Query 013259
Match_columns 447
No_of_seqs 445 out of 3161
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 02:02:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013259.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013259hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03144 Carbon catabolite rep 100.0 2E-31 4.4E-36 270.3 21.2 198 27-234 252-478 (606)
2 KOG2338 Transcriptional effect 100.0 2.4E-29 5.2E-34 242.2 19.6 376 29-439 116-494 (495)
3 PRK11756 exonuclease III; Prov 99.9 1.7E-24 3.6E-29 205.3 15.3 204 30-277 1-237 (268)
4 TIGR03395 sphingomy sphingomye 99.9 1.1E-23 2.4E-28 199.5 17.7 218 30-277 1-245 (283)
5 COG0708 XthA Exonuclease III [ 99.9 1.1E-23 2.4E-28 191.7 12.3 205 30-280 1-233 (261)
6 COG5239 CCR4 mRNA deadenylase, 99.9 1.5E-21 3.2E-26 181.0 13.0 198 29-234 30-265 (378)
7 KOG3873 Sphingomyelinase famil 99.8 1.1E-21 2.3E-26 181.2 7.4 224 28-277 7-258 (422)
8 COG3568 ElsH Metal-dependent h 99.8 4.4E-21 9.5E-26 174.3 11.3 206 29-278 9-230 (259)
9 PRK13911 exodeoxyribonuclease 99.8 1.6E-20 3.4E-25 174.7 14.5 200 30-278 1-225 (250)
10 TIGR00195 exoDNase_III exodeox 99.8 2.1E-20 4.5E-25 175.9 14.9 200 30-277 1-225 (254)
11 TIGR00633 xth exodeoxyribonucl 99.8 4.1E-20 8.9E-25 174.0 14.3 201 30-276 1-228 (255)
12 PRK05421 hypothetical protein; 99.8 1.4E-18 3.1E-23 163.7 14.3 154 27-226 41-197 (263)
13 PTZ00297 pantothenate kinase; 99.8 2E-17 4.4E-22 184.8 18.8 220 28-274 9-278 (1452)
14 smart00476 DNaseIc deoxyribonu 99.7 1.6E-16 3.4E-21 148.6 18.9 169 28-225 16-190 (276)
15 PF03372 Exo_endo_phos: Endonu 99.7 8.2E-17 1.8E-21 149.4 12.3 150 64-226 17-171 (249)
16 KOG0620 Glucose-repressible al 99.7 1.2E-16 2.5E-21 154.5 10.5 202 25-236 15-246 (361)
17 KOG2756 Predicted Mg2+-depende 99.6 4.3E-15 9.4E-20 132.3 12.9 207 28-274 98-309 (349)
18 PRK15251 cytolethal distending 99.5 4.5E-14 9.8E-19 129.7 11.5 197 28-280 23-241 (271)
19 COG2374 Predicted extracellula 99.4 5.1E-12 1.1E-16 128.1 13.8 255 24-287 458-744 (798)
20 cd05022 S-100A13 S-100A13: S-1 99.3 1.9E-12 4.2E-17 99.7 6.7 68 300-373 4-74 (89)
21 COG3021 Uncharacterized protei 99.3 1.4E-11 3E-16 114.4 10.3 197 26-275 85-282 (309)
22 COG5126 FRQ1 Ca2+-binding prot 99.3 1.3E-11 2.8E-16 104.6 9.2 80 289-374 75-156 (160)
23 cd05027 S-100B S-100B: S-100B 99.2 1.9E-11 4.2E-16 94.4 7.3 67 300-372 4-77 (88)
24 PF13499 EF-hand_7: EF-hand do 99.2 2E-11 4.3E-16 89.5 6.9 61 306-372 2-66 (66)
25 KOG0027 Calmodulin and related 99.2 8.5E-11 1.8E-15 101.3 9.0 65 303-373 84-148 (151)
26 cd05026 S-100Z S-100Z: S-100Z 99.1 1.9E-10 4.1E-15 90.1 7.3 70 300-372 6-79 (93)
27 cd05029 S-100A6 S-100A6: S-100 99.1 2.3E-10 5E-15 88.4 6.7 67 300-372 6-77 (88)
28 COG5126 FRQ1 Ca2+-binding prot 99.1 1.1E-10 2.5E-15 98.9 4.9 121 300-434 16-147 (160)
29 cd05025 S-100A1 S-100A1: S-100 99.1 4.4E-10 9.6E-15 88.1 7.3 71 300-372 5-78 (92)
30 cd05031 S-100A10_like S-100A10 99.0 5.6E-10 1.2E-14 87.9 7.2 68 301-374 5-79 (94)
31 KOG0037 Ca2+-binding protein, 99.0 1.5E-10 3.3E-15 101.1 4.1 101 303-409 56-161 (221)
32 KOG0027 Calmodulin and related 99.0 5.9E-10 1.3E-14 96.0 7.6 119 301-432 5-138 (151)
33 smart00027 EH Eps15 homology d 99.0 7.5E-10 1.6E-14 87.5 7.3 65 301-373 7-71 (96)
34 cd00052 EH Eps15 homology doma 99.0 7.7E-10 1.7E-14 81.1 6.2 59 307-373 2-60 (67)
35 KOG0028 Ca2+-binding protein ( 99.0 2.4E-09 5.1E-14 88.8 8.5 78 290-373 90-169 (172)
36 cd05023 S-100A11 S-100A11: S-1 99.0 2.1E-09 4.6E-14 83.2 7.4 74 300-373 5-79 (89)
37 cd00213 S-100 S-100: S-100 dom 98.9 2.6E-09 5.7E-14 83.0 6.7 71 301-373 5-78 (88)
38 KOG0041 Predicted Ca2+-binding 98.9 1.9E-09 4.1E-14 92.4 5.8 82 290-378 85-166 (244)
39 PF13833 EF-hand_8: EF-hand do 98.9 3.8E-09 8.3E-14 73.9 6.4 49 320-373 3-52 (54)
40 PTZ00183 centrin; Provisional 98.8 4.4E-09 9.5E-14 91.2 4.8 120 301-433 14-144 (158)
41 cd00051 EFh EF-hand, calcium b 98.8 4E-08 8.7E-13 70.1 7.8 61 306-372 2-62 (63)
42 PTZ00184 calmodulin; Provision 98.8 6.8E-09 1.5E-13 88.9 4.1 121 301-434 8-139 (149)
43 cd05030 calgranulins Calgranul 98.7 3.4E-08 7.4E-13 76.5 6.7 68 300-373 4-78 (88)
44 KOG0028 Ca2+-binding protein ( 98.7 3.8E-08 8.1E-13 81.8 7.0 68 301-374 30-97 (172)
45 PF14658 EF-hand_9: EF-hand do 98.7 5.5E-08 1.2E-12 69.2 6.8 60 308-373 2-63 (66)
46 cd00252 SPARC_EC SPARC_EC; ext 98.7 4.3E-08 9.4E-13 79.5 6.7 62 301-372 45-106 (116)
47 KOG0031 Myosin regulatory ligh 98.7 1.1E-07 2.4E-12 78.4 8.7 94 267-373 69-164 (171)
48 PTZ00184 calmodulin; Provision 98.7 1.1E-07 2.5E-12 81.2 8.7 65 303-373 83-147 (149)
49 KOG0037 Ca2+-binding protein, 98.6 6.8E-08 1.5E-12 84.7 6.7 66 302-373 122-187 (221)
50 KOG0030 Myosin essential light 98.6 1.2E-07 2.6E-12 76.8 7.6 79 289-374 69-151 (152)
51 PTZ00183 centrin; Provisional 98.6 1.7E-07 3.7E-12 81.1 9.3 66 303-374 89-154 (158)
52 KOG0036 Predicted mitochondria 98.6 3.2E-08 6.8E-13 94.2 3.9 126 301-440 11-141 (463)
53 KOG0031 Myosin regulatory ligh 98.6 1.5E-07 3.2E-12 77.7 7.1 100 290-402 21-131 (171)
54 KOG0030 Myosin essential light 98.6 5.9E-08 1.3E-12 78.6 4.4 96 301-404 8-105 (152)
55 KOG0034 Ca2+/calmodulin-depend 98.6 2.1E-07 4.6E-12 81.9 8.2 67 304-375 104-176 (187)
56 smart00128 IPPc Inositol polyp 98.5 6.7E-07 1.5E-11 86.2 10.0 61 163-225 133-195 (310)
57 cd05024 S-100A10 S-100A10: A s 98.4 1E-06 2.2E-11 67.4 7.4 69 300-372 4-74 (91)
58 KOG0036 Predicted mitochondria 98.3 3E-06 6.5E-11 81.0 8.3 74 294-373 72-145 (463)
59 KOG0377 Protein serine/threoni 98.2 3.9E-06 8.5E-11 80.5 8.7 69 302-372 545-613 (631)
60 PF00036 EF-hand_1: EF hand; 98.2 1.7E-06 3.6E-11 51.6 3.7 26 347-372 1-26 (29)
61 PF00036 EF-hand_1: EF hand; 98.2 1.3E-06 2.8E-11 52.0 3.3 29 305-334 1-29 (29)
62 KOG0038 Ca2+-binding kinase in 98.1 1.7E-05 3.6E-10 64.9 7.8 81 290-375 92-178 (189)
63 PF13405 EF-hand_6: EF-hand do 98.0 5.8E-06 1.3E-10 50.3 3.3 30 305-335 1-31 (31)
64 PLN02964 phosphatidylserine de 98.0 1E-05 2.2E-10 84.1 7.1 64 305-374 180-243 (644)
65 PLN02964 phosphatidylserine de 98.0 9.9E-06 2.1E-10 84.2 6.9 65 300-373 139-206 (644)
66 PF12763 EF-hand_4: Cytoskelet 98.0 2.7E-05 5.9E-10 61.8 7.3 64 301-373 7-70 (104)
67 KOG0044 Ca2+ sensor (EF-Hand s 97.8 5E-05 1.1E-09 67.0 7.2 69 304-373 100-174 (193)
68 KOG4223 Reticulocalbin, calume 97.8 2E-05 4.3E-10 73.4 4.5 64 307-375 166-229 (325)
69 PF14788 EF-hand_10: EF hand; 97.8 8.7E-05 1.9E-09 49.8 5.7 46 321-371 1-46 (51)
70 KOG0044 Ca2+ sensor (EF-Hand s 97.7 0.00012 2.5E-09 64.7 7.1 66 301-372 61-126 (193)
71 PF14529 Exo_endo_phos_2: Endo 97.7 6.1E-05 1.3E-09 61.6 4.8 88 170-279 1-100 (119)
72 PF13202 EF-hand_5: EF hand; P 97.7 4.7E-05 1E-09 43.6 2.8 25 306-331 1-25 (25)
73 PF13202 EF-hand_5: EF hand; P 97.6 9.2E-05 2E-09 42.4 3.5 24 348-371 1-24 (25)
74 KOG0046 Ca2+-binding actin-bun 97.5 0.00019 4.2E-09 70.7 6.3 71 300-374 15-85 (627)
75 PRK12309 transaldolase/EF-hand 97.5 0.00014 2.9E-09 71.8 5.3 52 302-372 332-383 (391)
76 KOG0566 Inositol-1,4,5-triphos 97.4 0.00064 1.4E-08 71.6 8.9 164 29-223 538-726 (1080)
77 KOG4223 Reticulocalbin, calume 97.4 0.00019 4E-09 67.1 4.2 69 300-374 73-141 (325)
78 PF10591 SPARC_Ca_bdg: Secrete 97.4 9.5E-05 2.1E-09 59.9 1.9 60 302-369 52-111 (113)
79 PF13405 EF-hand_6: EF-hand do 97.0 0.00092 2E-08 40.5 3.6 27 347-373 1-27 (31)
80 KOG4065 Uncharacterized conser 97.0 0.0019 4.2E-08 50.8 5.8 62 309-371 72-142 (144)
81 KOG0040 Ca2+-binding actin-bun 96.9 0.0016 3.5E-08 71.4 6.5 69 303-377 2252-2327(2399)
82 KOG1294 Apurinic/apyrimidinic 96.8 0.0028 6.1E-08 61.0 6.3 109 167-278 166-308 (335)
83 KOG4251 Calcium binding protei 96.6 0.0013 2.9E-08 58.8 2.6 65 302-372 99-166 (362)
84 smart00054 EFh EF-hand, calciu 96.1 0.0072 1.6E-07 34.8 3.1 28 305-333 1-28 (29)
85 PF09279 EF-hand_like: Phospho 95.8 0.023 5E-07 43.2 5.4 66 305-376 1-71 (83)
86 KOG0377 Protein serine/threoni 95.7 0.056 1.2E-06 52.7 8.8 84 289-374 449-574 (631)
87 smart00054 EFh EF-hand, calciu 95.6 0.013 2.8E-07 33.6 2.9 26 347-372 1-26 (29)
88 KOG0034 Ca2+/calmodulin-depend 95.5 0.041 8.9E-07 48.6 6.5 62 305-372 67-130 (187)
89 KOG2643 Ca2+ binding protein, 95.3 0.014 3.1E-07 56.8 3.2 71 300-372 229-312 (489)
90 KOG2243 Ca2+ release channel ( 95.2 0.039 8.4E-07 60.3 6.3 81 287-374 4040-4120(5019)
91 PF13833 EF-hand_8: EF-hand do 95.2 0.024 5.2E-07 39.0 3.3 32 301-333 22-53 (54)
92 PTZ00312 inositol-1,4,5-tripho 93.8 0.085 1.8E-06 49.1 4.4 62 163-228 75-145 (356)
93 PF13499 EF-hand_7: EF-hand do 93.8 0.088 1.9E-06 37.8 3.7 27 348-374 2-28 (66)
94 KOG1029 Endocytic adaptor prot 93.6 0.086 1.9E-06 54.9 4.5 66 301-374 192-257 (1118)
95 KOG2643 Ca2+ binding protein, 92.8 0.046 1E-06 53.4 1.2 50 320-374 403-453 (489)
96 PF08726 EFhand_Ca_insen: Ca2+ 92.6 0.05 1.1E-06 39.5 0.9 57 302-372 4-67 (69)
97 KOG0042 Glycerol-3-phosphate d 92.1 0.23 5.1E-06 50.3 5.1 64 304-373 593-656 (680)
98 COG5411 Phosphatidylinositol 5 91.9 0.37 8E-06 47.5 6.0 56 166-223 163-218 (460)
99 PF05042 Caleosin: Caleosin re 91.5 0.76 1.6E-05 39.6 6.9 69 305-374 8-124 (174)
100 KOG1976 Inositol polyphosphate 91.5 0.24 5.3E-06 46.1 4.1 71 160-234 161-241 (391)
101 KOG4666 Predicted phosphate ac 90.8 0.25 5.5E-06 46.5 3.6 64 302-373 294-358 (412)
102 KOG4578 Uncharacterized conser 90.7 0.29 6.3E-06 46.1 3.9 97 268-372 283-396 (421)
103 PF05517 p25-alpha: p25-alpha 90.6 1.2 2.6E-05 38.2 7.4 63 307-372 2-67 (154)
104 KOG3866 DNA-binding protein of 90.5 0.36 7.7E-06 45.1 4.3 65 305-374 245-324 (442)
105 cd05022 S-100A13 S-100A13: S-1 90.5 0.67 1.4E-05 35.7 5.2 30 304-334 47-76 (89)
106 KOG1029 Endocytic adaptor prot 90.4 0.82 1.8E-05 48.0 7.1 49 316-372 27-75 (1118)
107 KOG1955 Ral-GTPase effector RA 90.2 0.52 1.1E-05 46.8 5.3 60 305-372 232-291 (737)
108 KOG3555 Ca2+-binding proteogly 89.7 0.33 7.2E-06 46.0 3.4 60 305-374 251-310 (434)
109 cd05026 S-100Z S-100Z: S-100Z 89.0 0.5 1.1E-05 36.7 3.5 33 302-335 51-83 (93)
110 PLN03191 Type I inositol-1,4,5 88.9 0.35 7.5E-06 50.0 3.2 58 167-224 419-482 (621)
111 cd00252 SPARC_EC SPARC_EC; ext 88.4 0.45 9.8E-06 38.6 3.0 29 303-332 79-107 (116)
112 cd05030 calgranulins Calgranul 88.3 1.2 2.7E-05 34.1 5.3 32 303-335 50-81 (88)
113 cd05023 S-100A11 S-100A11: S-1 88.0 1.2 2.5E-05 34.3 4.9 32 303-335 51-82 (89)
114 KOG4666 Predicted phosphate ac 87.3 0.94 2E-05 42.8 4.7 63 304-372 259-322 (412)
115 KOG2562 Protein phosphatase 2 87.1 1.2 2.6E-05 44.2 5.5 66 300-370 347-420 (493)
116 KOG4251 Calcium binding protei 86.6 1.1 2.4E-05 40.6 4.5 61 308-374 285-345 (362)
117 cd05029 S-100A6 S-100A6: S-100 86.6 0.86 1.9E-05 35.0 3.5 33 302-335 49-81 (88)
118 cd05031 S-100A10_like S-100A10 85.9 0.52 1.1E-05 36.6 2.0 33 302-335 49-81 (94)
119 PF14788 EF-hand_10: EF hand; 85.9 1.1 2.5E-05 30.2 3.3 30 304-334 21-50 (51)
120 cd05024 S-100A10 S-100A10: A s 85.6 1.3 2.8E-05 34.1 4.0 33 302-335 46-78 (91)
121 smart00027 EH Eps15 homology d 85.0 1.2 2.7E-05 34.6 3.7 29 346-374 10-38 (96)
122 PRK12309 transaldolase/EF-hand 84.8 1 2.2E-05 44.8 3.9 51 341-394 329-379 (391)
123 cd05025 S-100A1 S-100A1: S-100 84.6 2.6 5.7E-05 32.5 5.4 33 302-335 50-82 (92)
124 KOG2562 Protein phosphatase 2 83.6 1.4 3.1E-05 43.7 4.2 60 306-374 280-343 (493)
125 cd00051 EFh EF-hand, calcium b 83.2 1.9 4E-05 29.4 3.8 31 300-331 32-62 (63)
126 cd05027 S-100B S-100B: S-100B 82.6 2.7 5.8E-05 32.2 4.6 32 302-334 49-80 (88)
127 cd00052 EH Eps15 homology doma 81.8 1.9 4.2E-05 30.5 3.4 32 302-334 31-62 (67)
128 KOG0169 Phosphoinositide-speci 81.6 2.1 4.5E-05 45.2 4.8 66 301-372 133-198 (746)
129 cd00213 S-100 S-100: S-100 dom 79.9 1.8 4E-05 32.9 2.9 27 346-372 8-36 (88)
130 KOG0035 Ca2+-binding actin-bun 79.3 3.5 7.6E-05 44.7 5.6 68 301-374 744-816 (890)
131 KOG0751 Mitochondrial aspartat 76.7 8.2 0.00018 38.8 6.9 65 300-369 29-97 (694)
132 PF12763 EF-hand_4: Cytoskelet 72.7 4.2 9.2E-05 32.3 3.2 32 302-334 41-72 (104)
133 PF07499 RuvA_C: RuvA, C-termi 68.2 12 0.00026 24.8 4.2 42 324-374 3-44 (47)
134 KOG0751 Mitochondrial aspartat 66.2 12 0.00026 37.7 5.4 54 312-373 82-135 (694)
135 KOG0041 Predicted Ca2+-binding 66.2 6.2 0.00014 34.9 3.1 27 346-372 99-125 (244)
136 COG5239 CCR4 mRNA deadenylase, 65.6 4.4 9.6E-05 39.1 2.2 58 169-232 139-196 (378)
137 PF08976 DUF1880: Domain of un 64.2 7.4 0.00016 31.2 2.9 32 341-372 2-33 (118)
138 KOG0808 Carbon-nitrogen hydrol 62.5 7 0.00015 35.9 2.8 25 63-87 100-124 (387)
139 KOG0998 Synaptic vesicle prote 61.8 3 6.6E-05 45.9 0.5 63 302-372 281-343 (847)
140 KOG4004 Matricellular protein 55.0 6.1 0.00013 34.7 1.1 54 310-370 193-246 (259)
141 PF14658 EF-hand_9: EF-hand do 54.9 18 0.0004 26.0 3.3 32 302-333 33-64 (66)
142 PF03672 UPF0154: Uncharacteri 53.1 26 0.00057 25.0 3.8 31 320-355 30-60 (64)
143 PF01023 S_100: S-100/ICaBP ty 52.6 26 0.00057 22.9 3.6 32 302-333 4-36 (44)
144 KOG4347 GTPase-activating prot 52.6 16 0.00035 38.1 3.8 60 302-368 553-612 (671)
145 cd00086 homeodomain Homeodomai 50.9 48 0.001 22.4 5.1 40 302-354 11-50 (59)
146 KOG2871 Uncharacterized conser 50.9 14 0.0003 35.9 2.8 67 301-373 306-373 (449)
147 PF09069 EF-hand_3: EF-hand; 50.1 1.1E+02 0.0023 23.6 7.1 67 304-375 3-76 (90)
148 PRK01844 hypothetical protein; 49.0 1E+02 0.0022 22.5 6.5 42 307-355 26-67 (72)
149 PRK00523 hypothetical protein; 47.7 1.1E+02 0.0024 22.4 6.8 43 307-356 27-69 (72)
150 PLN02230 phosphoinositide phos 46.9 60 0.0013 34.3 7.0 69 303-375 28-103 (598)
151 PLN02952 phosphoinositide phos 46.7 1.1E+02 0.0023 32.5 8.8 68 303-375 37-111 (599)
152 KOG3449 60S acidic ribosomal p 45.4 80 0.0017 25.1 5.8 53 307-370 4-56 (112)
153 cd07313 terB_like_2 tellurium 45.0 25 0.00053 27.5 3.1 52 320-374 14-65 (104)
154 COG3763 Uncharacterized protei 44.7 58 0.0012 23.6 4.5 41 309-356 28-68 (71)
155 PF10591 SPARC_Ca_bdg: Secrete 44.0 21 0.00046 28.7 2.6 26 304-330 88-113 (113)
156 PF05042 Caleosin: Caleosin re 43.6 69 0.0015 27.9 5.7 74 303-379 95-170 (174)
157 KOG0038 Ca2+-binding kinase in 40.9 38 0.00082 28.4 3.6 56 311-372 78-134 (189)
158 PLN02222 phosphoinositide phos 40.2 73 0.0016 33.6 6.4 67 303-375 24-91 (581)
159 KOG1707 Predicted Ras related/ 38.9 30 0.00065 35.9 3.3 61 301-369 312-372 (625)
160 PF12419 DUF3670: SNF2 Helicas 38.5 32 0.0007 28.9 3.0 54 317-371 80-138 (141)
161 PF00404 Dockerin_1: Dockerin 38.5 47 0.001 18.0 2.5 16 314-330 1-16 (21)
162 PF14513 DAG_kinase_N: Diacylg 37.7 37 0.0008 28.5 3.1 46 320-372 6-58 (138)
163 PF00046 Homeobox: Homeobox do 36.7 1.1E+02 0.0024 20.6 5.1 40 302-354 11-50 (57)
164 KOG3555 Ca2+-binding proteogly 35.8 40 0.00086 32.5 3.3 72 296-370 203-274 (434)
165 PF03979 Sigma70_r1_1: Sigma-7 35.8 34 0.00073 25.7 2.4 33 320-359 20-52 (82)
166 PF08461 HTH_12: Ribonuclease 35.6 45 0.00098 23.9 2.9 35 320-359 12-46 (66)
167 KOG1707 Predicted Ras related/ 34.5 41 0.00088 35.0 3.4 72 292-369 182-260 (625)
168 PLN03191 Type I inositol-1,4,5 33.8 33 0.00072 35.9 2.7 16 423-438 576-591 (621)
169 PLN02228 Phosphoinositide phos 32.7 1.3E+02 0.0029 31.6 6.9 67 303-375 23-93 (567)
170 KOG0565 Inositol polyphosphate 31.9 34 0.00074 28.7 2.1 59 167-227 58-124 (145)
171 KOG1954 Endocytosis/signaling 30.6 54 0.0012 32.3 3.4 56 305-369 445-500 (532)
172 COG5562 Phage envelope protein 29.8 32 0.0007 28.4 1.5 28 351-378 77-104 (137)
173 COG4103 Uncharacterized protei 28.5 59 0.0013 27.2 2.8 60 309-374 35-94 (148)
174 KOG1955 Ral-GTPase effector RA 27.1 58 0.0013 33.0 3.0 33 301-334 262-294 (737)
175 PF12631 GTPase_Cys_C: Catalyt 26.6 1.3E+02 0.0028 21.9 4.1 53 300-355 19-72 (73)
176 PF01885 PTS_2-RNA: RNA 2'-pho 26.4 98 0.0021 27.4 4.1 39 314-358 26-64 (186)
177 PF07879 PHB_acc_N: PHB/PHA ac 23.9 1.3E+02 0.0027 21.5 3.4 45 311-356 10-59 (64)
178 cd08165 MPP_MPPE1 human MPPE1 23.4 95 0.002 26.4 3.4 50 171-223 2-51 (156)
179 PF07308 DUF1456: Protein of u 23.3 2.3E+02 0.005 20.4 4.8 26 325-355 17-42 (68)
180 PRK00819 RNA 2'-phosphotransfe 22.4 1.5E+02 0.0031 26.2 4.3 37 315-357 28-64 (179)
181 PF02037 SAP: SAP domain; Int 22.3 1.9E+02 0.0041 17.6 3.7 17 321-337 3-19 (35)
182 PF05099 TerB: Tellurite resis 22.0 37 0.0008 28.1 0.6 50 320-372 38-87 (140)
183 PTZ00235 DNA polymerase epsilo 21.5 2E+02 0.0043 27.4 5.3 14 211-224 64-77 (291)
184 PLN02223 phosphoinositide phos 20.7 2.3E+02 0.005 29.5 6.0 70 302-376 14-94 (537)
No 1
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=99.98 E-value=2e-31 Score=270.29 Aligned_cols=198 Identities=24% Similarity=0.387 Sum_probs=149.2
Q ss_pred CCceeEEecccccccccCCCCCCCCCCCCCccCChhhHHHHHHHHHhhCCCcEEEEcccccChhhHHHHHHHHhhhcCCc
Q 013259 27 QPCITCTTFNILAPIYKRLSNEDQNCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGYV 106 (447)
Q Consensus 27 ~~~lrV~T~NV~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~ 106 (447)
..+||||||||+++.|++.+.+ ++| +...+.|.+|+..|++.|..++||||||||| ..+++.+.+...|..+||.
T Consensus 252 ~~~frVmSYNILAd~ya~~dly-~yc--p~~aL~W~yRk~lIl~EI~~~~aDIICLQEV--~~~~~~d~~~p~L~~~GY~ 326 (606)
T PLN03144 252 AGTFTVLSYNILSDLYATSDMY-SYC--PPWALSWTYRRQNLLREIVGYRADILCLQEV--QSDHFEEFFAPELDKHGYQ 326 (606)
T ss_pred CCCEEEEEeeeccccccCcccc-cCC--CccccCHHHHHHHHHHHHHhcCCCEEEEeec--CHHHHHHHHHhhhhhcCce
Confidence 5689999999999988876533 455 4578899999999999999999999999999 4556777888889999999
Q ss_pred EEEecCCCC-------CCceEEEEEecCCceEeeeEEEEecCCC-----Cchh------hhhhh--cccccccccccC--
Q 013259 107 NFKLARTNN-------RGDGLLTAVHKDYFRVVNYRDLLFNDFG-----DRVA------QLLHV--ELIDPFSQCRNG-- 164 (447)
Q Consensus 107 ~~~~~~~~~-------~~~G~ai~~rs~~~~i~~~~~~~~~~~~-----~~~~------~~~~l--~~~~~~~~~~~~-- 164 (447)
.++..+++. ..+|+|||||+++|.+++...+.|.... .... ....+ .....+...+..
T Consensus 327 Gv~~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~~~lslt~~~~~s~~~~~~l~Rl~kdNVAliv~Le~k~~ 406 (606)
T PLN03144 327 ALYKKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNKAAQSLTEALIPSAQKKAALNRLLKDNVALIVVLEAKFG 406 (606)
T ss_pred EEEeCCCCccccccccCCceeEEEEECcceEEEEeeeeeccchhhccCccccccccchhhhhhhccCcEEEEEEEEEecc
Confidence 988766532 4679999999999999999888664321 1000 00000 001111111111
Q ss_pred -------CCCCeEEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCccCCchhHhhhh
Q 013259 165 -------DLRQEILIVNTHLLFPHDSSLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRGHVYKFLRS 234 (447)
Q Consensus 165 -------~~g~~l~v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~ 234 (447)
..++.|+|+||||+|.+ .....|+.|+..|++.++++... .+.|+|||||||+.|++.+|+.|..
T Consensus 407 ~~~~~~~~~~~~l~VaNTHL~~~p--~~~dvRl~Q~~~Ll~~l~~~~~~---~~~PvIlcGDFNS~P~S~vy~lLt~ 478 (606)
T PLN03144 407 NQGADNGGKRQLLCVANTHIHANQ--ELKDVKLWQVHTLLKGLEKIAAS---ADIPMLVCGDFNSVPGSAPHCLLAT 478 (606)
T ss_pred cccccCCCCccEEEEEEeeeccCC--ccchhHHHHHHHHHHHHHHHhhc---CCCceEEeccCCCCCCChhhhhhhc
Confidence 23457999999998855 45678999999999999887543 4789999999999999999998853
No 2
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=99.97 E-value=2.4e-29 Score=242.23 Aligned_cols=376 Identities=29% Similarity=0.365 Sum_probs=235.0
Q ss_pred ceeEEecccccccccCCCCCCCCCCCCCccCChhhHHHHHHHHHhhCCCcEEEEcccccChhhHHHHHHHHhhhcCCcEE
Q 013259 29 CITCTTFNILAPIYKRLSNEDQNCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGYVNF 108 (447)
Q Consensus 29 ~lrV~T~NV~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~~ 108 (447)
.|+||||||+++.+... ....+...+...+.|..|...|+..+..++|||||||||+ .+++...+.+.+..+||..+
T Consensus 116 ~ftvmSYNILAQ~l~~~-~~r~~~~~s~~~L~W~~R~~~Ll~EL~~~dpDIlCLQEVq--~d~~~~~~~~~~~~lGy~~~ 192 (495)
T KOG2338|consen 116 DFTVMSYNILAQDLLRD-IRRLYFPESGPALKWLRRSQNLLNELKHYDPDVLCLQEVQ--EDHYPEFWQPLLGKLGYTGF 192 (495)
T ss_pred ceEEEEehHhHHHHHHH-hHHhhccCChhhcchhHHhHHHHHHHhhcCCCeeeehhhh--hhhhHHHHHHHHhhcCceEE
Confidence 79999999999865221 1111234677899999999999999999999999999994 45677788888988999998
Q ss_pred EecCCCCCCceEEEEEecCCceEeeeEEEEecCCCCchhhhhhhcccccccccccCC-CCCeEEEEEecccCCCCCCCch
Q 013259 109 KLARTNNRGDGLLTAVHKDYFRVVNYRDLLFNDFGDRVAQLLHVELIDPFSQCRNGD-LRQEILIVNTHLLFPHDSSLSL 187 (447)
Q Consensus 109 ~~~~~~~~~~G~ai~~rs~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~g~~l~v~n~HL~~~~~~~~~~ 187 (447)
+..+...+..||||+|++.+|.++....+.+.+.....+...++.....+ .++... .++.+.|+||||.+++ ....
T Consensus 193 ~~r~t~~KthG~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l-~f~~~~~~sq~ilVanTHLl~np--~~~~ 269 (495)
T KOG2338|consen 193 FKRRTGTKTHGVAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSL-EFRLVDESSQGILVANTHLLFNP--SRSD 269 (495)
T ss_pred EEeccCCCCceEEEEEecccceecccchhhcccccchhhcccceeEEEEE-EecccCcccCceEEEeeeeeecC--cccc
Confidence 88778889999999999999999998888776543322222222111110 121222 3568999999999976 4567
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCccCCchhHhhhhCCCcccccccccCCCCCCCceeecccCCCcccc
Q 013259 188 VRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDTAHQYTDADAHKWVSHRNHRGNICG 267 (447)
Q Consensus 188 ~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~g~~d~~~~~~~~~~~~~~tw~~~~~~~~~~~r 267 (447)
.|++|...|++.++++.+..+ ..-|+++|||||+.|.++.|..|.+.++.-.....+. ......|.......| ...
T Consensus 270 vrL~Q~~iiL~~~~~~~~~~~-~~~pi~l~GDfNt~p~~~~y~fl~~~~l~~~~~~~~~--~e~s~~~~~~~~~~g-e~g 345 (495)
T KOG2338|consen 270 VRLAQVYIILAELEKMSKSSK-SHWPIFLCGDFNTEPDSPPYLFLTSGPLIYDGRAAHT--IEDSHRYVFSESRLG-EEG 345 (495)
T ss_pred hhhHHHHHHHHHHHHHHhhcc-cCCCeEEecCCCCCCCCCcchhhhcCCceeccccccc--ccccccccccccccC-ccc
Confidence 799999999999999887543 4679999999999999999999988888744433331 122222322211111 111
Q ss_pred ccceeccCcchhhhhhhhhhhHHHHhHHHHHHHhhhhhHHHHhhhhc-CCCCCCcccHHHHHHHHHHhccCCCCCCCCHH
Q 013259 268 VDFIWLLNPNKYRKLLKASWSEAVFGMFKCLLRRASLTETDAFAFLK-ADNDGDYITYSGFCEALEQLNLTGHKHGLADE 346 (447)
Q Consensus 268 IDyI~~~~~~~~~~~~~~sw~~~v~~~~~~~~~~~~~~l~~~F~~~D-~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~ 346 (447)
. ...|..+++....-......-.-.++|...- ++.. =..+..|+....+++++..++..+..
T Consensus 346 ~---------------d~~~~~~~~s~~k~~~~~~s~~~~e~~t~~g~~~~~-~~~~~~~h~~~~~~~s~~s~g~~~~~- 408 (495)
T KOG2338|consen 346 E---------------DDEEESAAFSRGKGQLSQASIPKPEIFTATGDKNHL-VELTYSEHESLKVNVSLYSHGYGLVH- 408 (495)
T ss_pred c---------------cchhhhhhhccCccccccccCCCccccccccccchh-HHHHHHHhhhhhcccceeeccccccc-
Confidence 1 1124444444333333111122222333221 1111 12334444442222222112233332
Q ss_pred HHHHHHHHcCCCCCceeehHHHHHHHhccCcccccccCCCcccccccccccccccceEEeccccCCcccccCCCCCC-CC
Q 013259 347 ETKDLWVQADIDGNGVVDYKEFQQRIWKTTWSDQRNDLNDEDEDGFVKSSLEQTIGFSVKNAVLFPPEVEKGRWPEN-YS 425 (447)
Q Consensus 347 ~~~~~~~~~D~~~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 425 (447)
.+...- |.+..|..+|.+-.....+-......+...+-. +.+ ....++++..-....+.+++++-||.+ +=
T Consensus 409 -~~~~~~--~~gep~vt~~~~~~~g~~dyif~~~~~~~~~~~--~~~---~~~~ikl~~~l~ip~~~e~~k~~~p~~~~~ 480 (495)
T KOG2338|consen 409 -TENAWL--DRGEPGVTNYALTWKGTLDYIFYSPGDCKQSNR--EFE---EDEAIKLKGLLRIPSPQEMWKAGQPPNGRY 480 (495)
T ss_pred -hhhccc--cCCCcceecHHhhhccceeeEEeccCcccccch--hhh---cccceeEEEEecCCCHHHhhccCCCCCCCC
Confidence 222222 777888888876553333322222222111111 111 133566777777778888989999988 55
Q ss_pred CCCCcceeEEeeec
Q 013259 426 LSDHARLTVVFSPI 439 (447)
Q Consensus 426 ~~~~~~l~~~~~~~ 439 (447)
-|||-.|.++|++.
T Consensus 481 ~SDH~aL~~~~~~~ 494 (495)
T KOG2338|consen 481 GSDHIALVAQFSLV 494 (495)
T ss_pred cccceEeeEeeEee
Confidence 69999999999873
No 3
>PRK11756 exonuclease III; Provisional
Probab=99.92 E-value=1.7e-24 Score=205.34 Aligned_cols=204 Identities=16% Similarity=0.168 Sum_probs=128.4
Q ss_pred eeEEecccccccccCCCCCCCCCCCCCccCChhhHHHHHHHHHhhCCCcEEEEcccccChhhHHHHHHHHhhhcCCcEEE
Q 013259 30 ITCTTFNILAPIYKRLSNEDQNCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGYVNFK 109 (447)
Q Consensus 30 lrV~T~NV~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~~~ 109 (447)
|||+||||++. ..|...++++|.+.+||||||||++.....+.. ..+...||.+++
T Consensus 1 mri~T~Nv~g~---------------------~~~~~~i~~~i~~~~pDIi~LQE~~~~~~~~~~---~~~~~~gy~~~~ 56 (268)
T PRK11756 1 MKFVSFNINGL---------------------RARPHQLEAIIEKHQPDVIGLQETKVHDEMFPL---EEVEALGYHVFY 56 (268)
T ss_pred CEEEEEEcCCH---------------------HHHHHHHHHHHHhcCCCEEEEEecccccccCCH---HHHHhcCCEEEE
Confidence 69999999852 135788999999999999999999644332221 123346887765
Q ss_pred ecCCCCCCceEEEEEecCCceEeeeEEEEecCCC-CchhhhhhhcccccccccccCCCCCeEEEEEecccCCCCCC---C
Q 013259 110 LARTNNRGDGLLTAVHKDYFRVVNYRDLLFNDFG-DRVAQLLHVELIDPFSQCRNGDLRQEILIVNTHLLFPHDSS---L 185 (447)
Q Consensus 110 ~~~~~~~~~G~ai~~rs~~~~i~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~g~~l~v~n~HL~~~~~~~---~ 185 (447)
.. .....|+||+ |+ +|+..... .++... ...... ..+.+...++.+.|+|+|+..+.... .
T Consensus 57 ~~--~~~~~Gvail--Sr-~p~~~~~~-~~~~~~~~~~~r~---------l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~ 121 (268)
T PRK11756 57 HG--QKGHYGVALL--SK-QTPIAVRK-GFPTDDEEAQRRI---------IMATIPTPNGNLTVINGYFPQGESRDHPTK 121 (268)
T ss_pred eC--CCCCCEEEEE--EC-CChHHeEE-CCCCccccccCCE---------EEEEEEcCCCCEEEEEEEecCCCCCCcchh
Confidence 42 3445799999 66 56654332 222111 111111 11223333445999999985432111 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCccCCc--------------------------hhHhhhhCCCcc
Q 013259 186 SLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRGH--------------------------VYKFLRSQGFVS 239 (447)
Q Consensus 186 ~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~--------------------------~~~~l~~~g~~d 239 (447)
...|.++...|.+.+.+..+ .+.|+|||||||+.|.+. .++.|...||+|
T Consensus 122 ~~~r~~~~~~l~~~l~~~~~----~~~pvIl~GDfN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~l~D 197 (268)
T PRK11756 122 FPAKRQFYQDLQNYLETELS----PDNPLLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWLDRLMDWGLVD 197 (268)
T ss_pred HHHHHHHHHHHHHHHHHHhc----cCCCEEEEeecccCCChhhcCCcccChHHhcccCCccCCHHHHHHHHHHHhCCcEe
Confidence 12466777777777766533 567999999999987654 445566779999
Q ss_pred cccccccCCCCCCCceeecccC---CCccccccceeccCcc
Q 013259 240 SYDTAHQYTDADAHKWVSHRNH---RGNICGVDFIWLLNPN 277 (447)
Q Consensus 240 ~~~~~~~~~~~~~~tw~~~~~~---~~~~~rIDyI~~~~~~ 277 (447)
+|+..++... ...||..++.. .+...||||||+++..
T Consensus 198 ~~R~~~p~~~-~~~T~~~~~~~~~~~~~g~RIDyi~~s~~~ 237 (268)
T PRK11756 198 TFRQLNPDVN-DRFSWFDYRSKGFDDNRGLRIDLILATQPL 237 (268)
T ss_pred ehhhhCCCCC-CcccCcCCcccccccCCceEEEEEEeCHHH
Confidence 9999887522 24566554421 1345799999997543
No 4
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.91 E-value=1.1e-23 Score=199.49 Aligned_cols=218 Identities=15% Similarity=0.162 Sum_probs=137.4
Q ss_pred eeEEecccccccccCCCCCCCCCCCCCccCChhhHHHHHHHHHhhCCCcEEEEcccccChhhHHHHHHHHh-hhcCCcEE
Q 013259 30 ITCTTFNILAPIYKRLSNEDQNCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRL-SDAGYVNF 108 (447)
Q Consensus 30 lrV~T~NV~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l-~~~gy~~~ 108 (447)
||||||||+...+. ......|..|.++|++.+...+|||||||||+. ....+.+...| ..++|...
T Consensus 1 lkVmtyNv~~l~~~-----------~~~~~g~~~R~~~i~~~~~~~~~DVV~LQEv~~--~~~~~~l~~~L~~~yp~~~~ 67 (283)
T TIGR03395 1 IKILSHNVYMLSTN-----------LYPNWGQMERADLIASADYIKNQDVVILNEAFD--TSASKRLLDNLREEYPYQTD 67 (283)
T ss_pred CeEEEEEeeeeccc-----------ccCCccHhHHHHHHHHhhcccCCCEEEEecccc--hHHHHHHHHHHHhhCCceEe
Confidence 69999999963111 112234778999999999999999999999953 23233344444 34666543
Q ss_pred EecCC--------------CCCCceEEEEEecCCceEeeeEEEEecCCCCchhhhhhhcccccccccccCCCCCeEEEEE
Q 013259 109 KLART--------------NNRGDGLLTAVHKDYFRVVNYRDLLFNDFGDRVAQLLHVELIDPFSQCRNGDLRQEILIVN 174 (447)
Q Consensus 109 ~~~~~--------------~~~~~G~ai~~rs~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~v~n 174 (447)
..++. .....|++|+ |+ +||.......|+.....- .. ....+..+++..+|..+.|+|
T Consensus 68 ~~g~~~~g~~~~~g~~~~~~~~~~G~~iL--Sr-~Pi~~~~~~~f~~~~~~d-~~----~~kg~l~a~i~~~g~~~~v~~ 139 (283)
T TIGR03395 68 VIGRSKKGWDKTLGNYSSSALEDGGVAIV--SK-WPIEEKIQYIFNKGCGAD-NL----SNKGFAYVKINKNGKKFHVIG 139 (283)
T ss_pred ecccccccchhccccccccCccCCEEEEE--EC-CCccccEEEEccCCCCCc-cc----cCCceEEEEEecCCeEEEEEE
Confidence 22221 1234599999 99 899988777775322110 00 011223355566788999999
Q ss_pred ecccCCCCC----CCchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCccCCchhHhhhhC-CCcccccccccCCC
Q 013259 175 THLLFPHDS----SLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRGHVYKFLRSQ-GFVSSYDTAHQYTD 249 (447)
Q Consensus 175 ~HL~~~~~~----~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~-g~~d~~~~~~~~~~ 249 (447)
|||.+.... .....|..|+..|.+++.... ...+.|+|||||||+.|.+..|+.|... +..+.. +.
T Consensus 140 THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~~---~~~~~pvIl~GDfN~~~~s~~~~~ml~~l~~~~p~-----~~- 210 (283)
T TIGR03395 140 THLQAQDSMCSKLGPASIRANQLNEIQDFIDSKN---IPKDETVLIGGDLNVNKGSNEYHDMFKTLNVSEPR-----YV- 210 (283)
T ss_pred eCCCCCcccccccccHHHHHHHHHHHHHHHhhcc---CCCCceEEEEeeCCCCCCCHHHHHHHHHhcccCCC-----cC-
Confidence 999774321 125679999999998886421 1146789999999999999999877543 222111 11
Q ss_pred CCCCceeeccc-------CCCccccccceeccCcc
Q 013259 250 ADAHKWVSHRN-------HRGNICGVDFIWLLNPN 277 (447)
Q Consensus 250 ~~~~tw~~~~~-------~~~~~~rIDyI~~~~~~ 277 (447)
....||....| ..+...+|||||+++..
T Consensus 211 g~~~T~d~~~N~~a~~~~~~~~~~~lDyvl~~~~~ 245 (283)
T TIGR03395 211 GVPATWDATTNSIAKYYYPKEEPEYLDYIFVSKSH 245 (283)
T ss_pred CCCCCcCCCcCchhhhhcCCCCcceEEEEEEECCC
Confidence 12345544322 12335599999998553
No 5
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.1e-23 Score=191.74 Aligned_cols=205 Identities=23% Similarity=0.383 Sum_probs=129.4
Q ss_pred eeEEecccccccccCCCCCCCCCCCCCccCChhhHHHHHHHHHhhCCCcEEEEcccccChhhHHHHHHHHhhhcCCcEEE
Q 013259 30 ITCTTFNILAPIYKRLSNEDQNCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGYVNFK 109 (447)
Q Consensus 30 lrV~T~NV~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~~~ 109 (447)
|||+||||.+. ..|.+.+.+++.+.+||||||||++..++++.. ..+...||+.++
T Consensus 1 mkI~SwNVNgi---------------------Rar~~~~~~~l~~~~pDVlclQEtK~~~~~fp~---~~~~~~GY~~~~ 56 (261)
T COG0708 1 MKIASWNVNGL---------------------RARLKKLLDWLEEEQPDVLCLQETKAQDEQFPR---EELEALGYHHVF 56 (261)
T ss_pred CeeEEEehhhH---------------------HHHHHHHHHHHHHhCCCEEEEEecccCcccCCH---hHHhhCCceEEE
Confidence 69999999963 147888999999999999999999877766653 334457995544
Q ss_pred ecCCCCCCceEEEEEecCCceEeeeEEEEecC--CCCchhhhhhhcccccccccccCCCCCeEEEEEecccCCCCCCCch
Q 013259 110 LARTNNRGDGLLTAVHKDYFRVVNYRDLLFND--FGDRVAQLLHVELIDPFSQCRNGDLRQEILIVNTHLLFPHDSSLSL 187 (447)
Q Consensus 110 ~~~~~~~~~G~ai~~rs~~~~i~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~v~n~HL~~~~~~~~~~ 187 (447)
.... .+..||||++|.. +.+ ....++. ..+..++.+... -..|.|+|+ |.|++.....
T Consensus 57 ~~gq-KgysGVailsr~~---~~~-v~~g~~~~~~~d~e~R~I~a~-------------~~~~~v~~~--Y~PnG~~~~~ 116 (261)
T COG0708 57 NHGQ-KGYSGVAILSKKP---PDD-VRRGFPGEEEDDEEGRVIEAE-------------FDGFRVINL--YFPNGSSIGL 116 (261)
T ss_pred ecCc-CCcceEEEEEccC---chh-hhcCCCCCccccccCcEEEEE-------------ECCEEEEEE--EcCCCCCCCC
Confidence 4222 5557999995444 221 1122222 111112221111 123899999 7776543233
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCccCC-----------------------chhHhhhhCCCccccccc
Q 013259 188 VRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRG-----------------------HVYKFLRSQGFVSSYDTA 244 (447)
Q Consensus 188 ~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s-----------------------~~~~~l~~~g~~d~~~~~ 244 (447)
.|..+-....+.+..++.+....+.|+|||||||..|.. ..++.|...||+|+|+..
T Consensus 117 ~k~~yKl~f~~~l~~~l~~l~~~~~~~vl~GD~NIap~~iDv~~~~~~~~n~~~~~f~~eeR~~~~~ll~~G~~D~~R~~ 196 (261)
T COG0708 117 EKFDYKLRFLDALRNYLEELLKKGKPVVLCGDFNIAPEEIDVANPKKRWLNEGNSGFLPEERAWFRRLLNAGFVDTFRLF 196 (261)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcCCCEEEecccccCCchhcccCchhhhhcCCCCCCCHHHHHHHHHHHHcchhhhhHhh
Confidence 444444444444444444333367899999999987541 135567788999999999
Q ss_pred ccCCCCCCCceeecccC---CCccccccceeccCcchhh
Q 013259 245 HQYTDADAHKWVSHRNH---RGNICGVDFIWLLNPNKYR 280 (447)
Q Consensus 245 ~~~~~~~~~tw~~~~~~---~~~~~rIDyI~~~~~~~~~ 280 (447)
++..+. +||.+++.. ...+.||||+++++..+.+
T Consensus 197 ~p~~~~--YTwW~YR~~~~~~n~G~RID~~l~S~~L~~~ 233 (261)
T COG0708 197 HPEPEK--YTWWDYRANAARRNRGWRIDYILVSPALADR 233 (261)
T ss_pred CCCCCc--ccccccccchhhhcCceeEEEEEeCHHHHHH
Confidence 876443 666655522 2346799999997765443
No 6
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=99.86 E-value=1.5e-21 Score=181.05 Aligned_cols=198 Identities=24% Similarity=0.338 Sum_probs=139.8
Q ss_pred ceeEEecccccccccCCCCCCCCCCCCCccCChhhHHHHHHHHHhhCCCcEEEEcccccChhhHHHHHHHHhhhcCCcEE
Q 013259 29 CITCTTFNILAPIYKRLSNEDQNCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGYVNF 108 (447)
Q Consensus 29 ~lrV~T~NV~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~~ 108 (447)
.++|||||++++.|+++.-+ +.+...+.|.+|.+.|++.|..++|||+|||||+ ...+.+.+.+.|...||...
T Consensus 30 ~ftimTYN~Laq~y~~r~~y----~~s~~aL~W~~R~~~L~~EL~~Yn~Di~CLQEvd--~~~~~~fw~~~l~~~gY~~i 103 (378)
T COG5239 30 DFTIMTYNVLAQTYATRKMY----PYSGWALKWSYRSRLLLQELLYYNADILCLQEVD--AEDFEDFWKDQLGKLGYDGI 103 (378)
T ss_pred eeEEEehhhhhhhhcccccc----CCchhhhhhHHHHHHHHHHHhccCCceeeeehhh--hhHHHHHHHHHhcccccceE
Confidence 59999999999999988865 3345688999999999999999999999999994 45688899999999999988
Q ss_pred EecCCC--------C--CCceEEEEEec----CCceEeeeEEEEe--cCCC-----------Cchhhhhhhccccccccc
Q 013259 109 KLARTN--------N--RGDGLLTAVHK----DYFRVVNYRDLLF--NDFG-----------DRVAQLLHVELIDPFSQC 161 (447)
Q Consensus 109 ~~~~~~--------~--~~~G~ai~~rs----~~~~i~~~~~~~~--~~~~-----------~~~~~~~~l~~~~~~~~~ 161 (447)
+..+.+ . ...||+|+++. .++-++-.....| +-.. +++.....+.+...+...
T Consensus 104 f~~k~~k~~~m~~~d~t~~dGc~if~k~~~~~sk~~li~~~~~~f~~p~~~~er~r~t~~~lnri~e~~~~~w~~l~~~l 183 (378)
T COG5239 104 FIPKERKVKWMIDYDTTKVDGCAIFLKRFIDSSKLGLILAVTHLFWHPYGYYERFRQTYILLNRIGEKDNIAWVCLFVGL 183 (378)
T ss_pred EecCCCcccccccccccccceEEEEEEeccccchhhhhhhhhHhhcccceeehhhhHHHHHHHHHhhhhhcchhheeeee
Confidence 876554 1 34699999866 2222222111111 1100 111111222211122233
Q ss_pred ccCCCCCeEEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHHHcCC-----------CCCcEEEeecCCCccCCchhH
Q 013259 162 RNGDLRQEILIVNTHLLFPHDSSLSLVRLHQVYKILQHVESYQKEHNL-----------KPIPIILCGDWNGSKRGHVYK 230 (447)
Q Consensus 162 ~~~~~g~~l~v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~~~~~~~~~-----------~~~pvIl~GDFN~~p~s~~~~ 230 (447)
....+|..+.++|||++|.+ ......+-|...+.+.+++...+..+ +..++.+|||||+...+.+|.
T Consensus 184 ~n~e~gd~~~va~Th~~w~~--~~~dvk~iq~s~l~~~~k~~~~e~~~~d~~~~d~k~~~~~~~l~~gd~ns~~~s~vy~ 261 (378)
T COG5239 184 FNKEPGDTPYVANTHLPWDP--KYRDVKLIQCSLLYRELKKVLKEELNDDKEEGDIKSYPEVDILITGDFNSLRASLVYK 261 (378)
T ss_pred ccCCCCCceeEEeccccccC--CCCchheehhhHHHHHHHHHhhhcCCcchhccccccCcccccccCCCccceecceehh
Confidence 44557899999999999954 34566788888888888887765422 122679999999999998888
Q ss_pred hhhh
Q 013259 231 FLRS 234 (447)
Q Consensus 231 ~l~~ 234 (447)
.|..
T Consensus 262 ~l~~ 265 (378)
T COG5239 262 FLVT 265 (378)
T ss_pred hhhh
Confidence 8765
No 7
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=99.85 E-value=1.1e-21 Score=181.18 Aligned_cols=224 Identities=19% Similarity=0.180 Sum_probs=156.2
Q ss_pred CceeEEecccccccccCCCCCCCCCCCCCccCChhhHHHHHHHHHhhCCCcEEEEcccccChhhHHHHHHHHh-hhcCCc
Q 013259 28 PCITCTTFNILAPIYKRLSNEDQNCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRL-SDAGYV 106 (447)
Q Consensus 28 ~~lrV~T~NV~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l-~~~gy~ 106 (447)
-.+||+|.|+|+..|.+.. ...|+..+.+.+.....||+.|||||... ++ ..|++.. ..|+|.
T Consensus 7 ~~lriltlN~Wgip~~Sk~--------------R~~Rm~~~g~~l~~E~yDiv~LQEvWs~e-D~-~~L~~~~ss~yPys 70 (422)
T KOG3873|consen 7 LELRILTLNIWGIPYVSKD--------------RRHRMDAIGDELASEKYDIVSLQEVWSQE-DF-EYLQSGCSSVYPYS 70 (422)
T ss_pred heeeeeEeeccccccccch--------------hHHHHHHHhHHHhhcccchhhHHHHHHHH-HH-HHHHHhccccCchH
Confidence 3599999999986443322 22588999999999999999999998543 33 3344433 347887
Q ss_pred EEEecCCCCCCceEEEEEecCCceEeeeEEEEecCCC--CchhhhhhhcccccccccccCCCCCeEEEEEecccCCCC--
Q 013259 107 NFKLARTNNRGDGLLTAVHKDYFRVVNYRDLLFNDFG--DRVAQLLHVELIDPFSQCRNGDLRQEILIVNTHLLFPHD-- 182 (447)
Q Consensus 107 ~~~~~~~~~~~~G~ai~~rs~~~~i~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~g~~l~v~n~HL~~~~~-- 182 (447)
.++. ++--+.|+++| |+ +||+++....++-.+ ..+-....... ..+..+.+..+|..+.++||||+++-+
T Consensus 71 h~FH--SGimGaGL~vf--SK-~PI~~t~~~~y~lNG~p~~i~rGDWf~G-K~Vgl~~l~~~g~~v~~yntHLHAeY~rq 144 (422)
T KOG3873|consen 71 HYFH--SGIMGAGLCVF--SK-HPILETLFHRYSLNGYPHAIHRGDWFGG-KGVGLTVLLVGGRMVNLYNTHLHAEYDRQ 144 (422)
T ss_pred Hhhh--cccccCceEEe--ec-CchhhhhhhccccCCccceeeecccccc-ceeEEEEEeeCCEEeeeeehhcccccccc
Confidence 7664 34457899999 99 899988776665432 11111111111 111234455577889999999988643
Q ss_pred -CCCchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCccCCchhHhhhhCCCcccccccccC--------------
Q 013259 183 -SSLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDTAHQY-------------- 247 (447)
Q Consensus 183 -~~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~g~~d~~~~~~~~-------------- 247 (447)
..+...|..|+..+.++++...+ ...-||+|||||..|.+-.++.|...|++|+|...+..
T Consensus 145 ~D~YL~HR~~QAwdlaqfi~~t~q----~~~vVI~~GDLN~~P~dl~~~ll~~a~l~daw~~~h~~q~e~~~~r~s~~~~ 220 (422)
T KOG3873|consen 145 NDEYLCHRVAQAWDLAQFIRATRQ----NADVVILAGDLNMQPQDLGHKLLLSAGLVDAWTSLHLDQCESDSFRLSEDKE 220 (422)
T ss_pred CchhhhHHHHHHHHHHHHHHHHhc----CCcEEEEecCCCCCccccceeeeeccchhhhHhhhchhhhcCcccccchhhh
Confidence 23566799999999999998765 56679999999999999999999989999999876532
Q ss_pred ------CCCCCCceeecccCCCc--cccccceeccCcc
Q 013259 248 ------TDADAHKWVSHRNHRGN--ICGVDFIWLLNPN 277 (447)
Q Consensus 248 ------~~~~~~tw~~~~~~~~~--~~rIDyI~~~~~~ 277 (447)
++....+|+........ .+||||||+++..
T Consensus 221 l~~g~tcd~~~N~y~~aqk~~ddp~~~RiDYvl~k~~~ 258 (422)
T KOG3873|consen 221 LVEGNTCDSPLNCYTSAQKREDDPLGKRIDYVLVKPGD 258 (422)
T ss_pred hhcCCcccCcchhhhHHHhCCCCccceeeeEEEEcCcc
Confidence 12234556643222222 5699999997653
No 8
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.85 E-value=4.4e-21 Score=174.27 Aligned_cols=206 Identities=16% Similarity=0.100 Sum_probs=127.6
Q ss_pred ceeEEecccccccccCCCCCCCCCCCCCccCChhhHHHHHHHHHhhCCCcEEEEcccccC----hhhHHHHHHHHhhhcC
Q 013259 29 CITCTTFNILAPIYKRLSNEDQNCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVG----NEELVDMYEKRLSDAG 104 (447)
Q Consensus 29 ~lrV~T~NV~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~i~~~I~~~~~DII~LQEv~~~----~~~~~~~l~~~l~~~g 104 (447)
.++|+||||+... .. ..+..+.+.+++.|.+..+|||||||+... ...+.++........+
T Consensus 9 ~~~v~TyNih~~~------------~~---~d~r~~~~r~~~~i~~~~~Div~LQEv~~~~~~~r~~~~~~~~~~~~~~~ 73 (259)
T COG3568 9 RFKVLTYNIHKGF------------GA---FDRRFDLPRIAEVIREVGADIVALQEVDGAFGRHRDGLLDLPHLLGRLGL 73 (259)
T ss_pred eeEEEEEEEEEcc------------Cc---cCceecHHHHHHHHHhhccCeeeeecccccccccccccchhHHHHHHhcC
Confidence 3899999999531 11 123456899999999999999999999631 1222232222222223
Q ss_pred CcEEEecC-----CCCCCceEEEEEecCCceEeeeEEEEecCC---CCchhhhhhhcccccccccccCC-CCCeEEEEEe
Q 013259 105 YVNFKLAR-----TNNRGDGLLTAVHKDYFRVVNYRDLLFNDF---GDRVAQLLHVELIDPFSQCRNGD-LRQEILIVNT 175 (447)
Q Consensus 105 y~~~~~~~-----~~~~~~G~ai~~rs~~~~i~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~-~g~~l~v~n~ 175 (447)
..+.+... ......|++|+ |+ +|+.......++.. ..+.+.. +.+.. .|++|.|+|+
T Consensus 74 ~~~~~~~~~~~a~~~~~~~GnaiL--S~-~pi~~v~~~~lp~~~~~~~Rgal~-----------a~~~~~~g~~l~V~~~ 139 (259)
T COG3568 74 APYWWSGAAFGAVYGEGQHGNAIL--SR-LPIRDVENLALPDPTGLEPRGALL-----------AEIELPGGKPLRVINA 139 (259)
T ss_pred CccccchhhhhhhcccceeeeEEE--ec-CcccchhhccCCCCCCCCCceeEE-----------EEEEcCCCCEEEEEEE
Confidence 22222111 23345699999 66 88888888877753 2232222 22333 4789999999
Q ss_pred cccCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCccCCchhHhhhhCCC--cccccc-cccCCCCCC
Q 013259 176 HLLFPHDSSLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRGHVYKFLRSQGF--VSSYDT-AHQYTDADA 252 (447)
Q Consensus 176 HL~~~~~~~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~g~--~d~~~~-~~~~~~~~~ 252 (447)
||.+ ....|..|+..|++.+.- . ...|+|+|||||..|.++.|+.....-+ ..+... .........
T Consensus 140 HL~l-----~~~~R~~Q~~~L~~~~~l-----~-~~~p~vl~GDFN~~p~s~~yr~~~~~~~~~~~~~~~~~~~a~~~~~ 208 (259)
T COG3568 140 HLGL-----SEESRLRQAAALLALAGL-----P-ALNPTVLMGDFNNEPGSAEYRLAARSPLNAQAALTGAFAPAVGRTI 208 (259)
T ss_pred eccc-----cHHHHHHHHHHHHhhccC-----c-ccCceEEEccCCCCCCCccceeccCCchhhccccccccCcccCccc
Confidence 9953 446699999999882211 1 2239999999999999999966543311 111111 111111223
Q ss_pred CceeecccCCCccccccceeccCcch
Q 013259 253 HKWVSHRNHRGNICGVDFIWLLNPNK 278 (447)
Q Consensus 253 ~tw~~~~~~~~~~~rIDyI~~~~~~~ 278 (447)
.+|+++.+ ..+|||||+++...
T Consensus 209 ~tfps~~p----~lriD~Ifvs~~~~ 230 (259)
T COG3568 209 RTFPSNTP----LLRLDRIFVSKELA 230 (259)
T ss_pred CCCCCCCc----cccccEEEecCccc
Confidence 57887775 34899999987543
No 9
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=99.85 E-value=1.6e-20 Score=174.66 Aligned_cols=200 Identities=20% Similarity=0.307 Sum_probs=121.0
Q ss_pred eeEEecccccccccCCCCCCCCCCCCCccCChhhHH-HHHHHHHhhCCCcEEEEcccccChhhHHHHHHHHhhhcCCcEE
Q 013259 30 ITCTTFNILAPIYKRLSNEDQNCRESDCRAYWFGRN-QRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGYVNF 108 (447)
Q Consensus 30 lrV~T~NV~~~~~~~~~~~~~~~~~~~~~~~~~~R~-~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~~ 108 (447)
|||+||||.+. + .|. +.+.++|.+++||||||||++.....+. +...||..+
T Consensus 1 mki~swNVNgi------------r---------~~~~~~~~~~l~~~~~DIiclQEtK~~~~~~~------~~~~gY~~~ 53 (250)
T PRK13911 1 MKLISWNVNGL------------R---------ACMTKGFMDFFNSVDADVFCIQESKMQQEQNT------FEFKGYFDF 53 (250)
T ss_pred CEEEEEEeCCh------------h---------HhhhhhHHHHHHhcCCCEEEEEeecccccccc------cccCCceEE
Confidence 69999999963 1 133 3688999999999999999976554331 233588766
Q ss_pred EecCCCCCCceEEEEEecCCceEeeeEEEEecCC-CCchhhhhhhcccccccccccCCCCCeEEEEEecccCCCCCCCch
Q 013259 109 KLARTNNRGDGLLTAVHKDYFRVVNYRDLLFNDF-GDRVAQLLHVELIDPFSQCRNGDLRQEILIVNTHLLFPHDSSLSL 187 (447)
Q Consensus 109 ~~~~~~~~~~G~ai~~rs~~~~i~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~g~~l~v~n~HL~~~~~~~~~~ 187 (447)
.......+..|+||++|.....+. ..+... .+..++.+. + .-+.++|+|+ |.|+.. ...
T Consensus 54 ~~~~~~kgy~GVAi~~k~~~~~v~----~~~~~~~~d~eGR~I~---------~----~~~~~~l~nv--Y~Pn~~-~~~ 113 (250)
T PRK13911 54 WNCAIKKGYSGVVTFTKKEPLSVS----YGINIEEHDKEGRVIT---------C----EFESFYLVNV--YTPNSQ-QAL 113 (250)
T ss_pred EEecccCccceEEEEEcCCchheE----EcCCCCcccccCCEEE---------E----EECCEEEEEE--EecCCC-CCC
Confidence 543333455699999665422221 111110 111122111 1 1236999999 777654 223
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCccCC--------------------chhHhhhhCCCcccccccccC
Q 013259 188 VRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRG--------------------HVYKFLRSQGFVSSYDTAHQY 247 (447)
Q Consensus 188 ~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s--------------------~~~~~l~~~g~~d~~~~~~~~ 247 (447)
.|..+-....+.+.++++.. ..+.|+|+|||||..+.. ..++.+...||+|+|+..++.
T Consensus 114 ~r~~~K~~~~~~~~~~l~~l-~~~~~~Ii~GD~Nva~~~~D~~~~~~~~~~~gf~~~er~~f~~~l~~gl~D~~R~~~p~ 192 (250)
T PRK13911 114 SRLSYRMSWEVEFKKFLKAL-ELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYPN 192 (250)
T ss_pred cchHHHHHHHHHHHHHHHhc-ccCCCEEEEccccCCCChhhccChhhcCCCCCcCHHHHHHHHHHHhcCCeehhhhhCCC
Confidence 36555544444444444433 245799999999987642 125556667999999998865
Q ss_pred CCCCCCceeecc---cCCCccccccceeccCcch
Q 013259 248 TDADAHKWVSHR---NHRGNICGVDFIWLLNPNK 278 (447)
Q Consensus 248 ~~~~~~tw~~~~---~~~~~~~rIDyI~~~~~~~ 278 (447)
.. ...||.+++ ...+...|||||++++...
T Consensus 193 ~~-~~yTww~~~~~~~~~n~g~RIDyilvs~~~~ 225 (250)
T PRK13911 193 KE-KAYTWWSYMQQARDKNIGWRIDYFLCSNPLK 225 (250)
T ss_pred CC-CCCccCCCcCCccccCCcceEEEEEEChHHh
Confidence 32 235665433 1223456999999976543
No 10
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=99.84 E-value=2.1e-20 Score=175.86 Aligned_cols=200 Identities=19% Similarity=0.309 Sum_probs=122.0
Q ss_pred eeEEecccccccccCCCCCCCCCCCCCccCChhhHHHHHHHHHhhCCCcEEEEcccccChhhHHHHHHHHhhhcCCcEEE
Q 013259 30 ITCTTFNILAPIYKRLSNEDQNCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGYVNFK 109 (447)
Q Consensus 30 lrV~T~NV~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~~~ 109 (447)
|||+||||++. + .+...++++|...+||||||||+......+. ...+...||..++
T Consensus 1 mri~t~Ni~g~------------~---------~~~~~~~~~l~~~~~DIi~LQE~~~~~~~~~---~~~~~~~g~~~~~ 56 (254)
T TIGR00195 1 MKIISWNVNGL------------R---------ARLHKGLAWLKENQPDVLCLQETKVQDEQFP---LEPFHKEGYHVFF 56 (254)
T ss_pred CEEEEEEcCcH------------H---------HhHHHHHHHHHhcCCCEEEEEecccchhhCC---HHHhhcCCcEEEE
Confidence 79999999852 1 1345689999999999999999964332221 2333446887765
Q ss_pred ecCCCCCCceEEEEEecCCceEeeeEEEEecCCCCchhhhhhhcccccccccccCCCCCeEEEEEecccCCCC--CCCch
Q 013259 110 LARTNNRGDGLLTAVHKDYFRVVNYRDLLFNDFGDRVAQLLHVELIDPFSQCRNGDLRQEILIVNTHLLFPHD--SSLSL 187 (447)
Q Consensus 110 ~~~~~~~~~G~ai~~rs~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~v~n~HL~~~~~--~~~~~ 187 (447)
... ....|+||++|...+.+.. .+.... .+..+..+. +.. ..+.++|+|+..... .....
T Consensus 57 ~~~--~g~~Gvailsr~~~~~~~~--~~~~~~-~~~~~r~i~---------~~~----~~~~l~~~~~p~~~~~~~~~~~ 118 (254)
T TIGR00195 57 SGQ--KGYSGVAIFSKEEPLSVRR--GFGVEE-EDAEGRIIM---------AEF----DSFLVINGYFPNGSRDDSEKLP 118 (254)
T ss_pred ecC--CCcceEEEEEcCCcceEEE--CCCCcc-cccCCCEEE---------EEE----CCEEEEEEEccCCCCCCCccHH
Confidence 533 4456999996543222211 111111 011111111 111 248999998854211 11223
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCccCC--------------------chhHhhhhCCCcccccccccC
Q 013259 188 VRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRG--------------------HVYKFLRSQGFVSSYDTAHQY 247 (447)
Q Consensus 188 ~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s--------------------~~~~~l~~~g~~d~~~~~~~~ 247 (447)
.|..+...+.+.+..+.. .+.|+|+|||||..+.. ..++.+...|++|+|+..++.
T Consensus 119 ~r~~~~~~l~~~~~~~~~----~~~pvIi~GDfN~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~l~~~~l~D~~r~~~~~ 194 (254)
T TIGR00195 119 YKLQWLEALQNYLEKLVD----KDKPVLICGDMNIAPTEIDLHSPDENRNHTGFLPEEREWLDRLLEAGLVDTFRKFNPD 194 (254)
T ss_pred HHHHHHHHHHHHHHHHHh----cCCcEEEEeecccCCChhhccChhhcCCCcCcChHHHHHHHHHHHcCCEeeecccCCC
Confidence 466666666666666533 46799999999998864 246777778999999887764
Q ss_pred CCCCCCceeecccC---CCccccccceeccCcc
Q 013259 248 TDADAHKWVSHRNH---RGNICGVDFIWLLNPN 277 (447)
Q Consensus 248 ~~~~~~tw~~~~~~---~~~~~rIDyI~~~~~~ 277 (447)
....||..++.. .+...||||||+++..
T Consensus 195 --~~~~T~~~~~~~~~~~~~g~RID~i~~s~~~ 225 (254)
T TIGR00195 195 --EGAYSWWDYRTKARDRNRGWRIDYFLVSEPL 225 (254)
T ss_pred --CCCCcccCCcCCccccCCceEEEEEEECHHH
Confidence 235677654421 1235699999996543
No 11
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.83 E-value=4.1e-20 Score=174.04 Aligned_cols=201 Identities=20% Similarity=0.306 Sum_probs=119.1
Q ss_pred eeEEecccccccccCCCCCCCCCCCCCccCChhhHHHHH-HHHHhhCCCcEEEEcccccChhhHHHHHHHHhhhcCCcEE
Q 013259 30 ITCTTFNILAPIYKRLSNEDQNCRESDCRAYWFGRNQRI-LDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGYVNF 108 (447)
Q Consensus 30 lrV~T~NV~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~i-~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~~ 108 (447)
|||+||||+... .+.+.+ +++|.+.+||||||||+......+ ....+...||.++
T Consensus 1 lri~t~Nv~g~~---------------------~~~~~~~~~~l~~~~~DIv~LQE~~~~~~~~---~~~~~~~~g~~~~ 56 (255)
T TIGR00633 1 MKIISWNVNGLR---------------------ARLHKLFLDWLKEEQPDVLCLQETKVADEQF---PAELFEELGYHVF 56 (255)
T ss_pred CEEEEEecccHH---------------------HHhhccHHHHHHhcCCCEEEEEeccCchhhC---CHhHhccCCceEE
Confidence 699999999631 134555 899999999999999996432111 1222344688776
Q ss_pred EecCCCCCCceEEEEEecCCceEeeeEE-EEecCCCCchhhhhhhcccccccccccCCCCCeEEEEEecccCCCC--CCC
Q 013259 109 KLARTNNRGDGLLTAVHKDYFRVVNYRD-LLFNDFGDRVAQLLHVELIDPFSQCRNGDLRQEILIVNTHLLFPHD--SSL 185 (447)
Q Consensus 109 ~~~~~~~~~~G~ai~~rs~~~~i~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~v~n~HL~~~~~--~~~ 185 (447)
+.........|+||+ ++ +++..... +.... .+..+..+. ...+.+.|+++|+..+.. ...
T Consensus 57 ~~~~~~~~~~G~ail--sr-~~~~~~~~~~~~~~-~~~~~r~l~-------------~~~~~~~i~~vy~p~~~~~~~~~ 119 (255)
T TIGR00633 57 FHGAKSKGYSGVAIL--SK-VEPLDVRYGFGGEE-HDEEGRVIT-------------AEFDGFTVVNVYVPNGGSRGLER 119 (255)
T ss_pred EeecccCCcceEEEE--Ec-CCcceEEECCCCCc-ccCCCcEEE-------------EEECCEEEEEEEccCCCCCCchh
Confidence 654433345799999 44 34443221 11111 011111110 112469999998854321 111
Q ss_pred chhhHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCccCC--------------------chhHhhhhCCCcccccccc
Q 013259 186 SLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRG--------------------HVYKFLRSQGFVSSYDTAH 245 (447)
Q Consensus 186 ~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s--------------------~~~~~l~~~g~~d~~~~~~ 245 (447)
...|..+...+.+.+.+... .+.|+|+|||||+.+.. ..++.+...|+.|+|+..+
T Consensus 120 ~~~r~~~~~~l~~~~~~~~~----~~~~~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~ 195 (255)
T TIGR00633 120 LEYKLQFWDALFQYYEKELD----AGKPVIICGDMNVAHTEIDLGNPKENKGNAGFTPEEREWFDELLEAGLVDTFRHFN 195 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHh----cCCcEEEEeecccCCChHHccChhhcCCCCCcCHHHHHHHHHHHHcCCEecchhhC
Confidence 23466666666665544322 46699999999997642 2366666789999998776
Q ss_pred cCCCCCCCceeeccc---CCCccccccceeccCc
Q 013259 246 QYTDADAHKWVSHRN---HRGNICGVDFIWLLNP 276 (447)
Q Consensus 246 ~~~~~~~~tw~~~~~---~~~~~~rIDyI~~~~~ 276 (447)
+... ...||...+. ..+...||||||+++.
T Consensus 196 ~~~~-~~~T~~~~~~~~~~~~~~~rID~i~~s~~ 228 (255)
T TIGR00633 196 PDTE-GAYTWWDYRSGARDRNRGWRIDYFLVSEP 228 (255)
T ss_pred CCCC-CcCcCcCCccCccccCCceEEEEEEECHH
Confidence 5432 2456665442 1123468999999643
No 12
>PRK05421 hypothetical protein; Provisional
Probab=99.79 E-value=1.4e-18 Score=163.74 Aligned_cols=154 Identities=19% Similarity=0.095 Sum_probs=89.7
Q ss_pred CCceeEEecccccccccCCCCCCCCCCCCCccCChhhHHHHHHHHHhhCCCcEEEEcccccChhhHHHHHHHHhhhcCCc
Q 013259 27 QPCITCTTFNILAPIYKRLSNEDQNCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGYV 106 (447)
Q Consensus 27 ~~~lrV~T~NV~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~ 106 (447)
.++||||||||+... .. +....++.| ..+|||||||||+... ... ......++.
T Consensus 41 ~~~lri~t~NI~~~~------------~~--------~~~~~l~~l-~~~~DiI~LQEv~~~~-~~~----~~~~~~~~~ 94 (263)
T PRK05421 41 EERLRLLVWNIYKQQ------------RA--------GWLSVLKNL-GKDADLVLLQEAQTTP-ELV----QFATANYLA 94 (263)
T ss_pred CCceeEEEEEccccc------------cc--------cHHHHHHHh-ccCCCEEEEEecccCc-chH----HHhhcccch
Confidence 457899999999631 00 123455555 8899999999996432 111 222222333
Q ss_pred EEE--ecCCCCCCceEEEEEecCCceEeeeEEEEecCCCCchhhhhhhcccccccccccCC-CCCeEEEEEecccCCCCC
Q 013259 107 NFK--LARTNNRGDGLLTAVHKDYFRVVNYRDLLFNDFGDRVAQLLHVELIDPFSQCRNGD-LRQEILIVNTHLLFPHDS 183 (447)
Q Consensus 107 ~~~--~~~~~~~~~G~ai~~rs~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~g~~l~v~n~HL~~~~~~ 183 (447)
+.+ ........+|+||+ |+ +|+.....+........ .......+.+.. +++.+.|+||||.++..
T Consensus 95 ~~~~~~~~~~~~~~GvaiL--SR-~pi~~~~~~~~~~~~~~--------~~r~~l~a~~~~~~g~~l~v~ntHl~~~~~- 162 (263)
T PRK05421 95 ADQAPAFVLPQHPSGVMTL--SK-AHPVYCCPLREREPWLR--------LPKSALITEYPLPNGRTLLVVNIHAINFSL- 162 (263)
T ss_pred HHhccccccCCCccceeEe--ee-cccceeeccCCCCcccc--------CcceeEEEEEEeCCCCEEEEEEECccccCc-
Confidence 222 11123346799999 88 78876544411111000 000111122222 45679999999965321
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCccCC
Q 013259 184 SLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRG 226 (447)
Q Consensus 184 ~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s 226 (447)
....|..|+..+.+.+.. ...|+|||||||+.+..
T Consensus 163 -~~~~r~~q~~~l~~~~~~-------~~~p~Il~GDFN~~~~~ 197 (263)
T PRK05421 163 -GVDVYSKQLEPIGDQIAH-------HSGPVILAGDFNTWSRK 197 (263)
T ss_pred -ChHHHHHHHHHHHHHHHh-------CCCCEEEEcccccCccc
Confidence 235588888888777654 35699999999997643
No 13
>PTZ00297 pantothenate kinase; Provisional
Probab=99.75 E-value=2e-17 Score=184.76 Aligned_cols=220 Identities=15% Similarity=0.205 Sum_probs=129.2
Q ss_pred CceeEEecccccccccCCCCCCCCCCCCCccCChhhHHHHHHHHHhhC-CCcEEEEcccccCh---------hhHHHHHH
Q 013259 28 PCITCTTFNILAPIYKRLSNEDQNCRESDCRAYWFGRNQRILDWLLYE-RSSIICLQEFWVGN---------EELVDMYE 97 (447)
Q Consensus 28 ~~lrV~T~NV~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~i~~~I~~~-~~DII~LQEv~~~~---------~~~~~~l~ 97 (447)
..||||||||+.+. . .+. .| ..+++...|... +|||||||||.... ..+...+.
T Consensus 9 ~~l~VlTyNv~~~~-----~---~~~------~~--~~~ri~~~i~~l~~~DIv~lQEvf~~~~~~~~~~~~~~~~~~~~ 72 (1452)
T PTZ00297 9 AQARVLSYNFNILP-----R---GCG------GF--QHERIETFLASVDAYDVVLLQEVYAASVLPYFLQKQLCFQKMLV 72 (1452)
T ss_pred CceEEEEEEccccC-----C---Ccc------cc--cHHHHHHHHHhccCCCEEEEecccccccccccccccchhhHHHH
Confidence 47999999998641 0 011 11 247777788884 78999999996321 11344556
Q ss_pred HHhhhcCCcEEEecCCCC----------CCceEEEEEecCCceEeeeEEEEecCCCCchhhhhhhcccccccccccCC--
Q 013259 98 KRLSDAGYVNFKLARTNN----------RGDGLLTAVHKDYFRVVNYRDLLFNDFGDRVAQLLHVELIDPFSQCRNGD-- 165 (447)
Q Consensus 98 ~~l~~~gy~~~~~~~~~~----------~~~G~ai~~rs~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-- 165 (447)
..+...||.++...+... ...|+||+ || |||.....+.++........ ..+.+..+.+..
T Consensus 73 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~AIL--SR-~PI~~~~~~~l~~~~~~~~~-----~~RG~L~a~I~vp~ 144 (1452)
T PTZ00297 73 DELKARGFHHYVISKQPSYLTMLRYNVCSDNGLIIA--SR-FPIWQRGSYTFRNHERGEQS-----VRRGCLFAEVEVPL 144 (1452)
T ss_pred HHHHhcCCceeEeecCccccccccCccccCCEEEEE--EC-CChhhceeeecCcccccccc-----cccceEEEEEEccc
Confidence 667677888776544331 45699999 99 99999999888753211000 000111123322
Q ss_pred ---CCCeEEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHHHc-----CCCCCcEEEeecCCCc----c----CCchh
Q 013259 166 ---LRQEILIVNTHLLFPHDSSLSLVRLHQVYKILQHVESYQKEH-----NLKPIPIILCGDWNGS----K----RGHVY 229 (447)
Q Consensus 166 ---~g~~l~v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~~~~~~~-----~~~~~pvIl~GDFN~~----p----~s~~~ 229 (447)
+++.+.|+||||.+..+ ...|.+|+..+.++++...... ...+.|+|||||||+. + .+..|
T Consensus 145 ~~g~~~~v~v~~tHL~~~~~---~~~R~~Q~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN~~~~~~~~~~~~s~e~ 221 (1452)
T PTZ00297 145 AEGGSQRIVFFNVHLRQEDS---LPSTSSQVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNINGIDPHNGGHPTKRF 221 (1452)
T ss_pred cCCCCceEEEEEeCCCCCCC---cchHHHHHHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCCCccccccccCCccHHH
Confidence 23589999999976432 2348889998888877522211 1245699999999965 2 33455
Q ss_pred Hhhh------hCCCcccccccccCCCCCCC--ceeecccC----CCccccccceecc
Q 013259 230 KFLR------SQGFVSSYDTAHQYTDADAH--KWVSHRNH----RGNICGVDFIWLL 274 (447)
Q Consensus 230 ~~l~------~~g~~d~~~~~~~~~~~~~~--tw~~~~~~----~~~~~rIDyI~~~ 274 (447)
+.|. ..++.+.+...+....++++ +|.....+ .....||||||++
T Consensus 222 ~~ml~~l~~~~~~l~dv~~~~~~~~~~T~p~~~~fP~~~p~~~~~~~~~riD~Ifv~ 278 (1452)
T PTZ00297 222 QELLNELQDLGSGVREVIYDETGQHPPTRPPILFFPEQSKLERYSSTPQRQDYFFVT 278 (1452)
T ss_pred HHHHHHhhhccccHhHHhHhhcCCCCCCCCccccccccCccccccCCCcceeEEEEe
Confidence 4443 22455555444433222222 22121111 1112489999965
No 14
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.74 E-value=1.6e-16 Score=148.57 Aligned_cols=169 Identities=15% Similarity=0.091 Sum_probs=106.0
Q ss_pred CceeEEecccccccccCCCCCCCCCCCCCccCChhhHHHHHHHHHhhCCCcEEEEcccccChhhHHHHHHHHhhh---cC
Q 013259 28 PCITCTTFNILAPIYKRLSNEDQNCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSD---AG 104 (447)
Q Consensus 28 ~~lrV~T~NV~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~---~g 104 (447)
..|||+||||+.+. +....|..|...|++.|+ .+|||++|||...+......+...|.. .+
T Consensus 16 ~~l~I~SfNIr~fg--------------d~k~~~~~r~~~i~~il~--~~DIiglQEV~d~q~~~l~~ll~~Ln~~~~~~ 79 (276)
T smart00476 16 ASLRICAFNIQSFG--------------DSKMSNATLMSIIVKILS--RYDIALVQEVRDSDLSAVPKLMDQLNSDSPNT 79 (276)
T ss_pred CcEEEEEEECcccC--------------CccccHHHHHHHHHHHhc--cCCEEEEEEeecchhHHHHHHHHHHhhcCCCC
Confidence 36999999999641 223468899999999998 789999999964332222222222322 36
Q ss_pred CcEEEecCCCC--CCceEEEEEecCCceEeeeEEEEecCCCCchhhhhhhcccccccccccCC-CCCeEEEEEecccCCC
Q 013259 105 YVNFKLARTNN--RGDGLLTAVHKDYFRVVNYRDLLFNDFGDRVAQLLHVELIDPFSQCRNGD-LRQEILIVNTHLLFPH 181 (447)
Q Consensus 105 y~~~~~~~~~~--~~~G~ai~~rs~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~g~~l~v~n~HL~~~~ 181 (447)
|.++..++.+. .++-.+++||++++.+++...+ ++.+....... .....++..+... .++.|.++|+|+..
T Consensus 80 Y~~v~s~r~gr~~~~E~~a~~Yr~drv~v~~~~~f--~d~~~~~~~~F--~ReP~~~~F~~~~~~~~~F~li~~H~~p-- 153 (276)
T smart00476 80 YSYVSSEPLGRNSYKEQYLFLYRSDLVSVLDSYLY--DDGCECGNDVF--SREPFVVKFSSPSTAVKEFVIVPLHTTP-- 153 (276)
T ss_pred ceEEecCCCCCCCCCEEEEEEEecceEEEccccee--cCCCCCccccc--cccceEEEEEeCCCCCccEEEEEecCCh--
Confidence 77776554432 3467999999999998877554 44221000000 0001111122222 34689999999954
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCccC
Q 013259 182 DSSLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKR 225 (447)
Q Consensus 182 ~~~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~ 225 (447)
..+.+++..|.+.+....+++ ...|+||+||||+.+.
T Consensus 154 -----~~~~~e~~aL~~v~~~~~~~~--~~~~villGDFNa~~~ 190 (276)
T smart00476 154 -----EAAVAEIDALYDVYLDVRQKW--GTEDVIFMGDFNAGCS 190 (276)
T ss_pred -----HHHHHHHHHHHHHHHHHHHhh--ccCCEEEEccCCCCCC
Confidence 235667777776555544443 5789999999999764
No 15
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.71 E-value=8.2e-17 Score=149.45 Aligned_cols=150 Identities=21% Similarity=0.236 Sum_probs=79.8
Q ss_pred HHHHHHHHHhhCCCcEEEEcccccChhhHHHHHHHHhhhcCC-cEEEecCCCC----CCceEEEEEecCCceEeeeEEEE
Q 013259 64 RNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGY-VNFKLARTNN----RGDGLLTAVHKDYFRVVNYRDLL 138 (447)
Q Consensus 64 R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy-~~~~~~~~~~----~~~G~ai~~rs~~~~i~~~~~~~ 138 (447)
+...|++.|...+||||||||++. ......+...+....+ .......... ...|++|++|.............
T Consensus 17 ~~~~i~~~i~~~~~Dii~LQEv~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~~~~~~~~~ 94 (249)
T PF03372_consen 17 KRREIAQWIAELDPDIIALQEVRN--DDLSELLEEQLRGYLGYYGSFWPGNSPPSDAGGYGVAILSRSPIFSSVSYVFSL 94 (249)
T ss_dssp HHHHHHHHHHHHT-SEEEEEEEES--HHHHHHHHHHHHTCTTHEEEEEETSSSTTCSSSEEEEEEESSCCCEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEecchh--hhhhhhhhhhcccccccccceeccccccccccCceEEEEEcccccccccccccc
Confidence 456699999999999999999952 2333444445544333 3333222221 35799999776532222222221
Q ss_pred ecCCCCchhhhhhhcccccccccccCCCCCeEEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEee
Q 013259 139 FNDFGDRVAQLLHVELIDPFSQCRNGDLRQEILIVNTHLLFPHDSSLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCG 218 (447)
Q Consensus 139 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~G 218 (447)
.................. ......+.+|+|+|+|+.+ ....|..+...+.+.+....+.. ...|+||||
T Consensus 95 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~v~~~H~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iv~G 163 (249)
T PF03372_consen 95 FSKPGIRIFRRSSKSKGI----VPVSINGKPITVVNVHLPS-----SNDERQEQWRELLARIQKIYADN--PNEPVIVMG 163 (249)
T ss_dssp ESSSTTCEEEEEEEEEEE----EEEEEETEEEEEEEEETTS-----HHHHHHHHHHHHHHHHHHHHHTS--SCCEEEEEE
T ss_pred cccccccccccccccccc----ccccccceEEEeeeccccc-----cchhhhhhhhhhhhhhhhccccc--ccceEEEEe
Confidence 211111110000000000 0000016789999999955 22345555667777777666532 233799999
Q ss_pred cCCCccCC
Q 013259 219 DWNGSKRG 226 (447)
Q Consensus 219 DFN~~p~s 226 (447)
|||+.+.+
T Consensus 164 DfN~~~~~ 171 (249)
T PF03372_consen 164 DFNSRPDS 171 (249)
T ss_dssp E-SS-BSS
T ss_pred ecccCCcc
Confidence 99998865
No 16
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=99.68 E-value=1.2e-16 Score=154.48 Aligned_cols=202 Identities=25% Similarity=0.419 Sum_probs=135.5
Q ss_pred CCCCceeEEecccccccccCCCCCCCCCCCCCccCChhhHHHHHHHHHhhCCCcEEEEcccccChhhHHHHHHHHhhhcC
Q 013259 25 QQQPCITCTTFNILAPIYKRLSNEDQNCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAG 104 (447)
Q Consensus 25 ~~~~~lrV~T~NV~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~g 104 (447)
++..+++|+|||++++.|.....+. +| ......|.+|...+.+.|...+||+|||||| +.+.+.+...|...|
T Consensus 15 ~~~~~~~v~s~n~l~~~~~~~~~~~-~~--~~~~~~w~~r~~~~~~ei~~~~ad~icLqev----~~~~~~~~p~l~~~g 87 (361)
T KOG0620|consen 15 PQGETFTVLSYNILSQLYATSKLYM-YC--PSWALSWEYRRQLLLEEILNYNADILCLQEV----DRYHDFFSPELEASG 87 (361)
T ss_pred cCCceEEeechhhhhhhhcccCCCc-cc--chhhccHHHHHHHHHHHHhCCCcceeecchh----hHHHHHccchhhhcC
Confidence 3344899999999998877766543 33 3456789999999999999999999999999 467788888888889
Q ss_pred CcEEEecCC------CCCCceEEEEEecCCceEeeeEEEEecCCCC-----chhhhhh---hccccc-ccccccCCCCCe
Q 013259 105 YVNFKLART------NNRGDGLLTAVHKDYFRVVNYRDLLFNDFGD-----RVAQLLH---VELIDP-FSQCRNGDLRQE 169 (447)
Q Consensus 105 y~~~~~~~~------~~~~~G~ai~~rs~~~~i~~~~~~~~~~~~~-----~~~~~~~---l~~~~~-~~~~~~~~~g~~ 169 (447)
|...+..++ .....||||+++..+|.++....+.++.... ....... +..... ++.+... .+..
T Consensus 88 Y~g~~~~k~~~~~~~~~~~dGcaiffk~s~f~li~~~~i~~n~~~~~~~~~~~~~~~~~~~~d~~~~~l~~L~~~-~~~~ 166 (361)
T KOG0620|consen 88 YSGIFIEKTRMGEVELEKIDGCAIFFKPSLFQLIHSSAIELNQLALSRLPPNIAQLNRLTTLDNSGNKLVSLKAE-LGNM 166 (361)
T ss_pred CcceeecccccchhhcccCceeeeeecchHHhhhhhhhhhhHHHHHhhcchhHHHHHhhhccccccchhhhhhhh-cCCc
Confidence 999887764 4557899999999999998766665543321 1110000 000000 0001111 1222
Q ss_pred EE----EEEecccCCCCCCCchhhHHHHHHHHHHHH----HHHHH-------cCCCCCcEEEeecCCCccCCchhHhhhh
Q 013259 170 IL----IVNTHLLFPHDSSLSLVRLHQVYKILQHVE----SYQKE-------HNLKPIPIILCGDWNGSKRGHVYKFLRS 234 (447)
Q Consensus 170 l~----v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~----~~~~~-------~~~~~~pvIl~GDFN~~p~s~~~~~l~~ 234 (447)
+. ++|+|+.+.. .....++-|+..+...+. +.... .+....|+++|||||+.|.++.|..+..
T Consensus 167 ~~~~~~~~n~h~~~~~--~~~~vkl~qv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~gdfNs~p~~~v~~~~~~ 244 (361)
T KOG0620|consen 167 VSLPHLLLNTHILWDL--PYEDVKLFQVLTLLLELAPLSPEILKIYREGNLATRIASFPLLLCGDFNSTPLSPVYALLAS 244 (361)
T ss_pred eeeccccccceeccCC--CccchHHHHHHHHhhcccccchhhhhhhccccccccccccceeeeccccCCCCccceeeccc
Confidence 22 4788888744 445668888887766532 11110 1224689999999999999998888744
Q ss_pred CC
Q 013259 235 QG 236 (447)
Q Consensus 235 ~g 236 (447)
.+
T Consensus 245 ~~ 246 (361)
T KOG0620|consen 245 GI 246 (361)
T ss_pred CC
Confidence 33
No 17
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=99.63 E-value=4.3e-15 Score=132.30 Aligned_cols=207 Identities=15% Similarity=0.137 Sum_probs=132.9
Q ss_pred CceeEEecccccccccCCCCCCCCCCCCCccCChhhHHHHHHHHHhhCCCcEEEEcccccChhhHHHHHHHHhhhcCCcE
Q 013259 28 PCITCTTFNILAPIYKRLSNEDQNCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGYVN 107 (447)
Q Consensus 28 ~~lrV~T~NV~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~ 107 (447)
.-+.++||||... +.. ....|+++++..|+-++|||||||||- +...+.+.+ +. .-|..
T Consensus 98 ~~~S~~~WnidgL-----dln-----------~l~~RMrAv~H~i~l~sPdiiflQEV~---p~~y~~~~K-~~-s~y~i 156 (349)
T KOG2756|consen 98 SMFSLITWNIDGL-----DLN-----------NLSERMRAVCHYLALYSPDVIFLQEVI---PPYYSYLKK-RS-SNYEI 156 (349)
T ss_pred cEEEEEEeecccc-----ccc-----------hHHHHHHHHHHHHHhcCCCEEEEeecC---chhhHHHHH-hh-hheeE
Confidence 4578888888863 211 123589999999999999999999993 233455555 22 13444
Q ss_pred EEecCCCCCCceEEEEEecCCceEeeeEEEEecCCCCchhhhhhhcccccccccccCCCCCeEEEEEecccCCCCCCCch
Q 013259 108 FKLARTNNRGDGLLTAVHKDYFRVVNYRDLLFNDFGDRVAQLLHVELIDPFSQCRNGDLRQEILIVNTHLLFPHDSSLSL 187 (447)
Q Consensus 108 ~~~~~~~~~~~G~ai~~rs~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~v~n~HL~~~~~~~~~~ 187 (447)
++. .....++.+++.+++ +.+.+...+.|+... . .+....+...+.|.++.+.|+||.++.. ..+
T Consensus 157 ~~~--~~~~~~~~~~l~~s~-~~Vks~~~i~F~NS~---M-------~R~L~I~Ev~v~G~Kl~l~tsHLEStr~--h~P 221 (349)
T KOG2756|consen 157 ITG--HEEGYFTAIMLKKSR-VKVKSQEIIPFPNSK---M-------MRNLLIVEVNVSGNKLCLMTSHLESTRG--HAP 221 (349)
T ss_pred EEe--ccceeeeeeeeehhh-cCccccceeccCcch---h-------hheeEEEEEeecCceEEEEeccccCCCC--CCh
Confidence 443 222334666666666 888877777776532 1 1111224556678899999999998653 345
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCccCCchhHhhhhCCCcccccccccCCCCCCCceeecccC--CCc-
Q 013259 188 VRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDTAHQYTDADAHKWVSHRNH--RGN- 264 (447)
Q Consensus 188 ~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~g~~d~~~~~~~~~~~~~~tw~~~~~~--~~~- 264 (447)
.|..|....++.++...+.. ++..||++||+|--.. ..-+.=...+++|+|..+.... ....||....+. .|.
T Consensus 222 ~r~~qF~~~~~k~~EaIe~l--PnA~ViFGGD~NlrD~-ev~r~~lPD~~vDvWE~lg~p~-~~~FTwDT~~N~nl~G~~ 297 (349)
T KOG2756|consen 222 ERMNQFKMVLKKMQEAIESL--PNATVIFGGDTNLRDR-EVTRCGLPDNIVDVWEFLGKPK-HCQFTWDTQMNSNLGGTA 297 (349)
T ss_pred HHHHHHHHHHHHHHHHHHhC--CCceEEEcCcccchhh-hcccCCCCchHHHHHHHhCCCC-cCceeeecccCcccchhH
Confidence 68888887777777766654 7788999999997322 2222112447788888876332 345778765532 121
Q ss_pred --cccccceecc
Q 013259 265 --ICGVDFIWLL 274 (447)
Q Consensus 265 --~~rIDyI~~~ 274 (447)
..|+|.||.+
T Consensus 298 a~k~RfDRi~~r 309 (349)
T KOG2756|consen 298 ACKLRFDRIFFR 309 (349)
T ss_pred HHHHHHHHHhhh
Confidence 2388998874
No 18
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.54 E-value=4.5e-14 Score=129.74 Aligned_cols=197 Identities=14% Similarity=0.055 Sum_probs=109.0
Q ss_pred CceeEEecccccccccCCCCCCCCCCCCCccCChhhHHHHHHHHHhhC-CCcEEEEcccccChhh------HHHH-----
Q 013259 28 PCITCTTFNILAPIYKRLSNEDQNCRESDCRAYWFGRNQRILDWLLYE-RSSIICLQEFWVGNEE------LVDM----- 95 (447)
Q Consensus 28 ~~lrV~T~NV~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~i~~~I~~~-~~DII~LQEv~~~~~~------~~~~----- 95 (447)
..++|+|||+++... ....+|.. .+...|... ++||+++||+..-... ....
T Consensus 23 ~~~~~~twn~qg~s~-------------~~~~kw~~---~v~~l~~~~~~~DIla~QEags~p~~a~~~~~~~~~~g~~~ 86 (271)
T PRK15251 23 EDYKVATWNLQGSSA-------------STESKWNV---NVRQLLSGENPADILMVQEAGSLPSSAVPTGRHVQPGGVGI 86 (271)
T ss_pred ccceEEEeecCCCCC-------------CChhhhhh---hHHHHhcCCCCCCEEEEEecCCCcccccccccccccccccc
Confidence 359999999996311 11123432 355566654 6999999999411100 0000
Q ss_pred -HHH---Hhh---hcCCcEEEecCCC--CCCceEEEEEecCCceEeeeEEEEecCCCCchhhhhhhcccccccccccCCC
Q 013259 96 -YEK---RLS---DAGYVNFKLARTN--NRGDGLLTAVHKDYFRVVNYRDLLFNDFGDRVAQLLHVELIDPFSQCRNGDL 166 (447)
Q Consensus 96 -l~~---~l~---~~gy~~~~~~~~~--~~~~G~ai~~rs~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 166 (447)
..+ .+. +-++.|+|..+-. ....|+||+ || ++..+...+.++....+... ..++ +
T Consensus 87 ~v~ey~w~l~~~srpgm~YiY~~aiD~~ggr~glAIl--Sr-~~a~~~~~l~~p~~~~Rpil-----------gi~i--~ 150 (271)
T PRK15251 87 PIDEYTWNLGTRSRPNQVYIYYSRVDVGANRVNLAIV--SR-RRADEVIVLRPPTVASRPII-----------GIRI--G 150 (271)
T ss_pred CcccEEEEccCccCCCceEEEEecccCCCCceeEEEE--ec-ccccceEEecCCCCcccceE-----------EEEe--c
Confidence 000 010 1234444443322 344699999 88 67766665554422211111 1222 2
Q ss_pred CCeEEEEEecccCCCCCCCchhhHHHHHHHHHHHH-HHHHHcCCCCCcEEEeecCCCccCCchhHhhhhCCCcccccccc
Q 013259 167 RQEILIVNTHLLFPHDSSLSLVRLHQVYKILQHVE-SYQKEHNLKPIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDTAH 245 (447)
Q Consensus 167 g~~l~v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~-~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~g~~d~~~~~~ 245 (447)
.+.++++|+.+.. ...|.++++.+.+... .. +..|++||||||..|++..+..+.+. +......
T Consensus 151 --~~~ffstH~~a~~----~~da~aiV~~I~~~f~~~~------~~~pw~I~GDFNr~P~sl~~~l~~~~-~~~~~~i-- 215 (271)
T PRK15251 151 --NDVFFSIHALANG----GTDAGAIVRAVHNFFRPNM------RHINWMIAGDFNRSPDRLESTLDTEH-LRNRVNI-- 215 (271)
T ss_pred --CeEEEEeeecCCC----CccHHHHHHHHHHHHhhcc------CCCCEEEeccCCCCCcchhhhhcchh-cccccEE--
Confidence 3799999997642 2337788888877775 21 45799999999999999866665321 2211111
Q ss_pred cCCCCCCCceeecccCCCccccccceeccCcchhh
Q 013259 246 QYTDADAHKWVSHRNHRGNICGVDFIWLLNPNKYR 280 (447)
Q Consensus 246 ~~~~~~~~tw~~~~~~~~~~~rIDyI~~~~~~~~~ 280 (447)
..++.+|++ ...+||||+..+.....
T Consensus 216 --v~p~~pT~~-------s~~~IDYiv~~~s~~~~ 241 (271)
T PRK15251 216 --VAPTEPTQR-------SGGTLDYAVTGNSNQTF 241 (271)
T ss_pred --eCCCCCCCC-------CCCeeEEEEecCccccc
Confidence 123334443 13479999986554433
No 19
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=99.38 E-value=5.1e-12 Score=128.07 Aligned_cols=255 Identities=13% Similarity=0.154 Sum_probs=151.4
Q ss_pred cCCCCceeEEecccccccccCCCCCC------CCCCCCCccCChhhHHHHHHHHHhhCCCcEEEEcccccCh----h--h
Q 013259 24 HQQQPCITCTTFNILAPIYKRLSNED------QNCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGN----E--E 91 (447)
Q Consensus 24 ~~~~~~lrV~T~NV~~~~~~~~~~~~------~~~~~~~~~~~~~~R~~~i~~~I~~~~~DII~LQEv~~~~----~--~ 91 (447)
....+.|||.+|||++.. +..+... ..|+...........+..++..|...++|||+|-|+.+.. . .
T Consensus 458 ~~v~G~LkiasfNVlNyf-~~~~~~g~~~~~~~d~rga~~~~e~~~Q~~k~v~ai~~ldaDV~GL~Eien~~~~~~s~~a 536 (798)
T COG2374 458 PDVGGSLKIASFNVLNYF-NKLSGDGGGASTFSDCRGANTTEEFARQRAKIVTAILTLDADVLGLMEIENNGYGTDSGDA 536 (798)
T ss_pred cccCceeeeeeeehhhhh-ccCCCCCCCccccccccCccchhHHHHHHHHHHHHHhhcchhhheeeeeeccCCCCCcHHH
Confidence 344678999999999742 1111111 1234444444566677889999999999999999996331 1 2
Q ss_pred ---HHHHHHHHhhhc-CCcEEEecCCC---CCCceEEEEEecCCceEeeeEEEEecCCCCchhhhhhhc-cccccccccc
Q 013259 92 ---LVDMYEKRLSDA-GYVNFKLARTN---NRGDGLLTAVHKDYFRVVNYRDLLFNDFGDRVAQLLHVE-LIDPFSQCRN 163 (447)
Q Consensus 92 ---~~~~l~~~l~~~-gy~~~~~~~~~---~~~~G~ai~~rs~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~ 163 (447)
....|.+.+..- -|.++...+.. ....+++++|+..+..+.....+.-.+.-..+.....-. ........+.
T Consensus 537 i~~lV~~lna~~G~~~~y~~v~p~~~~~lgtD~I~vg~iY~~~~V~~~g~~~~~~~~a~~~v~~~~~~n~R~~laqtF~~ 616 (798)
T COG2374 537 IAQLVNALNAKAGAGTRYAFVAPGRNGGLGTDAIRVGFIYKPSAVSLVGKAAIVDNDAFLGVGEIDDNNARPPLAQTFQD 616 (798)
T ss_pred HHHHHHHHHhhcCCCceEEEEecCccCCcCCCceeEEEEeccceEEecccccccccccccccccccccccCcchhhhhhh
Confidence 233333334333 35544433321 122478999998876666544332111111000000000 0000112344
Q ss_pred CCCCCeEEEEEecccCCCC------------CCCchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCccCCchhHh
Q 013259 164 GDLRQEILIVNTHLLFPHD------------SSLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRGHVYKF 231 (447)
Q Consensus 164 ~~~g~~l~v~n~HL~~~~~------------~~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~ 231 (447)
...+.+|+++..||.+... ..+...|.+|++.|..+++..... ..+.|++|.||||+...+.+++.
T Consensus 617 ~~~~ekfvvVvNHfkSKgs~~p~~gd~~dgQg~~~~~R~~~AqaL~~~la~~~~~--~~d~~~viLGD~N~y~~edpI~~ 694 (798)
T COG2374 617 LSGGEKFVVVVNHFKSKGSDCPVDGDTQDGQGNSNQTRVRAAQALAAFLATNPTG--KADADIVILGDFNDYAFEDPIQA 694 (798)
T ss_pred ccCCcEEEEEEeeecccCCCCCCcccccccccchhhHHHHHHHHHHHHHhhCccc--ccCCCEEEEeccchhhhccHHHH
Confidence 4567789999999987432 134667999999999999864322 25778999999999999999999
Q ss_pred hhhCCCcccccccccCCCCCCCceeecccCCCccccccceeccCcchhhhhhhhhh
Q 013259 232 LRSQGFVSSYDTAHQYTDADAHKWVSHRNHRGNICGVDFIWLLNPNKYRKLLKASW 287 (447)
Q Consensus 232 l~~~g~~d~~~~~~~~~~~~~~tw~~~~~~~~~~~rIDyI~~~~~~~~~~~~~~sw 287 (447)
|...|+...-...+.. ++.++|... |+...|||++++..-.++......|
T Consensus 695 l~~aGy~~l~~~~~~~--~~~YSY~f~----G~~gtLDhaLas~sl~~~v~~a~ew 744 (798)
T COG2374 695 LEGAGYMNLAARFHDA--GDRYSYVFN----GQSGTLDHALASASLAAQVSGATEW 744 (798)
T ss_pred HhhcCchhhhhhccCC--CCceEEEEC----CccchHhhhhhhhhhhhhccCceee
Confidence 9988876433333211 223333333 4466899999976655555444445
No 20
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.35 E-value=1.9e-12 Score=99.74 Aligned_cols=68 Identities=26% Similarity=0.304 Sum_probs=62.1
Q ss_pred HhhhhhHHHHhhhhcC-CCCCCcccHHHHHHHHHH-hccCCCCCCCCH-HHHHHHHHHcCCCCCceeehHHHHHHHh
Q 013259 300 RRASLTETDAFAFLKA-DNDGDYITYSGFCEALEQ-LNLTGHKHGLAD-EETKDLWVQADIDGNGVVDYKEFQQRIW 373 (447)
Q Consensus 300 ~~~~~~l~~~F~~~D~-~~~~G~i~~~el~~~l~~-~g~~~~~~~~~~-~~~~~~~~~~D~~~~g~i~~~EF~~~~~ 373 (447)
......|+.+|+.||+ +++ |+|+.+||+.+|.. +| ..+++ +++++||+.+|.|+||.|+|+||+.+|.
T Consensus 4 E~ai~~l~~~F~~fd~~~~~-g~i~~~ELk~ll~~elg-----~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~ 74 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGK-ESLTASEFQELLTQQLP-----HLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIG 74 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCC-CeECHHHHHHHHHHHhh-----hhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 3456789999999999 999 99999999999999 88 77888 9999999999999999999999997663
No 21
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.29 E-value=1.4e-11 Score=114.39 Aligned_cols=197 Identities=15% Similarity=0.081 Sum_probs=113.9
Q ss_pred CCCceeEEecccccccccCCCCCCCCCCCCCccCChhhHHHHHHHHHhhCCCcEEEEcccccChhhHHHHHHHHhhhcCC
Q 013259 26 QQPCITCTTFNILAPIYKRLSNEDQNCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGY 105 (447)
Q Consensus 26 ~~~~lrV~T~NV~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy 105 (447)
.+..++++++|+++.. . -...++..+...++|+|.+||.. ........ .+. ..|
T Consensus 85 ~~~~~~~l~~N~r~~n-----~----------------~~~k~Lsl~~~~~~D~v~~~E~~---~~~~~~~~-~l~-~~y 138 (309)
T COG3021 85 DQRLLWNLQKNVRFDN-----A----------------SVAKLLSLIQQLDADAVTTPEGV---QLWTAKVG-ALA-AQY 138 (309)
T ss_pred cchhhhhhhhhccccC-----c----------------CHHHHHHHHhhhCcchhhhHHHH---HHhHhHHH-HHH-HhC
Confidence 3567999999988631 1 14667777888889999999983 12222222 222 234
Q ss_pred cEEEecCCCCCCceEEEEEecCCceEeeeEEEEecCCCCchhhhhhhcccccccccccCCCCCeEEEEEeccc-CCCCCC
Q 013259 106 VNFKLARTNNRGDGLLTAVHKDYFRVVNYRDLLFNDFGDRVAQLLHVELIDPFSQCRNGDLRQEILIVNTHLL-FPHDSS 184 (447)
Q Consensus 106 ~~~~~~~~~~~~~G~ai~~rs~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~v~n~HL~-~~~~~~ 184 (447)
.++.....+....+.+++ +++.++...+.-..... .+.+. ........|..+.|++.|.. ++-.
T Consensus 139 P~~~~~~~~~~~~~~a~~--sr~~~~~~~~~e~~~~~-pk~~~----------~t~~~~~~g~~l~v~~lh~~~~~~~-- 203 (309)
T COG3021 139 PAFILCQHPTGVFTLAIL--SRRPCCPLTEAEPWLRL-PKSAL----------ATAYPLPDGTELTVVALHAVNFPVG-- 203 (309)
T ss_pred CceeecCCCCCeeeeeec--cccccccccccCccccC-Cccce----------eEEEEcCCCCEEEEEeeccccccCC--
Confidence 433322233356788888 66432321111111110 11111 11223446899999999996 4332
Q ss_pred CchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCccCCchhHhhhhCCCcccccccccCCCCCCCceeecccCCCc
Q 013259 185 LSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDTAHQYTDADAHKWVSHRNHRGN 264 (447)
Q Consensus 185 ~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~g~~d~~~~~~~~~~~~~~tw~~~~~~~~~ 264 (447)
....| +|...+.+.+.. -..|+|++||||+.|+|..++.+...+..+++...+. ....+|+..... -.
T Consensus 204 ~~~~~-~ql~~l~~~i~~-------~~gpvIlaGDfNa~pWS~~~~R~~~l~~~~~~~~aG~---~~~~~~p~~~~r-~~ 271 (309)
T COG3021 204 TDPQR-AQLLELGDQIAG-------HSGPVILAGDFNAPPWSRTAKRMAALGGLRAAPRAGL---WEVRFTPDERRR-AF 271 (309)
T ss_pred ccHHH-HHHHHHHHHHHc-------CCCCeEEeecCCCcchhHHHHHHHHhcccccchhccC---CccccCHHHHhh-cc
Confidence 22334 666666666655 3579999999999999999999877666665555541 122333333211 11
Q ss_pred cccccceeccC
Q 013259 265 ICGVDFIWLLN 275 (447)
Q Consensus 265 ~~rIDyI~~~~ 275 (447)
...|||||+++
T Consensus 272 g~PIDhvf~rg 282 (309)
T COG3021 272 GLPIDHVFYRG 282 (309)
T ss_pred CCCcceeeecC
Confidence 34699999976
No 22
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.29 E-value=1.3e-11 Score=104.60 Aligned_cols=80 Identities=29% Similarity=0.483 Sum_probs=70.4
Q ss_pred HHHHhHHHHHH--HhhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehH
Q 013259 289 EAVFGMFKCLL--RRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYK 366 (447)
Q Consensus 289 ~~v~~~~~~~~--~~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~ 366 (447)
.+++.++.... ....++++.+|+.||+|++ |+|+..||+.+|+.+| ..++++++++|++.+|.|+||.|+|+
T Consensus 75 ~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~d-G~Is~~eL~~vl~~lg-----e~~~deev~~ll~~~d~d~dG~i~~~ 148 (160)
T COG5126 75 PEFLTVMSVKLKRGDKEEELREAFKLFDKDHD-GYISIGELRRVLKSLG-----ERLSDEEVEKLLKEYDEDGDGEIDYE 148 (160)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhCCCCC-ceecHHHHHHHHHhhc-----ccCCHHHHHHHHHhcCCCCCceEeHH
Confidence 34555555555 3457899999999999999 9999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhc
Q 013259 367 EFQQRIWK 374 (447)
Q Consensus 367 EF~~~~~~ 374 (447)
||++.+..
T Consensus 149 eF~~~~~~ 156 (160)
T COG5126 149 EFKKLIKD 156 (160)
T ss_pred HHHHHHhc
Confidence 99977654
No 23
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.25 E-value=1.9e-11 Score=94.39 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=61.0
Q ss_pred HhhhhhHHHHhhhhc-CCCCCC-cccHHHHHHHHHH-----hccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 300 RRASLTETDAFAFLK-ADNDGD-YITYSGFCEALEQ-----LNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 300 ~~~~~~l~~~F~~~D-~~~~~G-~i~~~el~~~l~~-----~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
......+.++|+.|| +|++ | +|+.+||+.+|+. +| ...++++++.+|+.+|.|+||+|+|+||+.++
T Consensus 4 e~~~~~l~~aF~~fD~~dgd-G~~I~~~eL~~ll~~~~~~~lg-----~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li 77 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGD-KHKLKKSELKELINNELSHFLE-----EIKEQEVVDKVMETLDSDGDGECDFQEFMAFV 77 (88)
T ss_pred HHHHHHHHHHHHHhcccCCC-cCEECHHHHHHHHHHHhHHHhc-----CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 345678999999998 7999 9 5999999999999 88 77899999999999999999999999999665
No 24
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.24 E-value=2e-11 Score=89.49 Aligned_cols=61 Identities=30% Similarity=0.565 Sum_probs=53.3
Q ss_pred HHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHH----HHHHHHHcCCCCCceeehHHHHHHH
Q 013259 306 ETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEE----TKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 306 l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~----~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
|+++|+.+|+|++ |+|+.+||+.+++.++ ...++++ ++.+++.+|.|+||.|+|+||+.+|
T Consensus 2 l~~~F~~~D~d~~-G~i~~~el~~~~~~~~-----~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGD-GYISKEELRRALKHLG-----RDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSS-SEEEHHHHHHHHHHTT-----SHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCcc-CCCCHHHHHHHHHHhc-----ccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 6889999999999 9999999999999998 5554544 5556999999999999999999764
No 25
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.19 E-value=8.5e-11 Score=101.29 Aligned_cols=65 Identities=32% Similarity=0.550 Sum_probs=61.7
Q ss_pred hhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHh
Q 013259 303 SLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 373 (447)
Q Consensus 303 ~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~ 373 (447)
..+++++|+.||+|++ |+||.+||+.+|..+| .+++.++++.|++.+|.|+||.|+|+||+++|.
T Consensus 84 ~~el~eaF~~fD~d~~-G~Is~~el~~~l~~lg-----~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGD-GFISASELKKVLTSLG-----EKLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred HHHHHHHHHHHccCCC-CcCcHHHHHHHHHHhC-----CcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 4599999999999999 9999999999999999 999999999999999999999999999997664
No 26
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.12 E-value=1.9e-10 Score=90.13 Aligned_cols=70 Identities=17% Similarity=0.174 Sum_probs=57.6
Q ss_pred HhhhhhHHHHhhhhc-CCCCCC-cccHHHHHHHHHH-hccCCC-CCCCCHHHHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 300 RRASLTETDAFAFLK-ADNDGD-YITYSGFCEALEQ-LNLTGH-KHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 300 ~~~~~~l~~~F~~~D-~~~~~G-~i~~~el~~~l~~-~g~~~~-~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
......+.++|+.|| +|++ | +||.+||+.+|.. ++ +. ....++.+++++|+++|.|+||.|+|+||+.+|
T Consensus 6 e~a~~~~~~~F~~~dd~dgd-g~~Is~~EL~~ll~~~~~--~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~ 79 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGD-RYKLSKGELKELLQRELT--DFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLV 79 (93)
T ss_pred HHHHHHHHHHHHHHHccCCC-CCEECHHHHHHHHHHHhH--HhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 455678889999999 7899 8 5999999999976 22 00 034578899999999999999999999999665
No 27
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.09 E-value=2.3e-10 Score=88.39 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=59.6
Q ss_pred HhhhhhHHHHhhhhcC-CC-CCCcccHHHHHHHHHH---hccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 300 RRASLTETDAFAFLKA-DN-DGDYITYSGFCEALEQ---LNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 300 ~~~~~~l~~~F~~~D~-~~-~~G~i~~~el~~~l~~---~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
......|-.+|+.+|. |+ + |+|+.+||+.+|.. +| .++++++++++|+.+|.|++|+|+|+||+.+|
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~-g~Is~~EL~~~l~~~~~lg-----~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm 77 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDK-NTLSKKELKELIQKELTIG-----SKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFL 77 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCC-CEECHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHH
Confidence 3456678889999998 77 6 99999999999973 68 88999999999999999999999999999666
No 28
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.08 E-value=1.1e-10 Score=98.88 Aligned_cols=121 Identities=18% Similarity=0.212 Sum_probs=94.2
Q ss_pred HhhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHhccC---
Q 013259 300 RRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWKTT--- 376 (447)
Q Consensus 300 ~~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~~~~--- 376 (447)
..+..+++++|..+|+|++ |.|+.+||..+|+.+| .++++.++.+||..+|. ++|.|+|.||+..|-...
T Consensus 16 ~~qi~~lkeaF~l~D~d~~-G~I~~~el~~ilr~lg-----~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~ 88 (160)
T COG5126 16 EEQIQELKEAFQLFDRDSD-GLIDRNELGKILRSLG-----FNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRG 88 (160)
T ss_pred HHHHHHHHHHHHHhCcCCC-CCCcHHHHHHHHHHcC-----CCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccC
Confidence 5677899999999999999 9999999999999999 89999999999999999 999999999997774322
Q ss_pred --------cccccccCCCcccccccccccccccceEEeccccCCcccccCCCCCCCCCCCCcceeE
Q 013259 377 --------WSDQRNDLNDEDEDGFVKSSLEQTIGFSVKNAVLFPPEVEKGRWPENYSLSDHARLTV 434 (447)
Q Consensus 377 --------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 434 (447)
++.-.|.+..|.|.-++...-...+|-+.+..- |.+ -...++.+.||.++-
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~dee-----v~~--ll~~~d~d~dG~i~~ 147 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEE-----VEK--LLKEYDEDGDGEIDY 147 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHH-----HHH--HHHhcCCCCCceEeH
Confidence 234556777777777666555556665544433 222 234677788888763
No 29
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.06 E-value=4.4e-10 Score=88.09 Aligned_cols=71 Identities=18% Similarity=0.253 Sum_probs=58.9
Q ss_pred HhhhhhHHHHhhhhc-CCCCCC-cccHHHHHHHHHH-hccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 300 RRASLTETDAFAFLK-ADNDGD-YITYSGFCEALEQ-LNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 300 ~~~~~~l~~~F~~~D-~~~~~G-~i~~~el~~~l~~-~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
......++++|+.|| .|++ | +|+.+||+.+|+. +|.. -...+++++++.+|+.+|.|++|.|+|+||+.++
T Consensus 5 e~~~~~l~~~F~~fDd~dg~-G~~Is~~El~~~l~~~lg~~-~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~ 78 (92)
T cd05025 5 ETAMETLINVFHAHSGKEGD-KYKLSKKELKDLLQTELSDF-LDAQKDADAVDKIMKELDENGDGEVDFQEFVVLV 78 (92)
T ss_pred HHHHHHHHHHHHHHhcccCC-CCeECHHHHHHHHHHHHHHH-ccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHH
Confidence 345578999999997 9999 9 4999999999985 5510 0034688999999999999999999999999655
No 30
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.04 E-value=5.6e-10 Score=87.86 Aligned_cols=68 Identities=15% Similarity=0.201 Sum_probs=59.9
Q ss_pred hhhhhHHHHhhhhcC-CC-CCCcccHHHHHHHHHH-----hccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHh
Q 013259 301 RASLTETDAFAFLKA-DN-DGDYITYSGFCEALEQ-----LNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 373 (447)
Q Consensus 301 ~~~~~l~~~F~~~D~-~~-~~G~i~~~el~~~l~~-----~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~ 373 (447)
.....++.+|..||. |+ + |+|+.+||+.+|+. +| ..+++++++.+++.+|.+++|.|+|+||+.++.
T Consensus 5 ~~~~~l~~~F~~~D~~dg~d-G~Is~~El~~~l~~~~g~~lg-----~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDK-NTLSRKELKKLMEKELSEFLK-----NQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHHHHhccCCCC-CeECHHHHHHHHHHHhHHHhh-----ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 345678999999997 97 8 99999999999986 45 678999999999999999999999999997764
Q ss_pred c
Q 013259 374 K 374 (447)
Q Consensus 374 ~ 374 (447)
.
T Consensus 79 ~ 79 (94)
T cd05031 79 G 79 (94)
T ss_pred H
Confidence 4
No 31
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.04 E-value=1.5e-10 Score=101.13 Aligned_cols=101 Identities=16% Similarity=0.171 Sum_probs=91.5
Q ss_pred hhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHhc-----cCc
Q 013259 303 SLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK-----TTW 377 (447)
Q Consensus 303 ~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~~-----~~~ 377 (447)
...+...|...|+|+. |+|+.+||+.+|.+.+ +.+++.+.++.||..||.+.+|+|+|.||. .||. +.+
T Consensus 56 ~~~~~~~f~~vD~d~s-g~i~~~eLq~aLsn~~----~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~-~Lw~~i~~Wr~v 129 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRS-GRILAKELQQALSNGT----WSPFSIETCRLMISMFDRDNSGTIGFKEFK-ALWKYINQWRNV 129 (221)
T ss_pred cHHHHHHHHhhCcccc-ccccHHHHHHHhhcCC----CCCCCHHHHHHHHHHhcCCCCCccCHHHHH-HHHHHHHHHHHH
Confidence 3467789999999999 9999999999998754 377999999999999999999999999999 7776 566
Q ss_pred ccccccCCCcccccccccccccccceEEeccc
Q 013259 378 SDQRNDLNDEDEDGFVKSSLEQTIGFSVKNAV 409 (447)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 409 (447)
+.+.|.+.+|.|+..|...++..+||.+++..
T Consensus 130 F~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~ 161 (221)
T KOG0037|consen 130 FRTYDRDRSGTIDSSELRQALTQLGYRLSPQF 161 (221)
T ss_pred HHhcccCCCCcccHHHHHHHHHHcCcCCCHHH
Confidence 78999999999999999999999999988776
No 32
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.03 E-value=5.9e-10 Score=96.00 Aligned_cols=119 Identities=19% Similarity=0.284 Sum_probs=87.8
Q ss_pred hhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHhccCcc--
Q 013259 301 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWKTTWS-- 378 (447)
Q Consensus 301 ~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~~~~~~-- 378 (447)
....+++++|..||+|++ |+|+..||..+|+.+| ..+++.++..++.++|.+++|.|+|+||+.+|......
T Consensus 5 ~~~~el~~~F~~fD~d~~-G~i~~~el~~~lr~lg-----~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~ 78 (151)
T KOG0027|consen 5 EQILELKEAFQLFDKDGD-GKISVEELGAVLRSLG-----QNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKT 78 (151)
T ss_pred HHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcC-----CCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccc
Confidence 345689999999999999 9999999999999999 88999999999999999999999999999766432221
Q ss_pred -------------cccccCCCcccccccccccccccceEEeccccCCcccccCCCCCCCCCCCCcce
Q 013259 379 -------------DQRNDLNDEDEDGFVKSSLEQTIGFSVKNAVLFPPEVEKGRWPENYSLSDHARL 432 (447)
Q Consensus 379 -------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 432 (447)
.-.|.+..|.|...|...-...+|.+.+ ..++.. .....|.+.||.+
T Consensus 79 ~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~-----~~e~~~--mi~~~d~d~dg~i 138 (151)
T KOG0027|consen 79 DEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLT-----DEECKE--MIREVDVDGDGKV 138 (151)
T ss_pred cccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCC-----HHHHHH--HHHhcCCCCCCeE
Confidence 2335555566666665555555664444 112222 2335556667765
No 33
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.03 E-value=7.5e-10 Score=87.52 Aligned_cols=65 Identities=23% Similarity=0.301 Sum_probs=59.5
Q ss_pred hhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHh
Q 013259 301 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 373 (447)
Q Consensus 301 ~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~ 373 (447)
.....++++|+.+|+|++ |+|+.+||+.+|+.+| ++++++++++..+|.+++|.|+|+||+.++.
T Consensus 7 ~~~~~l~~~F~~~D~d~~-G~Is~~el~~~l~~~~-------~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQD-GTVTGAQAKPILLKSG-------LPQTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred HHHHHHHHHHHHhCCCCC-CeEeHHHHHHHHHHcC-------CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 355688999999999999 9999999999999987 7889999999999999999999999996663
No 34
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.01 E-value=7.7e-10 Score=81.14 Aligned_cols=59 Identities=25% Similarity=0.350 Sum_probs=54.6
Q ss_pred HHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHh
Q 013259 307 TDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 373 (447)
Q Consensus 307 ~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~ 373 (447)
+++|+.+|+|++ |.|+.+||+.+|..+| +++++++.++..+|.+++|.|+|+||+..+.
T Consensus 2 ~~~F~~~D~~~~-G~i~~~el~~~l~~~g-------~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGD-GLISGDEARPFLGKSG-------LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCC-CcCcHHHHHHHHHHcC-------CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 578999999999 9999999999999988 5889999999999999999999999996653
No 35
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=2.4e-09 Score=88.80 Aligned_cols=78 Identities=24% Similarity=0.339 Sum_probs=69.0
Q ss_pred HHHhHHHHHH--HhhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHH
Q 013259 290 AVFGMFKCLL--RRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKE 367 (447)
Q Consensus 290 ~v~~~~~~~~--~~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~E 367 (447)
.+..++...+ +....++..+|+.+|.|++ |+||..+|+.+.+.|| .+++++++..||.++|.|+||-|+-+|
T Consensus 90 ~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~-Gkis~~~lkrvakeLg-----enltD~El~eMIeEAd~d~dgevneeE 163 (172)
T KOG0028|consen 90 DFRRVMTVKLGERDTKEEIKKAFRLFDDDKT-GKISQRNLKRVAKELG-----ENLTDEELMEMIEEADRDGDGEVNEEE 163 (172)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHcccccCC-CCcCHHHHHHHHHHhC-----ccccHHHHHHHHHHhcccccccccHHH
Confidence 3444444444 5688899999999999999 9999999999999999 999999999999999999999999999
Q ss_pred HHHHHh
Q 013259 368 FQQRIW 373 (447)
Q Consensus 368 F~~~~~ 373 (447)
|...|.
T Consensus 164 F~~imk 169 (172)
T KOG0028|consen 164 FIRIMK 169 (172)
T ss_pred HHHHHh
Confidence 996553
No 36
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.96 E-value=2.1e-09 Score=83.15 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=58.2
Q ss_pred HhhhhhHHHHhhh-hcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHh
Q 013259 300 RRASLTETDAFAF-LKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 373 (447)
Q Consensus 300 ~~~~~~l~~~F~~-~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~ 373 (447)
......|..+|+. +|+++++|+|+.+||+.+|....-.-.....++.+++++|+.+|.|+||.|+|+||+.+|.
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 3456688899999 8888982399999999999875200000346778999999999999999999999997663
No 37
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.92 E-value=2.6e-09 Score=82.98 Aligned_cols=71 Identities=25% Similarity=0.288 Sum_probs=58.6
Q ss_pred hhhhhHHHHhhhhcC--CCCCCcccHHHHHHHHHH-hccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHh
Q 013259 301 RASLTETDAFAFLKA--DNDGDYITYSGFCEALEQ-LNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 373 (447)
Q Consensus 301 ~~~~~l~~~F~~~D~--~~~~G~i~~~el~~~l~~-~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~ 373 (447)
.....++++|..||+ |++ |+|+.+||+.+++. +|.. .+...+.++++.++..+|.+++|.|+|+||+.++.
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~-G~Is~~el~~~l~~~~g~~-~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~ 78 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDK-DTLSKKELKELLETELPNF-LKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHHHHHHHhhccCCC-CcCcHHHHHHHHHHHhhhh-ccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHH
Confidence 456678999999999 899 99999999999986 5500 00224589999999999999999999999997663
No 38
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.91 E-value=1.9e-09 Score=92.38 Aligned_cols=82 Identities=20% Similarity=0.315 Sum_probs=70.7
Q ss_pred HHHhHHHHHHHhhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHH
Q 013259 290 AVFGMFKCLLRRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQ 369 (447)
Q Consensus 290 ~v~~~~~~~~~~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~ 369 (447)
.++.-+...-+.+++.+..+|+.+|.+.| |+|+..||+.+|.++| .+-|.--++.||+++|.|.||+|+|-||+
T Consensus 85 n~yteF~eFsrkqIk~~~~~Fk~yDe~rD-gfIdl~ELK~mmEKLg-----apQTHL~lK~mikeVded~dgklSfrefl 158 (244)
T KOG0041|consen 85 NVYTEFSEFSRKQIKDAESMFKQYDEDRD-GFIDLMELKRMMEKLG-----APQTHLGLKNMIKEVDEDFDGKLSFREFL 158 (244)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHhccccc-ccccHHHHHHHHHHhC-----CchhhHHHHHHHHHhhcccccchhHHHHH
Confidence 34444443447788899999999999999 9999999999999999 88888889999999999999999999999
Q ss_pred HHHhccCcc
Q 013259 370 QRIWKTTWS 378 (447)
Q Consensus 370 ~~~~~~~~~ 378 (447)
+++++...
T Consensus 159 -LIfrkaaa 166 (244)
T KOG0041|consen 159 -LIFRKAAA 166 (244)
T ss_pred -HHHHHHhc
Confidence 77665543
No 39
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.91 E-value=3.8e-09 Score=73.86 Aligned_cols=49 Identities=33% Similarity=0.518 Sum_probs=46.3
Q ss_pred CcccHHHHHHHHHHhccCCCCCC-CCHHHHHHHHHHcCCCCCceeehHHHHHHHh
Q 013259 320 DYITYSGFCEALEQLNLTGHKHG-LADEETKDLWVQADIDGNGVVDYKEFQQRIW 373 (447)
Q Consensus 320 G~i~~~el~~~l~~~g~~~~~~~-~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~ 373 (447)
|.|+.+||+.+|..+| .. +++++++.++..+|.|++|.|+|+||+.++.
T Consensus 3 G~i~~~~~~~~l~~~g-----~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 3 GKITREEFRRALSKLG-----IKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SEEEHHHHHHHHHHTT-----SSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CEECHHHHHHHHHHhC-----CCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 9999999999998889 88 9999999999999999999999999997663
No 40
>PTZ00183 centrin; Provisional
Probab=98.81 E-value=4.4e-09 Score=91.18 Aligned_cols=120 Identities=17% Similarity=0.216 Sum_probs=85.7
Q ss_pred hhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHhcc-----
Q 013259 301 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWKT----- 375 (447)
Q Consensus 301 ~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~~~----- 375 (447)
.....+.++|..+|.+++ |+|+..||..+|+.+| ..++.+++..++..+|.+++|.|+|+||+..+...
T Consensus 14 ~~~~~~~~~F~~~D~~~~-G~i~~~e~~~~l~~~g-----~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~ 87 (158)
T PTZ00183 14 DQKKEIREAFDLFDTDGS-GTIDPKELKVAMRSLG-----FEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERD 87 (158)
T ss_pred HHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCC
Confidence 344678899999999999 9999999999999998 77889999999999999999999999999765321
Q ss_pred ------CcccccccCCCcccccccccccccccceEEeccccCCcccccCCCCCCCCCCCCccee
Q 013259 376 ------TWSDQRNDLNDEDEDGFVKSSLEQTIGFSVKNAVLFPPEVEKGRWPENYSLSDHARLT 433 (447)
Q Consensus 376 ------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 433 (447)
..+...+.+..|.++..+........|..++ ..++.. +...++.+++|.|+
T Consensus 88 ~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~-----~~~~~~--~~~~~d~~~~g~i~ 144 (158)
T PTZ00183 88 PREEILKAFRLFDDDKTGKISLKNLKRVAKELGETIT-----DEELQE--MIDEADRNGDGEIS 144 (158)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCC-----HHHHHH--HHHHhCCCCCCcCc
Confidence 1123444555555555444433333342222 222333 45677888888765
No 41
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.76 E-value=4e-08 Score=70.12 Aligned_cols=61 Identities=31% Similarity=0.583 Sum_probs=56.8
Q ss_pred HHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 306 ETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 306 l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
+..+|..+|.+++ |.|+.+|+..++..++ ...+.+.+..++..+|.+++|.|+|+||+..+
T Consensus 2 ~~~~f~~~d~~~~-g~l~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGD-GTISADELKAALKSLG-----EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCC-CcCcHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999 9999999999999999 88999999999999999999999999998543
No 42
>PTZ00184 calmodulin; Provisional
Probab=98.75 E-value=6.8e-09 Score=88.91 Aligned_cols=121 Identities=16% Similarity=0.230 Sum_probs=85.0
Q ss_pred hhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHhcc-----
Q 013259 301 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWKT----- 375 (447)
Q Consensus 301 ~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~~~----- 375 (447)
...+.++..|..+|.+++ |.|+.+||..++..+| ..++.+++..++..+|.+++|.|+|+||+..+...
T Consensus 8 ~~~~~~~~~F~~~D~~~~-G~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 81 (149)
T PTZ00184 8 EQIAEFKEAFSLFDKDGD-GTITTKELGTVMRSLG-----QNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTD 81 (149)
T ss_pred HHHHHHHHHHHHHcCCCC-CcCCHHHHHHHHHHhC-----CCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCc
Confidence 345678899999999999 9999999999999988 77888999999999999999999999999766421
Q ss_pred ------CcccccccCCCcccccccccccccccceEEeccccCCcccccCCCCCCCCCCCCcceeE
Q 013259 376 ------TWSDQRNDLNDEDEDGFVKSSLEQTIGFSVKNAVLFPPEVEKGRWPENYSLSDHARLTV 434 (447)
Q Consensus 376 ------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 434 (447)
..+...|.+..|.+..++........|+.++... +.. ....++.+++|.++.
T Consensus 82 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~-----~~~--~~~~~d~~~~g~i~~ 139 (149)
T PTZ00184 82 SEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEE-----VDE--MIREADVDGDGQINY 139 (149)
T ss_pred HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHH-----HHH--HHHhcCCCCCCcCcH
Confidence 1223334445555555554433333343322221 111 335677788888653
No 43
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.72 E-value=3.4e-08 Score=76.48 Aligned_cols=68 Identities=18% Similarity=0.278 Sum_probs=57.9
Q ss_pred HhhhhhHHHHhhhhcCC--CCCCcccHHHHHHHHH-HhccCCCCCCCC----HHHHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 300 RRASLTETDAFAFLKAD--NDGDYITYSGFCEALE-QLNLTGHKHGLA----DEETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 300 ~~~~~~l~~~F~~~D~~--~~~G~i~~~el~~~l~-~~g~~~~~~~~~----~~~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
......+...|+.++.. .+ |+|+.+||+.+|. .+| ..++ +++++.+|+.+|.|++|.|+|+||+.+|
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~-~~Is~~El~~ll~~~~g-----~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~ 77 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHP-DTLYKKEFKQLVEKELP-----NFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLV 77 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCc-ccCCHHHHHHHHHHHhh-----HhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence 34566788899999975 36 9999999999997 566 5566 8999999999999999999999999766
Q ss_pred h
Q 013259 373 W 373 (447)
Q Consensus 373 ~ 373 (447)
.
T Consensus 78 ~ 78 (88)
T cd05030 78 I 78 (88)
T ss_pred H
Confidence 4
No 44
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=3.8e-08 Score=81.76 Aligned_cols=68 Identities=19% Similarity=0.315 Sum_probs=62.5
Q ss_pred hhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHhc
Q 013259 301 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 374 (447)
Q Consensus 301 ~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~~ 374 (447)
.+...++.+|..||.+++ |+|+.+||+.+++.+| ..+..+++.+|+..+|+++.|.|+|++|+..|-.
T Consensus 30 ~q~q~i~e~f~lfd~~~~-g~iD~~EL~vAmralG-----FE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~ 97 (172)
T KOG0028|consen 30 EQKQEIKEAFELFDPDMA-GKIDVEELKVAMRALG-----FEPKKEEILKLLADVDKEGSGKITFEDFRRVMTV 97 (172)
T ss_pred HHHhhHHHHHHhhccCCC-CcccHHHHHHHHHHcC-----CCcchHHHHHHHHhhhhccCceechHHHHHHHHH
Confidence 455788999999999999 9999999999999999 6789999999999999999999999999977643
No 45
>PF14658 EF-hand_9: EF-hand domain
Probab=98.71 E-value=5.5e-08 Score=69.19 Aligned_cols=60 Identities=20% Similarity=0.335 Sum_probs=55.9
Q ss_pred HHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCC-CCCHHHHHHHHHHcCCCCC-ceeehHHHHHHHh
Q 013259 308 DAFAFLKADNDGDYITYSGFCEALEQLNLTGHKH-GLADEETKDLWVQADIDGN-GVVDYKEFQQRIW 373 (447)
Q Consensus 308 ~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~-~~~~~~~~~~~~~~D~~~~-g~i~~~EF~~~~~ 373 (447)
.+|..||.++. |.|...+|...|+.++ . .+++.+++.+.+++|.++. |.|+|+.|+..|.
T Consensus 2 ~~F~~fD~~~t-G~V~v~~l~~~Lra~~-----~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 2 TAFDAFDTQKT-GRVPVSDLITYLRAVT-----GRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred cchhhcCCcCC-ceEeHHHHHHHHHHHc-----CCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 37999999999 9999999999999998 6 8999999999999999998 9999999997663
No 46
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.69 E-value=4.3e-08 Score=79.47 Aligned_cols=62 Identities=15% Similarity=0.183 Sum_probs=54.9
Q ss_pred hhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 301 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 301 ~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
.....+.-+|..+|.|+| |+|+.+||..++ ++ ..+..+..+|..+|.|+||.|+++||...+
T Consensus 45 ~~~~~l~w~F~~lD~d~D-G~Ls~~EL~~~~--l~-------~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYD-GKLSHHELAPIR--LD-------PNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCC-CcCCHHHHHHHH--cc-------chHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 355678889999999999 999999999876 45 567889999999999999999999999766
No 47
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.67 E-value=1.1e-07 Score=78.38 Aligned_cols=94 Identities=23% Similarity=0.287 Sum_probs=78.9
Q ss_pred cccceeccCcchhhhhhhhhhhHHHHhHHHHHH--HhhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCC
Q 013259 267 GVDFIWLLNPNKYRKLLKASWSEAVFGMFKCLL--RRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLA 344 (447)
Q Consensus 267 rIDyI~~~~~~~~~~~~~~sw~~~v~~~~~~~~--~~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~ 344 (447)
-||.++-..+.+. .-..++.++...+ ......|..+|+.||.+++ |.|..+.|+++|..+| .+++
T Consensus 69 elDaM~~Ea~gPI-------Nft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~-G~I~~d~lre~Ltt~g-----Dr~~ 135 (171)
T KOG0031|consen 69 ELDAMMKEAPGPI-------NFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGS-GKIDEDYLRELLTTMG-----DRFT 135 (171)
T ss_pred HHHHHHHhCCCCe-------eHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCC-CccCHHHHHHHHHHhc-----ccCC
Confidence 3777764322211 2346688888888 5677899999999999999 9999999999999999 9999
Q ss_pred HHHHHHHHHHcCCCCCceeehHHHHHHHh
Q 013259 345 DEETKDLWVQADIDGNGVVDYKEFQQRIW 373 (447)
Q Consensus 345 ~~~~~~~~~~~D~~~~g~i~~~EF~~~~~ 373 (447)
++||+.|++.+=.|..|.|+|.+|+..|-
T Consensus 136 ~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 136 DEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 99999999999999999999999996663
No 48
>PTZ00184 calmodulin; Provisional
Probab=98.65 E-value=1.1e-07 Score=81.23 Aligned_cols=65 Identities=26% Similarity=0.543 Sum_probs=60.0
Q ss_pred hhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHh
Q 013259 303 SLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 373 (447)
Q Consensus 303 ~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~ 373 (447)
...+..+|+.+|.+++ |+|+.+||+.++..+| ..++.++++.++..+|.+++|.|+|+||+..+.
T Consensus 83 ~~~~~~~F~~~D~~~~-g~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGN-GFISAAELRHVMTNLG-----EKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHHhhCCCCC-CeEeHHHHHHHHHHHC-----CCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 3567889999999999 9999999999999998 779999999999999999999999999997664
No 49
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.63 E-value=6.8e-08 Score=84.69 Aligned_cols=66 Identities=24% Similarity=0.189 Sum_probs=61.3
Q ss_pred hhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHh
Q 013259 302 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 373 (447)
Q Consensus 302 ~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~ 373 (447)
.....+++|+.+|+|++ |.|+..||+.+|..+| ..++++-++.+++.+|..++|.|.|++|++.+.
T Consensus 122 ~i~~Wr~vF~~~D~D~S-G~I~~sEL~~Al~~~G-----y~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv 187 (221)
T KOG0037|consen 122 YINQWRNVFRTYDRDRS-GTIDSSELRQALTQLG-----YRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCV 187 (221)
T ss_pred HHHHHHHHHHhcccCCC-CcccHHHHHHHHHHcC-----cCCCHHHHHHHHHHhccccCCceeHHHHHHHHH
Confidence 44577899999999999 9999999999999999 889999999999999988899999999998763
No 50
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.63 E-value=1.2e-07 Score=76.82 Aligned_cols=79 Identities=19% Similarity=0.358 Sum_probs=65.0
Q ss_pred HHHHhHHHHHHHh----hhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceee
Q 013259 289 EAVFGMFKCLLRR----ASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVD 364 (447)
Q Consensus 289 ~~v~~~~~~~~~~----~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~ 364 (447)
+.++.|.++.... .-++..+-++.||++++ |+|...||+.+|..+| ..++++|+++++.-. .|++|.|+
T Consensus 69 E~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~-G~i~~aeLRhvLttlG-----ekl~eeEVe~Llag~-eD~nG~i~ 141 (152)
T KOG0030|consen 69 EEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGN-GTIMGAELRHVLTTLG-----EKLTEEEVEELLAGQ-EDSNGCIN 141 (152)
T ss_pred HHHHHHHHHHHhccccCcHHHHHHHHHhhcccCC-cceeHHHHHHHHHHHH-----hhccHHHHHHHHccc-cccCCcCc
Confidence 4555665555422 33466777899999999 9999999999999999 999999999999765 67889999
Q ss_pred hHHHHHHHhc
Q 013259 365 YKEFQQRIWK 374 (447)
Q Consensus 365 ~~EF~~~~~~ 374 (447)
|+.|++.++.
T Consensus 142 YE~fVk~i~~ 151 (152)
T KOG0030|consen 142 YEAFVKHIMS 151 (152)
T ss_pred HHHHHHHHhc
Confidence 9999987753
No 51
>PTZ00183 centrin; Provisional
Probab=98.63 E-value=1.7e-07 Score=81.12 Aligned_cols=66 Identities=23% Similarity=0.363 Sum_probs=60.9
Q ss_pred hhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHhc
Q 013259 303 SLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 374 (447)
Q Consensus 303 ~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~~ 374 (447)
...++.+|+.+|.+++ |+|+..||..++..+| ..+++++++.++..+|.+++|.|+|+||+..+..
T Consensus 89 ~~~l~~~F~~~D~~~~-G~i~~~e~~~~l~~~~-----~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 89 REEILKAFRLFDDDKT-GKISLKNLKRVAKELG-----ETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHHHhCCCCC-CcCcHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 3568899999999999 9999999999999999 8899999999999999999999999999976644
No 52
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.59 E-value=3.2e-08 Score=94.18 Aligned_cols=126 Identities=18% Similarity=0.198 Sum_probs=99.2
Q ss_pred hhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHhcc-----
Q 013259 301 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWKT----- 375 (447)
Q Consensus 301 ~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~~~----- 375 (447)
.....++.+|+.||.+++ |.++..+|.+++..++. .+...+-.+.++..+|.|.||.+||+||.+++..+
T Consensus 11 er~~r~~~lf~~lD~~~~-g~~d~~~l~k~~~~l~~----~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~ 85 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKND-GQVDLDQLEKGLEKLDH----PKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELY 85 (463)
T ss_pred HHHHHHHHHHHHhccCCC-CceeHHHHHHHHHhcCC----CCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHH
Confidence 345678899999999999 99999999999999971 24777889999999999999999999999998653
Q ss_pred CcccccccCCCcccccccccccccccceEEeccccCCcccccCCCCCCCCCCCCcceeEEeeecc
Q 013259 376 TWSDQRNDLNDEDEDGFVKSSLEQTIGFSVKNAVLFPPEVEKGRWPENYSLSDHARLTVVFSPIR 440 (447)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 440 (447)
.++...|.+..|.++-.|......++|.+++...+.. -++ .+++||.-++.+.+-|
T Consensus 86 ~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k-~~e--------~~d~~g~~~I~~~e~r 141 (463)
T KOG0036|consen 86 RIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAK-FFE--------HMDKDGKATIDLEEWR 141 (463)
T ss_pred HHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHH-HHH--------HhccCCCeeeccHHHH
Confidence 3457788889999999999888999998876665321 111 2455666666665543
No 53
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.59 E-value=1.5e-07 Score=77.67 Aligned_cols=100 Identities=21% Similarity=0.293 Sum_probs=75.3
Q ss_pred HHHhHHHHHHHhhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHH
Q 013259 290 AVFGMFKCLLRRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQ 369 (447)
Q Consensus 290 ~v~~~~~~~~~~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~ 369 (447)
.++.|+. +.++.+++++|..+|+|+| |.|..++|+.++..+| ...++++++.||++. .|-|+|.-|+
T Consensus 21 nvFamf~---q~QIqEfKEAF~~mDqnrD-G~IdkeDL~d~~aSlG-----k~~~d~elDaM~~Ea----~gPINft~FL 87 (171)
T KOG0031|consen 21 NVFAMFD---QSQIQEFKEAFNLMDQNRD-GFIDKEDLRDMLASLG-----KIASDEELDAMMKEA----PGPINFTVFL 87 (171)
T ss_pred hHHHHhh---HHHHHHHHHHHHHHhccCC-CcccHHHHHHHHHHcC-----CCCCHHHHHHHHHhC----CCCeeHHHHH
Confidence 4455443 5678899999999999999 9999999999999999 889999999999886 6899999999
Q ss_pred HHHhccCcc-----------cccccCCCcccccccccccccccc
Q 013259 370 QRIWKTTWS-----------DQRNDLNDEDEDGFVKSSLEQTIG 402 (447)
Q Consensus 370 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~g 402 (447)
.++-.+... ...|....|.|++.....-+.+.|
T Consensus 88 TmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~g 131 (171)
T KOG0031|consen 88 TMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMG 131 (171)
T ss_pred HHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhc
Confidence 766443332 334555555555544443344444
No 54
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.58 E-value=5.9e-08 Score=78.62 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=77.8
Q ss_pred hhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCC--CCceeehHHHHHHHhccCcc
Q 013259 301 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADID--GNGVVDYKEFQQRIWKTTWS 378 (447)
Q Consensus 301 ~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~--~~g~i~~~EF~~~~~~~~~~ 378 (447)
+...+++++|..||..+| |+|+..++..+|+.+| .++++.++.+.+.+++.+ +--+|+|++|+- |+....
T Consensus 8 d~~~e~ke~F~lfD~~gD-~ki~~~q~gdvlRalG-----~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLp-m~q~va- 79 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGD-GKISGSQVGDVLRALG-----QNPTNAEVLKVLGQPKRREMNVKRLDFEEFLP-MYQQVA- 79 (152)
T ss_pred chHHHHHHHHHHHhccCc-ccccHHHHHHHHHHhc-----CCCcHHHHHHHHcCcccchhhhhhhhHHHHHH-HHHHHH-
Confidence 344789999999999999 9999999999999999 999999999999999888 446899999994 433222
Q ss_pred cccccCCCcccccccccccccccceE
Q 013259 379 DQRNDLNDEDEDGFVKSSLEQTIGFS 404 (447)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (447)
...++...+++-+..++.|....|+.
T Consensus 80 knk~q~t~edfvegLrvFDkeg~G~i 105 (152)
T KOG0030|consen 80 KNKDQGTYEDFVEGLRVFDKEGNGTI 105 (152)
T ss_pred hccccCcHHHHHHHHHhhcccCCcce
Confidence 34555666777777777777777754
No 55
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.57 E-value=2.1e-07 Score=81.85 Aligned_cols=67 Identities=25% Similarity=0.382 Sum_probs=55.8
Q ss_pred hhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCC--HH----HHHHHHHHcCCCCCceeehHHHHHHHhcc
Q 013259 304 LTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLA--DE----ETKDLWVQADIDGNGVVDYKEFQQRIWKT 375 (447)
Q Consensus 304 ~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~--~~----~~~~~~~~~D~~~~g~i~~~EF~~~~~~~ 375 (447)
..++=+|+.+|.+++ |+|+.+||+.++..+- + ...+ ++ -++.+|.++|.|+||+|+|+||.+.++..
T Consensus 104 ~Kl~faF~vYD~~~~-G~I~reel~~iv~~~~--~--~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGD-GFISREELKQILRMMV--G--ENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHhcCCCC-CcCcHHHHHHHHHHHH--c--cCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 477779999999999 9999999999999873 0 3333 33 36778999999999999999999888765
No 56
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=98.49 E-value=6.7e-07 Score=86.16 Aligned_cols=61 Identities=20% Similarity=0.079 Sum_probs=38.4
Q ss_pred cCCCCCeEEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHH-Hc-CCCCCcEEEeecCCCccC
Q 013259 163 NGDLRQEILIVNTHLLFPHDSSLSLVRLHQVYKILQHVESYQK-EH-NLKPIPIILCGDWNGSKR 225 (447)
Q Consensus 163 ~~~~g~~l~v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~~~~~-~~-~~~~~pvIl~GDFN~~p~ 225 (447)
....+..++++|+||.+.. .....|..+...++..+.--.. .. ......+|++||||---+
T Consensus 133 ~~~~~~~~~fv~~HL~a~~--~~~~~R~~~~~~I~~~~~f~~~~~~~~~~~d~~f~~GDlNyRi~ 195 (310)
T smart00128 133 FKLSDTSFCFVNSHLAAGA--SNVEQRNQDYKTILRALSFPERAELSQFDHDVVFWFGDLNFRLD 195 (310)
T ss_pred EEEcCcEEEEEeecccccc--chhhhhHHHHHHHHHhcCCCCCccccccccceEEEecCcceeec
Confidence 3345678999999997743 2345688888877654421000 00 013567999999997543
No 57
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.42 E-value=1e-06 Score=67.42 Aligned_cols=69 Identities=13% Similarity=0.195 Sum_probs=53.7
Q ss_pred HhhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHH-hc-cCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 300 RRASLTETDAFAFLKADNDGDYITYSGFCEALEQ-LN-LTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 300 ~~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~-~g-~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
......|..+|+.+- .+. +.++..||+.+|+. ++ +- ...-.++.++++|+.+|.|+||.|+|.||+.++
T Consensus 4 E~ai~~lI~~FhkYa-G~~-~tLsk~Elk~Ll~~Elp~~l--~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv 74 (91)
T cd05024 4 EHSMEKMMLTFHKFA-GEK-NYLNRDDLQKLMEKEFSEFL--KNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLI 74 (91)
T ss_pred HHHHHHHHHHHHHHc-CCC-CcCCHHHHHHHHHHHhHHHH--cCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 345567788999987 334 79999999999965 22 00 033467889999999999999999999999655
No 58
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.26 E-value=3e-06 Score=80.96 Aligned_cols=74 Identities=23% Similarity=0.376 Sum_probs=67.1
Q ss_pred HHHHHHHhhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHh
Q 013259 294 MFKCLLRRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 373 (447)
Q Consensus 294 ~~~~~~~~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~ 373 (447)
.+...+......+.++|+.+|.++| |.|+.+|+.+.|+.+| .++++++++++++.+|+++++.|+++||...++
T Consensus 72 eF~~Y~~~~E~~l~~~F~~iD~~hd-G~i~~~Ei~~~l~~~g-----i~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 72 EFKRYLDNKELELYRIFQSIDLEHD-GKIDPNEIWRYLKDLG-----IQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred HHHHHHHHhHHHHHHHHhhhccccC-CccCHHHHHHHHHHhC-----CccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 3444566778899999999999999 9999999999999999 889999999999999999999999999987663
No 59
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.25 E-value=3.9e-06 Score=80.54 Aligned_cols=69 Identities=23% Similarity=0.380 Sum_probs=61.2
Q ss_pred hhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 302 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 302 ~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
....|..+|+.+|+|++ |.||.+||+.+.+.++ ++....++++++.++-+.+|.|+||.||++||+++.
T Consensus 545 ~ks~LetiF~~iD~D~S-G~isldEF~~a~~l~~-sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAF 613 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNS-GEISLDEFRTAWKLLS-SHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAF 613 (631)
T ss_pred chhhHHHHHHHhccCCC-CceeHHHHHHHHHHHH-hhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHH
Confidence 45678899999999999 9999999999998875 233467999999999999999999999999999766
No 60
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.23 E-value=1.7e-06 Score=51.60 Aligned_cols=26 Identities=35% Similarity=0.740 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 347 ETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 347 ~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
|++++|+.+|+|+||.|+++||+..|
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~ 26 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMM 26 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 58899999999999999999999765
No 61
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.23 E-value=1.3e-06 Score=52.03 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=26.7
Q ss_pred hHHHHhhhhcCCCCCCcccHHHHHHHHHHh
Q 013259 305 TETDAFAFLKADNDGDYITYSGFCEALEQL 334 (447)
Q Consensus 305 ~l~~~F~~~D~~~~~G~i~~~el~~~l~~~ 334 (447)
+++++|+.+|+|+| |+|+.+||+.+|+.|
T Consensus 1 E~~~~F~~~D~d~d-G~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGD-GKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSS-SEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCC-CcCCHHHHHHHHHhC
Confidence 47889999999999 999999999999864
No 62
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.07 E-value=1.7e-05 Score=64.92 Aligned_cols=81 Identities=27% Similarity=0.477 Sum_probs=60.8
Q ss_pred HHHhHHHHHHHhhhh--hHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHH----HHHHHHcCCCCCcee
Q 013259 290 AVFGMFKCLLRRASL--TETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEET----KDLWVQADIDGNGVV 363 (447)
Q Consensus 290 ~v~~~~~~~~~~~~~--~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~----~~~~~~~D~~~~g~i 363 (447)
.+++|+.-.-..... .+.=+|+.+|-|+| ++|...+|...+..+-- ..++++|+ ++++.+.|.|+||++
T Consensus 92 dFlDmfSV~sE~APrdlK~~YAFkIYDfd~D-~~i~~~DL~~~l~~lTr----~eLs~eEv~~i~ekvieEAD~DgDgkl 166 (189)
T KOG0038|consen 92 DFLDMFSVFSEMAPRDLKAKYAFKIYDFDGD-EFIGHDDLEKTLTSLTR----DELSDEEVELICEKVIEEADLDGDGKL 166 (189)
T ss_pred HHHHHHHHHHhhChHHhhhhheeEEeecCCC-CcccHHHHHHHHHHHhh----ccCCHHHHHHHHHHHHHHhcCCCCCcc
Confidence 445554433322222 33447999999999 99999999999988730 34788775 678899999999999
Q ss_pred ehHHHHHHHhcc
Q 013259 364 DYKEFQQRIWKT 375 (447)
Q Consensus 364 ~~~EF~~~~~~~ 375 (447)
+|.||-.++.+.
T Consensus 167 ~~~eFe~~i~ra 178 (189)
T KOG0038|consen 167 SFAEFEHVILRA 178 (189)
T ss_pred cHHHHHHHHHhC
Confidence 999999877654
No 63
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.02 E-value=5.8e-06 Score=50.31 Aligned_cols=30 Identities=23% Similarity=0.486 Sum_probs=26.6
Q ss_pred hHHHHhhhhcCCCCCCcccHHHHHHHHH-Hhc
Q 013259 305 TETDAFAFLKADNDGDYITYSGFCEALE-QLN 335 (447)
Q Consensus 305 ~l~~~F~~~D~~~~~G~i~~~el~~~l~-~~g 335 (447)
+++++|+.+|+|++ |+|+.+||+.+|+ .+|
T Consensus 1 ~l~~~F~~~D~d~d-G~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGD-GFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSS-SEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCC-CcCcHHHHHHHHHHhcC
Confidence 47889999999999 9999999999999 576
No 64
>PLN02964 phosphatidylserine decarboxylase
Probab=98.02 E-value=1e-05 Score=84.07 Aligned_cols=64 Identities=22% Similarity=0.433 Sum_probs=58.8
Q ss_pred hHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHhc
Q 013259 305 TETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 374 (447)
Q Consensus 305 ~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~~ 374 (447)
.+.++|+.+|.|++ |.|+.+||..+|..+| ...++++++.+|+.+|.|++|.|+++||.+.|..
T Consensus 180 fi~~mf~~~D~Dgd-G~IdfdEFl~lL~~lg-----~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 180 FARRILAIVDYDED-GQLSFSEFSDLIKAFG-----NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCCCC-CeEcHHHHHHHHHHhc-----cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 47889999999999 9999999999999988 7789999999999999999999999999977644
No 65
>PLN02964 phosphatidylserine decarboxylase
Probab=98.02 E-value=9.9e-06 Score=84.16 Aligned_cols=65 Identities=14% Similarity=0.324 Sum_probs=56.7
Q ss_pred HhhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHH---HHHHHHHcCCCCCceeehHHHHHHHh
Q 013259 300 RRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEE---TKDLWVQADIDGNGVVDYKEFQQRIW 373 (447)
Q Consensus 300 ~~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~---~~~~~~~~D~~~~g~i~~~EF~~~~~ 373 (447)
..+.++++++|..+|+|++ |+| |+.+++.+|+ ..+++++ ++.+|+.+|.|++|.|+|+||+.+|.
T Consensus 139 ~kqi~elkeaF~lfD~dgd-G~i----Lg~ilrslG~----~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~ 206 (644)
T PLN02964 139 TQEPESACESFDLLDPSSS-NKV----VGSIFVSCSI----EDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIK 206 (644)
T ss_pred HHHHHHHHHHHHHHCCCCC-CcC----HHHHHHHhCC----CCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence 5566899999999999999 997 9999999982 2577776 89999999999999999999997664
No 66
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.98 E-value=2.7e-05 Score=61.84 Aligned_cols=64 Identities=23% Similarity=0.361 Sum_probs=56.0
Q ss_pred hhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHh
Q 013259 301 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 373 (447)
Q Consensus 301 ~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~ 373 (447)
........+|..+|. ++ |+|+.++.+.+|.+.| ++.+.+.+|....|.|+||.++++||+-+|.
T Consensus 7 ~e~~~y~~~F~~l~~-~~-g~isg~~a~~~f~~S~-------L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QD-GKISGDQAREFFMKSG-------LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp CHHHHHHHHHHCTSS-ST-TEEEHHHHHHHHHHTT-------SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CC-CeEeHHHHHHHHHHcC-------CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 355677889999984 68 9999999999999977 8999999999999999999999999996663
No 67
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.84 E-value=5e-05 Score=67.05 Aligned_cols=69 Identities=20% Similarity=0.347 Sum_probs=52.8
Q ss_pred hhHHHHhhhhcCCCCCCcccHHHHHHHHHHh-ccCCC-----CCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHh
Q 013259 304 LTETDAFAFLKADNDGDYITYSGFCEALEQL-NLTGH-----KHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 373 (447)
Q Consensus 304 ~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~-g~~~~-----~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~ 373 (447)
+.+.=+|+.+|.|++ |+|+..|+-.+++.+ -+.+. ...-.++-+.++++.+|.|+||.|+++||+..+.
T Consensus 100 ekl~w~F~lyD~dgd-G~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 100 EKLKWAFRLYDLDGD-GYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred HHhhhhheeecCCCC-ceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 344556999999999 999999998887764 11111 1222455689999999999999999999997663
No 68
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=2e-05 Score=73.41 Aligned_cols=64 Identities=19% Similarity=0.317 Sum_probs=51.4
Q ss_pred HHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHhcc
Q 013259 307 TDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWKT 375 (447)
Q Consensus 307 ~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~~~ 375 (447)
++-|+.-|.|++ |.++.+||-.+|.--. ...+.+--++.-|...|+|+||+|+++||+.-|+..
T Consensus 166 e~rFk~AD~d~d-g~lt~EEF~aFLHPEe----~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~ 229 (325)
T KOG4223|consen 166 EERFKAADQDGD-GSLTLEEFTAFLHPEE----HPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSH 229 (325)
T ss_pred HHHHhhcccCCC-CcccHHHHHhccChhh----cchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhc
Confidence 456999999999 9999999999874321 133445557889999999999999999999877653
No 69
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.76 E-value=8.7e-05 Score=49.82 Aligned_cols=46 Identities=20% Similarity=0.379 Sum_probs=38.1
Q ss_pred cccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHH
Q 013259 321 YITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQR 371 (447)
Q Consensus 321 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~ 371 (447)
+++..|++.+|+.++ ..++++.+..+|+++|++++|+++.+||+..
T Consensus 1 kmsf~Evk~lLk~~N-----I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~F 46 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMN-----IEMDDEYARQLFQECDKSQSGRLEGEEFEEF 46 (51)
T ss_dssp EBEHHHHHHHHHHTT---------HHHHHHHHHHH-SSSSSEBEHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-----cCcCHHHHHHHHHHhcccCCCCccHHHHHHH
Confidence 468899999999999 7899999999999999999999999999854
No 70
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.68 E-value=0.00012 Score=64.72 Aligned_cols=66 Identities=24% Similarity=0.316 Sum_probs=55.4
Q ss_pred hhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 301 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 301 ~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
....-...+|+.||+|++ |.|+..||-.+|..+- ..-.++.+.=.|+.+|.|+||.|+++|++..+
T Consensus 61 d~~~y~~~vF~~fD~~~d-g~i~F~Efi~als~~~-----rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv 126 (193)
T KOG0044|consen 61 DASKYAELVFRTFDKNKD-GTIDFLEFICALSLTS-----RGTLEEKLKWAFRLYDLDGDGYITKEEMLKIV 126 (193)
T ss_pred CHHHHHHHHHHHhcccCC-CCcCHHHHHHHHHHHc-----CCcHHHHhhhhheeecCCCCceEcHHHHHHHH
Confidence 444556778999999999 9999999888887764 44667778888999999999999999998665
No 71
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=97.67 E-value=6.1e-05 Score=61.60 Aligned_cols=88 Identities=20% Similarity=0.355 Sum_probs=38.3
Q ss_pred EEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCccCC------------chhHhhhhCCC
Q 013259 170 ILIVNTHLLFPHDSSLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRG------------HVYKFLRSQGF 237 (447)
Q Consensus 170 l~v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s------------~~~~~l~~~g~ 237 (447)
|+|+|+ |.|+.. ....+.+.+.++.... ...++||+||||..... ...+.+...++
T Consensus 1 i~i~~v--Y~pp~~--------~~~~~~~~l~~~~~~~--~~~~~Ii~GDFN~~~~~w~~~~~~~~~~~~l~~~~~~~~l 68 (119)
T PF14529_consen 1 ITIISV--YAPPSS--------EREEFFDQLRQLLKNL--PPAPIIIGGDFNAHHPNWDSSNTNSRRGEQLLDWLDSHNL 68 (119)
T ss_dssp EEEEEE--E--TTS---------CHHHHHHHHHHHHCC--TTSSEEEEEE-----GGGT-SCHHHHHHHHHHHHHHHCTE
T ss_pred CEEEEE--ECCCCc--------cHHHHHHHHHHHHHhC--CCCCEEEEeECCCCchhhhhccccchhHHHHHHHhhhcee
Confidence 578888 777643 2233344444444432 22389999999995321 11223333344
Q ss_pred cccccccccCCCCCCCceeecccCCCccccccceeccCcchh
Q 013259 238 VSSYDTAHQYTDADAHKWVSHRNHRGNICGVDFIWLLNPNKY 279 (447)
Q Consensus 238 ~d~~~~~~~~~~~~~~tw~~~~~~~~~~~rIDyI~~~~~~~~ 279 (447)
.+. +. ....+||..... ..+||+||++.....
T Consensus 69 ~~~----~~--~~~~~T~~~~~~----~s~iD~~~~s~~~~~ 100 (119)
T PF14529_consen 69 VDL----NP--PGRPPTFISNSH----GSRIDLILTSDNLLS 100 (119)
T ss_dssp EE---------TT---SEEECCC----EE--EEEEEECCGCC
T ss_pred eee----ec--CCCCCcccCCCC----CceEEEEEECChHHh
Confidence 322 11 122356655442 578999999866543
No 72
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.66 E-value=4.7e-05 Score=43.62 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=22.6
Q ss_pred HHHHhhhhcCCCCCCcccHHHHHHHH
Q 013259 306 ETDAFAFLKADNDGDYITYSGFCEAL 331 (447)
Q Consensus 306 l~~~F~~~D~~~~~G~i~~~el~~~l 331 (447)
|+++|+.+|.|+| |.|+.+||+.++
T Consensus 1 l~~~F~~~D~d~D-G~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGD-GKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSS-SEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCC-CcCCHHHHHHHC
Confidence 5679999999999 999999999864
No 73
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.61 E-value=9.2e-05 Score=42.41 Aligned_cols=24 Identities=42% Similarity=0.735 Sum_probs=21.6
Q ss_pred HHHHHHHcCCCCCceeehHHHHHH
Q 013259 348 TKDLWVQADIDGNGVVDYKEFQQR 371 (447)
Q Consensus 348 ~~~~~~~~D~~~~g~i~~~EF~~~ 371 (447)
++++|+.+|.|+||.|+++||.+.
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 467999999999999999999864
No 74
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.50 E-value=0.00019 Score=70.75 Aligned_cols=71 Identities=21% Similarity=0.353 Sum_probs=60.4
Q ss_pred HhhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHhc
Q 013259 300 RRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 374 (447)
Q Consensus 300 ~~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~~ 374 (447)
+....++.+.|..+| |++ |+|+..||..++.+.++. ......++++.++...+.|.+|.|+|+||+..+..
T Consensus 15 q~El~~l~~kF~~~d-~~~-G~v~~~~l~~~f~k~~~~--~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 15 QEELRELKEKFNKLD-DQK-GYVTVYELPDAFKKAKLP--LGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHHHHHhhc-CCC-CeeehHHhHHHHHHhccc--ccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 556778999999999 999 999999999999987631 12356899999999999999999999999975544
No 75
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.49 E-value=0.00014 Score=71.84 Aligned_cols=52 Identities=15% Similarity=0.365 Sum_probs=45.7
Q ss_pred hhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 302 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 302 ~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
....++.+|+.+|.|++ |+|+.+||. | ++.+|..+|.|+||.|+++||...+
T Consensus 332 ~~~~l~~aF~~~D~dgd-G~Is~~E~~------~------------~~~~F~~~D~d~DG~Is~eEf~~~~ 383 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGD-GFITREEWL------G------------SDAVFDALDLNHDGKITPEEMRAGL 383 (391)
T ss_pred hhHHHHHHHHHhCCCCC-CcCcHHHHH------H------------HHHHHHHhCCCCCCCCcHHHHHHHH
Confidence 44578889999999999 999999983 3 4679999999999999999999766
No 76
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.00064 Score=71.63 Aligned_cols=164 Identities=16% Similarity=0.072 Sum_probs=79.9
Q ss_pred ceeEEecccccccccCCCCCCCCCCCCCccCChhhHHHHHHHHHhhC-------CCcE--EEEccccc--------C---
Q 013259 29 CITCTTFNILAPIYKRLSNEDQNCRESDCRAYWFGRNQRILDWLLYE-------RSSI--ICLQEFWV--------G--- 88 (447)
Q Consensus 29 ~lrV~T~NV~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~i~~~I~~~-------~~DI--I~LQEv~~--------~--- 88 (447)
.+-|.||||.+- .. . ...-+.+||... -||| |+||||-. .
T Consensus 538 ~IfvgTfNvNG~----s~--------~--------~k~~L~~WLfp~s~~~~~~~aDIyviG~eEvVeLnag~iv~As~t 597 (1080)
T KOG0566|consen 538 SIFVGTFNVNGR----SA--------A--------FKDDLSDWLFPISRGKEFSPADIYVIGFEEVVELNAGNIVSASTT 597 (1080)
T ss_pred EEEEEeeeccCc----cc--------c--------chhhHHhhccccccCCcCCcCcEEEEeehhhhhcCccceeccChH
Confidence 467889999951 00 0 123455555433 3775 67899920 0
Q ss_pred -hhhHHHHHHHHhhhcCCcEEEecCCCCCCceE--EEEEecCCceEeeeEEEEecCCC--Cchhhhhhhccccccccccc
Q 013259 89 -NEELVDMYEKRLSDAGYVNFKLARTNNRGDGL--LTAVHKDYFRVVNYRDLLFNDFG--DRVAQLLHVELIDPFSQCRN 163 (447)
Q Consensus 89 -~~~~~~~l~~~l~~~gy~~~~~~~~~~~~~G~--ai~~rs~~~~i~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 163 (447)
..-|...+...|..+.-.|+... ...-.|+ .+|+|....|.+......-..++ +..+. ...+..+.
T Consensus 598 k~~~Wee~i~~~Ln~~~~kYvlL~--s~QlvGv~L~iF~r~~~~p~Ik~V~~~tkKTGfGG~tgN-------KGAVAIrf 668 (1080)
T KOG0566|consen 598 KRRFWEEKILKTLNRYKNKYVLLR--SEQLVGVCLLLFIRPDHAPYIKDVAGDTKKTGFGGATGN-------KGAVAIRF 668 (1080)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEe--hhhhheeeEEEEEcccccchhhhcccceeecccccccCC-------CceEEEEE
Confidence 12255566666664433333321 1222354 45556665555543322221111 10000 00011233
Q ss_pred CCCCCeEEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCc
Q 013259 164 GDLRQEILIVNTHLLFPHDSSLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGS 223 (447)
Q Consensus 164 ~~~g~~l~v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~ 223 (447)
......|+++|.||.++.. ....|..-...+.+-|.=-....-....-|+.|||||-.
T Consensus 669 ~~~~TsfCFv~SHlAAG~s--nv~ERn~DY~tI~r~l~Fp~Gr~I~~HD~ifW~GDFNYR 726 (1080)
T KOG0566|consen 669 VYHATSFCFVCSHLAAGQS--NVEERNEDYKTIARKLRFPRGRMIFSHDYIFWLGDFNYR 726 (1080)
T ss_pred EeccccEEEEecccccccc--hHhhhhhhHHHHHHhccccCCccccCCceEEEeccccee
Confidence 3456789999999977442 334455444444433321000000134569999999964
No 77
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.00019 Score=67.10 Aligned_cols=69 Identities=16% Similarity=0.280 Sum_probs=58.2
Q ss_pred HhhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHhc
Q 013259 300 RRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 374 (447)
Q Consensus 300 ~~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~~ 374 (447)
.+....+..+|..+|.+++ |+|+.+||+.-+...- .....+++.+-+...|.|.||.|+|+|+...++.
T Consensus 73 ee~~~rl~~l~~~iD~~~D-gfv~~~El~~wi~~s~-----k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~ 141 (325)
T KOG4223|consen 73 EESQERLGKLVPKIDSDSD-GFVTESELKAWIMQSQ-----KKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYG 141 (325)
T ss_pred chhHHHHHHHHhhhcCCCC-CceeHHHHHHHHHHHH-----HHHHHHHHHHHHHHhccCccceeeHHHhhhhhhh
Confidence 4567788999999999999 9999999998776543 4455667788888999999999999999987765
No 78
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.35 E-value=9.5e-05 Score=59.87 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=44.8
Q ss_pred hhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHH
Q 013259 302 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQ 369 (447)
Q Consensus 302 ~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~ 369 (447)
....+.=.|..+|.|+| |.|+..||+.+...+. ..+..++.+++.+|.|+||.|++.|+.
T Consensus 52 ~~~~~~W~F~~LD~n~d-~~L~~~El~~l~~~l~-------~~e~C~~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKD-GVLDRSELKPLRRPLM-------PPEHCARPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp GHHHHHHHHHHH--T-S-SEE-TTTTGGGGSTTS-------TTGGGHHHHHHHH-TT-SSSEEHHHHH
T ss_pred hhhhhhhhHhhhcCCCC-CccCHHHHHHHHHHHh-------hhHHHHHHHHHHcCCCCCCCCCHHHHc
Confidence 44455556999999999 9999999998865443 667789999999999999999999996
No 79
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.04 E-value=0.00092 Score=40.45 Aligned_cols=27 Identities=22% Similarity=0.550 Sum_probs=22.8
Q ss_pred HHHHHHHHcCCCCCceeehHHHHHHHh
Q 013259 347 ETKDLWVQADIDGNGVVDYKEFQQRIW 373 (447)
Q Consensus 347 ~~~~~~~~~D~~~~g~i~~~EF~~~~~ 373 (447)
+++.+|+.+|.|+||.|+++||...+.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 478899999999999999999996653
No 80
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.0019 Score=50.79 Aligned_cols=62 Identities=23% Similarity=0.418 Sum_probs=46.2
Q ss_pred HhhhhcCCCCCCcccHHHHHHHHHHhc---cC-CCCCC-CCHHHHHHHH----HHcCCCCCceeehHHHHHH
Q 013259 309 AFAFLKADNDGDYITYSGFCEALEQLN---LT-GHKHG-LADEETKDLW----VQADIDGNGVVDYKEFQQR 371 (447)
Q Consensus 309 ~F~~~D~~~~~G~i~~~el~~~l~~~g---~~-~~~~~-~~~~~~~~~~----~~~D~~~~g~i~~~EF~~~ 371 (447)
.|...|-|++ |+|+--||..++.-.- -. +++.+ .++.|++.|+ +.-|.|+||.|+|.||++.
T Consensus 72 YF~MHDldkn-n~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 72 YFSMHDLDKN-NFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhccCcC-CcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 5889999999 9999999999886431 01 22444 4566665555 5568999999999999864
No 81
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.92 E-value=0.0016 Score=71.36 Aligned_cols=69 Identities=14% Similarity=0.214 Sum_probs=60.0
Q ss_pred hhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCC--CHH-----HHHHHHHHcCCCCCceeehHHHHHHHhcc
Q 013259 303 SLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGL--ADE-----ETKDLWVQADIDGNGVVDYKEFQQRIWKT 375 (447)
Q Consensus 303 ~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~--~~~-----~~~~~~~~~D~~~~g~i~~~EF~~~~~~~ 375 (447)
..++.-+|+.||++.+ |.++..+|+.||+.+| ..+ .++ +++.+|..+|++.+|.|+..||+++|..+
T Consensus 2252 L~EFs~~fkhFDkek~-G~Ldhq~F~sCLrslg-----Y~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2252 LKEFSMMFKHFDKEKN-GRLDHQHFKSCLRSLG-----YDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HHHHHHHHHHhchhhc-cCCcHHHHHHHHHhcC-----CCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 3466678999999999 9999999999999998 555 233 79999999999999999999999999775
Q ss_pred Cc
Q 013259 376 TW 377 (447)
Q Consensus 376 ~~ 377 (447)
..
T Consensus 2326 ET 2327 (2399)
T KOG0040|consen 2326 ET 2327 (2399)
T ss_pred cc
Confidence 54
No 82
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=96.77 E-value=0.0028 Score=61.02 Aligned_cols=109 Identities=21% Similarity=0.320 Sum_probs=61.9
Q ss_pred CCeEEEEEecccCCCCCCCchhhHHHH--HHHHHHHHHHHHHcC---CCCCcEEEeecCCCccCCc--------------
Q 013259 167 RQEILIVNTHLLFPHDSSLSLVRLHQV--YKILQHVESYQKEHN---LKPIPIILCGDWNGSKRGH-------------- 227 (447)
Q Consensus 167 g~~l~v~n~HL~~~~~~~~~~~R~~q~--~~l~~~l~~~~~~~~---~~~~pvIl~GDFN~~p~s~-------------- 227 (447)
-..+.++++|+..- .....++... ...-..++....+.. ....|++.|||.|..+...
T Consensus 166 ~e~~~l~~~y~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~v~~gd~nvs~~~i~~~~~~~~~~~~~~ 242 (335)
T KOG1294|consen 166 FEIFILINTYVPNI---GGGLVNLVYRILDRWDKEIEEKRKKQSSSKNLKAPVVICGDLNVSHEEIDPSKPLVSPAGNTL 242 (335)
T ss_pred ecceeeccccCccc---ccccchhhhhhhhhhHHHHHHHhhhccccccccCcceeccccccchhhccccccccccccCCc
Confidence 45677888866321 1222233222 223333333333322 2235899999999864311
Q ss_pred -----------hh-HhhhhCC-CcccccccccCCCCCCCceeecc--cCCCccccccceeccCcch
Q 013259 228 -----------VY-KFLRSQG-FVSSYDTAHQYTDADAHKWVSHR--NHRGNICGVDFIWLLNPNK 278 (447)
Q Consensus 228 -----------~~-~~l~~~g-~~d~~~~~~~~~~~~~~tw~~~~--~~~~~~~rIDyI~~~~~~~ 278 (447)
.+ ..+.+.| ++|+|...+......+..|.... ...+...++||+.++.+..
T Consensus 243 ~~~~~t~e~R~~~~~~~~~~~~~iDt~r~~~~~~~~~~t~Wk~~~~~r~~~~~~r~dy~~Vsk~~~ 308 (335)
T KOG1294|consen 243 SNAGFTPEERDSFFAELLEKGPLIDTYRELHKDQKKAYTFWKYMPNGRQRGHGERCDYILVSKPGP 308 (335)
T ss_pred CCCCCCHHHhhhHHHhhccCCcceeehhhhcCCccccccchhhccccccCCCCCceeEEEecCcCC
Confidence 12 3344555 88999888776554566676543 2335567999999987654
No 83
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.62 E-value=0.0013 Score=58.76 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=49.7
Q ss_pred hhhhHHHHhhhhcCCCCCCcccHHHHHHHH-HHhccCCCCCCC--CHHHHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 302 ASLTETDAFAFLKADNDGDYITYSGFCEAL-EQLNLTGHKHGL--ADEETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 302 ~~~~l~~~F~~~D~~~~~G~i~~~el~~~l-~~~g~~~~~~~~--~~~~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
....|..+|...|.|.| |+||..|+++-+ +++. ..+ ..++-+..|+..|.|+||.|+++||.--.
T Consensus 99 srrklmviFsKvDVNtD-rkisAkEmqrwImekta-----EHfqeameeSkthFraVDpdgDGhvsWdEykvkF 166 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTD-RKISAKEMQRWIMEKTA-----EHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKF 166 (362)
T ss_pred HHHHHHHHHhhcccCcc-ccccHHHHHHHHHHHHH-----HHHHHHHhhhhhheeeeCCCCCCceehhhhhhHH
Confidence 44577889999999999 999999998755 4433 222 22345667889999999999999996433
No 84
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.11 E-value=0.0072 Score=34.78 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=25.1
Q ss_pred hHHHHhhhhcCCCCCCcccHHHHHHHHHH
Q 013259 305 TETDAFAFLKADNDGDYITYSGFCEALEQ 333 (447)
Q Consensus 305 ~l~~~F~~~D~~~~~G~i~~~el~~~l~~ 333 (447)
+++++|..+|.+++ |.|+..||..+++.
T Consensus 1 ~~~~~f~~~d~~~~-g~i~~~e~~~~~~~ 28 (29)
T smart00054 1 ELKEAFRLFDKDGD-GKIDFEEFKDLLKA 28 (29)
T ss_pred CHHHHHHHHCCCCC-CcEeHHHHHHHHHh
Confidence 36789999999999 99999999999875
No 85
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.79 E-value=0.023 Score=43.20 Aligned_cols=66 Identities=20% Similarity=0.328 Sum_probs=53.3
Q ss_pred hHHHHhhhhcCCCCCCcccHHHHHHHHHHh-ccCCCCCCCCHHHHHHHHHHcCCC----CCceeehHHHHHHHhccC
Q 013259 305 TETDAFAFLKADNDGDYITYSGFCEALEQL-NLTGHKHGLADEETKDLWVQADID----GNGVVDYKEFQQRIWKTT 376 (447)
Q Consensus 305 ~l~~~F~~~D~~~~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~~~~~~D~~----~~g~i~~~EF~~~~~~~~ 376 (447)
++..+|..+-. +. +.||.++|+..|+.- |. ...+.++++.+|..+..+ ..+.+++++|..+|..+.
T Consensus 1 ei~~if~~ys~-~~-~~mt~~~f~~FL~~eQ~~----~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DK-EYMTAEEFRRFLREEQGE----PRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TS-SSEEHHHHHHHHHHTSS-----TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CC-CcCCHHHHHHHHHHHhcc----ccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 46788999954 67 899999999999865 30 246899999999998655 468999999999887654
No 86
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=95.73 E-value=0.056 Score=52.74 Aligned_cols=84 Identities=18% Similarity=0.323 Sum_probs=59.6
Q ss_pred HHHHhHHHHHHHhhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHh-ccCCCCC--------------------------
Q 013259 289 EAVFGMFKCLLRRASLTETDAFAFLKADNDGDYITYSGFCEALEQL-NLTGHKH-------------------------- 341 (447)
Q Consensus 289 ~~v~~~~~~~~~~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~-g~~~~~~-------------------------- 341 (447)
+..+..+...+.+...+|...|+.+|.+++ |+|+......+|+++ |+.=.|.
T Consensus 449 eSAlk~Lrerl~s~~sdL~~eF~~~D~~ks-G~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~ 527 (631)
T KOG0377|consen 449 ESALKELRERLRSHRSDLEDEFRKYDPKKS-GKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDT 527 (631)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHhcChhhc-CeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhh
Confidence 344445555556677789999999999999 999999999999863 3220000
Q ss_pred -CCCH--------------HHHHHHHHHcCCCCCceeehHHHHHHHhc
Q 013259 342 -GLAD--------------EETKDLWVQADIDGNGVVDYKEFQQRIWK 374 (447)
Q Consensus 342 -~~~~--------------~~~~~~~~~~D~~~~g~i~~~EF~~~~~~ 374 (447)
.+.+ ..++.+|+.+|.|++|.|+.+||.. +|.
T Consensus 528 e~~~~ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~-a~~ 574 (631)
T KOG0377|consen 528 EVILEEAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRT-AWK 574 (631)
T ss_pred hhHHHHHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHH-HHH
Confidence 0001 1246788899999999999999984 443
No 87
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.65 E-value=0.013 Score=33.62 Aligned_cols=26 Identities=35% Similarity=0.685 Sum_probs=22.8
Q ss_pred HHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 347 ETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 347 ~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
+++.+++.+|.+++|.|+++||...+
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHH
Confidence 36789999999999999999998655
No 88
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=95.49 E-value=0.041 Score=48.65 Aligned_cols=62 Identities=16% Similarity=0.310 Sum_probs=48.5
Q ss_pred hHHHHhhhhcCCCCCCc-ccHHHHHHHHHHhccCCCCCCC-CHHHHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 305 TETDAFAFLKADNDGDY-ITYSGFCEALEQLNLTGHKHGL-ADEETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 305 ~l~~~F~~~D~~~~~G~-i~~~el~~~l~~~g~~~~~~~~-~~~~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
-...+|..||.+++ |. |+.+++-.+|..+- .+- .++.++-.++.+|.+++|.|+.+|+.+.+
T Consensus 67 ~~~rI~~~f~~~~~-~~~v~F~~Fv~~ls~f~-----~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv 130 (187)
T KOG0034|consen 67 LADRIIDRFDTDGN-GDPVDFEEFVRLLSVFS-----PKASKREKLRFAFRVYDLDGDGFISREELKQIL 130 (187)
T ss_pred HHHHHHHHHhccCC-CCccCHHHHHHHHhhhc-----CCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHH
Confidence 44567888888888 77 99999888887764 333 33478888999999999999999998655
No 89
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=95.27 E-value=0.014 Score=56.77 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=47.6
Q ss_pred HhhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHH------hccCCCCCCCCHH-----HHH--HHHHHcCCCCCceeehH
Q 013259 300 RRASLTETDAFAFLKADNDGDYITYSGFCEALEQ------LNLTGHKHGLADE-----ETK--DLWVQADIDGNGVVDYK 366 (447)
Q Consensus 300 ~~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~------~g~~~~~~~~~~~-----~~~--~~~~~~D~~~~g~i~~~ 366 (447)
.......+-+|+.||.||+ |-|+.+||....+- +|.. |...++.. ++. -...-|.++++++++++
T Consensus 229 S~p~~~F~IAFKMFD~dgn-G~IdkeEF~~v~~li~sQ~~~g~~-hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~d 306 (489)
T KOG2643|consen 229 SIPERNFRIAFKMFDLDGN-GEIDKEEFETVQQLIRSQTSVGVR-HRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSID 306 (489)
T ss_pred ccCcccceeeeeeeecCCC-CcccHHHHHHHHHHHHhcccccee-cccCccccceehhhhhhhHHHHhhccCCCccccHH
Confidence 4556677789999999999 99999999887643 2311 00011111 121 13455788999999999
Q ss_pred HHHHHH
Q 013259 367 EFQQRI 372 (447)
Q Consensus 367 EF~~~~ 372 (447)
||++.+
T Consensus 307 eF~~F~ 312 (489)
T KOG2643|consen 307 EFLKFQ 312 (489)
T ss_pred HHHHHH
Confidence 998766
No 90
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.20 E-value=0.039 Score=60.26 Aligned_cols=81 Identities=26% Similarity=0.405 Sum_probs=63.9
Q ss_pred hhHHHHhHHHHHHHhhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehH
Q 013259 287 WSEAVFGMFKCLLRRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYK 366 (447)
Q Consensus 287 w~~~v~~~~~~~~~~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~ 366 (447)
.++.++..++..+.-+...-...|+.+|.||. |.||..||.++|... ...++.+++-++.....|.+...+|+
T Consensus 4040 nvemilkffdmflklkdltssdtfkeydpdgk-giiskkdf~kame~~------k~ytqse~dfllscae~dend~~~y~ 4112 (5019)
T KOG2243|consen 4040 NVEMILKFFDMFLKLKDLTSSDTFKEYDPDGK-GIISKKDFHKAMEGH------KHYTQSEIDFLLSCAEADENDMFDYE 4112 (5019)
T ss_pred cHHHHHHHHHHHHHHhhccccccchhcCCCCC-ccccHHHHHHHHhcc------ccchhHHHHHHHHhhccCccccccHH
Confidence 34555555555554444444567999999999 999999999999864 34789999999999999999999999
Q ss_pred HHHHHHhc
Q 013259 367 EFQQRIWK 374 (447)
Q Consensus 367 EF~~~~~~ 374 (447)
+|+.....
T Consensus 4113 dfv~rfhe 4120 (5019)
T KOG2243|consen 4113 DFVDRFHE 4120 (5019)
T ss_pred HHHHHhcC
Confidence 99977643
No 91
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=95.18 E-value=0.024 Score=39.03 Aligned_cols=32 Identities=19% Similarity=0.395 Sum_probs=28.2
Q ss_pred hhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHH
Q 013259 301 RASLTETDAFAFLKADNDGDYITYSGFCEALEQ 333 (447)
Q Consensus 301 ~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~ 333 (447)
-...++..+|..+|.|++ |+|+.+||..+|..
T Consensus 22 ~s~~e~~~l~~~~D~~~~-G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 22 LSEEEVDRLFREFDTDGD-GYISFDEFISMMQR 53 (54)
T ss_dssp SCHHHHHHHHHHHTTSSS-SSEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcccCCC-CCCCHHHHHHHHHh
Confidence 345679999999999999 99999999999864
No 92
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=93.77 E-value=0.085 Score=49.06 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=37.2
Q ss_pred cCCCCCeEEEEEecccCCCCC---------CCchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCccCCch
Q 013259 163 NGDLRQEILIVNTHLLFPHDS---------SLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRGHV 228 (447)
Q Consensus 163 ~~~~g~~l~v~n~HL~~~~~~---------~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~ 228 (447)
....+..|.++|+||.....+ -+...|..-...+++.+.... .+..|+++.||||.--+...
T Consensus 75 w~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~~----~~~~~lF~fGDfNyRld~~~ 145 (356)
T PTZ00312 75 LRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFI----SPSDPLFIFGDFNVRLDGHN 145 (356)
T ss_pred EEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhcc----CCCCcEEEeccceeeecccc
Confidence 344567899999999763211 123334444444444333322 26789999999998655433
No 93
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=93.76 E-value=0.088 Score=37.78 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=23.9
Q ss_pred HHHHHHHcCCCCCceeehHHHHHHHhc
Q 013259 348 TKDLWVQADIDGNGVVDYKEFQQRIWK 374 (447)
Q Consensus 348 ~~~~~~~~D~~~~g~i~~~EF~~~~~~ 374 (447)
++.+|+.+|.|++|.|+.+||...+..
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~ 28 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKH 28 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHH
Confidence 678999999999999999999976633
No 94
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.61 E-value=0.086 Score=54.87 Aligned_cols=66 Identities=23% Similarity=0.386 Sum_probs=58.8
Q ss_pred hhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHhc
Q 013259 301 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 374 (447)
Q Consensus 301 ~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~~ 374 (447)
......+++|..+|+..+ |++|-..-+.+|..-| ++...+-.|..--|.|+||+++-+||+-.|+.
T Consensus 192 ~~klKY~QlFNa~Dktrs-G~Lsg~qaR~aL~qS~-------Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 192 HNKLKYRQLFNALDKTRS-GYLSGQQARSALGQSG-------LPQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred hhhhHHHHHhhhcccccc-cccccHHHHHHHHhcC-------CchhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 455678999999999999 9999999999998866 88889999999999999999999999876643
No 95
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=92.81 E-value=0.046 Score=53.37 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=42.9
Q ss_pred CcccHHHHHHHHHHh-ccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHhc
Q 013259 320 DYITYSGFCEALEQL-NLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 374 (447)
Q Consensus 320 G~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~~ 374 (447)
+.|+..+|+++.... | ..+++.-++-+|.-||.|+||.++.+||+..|-+
T Consensus 403 ~~i~~~~f~raa~~vtG-----veLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 403 ASIDEKTFQRAAKVVTG-----VELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred CCCCHHHHHHHHHHhcC-----cccccceeeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 778999998887654 7 7788888888999999999999999999976643
No 96
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=92.61 E-value=0.05 Score=39.49 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=38.5
Q ss_pred hhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCC-------CceeehHHHHHHH
Q 013259 302 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDG-------NGVVDYKEFQQRI 372 (447)
Q Consensus 302 ~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~-------~g~i~~~EF~~~~ 372 (447)
..+.+.++|+.+ .++. ++||..||++.|. .++++-+++.+..-. .|..||..|+..|
T Consensus 4 s~eqv~~aFr~l-A~~K-pyVT~~dLr~~l~------------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGK-PYVTEEDLRRSLT------------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp TCHHHHHHHHHH-CTSS-SCEEHHHHHHHS-------------CCCHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred CHHHHHHHHHHH-HcCC-CcccHHHHHHHcC------------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 456788999999 7788 9999999998853 222344444433222 2789999998543
No 97
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.11 E-value=0.23 Score=50.30 Aligned_cols=64 Identities=30% Similarity=0.440 Sum_probs=57.8
Q ss_pred hhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHh
Q 013259 304 LTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 373 (447)
Q Consensus 304 ~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~ 373 (447)
...+.-|..+|.|+. |+++..++.++|+..+ .+.+++.+.+++++.|.+.+|.+...||.+.+.
T Consensus 593 ~~~~~rf~~lD~~k~-~~~~i~~v~~vlk~~~-----~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKK-AYQAIADVLKVLKSEN-----VGWDEDRLHEELQEADENLNGFVELREFLQLMS 656 (680)
T ss_pred HHHHHHHHhhcchHH-HHHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHH
Confidence 345567999999999 9999999999999988 789999999999999999999999999997663
No 98
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=91.85 E-value=0.37 Score=47.48 Aligned_cols=56 Identities=20% Similarity=0.090 Sum_probs=35.2
Q ss_pred CCCeEEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCc
Q 013259 166 LRQEILIVNTHLLFPHDSSLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGS 223 (447)
Q Consensus 166 ~g~~l~v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~ 223 (447)
....++++|.||.+.. .....|....+.+..-|.--....-.....++++||||..
T Consensus 163 ~~t~~cFv~shlaag~--~N~eeR~~Dy~~I~~~i~f~~g~~I~~hdti~w~GDlNyR 218 (460)
T COG5411 163 ERTSFCFVNSHLAAGV--NNIEERIFDYRSIASNICFSRGLRIYDHDTIFWLGDLNYR 218 (460)
T ss_pred ecCCcEEEecchhccc--ccHHHHHHHHHHHHHheecCCCceecccceEEEecccCce
Confidence 4567999999998754 3456677777777665532100000123459999999953
No 99
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=91.54 E-value=0.76 Score=39.64 Aligned_cols=69 Identities=12% Similarity=0.192 Sum_probs=56.7
Q ss_pred hHHHHhhhhcCCCCCCcccHHHHHHHHHHhccC-----------------------------------------------
Q 013259 305 TETDAFAFLKADNDGDYITYSGFCEALEQLNLT----------------------------------------------- 337 (447)
Q Consensus 305 ~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~----------------------------------------------- 337 (447)
.|++-...||.|+| |.|..-|--..++.+|+.
T Consensus 8 ~LQqHvaFFDrd~D-GiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 8 VLQQHVAFFDRDKD-GIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred HHhhhhceeCCCCC-eeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 45566678999999 999999999999998876
Q ss_pred -CCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHhc
Q 013259 338 -GHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 374 (447)
Q Consensus 338 -~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~~ 374 (447)
+.--.+.++..++|+..+++.+.+.+++.|..+++..
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 1223477788999999999988899999999965533
No 100
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=91.50 E-value=0.24 Score=46.15 Aligned_cols=71 Identities=21% Similarity=0.256 Sum_probs=47.2
Q ss_pred ccccCCCCCeEEEEEecccCC---------CCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCccCCc-hh
Q 013259 160 QCRNGDLRQEILIVNTHLLFP---------HDSSLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRGH-VY 229 (447)
Q Consensus 160 ~~~~~~~g~~l~v~n~HL~~~---------~~~~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~-~~ 229 (447)
..+....+..+.++|.||..- +...++..|..++..+++.+..-. .....++|.||||..-++. ..
T Consensus 161 ~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~~----~~~~~~fVfGdfNfrLds~s~l 236 (391)
T KOG1976|consen 161 LARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEEG----LRNDAIFVFGDFNFRLDSTSLL 236 (391)
T ss_pred ceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhhc----cCceEEEEecccccccchHHHH
Confidence 456667789999999999331 012345668788888877665432 2556799999999976653 33
Q ss_pred Hhhhh
Q 013259 230 KFLRS 234 (447)
Q Consensus 230 ~~l~~ 234 (447)
..|..
T Consensus 237 n~l~a 241 (391)
T KOG1976|consen 237 NYLAA 241 (391)
T ss_pred HHHhc
Confidence 44433
No 101
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=90.79 E-value=0.25 Score=46.48 Aligned_cols=64 Identities=11% Similarity=0.035 Sum_probs=52.7
Q ss_pred hhhhHHHHhhhhcCCCCCCcccHHHHHHHHHH-hccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHh
Q 013259 302 ASLTETDAFAFLKADNDGDYITYSGFCEALEQ-LNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 373 (447)
Q Consensus 302 ~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~-~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~ 373 (447)
....|+-+|+.|+.+.| |.+...+|.-+|+. +| +.+-.+-.++...+...+|+|.|.+|.+.+.
T Consensus 294 t~~iiq~afk~f~v~eD-g~~ge~~ls~ilq~~lg-------v~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 294 TPVIIQYAFKRFSVAED-GISGEHILSLILQVVLG-------VEVLRVPVLFPSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred cHHHHHHHHHhcccccc-cccchHHHHHHHHHhcC-------cceeeccccchhhhcccCcceeHHHHHHHHH
Confidence 44566778999999999 99999999999876 46 4555577789999999999999999987663
No 102
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=90.71 E-value=0.29 Score=46.10 Aligned_cols=97 Identities=11% Similarity=0.126 Sum_probs=68.7
Q ss_pred ccceeccCcchhhhhhhhhhhHHHHhHHHHHH-Hh---------h----hhhHHHHhhhhcCCCCCCcccHHHHH---HH
Q 013259 268 VDFIWLLNPNKYRKLLKASWSEAVFGMFKCLL-RR---------A----SLTETDAFAFLKADNDGDYITYSGFC---EA 330 (447)
Q Consensus 268 IDyI~~~~~~~~~~~~~~sw~~~v~~~~~~~~-~~---------~----~~~l~~~F~~~D~~~~~G~i~~~el~---~~ 330 (447)
.|-.=++.-.+..++.++.+...+++.+...| .. . ...+.=-|..+|+|.+ +.|...|.+ .+
T Consensus 283 ~dp~kvR~l~gC~e~KKteFL~~Ll~aL~Tdmv~s~~~as~gr~~e~DeeRvv~w~F~qLdkN~n-n~i~rrEwKpFK~~ 361 (421)
T KOG4578|consen 283 VDPKKVRRLNGCPEKKKTEFLTSLLDALKTDMVMSGINASNGRKSEPDEERVVHWYFNQLDKNSN-NDIERREWKPFKRV 361 (421)
T ss_pred cccccccccCCCCcchhhHHHHHHHHHHhhhhhhhcccccCCcccCCChhheeeeeeeeeccccc-CccchhhcchHHHH
Confidence 45555666666667777777777777666555 11 0 1112224999999999 999999954 44
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 331 LEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 331 l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
|.+-. -...-.+++++..|.|+|-+|+++|+..-|
T Consensus 362 l~k~s-------~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL 396 (421)
T KOG4578|consen 362 LLKKS-------KPRKCSRKFFKYCDLNKDKKISLDEWRGCL 396 (421)
T ss_pred HHhhc-------cHHHHhhhcchhcccCCCceecHHHHhhhh
Confidence 54422 455678899999999999999999998544
No 103
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=90.61 E-value=1.2 Score=38.23 Aligned_cols=63 Identities=10% Similarity=0.275 Sum_probs=45.3
Q ss_pred HHHhhhh---cCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 307 TDAFAFL---KADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 307 ~~~F~~~---D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
+++|..| -..+. ..++..-|.++|+..||-+ ..++..+++-+|..+-..+..+|+|++|+..|
T Consensus 2 ~~~F~~f~~fG~~~~-~~m~~~~F~Kl~kD~~i~d--~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL 67 (154)
T PF05517_consen 2 EAVFKAFASFGKKNG-TEMDSKNFAKLCKDCGIID--KKLTSTDVDIIFSKVKAKGARKITFEQFLEAL 67 (154)
T ss_dssp HHHHHHHHCSSTSTS-SEEEHHHHHHHHHHTSS----SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHH
T ss_pred HHHHHHHHHhcCCcc-ccccHHHHHHHHHHcCCCC--CCCchHHHHHHHHHhhcCCCcccCHHHHHHHH
Confidence 4455444 34444 6899999999999876432 34899999999999866667789999999777
No 104
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=90.53 E-value=0.36 Score=45.09 Aligned_cols=65 Identities=12% Similarity=0.226 Sum_probs=47.6
Q ss_pred hHHHHhhhhcCCCCCCcccHHHHHHHHHH----hccCCCCCCCCHHHH-----------HHHHHHcCCCCCceeehHHHH
Q 013259 305 TETDAFAFLKADNDGDYITYSGFCEALEQ----LNLTGHKHGLADEET-----------KDLWVQADIDGNGVVDYKEFQ 369 (447)
Q Consensus 305 ~l~~~F~~~D~~~~~G~i~~~el~~~l~~----~g~~~~~~~~~~~~~-----------~~~~~~~D~~~~g~i~~~EF~ 369 (447)
.-+..|...|.|+| |+++..||..++.. +- . ..-.++++ +.+|+++|.|.|..|+.+||+
T Consensus 245 dPKTFF~LHD~NsD-GfldeqELEaLFtkELEKvY---d-pkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL 319 (442)
T KOG3866|consen 245 DPKTFFALHDLNSD-GFLDEQELEALFTKELEKVY---D-PKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFL 319 (442)
T ss_pred CcchheeeeccCCc-ccccHHHHHHHHHHHHHHhc---C-CCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHH
Confidence 33557999999999 99999999888653 21 0 11222222 457899999999999999999
Q ss_pred HHHhc
Q 013259 370 QRIWK 374 (447)
Q Consensus 370 ~~~~~ 374 (447)
..--+
T Consensus 320 ~~t~~ 324 (442)
T KOG3866|consen 320 NDTDN 324 (442)
T ss_pred hhhhh
Confidence 76533
No 105
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=90.50 E-value=0.67 Score=35.70 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=27.6
Q ss_pred hhHHHHhhhhcCCCCCCcccHHHHHHHHHHh
Q 013259 304 LTETDAFAFLKADNDGDYITYSGFCEALEQL 334 (447)
Q Consensus 304 ~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~ 334 (447)
.++.++|+.+|.|+| |.|+.+||..++..+
T Consensus 47 ~~v~~mi~~~D~d~D-G~I~F~EF~~l~~~l 76 (89)
T cd05022 47 EGLEEKMKNLDVNQD-SKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHhCCCCC-CCCcHHHHHHHHHHH
Confidence 689999999999999 999999999888765
No 106
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.38 E-value=0.82 Score=47.99 Aligned_cols=49 Identities=22% Similarity=0.388 Sum_probs=43.4
Q ss_pred CCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 316 DNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 316 ~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
-+. |+|+-..-+.++-.-| ++..-+-+|..-.|.|+||++|..||.-.|
T Consensus 27 p~~-gfitg~qArnfflqS~-------LP~~VLaqIWALsDldkDGrmdi~EfSIAm 75 (1118)
T KOG1029|consen 27 PGQ-GFITGDQARNFFLQSG-------LPTPVLAQIWALSDLDKDGRMDIREFSIAM 75 (1118)
T ss_pred CCC-CccchHhhhhhHHhcC-------CChHHHHHHHHhhhcCccccchHHHHHHHH
Confidence 445 9999999999998877 788889999999999999999999998555
No 107
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.17 E-value=0.52 Score=46.83 Aligned_cols=60 Identities=22% Similarity=0.371 Sum_probs=53.4
Q ss_pred hHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 305 TETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 305 ~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
-+..-|+.+-.|-. |+|+-.--+.++.+-. +.-+|+..|....|.|.||-++..||+..+
T Consensus 232 YYvnQFrtvQpDp~-gfisGsaAknFFtKSk-------lpi~ELshIWeLsD~d~DGALtL~EFcAAf 291 (737)
T KOG1955|consen 232 YYVNQFRTVQPDPH-GFISGSAAKNFFTKSK-------LPIEELSHIWELSDVDRDGALTLSEFCAAF 291 (737)
T ss_pred HHHhhhhcccCCcc-cccccHHHHhhhhhcc-------CchHHHHHHHhhcccCccccccHHHHHhhH
Confidence 34556888889999 9999999999998854 888999999999999999999999999777
No 108
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=89.68 E-value=0.33 Score=46.05 Aligned_cols=60 Identities=17% Similarity=0.129 Sum_probs=49.9
Q ss_pred hHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHhc
Q 013259 305 TETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 374 (447)
Q Consensus 305 ~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~~ 374 (447)
++.=+|..+|.|.| |.|+..||+.+- ++ -.+.-|+.+|...|...||.|+-+|+..-.+.
T Consensus 251 s~gWMFnklD~N~D-l~Ld~sEl~~I~--ld-------knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 251 SLGWMFNKLDTNYD-LLLDQSELRAIE--LD-------KNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhccccccc-cccCHHHhhhhh--cc-------CchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 44557999999999 999999998763 22 45778999999999999999999999954443
No 109
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=88.99 E-value=0.5 Score=36.71 Aligned_cols=33 Identities=12% Similarity=0.277 Sum_probs=28.8
Q ss_pred hhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhc
Q 013259 302 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLN 335 (447)
Q Consensus 302 ~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g 335 (447)
....+.++++.+|.|++ |.|+.+||..++..+.
T Consensus 51 ~~~~v~~i~~elD~n~d-G~Idf~EF~~l~~~l~ 83 (93)
T cd05026 51 DPMLVDKIMNDLDSNKD-NEVDFNEFVVLVAALT 83 (93)
T ss_pred CHHHHHHHHHHhCCCCC-CCCCHHHHHHHHHHHH
Confidence 34579999999999999 9999999999987763
No 110
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=88.92 E-value=0.35 Score=49.97 Aligned_cols=58 Identities=22% Similarity=0.231 Sum_probs=34.3
Q ss_pred CCeEEEEEecccCCCCCCCchhhHHHHHHHHHHHH--HHHHHc----CCCCCcEEEeecCCCcc
Q 013259 167 RQEILIVNTHLLFPHDSSLSLVRLHQVYKILQHVE--SYQKEH----NLKPIPIILCGDWNGSK 224 (447)
Q Consensus 167 g~~l~v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~--~~~~~~----~~~~~pvIl~GDFN~~p 224 (447)
+..|+++|+||.++........|..+...|+..+. ...... -.....+|++||||---
T Consensus 419 ~Ts~cFVn~HLAAg~~~~~~~rRN~D~~~I~~~l~F~~~~~~~~~~~I~dhD~vFWlGDLNYRI 482 (621)
T PLN03191 419 QSRLCFVCSHLTSGHKDGAEQRRNADVYEIIRRTRFSSVLDTDQPQTIPSHDQIFWFGDLNYRL 482 (621)
T ss_pred CcEEEEEEeccccccccchHHHHHHHHHHHHhccccCcccccCCCccccccceEEEecCccccc
Confidence 46799999999876543334456666666654321 000000 01234699999999743
No 111
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=88.44 E-value=0.45 Score=38.62 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=25.3
Q ss_pred hhhHHHHhhhhcCCCCCCcccHHHHHHHHH
Q 013259 303 SLTETDAFAFLKADNDGDYITYSGFCEALE 332 (447)
Q Consensus 303 ~~~l~~~F~~~D~~~~~G~i~~~el~~~l~ 332 (447)
...+..+|..+|.|+| |+||.+|++.++.
T Consensus 79 e~~~~~f~~~~D~n~D-g~IS~~Ef~~cl~ 107 (116)
T cd00252 79 EHCIKPFFESCDLDKD-GSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCC-CCCCHHHHHHHHh
Confidence 3456779999999999 9999999999983
No 112
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=88.28 E-value=1.2 Score=34.07 Aligned_cols=32 Identities=13% Similarity=0.244 Sum_probs=28.4
Q ss_pred hhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhc
Q 013259 303 SLTETDAFAFLKADNDGDYITYSGFCEALEQLN 335 (447)
Q Consensus 303 ~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g 335 (447)
...+..+|+.+|.|++ |.|+.+||..++..+.
T Consensus 50 ~~~v~~i~~~~D~d~d-G~I~f~eF~~~~~~~~ 81 (88)
T cd05030 50 QKAIDKIFEDLDTNQD-GQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHcCCCCC-CcCcHHHHHHHHHHHH
Confidence 5678999999999999 9999999999887653
No 113
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=88.00 E-value=1.2 Score=34.35 Aligned_cols=32 Identities=13% Similarity=0.177 Sum_probs=28.1
Q ss_pred hhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhc
Q 013259 303 SLTETDAFAFLKADNDGDYITYSGFCEALEQLN 335 (447)
Q Consensus 303 ~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g 335 (447)
...+.++++.+|.|+| |.|+.+||..++..+.
T Consensus 51 ~~~~~~ll~~~D~d~D-G~I~f~EF~~l~~~l~ 82 (89)
T cd05023 51 PGVLDRMMKKLDLNSD-GQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHcCCCCC-CcCcHHHHHHHHHHHH
Confidence 3578899999999999 9999999999887653
No 114
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=87.34 E-value=0.94 Score=42.81 Aligned_cols=63 Identities=8% Similarity=0.081 Sum_probs=53.3
Q ss_pred hhHHHHhhhhcCCCCCCcccHHHHHHHHHHh-ccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 304 LTETDAFAFLKADNDGDYITYSGFCEALEQL-NLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 304 ~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
..++..|..||.+++ |.++..|--..+.-+ | ...+.+.++--++.|+.+.||.+.-.+|.-.+
T Consensus 259 d~l~~~f~LFde~~t-g~~D~re~v~~lavlc~-----p~~t~~iiq~afk~f~v~eDg~~ge~~ls~il 322 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTT-GNGDYRETVKTLAVLCG-----PPVTPVIIQYAFKRFSVAEDGISGEHILSLIL 322 (412)
T ss_pred hhhhhhhheecCCCC-CcccHHHHhhhheeeeC-----CCCcHHHHHHHHHhcccccccccchHHHHHHH
Confidence 567889999999999 999988877766554 5 77888999999999999999999999887333
No 115
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=87.14 E-value=1.2 Score=44.22 Aligned_cols=66 Identities=11% Similarity=0.176 Sum_probs=50.6
Q ss_pred HhhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHH-------hccCCCCCCCC-HHHHHHHHHHcCCCCCceeehHHHHH
Q 013259 300 RRASLTETDAFAFLKADNDGDYITYSGFCEALEQ-------LNLTGHKHGLA-DEETKDLWVQADIDGNGVVDYKEFQQ 370 (447)
Q Consensus 300 ~~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~-------~g~~~~~~~~~-~~~~~~~~~~~D~~~~g~i~~~EF~~ 370 (447)
+.....+.=+|+.+|.+++ |.|+..||+-+.+. +|. +.+. ++-+.+|+.++-....++|+..+|..
T Consensus 347 k~t~~SleYwFrclDld~~-G~Lt~~el~~fyeeq~~rm~~~~~----e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 347 KDTPASLEYWFRCLDLDGD-GILTLNELRYFYEEQLQRMECMGQ----EALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred CCCccchhhheeeeeccCC-CcccHHHHHHHHHHHHHHHHhcCC----CcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 5666788889999999999 99999999766432 341 2222 55567788888877789999999974
No 116
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=86.65 E-value=1.1 Score=40.57 Aligned_cols=61 Identities=18% Similarity=0.328 Sum_probs=51.3
Q ss_pred HHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHhc
Q 013259 308 DAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 374 (447)
Q Consensus 308 ~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~~ 374 (447)
+.=..+|.|.| |.++..||...+.-+. ..+.-.++..+|..-|.+++.+++.+|.++.-|-
T Consensus 285 EFeElIDsNhD-GivTaeELe~y~dP~n-----~~~alne~~~~ma~~d~n~~~~Ls~eell~r~~~ 345 (362)
T KOG4251|consen 285 EFEELIDSNHD-GIVTAEELEDYVDPQN-----FRLALNEVNDIMALTDANNDEKLSLEELLERDWL 345 (362)
T ss_pred HHHHHhhcCCc-cceeHHHHHhhcCchh-----hhhhHHHHHHHHhhhccCCCcccCHHHHHHHHhh
Confidence 33357899999 9999999999876666 5577788999999999999999999999876654
No 117
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=86.62 E-value=0.86 Score=34.99 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=28.7
Q ss_pred hhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhc
Q 013259 302 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLN 335 (447)
Q Consensus 302 ~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g 335 (447)
...++.++|+.+|.|++ |.|+.+||-..+..+.
T Consensus 49 t~~ev~~m~~~~D~d~d-G~Idf~EFv~lm~~l~ 81 (88)
T cd05029 49 QDAEIAKLMEDLDRNKD-QEVNFQEYVTFLGALA 81 (88)
T ss_pred CHHHHHHHHHHhcCCCC-CCCcHHHHHHHHHHHH
Confidence 55688999999999999 9999999988887653
No 118
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=85.89 E-value=0.52 Score=36.61 Aligned_cols=33 Identities=12% Similarity=0.277 Sum_probs=29.6
Q ss_pred hhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhc
Q 013259 302 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLN 335 (447)
Q Consensus 302 ~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g 335 (447)
....+..+|+.+|.|++ |.|+.+||..++..++
T Consensus 49 s~~ei~~~~~~~D~~~d-g~I~f~eF~~l~~~~~ 81 (94)
T cd05031 49 DPMAVDKIMKDLDQNRD-GKVNFEEFVSLVAGLS 81 (94)
T ss_pred cHHHHHHHHHHhCCCCC-CcCcHHHHHHHHHHHH
Confidence 44678899999999999 9999999999998877
No 119
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=85.89 E-value=1.1 Score=30.22 Aligned_cols=30 Identities=13% Similarity=0.073 Sum_probs=24.8
Q ss_pred hhHHHHhhhhcCCCCCCcccHHHHHHHHHHh
Q 013259 304 LTETDAFAFLKADNDGDYITYSGFCEALEQL 334 (447)
Q Consensus 304 ~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~ 334 (447)
.-...+|+..|+.++ |.+..+|+.++.+.+
T Consensus 21 ~yA~~LFq~~D~s~~-g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 21 EYARQLFQECDKSQS-GRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHHH-SSSS-SEBEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCC-CCccHHHHHHHHHHh
Confidence 345669999999999 999999999988764
No 120
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=85.63 E-value=1.3 Score=34.11 Aligned_cols=33 Identities=12% Similarity=0.181 Sum_probs=28.7
Q ss_pred hhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhc
Q 013259 302 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLN 335 (447)
Q Consensus 302 ~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g 335 (447)
....+.++|+.+|.|+| |.|+..|+-.++..+.
T Consensus 46 d~~~vd~im~~LD~n~D-g~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 46 DPMAVDKIMKDLDDCRD-GKVGFQSFFSLIAGLL 78 (91)
T ss_pred CHHHHHHHHHHhCCCCC-CcCcHHHHHHHHHHHH
Confidence 45679999999999999 9999999998876653
No 121
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=85.01 E-value=1.2 Score=34.63 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=24.4
Q ss_pred HHHHHHHHHcCCCCCceeehHHHHHHHhc
Q 013259 346 EETKDLWVQADIDGNGVVDYKEFQQRIWK 374 (447)
Q Consensus 346 ~~~~~~~~~~D~~~~g~i~~~EF~~~~~~ 374 (447)
.++..+|..+|.|++|.|+++|+...+..
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~ 38 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLK 38 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 34677899999999999999999976643
No 122
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=84.78 E-value=1 Score=44.78 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHcCCCCCceeehHHHHHHHhccCcccccccCCCcccccccc
Q 013259 341 HGLADEETKDLWVQADIDGNGVVDYKEFQQRIWKTTWSDQRNDLNDEDEDGFVK 394 (447)
Q Consensus 341 ~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (447)
....+.++..+|+.+|.|+||.|+++||+. ...++...|.+..|.++.+|.
T Consensus 329 ~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~---~~~~F~~~D~d~DG~Is~eEf 379 (391)
T PRK12309 329 GEAFTHAAQEIFRLYDLDGDGFITREEWLG---SDAVFDALDLNHDGKITPEEM 379 (391)
T ss_pred cChhhHHHHHHHHHhCCCCCCcCcHHHHHH---HHHHHHHhCCCCCCCCcHHHH
Confidence 556778899999999999999999999973 233456666677777766654
No 123
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=84.56 E-value=2.6 Score=32.46 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=28.7
Q ss_pred hhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhc
Q 013259 302 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLN 335 (447)
Q Consensus 302 ~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g 335 (447)
....+.++|+.+|.|++ |.|+.+||..++..+.
T Consensus 50 s~~~v~~i~~~~D~d~~-G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 50 DADAVDKIMKELDENGD-GEVDFQEFVVLVAALT 82 (92)
T ss_pred CHHHHHHHHHHHCCCCC-CcCcHHHHHHHHHHHH
Confidence 44678999999999999 9999999999887653
No 124
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=83.60 E-value=1.4 Score=43.71 Aligned_cols=60 Identities=23% Similarity=0.308 Sum_probs=45.6
Q ss_pred HHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHc----CCCCCceeehHHHHHHHhc
Q 013259 306 ETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQA----DIDGNGVVDYKEFQQRIWK 374 (447)
Q Consensus 306 l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~----D~~~~g~i~~~EF~~~~~~ 374 (447)
+..-|-.+|+|+| |.|+.++|+..-. .-++.--++.+|.++ -.-.+|+++|++|+-.+..
T Consensus 280 iy~kFweLD~Dhd-~lidk~~L~ry~d--------~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA 343 (493)
T KOG2562|consen 280 IYCKFWELDTDHD-GLIDKEDLKRYGD--------HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILA 343 (493)
T ss_pred HHHHHhhhccccc-cccCHHHHHHHhc--------cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHH
Confidence 3334889999999 9999999987633 336677788999843 3446899999999976643
No 125
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=83.20 E-value=1.9 Score=29.39 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=25.7
Q ss_pred HhhhhhHHHHhhhhcCCCCCCcccHHHHHHHH
Q 013259 300 RRASLTETDAFAFLKADNDGDYITYSGFCEAL 331 (447)
Q Consensus 300 ~~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l 331 (447)
......+..+|..+|.+++ |.|+.+||..++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~-~~l~~~ef~~~~ 62 (63)
T cd00051 32 GLSEEEIDEMIREVDKDGD-GKIDFEEFLELM 62 (63)
T ss_pred CCCHHHHHHHHHHhCCCCC-CeEeHHHHHHHh
Confidence 3445567789999999999 999999998765
No 126
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=82.65 E-value=2.7 Score=32.24 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=27.8
Q ss_pred hhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHh
Q 013259 302 ASLTETDAFAFLKADNDGDYITYSGFCEALEQL 334 (447)
Q Consensus 302 ~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~ 334 (447)
...++.++++.+|.|++ |.|+.+||..++..+
T Consensus 49 ~~~~v~~~i~~~D~n~d-G~v~f~eF~~li~~~ 80 (88)
T cd05027 49 EQEVVDKVMETLDSDGD-GECDFQEFMAFVAMV 80 (88)
T ss_pred CHHHHHHHHHHhCCCCC-CcCcHHHHHHHHHHH
Confidence 44568999999999999 999999998887654
No 127
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=81.82 E-value=1.9 Score=30.51 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=27.4
Q ss_pred hhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHh
Q 013259 302 ASLTETDAFAFLKADNDGDYITYSGFCEALEQL 334 (447)
Q Consensus 302 ~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~ 334 (447)
....+.++|+.+|.+++ |.|+.+|+..++..+
T Consensus 31 ~~~~~~~i~~~~d~~~~-g~i~~~ef~~~~~~~ 62 (67)
T cd00052 31 PRSVLAQIWDLADTDKD-GKLDKEEFAIAMHLI 62 (67)
T ss_pred CHHHHHHHHHHhcCCCC-CcCCHHHHHHHHHHH
Confidence 34568889999999999 999999999887654
No 128
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=81.65 E-value=2.1 Score=45.24 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=58.1
Q ss_pred hhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 301 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 301 ~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
....-+..+|+..|++++ |.++..+...++..+. ..+.+..+..++++.|..+++++...+|++.-
T Consensus 133 ~~~~wi~~~~~~ad~~~~-~~~~~~~~~~~~~~~n-----~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~ 198 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKN-GHMSFDEVLDLLKQLN-----VQLSESKARRLFKESDNSQTGKLEEEEFVKFR 198 (746)
T ss_pred hHHHHHHHHHHHHccccc-cccchhhHHHHHHHHH-----HhhhHHHHHHHHHHHHhhccceehHHHHHHHH
Confidence 344567788999999999 9999999999999988 66889999999999999999999999998644
No 129
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=79.89 E-value=1.8 Score=32.91 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCC--CCCceeehHHHHHHH
Q 013259 346 EETKDLWVQADI--DGNGVVDYKEFQQRI 372 (447)
Q Consensus 346 ~~~~~~~~~~D~--~~~g~i~~~EF~~~~ 372 (447)
+++...|..+|. |++|.|+.+||..++
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l 36 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELL 36 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHH
Confidence 457778999999 899999999999766
No 130
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=79.32 E-value=3.5 Score=44.71 Aligned_cols=68 Identities=12% Similarity=-0.051 Sum_probs=55.0
Q ss_pred hhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCH-----HHHHHHHHHcCCCCCceeehHHHHHHHhc
Q 013259 301 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLAD-----EETKDLWVQADIDGNGVVDYKEFQQRIWK 374 (447)
Q Consensus 301 ~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~-----~~~~~~~~~~D~~~~g~i~~~EF~~~~~~ 374 (447)
....+++.+|..+|+... |.++.+++..+|..+| .+..+ ++.-.++...|.+.-|+++|.||..-|.+
T Consensus 744 ~v~~ElrAle~~~~~~d~-~aa~~e~~~~~Lmslg-----~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 744 YVLDELRALENEQDKIDG-GAASPEELLRCLMSLG-----YNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHHHHhHHHHhhc-ccCCHHHHHHHHHhcC-----cccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 345688999999999999 9999999999999999 55553 23455677778888899999999976643
No 131
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=76.74 E-value=8.2 Score=38.82 Aligned_cols=65 Identities=22% Similarity=0.345 Sum_probs=36.2
Q ss_pred HhhhhhHHHHh---hhhcCCCCCCcccHHHHHHHHHH-hccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHH
Q 013259 300 RRASLTETDAF---AFLKADNDGDYITYSGFCEALEQ-LNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQ 369 (447)
Q Consensus 300 ~~~~~~l~~~F---~~~D~~~~~G~i~~~el~~~l~~-~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~ 369 (447)
+...++|+.+| ...++++. -+.+.++|-...-. ++. .++.++.++-+-...|..+||.|+|+||+
T Consensus 29 ra~~~eLr~if~~~as~e~~ge-~~mt~edFv~~ylgL~~e----~~~n~~~v~Lla~iaD~tKDglisf~eF~ 97 (694)
T KOG0751|consen 29 RADPKELRSIFLKYASIEKNGE-SYMTPEDFVRRYLGLYNE----SNFNDKIVRLLASIADQTKDGLISFQEFR 97 (694)
T ss_pred cCChHHHHHHHHHHhHHhhccc-cccCHHHHHHHHHhhccc----ccCChHHHHHHHhhhhhcccccccHHHHH
Confidence 45556666665 34455666 66777776554332 231 22444444444455566677777777776
No 132
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=72.67 E-value=4.2 Score=32.25 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=27.0
Q ss_pred hhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHh
Q 013259 302 ASLTETDAFAFLKADNDGDYITYSGFCEALEQL 334 (447)
Q Consensus 302 ~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~ 334 (447)
....|.+++...|.|++ |+++.+||.-+|.-+
T Consensus 41 ~~~~L~~IW~LaD~~~d-G~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 41 PRDVLAQIWNLADIDND-GKLDFEEFAIAMHLI 72 (104)
T ss_dssp SHHHHHHHHHHH-SSSS-SEEEHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhcCCCC-CcCCHHHHHHHHHHH
Confidence 44688999999999999 999999999988653
No 133
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=68.20 E-value=12 Score=24.80 Aligned_cols=42 Identities=19% Similarity=0.127 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHhc
Q 013259 324 YSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 374 (447)
Q Consensus 324 ~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~~ 374 (447)
.+|...+|..+| +++.++++.+..+.. ...++.+|.++..+.
T Consensus 3 ~~d~~~AL~~LG-------y~~~e~~~av~~~~~--~~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 3 LEDALEALISLG-------YSKAEAQKAVSKLLE--KPGMDVEELIKQALK 44 (47)
T ss_dssp HHHHHHHHHHTT-------S-HHHHHHHHHHHHH--STTS-HHHHHHHHHC
T ss_pred HHHHHHHHHHcC-------CCHHHHHHHHHHhhc--CCCCCHHHHHHHHHh
Confidence 468889999999 899999999999875 344667877765443
No 134
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=66.21 E-value=12 Score=37.73 Aligned_cols=54 Identities=19% Similarity=0.200 Sum_probs=42.0
Q ss_pred hhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHh
Q 013259 312 FLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 373 (447)
Q Consensus 312 ~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~ 373 (447)
.-|.-+| |-||.+||+.+=.-+. -++.--...+.-||+.++|.++|++|...+-
T Consensus 82 iaD~tKD-glisf~eF~afe~~lC-------~pDal~~~aFqlFDr~~~~~vs~~~~~~if~ 135 (694)
T KOG0751|consen 82 IADQTKD-GLISFQEFRAFESVLC-------APDALFEVAFQLFDRLGNGEVSFEDVADIFG 135 (694)
T ss_pred hhhhccc-ccccHHHHHHHHhhcc-------CchHHHHHHHHHhcccCCCceehHHHHHHHh
Confidence 4566788 9999999986633333 3455667789999999999999999986653
No 135
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=66.16 E-value=6.2 Score=34.85 Aligned_cols=27 Identities=22% Similarity=0.517 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 346 EETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 346 ~~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
++.+.+|+.+|.+.||.||+.|...+|
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mm 125 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMM 125 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHH
Confidence 356789999999999999999998555
No 136
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=65.58 E-value=4.4 Score=39.15 Aligned_cols=58 Identities=17% Similarity=0.237 Sum_probs=40.9
Q ss_pred eEEEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCccCCchhHhh
Q 013259 169 EILIVNTHLLFPHDSSLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRGHVYKFL 232 (447)
Q Consensus 169 ~l~v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l 232 (447)
.+.+.++|+.|.+- ....|..|...+++.+.+... ..-+.++|||||..|.+..+-..
T Consensus 139 ~li~~~~~~f~~p~--~~~er~r~t~~~lnri~e~~~----~~w~~l~~~l~n~e~gd~~~va~ 196 (378)
T COG5239 139 GLILAVTHLFWHPY--GYYERFRQTYILLNRIGEKDN----IAWVCLFVGLFNKEPGDTPYVAN 196 (378)
T ss_pred hhhhhhhHhhcccc--eeehhhhHHHHHHHHHhhhhh----cchhheeeeeccCCCCCceeEEe
Confidence 46778899988553 344588888888887766432 22457899999998887655444
No 137
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=64.22 E-value=7.4 Score=31.22 Aligned_cols=32 Identities=28% Similarity=0.639 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 341 HGLADEETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 341 ~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
+.+++++.+.+..++=.|..|.|.|.||+..+
T Consensus 2 qiLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kf 33 (118)
T PF08976_consen 2 QILTDEQFDRLWNEMPVNAKGRLKYQEFLSKF 33 (118)
T ss_dssp ----HHHHHHHHTTS-B-TTS-EEHHHHHHHT
T ss_pred ccccHHHhhhhhhhCcCCccCCEeHHHHHHHc
Confidence 45899999999999999999999999999654
No 138
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=62.53 E-value=7 Score=35.86 Aligned_cols=25 Identities=36% Similarity=0.610 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhhCCCcEEEEccccc
Q 013259 63 GRNQRILDWLLYERSSIICLQEFWV 87 (447)
Q Consensus 63 ~R~~~i~~~I~~~~~DII~LQEv~~ 87 (447)
.|.+.|++.-......||||||.|.
T Consensus 100 ~r~kaiieaaa~agvniiclqeawt 124 (387)
T KOG0808|consen 100 DRLKAIIEAAAVAGVNIICLQEAWT 124 (387)
T ss_pred HHHHHHHHHHHhcCccEEEeehhhc
Confidence 4778888888888999999999973
No 139
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.81 E-value=3 Score=45.89 Aligned_cols=63 Identities=19% Similarity=0.335 Sum_probs=55.4
Q ss_pred hhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 302 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 302 ~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
....+.++|...|++++ |.|+-.+....+...| +....+..+....|..+.|.|+++||.-.|
T Consensus 281 d~~~~~~if~q~d~~~d-G~I~s~~~~~~f~~~g-------l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~ 343 (847)
T KOG0998|consen 281 DKQKYSKIFSQVDKDND-GSISSNEARNIFLPFG-------LSKPRLAHVWLLADTQNTGTLSKDEFALAM 343 (847)
T ss_pred HHHHHHHHHHhccccCC-CcccccccccccccCC-------CChhhhhhhhhhcchhccCcccccccchhh
Confidence 44456669999999999 9999999999988777 888899999999999999999999997555
No 140
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=54.96 E-value=6.1 Score=34.74 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=40.5
Q ss_pred hhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHH
Q 013259 310 FAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQ 370 (447)
Q Consensus 310 F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~ 370 (447)
|-.+|+.--+|++|..||.-+-.- .-+-+.-+...+...|.|+||.|+.+|+-.
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap-------~ipme~c~~~f~e~cd~~nd~~ial~ew~~ 246 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAP-------LIPMEHCTTRFFETCDLDNDKYIALDEWAG 246 (259)
T ss_pred eccccCCCccccccccccccccCC-------cccHHhhchhhhhcccCCCCCceeHHHhhc
Confidence 667887553399999998644211 223456688899999999999999999973
No 141
>PF14658 EF-hand_9: EF-hand domain
Probab=54.91 E-value=18 Score=25.98 Aligned_cols=32 Identities=9% Similarity=0.193 Sum_probs=27.5
Q ss_pred hhhhHHHHhhhhcCCCCCCcccHHHHHHHHHH
Q 013259 302 ASLTETDAFAFLKADNDGDYITYSGFCEALEQ 333 (447)
Q Consensus 302 ~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~ 333 (447)
...+|..+-+.+|+++.+|.|+.++|..+|+.
T Consensus 33 ~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 33 EESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 34588999999999887699999999999875
No 142
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=53.07 E-value=26 Score=24.96 Aligned_cols=31 Identities=10% Similarity=0.068 Sum_probs=28.5
Q ss_pred CcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHc
Q 013259 320 DYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQA 355 (447)
Q Consensus 320 G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 355 (447)
=-|+.+-++.++..+| .++++..++++++.+
T Consensus 30 Ppine~mir~M~~QMG-----~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 30 PPINEKMIRAMMMQMG-----RKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCHHHHHHHHHHhC-----CCccHHHHHHHHHHH
Confidence 3799999999999999 999999999999875
No 143
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=52.65 E-value=26 Score=22.86 Aligned_cols=32 Identities=28% Similarity=0.268 Sum_probs=23.6
Q ss_pred hhhhHHHHhhhhc-CCCCCCcccHHHHHHHHHH
Q 013259 302 ASLTETDAFAFLK-ADNDGDYITYSGFCEALEQ 333 (447)
Q Consensus 302 ~~~~l~~~F~~~D-~~~~~G~i~~~el~~~l~~ 333 (447)
....+..+|+.+- ++|+...++..||+.+|+.
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 3456677887775 3565478999999999875
No 144
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=52.56 E-value=16 Score=38.12 Aligned_cols=60 Identities=22% Similarity=0.253 Sum_probs=49.3
Q ss_pred hhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHH
Q 013259 302 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEF 368 (447)
Q Consensus 302 ~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF 368 (447)
...-+..+|+.+|.+++ |.|+..+|..+|..+- ..-.-+.+.-+++.+|.+++ ..+-+|-
T Consensus 553 s~~~~~rlF~l~D~s~~-g~Ltf~~lv~gL~~l~-----~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMT-GLLTFKDLVSGLSILK-----AGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHhcccCCc-ceeEHHHHHHHHHHHH-----hhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 34466789999999999 9999999999998875 34555678888999999998 7777765
No 145
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=50.91 E-value=48 Score=22.43 Aligned_cols=40 Identities=15% Similarity=0.128 Sum_probs=32.8
Q ss_pred hhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 013259 302 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQ 354 (447)
Q Consensus 302 ~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~ 354 (447)
....|.+.|.. + .+.+..++..+...+| ++..+|..+|..
T Consensus 11 ~~~~Le~~f~~-----~-~~P~~~~~~~la~~~~-------l~~~qV~~WF~n 50 (59)
T cd00086 11 QLEELEKEFEK-----N-PYPSREEREELAKELG-------LTERQVKIWFQN 50 (59)
T ss_pred HHHHHHHHHHh-----C-CCCCHHHHHHHHHHHC-------cCHHHHHHHHHH
Confidence 34566777776 5 7999999999999988 899999999864
No 146
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.85 E-value=14 Score=35.89 Aligned_cols=67 Identities=16% Similarity=0.279 Sum_probs=51.7
Q ss_pred hhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHH-HHcCCCCCceeehHHHHHHHh
Q 013259 301 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLW-VQADIDGNGVVDYKEFQQRIW 373 (447)
Q Consensus 301 ~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~-~~~D~~~~g~i~~~EF~~~~~ 373 (447)
+....++++|+..|+.+. |+|+.+-|+..|..++ ...++.+.-.++ +.+|..+-|.|=.+.|+....
T Consensus 306 ~~s~q~rR~f~a~d~~d~-nfis~s~~~~vm~~~N-----~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~ 373 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDN-NFISCSGLQIVMTALN-----RLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFF 373 (449)
T ss_pred CCCHHHHhhhhccCccCC-CeeecHHHHHHHHHhc-----ccccCHHHHHHhcCccChhhcceEEecccccccc
Confidence 456788999999999999 9999999999999987 445555444444 566888778887777775443
No 147
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=50.13 E-value=1.1e+02 Score=23.62 Aligned_cols=67 Identities=10% Similarity=0.185 Sum_probs=40.8
Q ss_pred hhHHHHhhhhcCCCCCCcccHHHHHHHHHH-------hccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHhcc
Q 013259 304 LTETDAFAFLKADNDGDYITYSGFCEALEQ-------LNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWKT 375 (447)
Q Consensus 304 ~~l~~~F~~~D~~~~~G~i~~~el~~~l~~-------~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~~~ 375 (447)
+.++-+|+.+ .|++ |.++..-|...|+. +| .+......+..++..|... ..+-.|+.++|+..|+..
T Consensus 3 dKyRylFsli-sd~~-g~~~~~~l~~lL~d~lqip~~vg-E~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSN-GCMDQRKLGLLLHDVLQIPRAVG-EGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHH-S-TT-S-B-HHHHHHHHHHHHHHHHHTT--GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHHH-cCCC-CCCcHHHHHHHHHHHHHHHHHhC-ccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 3567788888 6888 99999998888764 23 0011224677788888876 345689999999877553
No 148
>PRK01844 hypothetical protein; Provisional
Probab=49.02 E-value=1e+02 Score=22.51 Aligned_cols=42 Identities=7% Similarity=-0.005 Sum_probs=33.2
Q ss_pred HHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHc
Q 013259 307 TDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQA 355 (447)
Q Consensus 307 ~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 355 (447)
++.|+..=+++. -|+.+-++..+..+| .++++..++++++..
T Consensus 26 rk~~~k~lk~NP--pine~mir~Mm~QMG-----qkPSekki~Q~m~~m 67 (72)
T PRK01844 26 RKYMMNYLQKNP--PINEQMLKMMMMQMG-----QKPSQKKINQMMSAM 67 (72)
T ss_pred HHHHHHHHHHCC--CCCHHHHHHHHHHhC-----CCccHHHHHHHHHHH
Confidence 334443333443 799999999999999 999999999999887
No 149
>PRK00523 hypothetical protein; Provisional
Probab=47.69 E-value=1.1e+02 Score=22.39 Aligned_cols=43 Identities=14% Similarity=0.086 Sum_probs=33.7
Q ss_pred HHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcC
Q 013259 307 TDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQAD 356 (447)
Q Consensus 307 ~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D 356 (447)
++.|+..=+++. -|+.+-++.++..+| .++++..++++++.+.
T Consensus 27 rk~~~k~l~~NP--pine~mir~M~~QMG-----qKPSekki~Q~m~~mk 69 (72)
T PRK00523 27 KKMFKKQIRENP--PITENMIRAMYMQMG-----RKPSESQIKQVMRSVK 69 (72)
T ss_pred HHHHHHHHHHCc--CCCHHHHHHHHHHhC-----CCccHHHHHHHHHHHH
Confidence 334443333443 799999999999999 9999999999998873
No 150
>PLN02230 phosphoinositide phospholipase C 4
Probab=46.94 E-value=60 Score=34.29 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=48.6
Q ss_pred hhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcC-------CCCCceeehHHHHHHHhcc
Q 013259 303 SLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQAD-------IDGNGVVDYKEFQQRIWKT 375 (447)
Q Consensus 303 ~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D-------~~~~g~i~~~EF~~~~~~~ 375 (447)
-.++..+|..+- ++. ++++.++|..+|..-. +.....+.++++.++..+- .-+.+.++++.|..+|+..
T Consensus 28 ~~ei~~lf~~~s-~~~-~~mt~~~l~~FL~~~Q--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 28 VADVRDLFEKYA-DGD-AHMSPEQLQKLMAEEG--GGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred cHHHHHHHHHHh-CCC-CccCHHHHHHHHHHhC--CCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 357888898884 555 7999999999998753 1112346777788886542 1234569999999888764
No 151
>PLN02952 phosphoinositide phospholipase C
Probab=46.73 E-value=1.1e+02 Score=32.53 Aligned_cols=68 Identities=7% Similarity=-0.039 Sum_probs=48.2
Q ss_pred hhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcC-------CCCCceeehHHHHHHHhcc
Q 013259 303 SLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQAD-------IDGNGVVDYKEFQQRIWKT 375 (447)
Q Consensus 303 ~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D-------~~~~g~i~~~EF~~~~~~~ 375 (447)
-.++..+|..+- .+. +.++.++|..+|.... ++ ...+.++++.++..+- ..+.+.++++.|...|+..
T Consensus 37 r~ei~~lf~~~~-~~~-~~mt~~~l~~FL~~~Q--~e-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s~ 111 (599)
T PLN02952 37 PDDVKDVFCKFS-VGG-GHMGADQLRRFLVLHQ--DE-LDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLYD 111 (599)
T ss_pred hHHHHHHHHHHh-CCC-CccCHHHHHHHHHHhC--CC-cCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHcCc
Confidence 468899999885 355 6899999999998763 11 2366777777766441 1123468999999888754
No 152
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=45.38 E-value=80 Score=25.08 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=42.7
Q ss_pred HHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHH
Q 013259 307 TDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQ 370 (447)
Q Consensus 307 ~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~ 370 (447)
..+|-.++.-++ -..+..+++.+|...| ...+.+.++.++..+ +|+ +.+|.+.
T Consensus 4 vaAYLL~~lgGn-~~psa~DikkIl~sVG-----~E~d~e~i~~visel----~GK-~i~ElIA 56 (112)
T KOG3449|consen 4 VAAYLLAVLGGN-ASPSASDIKKILESVG-----AEIDDERINLVLSEL----KGK-DIEELIA 56 (112)
T ss_pred HHHHHHHHhcCC-CCCCHHHHHHHHHHhC-----cccCHHHHHHHHHHh----cCC-CHHHHHH
Confidence 345566666666 7789999999999999 889999999999998 345 7788763
No 153
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=45.00 E-value=25 Score=27.50 Aligned_cols=52 Identities=21% Similarity=0.178 Sum_probs=37.4
Q ss_pred CcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHhc
Q 013259 320 DYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 374 (447)
Q Consensus 320 G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~~ 374 (447)
|.++..|...+-.-+. ....+++++.+.++..+........++.+|.+.+..
T Consensus 14 G~v~~~E~~~i~~~l~---~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 14 GEYDEEERAAIDRLLA---ERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred CCCCHHHHHHHHHHHH---HHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999766543321 001378888999998888777777899999876543
No 154
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.74 E-value=58 Score=23.60 Aligned_cols=41 Identities=10% Similarity=0.012 Sum_probs=32.6
Q ss_pred HhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcC
Q 013259 309 AFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQAD 356 (447)
Q Consensus 309 ~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D 356 (447)
.|...=+|+. -|+.+-++.++..+| .++++..++++++..-
T Consensus 28 ~~~k~lk~NP--pine~~iR~M~~qmG-----qKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 28 QMKKQLKDNP--PINEEMIRMMMAQMG-----QKPSEKKINQVMRSII 68 (71)
T ss_pred HHHHHHhhCC--CCCHHHHHHHHHHhC-----CCchHHHHHHHHHHHH
Confidence 3433334554 799999999999999 9999999999998753
No 155
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=44.01 E-value=21 Score=28.73 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=20.1
Q ss_pred hhHHHHhhhhcCCCCCCcccHHHHHHH
Q 013259 304 LTETDAFAFLKADNDGDYITYSGFCEA 330 (447)
Q Consensus 304 ~~l~~~F~~~D~~~~~G~i~~~el~~~ 330 (447)
.-++..|+..|.|+| |.||..|...+
T Consensus 88 ~C~~~F~~~CD~n~d-~~Is~~EW~~C 113 (113)
T PF10591_consen 88 HCARPFFRSCDVNKD-GKISLDEWCNC 113 (113)
T ss_dssp GGHHHHHHHH-TT-S-SSEEHHHHHHH
T ss_pred HHHHHHHHHcCCCCC-CCCCHHHHccC
Confidence 356778999999999 99999998653
No 156
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=43.63 E-value=69 Score=27.85 Aligned_cols=74 Identities=12% Similarity=0.071 Sum_probs=45.9
Q ss_pred hhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCC--CCCCHHHHHHHHHHcCCCCCceeehHHHHHHHhccCccc
Q 013259 303 SLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHK--HGLADEETKDLWVQADIDGNGVVDYKEFQQRIWKTTWSD 379 (447)
Q Consensus 303 ~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~--~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~~~~~~~ 379 (447)
...+.++|..+++.+. +.+|..|+.++++.-..-..+ ---..-|-..+. .+-++.||.+.-+.-. .+++.+++.
T Consensus 95 p~kFe~iF~kya~~~~-d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y-~L~~d~dG~l~Ke~iR-~vYDGSlF~ 170 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGP-DALTLRELWRMLKGNRNANDPFGWFAAFFEWGALY-ILAKDKDGFLSKEDIR-GVYDGSLFY 170 (174)
T ss_pred HHHHHHHHHHhCCCCC-CCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHH-HHHcCcCCcEeHHHHh-hhcchHHHH
Confidence 3467789999999888 999999999999862100000 111112222222 2336778999877654 777766553
No 157
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=40.94 E-value=38 Score=28.45 Aligned_cols=56 Identities=13% Similarity=0.311 Sum_probs=40.9
Q ss_pred hhhcCCCCCCcccHHHHHHHHHHhccCCCCCC-CCHHHHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 311 AFLKADNDGDYITYSGFCEALEQLNLTGHKHG-LADEETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 311 ~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~-~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
..|-.||. |.+|.++|-.++.-+. +. +-+-.+.-.++.+|-|+|+.|--++....+
T Consensus 78 e~FSeDG~-GnlsfddFlDmfSV~s-----E~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l 134 (189)
T KOG0038|consen 78 EVFSEDGR-GNLSFDDFLDMFSVFS-----EMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTL 134 (189)
T ss_pred HHhccCCC-CcccHHHHHHHHHHHH-----hhChHHhhhhheeEEeecCCCCcccHHHHHHHH
Confidence 34457999 9999999999887764 21 222334556788899999999888776544
No 158
>PLN02222 phosphoinositide phospholipase C 2
Probab=40.23 E-value=73 Score=33.59 Aligned_cols=67 Identities=9% Similarity=0.091 Sum_probs=49.1
Q ss_pred hhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCC-CCCceeehHHHHHHHhcc
Q 013259 303 SLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADI-DGNGVVDYKEFQQRIWKT 375 (447)
Q Consensus 303 ~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~-~~~g~i~~~EF~~~~~~~ 375 (447)
..++..+|..+-. + +.++.++|..+|.... ++ ...+.+.++.+|..+.. -..+.++++.|..+|+..
T Consensus 24 ~~ei~~if~~~~~--~-~~mt~~~l~~FL~~~Q--~~-~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 24 PREIKTIFEKYSE--N-GVMTVDHLHRFLIDVQ--KQ-DKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred cHHHHHHHHHhcC--C-CCcCHHHHHHHHHHhc--CC-ccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 3477788887742 6 8999999999998763 01 23577888899987632 235679999999888653
No 159
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=38.87 E-value=30 Score=35.93 Aligned_cols=61 Identities=11% Similarity=0.097 Sum_probs=41.0
Q ss_pred hhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHH
Q 013259 301 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQ 369 (447)
Q Consensus 301 ~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~ 369 (447)
....-+..+|..||.|+| |-++..||+.++...+- +.|..-...+.-. .+..|.++|+-|+
T Consensus 312 ~~~~Fl~~~f~~~D~d~D-g~L~p~El~~LF~~~P~-~pW~~~~~~~~t~------~~~~G~ltl~g~l 372 (625)
T KOG1707|consen 312 KGYRFLVDVFEKFDRDND-GALSPEELKDLFSTAPG-SPWTSSPYKDSTV------KNERGWLTLNGFL 372 (625)
T ss_pred HHHHHHHHHHHhccCCCC-CCcCHHHHHHHhhhCCC-CCCCCCcccccce------ecccceeehhhHH
Confidence 344567889999999999 99999999999988751 1111111111111 1146889998887
No 160
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=38.46 E-value=32 Score=28.85 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=43.3
Q ss_pred CCCCcccHHHHHHHHHH----hccCCCCCCCCHHHHHHHHHHcCCCCCce-eehHHHHHH
Q 013259 317 NDGDYITYSGFCEALEQ----LNLTGHKHGLADEETKDLWVQADIDGNGV-VDYKEFQQR 371 (447)
Q Consensus 317 ~~~G~i~~~el~~~l~~----~g~~~~~~~~~~~~~~~~~~~~D~~~~g~-i~~~EF~~~ 371 (447)
|+ -.||.+||.+++.. +.+.|.|..++.++++++.+.+.....+. ++..|-+++
T Consensus 80 Gd-~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GD-EELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CC-EECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 44 68999999999875 23447888899999999999998876664 999887754
No 161
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=38.45 E-value=47 Score=17.99 Aligned_cols=16 Identities=6% Similarity=0.088 Sum_probs=12.2
Q ss_pred cCCCCCCcccHHHHHHH
Q 013259 314 KADNDGDYITYSGFCEA 330 (447)
Q Consensus 314 D~~~~~G~i~~~el~~~ 330 (447)
|.|+| |.|+.-++..+
T Consensus 1 DvN~D-G~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGD-GKVNAIDLALL 16 (21)
T ss_dssp -TTSS-SSSSHHHHHHH
T ss_pred CCCCC-CcCCHHHHHHH
Confidence 67899 99999887644
No 162
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=37.70 E-value=37 Score=28.46 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=28.3
Q ss_pred CcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCC-------CceeehHHHHHHH
Q 013259 320 DYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDG-------NGVVDYKEFQQRI 372 (447)
Q Consensus 320 G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~-------~g~i~~~EF~~~~ 372 (447)
+.||..||.++=+-+. .+...+++++++|..+| .+.|+|+-|...|
T Consensus 6 ~~lsp~eF~qLq~y~e-------ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm 58 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE-------YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFM 58 (138)
T ss_dssp S-S-HHHHHHHHHHHH-------H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHH
T ss_pred eccCHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHH
Confidence 7899999988755443 45567899999995443 4689999998555
No 163
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=36.71 E-value=1.1e+02 Score=20.60 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=31.7
Q ss_pred hhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 013259 302 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQ 354 (447)
Q Consensus 302 ~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~ 354 (447)
+...|...|.. + .+++.++...+...+| ++...|..+|..
T Consensus 11 q~~~L~~~f~~-----~-~~p~~~~~~~la~~l~-------l~~~~V~~WF~n 50 (57)
T PF00046_consen 11 QLKVLEEYFQE-----N-PYPSKEEREELAKELG-------LTERQVKNWFQN 50 (57)
T ss_dssp HHHHHHHHHHH-----S-SSCHHHHHHHHHHHHT-------SSHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----h-cccccccccccccccc-------ccccccccCHHH
Confidence 34456666763 4 8999999999999999 899999998863
No 164
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=35.80 E-value=40 Score=32.53 Aligned_cols=72 Identities=17% Similarity=0.142 Sum_probs=53.6
Q ss_pred HHHHHhhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHH
Q 013259 296 KCLLRRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQ 370 (447)
Q Consensus 296 ~~~~~~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~ 370 (447)
.+.++.....|+.+|+.+=.+.+ +......+..+-..+. ....++-..++.=||..+|.|.||.++-.|...
T Consensus 203 ~qeL~~lg~RL~dWF~~lhe~s~-~~~~~ss~~~~~~~~d--~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~ 274 (434)
T KOG3555|consen 203 DQELRRLGNRLRDWFKALHEDSS-QNDKTSSLHSAASGFD--TSILPICKDSLGWMFNKLDTNYDLLLDQSELRA 274 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh-ccCcchhhcccccccc--cccCcchhhhhhhhhhccccccccccCHHHhhh
Confidence 34455667788999998888888 7777776666544332 112446678899999999999999999999874
No 165
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=35.79 E-value=34 Score=25.70 Aligned_cols=33 Identities=24% Similarity=0.509 Sum_probs=22.9
Q ss_pred CcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCC
Q 013259 320 DYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDG 359 (447)
Q Consensus 320 G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~ 359 (447)
|+||.+|+..+|.... ++.+.++.++..+...+
T Consensus 20 G~lT~~eI~~~L~~~~-------~~~e~id~i~~~L~~~g 52 (82)
T PF03979_consen 20 GYLTYDEINDALPEDD-------LDPEQIDEIYDTLEDEG 52 (82)
T ss_dssp SS-BHHHHHHH-S-S----------HHHHHHHHHHHHTT-
T ss_pred CcCCHHHHHHHcCccC-------CCHHHHHHHHHHHHHCC
Confidence 9999999999987544 88899999999887655
No 166
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=35.58 E-value=45 Score=23.90 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=31.7
Q ss_pred CcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCC
Q 013259 320 DYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDG 359 (447)
Q Consensus 320 G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~ 359 (447)
+-++..+|.+.|..-| ..++++.+...++.+|.++
T Consensus 12 ~P~g~~~l~~~L~~~g-----~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 12 KPLGRKQLAEELKLRG-----EELSEEAVRRRLRAMERDG 46 (66)
T ss_pred CCCCHHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHCC
Confidence 7799999999999888 8899999999999998875
No 167
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=34.52 E-value=41 Score=35.03 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=47.7
Q ss_pred HhHHHHHH-HhhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHH-hccCCCCCCCCHHHHHHHHHHcCCC---C--Cceee
Q 013259 292 FGMFKCLL-RRASLTETDAFAFLKADNDGDYITYSGFCEALEQ-LNLTGHKHGLADEETKDLWVQADID---G--NGVVD 364 (447)
Q Consensus 292 ~~~~~~~~-~~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~-~g~~~~~~~~~~~~~~~~~~~~D~~---~--~g~i~ 364 (447)
++...+.+ ......+..+|...|.|+| |.++-.||-..=++ ++ .++...+++.+-...+.. + +..+.
T Consensus 182 yda~~qelkp~~v~al~RIFki~D~d~D-~~Lsd~Eln~fQ~~CF~-----~pl~p~~l~~vk~vv~e~~p~gv~~~~lt 255 (625)
T KOG1707|consen 182 YDAEEQELKPRCVKALKRIFKISDSDND-GALSDAELNDFQKKCFN-----TPLDPQELEDVKNVVQEICPDGVYERGLT 255 (625)
T ss_pred cccccccccHHHHHHHHHHHhhhccccc-cccchhhhhHHHHHhcC-----CCCCHHHHHHHHHHHHhhcCchhhhcccc
Confidence 33333334 4566788999999999999 99999999877543 46 777777665554444322 1 33455
Q ss_pred hHHHH
Q 013259 365 YKEFQ 369 (447)
Q Consensus 365 ~~EF~ 369 (447)
..-|+
T Consensus 256 l~GFL 260 (625)
T KOG1707|consen 256 LPGFL 260 (625)
T ss_pred ccchH
Confidence 55565
No 168
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=33.79 E-value=33 Score=35.93 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=12.6
Q ss_pred CCCCCCCcceeEEeee
Q 013259 423 NYSLSDHARLTVVFSP 438 (447)
Q Consensus 423 ~~~~~~~~~l~~~~~~ 438 (447)
++-.|||=|..+.|..
T Consensus 576 ei~~SDHRPV~A~F~v 591 (621)
T PLN03191 576 EIRLSDHRPVSSMFLV 591 (621)
T ss_pred CcccCCchhcceEEEE
Confidence 4667999999888864
No 169
>PLN02228 Phosphoinositide phospholipase C
Probab=32.66 E-value=1.3e+02 Score=31.59 Aligned_cols=67 Identities=9% Similarity=0.270 Sum_probs=48.1
Q ss_pred hhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCC----CCceeehHHHHHHHhcc
Q 013259 303 SLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADID----GNGVVDYKEFQQRIWKT 375 (447)
Q Consensus 303 ~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~----~~g~i~~~EF~~~~~~~ 375 (447)
..++..+|..+- ++ +.++.++|..+|.... ++ ...+.+.+++++..+... ..|.++++.|..+|+..
T Consensus 23 ~~ei~~if~~~s--~~-~~~t~~~~~~FL~~~Q--~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 23 PVSIKRLFEAYS--RN-GKMSFDELLRFVSEVQ--GE-RHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred cHHHHHHHHHhc--CC-CccCHHHHHHHHHHhc--CC-ccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 456777887764 34 6899999999998763 01 224567788899887543 24679999999888653
No 170
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.86 E-value=34 Score=28.71 Aligned_cols=59 Identities=19% Similarity=0.100 Sum_probs=29.4
Q ss_pred CCeEEEEEecccCCCCCCCchh-hHHHHHHHHHHHHHHHHHcCC-C------CCcEEEeecCCCccCCc
Q 013259 167 RQEILIVNTHLLFPHDSSLSLV-RLHQVYKILQHVESYQKEHNL-K------PIPIILCGDWNGSKRGH 227 (447)
Q Consensus 167 g~~l~v~n~HL~~~~~~~~~~~-R~~q~~~l~~~l~~~~~~~~~-~------~~pvIl~GDFN~~p~s~ 227 (447)
+..+.+++.|+.++... ... |..-...+.+...-....... + ..-|+..||+|.-..+.
T Consensus 58 ~~~~~~v~~hl~~~~~~--~~~~r~~d~~~i~~~~~~~~~~~~~~~~~~~~~~D~v~w~GDlN~Rl~~~ 124 (145)
T KOG0565|consen 58 QTSFCFVISHLTSGVHK--VYERRNEDYQEILNGLRFPSVSPASEPVISDGEHDTVIWLGDLNYRLSGP 124 (145)
T ss_pred CceEEEEEecccccchh--hHHHhhccHHHHHhhccccccCcccccccccccccEEEEecceeeeecCc
Confidence 56799999999875421 111 222233332222111000000 0 13488999999865543
No 171
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.61 E-value=54 Score=32.27 Aligned_cols=56 Identities=23% Similarity=0.367 Sum_probs=43.2
Q ss_pred hHHHHhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHH
Q 013259 305 TETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQ 369 (447)
Q Consensus 305 ~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~ 369 (447)
...++|-.+-. -+ |+||-.--++-|.. ..++..-+-++.+-.|.|.||.++-+||.
T Consensus 445 ~yde~fy~l~p-~~-gk~sg~~ak~~mv~-------sklpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 445 TYDEIFYTLSP-VN-GKLSGRNAKKEMVK-------SKLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred chHhhhhcccc-cC-ceeccchhHHHHHh-------ccCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 44455655543 24 88888777777665 44888889999999999999999999996
No 172
>COG5562 Phage envelope protein [General function prediction only]
Probab=29.77 E-value=32 Score=28.38 Aligned_cols=28 Identities=11% Similarity=0.112 Sum_probs=21.9
Q ss_pred HHHHcCCCCCceeehHHHHHHHhccCcc
Q 013259 351 LWVQADIDGNGVVDYKEFQQRIWKTTWS 378 (447)
Q Consensus 351 ~~~~~D~~~~g~i~~~EF~~~~~~~~~~ 378 (447)
+......+..|+++|+||+..+|....+
T Consensus 77 i~~al~~~qsGqttF~ef~~~la~AGVf 104 (137)
T COG5562 77 IKTALRRHQSGQTTFEEFCSALAEAGVF 104 (137)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHhCCeE
Confidence 4445556778999999999999886665
No 173
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.48 E-value=59 Score=27.20 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=40.1
Q ss_pred HhhhhcCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHHhc
Q 013259 309 AFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 374 (447)
Q Consensus 309 ~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~~~ 374 (447)
+|+.++.| |.++..|...+..-+. +...++.+++..++.....-+...|||-.|...|.+
T Consensus 35 lf~Vm~AD---G~v~~~E~~a~r~il~---~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r 94 (148)
T COG4103 35 LFHVMEAD---GTVSESEREAFRAILK---ENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKR 94 (148)
T ss_pred HHHHHhcc---cCcCHHHHHHHHHHHH---HHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 67777554 5577777544432221 013489999999998887777788999888865543
No 174
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.06 E-value=58 Score=33.00 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=29.0
Q ss_pred hhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHh
Q 013259 301 RASLTETDAFAFLKADNDGDYITYSGFCEALEQL 334 (447)
Q Consensus 301 ~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~ 334 (447)
-.+.+|.-++...|.|.| |-++..||+.+|..+
T Consensus 262 lpi~ELshIWeLsD~d~D-GALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 262 LPIEELSHIWELSDVDRD-GALTLSEFCAAFHLV 294 (737)
T ss_pred CchHHHHHHHhhcccCcc-ccccHHHHHhhHhhe
Confidence 356788899999999999 999999999998754
No 175
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=26.56 E-value=1.3e+02 Score=21.93 Aligned_cols=53 Identities=19% Similarity=0.178 Sum_probs=31.8
Q ss_pred HhhhhhHHHHhhhhcCCCCCCcccHHHHHHHHHHhc-cCCCCCCCCHHHHHHHHHHc
Q 013259 300 RRASLTETDAFAFLKADNDGDYITYSGFCEALEQLN-LTGHKHGLADEETKDLWVQA 355 (447)
Q Consensus 300 ~~~~~~l~~~F~~~D~~~~~G~i~~~el~~~l~~~g-~~~~~~~~~~~~~~~~~~~~ 355 (447)
.+....+..+...++...+ --|-..+|+.++..+| ++ +...+++-+..+|+.|
T Consensus 19 ~~a~~~l~~a~~~l~~~~~-~dl~a~~L~~A~~~L~~It--G~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 19 EQALEHLEDALEALENGLP-LDLVAEDLREALESLGEIT--GEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHC--TSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHh--CCCChHHHHHHHHHhh
Confidence 4455566666666665555 5677788999988763 11 1456667777787654
No 176
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=26.44 E-value=98 Score=27.38 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=25.2
Q ss_pred cCCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCC
Q 013259 314 KADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADID 358 (447)
Q Consensus 314 D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~ 358 (447)
..|.+ |+++.+||-+.+..-+ ..++.+++++++..-|+.
T Consensus 26 ~~d~~-G~v~v~dLL~~~~~~~-----~~~t~~~i~~vV~~~~K~ 64 (186)
T PF01885_consen 26 VMDPD-GWVSVDDLLRALRFKG-----LWVTEEDIREVVETDDKQ 64 (186)
T ss_dssp ---TT---EEHHHHHHHHHHT------TT--HHHHHHHHHH-SS-
T ss_pred ccCCC-CCEeHHHHHHHHHHcC-----CCCCHHHHHHHHhhCCCC
Confidence 45788 9999999999988766 668899999999886543
No 177
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=23.86 E-value=1.3e+02 Score=21.51 Aligned_cols=45 Identities=7% Similarity=0.217 Sum_probs=29.8
Q ss_pred hhhcCCCCCCcccHHHHHHHHHHhc-c--C--CCCCCCCHHHHHHHHHHcC
Q 013259 311 AFLKADNDGDYITYSGFCEALEQLN-L--T--GHKHGLADEETKDLWVQAD 356 (447)
Q Consensus 311 ~~~D~~~~~G~i~~~el~~~l~~~g-~--~--~~~~~~~~~~~~~~~~~~D 356 (447)
+.+|+..+ .+|+.++++++++.-- + - -.+..+|..-+-+++.+-.
T Consensus 10 RLYDT~~s-~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e~e 59 (64)
T PF07879_consen 10 RLYDTETS-SYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILEEE 59 (64)
T ss_pred ccccCCCc-eeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHHHH
Confidence 46899999 9999999999987520 0 0 0015566666666665543
No 178
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=23.44 E-value=95 Score=26.43 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=24.6
Q ss_pred EEEEecccCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCc
Q 013259 171 LIVNTHLLFPHDSSLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGS 223 (447)
Q Consensus 171 ~v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~ 223 (447)
.|.-+||...... ....|...-..+.+.+++..+.. ...-+|++||+=..
T Consensus 2 ~isD~HL~~~~~~-~~l~~~~~~~~~~~~~~~~i~~~--~pd~vv~~GDl~~~ 51 (156)
T cd08165 2 FLADTHLLGSILG-HWLDKLRREWQMERSFQTSLWLL--QPDVVFVLGDLFDE 51 (156)
T ss_pred ccccchhcCCccc-HHHHHHhhhHHHHHHHHHHHHhc--CCCEEEECCCCCCC
Confidence 3556787432211 11223333333444444444432 34459999999543
No 179
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=23.30 E-value=2.3e+02 Score=20.44 Aligned_cols=26 Identities=8% Similarity=0.082 Sum_probs=12.5
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHc
Q 013259 325 SGFCEALEQLNLTGHKHGLADEETKDLWVQA 355 (447)
Q Consensus 325 ~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 355 (447)
+++.+++...| ..++.+++..+++.-
T Consensus 17 ~~m~~if~l~~-----~~vs~~el~a~lrke 42 (68)
T PF07308_consen 17 DDMIEIFALAG-----FEVSKAELSAWLRKE 42 (68)
T ss_pred HHHHHHHHHcC-----CccCHHHHHHHHCCC
Confidence 34444444444 445555555555443
No 180
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=22.36 E-value=1.5e+02 Score=26.15 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=30.4
Q ss_pred CCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCC
Q 013259 315 ADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADI 357 (447)
Q Consensus 315 ~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~ 357 (447)
-|.+ |++..+||-+.++.-+ ..++.+++++++..-|+
T Consensus 28 ld~~-G~v~v~~Ll~~~~~~~-----~~~t~~~l~~vV~~d~K 64 (179)
T PRK00819 28 LDEE-GWVDIDALIEALAKAY-----KWVTRELLEAVVESDDK 64 (179)
T ss_pred cCCC-CCEEHHHHHHHHHHcc-----CCCCHHHHHHHHHcCCC
Confidence 4788 9999999999987655 56899999999877554
No 181
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=22.33 E-value=1.9e+02 Score=17.65 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=13.1
Q ss_pred cccHHHHHHHHHHhccC
Q 013259 321 YITYSGFCEALEQLNLT 337 (447)
Q Consensus 321 ~i~~~el~~~l~~~g~~ 337 (447)
.++..||++.++..|+.
T Consensus 3 ~l~v~eLk~~l~~~gL~ 19 (35)
T PF02037_consen 3 KLTVAELKEELKERGLS 19 (35)
T ss_dssp TSHHHHHHHHHHHTTS-
T ss_pred cCcHHHHHHHHHHCCCC
Confidence 46788999999988843
No 182
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=22.03 E-value=37 Score=28.08 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=33.4
Q ss_pred CcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHcCCCCCceeehHHHHHHH
Q 013259 320 DYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 372 (447)
Q Consensus 320 G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~EF~~~~ 372 (447)
|.|+.+|...+...+. ....++..+.+.++..++.-....+++.+|+..+
T Consensus 38 G~v~~~E~~~i~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 87 (140)
T PF05099_consen 38 GEVDPEEIEAIRQLLA---ERFGLSPEEAEELIELADELKQEPIDLEELLREL 87 (140)
T ss_dssp SS--CHHHHHHHHHHH---HCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH---HhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 9999999887766551 0023667777888877776666678888887555
No 183
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=21.53 E-value=2e+02 Score=27.41 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=11.5
Q ss_pred CCcEEEeecCCCcc
Q 013259 211 PIPIILCGDWNGSK 224 (447)
Q Consensus 211 ~~pvIl~GDFN~~p 224 (447)
+..+|+||+|.+.|
T Consensus 64 P~~fVL~GnF~S~p 77 (291)
T PTZ00235 64 PVGFIFMGDFISLK 77 (291)
T ss_pred CeEEEEecCccCCc
Confidence 34489999999987
No 184
>PLN02223 phosphoinositide phospholipase C
Probab=20.67 E-value=2.3e+02 Score=29.55 Aligned_cols=70 Identities=6% Similarity=-0.036 Sum_probs=48.8
Q ss_pred hhhhHHHHhhhhcCCCCCCcccHHHHHHHH---HHhccCCCCCCCCHHHHHHHHHHcCCCC--------CceeehHHHHH
Q 013259 302 ASLTETDAFAFLKADNDGDYITYSGFCEAL---EQLNLTGHKHGLADEETKDLWVQADIDG--------NGVVDYKEFQQ 370 (447)
Q Consensus 302 ~~~~l~~~F~~~D~~~~~G~i~~~el~~~l---~~~g~~~~~~~~~~~~~~~~~~~~D~~~--------~g~i~~~EF~~ 370 (447)
...+++.+|..+- ++. |.++.+.|.++| .... |+ ...+.++++.++..+-... .+.++++.|..
T Consensus 14 ~p~~v~~~f~~~~-~~~-~~m~~~~l~~fl~~l~~~q--~e-~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~ 88 (537)
T PLN02223 14 QPDLILNFFGNEF-HGY-DDDMPELLPRFIELLDTEK--DE-DGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNE 88 (537)
T ss_pred CcHHHHHHHHHhh-cCC-CCCCHHHHHHHHHHHHHhc--cc-ccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHH
Confidence 4457788888873 666 899999999998 3321 00 2366778888887653222 25699999999
Q ss_pred HHhccC
Q 013259 371 RIWKTT 376 (447)
Q Consensus 371 ~~~~~~ 376 (447)
+|+...
T Consensus 89 ~L~s~~ 94 (537)
T PLN02223 89 FLFSTE 94 (537)
T ss_pred HhcCcc
Confidence 887644
Done!