Confidence 367899999999999888755422 356777655433 399998888874 57999999999999999999999
Q ss_pred HHHHhhh
Q 013257 432 FFQEFSE 438 (447)
Q Consensus 432 f~~~~~~ 438 (447)
++..+..
T Consensus 398 ~l~~l~~ 404 (406)
T TIGR03176 398 MLYELAY 404 (406)
T ss_pred HHHHHhc
Confidence 9987743
No 45
>PRK09133 hypothetical protein; Provisional
Probab=93.69 E-value=0.11 Score=55.32 Aligned_cols=77 Identities=17% Similarity=0.243 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHhC--CCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEec---hh--hhccchHHhhcCHHHHHHHHH
Q 013257 355 NAVTSFVFREVASKH--NLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVG---AP--QLSMHSIREMCAVDDVKHSYE 427 (447)
Q Consensus 355 ~~~~~~~l~~~a~~~--~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~dig---iP--~ryMHS~~E~~~~~Di~~~~~ 427 (447)
+..+.+.+++.+++. +++..... .+|+|++.+. .+.|+|++.++ .| ...+|++.|-++++|+..+++
T Consensus 386 ~~~l~~~l~~~~~~~~~g~~~~~~~-----~~ggtDa~~~-~~~gip~~~~~~i~gp~~~~~aH~~dE~v~i~~l~~~~~ 459 (472)
T PRK09133 386 RPDIMKAVEKLTAAMWPGVPVIPSM-----STGATDGRYL-RAAGIPTYGVSGLFGDPDDTFAHGLNERIPVASFYEGRD 459 (472)
T ss_pred CcHHHHHHHHHHHHHCCCCceeccc-----cccccchHHH-HhcCCCceeecCcccCcccccCCCCCCceeHHHHHHHHH
Confidence 567888888888876 77765433 2467777665 45799998632 22 346899999999999999999
Q ss_pred HHHHHHHHhh
Q 013257 428 HFKAFFQEFS 437 (447)
Q Consensus 428 ll~~f~~~~~ 437 (447)
++..++..+.
T Consensus 460 ~l~~~l~~l~ 469 (472)
T PRK09133 460 FLYELVKDLA 469 (472)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 46
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=93.64 E-value=0.12 Score=55.56 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=61.7
Q ss_pred cCHHHHHHHHHHHHh-CCCCEEEEEeecCCCCCCC-hHHHHhcCCCCcEEEechhhhccchHHhhcCHHHHHHHHHHHHH
Q 013257 354 TNAVTSFVFREVASK-HNLPVQDFVVRNDMACGST-IGPILASGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKA 431 (447)
Q Consensus 354 t~~~~~~~l~~~a~~-~~Ip~Q~~~~r~d~~~G~T-~g~i~~a~~Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~ 431 (447)
.|..+...+.++.++ .|-+-+.... .||+ .|-+.....|||++.+|.=...||||.|-+++++++.+.+++..
T Consensus 403 ~ds~lv~~l~~~y~e~~G~~~~~~~i-----haglEcG~~~~~~p~i~~VsfGP~~~~~HspdE~v~I~s~~~~~~~l~~ 477 (485)
T PRK15026 403 ANSPVMHLVRETYQRLFNKTPNIQII-----HAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGHYWTLLTE 477 (485)
T ss_pred CCCHHHHHHHHHHHHHHCCCCeEEEE-----EEEehHHHHHhhCCCCCEEEECCCCCCCCCCCcEEEhHHHHHHHHHHHH
Confidence 345666666666666 3455554432 2445 67777667899999999999999999999999999999999999
Q ss_pred HHHHhh
Q 013257 432 FFQEFS 437 (447)
Q Consensus 432 f~~~~~ 437 (447)
|++++.
T Consensus 478 ~l~~~~ 483 (485)
T PRK15026 478 LLKEIP 483 (485)
T ss_pred HHHhhh
Confidence 999873
No 47
>PRK13004 peptidase; Reviewed
Probab=93.52 E-value=0.076 Score=55.21 Aligned_cols=78 Identities=15% Similarity=0.022 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHhC-CCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhh-hccchHHhhcCHHHHHHHHHHHHHH
Q 013257 355 NAVTSFVFREVASKH-NLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQ-LSMHSIREMCAVDDVKHSYEHFKAF 432 (447)
Q Consensus 355 ~~~~~~~l~~~a~~~-~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~-ryMHS~~E~~~~~Di~~~~~ll~~f 432 (447)
+..+...+.+.+++. +.+..... ..++|.|.......|+|++.+|.-. -.+|++.|-+.++|+..+++++.++
T Consensus 317 ~~~~~~~l~~a~~~~~g~~~~~~~-----~~~~td~~~~~~~~Gip~v~~Gpg~~~~aH~~nE~i~i~~l~~~~~~~~~~ 391 (399)
T PRK13004 317 DHEFVKAAVEAYKGLFGKAPEVDK-----WTFSTNGVSIAGRAGIPTIGFGPGKEPLAHAPNEYTWKEQLVKAAAMYAAI 391 (399)
T ss_pred CCHHHHHHHHHHHHHhCCCCeecc-----cccccCCeEEehhcCCCEEEECCCcccccCCCCceeEHHHHHHHHHHHHHH
Confidence 456777888777765 76554322 1345544333345799999999643 3599999999999999999999999
Q ss_pred HHHhh
Q 013257 433 FQEFS 437 (447)
Q Consensus 433 ~~~~~ 437 (447)
+..|-
T Consensus 392 ~~~~~ 396 (399)
T PRK13004 392 PKSLL 396 (399)
T ss_pred HHHHh
Confidence 88764
No 48
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=93.41 E-value=0.14 Score=53.31 Aligned_cols=76 Identities=12% Similarity=0.083 Sum_probs=58.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhhh--ccchHHhhcCHHHHHHHHHHHHH
Q 013257 354 TNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQL--SMHSIREMCAVDDVKHSYEHFKA 431 (447)
Q Consensus 354 t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~r--yMHS~~E~~~~~Di~~~~~ll~~ 431 (447)
.|..+.+.+++.+++.+.+..... .+|+|++.+... . +|++.+..|.. .+|++.|-++++++...++++..
T Consensus 332 ~d~~lv~~~~~a~~~~g~~~~~~~-----~~g~tDa~~~~~-~-ip~~~~~gp~~~~~~H~~~E~v~i~~l~~~~~il~~ 404 (412)
T PRK12892 332 CDAALVDALRAAAEAAGGPYLEMP-----SGAGHDAQNMAR-I-APSAMLFVPSKGGISHNPAEDTSPADLAQGARVLAD 404 (412)
T ss_pred CCHHHHHHHHHHHHHcCCCccccC-----cchHHHHHHHHh-H-CCEEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 467889999999998888765322 246776655433 3 89877667643 48999999999999999999999
Q ss_pred HHHHh
Q 013257 432 FFQEF 436 (447)
Q Consensus 432 f~~~~ 436 (447)
++..+
T Consensus 405 ~l~~~ 409 (412)
T PRK12892 405 TLRRL 409 (412)
T ss_pred HHHHh
Confidence 98765
No 49
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=93.26 E-value=0.16 Score=54.70 Aligned_cols=57 Identities=32% Similarity=0.255 Sum_probs=42.2
Q ss_pred chhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcccccccCCcchhhHHHHHhhccCCChHHHHHhhhcceE
Q 013257 234 DNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQGAGSPAMLDALSRITNSFCSNSKLIEKAIQRSFL 313 (447)
Q Consensus 234 Dnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~gA~~~~~pd~l~ri~~~~~~~~~~~~~~~~~s~a 313 (447)
|+..|+++++.+|.+... .+..+.++|++.||+|+.|++..... .++++++
T Consensus 115 D~k~gva~~l~~l~~~~~-------~~~~i~~l~t~dEE~G~~ga~~l~~~----------------------~~~~~~~ 165 (485)
T PRK15026 115 DNGIGMASALAVLADENV-------VHGPLEVLLTMTEEAGMDGAFGLQSN----------------------WLQADIL 165 (485)
T ss_pred ccHHHHHHHHHHHHhCCC-------CCCCEEEEEEcccccCcHhHHHhhhc----------------------cCCcCEE
Confidence 999999999998754321 13457789999999999888764221 1456799
Q ss_pred EEEecC
Q 013257 314 VSADMA 319 (447)
Q Consensus 314 Is~Dv~ 319 (447)
|.+|-+
T Consensus 166 i~~e~~ 171 (485)
T PRK15026 166 INTDSE 171 (485)
T ss_pred EEeCCC
Confidence 999976
No 50
>PRK08737 acetylornithine deacetylase; Provisional
Probab=93.05 E-value=0.15 Score=52.61 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechh-hhccchHHhhcCHHHHHHHHHHHHHHHH
Q 013257 356 AVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAP-QLSMHSIREMCAVDDVKHSYEHFKAFFQ 434 (447)
Q Consensus 356 ~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP-~ryMHS~~E~~~~~Di~~~~~ll~~f~~ 434 (447)
+.....++.++++.++|.-... +++|++.+. ...||||+..|.= ...+|++.|-++++++..+++++..++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~------~~~tDa~~~-~~~Gip~v~~GpG~~~~aHt~dE~i~i~~l~~~~~~~~~~~~ 362 (364)
T PRK08737 290 EERRLAARDVADALDLPIGNAV------DFWTEASLF-SAAGYTALVYGPGDIAQAHTADEFVTLDQLQRYAESVHRIIN 362 (364)
T ss_pred hHHHHHHHHHHhhhcCCCCcee------ccccCHHHH-HHcCCCEEEECCCChhhccCCCcceeHHHHHHHHHHHHHHhc
Confidence 4444556777777777753221 457777665 4579999999876 4579999999999999999999999875
No 51
>PRK07318 dipeptidase PepV; Reviewed
Probab=92.91 E-value=0.11 Score=55.47 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHh-CCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhhh-ccchHHhhcCHHHHHHHHHHHHHH
Q 013257 355 NAVTSFVFREVASK-HNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQL-SMHSIREMCAVDDVKHSYEHFKAF 432 (447)
Q Consensus 355 ~~~~~~~l~~~a~~-~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~r-yMHS~~E~~~~~Di~~~~~ll~~f 432 (447)
+..+.+.+++.+++ .+.+.+.... +|+|++.+.. .|||.+.++.+.. .+|++.|-++++|+..+++++..+
T Consensus 388 d~~lv~~l~~a~~~~~g~~~~~~~~-----~ggtDa~~~~--~~i~~Gp~~pg~~~~aH~~dE~v~i~~l~~~~~v~~~~ 460 (466)
T PRK07318 388 DDPLVKTLLKVYEKQTGLKGEEQVI-----GGGTYARLLK--RGVAFGAMFPGSEDTMHQANEYIEIDDLIKAAAIYAEA 460 (466)
T ss_pred CCHHHHHHHHHHHHHhCCCCCeeEE-----cchHhHhhCC--CeEEeCCCCCCCCCCCcCCCcceeHHHHHHHHHHHHHH
Confidence 56788888888886 7888775432 4677766543 3777665555433 399999999999999999999999
Q ss_pred HHHhh
Q 013257 433 FQEFS 437 (447)
Q Consensus 433 ~~~~~ 437 (447)
+.++.
T Consensus 461 l~~~~ 465 (466)
T PRK07318 461 IYELA 465 (466)
T ss_pred HHHHh
Confidence 88763
No 52
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=92.51 E-value=0.24 Score=54.67 Aligned_cols=79 Identities=13% Similarity=0.118 Sum_probs=59.3
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechh--hhccchHHhhcCHHHHHHHHHHHHH
Q 013257 354 TNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAP--QLSMHSIREMCAVDDVKHSYEHFKA 431 (447)
Q Consensus 354 t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP--~ryMHS~~E~~~~~Di~~~~~ll~~ 431 (447)
.|+.+...+++.|++.|++++... .+|+|++.+. ++.|.+++..+.+ --..|++.|.++.+|+...++++..
T Consensus 510 ~d~~lv~~~~~a~~~~G~~~~~~~-----sgag~Da~~~-a~~~p~amif~~~g~~g~sHsp~E~v~~edL~~g~~vl~~ 583 (591)
T PRK13799 510 CAPELMKQLEAATDAAGVPLFELA-----SGAGHDAMKI-AEIMDQAMLFTRCGNAGISHNPLESMTADDMELSADAFLD 583 (591)
T ss_pred CCHHHHHHHHHHHHHcCCCceecC-----cchHHHHHHH-HhhCCEEEEEEecCCCCCCCCccccCCHHHHHHHHHHHHH
Confidence 478899999999999999876432 2567776654 3446555444332 2347999999999999999999999
Q ss_pred HHHHhhh
Q 013257 432 FFQEFSE 438 (447)
Q Consensus 432 f~~~~~~ 438 (447)
++..+.+
T Consensus 584 ~l~~l~~ 590 (591)
T PRK13799 584 FLNNFAE 590 (591)
T ss_pred HHHHHhh
Confidence 9988764
No 53
>PRK06446 hypothetical protein; Provisional
Probab=92.09 E-value=0.23 Score=52.42 Aligned_cols=80 Identities=19% Similarity=0.225 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHhC-CCCEEEEEeecCCCCCCChHHHHhcCCCCcEEE--ech--hhhccchHHhhcCHHHHHHHHHHH
Q 013257 355 NAVTSFVFREVASKH-NLPVQDFVVRNDMACGSTIGPILASGVGIRTVD--VGA--PQLSMHSIREMCAVDDVKHSYEHF 429 (447)
Q Consensus 355 ~~~~~~~l~~~a~~~-~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~d--igi--P~ryMHS~~E~~~~~Di~~~~~ll 429 (447)
+..+.+.+.+.+++. +.+-+.... .+|+|++.......|+|++. +|+ |-..+|++.|-+++++++.+++++
T Consensus 351 ~~~~v~~l~~a~~~~~g~~~~~~~~----~~g~~d~~~~~~~~gip~v~~~~g~g~~~~~~H~~dE~i~i~~l~~~~~~~ 426 (436)
T PRK06446 351 NSKVVKAMIESAKRVYGTEPVVIPN----SAGTQPMGLFVYKLGIRDIVSAIGVGGYYSNAHAPNENIRIDDYYKAIKHT 426 (436)
T ss_pred CCHHHHHHHHHHHHHhCCCCceecC----CCCcchHHHHHHHhCCCcceeecccCCCCcCCcCCCCCcCHHHHHHHHHHH
Confidence 445666666666553 555454321 23555544433557999875 433 467899999999999999999999
Q ss_pred HHHHHHhhh
Q 013257 430 KAFFQEFSE 438 (447)
Q Consensus 430 ~~f~~~~~~ 438 (447)
..|++.+..
T Consensus 427 ~~~~~~~~~ 435 (436)
T PRK06446 427 EEFLKLYST 435 (436)
T ss_pred HHHHHHhcC
Confidence 999987643
No 54
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=92.00 E-value=0.21 Score=51.87 Aligned_cols=77 Identities=14% Similarity=0.053 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHh-CCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhhh-ccchHHhhcCHHHHHHHHHHHHHH
Q 013257 355 NAVTSFVFREVASK-HNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQL-SMHSIREMCAVDDVKHSYEHFKAF 432 (447)
Q Consensus 355 ~~~~~~~l~~~a~~-~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~r-yMHS~~E~~~~~Di~~~~~ll~~f 432 (447)
+..+.+.+.+.+++ .+.+..... ..++|.+....++.|+|++..|.-.. .+|++.|-++++|+..+++++.++
T Consensus 315 ~~~~~~~l~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~g~p~v~~Gpg~~~~aH~~dE~i~i~~l~~~~~~~~~~ 389 (395)
T TIGR03526 315 DHLITKAALETYKRLFGKEPGVDK-----WTFSTNGVSIMGRHGIPVIGFGPGDEDQAHAPNEKTWKEDLVKAAAMYAAI 389 (395)
T ss_pred CCHHHHHHHHHHHHHhCCCCceee-----eeeecccceehhhcCCCEEEECCcchhhccCCCceEEHHHHHHHHHHHHHH
Confidence 44566666666665 344433322 13445443333568999999996643 589999999999999999999999
Q ss_pred HHHh
Q 013257 433 FQEF 436 (447)
Q Consensus 433 ~~~~ 436 (447)
+..+
T Consensus 390 ~~~~ 393 (395)
T TIGR03526 390 PTVY 393 (395)
T ss_pred HHHh
Confidence 8765
No 55
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=91.91 E-value=0.19 Score=52.16 Aligned_cols=78 Identities=14% Similarity=0.044 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHh-CCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhhh-ccchHHhhcCHHHHHHHHHHHHHH
Q 013257 355 NAVTSFVFREVASK-HNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQL-SMHSIREMCAVDDVKHSYEHFKAF 432 (447)
Q Consensus 355 ~~~~~~~l~~~a~~-~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~r-yMHS~~E~~~~~Di~~~~~ll~~f 432 (447)
+..+.+.+.+++++ .+-+-.... ..++|.+....++.|+|++..|.-.. .+|++.|-++++|+..+++++..+
T Consensus 315 ~~~~v~~l~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~g~p~v~~Gpg~~~~aH~~nE~v~i~~l~~~~~~~~~~ 389 (395)
T TIGR03320 315 DHLITKAALETYKRLFGKEPGVDK-----WTFSTNGVSIMGRHGIPVIGFGPGDEDQAHAPNEKTWKEDLVRAAAMYAAI 389 (395)
T ss_pred CCHHHHHHHHHHHHHhCCCCceee-----cceecccceehhhcCCCEEEECCCchhhccCCCcEEEHHHHHHHHHHHHHH
Confidence 44566666666665 355433322 13555443333568999999996544 489999999999999999999999
Q ss_pred HHHhh
Q 013257 433 FQEFS 437 (447)
Q Consensus 433 ~~~~~ 437 (447)
+..|-
T Consensus 390 ~~~~~ 394 (395)
T TIGR03320 390 PTVYL 394 (395)
T ss_pred HHHhh
Confidence 88763
No 56
>PRK07906 hypothetical protein; Provisional
Probab=91.79 E-value=0.38 Score=50.39 Aligned_cols=77 Identities=16% Similarity=0.221 Sum_probs=56.0
Q ss_pred cCHHHHHHHHHHHHhCC--CCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechh--------hhccchHHhhcCHHHHH
Q 013257 354 TNAVTSFVFREVASKHN--LPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAP--------QLSMHSIREMCAVDDVK 423 (447)
Q Consensus 354 t~~~~~~~l~~~a~~~~--Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP--------~ryMHS~~E~~~~~Di~ 423 (447)
.+..+.+.+++.+++.. ...-... .+|+|++.+. ...|+|++..|-- ...+|++.|-++++|+.
T Consensus 340 ~~~~~v~~l~~a~~~~~~~~~~~~~~-----~~ggtDa~~~-~~~g~p~~~~gp~~~~~~~~~~~~~H~~~E~v~~~~l~ 413 (426)
T PRK07906 340 FDGPLVDAMNAALLAEDPGARVVPYM-----LSGGTDAKAF-SRLGIRCYGFAPLRLPPDLDFAALFHGVDERVPVDALR 413 (426)
T ss_pred CCcHHHHHHHHHHHHHCCCCeEeeee-----ecccCcHHHH-HhcCCceEEEeccccCccccccccCcCCCCceeHHHHH
Confidence 35678888888888753 2211112 2467776665 4679999987632 25699999999999999
Q ss_pred HHHHHHHHHHHHh
Q 013257 424 HSYEHFKAFFQEF 436 (447)
Q Consensus 424 ~~~~ll~~f~~~~ 436 (447)
.+++++..++.++
T Consensus 414 ~~~~~~~~~l~~~ 426 (426)
T PRK07906 414 FGVRVLDRFLRTC 426 (426)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998764
No 57
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=91.31 E-value=0.41 Score=49.84 Aligned_cols=76 Identities=9% Similarity=0.001 Sum_probs=56.9
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhh-hccchHHhhcCHHHHHHHHHHHHHH
Q 013257 354 TNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQ-LSMHSIREMCAVDDVKHSYEHFKAF 432 (447)
Q Consensus 354 t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~-ryMHS~~E~~~~~Di~~~~~ll~~f 432 (447)
.|..+.+.+++.+++.+.+..... .+|+|++.+. ++.|+|++..|-.. ..+|++.|-++.+|+..+++++..+
T Consensus 324 ~d~~lv~~l~~a~~~~g~~~~~~~-----~~ggtDa~~~-~~~~~~~v~fgPg~~~~aH~~dE~v~~e~l~~~~~vl~~~ 397 (401)
T TIGR01879 324 CSEELVAALTELCERLGYNARVMV-----SGAGHDAQIL-APIVPIGMIFIPSINGISHNPAEWSNITDCAEGAKVLYLM 397 (401)
T ss_pred CCHHHHHHHHHHHHHcCCCccccc-----cchHHHHHHH-HhhCCEEEEEecCCCCCcCCCCccCCHHHHHHHHHHHHHH
Confidence 478899999999998888766432 2467766554 34577776554332 3579999999999999999999988
Q ss_pred HHH
Q 013257 433 FQE 435 (447)
Q Consensus 433 ~~~ 435 (447)
+..
T Consensus 398 i~~ 400 (401)
T TIGR01879 398 VYQ 400 (401)
T ss_pred HHh
Confidence 764
No 58
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=91.20 E-value=0.36 Score=53.29 Aligned_cols=79 Identities=10% Similarity=0.110 Sum_probs=58.3
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhhh---ccchHHhhcCHHHHHHHHHHH
Q 013257 353 ATNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQL---SMHSIREMCAVDDVKHSYEHF 429 (447)
Q Consensus 353 ~t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~r---yMHS~~E~~~~~Di~~~~~ll 429 (447)
..|+.+.+.+++.|++.|+++.... .+|||++.+.. ..+.+++ +=+|.. .+|++.|.++.+|+...++++
T Consensus 507 ~~d~~lv~~~~~aa~~~G~~~~~~~-----sggg~Da~~~a-~~~p~~m-ifgpg~~~g~sH~p~E~v~~edL~~g~~vl 579 (591)
T PRK13590 507 PSAPAWQQRWEAAVAALGLPLFRMP-----SGAGHDAMKLH-EIMPQAM-LFVRGENAGISHNPLESSTADDMQLAVQAF 579 (591)
T ss_pred CCCHHHHHHHHHHHHHcCCCcccCC-----cchhHHHHHHH-HHCCEEE-EEEeeCCCCCCCCCccCCCHHHHHHHHHHH
Confidence 3478899999999999998875322 25677765543 3344444 444543 379999999999999999999
Q ss_pred HHHHHHhhh
Q 013257 430 KAFFQEFSE 438 (447)
Q Consensus 430 ~~f~~~~~~ 438 (447)
..++..+..
T Consensus 580 ~~ll~~l~~ 588 (591)
T PRK13590 580 QHLLDQLAA 588 (591)
T ss_pred HHHHHHHhh
Confidence 999977753
No 59
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=91.06 E-value=0.3 Score=50.19 Aligned_cols=68 Identities=16% Similarity=0.257 Sum_probs=51.1
Q ss_pred cCHHHHHHHHHHHHh-CCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechh-hhccchHHhhcCHHHHHHHHH
Q 013257 354 TNAVTSFVFREVASK-HNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAP-QLSMHSIREMCAVDDVKHSYE 427 (447)
Q Consensus 354 t~~~~~~~l~~~a~~-~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP-~ryMHS~~E~~~~~Di~~~~~ 427 (447)
.+..+.+.+++.+++ .+.+..... .+|+|++.+. .+.|||++.+|.- .-.+|++.|-++++|+..+++
T Consensus 305 ~~~~~~~~~~~~~~~~~g~~~~~~~-----~~g~tD~~~~-~~~gip~v~~Gpg~~~~~H~~~E~v~~~~~~~~~~ 374 (375)
T TIGR01910 305 PDSRLVKALEAIIKKVRGIEPEVLV-----STGGTDARFL-RKAGIPSIVYGPGDLETAHQVNEYISIKNLVESTK 374 (375)
T ss_pred CCCHHHHHHHHHHHHHhCCCCeEee-----eccchhHHHH-HHcCCcEEEECCCCccccCCCCceeEHHHHHHHhh
Confidence 356688888888876 576654432 2477776665 4568999999975 467999999999999988765
No 60
>PRK07079 hypothetical protein; Provisional
Probab=90.80 E-value=0.55 Score=50.02 Aligned_cols=80 Identities=15% Similarity=0.084 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHh-CCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEec--hhhhccchHHhhcCHHHHHHHHHHHHH
Q 013257 355 NAVTSFVFREVASK-HNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVG--APQLSMHSIREMCAVDDVKHSYEHFKA 431 (447)
Q Consensus 355 ~~~~~~~l~~~a~~-~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~dig--iP~ryMHS~~E~~~~~Di~~~~~ll~~ 431 (447)
+..+.+.+.+.+++ .+.+.+.... .+|+|...+.....|||++..+ .|--.+|++.|-++++|+..+++++..
T Consensus 374 ~~~~v~~l~~a~~~~~g~~~~~~~~----~~g~~d~~~~~~~~giP~v~~g~~~~~~~~H~~dE~v~l~~l~~~~~~~~~ 449 (469)
T PRK07079 374 DDPWVRWALASIARTTGKKPALLPN----LGGSLPNDVFADILGLPTLWVPHSYPACSQHAPNEHLLASVAREGLQIMAG 449 (469)
T ss_pred CCHHHHHHHHHHHHHhCCCCceecC----CCcchhHHHHHHHhCCCEEEecCCCCCccCcCCCCCCCHHHHHHHHHHHHH
Confidence 34466666655554 4555454321 2355454443345799999653 343458999999999999999999999
Q ss_pred HHHHhhh
Q 013257 432 FFQEFSE 438 (447)
Q Consensus 432 f~~~~~~ 438 (447)
++..|.+
T Consensus 450 ~~~~~~~ 456 (469)
T PRK07079 450 LFWDLGE 456 (469)
T ss_pred HHHHHhc
Confidence 9988854
No 61
>PRK08652 acetylornithine deacetylase; Provisional
Probab=90.78 E-value=0.32 Score=49.11 Aligned_cols=50 Identities=18% Similarity=0.070 Sum_probs=37.5
Q ss_pred CceEeec-ccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCccccc
Q 013257 225 KEFIFSG-RLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQ 279 (447)
Q Consensus 225 ~~~i~~k-alDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~ 279 (447)
++++.|+ +.|++.++++++.|++.+... ..+..++++|+..||+|+.|+.
T Consensus 77 ~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~-----~~~~~v~~~~~~dEE~g~~G~~ 127 (347)
T PRK08652 77 GVYVYGTGACDAKGGVAAILLALEELGKE-----FEDLNVGIAFVSDEEEGGRGSA 127 (347)
T ss_pred CCEEEeccchhhhHHHHHHHHHHHHHhhc-----ccCCCEEEEEecCcccCChhHH
Confidence 3456665 789999999999998877531 1234678899999999987654
No 62
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=90.69 E-value=0.36 Score=50.49 Aligned_cols=77 Identities=13% Similarity=0.094 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhh--hccchHHhhcCHHHHHHHHHHHHHHH
Q 013257 356 AVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQ--LSMHSIREMCAVDDVKHSYEHFKAFF 433 (447)
Q Consensus 356 ~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~--ryMHS~~E~~~~~Di~~~~~ll~~f~ 433 (447)
..+.+.+++.+++.++++-.... ..+|+|++.+. ...|+|++.+|... ..+|++.|-++++|+...++++..++
T Consensus 328 ~~l~~~~~~~~~~~~~~~~~~~~---~~~g~tDa~~~-~~~gip~v~~g~G~~~~~aH~~nE~i~i~~~~~~~~~~~~~~ 403 (410)
T PRK06133 328 RALAEHAQGIYGELGRRLEPIDM---GTGGGTDAAFA-AGSGKAAVLEGFGLVGFGAHSNDEYIELNSIVPRLYLLTRMI 403 (410)
T ss_pred HHHHHHHHHHHHHcCCCcccccc---CCCCCchHHHH-HhcCCCceEecccCCCCCCCCCCcEEEcccHHHHHHHHHHHH
Confidence 45777788888887776432111 12466754443 34599999865433 55999999999999999999999988
Q ss_pred HHh
Q 013257 434 QEF 436 (447)
Q Consensus 434 ~~~ 436 (447)
.++
T Consensus 404 ~~~ 406 (410)
T PRK06133 404 MEL 406 (410)
T ss_pred HHh
Confidence 765
No 63
>PRK07205 hypothetical protein; Provisional
Probab=90.55 E-value=0.3 Score=51.62 Aligned_cols=53 Identities=15% Similarity=-0.019 Sum_probs=39.8
Q ss_pred CCceEeecc-cchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCccccc
Q 013257 224 KKEFIFSGR-LDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQ 279 (447)
Q Consensus 224 ~~~~i~~ka-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~ 279 (447)
.++++.|++ .|++.++++++.|++.+.+.. ...+..+.++++..||+|+.|+.
T Consensus 105 ~dg~lyGRGa~DmKgglaa~l~Al~~l~~~~---~~~~~~i~l~~~~dEE~g~~g~~ 158 (444)
T PRK07205 105 KDGCLFGRGTQDDKGPSMAALYAVKALLDAG---VQFNKRIRFIFGTDEETLWRCMN 158 (444)
T ss_pred ECCEEEECCcccCcHHHHHHHHHHHHHHHcC---CCCCCcEEEEEECCcccCcccHH
Confidence 456888876 999999999999988765311 11244678999999999987643
No 64
>PRK13381 peptidase T; Provisional
Probab=90.19 E-value=0.48 Score=49.33 Aligned_cols=52 Identities=31% Similarity=0.343 Sum_probs=37.8
Q ss_pred ceEeecc-----cchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCccccccc
Q 013257 226 EFIFSGR-----LDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQGA 281 (447)
Q Consensus 226 ~~i~~ka-----lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~gA 281 (447)
+.++|++ -|+..|+++++.|+..+.... .....++++|+..||+|+.|+...
T Consensus 125 ~~~~GrG~~~~g~DmKgg~aa~l~a~~~l~~~~----~~~g~i~~~~~~dEE~g~~G~~~~ 181 (404)
T PRK13381 125 DIIFSDGTSVLGADNKAAIAVVMTLLENLTENE----VEHGDIVVAFVPDEEIGLRGAKAL 181 (404)
T ss_pred cEEeCCCccccccccHHHHHHHHHHHHHHHhcC----CCCCCEEEEEEcccccccccHHHH
Confidence 3566654 799999999999887764311 124468899999999998766643
No 65
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=90.11 E-value=0.47 Score=49.84 Aligned_cols=73 Identities=18% Similarity=0.107 Sum_probs=55.6
Q ss_pred ecccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcccccccCCcchhhHHHHHhhccCCChHHHHHhhh
Q 013257 230 SGRLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQGAGSPAMLDALSRITNSFCSNSKLIEKAIQ 309 (447)
Q Consensus 230 ~kalDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~gA~~~~~pd~l~ri~~~~~~~~~~~~~~~~ 309 (447)
-.+.||-.|+.+++|..+.++.. .++..+.++++..||.|++|+.-.+.....+..+.+
T Consensus 224 ~GA~DNasGva~llEiAr~l~~~-----~p~~~v~f~~~~aEE~Gl~GS~~~~~~~~~~~~~~~---------------- 282 (435)
T COG2234 224 PGADDNASGVAALLELARVLKGN-----PPKRTVRFVAFGAEESGLLGSEAYVKRLSKDLDKKI---------------- 282 (435)
T ss_pred CCcccccHHHHHHHHHHHHHhcC-----CCCceEEEEEecchhhcccccHHHHhcCCcchhhhh----------------
Confidence 48999999999999998888742 145668899999999999999988777654422222
Q ss_pred cceEEEEecCCCCCC
Q 013257 310 RSFLVSADMAHALHP 324 (447)
Q Consensus 310 ~s~aIs~Dv~ha~~P 324 (447)
...|-.|+....+|
T Consensus 283 -~~viN~Dm~g~~~~ 296 (435)
T COG2234 283 -ALVINLDMLGSPNP 296 (435)
T ss_pred -heEEecccccCCCC
Confidence 24788898887654
No 66
>PRK07522 acetylornithine deacetylase; Provisional
Probab=90.11 E-value=0.52 Score=48.39 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEech-hhhccchHHhhcCHHHHHHHHHHHHHHHH
Q 013257 356 AVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGA-PQLSMHSIREMCAVDDVKHSYEHFKAFFQ 434 (447)
Q Consensus 356 ~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digi-P~ryMHS~~E~~~~~Di~~~~~ll~~f~~ 434 (447)
..+.+.+++++.+.. .... .++|++.+. ...|+|++.+|. +.-.+|++.|-+.+.|+..+++++..++.
T Consensus 312 ~~~v~~~~~~~~~~~---~~~~------~~~td~~~~-~~~gip~v~~Gpg~~~~~H~~~E~i~i~~l~~~~~~~~~~~~ 381 (385)
T PRK07522 312 AAAARLVRALTGDND---LRKV------AYGTEAGLF-QRAGIPTVVCGPGSIEQAHKPDEFVELAQLAACEAFLRRLLA 381 (385)
T ss_pred cHHHHHHHHHhCCCC---cceE------eeecchHHh-ccCCCCEEEECCCChhhCCCCCccccHHHHHHHHHHHHHHHH
Confidence 456667776655432 1111 256665554 368999999996 35589999999999999999999999987
Q ss_pred Hh
Q 013257 435 EF 436 (447)
Q Consensus 435 ~~ 436 (447)
.+
T Consensus 382 ~~ 383 (385)
T PRK07522 382 SL 383 (385)
T ss_pred HH
Confidence 65
No 67
>PRK06915 acetylornithine deacetylase; Validated
Probab=90.08 E-value=0.4 Score=50.12 Aligned_cols=53 Identities=17% Similarity=0.018 Sum_probs=38.5
Q ss_pred CCceEeeccc-chhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCccccc
Q 013257 224 KKEFIFSGRL-DNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQ 279 (447)
Q Consensus 224 ~~~~i~~kal-Dnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~ 279 (447)
.++.+.|++- |++.|+++++.|++.+.... ......+.++++..||+|+.|+.
T Consensus 123 ~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~---~~~~~~v~~~~~~dEE~g~~G~~ 176 (422)
T PRK06915 123 IGGRIYGRGTTDMKGGNVALLLAMEALIESG---IELKGDVIFQSVIEEESGGAGTL 176 (422)
T ss_pred ECCEEEecCcccchHHHHHHHHHHHHHHHcC---CCCCCcEEEEEecccccCCcchH
Confidence 3567888887 99999999988877664311 11245578899999999987654
No 68
>PRK09104 hypothetical protein; Validated
Probab=89.86 E-value=0.64 Score=49.42 Aligned_cols=78 Identities=14% Similarity=0.136 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHh-CCCCEEEEEeecCCCCCCC-hHHHHhcCCCCcEEEechhh--hccchHHhhcCHHHHHHHHHHHH
Q 013257 355 NAVTSFVFREVASK-HNLPVQDFVVRNDMACGST-IGPILASGVGIRTVDVGAPQ--LSMHSIREMCAVDDVKHSYEHFK 430 (447)
Q Consensus 355 ~~~~~~~l~~~a~~-~~Ip~Q~~~~r~d~~~G~T-~g~i~~a~~Gi~t~digiP~--ryMHS~~E~~~~~Di~~~~~ll~ 430 (447)
+..+...+.+.+++ .+.+..... .+|++ +........|+|++.+|... -.+|++.|-++++|+..+++++.
T Consensus 381 ~~~~v~~l~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~gip~v~~g~G~~~~~aH~~nE~i~i~~l~~~~~~~~ 455 (464)
T PRK09104 381 DSPALAAAKAALSDEWGKPAVLIG-----SGGSIPIVGDFKRILGMDSLLVGFGLDDDRIHSPNEKYDLESFHKGIRSWA 455 (464)
T ss_pred CCHHHHHHHHHHHHHhCCCceecC-----CCCcHHHHHHHHHHhCCCEEEecCCCCCCCCcCCCCCcCHHHHHHHHHHHH
Confidence 44566666666654 566554321 23443 23333344689999888742 36999999999999999999999
Q ss_pred HHHHHhh
Q 013257 431 AFFQEFS 437 (447)
Q Consensus 431 ~f~~~~~ 437 (447)
.++..+.
T Consensus 456 ~ll~~~~ 462 (464)
T PRK09104 456 RILAALA 462 (464)
T ss_pred HHHHHhh
Confidence 9998763
No 69
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=89.81 E-value=0.71 Score=48.20 Aligned_cols=76 Identities=11% Similarity=0.090 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHh-CCCCEEEEEeecCCCCCCChHHHHhcCCC-C-cEEEechhh-hccchHHhhcCHHHHHHHHHHHHHH
Q 013257 357 VTSFVFREVASK-HNLPVQDFVVRNDMACGSTIGPILASGVG-I-RTVDVGAPQ-LSMHSIREMCAVDDVKHSYEHFKAF 432 (447)
Q Consensus 357 ~~~~~l~~~a~~-~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~G-i-~t~digiP~-ryMHS~~E~~~~~Di~~~~~ll~~f 432 (447)
.+.+.+.+.+++ .+.+.-... .+|+|++.+. ++.| + |++..|.-. -.+|++.|-++++|+..+++++..+
T Consensus 344 ~lv~~l~~a~~~~~g~~~~~~~-----~~g~~D~~~~-~~~g~~~~~v~fGPg~~~~aH~~nE~v~i~~l~~~~~~l~~~ 417 (427)
T PRK13013 344 PVVRSVAAAIERVLGRQADYVV-----SPGTYDQKHI-DRIGKLKNCIAYGPGILDLAHQPDEWVGIADMVDSAKVMALV 417 (427)
T ss_pred HHHHHHHHHHHHhhCCCCceee-----cCccCCHHHH-HhcCCCCCEEEECCCCccccCCCCceeEHHHHHHHHHHHHHH
Confidence 567777777766 677654332 2466666555 3445 4 688888422 3589999999999999999999999
Q ss_pred HHHhhh
Q 013257 433 FQEFSE 438 (447)
Q Consensus 433 ~~~~~~ 438 (447)
+..|..
T Consensus 418 l~~~~~ 423 (427)
T PRK13013 418 LADLLA 423 (427)
T ss_pred HHHHhc
Confidence 987754
No 70
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=89.66 E-value=0.87 Score=47.38 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHh-CCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhh-hccchHHhhcCHHHHHHHHHHHHHH
Q 013257 355 NAVTSFVFREVASK-HNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQ-LSMHSIREMCAVDDVKHSYEHFKAF 432 (447)
Q Consensus 355 ~~~~~~~l~~~a~~-~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~-ryMHS~~E~~~~~Di~~~~~ll~~f 432 (447)
+..+.+.+.+.+++ .|.+ -... .+|+|......++.|+|++..|... --+|++.|-+.++|+..+++++..+
T Consensus 329 ~~~~v~~l~~~~~~~~g~~-~~~~-----~~G~~~da~~~~~~~~~~~~fgp~~~~~~H~~~E~v~i~~l~~~~~~~~~~ 402 (409)
T COG0624 329 DSPLVAALAEAAEELLGLP-PEVS-----TGGGTHDARFFARLGIPAVIFGPGDIGLAHQPNEYVELEDLVKGAKVLARL 402 (409)
T ss_pred chHHHHHHHHHHHHhhCCC-ceec-----CCCCcchHHHHHhcCCeeEEECCCCcccccCCCceeeHHHHHHHHHHHHHH
Confidence 45666666666666 5777 3322 2345544444477779977777766 6999999999999999999999999
Q ss_pred HHHhhh
Q 013257 433 FQEFSE 438 (447)
Q Consensus 433 ~~~~~~ 438 (447)
+..+..
T Consensus 403 l~~l~~ 408 (409)
T COG0624 403 LYELAE 408 (409)
T ss_pred HHHHhc
Confidence 988753
No 71
>PRK08201 hypothetical protein; Provisional
Probab=89.17 E-value=0.97 Score=47.89 Aligned_cols=78 Identities=13% Similarity=0.172 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHh-CCCCEEEEEeecCCCCCCCh--HHHHhcCCCCcEEEech--hhhccchHHhhcCHHHHHHHHHHH
Q 013257 355 NAVTSFVFREVASK-HNLPVQDFVVRNDMACGSTI--GPILASGVGIRTVDVGA--PQLSMHSIREMCAVDDVKHSYEHF 429 (447)
Q Consensus 355 ~~~~~~~l~~~a~~-~~Ip~Q~~~~r~d~~~G~T~--g~i~~a~~Gi~t~digi--P~ryMHS~~E~~~~~Di~~~~~ll 429 (447)
+..+.+.+.+.+++ .+.+.... ..|+|+ ........|+|++.+|. +-..+|++.|-++++|+..+++++
T Consensus 373 ~~~~~~~l~~a~~~~~g~~~~~~------~~gg~~~~~~~~~~~~gip~v~~GpG~~~~~~H~~nE~v~i~~l~~~~~~l 446 (456)
T PRK08201 373 DHPAIQAAARAYEAVYGTEAAFT------RMGGSIPVVETFSSQLHIPIVLMGFGLPSENFHAPNEHFHLENFDKGLRTL 446 (456)
T ss_pred CCHHHHHHHHHHHHHhCCCceec------CCCCcHHHHHHHHHHhCCCEEEecCCCCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 34566666666664 46554322 134553 12333557999998864 345789999999999999999999
Q ss_pred HHHHHHhhh
Q 013257 430 KAFFQEFSE 438 (447)
Q Consensus 430 ~~f~~~~~~ 438 (447)
..|+..+.+
T Consensus 447 ~~~~~~~~~ 455 (456)
T PRK08201 447 VEYWHQLAE 455 (456)
T ss_pred HHHHHHhhc
Confidence 999988753
No 72
>PRK07318 dipeptidase PepV; Reviewed
Probab=88.93 E-value=0.41 Score=50.95 Aligned_cols=53 Identities=15% Similarity=-0.017 Sum_probs=39.1
Q ss_pred CCceEeecc-cchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCccccc
Q 013257 224 KKEFIFSGR-LDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQ 279 (447)
Q Consensus 224 ~~~~i~~ka-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~ 279 (447)
.++++.|++ .|++.|+++++.|++.++... ......+.+++++.||+|+.|+.
T Consensus 107 ~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~g---~~~~~~i~l~~~~DEE~g~~G~~ 160 (466)
T PRK07318 107 KDGKIYARGTSDDKGPTMAAYYALKIIKELG---LPLSKKVRFIVGTDEESGWKCMD 160 (466)
T ss_pred ECCEEEEcccccCcHHHHHHHHHHHHHHHcC---CCCCccEEEEEEcccccCchhHH
Confidence 356787776 899999999998887765311 01234578899999999987664
No 73
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=88.76 E-value=0.42 Score=49.11 Aligned_cols=55 Identities=16% Similarity=0.023 Sum_probs=40.4
Q ss_pred CCceEeecc-cchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCccccccc
Q 013257 224 KKEFIFSGR-LDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQGA 281 (447)
Q Consensus 224 ~~~~i~~ka-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~gA 281 (447)
.++++.|++ .||+.++++++.+++.+...+ ...+..++++|+..||+|+.|+...
T Consensus 94 ~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~---~~~~~~i~~~~~~~EE~g~~G~~~~ 149 (375)
T TIGR01910 94 KDGKLYGRGATDMKGGLVALLYALKAIREAG---IKPNGNIILQSVVDEESGEAGTLYL 149 (375)
T ss_pred ECCEEEecCccccchHHHHHHHHHHHHHHcC---CCCCccEEEEEEcCcccCchhHHHH
Confidence 356788775 699999999999887765311 0124568899999999998777643
No 74
>PRK08201 hypothetical protein; Provisional
Probab=88.26 E-value=0.57 Score=49.62 Aligned_cols=52 Identities=19% Similarity=0.139 Sum_probs=37.2
Q ss_pred CCceEeecc-cchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcccc
Q 013257 224 KKEFIFSGR-LDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSA 278 (447)
Q Consensus 224 ~~~~i~~ka-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga 278 (447)
.+++|.|++ -|++.++++++.+++.+.+.. ......+.+++++.||+|+.|.
T Consensus 109 ~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~---~~~~~~i~~~~~~dEE~g~~g~ 161 (456)
T PRK08201 109 RDGKLYARGASDDKGQVFMHLKAVEALLKVE---GTLPVNVKFCIEGEEEIGSPNL 161 (456)
T ss_pred ECCEEEEEecccCcHHHHHHHHHHHHHHHhc---CCCCCCEEEEEEcccccCCccH
Confidence 456788876 899999999998887664210 0123457888999999988653
No 75
>PRK09104 hypothetical protein; Validated
Probab=88.10 E-value=0.65 Score=49.38 Aligned_cols=50 Identities=18% Similarity=0.038 Sum_probs=35.5
Q ss_pred eEeecc-cchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCccccc
Q 013257 227 FIFSGR-LDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQ 279 (447)
Q Consensus 227 ~i~~ka-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~ 279 (447)
++.|++ .|++.++++++.|++.+.+.... ....+.++++..||+|+.|..
T Consensus 120 ~lyGRG~~D~Kg~laa~l~a~~~l~~~~~~---~~~~i~~~~~~dEE~g~~g~~ 170 (464)
T PRK09104 120 VIVARGASDDKGQLMTFVEACRAWKAVTGS---LPVRVTILFEGEEESGSPSLV 170 (464)
T ss_pred eEEEecccCCcHHHHHHHHHHHHHHHhcCC---CCCcEEEEEECccccCCccHH
Confidence 355554 89999999999988776531101 234578899999999986544
No 76
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=87.94 E-value=0.57 Score=48.09 Aligned_cols=54 Identities=19% Similarity=0.075 Sum_probs=39.1
Q ss_pred CCceEeeccc-chhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcccccc
Q 013257 224 KKEFIFSGRL-DNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQG 280 (447)
Q Consensus 224 ~~~~i~~kal-Dnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~g 280 (447)
.++++.|++- |++.|+++++.|++.+.... ......+.++|+..||+|+.|+..
T Consensus 89 ~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~---~~~~~~i~l~~~~dEE~g~~G~~~ 143 (377)
T PRK08588 89 KDGKLYGRGATDMKSGLAALVIAMIELKEQG---QLLNGTIRLLATAGEEVGELGAKQ 143 (377)
T ss_pred ECCEEEecCcccccchHHHHHHHHHHHHHcC---CCCCCcEEEEEEcccccCchhHHH
Confidence 4567888765 99999999988877654211 012456889999999998876654
No 77
>PRK06156 hypothetical protein; Provisional
Probab=87.54 E-value=0.66 Score=50.27 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=37.3
Q ss_pred CceEeecc-cchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcccccc
Q 013257 225 KEFIFSGR-LDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQG 280 (447)
Q Consensus 225 ~~~i~~ka-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~g 280 (447)
++++.|++ -|+..++++++.|+..+...+ . .+...+.++|++.||+|+.|+..
T Consensus 144 ~g~lyGRG~~D~Kgg~a~~l~a~~~l~~~~--~-~~~~~i~~~~~~dEE~g~~G~~~ 197 (520)
T PRK06156 144 GDRLYGRGTEDDKGAIVTALYAMKAIKDSG--L-PLARRIELLVYTTEETDGDPLKY 197 (520)
T ss_pred CCEEEEcCcccchHHHHHHHHHHHHHHHcC--C-CCCceEEEEEecccccCchhHHH
Confidence 45666654 799999999988876654211 1 12356788999999999987654
No 78
>PRK07907 hypothetical protein; Provisional
Probab=87.15 E-value=1.4 Score=46.70 Aligned_cols=78 Identities=10% Similarity=0.034 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHh-CCCCEEEEEeecCCCCCCCh--HHHHhcCCCCcEEEechh--hhccchHHhhcCHHHHHHHHHHH
Q 013257 355 NAVTSFVFREVASK-HNLPVQDFVVRNDMACGSTI--GPILASGVGIRTVDVGAP--QLSMHSIREMCAVDDVKHSYEHF 429 (447)
Q Consensus 355 ~~~~~~~l~~~a~~-~~Ip~Q~~~~r~d~~~G~T~--g~i~~a~~Gi~t~digiP--~ryMHS~~E~~~~~Di~~~~~ll 429 (447)
+..+.+.+.+.+++ .+.+..... .+|++. ..+.....++|++..|.- -..+|++.|-++++|+..+++++
T Consensus 365 ~~~~~~~l~~a~~~~~g~~~~~~~-----~~g~~~~~~~~~~~~~~~~~v~~Gpg~~~~~aH~~nE~i~i~~l~~~~~~~ 439 (449)
T PRK07907 365 SGPAYDAARAAMREAWGKDPVDMG-----MGGSIPFIAELQEAFPQAEILVTGVEDPKTRAHSPNESVHLGELERAAVAE 439 (449)
T ss_pred CCHHHHHHHHHHHHHhCCCceecC-----CCCcHHHHHHHHHhcCCCcEEEeccCCCCCCCcCCCCCcCHHHHHHHHHHH
Confidence 44566666655554 477654221 133321 223333446899988863 35789999999999999999999
Q ss_pred HHHHHHhh
Q 013257 430 KAFFQEFS 437 (447)
Q Consensus 430 ~~f~~~~~ 437 (447)
..++.+|.
T Consensus 440 ~~~l~~~~ 447 (449)
T PRK07907 440 ALLLARLA 447 (449)
T ss_pred HHHHHHHh
Confidence 99999885
No 79
>PRK07907 hypothetical protein; Provisional
Probab=86.74 E-value=1.1 Score=47.27 Aligned_cols=50 Identities=22% Similarity=0.086 Sum_probs=36.4
Q ss_pred CCceEeec-ccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCccccc
Q 013257 224 KKEFIFSG-RLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQ 279 (447)
Q Consensus 224 ~~~~i~~k-alDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~ 279 (447)
.+++|.|+ +.|++.++++++.|++.+.. . ....+.++++..||.|+.|..
T Consensus 113 ~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~---~---~~~~i~~~~~~dEE~g~~g~~ 163 (449)
T PRK07907 113 RDGRLYGRGAADDKGGIAMHLAALRALGG---D---LPVGVTVFVEGEEEMGSPSLE 163 (449)
T ss_pred ECCEEEECCccCCcHHHHHHHHHHHHhcc---C---CCCcEEEEEEcCcccCCccHH
Confidence 35577775 68999999999999887621 1 233467788999999986543
No 80
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=86.64 E-value=0.78 Score=46.96 Aligned_cols=54 Identities=13% Similarity=0.055 Sum_probs=38.9
Q ss_pred CCceEeeccc-chhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCc-ccccc
Q 013257 224 KKEFIFSGRL-DNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGS-DSAQG 280 (447)
Q Consensus 224 ~~~~i~~kal-Dnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGs-rga~g 280 (447)
.++++.|++- |++.++.+++.+++.+.+.. .+....+.++|+..||+|+ +|+..
T Consensus 85 ~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~---~~~~~~v~~~~~~dEE~~~~~G~~~ 140 (370)
T TIGR01246 85 RDGKLYGRGAADMKGSLAAFIVAAERFVKKN---PDHKGSISLLITSDEEGTAIDGTKK 140 (370)
T ss_pred ECCEEEecccccchHHHHHHHHHHHHHHHhc---CCCCCcEEEEEEeccccCCCcCHHH
Confidence 3568889887 99999999988887654311 1124568899999999875 45554
No 81
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=86.42 E-value=0.94 Score=46.02 Aligned_cols=47 Identities=17% Similarity=0.240 Sum_probs=37.6
Q ss_pred CCChHHHHhcCCCCcEEEechhh-hccchHHhhcCHHHHHHHHHHHHHH
Q 013257 385 GSTIGPILASGVGIRTVDVGAPQ-LSMHSIREMCAVDDVKHSYEHFKAF 432 (447)
Q Consensus 385 G~T~g~i~~a~~Gi~t~digiP~-ryMHS~~E~~~~~Di~~~~~ll~~f 432 (447)
++|++.+. ...|||++.+|.=. ..+|++.|-++++|+..+++++..+
T Consensus 316 ~~tD~~~~-~~~gip~v~~Gpg~~~~~H~~~E~i~i~~l~~~~~~~~~~ 363 (364)
T TIGR01892 316 YGTEAPQF-QELGAEAVVCGPGDIRQAHQPDEYVEIEDLVRCRAVLARL 363 (364)
T ss_pred ccccHHHH-HhCCCcEEEECCCChHhCCCCCceeeHHHHHHHHHHHHHh
Confidence 45666554 45799999988533 3589999999999999999998875
No 82
>PRK07473 carboxypeptidase; Provisional
Probab=86.33 E-value=0.83 Score=47.27 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=37.5
Q ss_pred CceEeecc-cchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCccccc
Q 013257 225 KEFIFSGR-LDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQ 279 (447)
Q Consensus 225 ~~~i~~ka-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~ 279 (447)
++++.|++ .|++.|+++++.|++.+.... . .....+.+++++.||+|+.|+.
T Consensus 102 ~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~--~-~~~~~v~~~~~~dEE~g~~g~~ 154 (376)
T PRK07473 102 GNKCYGPGILDMKGGNYLALEAIRQLARAG--I-TTPLPITVLFTPDEEVGTPSTR 154 (376)
T ss_pred CCEEEcCchhhchHHHHHHHHHHHHHHHcC--C-CCCCCEEEEEeCCcccCCccHH
Confidence 45677765 999999999999887664311 0 1123478899999999987654
No 83
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=86.10 E-value=0.86 Score=46.93 Aligned_cols=50 Identities=26% Similarity=0.070 Sum_probs=37.0
Q ss_pred CCceEeecc-cchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcc
Q 013257 224 KKEFIFSGR-LDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSD 276 (447)
Q Consensus 224 ~~~~i~~ka-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsr 276 (447)
.++++.|++ .|+..|+++++.+++.+.+.. ......+.++|+..||.|+.
T Consensus 106 ~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~---~~~~~~v~~~~~~dEE~g~~ 156 (400)
T PRK13983 106 KDGKIYGRGSEDNGQGIVSSLLALKALMDLG---IRPKYNLGLAFVSDEETGSK 156 (400)
T ss_pred eCCEEEecCccCccchHHHHHHHHHHHHHhC---CCCCCcEEEEEEeccccCCc
Confidence 356788876 999999999998877664311 01345688999999999875
No 84
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=85.89 E-value=0.8 Score=47.22 Aligned_cols=50 Identities=16% Similarity=0.048 Sum_probs=38.3
Q ss_pred CceEeecc-cchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcccccc
Q 013257 225 KEFIFSGR-LDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQG 280 (447)
Q Consensus 225 ~~~i~~ka-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~g 280 (447)
++++.|++ .|++.++++++.+++.+.+. .+..++++|+..||+|+.|+.-
T Consensus 104 ~~~~~grG~~D~k~~~~~~l~a~~~l~~~------~~~~v~~~~~~~EE~g~~G~~~ 154 (394)
T PRK08651 104 DGKVYGRGASDMKGGIAALLAAFERLDPA------GDGNIELAIVPDEETGGTGTGY 154 (394)
T ss_pred CCEEEecCccccchHHHHHHHHHHHHHhc------CCCCEEEEEecCccccchhHHH
Confidence 45666665 89999999999998877531 1456889999999999866653
No 85
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=84.81 E-value=0.98 Score=48.23 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=40.9
Q ss_pred CCCChHHHHhcCCCCcEEEechhh-hccchHHhhcCHHHHHHHHHHHHHHHHHhh
Q 013257 384 CGSTIGPILASGVGIRTVDVGAPQ-LSMHSIREMCAVDDVKHSYEHFKAFFQEFS 437 (447)
Q Consensus 384 ~G~T~g~i~~a~~Gi~t~digiP~-ryMHS~~E~~~~~Di~~~~~ll~~f~~~~~ 437 (447)
+|+|++.+.. .|||++.+|--- ..+|++.|-++++++..+++++..++..|-
T Consensus 413 ~ggTDa~~~~--~~i~~gv~gPG~~~~aH~~dE~V~i~el~~a~~iy~~~i~~l~ 465 (466)
T TIGR01886 413 GGGTYGRLLE--RGVAYGAMFEGGPDVMHQANEFMMLDDLILAAAIYAEAIYELA 465 (466)
T ss_pred cCccHHHhcc--cccccccccCCCCCCccCCCcceEHHHHHHHHHHHHHHHHHHh
Confidence 4667665543 378888766553 468999999999999999999999988763
No 86
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=84.55 E-value=2.3 Score=43.32 Aligned_cols=48 Identities=10% Similarity=-0.114 Sum_probs=36.4
Q ss_pred CceEeec-ccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcccc
Q 013257 225 KEFIFSG-RLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSA 278 (447)
Q Consensus 225 ~~~i~~k-alDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga 278 (447)
++++.|+ ..|++.++++++.|++.+ .. . .+..+.++++..||.|+.|.
T Consensus 81 ~g~iyGrG~~D~Kg~~aa~l~A~~~l-~~--~---~~~~i~~~~~~dEE~g~~~~ 129 (348)
T PRK04443 81 DGVLWGRGSVDAKGPLAAFAAAAARL-EA--L---VRARVSFVGAVEEEAPSSGG 129 (348)
T ss_pred CCeEEeecccccccHHHHHHHHHHHh-cc--c---CCCCEEEEEEcccccCChhH
Confidence 3456665 589999999999999877 21 1 24568899999999987643
No 87
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=84.38 E-value=1.7 Score=48.76 Aligned_cols=151 Identities=17% Similarity=0.087 Sum_probs=88.2
Q ss_pred eeccCCceEeecccchhhhHHHHHHHHHhc---cCCCCCCCCCCceEEEEEEeccccCcccccccCCcchhhHHHHHhhc
Q 013257 220 VAGIKKEFIFSGRLDNLCMSFCSLKALIDS---TSSEGDLEDEIGVRMVALFDHEEVGSDSAQGAGSPAMLDALSRITNS 296 (447)
Q Consensus 220 ~~Gl~~~~i~~kalDnr~g~~~~leal~~~---~~~~~~~~~~~~~~~~~~t~qEEVGsrga~gA~~~~~pd~l~ri~~~ 296 (447)
++|-..+-+.-.+.|.-.|++.+++..+.. .+.. + .+..+++|+.++.||.|+.|++--+...
T Consensus 356 iigahrDSw~~Ga~dp~sGta~Ll~i~~~~~~~~k~g--w-rP~RtI~F~sWdAeEfGliGStE~~E~~----------- 421 (702)
T KOG2195|consen 356 IIGAHRDSWTFGAIDPNSGTALLLEIARALSKLKKRG--W-RPRRTILFASWDAEEFGLLGSTEWAEEY----------- 421 (702)
T ss_pred EEeccccccccCCcCCCccHHHHHHHHHHHHHHHHcC--C-CccceEEEEEccchhccccccHHHHHHH-----------
Confidence 334444445445999999998887654443 2211 1 1345789999999999999887433222
Q ss_pred cCCChHHHHHhhhcceEEEEecCCCCCCCCCCCCCCCCCCccCCccEEEEcCCCccccCHHHHHHHHHHHHhCCCCEEEE
Q 013257 297 FCSNSKLIEKAIQRSFLVSADMAHALHPNYMDKHEDNHQPKLHGGLVIKHNANQRYATNAVTSFVFREVASKHNLPVQDF 376 (447)
Q Consensus 297 ~~~~~~~~~~~~~~s~aIs~Dv~ha~~P~~~~~~~~~~~~~LG~Gp~ik~~~~~~~~t~~~~~~~l~~~a~~~~Ip~Q~~ 376 (447)
...+..-...-+|+..+.-|| .+. +..++|.+...++++++...=|.-..
T Consensus 422 --------~~~L~~~av~yin~d~~~~~~--------------~~l--------~~~~~PlL~~li~~~~k~~~~p~~~~ 471 (702)
T KOG2195|consen 422 --------LKNLKSRAVVYINVDNAVLGD--------------YTL--------HVKTTPLLTDLIEEAAKSVLSPDKGD 471 (702)
T ss_pred --------HHHhhheeEEEEeccccccCC--------------cee--------EEecCccHHHHHHHHHhccCCCCccc
Confidence 222333344444444433221 121 22357889999999998865554432
Q ss_pred E---eecCCCCCCChHHHHhcCCCCcEEEechhh--hccchHHhh
Q 013257 377 V---VRNDMACGSTIGPILASGVGIRTVDVGAPQ--LSMHSIREM 416 (447)
Q Consensus 377 ~---~r~d~~~G~T~g~i~~a~~Gi~t~digiP~--ryMHS~~E~ 416 (447)
. ... .+|+|+-.-.....|||++++.--- =+-||..++
T Consensus 472 ~~~~v~~--~g~~Sd~~~F~~~~GIpsv~~~f~~~yP~yhs~~dt 514 (702)
T KOG2195|consen 472 QSNRVLS--LGGGSDYASFLQFAGIPSVDFAFNRTYPFYHSTYDT 514 (702)
T ss_pred cceeEec--cCCCCcchhhccccCcceeeeeecCCcceeecccCc
Confidence 2 221 3566653333478999999876533 335666555
No 88
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=84.27 E-value=1.4 Score=44.52 Aligned_cols=49 Identities=20% Similarity=0.260 Sum_probs=40.2
Q ss_pred CCCChHHHHhcCCCCcEEEechhhh-ccchHHhhcCHHHHHHHHHHHHHHH
Q 013257 384 CGSTIGPILASGVGIRTVDVGAPQL-SMHSIREMCAVDDVKHSYEHFKAFF 433 (447)
Q Consensus 384 ~G~T~g~i~~a~~Gi~t~digiP~r-yMHS~~E~~~~~Di~~~~~ll~~f~ 433 (447)
.|+|++.+. +..|+|++.+|.-.. .+|++.|-+++.|+..+++++..|+
T Consensus 302 ~g~td~~~~-~~~Gip~v~~Gpg~~~~~H~~~E~v~i~~l~~~~~~~~~~~ 351 (352)
T PRK13007 302 YGWTDVARF-SALGIPAVNFGPGDPALAHQRDEHVPVAQITACARILRRWL 351 (352)
T ss_pred cccchHHHH-HhCCCCEEEeCCCchhhccCCCCceEHHHHHHHHHHHHHHh
Confidence 466766554 467999999995333 6999999999999999999999886
No 89
>PRK08554 peptidase; Reviewed
Probab=84.25 E-value=1.3 Score=46.94 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=36.1
Q ss_pred CceEeec-ccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcccc
Q 013257 225 KEFIFSG-RLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSA 278 (447)
Q Consensus 225 ~~~i~~k-alDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga 278 (447)
++++.|+ +.|+..|+++++.|++.+.+. . .+..+.++++..||+|+.+.
T Consensus 93 ~g~lyGrG~~DmKgg~aa~l~A~~~l~~~--~---~~~~i~l~~~~dEE~g~~~~ 142 (438)
T PRK08554 93 GDKAYGRGSADDKGNVASVMLALKELSKE--P---LNGKVIFAFTGDEEIGGAMA 142 (438)
T ss_pred CCEEEECCcccchHHHHHHHHHHHHHHhc--C---CCCCEEEEEEcccccCcccc
Confidence 4577775 499999999999888876431 1 23457889999999986533
No 90
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=84.13 E-value=1.3 Score=46.24 Aligned_cols=53 Identities=19% Similarity=0.136 Sum_probs=37.7
Q ss_pred CceEeecc-cchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcccccc
Q 013257 225 KEFIFSGR-LDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQG 280 (447)
Q Consensus 225 ~~~i~~ka-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~g 280 (447)
++++.|++ .|+..++++++.++..+... .. .....++++|+..||+|+.|+..
T Consensus 126 ~~~iyGrG~~D~kgg~a~~l~a~~~l~~~--~~-~~~~~i~~~~~~dEE~g~~G~~~ 179 (410)
T PRK06133 126 GDRAYGPGIADDKGGVAVILHALKILQQL--GF-KDYGTLTVLFNPDEETGSPGSRE 179 (410)
T ss_pred CCEEECCccccchHHHHHHHHHHHHHHHc--CC-CCCCCEEEEEECCcccCCccHHH
Confidence 45666655 79999999999888766431 10 12346788999999999876553
No 91
>PRK08262 hypothetical protein; Provisional
Probab=84.02 E-value=1.3 Score=47.38 Aligned_cols=52 Identities=19% Similarity=0.148 Sum_probs=38.8
Q ss_pred CceEeecc-cchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCccccc
Q 013257 225 KEFIFSGR-LDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQ 279 (447)
Q Consensus 225 ~~~i~~ka-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~ 279 (447)
++.+.|++ .|+..++++++.|++.+.+.. ......++++|+..||+|+.|+.
T Consensus 144 dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~---~~l~~~I~llf~~dEE~g~~G~~ 196 (486)
T PRK08262 144 DGYVWGRGALDDKGSLVAILEAAEALLAQG---FQPRRTIYLAFGHDEEVGGLGAR 196 (486)
T ss_pred CCEEEecCccccchhHHHHHHHHHHHHHcC---CCCCCeEEEEEecccccCCcCHH
Confidence 45677766 899999999999887765311 01245678999999999988753
No 92
>PRK07205 hypothetical protein; Provisional
Probab=83.48 E-value=2.3 Score=44.97 Aligned_cols=73 Identities=14% Similarity=0.159 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHh-CCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEech--h--hhccchHHhhcCHHHHHHHHHHH
Q 013257 355 NAVTSFVFREVASK-HNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGA--P--QLSMHSIREMCAVDDVKHSYEHF 429 (447)
Q Consensus 355 ~~~~~~~l~~~a~~-~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digi--P--~ryMHS~~E~~~~~Di~~~~~ll 429 (447)
+..+.+.+++++++ .+.+.-... .+|+|... ...|++.+|. | ...+|++.|-++++|+..+++++
T Consensus 365 ~~~lv~~l~~~~~~~~g~~~~~~~-----~gg~~~~~-----~~~~~i~~G~~~Pg~~~~aH~~nE~v~i~~l~~~~~~l 434 (444)
T PRK07205 365 DSELVSTLMSVYQEKTGDDSPAQS-----SGGATFAR-----TMPNCVAFGALFPGAPQTEHQANEHIVLEDLYRAMDIY 434 (444)
T ss_pred CcHHHHHHHHHHHHHhCCCCceEE-----eccHHHHH-----hCCCcEEECCccCCCCCCCcCcccCccHHHHHHHHHHH
Confidence 55677788877766 455432221 13444322 2347788884 5 46799999999999999999999
Q ss_pred HHHHHHhh
Q 013257 430 KAFFQEFS 437 (447)
Q Consensus 430 ~~f~~~~~ 437 (447)
..++.++.
T Consensus 435 ~~~l~~l~ 442 (444)
T PRK07205 435 AEAIYRLT 442 (444)
T ss_pred HHHHHHHh
Confidence 99998763
No 93
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=83.44 E-value=1.6 Score=44.18 Aligned_cols=44 Identities=14% Similarity=0.068 Sum_probs=34.0
Q ss_pred CceEeeccc-chhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCc
Q 013257 225 KEFIFSGRL-DNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGS 275 (447)
Q Consensus 225 ~~~i~~kal-Dnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGs 275 (447)
+++|.|++- |++.++++++.+++.+.. .+..+.++|+..||+|+
T Consensus 85 ~g~i~GrG~~D~Kg~~a~~l~a~~~l~~-------~~~~i~~~~~~~EE~~~ 129 (352)
T PRK13007 85 GDRLYGCGASDMKSGLAVMLHLAATLAE-------PAHDLTLVFYDCEEVEA 129 (352)
T ss_pred CCEEEccCcccccHHHHHHHHHHHHhhc-------cCCCeEEEEEecccccC
Confidence 456766665 999999999998877632 23457889999999976
No 94
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=82.99 E-value=1.7 Score=44.10 Aligned_cols=58 Identities=14% Similarity=-0.010 Sum_probs=33.5
Q ss_pred hchhhhcCCCcce-eccccceE--Eee---eEEEEc-----cCCeEEEEEeCCcccCCCCeEEEEeecCCCce
Q 013257 4 RGVCKQWGINRFQ-REKIGNWK--LAR---DTFFTR-----NHSTIIAFAVGKKYVAGNGFHVVGAHTDSPCL 65 (447)
Q Consensus 4 ~~~~~~~~~sG~E-~~~~~~w~--l~~---~~~~d~-----~~gnlia~~~g~~~~~~~~~vmi~AH~De~g~ 65 (447)
++|++...+||-| .+..+.+. ++. ++..+. ...||+|...++. .+.+++.||||-+..
T Consensus 4 ~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~nl~~~~~~~~----~~~i~l~~H~Dtvp~ 72 (364)
T TIGR01892 4 TKLVAFDSTSFRPNVDLIDWAQAYLEALGFSVEVQPFPDGAEKSNLVAVIGPSG----AGGLALSGHTDVVPY 72 (364)
T ss_pred HHhhCcCCcCCccHHHHHHHHHHHHHHcCCeEEEEeCCCCCccccEEEEecCCC----CCeEEEEcccccccC
Confidence 5666667777654 34444332 333 333332 1358999863322 346999999998743
No 95
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=82.80 E-value=1.5 Score=45.37 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=37.8
Q ss_pred CceEeeccc-chhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCc-ccccc
Q 013257 225 KEFIFSGRL-DNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGS-DSAQG 280 (447)
Q Consensus 225 ~~~i~~kal-Dnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGs-rga~g 280 (447)
++++.|++- |++.++++++.+++.+.... ...+..++++|+..||+|+ .|+..
T Consensus 102 dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~---~~~~~~v~l~~~~dEE~g~~~G~~~ 156 (400)
T TIGR01880 102 DGNIYARGAQDMKCVGVQYLEAVRNLKASG---FKFKRTIHISFVPDEEIGGHDGMEK 156 (400)
T ss_pred CCeEEEcccccccHHHHHHHHHHHHHHHcC---CCCCceEEEEEeCCcccCcHhHHHH
Confidence 346777766 99999999998887765311 1124568899999999986 36653
No 96
>PRK09133 hypothetical protein; Provisional
Probab=81.92 E-value=1.8 Score=46.16 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=37.7
Q ss_pred CceEeecc-cchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccc-cCccccc
Q 013257 225 KEFIFSGR-LDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEE-VGSDSAQ 279 (447)
Q Consensus 225 ~~~i~~ka-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEE-VGsrga~ 279 (447)
+++|.|++ .|++.++++++.+++.+...+ ......+++++++.|| .|+.|+.
T Consensus 131 dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~---~~~~~~i~~~~~~dEE~~g~~G~~ 184 (472)
T PRK09133 131 NGYFYGRGTSDDKADAAIWVATLIRLKREG---FKPKRDIILALTGDEEGTPMNGVA 184 (472)
T ss_pred CCEEEecCcccchHHHHHHHHHHHHHHhcC---CCCCCCEEEEEECccccCccchHH
Confidence 56788884 599999999999887764311 0124568899999999 5666554
No 97
>PRK07338 hypothetical protein; Provisional
Probab=81.84 E-value=1.8 Score=44.94 Aligned_cols=53 Identities=19% Similarity=0.023 Sum_probs=38.2
Q ss_pred CCceEeec-ccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCccccc
Q 013257 224 KKEFIFSG-RLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQ 279 (447)
Q Consensus 224 ~~~~i~~k-alDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~ 279 (447)
.++++.|+ +.|++.|+++++.|++.+.... ......+.++|+..||+|+.|+.
T Consensus 118 ~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~---~~~~~~i~~~~~~dEE~g~~g~~ 171 (402)
T PRK07338 118 DDGTLNGPGVADMKGGIVVMLAALLAFERSP---LADKLGYDVLINPDEEIGSPASA 171 (402)
T ss_pred eCCEEECCcHHhhhHHHHHHHHHHHHHHhcC---CCCCCCEEEEEECCcccCChhhH
Confidence 35678785 4999999999998887764311 01234577889999999987654
No 98
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=81.52 E-value=2 Score=43.90 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=35.7
Q ss_pred CCceEeeccc-chhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCc
Q 013257 224 KKEFIFSGRL-DNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGS 275 (447)
Q Consensus 224 ~~~~i~~kal-Dnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGs 275 (447)
.++++.|++- |++.++.+++.+++.+.+.. ......++++++..||.|.
T Consensus 88 ~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~---~~~~~~i~~~~~~~EE~~~ 137 (375)
T PRK13009 88 RDGMLYGRGAADMKGSLAAFVVAAERFVAAH---PDHKGSIAFLITSDEEGPA 137 (375)
T ss_pred ECCEEEecCCccChHHHHHHHHHHHHHHHhc---CCCCceEEEEEEeeccccc
Confidence 3567888766 99999999998887664311 1134567889999999864
No 99
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=81.51 E-value=2.1 Score=45.66 Aligned_cols=12 Identities=17% Similarity=-0.075 Sum_probs=10.3
Q ss_pred CeEEEEeecCCC
Q 013257 52 GFHVVGAHTDSP 63 (447)
Q Consensus 52 ~~vmi~AH~De~ 63 (447)
+.+++.+|+|-+
T Consensus 79 ~~l~~~gH~DvV 90 (466)
T TIGR01886 79 ERLGIIGHMDVV 90 (466)
T ss_pred CEEEEEeecccC
Confidence 469999999976
No 100
>PRK07522 acetylornithine deacetylase; Provisional
Probab=81.29 E-value=1.8 Score=44.35 Aligned_cols=49 Identities=16% Similarity=0.079 Sum_probs=35.2
Q ss_pred eEeec-ccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcccccc
Q 013257 227 FIFSG-RLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQG 280 (447)
Q Consensus 227 ~i~~k-alDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~g 280 (447)
++.|+ +.|++.++++++.+++.+.+. . ....++++|+..||+|++|+.-
T Consensus 96 ~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~---~~~~i~~~~~~dEE~g~~G~~~ 145 (385)
T PRK07522 96 RLYGRGTCDMKGFIAAALAAVPELAAA--P---LRRPLHLAFSYDEEVGCLGVPS 145 (385)
T ss_pred EEEeccccccchHHHHHHHHHHHHHhC--C---CCCCEEEEEEeccccCCccHHH
Confidence 34443 479999999999888766431 1 2345789999999999866553
No 101
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=80.76 E-value=1.7 Score=46.19 Aligned_cols=52 Identities=19% Similarity=0.111 Sum_probs=37.5
Q ss_pred CceEee-cccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCccccc
Q 013257 225 KEFIFS-GRLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQ 279 (447)
Q Consensus 225 ~~~i~~-kalDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~ 279 (447)
++++.| .+.|+..++++++.|+..+...+ . .....+.++++..||+|+.|+.
T Consensus 96 ~g~lyGRGa~D~KG~laa~l~a~~~l~~~~--~-~~~~~i~~~~~~dEE~g~~g~~ 148 (447)
T TIGR01887 96 DGRIYGRGTLDDKGPTIAALYAMKILKELG--L-KLKKKIRFIFGTDEETGWACID 148 (447)
T ss_pred CCEEEECCcccCcHHHHHHHHHHHHHHHcC--C-CCCCcEEEEEECCcccCcHhHH
Confidence 456766 45899999999998887664311 1 1244578899999999987755
No 102
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=80.03 E-value=2.2 Score=44.53 Aligned_cols=50 Identities=18% Similarity=-0.025 Sum_probs=37.2
Q ss_pred CceEeec-ccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCccc
Q 013257 225 KEFIFSG-RLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDS 277 (447)
Q Consensus 225 ~~~i~~k-alDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrg 277 (447)
+++|.|+ +.|++.++++++.|++.+.+.. ......+.++++..||+|+.+
T Consensus 113 dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~---~~~~~~v~~~~~~dEE~g~~~ 163 (427)
T PRK13013 113 DGRIYGRGACDMKGGLAASIIAAEAFLAVY---PDFAGSIEISGTADEESGGFG 163 (427)
T ss_pred CCEEEeccccccchHHHHHHHHHHHHHHhC---CCCCccEEEEEEeccccCChh
Confidence 4577776 8999999999998887765311 012456788999999998763
No 103
>PRK05469 peptidase T; Provisional
Probab=79.03 E-value=2.9 Score=43.56 Aligned_cols=43 Identities=26% Similarity=0.135 Sum_probs=31.8
Q ss_pred cchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCccccc
Q 013257 233 LDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQ 279 (447)
Q Consensus 233 lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~ 279 (447)
.|++.|+++++.|++.+.... ...+..+.++|+..||+| .|+.
T Consensus 139 ~D~Kgglaa~l~a~~~l~~~~---~~~~g~v~~~f~~dEE~g-~Ga~ 181 (408)
T PRK05469 139 ADDKAGIAEIMTALEYLIAHP---EIKHGDIRVAFTPDEEIG-RGAD 181 (408)
T ss_pred ccchHHHHHHHHHHHHHHhCC---CCCCCCEEEEEecccccC-CCHH
Confidence 899999999998887664310 012456889999999997 5554
No 104
>PRK06837 acetylornithine deacetylase; Provisional
Probab=78.02 E-value=2.9 Score=43.88 Aligned_cols=52 Identities=13% Similarity=-0.020 Sum_probs=36.5
Q ss_pred CCceEeeccc-chhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcccc
Q 013257 224 KKEFIFSGRL-DNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSA 278 (447)
Q Consensus 224 ~~~~i~~kal-Dnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga 278 (447)
.++++.|++- |++.|+.+++.|+..+.+.+ ...+..+++.++..||.|..|+
T Consensus 127 ~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~---~~~~~~i~~~~~~dEE~~g~g~ 179 (427)
T PRK06837 127 VDGWMYGRGAADMKAGLAAMLFALDALRAAG---LAPAARVHFQSVIEEESTGNGA 179 (427)
T ss_pred ECCEEEecCcccchHHHHHHHHHHHHHHHcC---CCCCCcEEEEEEeccccCCHhH
Confidence 4567888776 99999999998887664311 0123456788888899876553
No 105
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=77.84 E-value=1.6 Score=46.77 Aligned_cols=61 Identities=10% Similarity=0.004 Sum_probs=39.8
Q ss_pred hchhhhcCCCcceeccccceE--Eee---eEEEEccCCeEEEEEeCCcccCCCCeEEEEeecCCCce
Q 013257 4 RGVCKQWGINRFQREKIGNWK--LAR---DTFFTRNHSTIIAFAVGKKYVAGNGFHVVGAHTDSPCL 65 (447)
Q Consensus 4 ~~~~~~~~~sG~E~~~~~~w~--l~~---~~~~d~~~gnlia~~~g~~~~~~~~~vmi~AH~De~g~ 65 (447)
++|++...+||.|.+..+.+. ++. ++..+.. +|+++...|.....+.+.+++.+|||.+..
T Consensus 11 ~~l~~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~~-~n~~~~~~~~~g~~~~~~l~l~~HlDtV~~ 76 (477)
T TIGR01893 11 EEISKIPRPSKNEKEVSNFIVNWAKKLGLEVKQDEV-GNVLIRKPATPGYENHPPIVLQGHMDMVCE 76 (477)
T ss_pred HHHHcCCCCCccHHHHHHHHHHHHHHcCCeEEEeCC-CeEEEEEcCCCCCCCCCeEEEEeeccccCC
Confidence 355555566887877776553 554 6666765 799998755321112346999999998743
No 106
>PRK08262 hypothetical protein; Provisional
Probab=77.26 E-value=3.1 Score=44.53 Aligned_cols=77 Identities=8% Similarity=0.109 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHhCC--CCEEEEEeecCCCCCCChHHHHhcCC----CCcEEEechh-hhccchHHhhcCHHHHHHHHH
Q 013257 355 NAVTSFVFREVASKHN--LPVQDFVVRNDMACGSTIGPILASGV----GIRTVDVGAP-QLSMHSIREMCAVDDVKHSYE 427 (447)
Q Consensus 355 ~~~~~~~l~~~a~~~~--Ip~Q~~~~r~d~~~G~T~g~i~~a~~----Gi~t~digiP-~ryMHS~~E~~~~~Di~~~~~ 427 (447)
|..+...+++.+++.. .+..... .+|+|++.+..... +++++..|.- ...+|++.|-++++|+..+++
T Consensus 400 ~~~lv~~l~~a~~~~~g~~~~~~~~-----~~g~tDa~~~~~~~p~~~~~~~~~~gpg~~~~~Ht~dE~i~i~~l~~~~~ 474 (486)
T PRK08262 400 DSAAYKLLAATIREVFPDVVVAPYL-----VVGATDSRHYSGISDNVYRFSPLRLSPEDLARFHGTNERISVANYARMIR 474 (486)
T ss_pred CCHHHHHHHHHHHHHCCCCccccce-----ecccccHHHHHHhcCCeEEECCccCCcccccCCCCCCCceeHHHHHHHHH
Confidence 5677888888888754 3433222 24677765543321 1333333321 246899999999999999999
Q ss_pred HHHHHHHHh
Q 013257 428 HFKAFFQEF 436 (447)
Q Consensus 428 ll~~f~~~~ 436 (447)
++..++.++
T Consensus 475 i~~~~l~~~ 483 (486)
T PRK08262 475 FYYRLIENA 483 (486)
T ss_pred HHHHHHHHh
Confidence 999998776
No 107
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=76.66 E-value=4.9 Score=41.81 Aligned_cols=55 Identities=15% Similarity=0.045 Sum_probs=39.2
Q ss_pred ecccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEecccc-----CcccccccCCcchh
Q 013257 230 SGRLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEV-----GSDSAQGAGSPAML 287 (447)
Q Consensus 230 ~kalDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEV-----Gsrga~gA~~~~~p 287 (447)
|.++|++.|+.+++++++.+++.. ..+...+.+++++.||. |+.|+........+
T Consensus 82 gg~~dg~~gvaa~l~a~~~l~~~g---~~~~~~i~~~~~~dEE~~~f~~~~~Gs~~~~~~~~~ 141 (401)
T TIGR01879 82 GGNFDGQLGVLAGIEVVDALKEAY---VVPLHPIEVVAFTEEEGSRFPYGMWGSRNMVGLANP 141 (401)
T ss_pred CCccCCHHHHHHHHHHHHHHHHcC---CCCCCCeEEEEEeCCcCcCcccccccHHHHhcccch
Confidence 568999999999999988775421 11345688999999996 66676665544433
No 108
>PRK06156 hypothetical protein; Provisional
Probab=75.69 E-value=6 Score=42.90 Aligned_cols=74 Identities=14% Similarity=0.171 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHH-hCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhh----hccchHHhhcCHHHHHHHHHHH
Q 013257 355 NAVTSFVFREVAS-KHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQ----LSMHSIREMCAVDDVKHSYEHF 429 (447)
Q Consensus 355 ~~~~~~~l~~~a~-~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~----ryMHS~~E~~~~~Di~~~~~ll 429 (447)
+..+...+.+.++ ..|.+..... .+|+|++.+. .+++..|--. ..||++.|.++++++..+++++
T Consensus 438 d~~lv~~l~~a~~~~~G~~~~~~~-----~~ggTDa~~~-----~~~v~fGP~~~g~~~~aHt~dE~V~ie~l~~~~~i~ 507 (520)
T PRK06156 438 KGPWLKTLLDVFGHFTGLDAKPVA-----IAGSTNAKLF-----PNAVSFGPAMPGVKYTGHTENEFKTVEQFMLDLQMY 507 (520)
T ss_pred CCHHHHHHHHHHHHHhCCCCceee-----ecChhhhhhC-----CccEEEcCCCCCCCCCCcCcccCCCHHHHHHHHHHH
Confidence 3345555555544 4566555433 2567766553 1466667421 2489999999999999999999
Q ss_pred HHHHHHhhh
Q 013257 430 KAFFQEFSE 438 (447)
Q Consensus 430 ~~f~~~~~~ 438 (447)
..++..+..
T Consensus 508 ~~~l~~l~~ 516 (520)
T PRK06156 508 TEMLIRIGN 516 (520)
T ss_pred HHHHHHHhc
Confidence 999988865
No 109
>PRK07079 hypothetical protein; Provisional
Probab=75.04 E-value=3.9 Score=43.53 Aligned_cols=54 Identities=17% Similarity=0.012 Sum_probs=36.5
Q ss_pred CceEeec-ccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcccccc
Q 013257 225 KEFIFSG-RLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQG 280 (447)
Q Consensus 225 ~~~i~~k-alDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~g 280 (447)
++++.|+ +.|++.++++++.|++.+.+.. . ......++++++..||+|+.|..-
T Consensus 117 dg~lyGRGa~DmKgg~aa~l~A~~~l~~~~-~-~~~~~~i~~~~~~dEE~g~~G~~~ 171 (469)
T PRK07079 117 GDRWYGRGTADNKGQHTINLAALEQVLAAR-G-GRLGFNVKLLIEMGEEIGSPGLAE 171 (469)
T ss_pred CCEEEEEeccCCcHHHHHHHHHHHHHHHhc-C-CCCCCCEEEEEECccccCCccHHH
Confidence 4566665 5899999998888877653110 0 012445789999999999865543
No 110
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=74.05 E-value=4.7 Score=42.26 Aligned_cols=60 Identities=13% Similarity=-0.027 Sum_probs=42.4
Q ss_pred EeecccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccC-----cccccccCCcchhhHH
Q 013257 228 IFSGRLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVG-----SDSAQGAGSPAMLDAL 290 (447)
Q Consensus 228 i~~kalDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVG-----srga~gA~~~~~pd~l 290 (447)
-.|.++|+.+|+.+++++++.+.+.. . .++..+-+++|..||-+ ..|++..+..+.++.+
T Consensus 82 ~~gG~~dg~~Gv~~~le~~~~l~~~~--~-~~~~~i~vi~~~~EEg~rf~~~~~Gs~~~~g~~~~~~~ 146 (406)
T TIGR03176 82 VNGGNLDGQFGALAAWLAVDYLKEKY--G-APLRTVEVLSMAEEEGSRFPYVFWGSKNIFGLAKPEDV 146 (406)
T ss_pred CCCCccCchhhHHHHHHHHHHHHHcC--C-CCCCCeEEEEeccccCccCCcccccHHHHhCCCCHHHH
Confidence 46899999999999999998876421 1 12344667778888865 6777777765555443
No 111
>PRK07906 hypothetical protein; Provisional
Probab=72.14 E-value=4.9 Score=42.03 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=36.7
Q ss_pred CCceEeecc-cchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcc-ccc
Q 013257 224 KKEFIFSGR-LDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSD-SAQ 279 (447)
Q Consensus 224 ~~~~i~~ka-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsr-ga~ 279 (447)
.++++.|+. .|++.++++++.+++.+.+.. ......+.++++..||+|+. |+.
T Consensus 94 ~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~---~~~~~~i~~~~~~dEE~g~~~g~~ 148 (426)
T PRK07906 94 RDGYVWGRGAVDMKDMDAMMLAVVRHLARTG---RRPPRDLVFAFVADEEAGGTYGAH 148 (426)
T ss_pred eCCEEEecCccccchHHHHHHHHHHHHHHcC---CCCCccEEEEEecCcccchhhhHH
Confidence 345676655 699999999999987764311 01244578899999999763 443
No 112
>PRK13004 peptidase; Reviewed
Probab=70.30 E-value=5.7 Score=41.20 Aligned_cols=48 Identities=17% Similarity=-0.086 Sum_probs=34.5
Q ss_pred CCceEeeccc-chhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccC
Q 013257 224 KKEFIFSGRL-DNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVG 274 (447)
Q Consensus 224 ~~~~i~~kal-Dnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVG 274 (447)
.++.+.|++- ||+.++++++.|++.+.+.+ . .....++++++..||.+
T Consensus 99 ~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~--~-~~~~~i~~~~~~~EE~~ 147 (399)
T PRK13004 99 DDGRIYGRGTSDQKGGMASMVYAAKIIKDLG--L-DDEYTLYVTGTVQEEDC 147 (399)
T ss_pred ECCEEEeCCccccchHHHHHHHHHHHHHhcC--C-CCCCeEEEEEEcccccC
Confidence 3567888766 99999999999887765311 1 12445788899999964
No 113
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=69.35 E-value=8.1 Score=39.86 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=33.1
Q ss_pred ceEeeccc-chhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCc
Q 013257 226 EFIFSGRL-DNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGS 275 (447)
Q Consensus 226 ~~i~~kal-Dnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGs 275 (447)
+++.|+.- |++.|+++++.|+..+.... ........+.+++++.||+|+
T Consensus 94 g~lyGRGa~DmKgg~aa~l~a~~~l~~~~-~~~~~~~~i~~~~~~dEE~~~ 143 (373)
T TIGR01900 94 GILWGCGATDMKAGDAVMLHLAATLDGRA-PETELKHDLTLIAYDCEEVAA 143 (373)
T ss_pred CEEEecCchhhhHHHHHHHHHHHHHhhhc-cccCCCCCEEEEEEecccccC
Confidence 35666665 99999999998887663100 000124457889999999974
No 114
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=69.00 E-value=5.8 Score=41.40 Aligned_cols=41 Identities=22% Similarity=0.159 Sum_probs=30.5
Q ss_pred cccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccC
Q 013257 231 GRLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVG 274 (447)
Q Consensus 231 kalDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVG 274 (447)
..+|++.|+++++.+++.+.+.+ ......+++++++.||.|
T Consensus 89 g~~d~k~g~aa~l~a~~~l~~~~---~~~~~~i~~~~~~dEE~g 129 (413)
T PRK09290 89 GRFDGPLGVLAGLEAVRTLNERG---IRPRRPIEVVAFTNEEGS 129 (413)
T ss_pred CCcCCHHHHHHHHHHHHHHHHcC---CCCCCCeEEEEEcCCccc
Confidence 45799999999999888775311 112456889999999995
No 115
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=68.71 E-value=3.5 Score=42.13 Aligned_cols=59 Identities=14% Similarity=0.015 Sum_probs=38.8
Q ss_pred hhchhhhcCCCcceeccccceE--Eee---eEEE-EccCCeEEEEEeCCcccCCCCeEEEEeecCCCc
Q 013257 3 RRGVCKQWGINRFQREKIGNWK--LAR---DTFF-TRNHSTIIAFAVGKKYVAGNGFHVVGAHTDSPC 64 (447)
Q Consensus 3 ~~~~~~~~~~sG~E~~~~~~w~--l~~---~~~~-d~~~gnlia~~~g~~~~~~~~~vmi~AH~De~g 64 (447)
.++|++...+||.|.+..+... +++ ++.. ....+|++|...++.+ .+.+++.+|||-+.
T Consensus 5 ~~~L~~ips~s~~E~~~a~~l~~~l~~~g~~~~~~~~~~~~vva~~~~~~~---~~~i~l~gH~DtVp 69 (363)
T TIGR01891 5 RRHLHEHPELSFEEFKTSSLIAEALESLGIEVRRGVGGATGVVATIGGGKP---GPVVALRADMDALP 69 (363)
T ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHcCCceEecCCCCcEEEEEEeCCCC---CCEEEEEeccCCCC
Confidence 4577777888988877666653 555 3332 1223689988644321 34699999999875
No 116
>PRK06446 hypothetical protein; Provisional
Probab=68.01 E-value=6.1 Score=41.66 Aligned_cols=49 Identities=20% Similarity=0.127 Sum_probs=35.0
Q ss_pred eEee-cccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCccccc
Q 013257 227 FIFS-GRLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQ 279 (447)
Q Consensus 227 ~i~~-kalDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~ 279 (447)
++.| .+-|++.|+++++.|++.+.... . ....+.++|+..||+|+.|+.
T Consensus 95 ~lyGRGa~DmKgglaa~l~A~~~l~~~~-~---~~~~i~~~~~~dEE~g~~g~~ 144 (436)
T PRK06446 95 RIYARGASDNKGTLMARLFAIKHLIDKH-K---LNVNVKFLYEGEEEIGSPNLE 144 (436)
T ss_pred EEEEEeccCCcHHHHHHHHHHHHHHHcC-C---CCCCEEEEEEcccccCCHhHH
Confidence 4444 45899999999999987764211 1 234578899999999987643
No 117
>PLN02280 IAA-amino acid hydrolase
Probab=67.47 E-value=11 Score=40.54 Aligned_cols=78 Identities=15% Similarity=0.002 Sum_probs=53.5
Q ss_pred cCHHHHHHHHHHHHhC-CCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEe--ch------hhhccchHHhhcCHHHHHH
Q 013257 354 TNAVTSFVFREVASKH-NLPVQDFVVRNDMACGSTIGPILASGVGIRTVDV--GA------PQLSMHSIREMCAVDDVKH 424 (447)
Q Consensus 354 t~~~~~~~l~~~a~~~-~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~di--gi------P~ryMHS~~E~~~~~Di~~ 424 (447)
.++.+.+.+++++.+. +.+..... ...+|+|++.+... ++|++.. |. +...+|++.|.++.+++..
T Consensus 387 n~~~l~~~~~~~a~~~~G~~~~~~~---~~~~g~tD~~~~~~--~vP~i~~glG~~~~~~G~~~~~Htp~e~id~~~L~~ 461 (478)
T PLN02280 387 NNDAMYEHVRKVAIDLLGPANFTVV---PPMMGAEDFSFYSQ--VVPAAFYYIGIRNETLGSTHTGHSPYFMIDEDVLPI 461 (478)
T ss_pred CCHHHHHHHHHHHHHhcCccccccC---CCCeeechHHHHHh--hCCEEEEEEeecCCCCCCCCCCCCCCCcCCHHHHHH
Confidence 3778888888888663 54422111 11246776544433 4999877 32 1236899999999999999
Q ss_pred HHHHHHHHHHHh
Q 013257 425 SYEHFKAFFQEF 436 (447)
Q Consensus 425 ~~~ll~~f~~~~ 436 (447)
.++++..++..+
T Consensus 462 ~~~~~~~~~~~~ 473 (478)
T PLN02280 462 GAAVHAAIAERY 473 (478)
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 118
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=66.83 E-value=7 Score=43.22 Aligned_cols=60 Identities=12% Similarity=-0.138 Sum_probs=40.2
Q ss_pred eEeecccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEecccc-----CcccccccCCcchhhH
Q 013257 227 FIFSGRLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEV-----GSDSAQGAGSPAMLDA 289 (447)
Q Consensus 227 ~i~~kalDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEV-----Gsrga~gA~~~~~pd~ 289 (447)
...|.++|+++|+.+++++++.+.+.+ . .+...+.+++|+.||- ++.|+...+..+.++.
T Consensus 263 V~~gG~~DG~~Gv~a~lea~~~l~~~~--~-~~~~~i~vv~~~~EEg~rF~~~~~GS~~~~G~~~~~~ 327 (591)
T PRK13590 263 VRNGGKYDGRLGIFVPMACVRELHRQG--R-RLPFGLEVVGFAEEEGQRYKATFLGSGALIGDFDPAW 327 (591)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHcC--C-CCCCCeEEEEecCCccccCCccccchHHHhCCChHHH
Confidence 346888999999999999998886421 1 1233577889999996 3445554333444444
No 119
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=63.99 E-value=8.3 Score=42.62 Aligned_cols=61 Identities=11% Similarity=-0.072 Sum_probs=42.2
Q ss_pred ceEeecccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEecccc-----CcccccccCCcchhhH
Q 013257 226 EFIFSGRLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEV-----GSDSAQGAGSPAMLDA 289 (447)
Q Consensus 226 ~~i~~kalDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEV-----Gsrga~gA~~~~~pd~ 289 (447)
....|.++|.++|+.+++++++.+...+ . .....+.++++..||- ++.|++..+..+.++.
T Consensus 262 TV~~gG~~DG~~Gv~a~l~~~~~l~~~~--~-~~~~~i~vi~~~~EEg~rF~~~~~GS~~~~G~~~~~~ 327 (591)
T PRK13799 262 TVRNGGKYDGREGIFLAIACVKELHEQG--E-RLPFHFEVIAFAEEEGQRFKATFLGSGALIGDFNMEL 327 (591)
T ss_pred ccCCCCccccHHHHHHHHHHHHHHHHcC--C-CCCCCeEEEEecCCCccCCCccccchHHHhCCChHHH
Confidence 3457999999999999999998876321 1 1233577888889996 5666666655444443
No 120
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=62.79 E-value=3.5 Score=43.12 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=25.1
Q ss_pred eEEEEccCCeEEEEEeCCcccCCCCeEEEEeecCCCc
Q 013257 28 DTFFTRNHSTIIAFAVGKKYVAGNGFHVVGAHTDSPC 64 (447)
Q Consensus 28 ~~~~d~~~gnlia~~~g~~~~~~~~~vmi~AH~De~g 64 (447)
++..+.. +||+|...|.++ +.+.+|+.+|+|.+-
T Consensus 56 ~v~~~~~-gNl~a~~~g~~~--~~~~l~~~~H~DtVp 89 (414)
T PRK12891 56 TVRVDAM-GNLFARRAGRDP--DAAPVMTGSHADSQP 89 (414)
T ss_pred EEEECCC-CCEEEEecCCCC--CCCeEEEEecccCCC
Confidence 7777775 799998766432 135699999999983
No 121
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=62.00 E-value=9 Score=39.93 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=31.8
Q ss_pred ecccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCc
Q 013257 230 SGRLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGS 275 (447)
Q Consensus 230 ~kalDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGs 275 (447)
+.++|++.|+.+++.+++.+.+.+ ......+.+++++.||.|.
T Consensus 89 ~g~~D~~~g~aa~l~a~~~l~~~~---~~~~~~i~~~~~~dEE~~~ 131 (414)
T PRK12890 89 GGRYDGILGVLAGLEVVAALREAG---IRPPHPLEVIAFTNEEGVR 131 (414)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHcC---CCCCCCeEEEEEecccccc
Confidence 456899999999999888765311 1124568899999999743
No 122
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=61.62 E-value=8.4 Score=40.06 Aligned_cols=52 Identities=13% Similarity=0.042 Sum_probs=36.0
Q ss_pred ecccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccC-----cccccccCCc
Q 013257 230 SGRLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVG-----SDSAQGAGSP 284 (447)
Q Consensus 230 ~kalDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVG-----srga~gA~~~ 284 (447)
+..+|++.|+.+++.+++.+.... ...+..+.++++..||.| +.|+......
T Consensus 91 ~g~~dgk~gvaa~l~a~~~l~~~~---~~~~~~v~~~~~~dEE~g~~~~~~~G~~~~~~~ 147 (412)
T PRK12893 91 GGRFDGALGVLAALEVVRTLNDAG---IRTRRPIEVVSWTNEEGARFAPAMLGSGVFTGA 147 (412)
T ss_pred CCcccchhhHHHHHHHHHHHHHcC---CCCCCCeEEEEEccccccccccccccHHHHhCc
Confidence 445799999999998888775311 112456899999999986 5555444333
No 123
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=59.80 E-value=9.6 Score=39.39 Aligned_cols=25 Identities=36% Similarity=0.339 Sum_probs=19.7
Q ss_pred CeEEEEEeCCcccCCCCeEEEEeecCCCc
Q 013257 36 STIIAFAVGKKYVAGNGFHVVGAHTDSPC 64 (447)
Q Consensus 36 gnlia~~~g~~~~~~~~~vmi~AH~De~g 64 (447)
.||||...|+. .+.+|+.||+|.++
T Consensus 98 ~nVIa~~~G~~----~~~Ill~AH~DTV~ 122 (346)
T PRK10199 98 STVIAAHEGKA----PQQIIIMAHLDTYA 122 (346)
T ss_pred ceEEEEECCCC----CCeEEEEEEcCcCC
Confidence 57999886643 34699999999986
No 124
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=59.03 E-value=5.2 Score=40.40 Aligned_cols=56 Identities=7% Similarity=0.033 Sum_probs=39.5
Q ss_pred hhchhhhcCCCcceeccccceE--Eee---eEEEEccCCeEEEEEeCCcccCCCCeEEEEeecCCCc
Q 013257 3 RRGVCKQWGINRFQREKIGNWK--LAR---DTFFTRNHSTIIAFAVGKKYVAGNGFHVVGAHTDSPC 64 (447)
Q Consensus 3 ~~~~~~~~~~sG~E~~~~~~w~--l~~---~~~~d~~~gnlia~~~g~~~~~~~~~vmi~AH~De~g 64 (447)
.++|++...+||.|.+..+.++ ++. +++.+.. +|+++.. ++. .+.+++.+|+|-+.
T Consensus 3 l~~lv~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~~~-~~~~~~~-~~~----~~~i~~~~H~D~vp 63 (336)
T TIGR01902 3 LKDLLEIYSPSGKEANAAKFLEEISKDLGLKLIIDDA-GNFILGK-GDG----HKKILLAGHVDTVP 63 (336)
T ss_pred HHHHhcCCCCCcchHHHHHHHHHHHHHcCCEEEECCC-CcEEEEe-CCC----CceEEEEccccccC
Confidence 4678888888999877777664 555 5555554 6888754 322 34699999999873
No 125
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=58.49 E-value=10 Score=39.28 Aligned_cols=50 Identities=16% Similarity=0.005 Sum_probs=34.6
Q ss_pred ecccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccC-----cccccccC
Q 013257 230 SGRLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVG-----SDSAQGAG 282 (447)
Q Consensus 230 ~kalDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVG-----srga~gA~ 282 (447)
+..+|++.|+++++.+++.+.... ......+.+++++.||.| ..|++...
T Consensus 89 ~g~~dg~~Gvaa~l~a~~~l~~~~---~~~~~~i~~~~~~dEE~~~~~~~~~Gs~~~~ 143 (412)
T PRK12892 89 GGRYDGALGVVAGLEAARALNEHG---IATRHPLDVVAWCDEEGSRFTPGFLGSRAYA 143 (412)
T ss_pred CCcccchHHHHHHHHHHHHHHHcC---CCCCCCeEEEEecCcccccccCccccHHHHH
Confidence 345799999999999988775311 012456889999999984 45555443
No 126
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=58.32 E-value=69 Score=32.02 Aligned_cols=121 Identities=9% Similarity=0.004 Sum_probs=74.4
Q ss_pred HhhhcceEEEEecCCCCCCCC-CCCCCCCCCCccCCccEEEEcCC-------CccccCHHHHHHHHHHHHhCCCCEEEEE
Q 013257 306 KAIQRSFLVSADMAHALHPNY-MDKHEDNHQPKLHGGLVIKHNAN-------QRYATNAVTSFVFREVASKHNLPVQDFV 377 (447)
Q Consensus 306 ~~~~~s~aIs~Dv~ha~~P~~-~~~~~~~~~~~LG~Gp~ik~~~~-------~~~~t~~~~~~~l~~~a~~~~Ip~Q~~~ 377 (447)
+..+||.+|.++.=|+. +| .+. .-+..+|.|..+...+- -.+-.|+.+.+.|.+.+.+.+++.....
T Consensus 45 ~~~~PDviVvi~sdH~~--~f~~d~---~p~f~Ig~~~~~~~~~~g~~~~~~~~~~g~~eLA~~i~~~~~~~g~~~~~~~ 119 (279)
T PRK13365 45 AEQKADVLVFFYNDHCT--TFFFDL---YPTFALGVGERFPVADEGAGLRPLPPIRGDVQLQAHIAECLVNDEFDLTVFQ 119 (279)
T ss_pred HHhCCCEEEEEcCchHH--Hhcccc---CCceEEEecccccccccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCeeecc
Confidence 44789999999888874 22 111 11233455554422111 1244589999999999999999987543
Q ss_pred eecCCCCCCChHHHHhcCC--C---CcEEEechhhhccchHHhhcCHHHHHHHHHHHHHHHHHhh
Q 013257 378 VRNDMACGSTIGPILASGV--G---IRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQEFS 437 (447)
Q Consensus 378 ~r~d~~~G~T~g~i~~a~~--G---i~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f~~~~~ 437 (447)
.+. --=||.-|+...+. . +|++.|++++.+ ++ +.+......+-+.|..++++++
T Consensus 120 ~~~--lDHG~~vPL~~l~~~~~~~~~pvVpi~in~~~-~p---~~~~~~~~~lG~al~~~i~~~~ 178 (279)
T PRK13365 120 DKP--IDHGCAAPLPLLWPHVPDWPGTVVPIAINVLQ-YP---LPTARRCYRLGQALRRAIESYP 178 (279)
T ss_pred CCC--CCchhhhHHHHhCCccccCCCCeEEEEEeccc-CC---CCCHHHHHHHHHHHHHHHHhcC
Confidence 210 11245555544332 3 889999988653 22 3356677888888888887763
No 127
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=55.34 E-value=18 Score=38.13 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=41.0
Q ss_pred eEeecccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccC-cccccccCC
Q 013257 227 FIFSGRLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVG-SDSAQGAGS 283 (447)
Q Consensus 227 ~i~~kalDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVG-srga~gA~~ 283 (447)
...=.+.|+++...+.++|++.+.... -.+..++++.|-..|||| -.|+.+.+.
T Consensus 122 IyaRGaqD~K~~~va~leAir~L~~~g---~kp~Rti~lsfvpDEEi~G~~Gm~~fa~ 176 (420)
T KOG2275|consen 122 IYARGAQDMKCVGVAYLEAIRNLKASG---FKPKRTIHLSFVPDEEIGGHIGMKEFAK 176 (420)
T ss_pred EEeccccchHhHHHHHHHHHHHHHhcC---CCcCceEEEEecCchhccCcchHHHHhh
Confidence 334457999999999999999886321 123566788899999998 778877776
No 128
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=55.27 E-value=17 Score=37.78 Aligned_cols=74 Identities=12% Similarity=0.047 Sum_probs=49.2
Q ss_pred CceEeec-ccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcccccccCCcchhhHHHHHhhccCCChHH
Q 013257 225 KEFIFSG-RLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQGAGSPAMLDALSRITNSFCSNSKL 303 (447)
Q Consensus 225 ~~~i~~k-alDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~gA~~~~~pd~l~ri~~~~~~~~~~ 303 (447)
++++.|+ +.|+.-+.++++.|++.+...+ ......+.++++..||+|+.+.........+
T Consensus 106 dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~---~~~~~~v~~~~~~dEE~g~~~~~~~~~~~~~---------------- 166 (409)
T COG0624 106 DGKLYGRGAADMKGGLAAALYALSALKAAG---GELPGDVRLLFTADEESGGAGGKAYLEEGEE---------------- 166 (409)
T ss_pred CCEEEecCccccchHHHHHHHHHHHHHHhC---CCCCeEEEEEEEeccccCCcchHHHHHhcch----------------
Confidence 3467776 4799999999999888765311 0124567889999999998665543222111
Q ss_pred HHHhhhcceEEEEec
Q 013257 304 IEKAIQRSFLVSADM 318 (447)
Q Consensus 304 ~~~~~~~s~aIs~Dv 318 (447)
...+.++++|..|-
T Consensus 167 -~~~~~~d~~i~~E~ 180 (409)
T COG0624 167 -ALGIRPDYEIVGEP 180 (409)
T ss_pred -hhccCCCEEEeCCC
Confidence 02356788998887
No 129
>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame
Probab=51.16 E-value=2.5e+02 Score=27.85 Aligned_cols=77 Identities=14% Similarity=0.004 Sum_probs=47.6
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhc--CCCCcEEEechhhhccchHHhhcCHHHHHHHHHHHH
Q 013257 353 ATNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILAS--GVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFK 430 (447)
Q Consensus 353 ~t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a--~~Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~ 430 (447)
-.|+.+.+.+.+.++++||+........-.--=||.-|+... ...+|++-|++++- +.+ ......+-+.+.
T Consensus 89 ~g~~~LA~~i~~~l~~~Gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~vs~~~~-~~~------~~~~~~lG~ai~ 161 (272)
T cd07362 89 PGDPELGRLLVEEGQEAGLRVKAVNDPTYIWDYGTVVPLRYLNPNKDIPVVSISACWT-AAS------LEESYTWGEVIG 161 (272)
T ss_pred CCCHHHHHHHHHHHHHcCCceeeccCCCCCCCcchHHHHHHhCCCCCCcEEEEeccCC-CCC------HHHHHHHHHHHH
Confidence 348999999999999999998742210000012455555443 35699999999864 333 334445555555
Q ss_pred HHHHHh
Q 013257 431 AFFQEF 436 (447)
Q Consensus 431 ~f~~~~ 436 (447)
..++.+
T Consensus 162 ~al~~~ 167 (272)
T cd07362 162 KALLES 167 (272)
T ss_pred HHHHhh
Confidence 555555
No 130
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=50.97 E-value=2.7e+02 Score=27.82 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=50.0
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEeecCC-CCCCChHHHHh--cCCCCcEEEechhhhccchHHhhcCHHHHHHHHHHHH
Q 013257 354 TNAVTSFVFREVASKHNLPVQDFVVRNDM-ACGSTIGPILA--SGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFK 430 (447)
Q Consensus 354 t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~-~~G~T~g~i~~--a~~Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~ 430 (447)
.|+.+.+.|.+.+++.||+........ . --=||.-|... -...+|++.|+++++. + +..+...+-+.|.
T Consensus 94 gd~eLA~~i~~~~~~~gi~~~~~~~~~-~~lDHG~~vPL~~l~p~~~ipvV~is~~~~~-~------~~~~~~~lG~al~ 165 (282)
T TIGR02298 94 GNPALGQLIADEAQEHGVKTLAHQVPS-LGLEYGTLVPMRYMNEDGHFKVVSIAAWCTV-H------DIEESRALGEAIR 165 (282)
T ss_pred CCHHHHHHHHHHHHHCCCceeeccCCC-CCCCeehHhHHHHhCCCCCCcEEEEeecCCC-C------CHHHHHHHHHHHH
Confidence 489999999999999999987311110 0 01245445443 3456999999998663 2 4556667777777
Q ss_pred HHHHHh
Q 013257 431 AFFQEF 436 (447)
Q Consensus 431 ~f~~~~ 436 (447)
.++++.
T Consensus 166 ~~i~~~ 171 (282)
T TIGR02298 166 KAIEQS 171 (282)
T ss_pred HHHHhc
Confidence 776654
No 131
>PLN02693 IAA-amino acid hydrolase
Probab=50.61 E-value=11 Score=39.98 Aligned_cols=79 Identities=15% Similarity=-0.027 Sum_probs=54.1
Q ss_pred ccCHHHHHHHHHHHHh-CCCCEEEEEeecCCCCCCChHHHHhcCCCCcEE--Eechh-----hhccchHHhhcCHHHHHH
Q 013257 353 ATNAVTSFVFREVASK-HNLPVQDFVVRNDMACGSTIGPILASGVGIRTV--DVGAP-----QLSMHSIREMCAVDDVKH 424 (447)
Q Consensus 353 ~t~~~~~~~l~~~a~~-~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~--digiP-----~ryMHS~~E~~~~~Di~~ 424 (447)
..|+.+.+.+++.+++ .|.+...... ..+|+++..+... .+|++ -+|.- .-..||+.+.++.+-+..
T Consensus 334 ~nd~~l~~~~~~~~~~~~G~~~~~~~~---~~~gseDf~~~~~--~vP~~~~~lG~~~~~~~~~~~H~~~f~~de~~l~~ 408 (437)
T PLN02693 334 VNNMDLYKQFKKVVRDLLGQEAFVEAA---PEMGSEDFSYFAE--TIPGHFSLLGMQDETNGYASSHSPLYRINEDVLPY 408 (437)
T ss_pred cCCHHHHHHHHHHHHHhcCCcceeecC---CCceechHHHHHH--HhhhhEEEEecCCCCCCCCCCCCCCcCCCHHHHHH
Confidence 3477899999999988 4765322211 1346776544433 67876 55542 236899999999999988
Q ss_pred HHHHHHHHHHHh
Q 013257 425 SYEHFKAFFQEF 436 (447)
Q Consensus 425 ~~~ll~~f~~~~ 436 (447)
.++++..++.++
T Consensus 409 ~~~~~~~~~~~~ 420 (437)
T PLN02693 409 GAAIHATMAVQY 420 (437)
T ss_pred HHHHHHHHHHHH
Confidence 888887776655
No 132
>PRK08737 acetylornithine deacetylase; Provisional
Probab=49.43 E-value=21 Score=36.77 Aligned_cols=41 Identities=15% Similarity=0.001 Sum_probs=30.3
Q ss_pred CceEeecc-cchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCc
Q 013257 225 KEFIFSGR-LDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGS 275 (447)
Q Consensus 225 ~~~i~~ka-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGs 275 (447)
++++.|++ .|.+.++++++.|+... ...+.+++++.||+|+
T Consensus 92 ~g~lyGrGa~DmKg~~aa~l~a~~~~----------~~~v~~~~~~dEE~g~ 133 (364)
T PRK08737 92 DDRVIGLGVCDIKGAAAALLAAANAG----------DGDAAFLFSSDEEAND 133 (364)
T ss_pred CCEEEEECcccchHHHHHHHHHHHcc----------CCCEEEEEEcccccCc
Confidence 45677765 55578888888887642 2347899999999987
No 133
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=47.98 E-value=73 Score=31.79 Aligned_cols=121 Identities=9% Similarity=0.013 Sum_probs=71.2
Q ss_pred HhhhcceEEEEecCCCCCCCCCCCCCCCCCCccCCccEEEEcCC-------CccccCHHHHHHHHHHHHhCCCCEEEEEe
Q 013257 306 KAIQRSFLVSADMAHALHPNYMDKHEDNHQPKLHGGLVIKHNAN-------QRYATNAVTSFVFREVASKHNLPVQDFVV 378 (447)
Q Consensus 306 ~~~~~s~aIs~Dv~ha~~P~~~~~~~~~~~~~LG~Gp~ik~~~~-------~~~~t~~~~~~~l~~~a~~~~Ip~Q~~~~ 378 (447)
+..+||.+|.++.=|+..-.+ + ..-...+|.|..+...+. ..+-.|+.+.+.|.+.+.+.+++......
T Consensus 45 ~~~~PD~iVvi~~dH~~~f~~-d---~~p~f~Ig~~~~~~~~d~~~~~~~~~~~~g~~~LA~~i~~~~~~~g~~~~~~~~ 120 (277)
T cd07950 45 AEQKPDVLFMVYNDHVTSFFF-D---HYSAFALGVGDSYEVADEGGGPRDLPPIRGHAALAQHIAESLVADEFDLTFFQD 120 (277)
T ss_pred HHhCCCEEEEEcCcHHHHhcc-c---cCCcEEEEecccccccccccCCccCCCCCCCHHHHHHHHHHHHhcCCCeeeccC
Confidence 457899999998766643211 1 011223344444432221 12445899999999999999999876432
Q ss_pred ecCCCCCCChHHHHhcC-----CCCcEEEechhhhccchHHhhcCHHHHHHHHHHHHHHHHHh
Q 013257 379 RNDMACGSTIGPILASG-----VGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQEF 436 (447)
Q Consensus 379 r~d~~~G~T~g~i~~a~-----~Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f~~~~ 436 (447)
+. --=||.-|....+ .-+|++.|++|+...= +-+......+-+.|..+++++
T Consensus 121 ~~--lDHG~~vPL~~l~p~~~~~~~~vVpi~~~~~~~~----l~~~~~~~~lG~al~~~i~~~ 177 (277)
T cd07950 121 KP--LDHGCFSPLSLLLPHEDGWPVKVVPLQVGVLQFP----LPTARRCYKLGQALRRAIESY 177 (277)
T ss_pred CC--CCceeeeeHHHhCcccccCCCceEEEEEEeEecC----CCCHHHHHHHHHHHHHHHHhc
Confidence 10 0113333433322 2366888888876322 125667777888888888776
No 134
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=47.60 E-value=13 Score=37.67 Aligned_cols=58 Identities=12% Similarity=0.037 Sum_probs=33.9
Q ss_pred hchhhhcCCCcceeccccceE--Eee---eEEEEc------cCCeEEEEEeCCcccCCCCeEEEEeecCCCc
Q 013257 4 RGVCKQWGINRFQREKIGNWK--LAR---DTFFTR------NHSTIIAFAVGKKYVAGNGFHVVGAHTDSPC 64 (447)
Q Consensus 4 ~~~~~~~~~sG~E~~~~~~w~--l~~---~~~~d~------~~gnlia~~~g~~~~~~~~~vmi~AH~De~g 64 (447)
++|.+...++|.|.+..+... ++. ++..+. ...|+++...|+.. .+.+++.||||-+-
T Consensus 7 ~~l~~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~i~l~~H~D~V~ 75 (361)
T TIGR01883 7 LELIQIDSESGKEKAILTYLKKQITKLGIPVSLDEVPAEVSNDNNLIARLPGTVK---FDTIFFCGHMDTVP 75 (361)
T ss_pred HHHeecCCCCCcHHHHHHHHHHHHHHcCCEEEEeccccccCCCceEEEEEeCCCC---CCcEEEEeeccccC
Confidence 445555556666655544432 343 333332 13589998766531 24699999999874
No 135
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=47.43 E-value=47 Score=28.02 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=37.9
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhhhccc
Q 013257 353 ATNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQLSMH 411 (447)
Q Consensus 353 ~t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~ryMH 411 (447)
+|+.-+...+++.|+++|++++.... +.+.+...-.+.-.+.+|-.+||+-
T Consensus 11 aSSs~la~km~~~a~~~gi~~~i~a~--------~~~e~~~~~~~~Dvill~PQv~~~~ 61 (99)
T cd05565 11 GTSGLLANALNKGAKERGVPLEAAAG--------AYGSHYDMIPDYDLVILAPQMASYY 61 (99)
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEEEe--------eHHHHHHhccCCCEEEEcChHHHHH
Confidence 67788999999999999999997653 1222333344667888888888864
No 136
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=42.99 E-value=2.8e+02 Score=27.97 Aligned_cols=82 Identities=10% Similarity=-0.029 Sum_probs=51.7
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcC--CCCcEEEechhhhcc-chHHhhcCHHHHHHHHHHHH
Q 013257 354 TNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASG--VGIRTVDVGAPQLSM-HSIREMCAVDDVKHSYEHFK 430 (447)
Q Consensus 354 t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~--~Gi~t~digiP~ryM-HS~~E~~~~~Di~~~~~ll~ 430 (447)
.|+.+.+.+.+.|+++||+...-....-.--=||.-|+...+ ..+|++.|+++.+.- +... -...+...+-+.+.
T Consensus 96 gd~eLA~~i~~~~~~~Gi~~~~~~~~~~~LDHGt~vPL~fl~p~~~~pvV~is~~~l~~~~~~~--~~~~~~~~lG~ai~ 173 (294)
T cd07372 96 VDVELAEACCEEGRKAGLVTKMMRNPRFRVDYGTITTLHMIRPQWDIPVVGISANNTPYYLNTK--EGLGEMDVLGKATR 173 (294)
T ss_pred CCHHHHHHHHHHHHHCCCCeeeccCCCCCCCchHHHHHHHhCCCCCCcEEEEecCccccccccc--CCHHHHHHHHHHHH
Confidence 499999999999999999998421111001125555654433 569999999865421 1111 33566666777777
Q ss_pred HHHHHhh
Q 013257 431 AFFQEFS 437 (447)
Q Consensus 431 ~f~~~~~ 437 (447)
..+++++
T Consensus 174 ~al~~~~ 180 (294)
T cd07372 174 EAIRKTG 180 (294)
T ss_pred HHHHhcC
Confidence 7776654
No 137
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=42.55 E-value=35 Score=36.26 Aligned_cols=69 Identities=19% Similarity=0.237 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHh-CCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEech--h--hhccchHHhhcCHHHHHHHHHHH
Q 013257 355 NAVTSFVFREVASK-HNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGA--P--QLSMHSIREMCAVDDVKHSYEHF 429 (447)
Q Consensus 355 ~~~~~~~l~~~a~~-~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digi--P--~ryMHS~~E~~~~~Di~~~~~ll 429 (447)
+..+.+.+.++.++ .+.+.+.... .|+|++.... +++.+|. | ...+|++.|-++++++..+++++
T Consensus 374 ~~~lv~~l~~~~~~~~g~~~~~~~~-----~ggtda~~~~-----~~i~~Gp~~pG~~~~aH~~dE~v~i~~l~~~~~i~ 443 (447)
T TIGR01887 374 DDPLVQTLMKVYEKQTGDEGTPVAI-----GGGTYARLME-----NGVAFGALFPGEEDTMHQANEYIMIDDLLLATAIY 443 (447)
T ss_pred CCHHHHHHHHHHHHHhCCCCCeeEe-----cchhhhhhCC-----CcEEeCCCCCCCCCCccCCCcceeHHHHHHHHHHH
Confidence 44566666666664 4555554432 3567655431 2455563 3 34589999999999999999998
Q ss_pred HHHH
Q 013257 430 KAFF 433 (447)
Q Consensus 430 ~~f~ 433 (447)
..++
T Consensus 444 ~~~~ 447 (447)
T TIGR01887 444 AEAI 447 (447)
T ss_pred HHhC
Confidence 8753
No 138
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=42.51 E-value=35 Score=35.25 Aligned_cols=47 Identities=17% Similarity=-0.092 Sum_probs=31.4
Q ss_pred CCceEeecc-cchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEecccc
Q 013257 224 KKEFIFSGR-LDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEV 273 (447)
Q Consensus 224 ~~~~i~~ka-lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEV 273 (447)
.++++.|++ .|++.++++++.|++.+.... . .....+++++++.||.
T Consensus 97 ~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~--~-~~~~~v~~~~~~dEE~ 144 (395)
T TIGR03526 97 DEEIIYGRGASDQEGGIASMVYAGKIIKDLG--L-LDDYTLLVTGTVQEED 144 (395)
T ss_pred ECCEEEecCccccchhHHHHHHHHHHHHHcC--C-CCCceEEEEEeccccc
Confidence 355777755 799999999998876654211 0 1233466778888994
No 139
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=41.94 E-value=32 Score=35.51 Aligned_cols=47 Identities=17% Similarity=-0.107 Sum_probs=31.9
Q ss_pred CceEeec-ccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccC
Q 013257 225 KEFIFSG-RLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVG 274 (447)
Q Consensus 225 ~~~i~~k-alDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVG 274 (447)
++++.|+ +.|++.++++++.|++.+.+.. . .....+++++++.||.|
T Consensus 98 ~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g--~-~~~~~i~~~~~~dEE~~ 145 (395)
T TIGR03320 98 EEIIYGRGASDQEGGIASMVYAGKIIKDLG--L-LDDYTLLVTGTVQEEDC 145 (395)
T ss_pred CCEEEecCccCccchHHHHHHHHHHHHHcC--C-CCCceEEEEeccccccc
Confidence 4567675 4899999999998887664311 0 12335667788889974
No 140
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=41.34 E-value=28 Score=39.84 Aligned_cols=57 Identities=18% Similarity=0.018 Sum_probs=42.7
Q ss_pred ecccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCcccccccCC--cchhhH
Q 013257 230 SGRLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQGAGS--PAMLDA 289 (447)
Q Consensus 230 ~kalDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~gA~~--~~~pd~ 289 (447)
.+|=||-.||++++|+++-..+.+.. ....+++.|+..||-++.|+.+-.. ++..++
T Consensus 159 ~gAtDDg~~va~mLe~lRv~s~~~~~---l~~~vVFLfNgaEE~~L~gsH~FItQH~w~~~~ 217 (834)
T KOG2194|consen 159 PGATDDGSGVASMLEALRVLSKSDKL---LTHSVVFLFNGAEESGLLGSHAFITQHPWSKNI 217 (834)
T ss_pred CCCCcchhHHHHHHHHHHHhhcCCCc---ccccEEEEecCcccchhhhcccceecChhhhhh
Confidence 56789999999999999876542111 2456889999999999999988655 444443
No 141
>PLN02693 IAA-amino acid hydrolase
Probab=40.26 E-value=56 Score=34.67 Aligned_cols=58 Identities=17% Similarity=0.121 Sum_probs=39.5
Q ss_pred hhchhhhcCCCcceeccccceE--Eee---eEEEEccCCeEEEEEeCCcccCCCCeEEEEeecCCCc
Q 013257 3 RRGVCKQWGINRFQREKIGNWK--LAR---DTFFTRNHSTIIAFAVGKKYVAGNGFHVVGAHTDSPC 64 (447)
Q Consensus 3 ~~~~~~~~~~sG~E~~~~~~w~--l~~---~~~~d~~~gnlia~~~g~~~~~~~~~vmi~AH~De~g 64 (447)
||+|......|+-|.+..+.+. |+. ++.......|++|.. +++. .+.+++.||||-+-
T Consensus 53 r~~lh~~PE~s~~E~~ta~~i~~~L~~~G~~~~~~~~~~~via~~-g~~~---g~~i~l~~h~DaVp 115 (437)
T PLN02693 53 RRKIHENPELGYEEFETSKLIRSELDLIGIKYRYPVAITGIIGYI-GTGE---PPFVALRADMDALP 115 (437)
T ss_pred HHHHHhCCCCCCchHHHHHHHHHHHHHCCCeeEecCCCcEEEEEE-CCCC---CCEEEEEeecCCCc
Confidence 6778888888888887777774 555 333222236899976 4321 24699999999985
No 142
>COG3655 Predicted transcriptional regulator [Transcription]
Probab=38.69 E-value=24 Score=28.20 Aligned_cols=23 Identities=26% Similarity=0.622 Sum_probs=18.4
Q ss_pred HHHHHHHHcCCCCCCeeeeeeee
Q 013257 190 LLQMIASQIGCRPDDICDFELQA 212 (447)
Q Consensus 190 l~~~~a~~~gV~~gdiv~~d~~~ 212 (447)
-++.+++.+.++|||++.|+...
T Consensus 47 tL~~iC~~LeCqpgDiley~~d~ 69 (73)
T COG3655 47 TLEKICKALECQPGDILEYVPDS 69 (73)
T ss_pred HHHHHHHHcCCChhheeEEecCC
Confidence 34458999999999999987544
No 143
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=38.58 E-value=16 Score=37.67 Aligned_cols=57 Identities=9% Similarity=0.036 Sum_probs=35.2
Q ss_pred hchhhhcCCCcceeccccceE--Eee----eEEEEccCCeEEEEEeCCcccCCCCeEEEEeecCCCc
Q 013257 4 RGVCKQWGINRFQREKIGNWK--LAR----DTFFTRNHSTIIAFAVGKKYVAGNGFHVVGAHTDSPC 64 (447)
Q Consensus 4 ~~~~~~~~~sG~E~~~~~~w~--l~~----~~~~d~~~gnlia~~~g~~~~~~~~~vmi~AH~De~g 64 (447)
++|++...+||-|.+..+... ++. .+.++..+.||+|.. +... .+.+++.+|||-+-
T Consensus 3 ~~Lv~ipS~s~~e~~~~~~i~~~l~~~g~~~~~~~~~~~nvva~~-~~~~---~~~l~l~gH~DtVp 65 (373)
T TIGR01900 3 QQIMDIFSPSDHEGPIADEIEAALNNLELEGLEVFRFGDNVLART-DFGK---ASRVILAGHIDTVP 65 (373)
T ss_pred HHHhCCCCCCchHHHHHHHHHHHHhhccccCceEEEECCEEEEec-CCCC---CCeEEEeCcccccc
Confidence 567777777887776666552 332 133333334899875 3221 23599999999874
No 144
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=37.36 E-value=4.1e+02 Score=26.13 Aligned_cols=83 Identities=13% Similarity=0.032 Sum_probs=52.6
Q ss_pred EEEEcCCCccccCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhc--CCCCcEEEechhhhccchHHhhcCHH
Q 013257 343 VIKHNANQRYATNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILAS--GVGIRTVDVGAPQLSMHSIREMCAVD 420 (447)
Q Consensus 343 ~ik~~~~~~~~t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a--~~Gi~t~digiP~ryMHS~~E~~~~~ 420 (447)
.+++...+ |+++...+.+.++++||+......+.-.--=||.-|+... ...+|++.+++++. + .+..
T Consensus 78 ~~~y~~~g----~~eLA~~i~~~~~~~gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~vs~~~~-~------~~~~ 146 (268)
T cd07371 78 RLDYSINV----DVELAEACVEEGRKAGLVTRMMRYPRFPIDTGTITALTLMRPGTDIPPVVISANNL-Y------LSGE 146 (268)
T ss_pred eeeecCCC----CHHHHHHHHHHHHHCCCcEEEecCCCCCCCchhHHHHHHhcCCCCCCeEEEEecCc-C------CCHH
Confidence 35554444 9999999999999999998752211100012455565443 46789999998876 2 3444
Q ss_pred HHHHHHHHHHHHHHHh
Q 013257 421 DVKHSYEHFKAFFQEF 436 (447)
Q Consensus 421 Di~~~~~ll~~f~~~~ 436 (447)
....+-+.|.+.+++.
T Consensus 147 ~~~~lG~al~~~l~~~ 162 (268)
T cd07371 147 ETEGEMDLAGKATRDA 162 (268)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 5556666666555544
No 145
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=36.83 E-value=31 Score=34.12 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=39.7
Q ss_pred CCC-hHHHHhcCCCCcEEEechhhhccchHHhhcCHHHHHHHHHHHHHHHHHhhh
Q 013257 385 GST-IGPILASGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQEFSE 438 (447)
Q Consensus 385 G~T-~g~i~~a~~Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f~~~~~~ 438 (447)
.|| .|++..+-.|||++.+|.-.++-+..+. .|++.+.++..++++.+-.
T Consensus 104 SGTVaaA~Ea~~~GipsIA~S~~~~~~~~~~~----~~~e~A~~~~~~lv~~l~~ 154 (252)
T COG0496 104 SGTVAAAMEAALLGIPAIAISLAYREAFGKQD----VDFETAAKVARALVEALLA 154 (252)
T ss_pred eehHHHHHHHHHcCccceeeeehhcccccccc----ccHHHHHHHHHHHHHHHHh
Confidence 478 5788999999999999988887665433 5888888888888877644
No 146
>cd07370 HPCD The Class III extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase, catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. HPCD is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.
Probab=36.68 E-value=3.4e+02 Score=26.85 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=47.1
Q ss_pred cccCHHHHHHHHHHHHhCCCCEEEEEeecCCCCC---CChHHHHhcCC--CCcEEEechhhhccchHHhhcCHHHHHHHH
Q 013257 352 YATNAVTSFVFREVASKHNLPVQDFVVRNDMACG---STIGPILASGV--GIRTVDVGAPQLSMHSIREMCAVDDVKHSY 426 (447)
Q Consensus 352 ~~t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G---~T~g~i~~a~~--Gi~t~digiP~ryMHS~~E~~~~~Di~~~~ 426 (447)
+-.|+++.+.+.+.+.+.+++.+.... ...+ |+.-|.+..+. .+|++.|+++.. .+......+-
T Consensus 90 ~~gd~ela~~i~~~~~~~g~~~~~~~~---~~~~lDhg~~vPL~~l~p~~~~pvV~is~~~~--------~~~~~~~~lG 158 (280)
T cd07370 90 YAGDPELAHLIAEEATEHGVKTLAHED---PSLPLEYGTLVPMRFMNEDDHFKVVSVAVWCT--------HDIEESRRLG 158 (280)
T ss_pred CCCCHHHHHHHHHHHHHCCCCeeeecC---CCCCCCeeHhhHHHHhCCCCCceEEEEeecCC--------CCHHHHHHHH
Confidence 344899999999999999999884211 1122 34445565544 899999999765 2344445555
Q ss_pred HHHHHHHHH
Q 013257 427 EHFKAFFQE 435 (447)
Q Consensus 427 ~ll~~f~~~ 435 (447)
+.|..++++
T Consensus 159 ~al~~~~~~ 167 (280)
T cd07370 159 EAIRRAIAA 167 (280)
T ss_pred HHHHHHHHh
Confidence 555555544
No 147
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=36.37 E-value=39 Score=34.42 Aligned_cols=48 Identities=15% Similarity=-0.022 Sum_probs=27.4
Q ss_pred ceEeecccchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCccccc
Q 013257 226 EFIFSGRLDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQ 279 (447)
Q Consensus 226 ~~i~~kalDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~ 279 (447)
+++.|..-| .++.+++.+++.+.... ...+..+.++|++.||+| .|+.
T Consensus 84 g~l~g~G~~--~~~a~~l~a~~~l~~~~---~~~~~~i~~~~~~dEE~~-~G~~ 131 (363)
T TIGR01891 84 GVMHACGHD--LHTAILLGTAKLLKKLA---DLLEGTVRLIFQPAEEGG-GGAT 131 (363)
T ss_pred CceecCcCH--HHHHHHHHHHHHHHhch---hhCCceEEEEEeecCcCc-chHH
Confidence 355565554 45555666555443210 012456889999999985 4444
No 148
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=35.94 E-value=29 Score=36.85 Aligned_cols=45 Identities=18% Similarity=0.082 Sum_probs=32.3
Q ss_pred cchhhhHHHHHHHHHhccCCCCCCCCCCceEEEEEEeccccCccccc
Q 013257 233 LDNLCMSFCSLKALIDSTSSEGDLEDEIGVRMVALFDHEEVGSDSAQ 279 (447)
Q Consensus 233 lDnr~g~~~~leal~~~~~~~~~~~~~~~~~~~~~t~qEEVGsrga~ 279 (447)
.||++|...+..+|.-+.....++ ....+.++++..||+|.||+.
T Consensus 143 aD~kAGia~i~~al~~~~~~~~~i--~h~~i~~g~s~~Ee~g~rg~~ 187 (414)
T COG2195 143 ADDKAGIAEIMTALSVLREKHPEI--PHGGIRGGFSPDEEIGGRGAA 187 (414)
T ss_pred CcchhHHHHHHHHHHHHhhcCccc--cccCeEEEecchHHhhhhhhh
Confidence 688899999988876654211012 345678899999999998665
No 149
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=34.69 E-value=3.4e+02 Score=27.10 Aligned_cols=122 Identities=3% Similarity=-0.098 Sum_probs=73.5
Q ss_pred HhhhcceEEEEecCCCCCCCCCCCCCCCCCCccCCccEEEEcC-----C--CccccCHHHHHHHHHHHHhCCCCEEEEEe
Q 013257 306 KAIQRSFLVSADMAHALHPNYMDKHEDNHQPKLHGGLVIKHNA-----N--QRYATNAVTSFVFREVASKHNLPVQDFVV 378 (447)
Q Consensus 306 ~~~~~s~aIs~Dv~ha~~P~~~~~~~~~~~~~LG~Gp~ik~~~-----~--~~~~t~~~~~~~l~~~a~~~~Ip~Q~~~~ 378 (447)
+..+||.+|.+--.|.. +|.... .-...+|.|..+.-+. . ..+-.|+.+.+.|.+.+.+.||+......
T Consensus 45 ~~~~pD~vVvi~~dH~~--~f~~~~--~P~f~i~~~~~~~~~~~~~g~~~~~~~~g~~~LA~~i~~~~~~~g~~~~~~~~ 120 (277)
T cd07364 45 KKNKPDVAIIVYNDHAS--AFDLDI--IPTFAIGTAEEFQPADEGYGPRPVPDVQGHPDLAWHIAQSLILDDFDMTIVNE 120 (277)
T ss_pred HHhCCCEEEEEcCchHH--hhcccC--CCceEEeeccccccCccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCC
Confidence 45799999988656653 232211 1122345555444111 1 12455899999999999999999875332
Q ss_pred ecCCCCCCChHHHHhcCC---C--CcEEEechhhhccchHHhhcCHHHHHHHHHHHHHHHHHhh
Q 013257 379 RNDMACGSTIGPILASGV---G--IRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQEFS 437 (447)
Q Consensus 379 r~d~~~G~T~g~i~~a~~---G--i~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f~~~~~ 437 (447)
+. --=||.-|+...+. + +|++-+++++.+.- +.+.+....+-+.|..++++++
T Consensus 121 ~~--lDHG~~vPL~~l~p~~~~~p~pVV~vsvn~~~~p----~~~~~~~~~lG~al~~~i~~~~ 178 (277)
T cd07364 121 MD--VDHGLTVPLSIMYGQPEAWPCKVIPLCVNVVQYP----QPTGKRCFALGKAIRRAVESYD 178 (277)
T ss_pred CC--CCcchhhhHHHhCCccccCCCCeEEEEeccCCCC----CCCHHHHHHHHHHHHHHHHhcC
Confidence 10 01144445443322 3 67888887665431 4457788888888888888774
No 150
>PLN02280 IAA-amino acid hydrolase
Probab=31.88 E-value=32 Score=37.09 Aligned_cols=59 Identities=19% Similarity=0.116 Sum_probs=36.1
Q ss_pred hhchhhhcCCCcceeccccceE--Eee---eEEEEccCCeEEEEEeCCcccCCCCeEEEEeecCCCce
Q 013257 3 RRGVCKQWGINRFQREKIGNWK--LAR---DTFFTRNHSTIIAFAVGKKYVAGNGFHVVGAHTDSPCL 65 (447)
Q Consensus 3 ~~~~~~~~~~sG~E~~~~~~w~--l~~---~~~~d~~~gnlia~~~g~~~~~~~~~vmi~AH~De~g~ 65 (447)
||.+......++-|.+..+.+. |+. ++.......|++|.. |++. .+.+++-||||-+-.
T Consensus 103 ~r~lh~~PEls~~E~~t~~~i~~~L~~~G~~~~~~~~~~~vva~~-g~~~---~~~I~l~gh~DaVP~ 166 (478)
T PLN02280 103 RRKIHENPELAFEEYKTSELVRSELDRMGIMYRYPLAKTGIRAWI-GTGG---PPFVAVRADMDALPI 166 (478)
T ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHHHCCCeEEecCCCCEEEEEE-CCCC---CCEEEEEEecCCCcc
Confidence 4555555555666666666553 544 444333345899986 5431 246999999998853
No 151
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=27.77 E-value=79 Score=31.26 Aligned_cols=46 Identities=11% Similarity=0.045 Sum_probs=32.5
Q ss_pred CCCCh-HHHHhcCCCCcEEEechhhhccchHHhhcCHHHHHHHHHHHHHHHHHh
Q 013257 384 CGSTI-GPILASGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQEF 436 (447)
Q Consensus 384 ~G~T~-g~i~~a~~Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f~~~~ 436 (447)
..||. +++..+..|||++.+|....+.. ..|++.+.+++..+++.+
T Consensus 107 ySGTVgAA~ea~~~GiPsiA~S~~~~~~~-------~~~~~~a~~~~~~lv~~l 153 (253)
T PRK13933 107 YSGTVSAAIEGAIYKVPSIAVSADVKKGK-------DENYKIAAKYALEVLNIL 153 (253)
T ss_pred cchhHHHHHHHHHcCCCeEEEEeccCCCC-------cccHHHHHHHHHHHHHHH
Confidence 46785 67888999999999998543221 115777777777777655
No 152
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=26.48 E-value=67 Score=26.78 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHhCCCCEEEE
Q 013257 355 NAVTSFVFREVASKHNLPVQDF 376 (447)
Q Consensus 355 ~~~~~~~l~~~a~~~~Ip~Q~~ 376 (447)
...+.+.+.+.|++++||+|..
T Consensus 30 ~G~iAe~II~~Ake~~Vpi~ed 51 (92)
T COG2257 30 KGEIAEKIIEKAKEHGVPIQED 51 (92)
T ss_pred chHHHHHHHHHHHHcCCCcccC
Confidence 4578999999999999999974
No 153
>PRK08596 acetylornithine deacetylase; Validated
Probab=25.44 E-value=49 Score=34.59 Aligned_cols=28 Identities=11% Similarity=0.227 Sum_probs=19.0
Q ss_pred CCeEEEEEeCCcccCCCCeEEEEeecCCC
Q 013257 35 HSTIIAFAVGKKYVAGNGFHVVGAHTDSP 63 (447)
Q Consensus 35 ~gnlia~~~g~~~~~~~~~vmi~AH~De~ 63 (447)
..|++|...|+... ..+.+++.+|||-+
T Consensus 62 ~~nvia~~~g~~~~-~~~~lll~~H~DtV 89 (421)
T PRK08596 62 DPNVVGVKKGTESD-AYKSLIINGHMDVA 89 (421)
T ss_pred CceEEEEecCCCCC-CCcEEEEecccccc
Confidence 36999987664321 11249999999975
No 154
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=24.98 E-value=1.7e+02 Score=23.63 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEE
Q 013257 355 NAVTSFVFREVASKHNLPVQDF 376 (447)
Q Consensus 355 ~~~~~~~l~~~a~~~~Ip~Q~~ 376 (447)
++.+...+..+|++++||+.++
T Consensus 38 ~~~~~~~i~~~c~~~~Vp~~~~ 59 (82)
T PRK13602 38 DPRLTEKVEALANEKGVPVSKV 59 (82)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE
Confidence 5679999999999999999765
No 155
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=24.66 E-value=3.3e+02 Score=22.11 Aligned_cols=20 Identities=5% Similarity=0.197 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHhCCCCEE
Q 013257 355 NAVTSFVFREVASKHNLPVQ 374 (447)
Q Consensus 355 ~~~~~~~l~~~a~~~~Ip~Q 374 (447)
++.+...+.+.|+.++||+.
T Consensus 35 ~~~~~k~i~~~c~~~~Vpv~ 54 (82)
T PRK13601 35 EEHVTKKIKELCEEKSIKIV 54 (82)
T ss_pred CHHHHHHHHHHHHhCCCCEE
Confidence 57899999999999999994
No 156
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=23.04 E-value=6.5e+02 Score=27.44 Aligned_cols=95 Identities=17% Similarity=0.163 Sum_probs=56.7
Q ss_pred cEEEE-cCCCccccCHHHHHHHHHHHHhCCCCE--EEEEe--ecCC------------------CCCCChHHH-HhcCCC
Q 013257 342 LVIKH-NANQRYATNAVTSFVFREVASKHNLPV--QDFVV--RNDM------------------ACGSTIGPI-LASGVG 397 (447)
Q Consensus 342 p~ik~-~~~~~~~t~~~~~~~l~~~a~~~~Ip~--Q~~~~--r~d~------------------~~G~T~g~i-~~a~~G 397 (447)
+-|++ +.|+ -.+|-.+...+..+|++.||+. |.... +... .-|.--|+- ...+.+
T Consensus 114 v~i~~eG~NG-qLPNLDL~N~~~~i~~~~gi~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~a~g~p~g~H~~f~~y~ 192 (504)
T PF04114_consen 114 VEIKYEGLNG-QLPNLDLVNTVVRIAEKEGIPMGVSLHLQPSDWHSNSDYESRLKTLLRGMLNQALGGPTGPHGAFLRYR 192 (504)
T ss_pred EEEEEecCCC-CCCCchHHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHHHHHHhccCCCCCCchhhhhcC
Confidence 66666 4454 7789999999999999999663 32111 0000 001111111 234566
Q ss_pred CcEEEechhhhccchHHhhcCHHHHHHHHHHHHHHHHHhhhhhccc
Q 013257 398 IRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQEFSELDAKI 443 (447)
Q Consensus 398 i~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f~~~~~~~~~~~ 443 (447)
|.++.+ |..++..+ +..|+.+.-++++..++.+++++.+|
T Consensus 193 I~aiTl----~~~~~~~~--~~~~~~~~gr~~E~~~RslNNLlE~~ 232 (504)
T PF04114_consen 193 IDAITL----RGVKSTGP--GPHDFTAFGRILEGIFRSLNNLLERF 232 (504)
T ss_pred ccEEEE----ecccCCCC--CCcCHHHHHHHHHHHHHHHHHHHHhH
Confidence 777777 22222211 33578888899999999988877654
No 157
>PRK10602 murein peptide amidase A; Provisional
Probab=22.54 E-value=4.9e+02 Score=25.44 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhhhccchHHhhcCHHHHHHHHHHHHHHHH
Q 013257 355 NAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQ 434 (447)
Q Consensus 355 ~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f~~ 434 (447)
++......+.+|+..+.|+=.... .+.+|+.+... ...|||++.+=.|. +.+..+++...+-+..+++
T Consensus 165 ~~~~~~~~~~la~af~~~~~~~~~---y~~~Gs~~~~a-~~~giP~it~El~~--------~~~~~~v~~~~~~~~~~l~ 232 (237)
T PRK10602 165 DPRHSELGEWLAQAFELPLVTSVG---YETPGSFGSWC-ADLNLHCITAELPP--------ISADEASEKYLFAMANLLR 232 (237)
T ss_pred CccchHHHHHHHHHhCCCeEeecC---CCCCCcHHHHH-HHcCCcEEEEecCC--------cCcHHHHHHHHHHHHHHHh
Confidence 455666777888888888554332 12344443332 25799999998885 5666677777776666666
Q ss_pred Hh
Q 013257 435 EF 436 (447)
Q Consensus 435 ~~ 436 (447)
..
T Consensus 233 ~~ 234 (237)
T PRK10602 233 WH 234 (237)
T ss_pred cc
Confidence 54
No 158
>PF09652 Cas_VVA1548: Putative CRISPR-associated protein (Cas_VVA1548); InterPro: IPR013443 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPR repeats. In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas genes.
Probab=22.18 E-value=19 Score=30.12 Aligned_cols=29 Identities=34% Similarity=0.408 Sum_probs=21.1
Q ss_pred EEecCCCcccccccccCCCCCCCccceeeeEe
Q 013257 129 MRIPTLAIHLDRNVNSDGFKVNTQSHLVPILA 160 (447)
Q Consensus 129 gvI~~laiHl~~~~~~~~~~~~~~~~l~idiG 160 (447)
-|||+||+||..+..+++.++ -+|..++-
T Consensus 37 ~ViGtLPvhLaA~vc~kGa~y---~~L~l~lp 65 (93)
T PF09652_consen 37 VVIGTLPVHLAAEVCEKGARY---YHLSLDLP 65 (93)
T ss_pred EEEEeCcHHHHHHHHhCCcEE---EEEEccCC
Confidence 488999999998876566665 56655543
No 159
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=22.14 E-value=2.9e+02 Score=27.00 Aligned_cols=69 Identities=10% Similarity=0.005 Sum_probs=45.4
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhc--CCCCcEEEechhhhccchHHhhcCHHHHHHHHHHHHH
Q 013257 354 TNAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILAS--GVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKA 431 (447)
Q Consensus 354 t~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a--~~Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~ 431 (447)
.|+++.+.+.+.++++||+.+....+. --=|+.-|+... ...+|++.|+++..+ +......+-+.|..
T Consensus 78 g~~eLa~~i~~~l~~~gi~~~~~~~~~--lDHG~~vPL~~~~p~~~iPvV~isi~~~~--------~~~~~~~lG~aL~~ 147 (253)
T cd07363 78 GSPELAERVAELLKAAGIPARLDPERG--LDHGAWVPLKLMYPDADIPVVQLSLPASL--------DPAEHYALGRALAP 147 (253)
T ss_pred CCHHHHHHHHHHHHhcCCCccccCCcC--CcccHHHHHHHHcCCCCCcEEEEEecCCC--------CHHHHHHHHHHHHh
Confidence 499999999999999999998632110 012444555433 457999999998874 33445555555544
Q ss_pred H
Q 013257 432 F 432 (447)
Q Consensus 432 f 432 (447)
+
T Consensus 148 l 148 (253)
T cd07363 148 L 148 (253)
T ss_pred h
Confidence 3
No 160
>COG5304 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.74 E-value=35 Score=28.25 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEE
Q 013257 355 NAVTSFVFREVASKHNLPVQDFV 377 (447)
Q Consensus 355 ~~~~~~~l~~~a~~~~Ip~Q~~~ 377 (447)
.......++.-|...|+|||.+.
T Consensus 59 ss~dLeaIK~kaSa~GlpYQtyI 81 (92)
T COG5304 59 SSSDLEAIKQKASAEGLPYQTYI 81 (92)
T ss_pred CHHHHHHHHHHHhhcCCcHHHHH
Confidence 34577889999999999999875
No 161
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=21.58 E-value=4e+02 Score=22.16 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHhCCCCEEEE
Q 013257 355 NAVTSFVFREVASKHNLPVQDF 376 (447)
Q Consensus 355 ~~~~~~~l~~~a~~~~Ip~Q~~ 376 (447)
.+.+...++..|+.++||+-.+
T Consensus 43 ~~~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 43 PKDIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE
Confidence 6789999999999999998554
No 162
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=21.27 E-value=1e+02 Score=30.61 Aligned_cols=44 Identities=9% Similarity=0.077 Sum_probs=32.0
Q ss_pred CCCh-HHHHhcCCCCcEEEechhhhccchHHhhcCHHHHHHHHHHHHHHHHHhh
Q 013257 385 GSTI-GPILASGVGIRTVDVGAPQLSMHSIREMCAVDDVKHSYEHFKAFFQEFS 437 (447)
Q Consensus 385 G~T~-g~i~~a~~Gi~t~digiP~ryMHS~~E~~~~~Di~~~~~ll~~f~~~~~ 437 (447)
.||. +++..+..|||++.+|... +- -.|++.+.+++..+++.+-
T Consensus 112 SGTVgAA~Ea~~~GiPsIA~S~~~-~~--------~~~~~~aa~~~~~l~~~l~ 156 (257)
T PRK13932 112 SGTVAAALEGAIQGIPSLAFSLTT-YE--------NADFTYAGKFARKLARKVL 156 (257)
T ss_pred chhHHHHHHHHHcCCCeEEEEccc-CC--------cCCHHHHHHHHHHHHHHHH
Confidence 5785 6778899999999999743 11 1267888888888777553
No 163
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=21.24 E-value=84 Score=33.73 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=0.0
Q ss_pred CeEEEEEeCCcccCCCCeEEEEeecCCCce
Q 013257 36 STIIAFAVGKKYVAGNGFHVVGAHTDSPCL 65 (447)
Q Consensus 36 gnlia~~~g~~~~~~~~~vmi~AH~De~g~ 65 (447)
+|++|+.+|+.. +.-|++.+|+|-++.
T Consensus 66 ~nv~AlVrg~~~---k~tvvl~gH~DtV~i 92 (553)
T COG4187 66 RNVFALVRGGTS---KRTVVLHGHFDTVSI 92 (553)
T ss_pred ceeEEEEecCCC---CceEEEeeccceeec
No 164
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=20.79 E-value=2.7e+02 Score=22.98 Aligned_cols=47 Identities=11% Similarity=-0.019 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEeecCCCCCCChHHHHhcCCCCcEEEechhhhc
Q 013257 355 NAVTSFVFREVASKHNLPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQLS 409 (447)
Q Consensus 355 ~~~~~~~l~~~a~~~~Ip~Q~~~~r~d~~~G~T~g~i~~a~~Gi~t~digiP~ry 409 (447)
..-+...+++.|+++|++++.... + .+.+.........+.++-.++|
T Consensus 16 SS~l~~k~~~~~~~~gi~~~v~a~------~--~~~~~~~~~~~Dvill~pqi~~ 62 (95)
T TIGR00853 16 TSLLVNKMNKAAEEYGVPVKIAAG------S--YGAAGEKLDDADVVLLAPQVAY 62 (95)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEe------c--HHHHHhhcCCCCEEEECchHHH
Confidence 345779999999999999997663 1 1222112233456666666655
Done!